Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT4G18890
Z-value: 0.92
Transcription factors associated with AT4G18890
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G18890
|
AT4G18890 | BES1/BZR1 homolog 3 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BEH3 | arTal_v1_Chr4_+_10352386_10352386 | -0.69 | 6.2e-03 | Click! |
Activity profile of AT4G18890 motif
Sorted Z-values of AT4G18890 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| Chr1_+_3288087 | 1.07 |
AT1G10070.3
AT1G10070.2 AT1G10070.1 |
BCAT-2
|
branched-chain amino acid transaminase 2 |
| Chr1_+_18542061 | 0.80 |
AT1G50040.1
|
AT1G50040
|
formin-like protein, putative (DUF1005) |
| Chr1_+_5274271 | 0.73 |
AT1G15330.1
|
AT1G15330
|
Cystathionine beta-synthase (CBS) protein |
| Chr5_+_22716917 | 0.71 |
AT5G56100.1
|
AT5G56100
|
glycine-rich protein / oleosin |
| Chr5_+_26266180 | 0.66 |
AT5G65690.1
AT5G65690.2 AT5G65690.3 AT5G65690.4 |
PCK2
|
phosphoenolpyruvate carboxykinase 2 |
| Chr4_+_15230008 | 0.62 |
AT4G31380.1
|
FLP1
|
flowering-promoting factor-like protein |
| Chr1_+_26400694 | 0.61 |
AT1G70090.1
AT1G70090.2 |
LGT8
|
glucosyl transferase family 8 |
| Chr1_-_1559917 | 0.59 |
AT1G05340.1
|
AT1G05340
|
cysteine-rich TM module stress tolerance protein |
| Chr2_+_13658888 | 0.58 |
AT2G32150.1
AT2G32150.2 AT2G32150.3 |
AT2G32150
|
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| Chr1_-_30202349 | 0.57 |
AT1G80340.1
|
GA3OX2
|
gibberellin 3-oxidase 2 |
| Chr5_+_23337832 | 0.56 |
AT5G57625.1
|
AT5G57625
|
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein |
| Chr4_+_8937358 | 0.55 |
AT4G15700.1
|
AT4G15700
|
Thioredoxin superfamily protein |
| Chr3_+_5234457 | 0.54 |
AT3G15500.1
|
NAC3
|
NAC domain containing protein 3 |
| Chr1_-_2305031 | 0.52 |
AT1G07500.1
|
AT1G07500
|
hypothetical protein |
| Chr5_+_1835047 | 0.51 |
AT5G06090.1
|
GPAT7
|
glycerol-3-phosphate acyltransferase 7 |
| Chr3_-_222827 | 0.49 |
AT3G01570.1
|
AT3G01570
|
Oleosin family protein |
| Chr1_-_11222789 | 0.49 |
AT1G31350.1
AT1G31350.2 |
KUF1
|
KAR-UP F-box 1 |
| Chr3_-_1939853 | 0.48 |
AT3G06390.1
|
AT3G06390
|
Uncharacterized protein family (UPF0497) |
| Chr1_+_20458952 | 0.46 |
AT1G54870.2
AT1G54870.1 |
AT1G54870
|
NAD(P)-binding Rossmann-fold superfamily protein |
| Chr3_+_6722825 | 0.46 |
AT3G19390.1
|
AT3G19390
|
Granulin repeat cysteine protease family protein |
| Chr3_+_18029659 | 0.45 |
AT3G48660.1
|
AT3G48660
|
transmembrane protein, putative (DUF 3339) |
| Chr1_-_29993724 | 0.44 |
AT1G79700.1
AT1G79700.3 AT1G79700.2 |
WRI4
|
Integrase-type DNA-binding superfamily protein |
| Chr3_+_5121303 | 0.44 |
AT3G15210.1
|
ERF4
|
ethylene responsive element binding factor 4 |
| Chr4_-_13069762 | 0.44 |
AT4G25620.1
|
AT4G25620
|
hydroxyproline-rich glycoprotein family protein |
| Chr3_-_15559710 | 0.44 |
AT3G43654.1
|
AT3G43654
|
|
| Chr5_-_17435405 | 0.44 |
AT5G43410.1
|
AT5G43410
|
Integrase-type DNA-binding superfamily protein |
| Chr4_+_13275200 | 0.44 |
AT4G26200.1
|
ACS7
|
1-amino-cyclopropane-1-carboxylate synthase 7 |
| Chr5_+_1608988 | 0.43 |
AT5G05440.1
|
PYL5
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
| Chr5_+_1378954 | 0.43 |
AT5G04770.3
|
CAT6
|
cationic amino acid transporter 6 |
| Chr1_+_900732 | 0.42 |
AT1G03610.2
AT1G03610.1 |
AT1G03610
|
plant/protein (DUF789) |
| Chr5_+_1378788 | 0.41 |
AT5G04770.2
|
CAT6
|
cationic amino acid transporter 6 |
| Chr3_-_21097481 | 0.41 |
