GSE130291:vernalization in Arabidopsis thaliana

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
AT1G32640 Links TAIR	AT1G32640	Basic helix-loop-helix (bHLH) DNA-binding family protein

Gene	Promoter	Pearson corr. coef.	P-value	Plot
MYC2	arTal_v1_Chr1_-_11801407_11801407	-0.55	4.0e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
Chr1_+_28975255 Show fit	2.22	AT1G77120.1	ADH1 Links TAIR Show fit	alcohol dehydrogenase 1
Chr1_+_10477885 Show fit	0.81	AT1G29930.1	CAB1 Links TAIR Show fit	chlorophyll A/B binding protein 1
Chr1_-_25049424 Show fit	0.35	AT1G67090.2	RBCS1A Links TAIR Show fit	ribulose bisphosphate carboxylase small chain 1A
Chr1_-_25049667 Show fit	0.35	AT1G67090.1	RBCS1A Links TAIR Show fit	ribulose bisphosphate carboxylase small chain 1A
Chr4_+_14034536 Show fit	0.11	AT4G28370.3 AT4G28370.2 AT4G28370.1 AT4G28370.4	AT4G28370 Links TAIR Show fit	RING/U-box superfamily protein

View svg image
View png image

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.4	2.2	GO:0031000	response to caffeine(GO:0031000) response to alkaloid(GO:0043279)
0.0	0.8	GO:0009768	photosynthesis, light harvesting in photosystem I(GO:0009768)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.7	GO:0031977	thylakoid lumen(GO:0031977)
0.0	0.8	GO:0010287	plastoglobule(GO:0010287)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	2.2	GO:0004024	alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.1	0.7	GO:0016984	ribulose-bisphosphate carboxylase activity(GO:0016984)
0.0	0.8	GO:0016168	chlorophyll binding(GO:0016168)