AT3G57010.1
|
AT3G57010
|
Calcium-dependent phosphotriesterase superfamily protein |
| Chr5_+_1378621 | 0.41 |
AT5G04770.1
|
CAT6
|
cationic amino acid transporter 6 |
| Chr5_-_9005941 | 0.41 |
AT5G25830.1
|
GATA12
|
GATA transcription factor 12 |
| Chr2_+_9488413 | 0.39 |
AT2G22330.2
AT2G22330.1 |
CYP79B3
|
cytochrome P450, family 79, subfamily B, polypeptide 3 |
| Chr2_-_19512728 | 0.39 |
AT2G47560.1
|
AT2G47560
|
RING/U-box superfamily protein |
| Chr2_+_16221815 | 0.38 |
AT2G38820.2
AT2G38820.1 |
AT2G38820
|
DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506) |
| Chr1_+_9951762 | 0.38 |
AT1G28360.1
|
ERF12
|
ERF domain protein 12 |
| Chr3_+_5006526 | 0.38 |
AT3G14880.1
AT3G14880.2 |
AT3G14880
|
transcription factor-like protein |
| Chr4_+_9157471 | 0.38 |
AT4G16160.2
AT4G16160.1 |
ATOEP16-2
|
Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein |
| Chr2_+_18641563 | 0.37 |
AT2G45210.1
|
SAUR36
|
SAUR-like auxin-responsive protein family |
| Chr1_-_11108095 | 0.37 |
AT1G31120.1
|
KUP10
|
K+ uptake permease 10 |
| Chr5_+_5211719 | 0.36 |
AT5G15970.1
|
KIN2
|
stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) |
| Chr3_-_2225254 | 0.36 |
AT3G07030.1
AT3G07030.5 |
AT3G07030
|
Alba DNA/RNA-binding protein |
| Chr1_-_4892332 | 0.35 |
AT1G14330.1
|
AT1G14330
|
Galactose oxidase/kelch repeat superfamily protein |
| Chr2_+_19028359 | 0.35 |
AT2G46360.1
|
AT2G46360
|
hypothetical protein |
| Chr4_+_2509053 | 0.35 |
AT4G04930.1
|
DES-1-LIKE
|
fatty acid desaturase family protein |
| Chr3_-_2225465 | 0.35 |
AT3G07030.3
AT3G07030.2 AT3G07030.4 |
AT3G07030
|
Alba DNA/RNA-binding protein |
| Chr5_-_5006882 | 0.35 |
AT5G15410.1
AT5G15410.2 |
DND1
|
Cyclic nucleotide-regulated ion channel family protein |
| Chr1_+_9312936 | 0.34 |
AT1G26870.1
|
FEZ
|
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
| Chr1_-_958383 | 0.34 |
AT1G03800.1
|
ERF10
|
ERF domain protein 10 |
| Chr5_+_22152724 | 0.34 |
AT5G54530.1
|
AT5G54530
|
serine protease, putative (Protein of unknown function, DUF538) |
| Chr3_-_4614848 | 0.34 |
AT3G13970.3
AT3G13970.4 AT3G13970.2 AT3G13970.1 |
APG12B
|
Ubiquitin-like superfamily protein |
| Chr3_+_22492811 | 0.34 |
AT3G60870.1
|
AHL18
|
AT-hook motif nuclear-localized protein 18 |
| Chr5_-_1558486 | 0.33 |
AT5G05250.1
|
AT5G05250
|
hypothetical protein |
| Chr3_-_11384145 | 0.33 |
AT3G29575.1
AT3G29575.4 AT3G29575.3 |
AFP3
|
ABI five binding protein 3 |
| Chr4_+_9727687 | 0.33 |
AT4G17440.2
AT4G17440.3 AT4G17440.4 AT4G17440.1 |
AT4G17440
|
chromogranin (DUF1639) |
| Chr4_+_10142255 | 0.32 |
AT4G18350.1
|
NCED2
|
nine-cis-epoxycarotenoid dioxygenase 2 |
| Chr2_+_18727504 | 0.32 |
AT2G45430.1
|
AHL22
|
AT-hook motif nuclear-localized protein 22 |
| Chr2_-_8045008 | 0.32 |
AT2G18540.1
AT2G18540.2 |
AT2G18540
|
RmlC-like cupins superfamily protein |
| Chr2_-_11608416 | 0.32 |
AT2G27160.2
|
AT2G27160
|
hypothetical protein |
| Chr2_-_11608166 | 0.32 |
AT2G27160.1
|
AT2G27160
|
hypothetical protein |
| Chr5_+_2167120 | 0.31 |
AT5G06980.1
|
AT5G06980
|
hypothetical protein |
| Chr1_+_29753648 | 0.31 |
AT1G79100.1
|
AT1G79100
|
arginine/serine-rich protein-like protein |
| Chr5_-_3888894 | 0.31 |
AT5G12043.1
|
AT5G12043
|
hypothetical protein |
| Chr1_-_17429813 | 0.31 |
AT1G47495.1
|
AT1G47495
|
hypothetical protein |
| Chr5_+_24386010 | 0.31 |
AT5G60680.1
|
AT5G60680
|
transcription initiation factor TFIID subunit (Protein of unknown function, DUF584) |
| Chr5_+_2167468 | 0.30 |
AT5G06980.4
AT5G06980.3 AT5G06980.5 AT5G06980.2 |
AT5G06980
|
hypothetical protein |
| Chr4_-_17530589 | 0.30 |
AT4G37250.1
|
AT4G37250
|
Leucine-rich repeat protein kinase family protein |
| Chr5_+_2305551 | 0.30 |
AT5G07310.1
|
AT5G07310
|
Integrase-type DNA-binding superfamily protein |
| Chr2_-_16244531 | 0.30 |
AT2G38905.1
|
AT2G38905
|
Low temperature and salt responsive protein family |
| Chr2_-_17438168 | 0.29 |
AT2G41800.1
|
AT2G41800
|
imidazolonepropionase (Protein of unknown function, DUF642) |
| Chr4_-_14592610 | 0.29 |
AT4G29800.1
|
PLP8
|
PATATIN-like protein 8 |
| Chr4_+_11228187 | 0.29 |
AT4G21020.1
|
AT4G21020
|
Late embryogenesis abundant protein (LEA) family protein |
| Chr3_+_5831136 | 0.29 |
AT3G17100.2
AT3G17100.1 |
AT3G17100
|
sequence-specific DNA binding transcription factor |
| Chr3_+_21337533 | 0.29 |
AT3G57620.1
|
AT3G57620
|
glyoxal oxidase-related protein |
| Chr2_+_17543005 | 0.29 |
AT2G42040.1
|
AT2G42040
|
WRC protein |
| Chr3_+_23142485 | 0.29 |
AT3G62570.1
|
AT3G62570
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
| Chr1_-_9753952 | 0.28 |
AT1G27990.1
|
AT1G27990
|
transmembrane protein |
| Chr5_+_4956314 | 0.28 |
AT5G15265.1
AT5G15265.2 |
AT5G15265
|
transmembrane protein |
| Chr1_+_29220349 | 0.28 |
AT1G77740.1
|
PIP5K2
|
phosphatidylinositol-4-phosphate 5-kinase 2 |
| Chr3_+_6678630 | 0.27 |
AT3G19274.1
|
AT3G19274
|
hypothetical protein |
| Chr2_+_13193954 | 0.27 |
AT2G31010.2
AT2G31010.1 |
AT2G31010
|
Protein kinase superfamily protein |
| Chr2_+_1025 | 0.27 |
AT2G01008.1
|
AT2G01008
|
maternal effect embryo arrest protein |
| Chr5_-_1792634 | 0.27 |
AT5G05965.1
|
AT5G05965
|
cell wall RBR3-like protein |
| Chr3_+_8287942 | 0.27 |
AT3G23220.1
|
ESE1
|
Integrase-type DNA-binding superfamily protein |
| Chr3_-_7286442 | 0.27 |
AT3G20830.1
|
UCNL
|
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein |
| Chr3_+_7973394 | 0.27 |
AT3G22510.1
|
AT3G22510
|
Pre-rRNA-processing protein TSR2, conserved region |
| Chr1_-_10690838 | 0.27 |
AT1G30330.2
AT1G30330.1 AT1G30330.3 |
ARF6
|
auxin response factor 6 |
| Chr2_+_538250 | 0.27 |
AT2G02120.1
|
PDF2.1
|
Scorpion toxin-like knottin superfamily protein |
| Chr1_+_29220538 | 0.27 |
AT1G77740.2
|
PIP5K2
|
phosphatidylinositol-4-phosphate 5-kinase 2 |
| Chr4_-_3950602 | 0.27 |
AT4G06700.1
|
AT4G06700
|
|
| Chr3_-_11919546 | 0.26 |
AT3G30290.1
|
CYP702A8
|
cytochrome P450, family 702, subfamily A, polypeptide 8 |
| Chr5_+_9553300 | 0.26 |
AT5G27150.1
|
NHX1
|
Na+/H+ exchanger 1 |
| Chr3_-_9856212 | 0.26 |
AT3G26790.1
|
FUS3
|
AP2/B3-like transcriptional factor family protein |
| Chr3_-_10651540 | 0.26 |
AT3G28415.1
AT3G28415.2 |
ABCB22
|
ABC transporter family protein |
| Chr1_-_21412283 | 0.26 |
AT1G57800.2
AT1G57800.1 |
VIM5
|
zinc finger (C3HC4-type RING finger) family protein |
| Chr4_-_14592825 | 0.25 |
AT4G29800.2
|
PLP8
|
PATATIN-like protein 8 |
| Chr5_+_15375846 | 0.25 |
AT5G38400.1
|
AT5G38400
|
hypothetical protein |
| Chr5_+_8589457 | 0.25 |
AT5G24930.1
|
COL4
|
zinc finger CONSTANS-like protein |
| Chr2_-_17935748 | 0.25 |
AT2G43140.1
AT2G43140.2 |
AT2G43140
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| Chr3_-_11138010 | 0.25 |
AT3G29170.1
|
AT3G29170
|
transmembrane protein (DUF872) |
| Chr1_+_24331373 | 0.25 |
AT1G65480.2
AT1G65480.1 |
FT
|
PEBP (phosphatidylethanolamine-binding protein) family protein |
| Chr3_-_19731519 | 0.25 |
AT3G53232.1
|
RTFL1
|
ROTUNDIFOLIA like 1 |
| Chr4_-_11896480 | 0.25 |
AT4G22590.1
|
TPPG
|
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| Chr3_-_16192365 | 0.24 |
AT3G44610.1
|
AT3G44610
|
Protein kinase superfamily protein |
| Chr1_-_12434735 | 0.24 |
AT1G34140.1
|
PAB1
|
poly(A) binding protein 1 |
| Chr5_+_26030075 | 0.24 |
AT5G65158.1
|
PLAT3
|
Lipase/lipooxygenase, PLAT/LH2 family protein |
| Chr1_+_28704963 | 0.24 |
AT1G76500.1
|
SOB3
|
Putative AT-hook DNA-binding family protein |
| Chr3_-_6760939 | 0.24 |
AT3G19500.3
AT3G19500.2 AT3G19500.1 |
AT3G19500
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| Chr3_+_4449259 | 0.24 |
AT3G13610.1
|
AT3G13610
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| Chr3_-_3722741 | 0.24 |
AT3G11770.1
|
AT3G11770
|
Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| Chr4_+_15676240 | 0.24 |
AT4G32480.1
|
AT4G32480
|
sugar phosphate exchanger, putative (DUF506) |
| Chr4_-_17797901 | 0.24 |
AT4G37850.1
|
AT4G37850
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| Chr4_-_17797704 | 0.24 |
AT4G37850.2
|
AT4G37850
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| Chr3_+_512220 | 0.24 |
AT3G02480.1
|
AT3G02480
|
Late embryogenesis abundant protein (LEA) family protein |
| Chr3_-_11137604 | 0.24 |
AT3G29170.2
|
AT3G29170
|
transmembrane protein (DUF872) |
| Chr3_+_1593668 | 0.23 |
AT3G05500.2
|
AT3G05500
|
Rubber elongation factor protein (REF) |
| Chr4_+_10281033 | 0.23 |
AT4G18680.1
|
AT4G18680
|
delay of germination protein |
| Chr2_+_6292466 | 0.23 |
AT2G14700.1
|
AT2G14700
|
hypothetical protein |
| Chr3_+_9546259 | 0.23 |
AT3G26120.1
|
TEL1
|
terminal EAR1-like 1 |
| Chr1_-_29993058 | 0.23 |
AT1G79700.4
|
WRI4
|
Integrase-type DNA-binding superfamily protein |
| Chr4_-_15896345 | 0.23 |
AT4G32920.1
|
AT4G32920
|
glycine-rich protein |
| Chr3_+_1593182 | 0.23 |
AT3G05500.1
|
AT3G05500
|
Rubber elongation factor protein (REF) |
| Chr3_+_129138 | 0.23 |
AT3G01345.1
|
AT3G01345
|
Expressed protein |
| Chr4_+_10398857 | 0.23 |
AT4G18980.1
|
AtS40-3
|
AtS40-3 |
| Chr4_-_17674589 | 0.22 |
AT4G37620.1
|
AT4G37620
|
|
| Chr5_+_21272824 | 0.22 |
AT5G52400.1
|
CYP715A1
|
cytochrome P450, family 715, subfamily A, polypeptide 1 |
| Chr1_+_9276381 | 0.22 |
AT1G26795.1
|
AT1G26795
|
Plant self-incompatibility protein S1 family |
| Chr5_-_14307036 | 0.22 |
AT5G36293.1
|
AT5G36293
|
|
| Chr1_+_19330949 | 0.22 |
AT1G51990.2
AT1G51990.1 |
AT1G51990
|
O-methyltransferase family protein |
| Chr3_+_22462613 | 0.22 |
AT3G60780.1
|
AT3G60780
|
hypothetical protein (DUF1442) |
| Chr4_+_11738511 | 0.22 |
AT4G22180.1
|
AT4G22180
|
F-box protein (DUF295) |
| Chr3_-_7501888 | 0.22 |
AT3G21320.1
|
AT3G21320
|
EARLY FLOWERING protein |
| Chr2_-_18422839 | 0.22 |
AT2G44660.1
|
AT2G44660
|
ALG6, ALG8 glycosyltransferase family |
| Chr2_-_16014991 | 0.21 |
AT2G38240.1
|
AT2G38240
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| Chr1_-_21385709 | 0.21 |
AT1G57750.1
AT1G57750.2 |
CYP96A15
|
cytochrome P450, family 96, subfamily A, polypeptide 15 |
| Chr3_-_4123582 | 0.21 |
AT3G12920.1
|
BRG3
|
SBP (S-ribonuclease binding protein) family protein |
| Chr3_-_6509343 | 0.21 |
AT3G18870.1
|
AT3G18870
|
Mitochondrial transcription termination factor family protein |
| Chr5_-_24159780 | 0.21 |
AT5G60000.1
|
AT5G60000
|
transmembrane protein |
| Chr4_+_15971109 | 0.21 |
AT4G33100.1
|
AT4G33100
|
protein phosphatase |
| Chr4_+_9128732 | 0.21 |
AT4G16140.2
|
AT4G16140
|
proline-rich family protein |
| Chr1_+_7272526 | 0.21 |
AT1G20900.1
|
ESC
|
Putative AT-hook DNA-binding family protein |
| Chr2_+_1781886 | 0.21 |
AT2G05030.1
|
AT2G05030
|
|
| Chr3_-_12666444 | 0.21 |
AT3G31023.1
|
AT3G31023
|
|
| Chr3_+_6694114 | 0.20 |
AT3G19310.1
|
AT3G19310
|
PLC-like phosphodiesterases superfamily protein |
| Chr4_+_16892909 | 0.20 |
AT4G35590.1
|
RKD5
|
RWP-RK domain-containing protein |
| Chr1_+_20241226 | 0.20 |
AT1G54210.2
AT1G54210.1 AT1G54210.3 |
ATG12A
|
Ubiquitin-like superfamily protein |
| Chr4_+_16893204 | 0.20 |
AT4G35590.2
|
RKD5
|
RWP-RK domain-containing protein |
| Chr3_+_3591251 | 0.20 |
AT3G11420.1
|
AT3G11420
|
beta-1,3-N-acetylglucosaminyltransferase lunatic protein, putative (DUF604) |
| Chr1_+_2277555 | 0.20 |
AT1G07420.1
|
SMO2-1
|
sterol 4-alpha-methyl-oxidase 2-1 |
| Chr3_+_12504367 | 0.20 |
AT3G30814.1
|
AT3G30814
|
|
| Chr4_-_17913790 | 0.20 |
AT4G38190.1
|
CSLD4
|
cellulose synthase like D4 |
| Chr2_-_16846194 | 0.20 |
AT2G40330.1
|
PYL6
|
PYR1-like 6 |
| Chr4_-_11924230 | 0.20 |
AT4G22680.1
|
MYB85
|
myb domain protein 85 |
| Chr2_+_3604528 | 0.20 |
AT2G07880.1
|
AT2G07880
|
|
| Chr1_+_2277830 | 0.20 |
AT1G07420.2
|
SMO2-1
|
sterol 4-alpha-methyl-oxidase 2-1 |
| Chr1_+_9270952 | 0.19 |
AT1G26780.2
AT1G26780.1 |
MYB117
|
myb domain protein 117 |
| Chr1_+_28291698 | 0.19 |
AT1G75390.1
AT1G75390.2 |
bZIP44
|
basic leucine-zipper 44 |
| Chr1_+_17760142 | 0.19 |
AT1G48095.1
|
AT1G48095
|
nucleic acid-binding/zinc ion-binding protein |
| Chr3_+_5187082 | 0.19 |
AT3G15357.1
|
AT3G15357
|
phosphopantothenoylcysteine decarboxylase subunit |
| Chr5_+_8148544 | 0.19 |
AT5G24100.1
|
AT5G24100
|
Leucine-rich repeat protein kinase family protein |
| Chr3_-_18666691 | 0.19 |
AT3G50340.1
|
AT3G50340
|
hypothetical protein |
| Chr4_-_13683594 | 0.19 |
AT4G27330.1
|
SPL
|
sporocyteless (SPL) |
| Chr2_+_6399621 | 0.19 |
AT2G14890.2
|
AGP9
|
arabinogalactan protein 9 |
| Chr5_+_6692909 | 0.19 |
AT5G19810.1
|
AT5G19810
|
Proline-rich extensin-like family protein |
| Chr1_-_8535660 | 0.19 |
AT1G24130.1
|
AT1G24130
|
Transducin/WD40 repeat-like superfamily protein |
| Chr2_-_821291 | 0.19 |
AT2G02835.1
|
AT2G02835
|
nucleic acid/zinc ion-binding protein |
| Chr2_+_9695832 | 0.19 |
AT2G22790.1
|
AT2G22790
|
hypothetical protein |
| Chr1_-_9079646 | 0.19 |
AT1G26240.1
|
AT1G26240
|
Proline-rich extensin-like family protein |
| Chr3_-_2306615 | 0.19 |
AT3G07250.1
|
AT3G07250
|
RNA-binding (RRM-RBD-RNP motif) domain nuclear transport factor 2 family protein |
| Chr2_-_17669836 | 0.19 |
AT2G42440.1
|
ASL15
|
Lateral organ boundaries (LOB) domain family protein |
| Chr3_+_17855112 | 0.19 |
AT3G48230.1
|
AT3G48230
|
carboxyl-terminal peptidase (DUF239) |
| Chr1_+_27157875 | 0.19 |
AT1G72175.2
AT1G72175.1 |
AT1G72175
|
E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) |
| Chr2_+_6399405 | 0.19 |
AT2G14890.1
|
AGP9
|
arabinogalactan protein 9 |
| Chr2_+_10894253 | 0.18 |
AT2G25600.1
|
SPIK
|
Shaker pollen inward K+ channel |
| Chr3_-_5144750 | 0.18 |
AT3G15280.1
|
AT3G15280
|
hypothetical protein |
| Chr4_-_7368730 | 0.18 |
AT4G12430.1
|
TPPF
|
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| Chr3_-_11086003 | 0.18 |
AT3G29110.1
|
AT3G29110
|
Terpenoid cyclases/Protein prenyltransferases superfamily protein |
| Chr2_+_10566836 | 0.18 |
AT2G24790.1
AT2G24790.2 |
COL3
|
CONSTANS-like 3 |
| Chr1_+_3133008 | 0.18 |
AT1G09665.1
|
AT1G09665
|
Toll-Interleukin-Resistance (TIR) domain family protein |
| Chr4_+_9128900 | 0.18 |
AT4G16140.1
|
AT4G16140
|
proline-rich family protein |
| Chr4_-_13920352 | 0.18 |
AT4G27970.2
AT4G27970.3 AT4G27970.1 AT4G27970.6 AT4G27970.5 AT4G27970.4 |
SLAH2
|
SLAC1 homologue 2 |
| Chr5_+_25891449 | 0.18 |
AT5G64750.1
|
ABR1
|
Integrase-type DNA-binding superfamily protein |
| Chr4_+_13120824 | 0.18 |
AT4G25780.1
|
AT4G25780
|
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein |
| Chr4_+_17592996 | 0.18 |
AT4G37420.1
|
AT4G37420
|
glycosyltransferase family protein (DUF23) |
| Chr1_+_5226982 | 0.18 |
AT1G15190.1
|
AT1G15190
|
Fasciclin-like arabinogalactan family protein |
| Chr1_-_5158269 | 0.18 |
AT1G14950.1
|
AT1G14950
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
| Chr5_-_23409452 | 0.18 |
AT5G57785.2
|
AT5G57785
|
hypothetical protein |
| Chr1_-_26146662 | 0.18 |
AT1G69540.3
|
AGL94
|
AGAMOUS-like 94 |
| Chr2_-_16797585 | 0.18 |
AT2G40220.1
|
ABI4
|
Integrase-type DNA-binding superfamily protein |
| Chr5_-_23409715 | 0.18 |
AT5G57785.1
|
AT5G57785
|
hypothetical protein |
| Chr4_-_15591213 | 0.17 |
AT4G32290.1
|
AT4G32290
|
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| Chr3_+_22434864 | 0.17 |
AT3G60690.1
|
AT3G60690
|
SAUR-like auxin-responsive protein family |
| Chr4_-_12533924 | 0.17 |
AT4G24140.1
|
AT4G24140
|
alpha/beta-Hydrolases superfamily protein |
| Chr1_+_24753589 | 0.17 |
AT1G66370.1
|
MYB113
|
myb domain protein 113 |
| Chr4_-_12992585 | 0.17 |
AT4G25420.2
AT4G25420.1 |
GA20OX1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| Chr2_-_14320555 | 0.17 |
AT2G33847.2
|
AT2G33847
|
hypothetical protein |
| Chr2_-_14320714 | 0.17 |
AT2G33847.1
|
AT2G33847
|
hypothetical protein |
| Chr2_-_11139451 | 0.17 |
AT2G26160.1
|
AT2G26160
|
F-box SKIP23-like protein (DUF295) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G18890
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.1 | GO:0009099 | valine biosynthetic process(GO:0009099) |
| 0.1 | 0.7 | GO:0042149 | cellular response to glucose starvation(GO:0042149) |
| 0.1 | 0.5 | GO:0006501 | C-terminal protein lipidation(GO:0006501) |
| 0.1 | 0.6 | GO:0080065 | 4-alpha-methyl-delta7-sterol oxidation(GO:0080065) |
| 0.1 | 0.3 | GO:0017145 | stem cell division(GO:0017145) |
| 0.1 | 0.5 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.1 | 0.7 | GO:1904276 | regulation of wax biosynthetic process(GO:1904276) positive regulation of wax biosynthetic process(GO:1904278) |
| 0.1 | 0.5 | GO:0009647 | skotomorphogenesis(GO:0009647) |
| 0.1 | 0.3 | GO:0070509 | calcium ion import(GO:0070509) |
| 0.1 | 0.4 | GO:0046218 | tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218) |
| 0.1 | 0.5 | GO:0010344 | seed oilbody biogenesis(GO:0010344) |
| 0.1 | 0.3 | GO:0010351 | lithium ion transport(GO:0010351) |
| 0.1 | 0.3 | GO:0010116 | positive regulation of abscisic acid biosynthetic process(GO:0010116) negative regulation of isoprenoid metabolic process(GO:0045827) |
| 0.1 | 0.2 | GO:0009747 | hexokinase-dependent signaling(GO:0009747) |
| 0.1 | 0.3 | GO:0048533 | sporocyte differentiation(GO:0048533) |
| 0.1 | 0.2 | GO:0033506 | homomethionine metabolic process(GO:0033321) glucosinolate biosynthetic process from homomethionine(GO:0033506) |
| 0.1 | 0.9 | GO:0080163 | regulation of protein serine/threonine phosphatase activity(GO:0080163) |
| 0.1 | 0.5 | GO:0046247 | carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247) |
| 0.1 | 1.3 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
| 0.0 | 0.2 | GO:0018410 | C-terminal protein amino acid modification(GO:0018410) |
| 0.0 | 0.1 | GO:0080141 | regulation of jasmonic acid metabolic process(GO:0080140) regulation of jasmonic acid biosynthetic process(GO:0080141) |
| 0.0 | 0.7 | GO:0019915 | lipid storage(GO:0019915) |
| 0.0 | 0.5 | GO:0016024 | CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341) |
| 0.0 | 0.1 | GO:0006474 | N-terminal protein amino acid acetylation(GO:0006474) N-terminal peptidyl-methionine acetylation(GO:0017196) |
| 0.0 | 0.4 | GO:0070298 | negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298) |
| 0.0 | 0.3 | GO:0010199 | organ boundary specification between lateral organs and the meristem(GO:0010199) |
| 0.0 | 0.3 | GO:0007143 | female meiotic division(GO:0007143) |
| 0.0 | 0.1 | GO:0048479 | style development(GO:0048479) |
| 0.0 | 0.8 | GO:0009686 | gibberellin biosynthetic process(GO:0009686) |
| 0.0 | 0.4 | GO:0046513 | ceramide biosynthetic process(GO:0046513) |
| 0.0 | 0.1 | GO:0080117 | secondary growth(GO:0080117) |
| 0.0 | 0.2 | GO:0010023 | proanthocyanidin biosynthetic process(GO:0010023) |
| 0.0 | 0.4 | GO:1905177 | tracheary element differentiation(GO:1905177) |
| 0.0 | 0.2 | GO:0010161 | red light signaling pathway(GO:0010161) |
| 0.0 | 0.2 | GO:0010274 | hydrotropism(GO:0010274) |
| 0.0 | 0.3 | GO:0001709 | cell fate determination(GO:0001709) |
| 0.0 | 0.2 | GO:0032922 | circadian regulation of gene expression(GO:0032922) |
| 0.0 | 0.2 | GO:1901141 | regulation of lignin biosynthetic process(GO:1901141) |
| 0.0 | 0.1 | GO:0015909 | long-chain fatty acid transport(GO:0015909) |
| 0.0 | 0.2 | GO:0048354 | mucilage biosynthetic process involved in seed coat development(GO:0048354) |
| 0.0 | 0.1 | GO:0009823 | cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447) |
| 0.0 | 0.6 | GO:0009958 | positive gravitropism(GO:0009958) |
| 0.0 | 0.1 | GO:0033619 | membrane protein proteolysis(GO:0033619) |
| 0.0 | 0.6 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.0 | 0.1 | GO:0048655 | anther morphogenesis(GO:0048654) anther wall tapetum morphogenesis(GO:0048655) |
| 0.0 | 0.2 | GO:0005987 | sucrose catabolic process(GO:0005987) |
| 0.0 | 0.2 | GO:0070940 | dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940) |
| 0.0 | 0.1 | GO:0071786 | endoplasmic reticulum tubular network organization(GO:0071786) |
| 0.0 | 0.1 | GO:0009939 | positive regulation of gibberellic acid mediated signaling pathway(GO:0009939) |
| 0.0 | 0.3 | GO:0010187 | negative regulation of seed germination(GO:0010187) |
| 0.0 | 0.7 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.5 | GO:0034274 | Atg12-Atg5-Atg16 complex(GO:0034274) |
| 0.1 | 0.7 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.0 | 1.2 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 0.1 | GO:0031417 | N-terminal protein acetyltransferase complex(GO:0031414) NatC complex(GO:0031417) |
| 0.0 | 0.1 | GO:0005687 | U4 snRNP(GO:0005687) |
| 0.0 | 0.4 | GO:0031355 | intrinsic component of plastid outer membrane(GO:0031354) integral component of plastid outer membrane(GO:0031355) intrinsic component of chloroplast outer membrane(GO:0031358) integral component of chloroplast outer membrane(GO:0031359) |
| 0.0 | 0.1 | GO:0071556 | integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576) |
| 0.0 | 0.2 | GO:0019773 | proteasome core complex, alpha-subunit complex(GO:0019773) |
| 0.0 | 0.5 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 0.1 | GO:0098554 | integral component of cytoplasmic side of endoplasmic reticulum membrane(GO:0071458) cytoplasmic side of endoplasmic reticulum membrane(GO:0098554) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.1 | GO:0052656 | L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656) |
| 0.2 | 0.7 | GO:0016707 | gibberellin 3-beta-dioxygenase activity(GO:0016707) |
| 0.1 | 0.7 | GO:0004679 | AMP-activated protein kinase activity(GO:0004679) |
| 0.1 | 0.7 | GO:0003680 | AT DNA binding(GO:0003680) |
| 0.1 | 0.6 | GO:0004611 | phosphoenolpyruvate carboxykinase activity(GO:0004611) |
| 0.1 | 0.5 | GO:0045549 | 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549) |
| 0.1 | 0.5 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.1 | 0.6 | GO:0000254 | C-4 methylsterol oxidase activity(GO:0000254) |
| 0.1 | 1.3 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.0 | 0.3 | GO:0005221 | intracellular cyclic nucleotide activated cation channel activity(GO:0005221) cyclic nucleotide-gated ion channel activity(GO:0043855) |
| 0.0 | 0.9 | GO:0004864 | protein phosphatase inhibitor activity(GO:0004864) |
| 0.0 | 0.5 | GO:0016308 | 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308) |
| 0.0 | 0.2 | GO:0004671 | protein C-terminal carboxyl O-methyltransferase activity(GO:0003880) protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity(GO:0004671) |
| 0.0 | 0.4 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.0 | 0.2 | GO:0045544 | gibberellin 20-oxidase activity(GO:0045544) |
| 0.0 | 0.1 | GO:0004028 | 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028) |
| 0.0 | 0.5 | GO:0008106 | alcohol dehydrogenase (NADP+) activity(GO:0008106) |
| 0.0 | 0.1 | GO:0015245 | fatty acid transporter activity(GO:0015245) |
| 0.0 | 0.2 | GO:0016713 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713) |
| 0.0 | 0.1 | GO:0004108 | citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440) |
| 0.0 | 0.6 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.0 | 0.2 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
| 0.0 | 0.1 | GO:0008460 | dTDP-glucose 4,6-dehydratase activity(GO:0008460) |
| 0.0 | 0.2 | GO:0003955 | NAD(P)H dehydrogenase (quinone) activity(GO:0003955) |
| 0.0 | 0.1 | GO:0042500 | aspartic endopeptidase activity, intramembrane cleaving(GO:0042500) |
| 0.0 | 0.2 | GO:0008028 | monocarboxylic acid transmembrane transporter activity(GO:0008028) |
| 0.0 | 0.3 | GO:0015386 | potassium:proton antiporter activity(GO:0015386) |
| 0.0 | 0.2 | GO:0005242 | inward rectifier potassium channel activity(GO:0005242) |
| 0.0 | 0.2 | GO:0016161 | beta-amylase activity(GO:0016161) |
| 0.0 | 0.2 | GO:0033926 | glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926) |
| 0.0 | 0.1 | GO:0019139 | cytokinin dehydrogenase activity(GO:0019139) |
| 0.0 | 0.5 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.0 | 0.1 | GO:0035673 | oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680) |
| 0.0 | 0.3 | GO:0010333 | terpene synthase activity(GO:0010333) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.3 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.0 | 0.1 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.1 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |