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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G67580

Z-value: 1.64

Transcription factors associated with AT5G67580

Gene Symbol Gene ID Gene Info
AT5G67580
AT5G67580 Homeodomain-like/winged-helix DNA-binding family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
TRB2arTal_v1_Chr5_-_26957725_269577740.544.7e-02Click!

Activity profile of AT5G67580 motif

Sorted Z-values of AT5G67580 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_+_5206156 2.70 AT5G15950.2
AT5G15950
Adenosylmethionine decarboxylase family protein
Chr5_+_5205869 2.68 AT5G15950.1
AT5G15950
Adenosylmethionine decarboxylase family protein
Chr4_-_7401951 2.66 AT4G12470.1
AZI1
azelaic acid induced 1
Chr5_-_22712441 2.58 AT5G56080.1
NAS2
nicotianamine synthase 2
Chr5_-_14753088 2.30 AT5G37260.1
RVE2
Homeodomain-like superfamily protein
Chr3_-_8085669 1.96 AT3G22840.1
ELIP1
Chlorophyll A-B binding family protein
Chr1_-_1248826 1.83 AT1G04570.2
AT1G04570.1
AT1G04570
Major facilitator superfamily protein
Chr1_-_18238497 1.66 AT1G49310.1
AT1G49310
transmembrane protein
Chr5_-_6725966 1.66 AT5G19890.1
AT5G19890
Peroxidase superfamily protein
Chr3_-_82182 1.60 AT3G01260.1
AT3G01260
Galactose mutarotase-like superfamily protein
Chr1_+_22198266 1.47 AT1G60190.1
PUB19
ARM repeat superfamily protein
Chr4_+_5812335 1.45 AT4G09110.1
AT4G09110
RING/U-box superfamily protein
Chr1_-_26163715 1.44 AT1G69570.1
AT1G69570
Dof-type zinc finger DNA-binding family protein
Chr1_+_25701770 1.39 AT1G68500.1
AT1G68500
hypothetical protein
Chr2_+_16079679 1.39 AT2G38390.1
AT2G38390
Peroxidase superfamily protein
Chr1_-_507268 1.35 AT1G02460.1
AT1G02460
Pectin lyase-like superfamily protein
Chr2_+_17057388 1.30 AT2G40880.1
CYSA
cystatin A
Chr3_-_4974521 1.29 AT3G14810.1
AT3G14810.2
MSL5
mechanosensitive channel of small conductance-like 5
Chr1_-_16917053 1.28 AT1G44800.1
SIAR1
nodulin MtN21 /EamA-like transporter family protein
Chr1_+_7404328 1.23 AT1G21140.1
AT1G21140
Vacuolar iron transporter (VIT) family protein
Chr3_+_5705541 1.22 AT3G16770.1
EBP
ethylene-responsive element binding protein
Chr1_+_8046073 1.22 AT1G22730.1
AT1G22730
MA3 domain-containing protein
Chr3_+_9475350 1.22 AT3G25890.2
AT3G25890.1
CRF11
Integrase-type DNA-binding superfamily protein
Chr1_-_27755297 1.19 AT1G73810.1
AT1G73810
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Chr1_-_23246949 1.18 AT1G62770.1
AT1G62770
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr3_-_2699257 1.16 AT3G08860.2
PYD4
PYRIMIDINE 4
Chr5_-_18189523 1.15 AT5G45070.1
PP2-A8
phloem protein 2-A8
Chr5_-_22680152 1.15 AT5G56000.1
Hsp81.4
HEAT SHOCK PROTEIN 81.4
Chr2_-_9056481 1.15 AT2G21130.1
AT2G21130
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr5_-_17755742 1.12 AT5G44110.2
AT5G44110.4
AT5G44110.3
AT5G44110.1
ABCI21
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_-_2699420 1.11 AT3G08860.1
PYD4
PYRIMIDINE 4
Chr5_+_25756272 1.10 AT5G64420.1
AT5G64420
DNA polymerase V family
Chr2_-_17065813 1.09 AT2G40900.1
UMAMIT11
nodulin MtN21 /EamA-like transporter family protein
Chr1_+_29836644 1.08 AT1G79320.1
MC6
metacaspase 6
Chr5_+_22467337 1.06 AT5G55450.1
AT5G55450
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr5_+_17148808 1.06 AT5G42760.2
AT5G42760.1
AT5G42760
Leucine carboxyl methyltransferase
Chr1_-_8203301 1.06 AT1G23140.1
AT1G23140
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr3_-_23046153 1.06 AT3G62270.1
AT3G62270
HCO3- transporter family
Chr1_+_18305445 1.05 AT1G49450.1
AT1G49450
Transducin/WD40 repeat-like superfamily protein
Chr3_-_19213709 1.04 AT3G51800.2
AT3G51800.1
AT3G51800.3
ATG2
metallopeptidase M24 family protein
Chr1_-_4845847 1.00 AT1G14170.2
AT1G14170.1
AT1G14170.3
AT1G14170
RNA-binding KH domain-containing protein
Chr1_+_11181504 0.99 AT1G31280.1
AGO2
Argonaute family protein
Chr1_-_28302728 0.99 AT1G75410.3
AT1G75410.1
BLH3
BEL1-like homeodomain 3
Chr4_-_9935685 0.98 AT4G17880.1
MYC4
Basic helix-loop-helix (bHLH) DNA-binding family protein
Chr1_-_6555610 0.98 AT1G18970.1
GLP4
germin-like protein 4
Chr3_+_541708 0.97 AT3G02560.1
AT3G02560.2
AT3G02560.3
AT3G02560
Ribosomal protein S7e family protein
Chr5_+_18444607 0.97 AT5G45510.2
AT5G45510.1
AT5G45510
Leucine-rich repeat (LRR) family protein
Chr5_+_2563366 0.96 AT5G08000.1
AT5G08000.2
E13L3
glucan endo-1,3-beta-glucosidase-like protein 3
Chr5_-_22991530 0.96 AT5G56860.1
GNC
GATA type zinc finger transcription factor family protein
Chr5_-_24984044 0.96 AT5G62190.1
PRH75
DEAD box RNA helicase (PRH75)
Chr5_-_10070899 0.96 AT5G28060.1
AT5G28060
Ribosomal protein S24e family protein
Chr3_-_2722624 0.95 AT3G08943.1
AT3G08943
ARM repeat superfamily protein
Chr4_-_12180936 0.95 AT4G23290.2
AT4G23290.1
CRK21
cysteine-rich RLK (RECEPTOR-like protein kinase) 21
Chr3_-_10011712 0.95 AT3G27150.2
AT3G27150.1
AT3G27150
Galactose oxidase/kelch repeat superfamily protein
Chr1_-_1286619 0.95 AT1G04620.1
HCAR
coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family
Chr1_-_11079240 0.94 AT1G31050.8
AT1G31050.7
AT1G31050.4
AT1G31050.6
AT1G31050.5
AT1G31050.3
AT1G31050.2
AT1G31050.1
AT1G31050
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_+_4533131 0.94 AT5G14050.1
AT5G14050
Transducin/WD40 repeat-like superfamily protein
Chr4_+_17739514 0.93 AT4G37750.1
ANT
Integrase-type DNA-binding superfamily protein
Chr2_-_4007044 0.93 AT2G10410.1
SADHU1-1

Chr3_+_7673276 0.92 AT3G21770.1
AT3G21770
Peroxidase superfamily protein
Chr3_+_4403355 0.92 AT3G13510.1
AT3G13510
carboxyl-terminal peptidase, putative (DUF239)
Chr3_-_2232361 0.92 AT3G07050.1
NSN1
GTP-binding family protein
Chr1_-_29869784 0.91 AT1G79410.1
OCT5
organic cation/carnitine transporter5
Chr4_+_14004401 0.91 AT4G28260.1
AT4G28260.2
AT4G28260
acyl-UDP-N-acetylglucosamine O-acyltransferase
Chr5_+_25328119 0.90 AT5G63140.1
PAP29
purple acid phosphatase 29
Chr3_-_9271400 0.90 AT3G25520.2
AT3G25520.3
AT3G25520.1
ATL5
ribosomal protein L5
Chr3_+_1024144 0.89 AT3G03960.1
AT3G03960
TCP-1/cpn60 chaperonin family protein
Chr3_-_17340543 0.89 AT3G47080.1
AT3G47080
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_+_16474923 0.89 AT2G39460.1
RPL23AA
ribosomal protein L23AA
Chr3_+_5330194 0.89 AT3G15730.1
PLDALPHA1
phospholipase D alpha 1
Chr1_-_11719988 0.89 AT1G32450.1
NRT1.5
nitrate transporter 1.5
Chr5_-_1139631 0.88 AT5G04150.2
AT5G04150.1
BHLH101
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr2_-_14268003 0.88 AT2G33730.1
AT2G33730
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_+_596397 0.87 AT4G01440.3
AT4G01440.2
AT4G01440.1
AT4G01440.4
UMAMIT31
nodulin MtN21 /EamA-like transporter family protein
Chr4_+_17512254 0.87 AT4G37210.1
AT4G37210.2
AT4G37210
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_6759859 0.87 AT1G19520.1
AT1G19520.2
NFD5
pentatricopeptide (PPR) repeat-containing protein
Chr1_-_27732273 0.87 AT1G73730.2
EIL3
ETHYLENE-INSENSITIVE3-like 3
Chr2_+_7546440 0.87 AT2G17360.1
AT2G17360.2
AT2G17360
Ribosomal protein S4 (RPS4A) family protein
Chr2_-_15511607 0.87 AT2G36930.1
AT2G36930
zinc finger (C2H2 type) family protein
Chr5_+_15895682 0.87 AT5G39710.1
EMB2745
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_16161449 0.87 AT5G40390.1
SIP1
Raffinose synthase family protein
Chr2_-_1167115 0.86 AT2G03820.1
NMD3
nonsense-mediated mRNA decay NMD3 family protein
Chr4_+_12317036 0.86 AT4G23630.1
AT4G23630.2
BTI1
VIRB2-interacting protein 1
Chr5_+_17987591 0.86 AT5G44590.2
AT5G44590.1
AT5G44590
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_+_7275645 0.86 AT3G20810.1
AT3G20810.4
AT3G20810.2
AT3G20810.5
AT3G20810.3
JMJD5
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_-_24083528 0.86 AT5G59780.2
AT5G59780.1
AT5G59780.3
MYB59
myb domain protein 59
Chr2_+_16474149 0.86 AT2G39460.2
RPL23AA
ribosomal protein L23AA
Chr3_-_21156075 0.85 AT3G57150.1
NAP57
homologue of NAP57
Chr3_+_19624278 0.85 AT3G52920.1
AT3G52920.2
AT3G52920
transcriptional activator (DUF662)
Chr1_-_28302571 0.85 AT1G75410.2
BLH3
BEL1-like homeodomain 3
Chr4_+_12264462 0.84 AT4G23500.1
AT4G23500
Pectin lyase-like superfamily protein
Chr5_+_6687030 0.83 AT5G19780.1
TUA5
tubulin alpha-5
Chr1_+_14158452 0.83 AT1G37130.1
NIA2
nitrate reductase 2
Chr1_+_19508938 0.83 AT1G52380.2
AT1G52380.1
AT1G52380.3
AT1G52380
NUP50 (Nucleoporin 50 kDa) protein
Chr4_+_5244865 0.83 AT4G08300.1
UMAMIT17
nodulin MtN21 /EamA-like transporter family protein
Chr5_+_5268421 0.83 AT5G16130.1
AT5G16130
Ribosomal protein S7e family protein
Chr4_-_12560944 0.82 AT4G24200.1
AT4G24200.2
AT4G24200
Transcription elongation factor (TFIIS) family protein
Chr3_-_6212551 0.82 AT3G18130.1
RACK1C_AT
receptor for activated C kinase 1C
Chr2_-_10831655 0.81 AT2G25450.1
AT2G25450
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr4_+_7453196 0.81 AT4G12600.1
AT4G12600.2
AT4G12600
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
Chr1_+_25746697 0.81 AT1G68570.1
AT1G68570
Major facilitator superfamily protein
Chr1_-_6378580 0.81 AT1G18540.1
AT1G18540
Ribosomal protein L6 family protein
Chr2_-_15729170 0.81 AT2G37460.1
UMAMIT12
nodulin MtN21 /EamA-like transporter family protein
Chr4_+_12649985 0.81 AT4G24480.2
AT4G24480.1
AT4G24480.3
AT4G24480
Protein kinase superfamily protein
Chr4_-_17197247 0.80 AT4G36390.1
AT4G36390
Methylthiotransferase
Chr5_+_23940745 0.80 AT5G59350.1
AT5G59350.2
AT5G59350.3
AT5G59350
transmembrane protein
Chr3_-_1305879 0.80 AT3G04760.2
AT3G04760.1
AT3G04760
Pentatricopeptide repeat (PPR-like) superfamily protein
Chr1_+_18870059 0.79 AT1G50920.1
AT1G50920
Nucleolar GTP-binding protein
Chr1_-_638681 0.79 AT1G02870.1
AT1G02870
nucleolar-like protein
Chr2_-_16451878 0.79 AT2G39390.1
AT2G39390
Ribosomal L29 family protein
Chr3_-_7892349 0.78 AT3G22320.1
NRPB5
Eukaryotic rpb5 RNA polymerase subunit family protein
Chr3_+_19648880 0.78 AT3G52990.2
AT3G52990
Pyruvate kinase family protein
Chr1_-_27732683 0.77 AT1G73730.1
EIL3
ETHYLENE-INSENSITIVE3-like 3
Chr3_+_7541384 0.77 AT3G21420.1
LBO1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_-_27232996 0.77 AT1G72320.3
AT1G72320.2
AT1G72320.1
AT1G72320.4
PUM23
pumilio 23
Chr4_-_18370698 0.77 AT4G39510.1
CYP96A12
cytochrome P450, family 96, subfamily A, polypeptide 12
Chr1_+_15976805 0.77 AT1G42550.1
PMI1
plastid movement impaired1
Chr5_-_22972690 0.77 AT5G56795.1
MT1B
metallothionein 1B
Chr4_+_15330993 0.76 AT4G31650.2
AT4G31650.1
AT4G31650
Transcriptional factor B3 family protein
Chr5_+_2794388 0.76 AT5G08620.1
STRS2
DEA(D/H)-box RNA helicase family protein
Chr3_+_6266946 0.76 AT3G18280.2
AT3G18280.1
AT3G18280
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_+_8668772 0.76 AT3G23990.1
HSP60
heat shock protein 60
Chr3_+_19648711 0.76 AT3G52990.1
AT3G52990
Pyruvate kinase family protein
Chr3_+_4924777 0.76 AT3G14660.3
AT3G14660.1
AT3G14660.2
CYP72A13
cytochrome P450, family 72, subfamily A, polypeptide 13
Chr4_-_8079408 0.76 AT4G13980.1
AT-HSFA5
winged-helix DNA-binding transcription factor family protein
Chr1_+_18310428 0.76 AT1G49470.1
AT1G49470
transmembrane epididymal protein (DUF716)
Chr4_+_11773221 0.76 AT4G22270.2
AT4G22270.1
MRB1
transmembrane protein, putative (DUF3537)
Chr2_-_15092353 0.76 AT2G35940.3
AT2G35940.1
BLH1
BEL1-like homeodomain 1
Chr1_+_25746994 0.76 AT1G68570.2
AT1G68570
Major facilitator superfamily protein
Chr4_+_16548600 0.76 AT4G34670.1
AT4G34670
Ribosomal protein S3Ae
Chr3_+_6393747 0.76 AT3G18560.1
AT3G18560
hypothetical protein
Chr1_-_6506542 0.76 AT1G18850.1
AT1G18850
hypothetical protein
Chr3_+_4544364 0.75 AT3G13810.5
AT3G13810.3
AT3G13810.4
AT3G13810.6
AT3G13810.2
AT3G13810.1
IDD11
indeterminate(ID)-domain 11
Chr5_-_20164729 0.75 AT5G49660.1
XIP1
Leucine-rich repeat transmembrane protein kinase family protein
Chr3_-_17537546 0.75 AT3G47590.2
AT3G47590.1
AT3G47590
alpha/beta-Hydrolases superfamily protein
Chr5_+_5141035 0.75 AT5G15750.1
AT5G15750
Alpha-L RNA-binding motif/Ribosomal protein S4 family protein
Chr1_+_3453191 0.75 AT1G10490.1
AT1G10490.2
AT1G10490
GNAT acetyltransferase (DUF699)
Chr1_-_21953480 0.74 AT1G59730.1
TH7
thioredoxin H-type 7
Chr3_+_5008676 0.74 AT3G14890.1
AT3G14890.2
AT3G14890
phosphoesterase
Chr1_+_26032827 0.74 AT1G69250.2
AT1G69250
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
Chr5_-_6684744 0.74 AT5G19770.1
TUA3
tubulin alpha-3
Chr3_+_5539631 0.74 AT3G16340.2
ABCG29
pleiotropic drug resistance 1
Chr3_+_3285832 0.74 AT3G10530.1
AT3G10530
Transducin/WD40 repeat-like superfamily protein
Chr5_-_6591305 0.73 AT5G19530.1
AT5G19530.2
ACL5
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_+_22757761 0.73 AT3G61490.1
AT3G61490.4
AT3G61490.2
AT3G61490
Pectin lyase-like superfamily protein
Chr1_+_1906963 0.73 AT1G06230.4
AT1G06230.3
AT1G06230.2
AT1G06230.1
GTE4
global transcription factor group E4
Chr5_+_19005547 0.73 AT5G46840.1
AT5G46840.2
AT5G46840
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr1_+_20577377 0.73 AT1G55160.1
AT1G55160
WAS/WASL-interacting family protein
Chr5_+_7328870 0.73 AT5G22100.1
AT5G22100
RNA cyclase family protein
Chr5_-_23599353 0.73 AT5G58380.1
SIP1
SOS3-interacting protein 1
Chr3_+_5539385 0.73 AT3G16340.1
ABCG29
pleiotropic drug resistance 1
Chr1_+_26032637 0.73 AT1G69250.1
AT1G69250
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
Chr5_-_5251179 0.73 AT5G16070.1
AT5G16070
TCP-1/cpn60 chaperonin family protein
Chr2_+_8575785 0.72 AT2G19870.1
AT2G19870
tRNA/rRNA methyltransferase (SpoU) family protein
Chr2_-_15352013 0.72 AT2G36620.1
RPL24A
ribosomal protein L24
Chr1_-_29002135 0.72 AT1G77180.1
AT1G77180.3
AT1G77180.2
SKIP
chromatin protein family
Chr1_+_2635939 0.72 AT1G08360.1
AT1G08360
Ribosomal protein L1p/L10e family
Chr3_+_16818347 0.72 AT3G45780.2
PHOT1
phototropin 1
Chr5_-_7820760 0.72 AT5G23220.1
NIC3
nicotinamidase 3
Chr3_+_10338148 0.72 AT3G27880.1
AT3G27880
hypothetical protein (DUF1645)
Chr5_-_9259028 0.72 AT5G26360.1
AT5G26360
TCP-1/cpn60 chaperonin family protein
Chr4_+_994726 0.72 AT4G02280.1
SUS3
sucrose synthase 3
Chr4_-_6718550 0.72 AT4G10960.1
UGE5
UDP-D-glucose/UDP-D-galactose 4-epimerase 5
Chr1_-_6153982 0.71 AT1G17880.1
BTF3
basic transcription factor 3
Chr3_-_1624819 0.71 AT3G05600.2
AT3G05600.1
AT3G05600
alpha/beta-Hydrolases superfamily protein
Chr5_-_21724642 0.71 AT5G53490.3
AT5G53490.2
AT5G53490.1
AT5G53490.4
AT5G53490
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_-_16856771 0.71 AT2G40360.2
AT2G40360.1
AT2G40360
Transducin/WD40 repeat-like superfamily protein
Chr1_-_25710989 0.71 AT1G68520.1
BBX14
B-box type zinc finger protein with CCT domain-containing protein
Chr2_-_13005600 0.71 AT2G30520.2
AT2G30520.3
AT2G30520.1
RPT2
Phototropic-responsive NPH3 family protein
Chr2_-_1846912 0.71 AT2G05120.2
AT2G05120.1
AT2G05120
Nucleoporin, Nup133/Nup155-like protein
Chr2_+_8262696 0.71 AT2G19080.2
AT2G19080.1
AT2G19080
metaxin-like protein
Chr5_+_642554 0.71 AT5G02820.1
RHL2
Spo11/DNA topoisomerase VI, subunit A protein
Chr5_+_26732795 0.71 AT5G66950.1
AT5G66950
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Chr2_-_19431821 0.71 AT2G47330.1
AT2G47330
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_+_23527570 0.71 AT1G63440.1
HMA5
heavy metal atpase 5
Chr3_-_16074929 0.71 AT3G44450.1
AT3G44450
hypothetical protein
Chr3_-_20427384 0.71 AT3G55110.1
ABCG18
ABC-2 type transporter family protein
Chr4_+_12456342 0.70 AT4G23990.1
CSLG3
cellulose synthase like G3
Chr1_-_17995326 0.70 AT1G48650.2
AT1G48650.1
AT1G48650
DEA(D/H)-box RNA helicase family protein
Chr5_-_24456115 0.70 AT5G60790.1
ABCF1
ABC transporter family protein
Chr5_-_13859013 0.70 AT5G35680.3
AT5G35680.2
AT5G35680.1
AT5G35680
Nucleic acid-binding, OB-fold-like protein
Chr5_+_21661444 0.70 AT5G53400.1
BOB1
HSP20-like chaperones superfamily protein
Chr3_-_8393467 0.70 AT3G23430.1
PHO1
phosphate 1
Chr5_+_21607410 0.70 AT5G53280.1
PDV1
plastid division1
Chr1_+_1889362 0.70 AT1G06180.1
MYB13
myb domain protein 13
Chr3_+_16816721 0.69 AT3G45780.1
PHOT1
phototropin 1
Chr1_+_21868190 0.69 AT1G59530.1
bZIP4
basic leucine-zipper 4
Chr5_+_15903279 0.69 AT5G39740.1
AT5G39740.2
RPL5B
ribosomal protein L5 B
Chr1_+_29900443 0.69 AT1G79490.1
EMB2217
Pentatricopeptide repeat (PPR) superfamily protein
Chr2_-_16210428 0.69 AT2G38770.1
EMB2765
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_-_28198945 0.69 AT1G75120.1
RRA1
Nucleotide-diphospho-sugar transferase family protein
Chr4_+_10875233 0.69 AT4G20110.2
AT4G20110.1
VSR7
VACUOLAR SORTING RECEPTOR 7
Chr1_+_4467094 0.68 AT1G13110.1
CYP71B7
cytochrome P450, family 71 subfamily B, polypeptide 7
Chr1_-_25885261 0.68 AT1G68850.1
AT1G68850
Peroxidase superfamily protein
Chr3_+_21218981 0.68 AT3G57340.2
AT3G57340
DnaJ heat shock amino-terminal domain protein (DUF1977)
Chr4_+_10359877 0.68 AT4G18905.1
AT4G18905.2
AT4G18905
Transducin/WD40 repeat-like superfamily protein
Chr3_+_406588 0.68 AT3G02200.2
AT3G02200
Proteasome component (PCI) domain protein
Chr1_-_13698739 0.68 AT1G36370.1
SHM7
serine hydroxymethyltransferase 7
Chr5_+_19144601 0.68 AT5G47140.1
GATA27
GATA transcription factor 27
Chr3_-_16876083 0.68 AT3G45900.1
AT3G45900
Ribonuclease P protein subunit P38-like protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G67580

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 2.6 GO:0072351 nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351)
0.5 1.6 GO:0019593 hexitol metabolic process(GO:0006059) hexitol biosynthetic process(GO:0019406) mannitol biosynthetic process(GO:0019593) mannitol metabolic process(GO:0019594)
0.5 2.1 GO:0033499 galactose catabolic process(GO:0019388) galactose catabolic process via UDP-galactose(GO:0033499)
0.5 1.8 GO:0045948 positive regulation of translational initiation(GO:0045948)
0.4 2.1 GO:0000393 spliceosomal conformational changes to generate catalytic conformation(GO:0000393)
0.4 1.2 GO:0001738 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.3 1.0 GO:0034727 lysosomal microautophagy(GO:0016237) piecemeal microautophagy of nucleus(GO:0034727) single-organism membrane invagination(GO:1902534)
0.3 1.0 GO:0031120 snRNA pseudouridine synthesis(GO:0031120)
0.3 1.0 GO:0030970 retrograde protein transport, ER to cytosol(GO:0030970) endoplasmic reticulum to cytosol transport(GO:1903513)
0.3 1.5 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.3 1.1 GO:0006427 histidyl-tRNA aminoacylation(GO:0006427)
0.3 1.4 GO:0034763 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.3 1.4 GO:0010201 response to continuous far red light stimulus by the high-irradiance response system(GO:0010201)
0.3 1.1 GO:0055073 cadmium ion homeostasis(GO:0055073)
0.3 9.0 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.3 2.4 GO:0071490 cellular response to far red light(GO:0071490)
0.3 1.3 GO:0071786 endoplasmic reticulum tubular network organization(GO:0071786)
0.3 0.8 GO:1902066 regulation of cell wall pectin metabolic process(GO:1902066)
0.3 1.3 GO:0001732 formation of cytoplasmic translation initiation complex(GO:0001732)
0.2 1.5 GO:0070981 L-asparagine biosynthetic process(GO:0070981) L-asparagine metabolic process(GO:0070982)
0.2 0.7 GO:1990882 rRNA acetylation involved in maturation of SSU-rRNA(GO:1904812) rRNA acetylation(GO:1990882) RNA acetylation(GO:1990884)
0.2 1.0 GO:0045682 regulation of epithelial cell differentiation(GO:0030856) regulation of epidermal cell differentiation(GO:0045604) regulation of epidermis development(GO:0045682)
0.2 0.7 GO:0071258 cellular response to gravity(GO:0071258)
0.2 2.3 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.2 1.4 GO:0072344 rescue of stalled ribosome(GO:0072344)
0.2 0.5 GO:0061014 positive regulation of mRNA catabolic process(GO:0061014)
0.2 0.7 GO:0006424 glutamyl-tRNA aminoacylation(GO:0006424) glutaminyl-tRNA aminoacylation(GO:0006425)
0.2 0.9 GO:0000055 ribosomal large subunit export from nucleus(GO:0000055)
0.2 0.9 GO:0035865 cellular response to potassium ion(GO:0035865)
0.2 1.1 GO:0009647 skotomorphogenesis(GO:0009647)
0.2 0.8 GO:0000478 endonucleolytic cleavage involved in rRNA processing(GO:0000478)
0.2 1.5 GO:0032973 amino acid export(GO:0032973)
0.2 1.0 GO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery(GO:0000972)
0.2 1.6 GO:0034471 rRNA 5'-end processing(GO:0000967) ncRNA 5'-end processing(GO:0034471)
0.2 2.4 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.2 0.6 GO:0071763 nuclear membrane organization(GO:0071763)
0.2 0.6 GO:0034067 protein localization to Golgi apparatus(GO:0034067)
0.2 0.7 GO:1902916 regulation of protein polyubiquitination(GO:1902914) positive regulation of protein polyubiquitination(GO:1902916)
0.2 0.5 GO:0090213 regulation of radial pattern formation(GO:0090213)
0.2 0.7 GO:0010480 microsporocyte differentiation(GO:0010480)
0.2 0.9 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.2 0.5 GO:0045911 positive regulation of DNA recombination(GO:0045911)
0.2 0.3 GO:0046898 response to cycloheximide(GO:0046898) cellular response to external biotic stimulus(GO:0071217)
0.2 3.9 GO:0000470 maturation of LSU-rRNA(GO:0000470)
0.2 1.2 GO:0090548 response to nitrate starvation(GO:0090548)
0.2 0.7 GO:1901334 lactone metabolic process(GO:1901334) lactone biosynthetic process(GO:1901336) strigolactone metabolic process(GO:1901600) strigolactone biosynthetic process(GO:1901601)
0.2 0.7 GO:0015692 lead ion transport(GO:0015692)
0.2 1.6 GO:0010358 leaf shaping(GO:0010358)
0.2 1.0 GO:0048439 flower morphogenesis(GO:0048439)
0.2 1.0 GO:0007097 nuclear migration(GO:0007097) establishment of nucleus localization(GO:0040023) nucleus localization(GO:0051647)
0.2 1.0 GO:1902326 positive regulation of chlorophyll biosynthetic process(GO:1902326)
0.2 0.5 GO:0015786 GDP-fucose transport(GO:0015783) UDP-glucose transport(GO:0015786)
0.2 0.5 GO:0007019 microtubule depolymerization(GO:0007019)
0.2 2.4 GO:0048496 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.2 0.6 GO:0033353 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.2 0.9 GO:0010086 embryonic root morphogenesis(GO:0010086)
0.2 0.5 GO:0010288 response to lead ion(GO:0010288)
0.2 0.9 GO:0031118 rRNA pseudouridine synthesis(GO:0031118)
0.2 0.5 GO:0033194 response to hydroperoxide(GO:0033194) response to methyl methanesulfonate(GO:0072702)
0.2 1.5 GO:0010098 suspensor development(GO:0010098)
0.1 0.4 GO:0000494 box C/D snoRNA 3'-end processing(GO:0000494) peptidyl-glutamine methylation(GO:0018364) box C/D snoRNA metabolic process(GO:0033967) box C/D snoRNA processing(GO:0034963) histone glutamine methylation(GO:1990258)
0.1 0.4 GO:0090143 nucleoid organization(GO:0090143)
0.1 0.6 GO:0001887 selenium compound metabolic process(GO:0001887)
0.1 1.2 GO:0042138 meiotic DNA double-strand break formation(GO:0042138)
0.1 0.6 GO:0090308 regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309)
0.1 1.5 GO:0010106 cellular response to iron ion starvation(GO:0010106)
0.1 0.4 GO:0070207 protein homotrimerization(GO:0070207)
0.1 2.5 GO:0010540 basipetal auxin transport(GO:0010540)
0.1 2.0 GO:0043248 proteasome assembly(GO:0043248)
0.1 1.1 GO:1900425 negative regulation of defense response to bacterium(GO:1900425)
0.1 0.4 GO:0046037 GMP biosynthetic process(GO:0006177) GMP metabolic process(GO:0046037)
0.1 1.1 GO:0034724 DNA replication-independent nucleosome organization(GO:0034724)
0.1 2.5 GO:0042273 ribosomal large subunit biogenesis(GO:0042273)
0.1 0.4 GO:1901403 positive regulation of cofactor metabolic process(GO:0051194) positive regulation of tetrapyrrole metabolic process(GO:1901403)
0.1 0.4 GO:0033240 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
0.1 1.1 GO:0016444 somatic cell DNA recombination(GO:0016444)
0.1 0.4 GO:0042787 protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:0042787) regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:2000058)
0.1 0.4 GO:0035493 SNARE complex assembly(GO:0035493)
0.1 1.3 GO:1904030 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.1 0.1 GO:0031937 positive regulation of chromatin silencing(GO:0031937)
0.1 0.4 GO:0070827 cellular component maintenance(GO:0043954) chromatin maintenance(GO:0070827)
0.1 0.9 GO:0048578 positive regulation of long-day photoperiodism, flowering(GO:0048578)
0.1 0.6 GO:0071366 cellular response to indolebutyric acid stimulus(GO:0071366)
0.1 0.5 GO:1901562 response to paraquat(GO:1901562)
0.1 1.6 GO:1902182 shoot apical meristem development(GO:1902182)
0.1 0.5 GO:0006361 transcription initiation from RNA polymerase I promoter(GO:0006361)
0.1 0.4 GO:0006432 phenylalanyl-tRNA aminoacylation(GO:0006432)
0.1 0.4 GO:0030656 regulation of vitamin metabolic process(GO:0030656) regulation of L-ascorbic acid biosynthetic process(GO:2000082)
0.1 0.2 GO:2001009 regulation of plant-type cell wall cellulose biosynthetic process(GO:2001009)
0.1 0.9 GO:0045898 regulation of RNA polymerase II transcriptional preinitiation complex assembly(GO:0045898) positive regulation of RNA polymerase II transcriptional preinitiation complex assembly(GO:0045899)
0.1 2.1 GO:0010332 response to gamma radiation(GO:0010332)
0.1 1.0 GO:0010359 regulation of anion channel activity(GO:0010359)
0.1 1.5 GO:0002183 cytoplasmic translational initiation(GO:0002183)
0.1 0.6 GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA(GO:0000290)
0.1 0.4 GO:0042817 pyridoxal metabolic process(GO:0042817)
0.1 0.5 GO:0042256 mature ribosome assembly(GO:0042256)
0.1 0.5 GO:0016560 protein import into peroxisome matrix, docking(GO:0016560) protein to membrane docking(GO:0022615)
0.1 0.4 GO:0033615 mitochondrial proton-transporting ATP synthase complex assembly(GO:0033615)
0.1 0.7 GO:0034508 centromere complex assembly(GO:0034508)
0.1 0.7 GO:0010273 detoxification of copper ion(GO:0010273) stress response to copper ion(GO:1990169)
0.1 1.4 GO:0000338 protein deneddylation(GO:0000338)
0.1 0.3 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
0.1 0.3 GO:0045835 negative regulation of meiotic nuclear division(GO:0045835) negative regulation of meiotic cell cycle(GO:0051447)
0.1 0.8 GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay(GO:0000184)
0.1 1.5 GO:0048572 short-day photoperiodism(GO:0048572) short-day photoperiodism, flowering(GO:0048575)
0.1 0.3 GO:1902464 histone H3-K27 trimethylation(GO:0098532) regulation of histone H3-K27 trimethylation(GO:1902464)
0.1 0.5 GO:0048455 stamen formation(GO:0048455) anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.1 2.0 GO:0000387 spliceosomal snRNP assembly(GO:0000387)
0.1 0.4 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)
0.1 0.3 GO:1904580 regulation of intracellular mRNA localization(GO:1904580)
0.1 0.3 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.1 2.2 GO:0000373 Group II intron splicing(GO:0000373)
0.1 0.3 GO:0042407 cristae formation(GO:0042407)
0.1 0.6 GO:0080009 mRNA methylation(GO:0080009)
0.1 1.1 GO:0050879 circumnutation(GO:0010031) multicellular organismal movement(GO:0050879)
0.1 2.4 GO:0010167 response to nitrate(GO:0010167)
0.1 0.3 GO:0050687 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.1 1.0 GO:1903830 magnesium ion transmembrane transport(GO:1903830)
0.1 0.3 GO:0043982 histone H4-K8 acetylation(GO:0043982)
0.1 0.5 GO:1900384 regulation of flavonol biosynthetic process(GO:1900384)
0.1 0.6 GO:0006624 vacuolar protein processing(GO:0006624)
0.1 0.4 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.1 0.3 GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response(GO:0006990) positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522)
0.1 0.8 GO:0051293 establishment of mitotic spindle orientation(GO:0000132) establishment of mitotic spindle localization(GO:0040001) establishment of spindle localization(GO:0051293) establishment of spindle orientation(GO:0051294) spindle localization(GO:0051653)
0.1 0.5 GO:0001578 microtubule bundle formation(GO:0001578)
0.1 1.1 GO:0071329 cellular response to sucrose stimulus(GO:0071329)
0.1 0.9 GO:0006086 acetyl-CoA biosynthetic process from pyruvate(GO:0006086)
0.1 0.7 GO:0031539 positive regulation of anthocyanin metabolic process(GO:0031539)
0.1 0.4 GO:0061062 nematode larval development(GO:0002119) larval development(GO:0002164) regulation of nematode larval development(GO:0061062)
0.1 1.5 GO:0032958 inositol phosphate biosynthetic process(GO:0032958)
0.1 0.8 GO:0006267 pre-replicative complex assembly involved in nuclear cell cycle DNA replication(GO:0006267) pre-replicative complex assembly(GO:0036388) pre-replicative complex assembly involved in cell cycle DNA replication(GO:1902299)
0.1 1.2 GO:1901141 regulation of lignin biosynthetic process(GO:1901141)
0.1 0.8 GO:0033683 nucleotide-excision repair, DNA incision(GO:0033683)
0.1 0.3 GO:0048442 sepal development(GO:0048442) flower calyx development(GO:0048464)
0.1 0.4 GO:0035308 negative regulation of dephosphorylation(GO:0035305) negative regulation of protein dephosphorylation(GO:0035308)
0.1 0.3 GO:0007105 preprophase band assembly(GO:0000913) cytokinesis, site selection(GO:0007105) mitotic cytokinesis, site selection(GO:1902408)
0.1 0.3 GO:0015742 alpha-ketoglutarate transport(GO:0015742)
0.1 0.5 GO:0051571 positive regulation of histone H3-K4 methylation(GO:0051571)
0.1 0.4 GO:0043270 positive regulation of ion transport(GO:0043270)
0.1 0.4 GO:0080005 photosystem stoichiometry adjustment(GO:0080005)
0.1 0.6 GO:0007023 post-chaperonin tubulin folding pathway(GO:0007023)
0.1 0.5 GO:0080121 AMP transport(GO:0080121)
0.1 0.3 GO:0071452 cellular response to singlet oxygen(GO:0071452)
0.1 0.3 GO:0001894 tissue homeostasis(GO:0001894) homeostasis of number of meristem cells(GO:0007639) homeostasis of number of cells(GO:0048872) homeostasis of number of cells within a tissue(GO:0048873)
0.1 5.5 GO:0042274 ribosomal small subunit biogenesis(GO:0042274)
0.1 1.9 GO:0010020 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.1 0.5 GO:0043486 histone exchange(GO:0043486)
0.1 0.4 GO:0070676 intralumenal vesicle formation(GO:0070676)
0.1 3.8 GO:0045036 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.1 0.4 GO:0046048 UDP biosynthetic process(GO:0006225) ribonucleoside diphosphate biosynthetic process(GO:0009188) pyrimidine ribonucleoside diphosphate metabolic process(GO:0009193) pyrimidine ribonucleoside diphosphate biosynthetic process(GO:0009194) UDP metabolic process(GO:0046048)
0.1 0.9 GO:0051050 positive regulation of transport(GO:0051050)
0.1 0.6 GO:0033523 histone H2B ubiquitination(GO:0033523)
0.1 0.4 GO:0006527 arginine catabolic process(GO:0006527)
0.1 0.5 GO:0000719 photoreactive repair(GO:0000719) UV protection(GO:0009650)
0.1 0.6 GO:0010019 chloroplast-nucleus signaling pathway(GO:0010019)
0.1 3.1 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.1 0.4 GO:0007041 lysosomal transport(GO:0007041) endosome to lysosome transport(GO:0008333)
0.1 0.2 GO:0040014 regulation of multicellular organism growth(GO:0040014)
0.1 0.3 GO:0009304 tRNA transcription(GO:0009304)
0.1 2.4 GO:0002181 cytoplasmic translation(GO:0002181)
0.1 0.3 GO:0042128 nitrate metabolic process(GO:0042126) nitrate assimilation(GO:0042128)
0.1 0.3 GO:0016598 protein arginylation(GO:0016598)
0.1 2.7 GO:0044744 protein import into nucleus(GO:0006606) protein targeting to nucleus(GO:0044744)
0.1 0.2 GO:1904031 positive regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045737) positive regulation of cyclin-dependent protein kinase activity(GO:1904031)
0.1 0.2 GO:0032025 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506) response to cobalt ion(GO:0032025)
0.1 0.8 GO:0017183 peptidyl-diphthamide metabolic process(GO:0017182) peptidyl-diphthamide biosynthetic process from peptidyl-histidine(GO:0017183) peptidyl-histidine modification(GO:0018202)
0.1 0.2 GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway(GO:0071596)
0.1 0.2 GO:0000492 box C/D snoRNP assembly(GO:0000492)
0.1 0.4 GO:2001295 malonyl-CoA biosynthetic process(GO:2001295)
0.1 0.2 GO:0042353 fucose biosynthetic process(GO:0042353)
0.1 3.0 GO:0048510 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.1 0.5 GO:0007187 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger(GO:0007187) adenylate cyclase-modulating G-protein coupled receptor signaling pathway(GO:0007188)
0.1 0.3 GO:0010338 leaf formation(GO:0010338)
0.1 0.7 GO:0070131 regulation of mitochondrial translation(GO:0070129) positive regulation of mitochondrial translation(GO:0070131)
0.1 0.4 GO:1900036 positive regulation of cellular response to heat(GO:1900036)
0.1 0.1 GO:0016574 histone ubiquitination(GO:0016574)
0.1 0.7 GO:0006656 phosphatidylcholine biosynthetic process(GO:0006656)
0.1 0.5 GO:0071027 nuclear RNA surveillance(GO:0071027) nuclear mRNA surveillance(GO:0071028)
0.1 0.7 GO:0010555 response to mannitol(GO:0010555)
0.1 0.9 GO:0006265 DNA topological change(GO:0006265)
0.1 0.6 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.1 0.6 GO:0010188 response to microbial phytotoxin(GO:0010188)
0.1 0.1 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116) positive regulation of isoprenoid metabolic process(GO:0045828)
0.1 0.6 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.1 0.3 GO:1901332 negative regulation of lateral root development(GO:1901332)
0.1 1.9 GO:0071472 cellular response to salt stress(GO:0071472)
0.1 0.3 GO:0046051 UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051)
0.1 0.5 GO:0044375 regulation of peroxisome size(GO:0044375)
0.1 0.7 GO:0006559 L-phenylalanine catabolic process(GO:0006559) erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process(GO:1902222)
0.1 0.3 GO:0045815 positive regulation of gene expression, epigenetic(GO:0045815)
0.1 0.8 GO:0031053 primary miRNA processing(GO:0031053)
0.1 0.9 GO:0045723 positive regulation of fatty acid biosynthetic process(GO:0045723)
0.1 0.3 GO:1901004 ubiquinone-6 metabolic process(GO:1901004) ubiquinone-6 biosynthetic process(GO:1901006)
0.1 0.5 GO:0010438 cellular response to sulfur starvation(GO:0010438)
0.1 0.3 GO:0048480 style development(GO:0048479) stigma development(GO:0048480)
0.1 0.2 GO:0055047 generative cell mitosis(GO:0055047)
0.1 1.4 GO:0015985 ATP biosynthetic process(GO:0006754) energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986)
0.1 1.0 GO:0060429 epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855) epithelium development(GO:0060429)
0.1 0.5 GO:0045836 positive regulation of meiotic nuclear division(GO:0045836)
0.1 0.3 GO:0009557 antipodal cell differentiation(GO:0009557)
0.1 0.3 GO:0015939 pantothenate metabolic process(GO:0015939) pantothenate biosynthetic process(GO:0015940)
0.1 0.3 GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process(GO:0006207)
0.1 0.4 GO:0006598 polyamine catabolic process(GO:0006598)
0.1 1.5 GO:0034243 regulation of transcription elongation from RNA polymerase II promoter(GO:0034243)
0.1 0.3 GO:2000114 regulation of establishment of cell polarity(GO:2000114)
0.1 0.9 GO:0000154 rRNA modification(GO:0000154)
0.1 1.1 GO:0052325 cell wall pectin biosynthetic process(GO:0052325)
0.1 0.2 GO:0051703 pollen tube reception(GO:0010483) intraspecies interaction between organisms(GO:0051703)
0.1 1.1 GO:0009585 phototransduction(GO:0007602) red, far-red light phototransduction(GO:0009585)
0.1 1.5 GO:0000245 spliceosomal complex assembly(GO:0000245)
0.1 0.5 GO:0010078 maintenance of root meristem identity(GO:0010078)
0.1 0.7 GO:0006482 protein demethylation(GO:0006482) protein dealkylation(GO:0008214) histone demethylation(GO:0016577) histone lysine demethylation(GO:0070076)
0.1 0.2 GO:0010495 long-distance posttranscriptional gene silencing(GO:0010495)
0.1 0.2 GO:0015697 quaternary ammonium group transport(GO:0015697)
0.1 0.1 GO:0010269 response to selenium ion(GO:0010269)
0.1 0.1 GO:0051569 regulation of histone H3-K4 methylation(GO:0051569)
0.1 0.3 GO:0010623 programmed cell death involved in cell development(GO:0010623)
0.1 0.5 GO:0010048 vernalization response(GO:0010048)
0.1 0.3 GO:0048863 stem cell differentiation(GO:0048863)
0.1 2.3 GO:0010286 heat acclimation(GO:0010286)
0.1 0.7 GO:0045931 positive regulation of mitotic cell cycle(GO:0045931)
0.1 2.3 GO:0051084 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085)
0.1 0.1 GO:1903959 regulation of anion transmembrane transport(GO:1903959)
0.1 1.6 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.1 2.9 GO:0009631 cold acclimation(GO:0009631)
0.1 1.2 GO:0031647 regulation of protein stability(GO:0031647)
0.1 1.1 GO:0030150 protein import into mitochondrial matrix(GO:0030150)
0.1 2.1 GO:0006333 chromatin assembly or disassembly(GO:0006333)
0.1 0.5 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)
0.1 0.3 GO:0010603 regulation of cytoplasmic mRNA processing body assembly(GO:0010603)
0.1 0.4 GO:0032784 regulation of DNA-templated transcription, elongation(GO:0032784)
0.1 0.2 GO:1901001 negative regulation of response to salt stress(GO:1901001)
0.1 0.4 GO:0019243 lactate metabolic process(GO:0006089) methylglyoxal metabolic process(GO:0009438) methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione(GO:0019243) ketone catabolic process(GO:0042182) methylglyoxal catabolic process(GO:0051596) methylglyoxal catabolic process to lactate(GO:0061727)
0.1 0.7 GO:0006596 polyamine biosynthetic process(GO:0006596)
0.1 0.3 GO:0010267 production of ta-siRNAs involved in RNA interference(GO:0010267)
0.1 0.8 GO:0046501 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
0.1 0.7 GO:0042793 transcription from plastid promoter(GO:0042793)
0.1 1.5 GO:0010499 proteasomal ubiquitin-independent protein catabolic process(GO:0010499)
0.1 4.7 GO:0042254 ribosome biogenesis(GO:0042254)
0.1 0.7 GO:0009638 phototropism(GO:0009638)
0.1 0.8 GO:0009870 defense response signaling pathway, resistance gene-dependent(GO:0009870)
0.1 0.7 GO:0015996 chlorophyll catabolic process(GO:0015996)
0.1 0.7 GO:0009970 cellular response to sulfate starvation(GO:0009970)
0.0 0.3 GO:0016926 protein desumoylation(GO:0016926)
0.0 0.2 GO:0006285 base-excision repair, AP site formation(GO:0006285)
0.0 0.2 GO:0015959 diadenosine polyphosphate metabolic process(GO:0015959) diadenosine tetraphosphate metabolic process(GO:0015965)
0.0 0.4 GO:0097428 protein maturation by iron-sulfur cluster transfer(GO:0097428)
0.0 0.3 GO:0043967 histone H4 acetylation(GO:0043967)
0.0 0.4 GO:0009954 proximal/distal pattern formation(GO:0009954)
0.0 0.4 GO:0043242 negative regulation of actin filament depolymerization(GO:0030835) negative regulation of protein complex disassembly(GO:0043242) actin filament capping(GO:0051693) negative regulation of protein depolymerization(GO:1901880)
0.0 0.1 GO:2000105 positive regulation of DNA endoreduplication(GO:0032877) positive regulation of DNA-dependent DNA replication(GO:2000105)
0.0 0.1 GO:0080168 abscisic acid transport(GO:0080168)
0.0 0.5 GO:1902584 positive regulation of response to water deprivation(GO:1902584)
0.0 0.6 GO:0043044 ATP-dependent chromatin remodeling(GO:0043044)
0.0 0.7 GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway(GO:0032511)
0.0 0.2 GO:0009560 female gamete generation(GO:0007292) embryo sac egg cell differentiation(GO:0009560)
0.0 0.4 GO:0007007 inner mitochondrial membrane organization(GO:0007007)
0.0 0.2 GO:0015669 gas transport(GO:0015669)
0.0 0.8 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.0 0.2 GO:0016320 endoplasmic reticulum membrane fusion(GO:0016320)
0.0 0.1 GO:0031935 regulation of chromatin silencing(GO:0031935)
0.0 0.7 GO:0006626 protein targeting to mitochondrion(GO:0006626)
0.0 0.2 GO:0006651 diacylglycerol biosynthetic process(GO:0006651)
0.0 0.2 GO:0030322 stabilization of membrane potential(GO:0030322)
0.0 0.2 GO:0071588 hydrogen peroxide mediated signaling pathway(GO:0071588)
0.0 0.3 GO:0006379 mRNA cleavage(GO:0006379)
0.0 0.2 GO:0009726 detection of hormone stimulus(GO:0009720) detection of endogenous stimulus(GO:0009726)
0.0 0.3 GO:0016925 protein sumoylation(GO:0016925)
0.0 0.1 GO:0033477 S-methylmethionine metabolic process(GO:0033477) S-methylmethionine cycle(GO:0033528)
0.0 0.2 GO:0080175 phragmoplast microtubule organization(GO:0080175)
0.0 0.3 GO:0080148 negative regulation of response to water deprivation(GO:0080148)
0.0 0.9 GO:0016226 iron-sulfur cluster assembly(GO:0016226) metallo-sulfur cluster assembly(GO:0031163)
0.0 0.7 GO:0009880 embryonic pattern specification(GO:0009880)
0.0 0.0 GO:0051101 regulation of DNA binding(GO:0051101)
0.0 0.7 GO:0090421 embryonic meristem initiation(GO:0090421)
0.0 0.2 GO:0043693 monoterpene biosynthetic process(GO:0043693)
0.0 0.7 GO:0035196 production of miRNAs involved in gene silencing by miRNA(GO:0035196)
0.0 1.6 GO:0007062 sister chromatid cohesion(GO:0007062)
0.0 0.4 GO:0042814 monopolar cell growth(GO:0042814)
0.0 0.3 GO:1901703 protein localization involved in auxin polar transport(GO:1901703)
0.0 0.2 GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway(GO:0043162)
0.0 0.8 GO:0030422 production of siRNA involved in RNA interference(GO:0030422)
0.0 0.9 GO:0008284 positive regulation of cell proliferation(GO:0008284)
0.0 0.3 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.0 0.4 GO:0050665 hydrogen peroxide biosynthetic process(GO:0050665)
0.0 0.7 GO:0006338 chromatin remodeling(GO:0006338)
0.0 0.4 GO:0002697 regulation of immune effector process(GO:0002697) regulation of defense response to virus(GO:0050688)
0.0 0.1 GO:0034765 regulation of transmembrane transport(GO:0034762) regulation of ion transmembrane transport(GO:0034765)
0.0 0.3 GO:0052192 movement in host(GO:0044000) transport of virus in multicellular host(GO:0046739) movement in other organism involved in symbiotic interaction(GO:0051814) movement in host environment(GO:0052126) movement in environment of other organism involved in symbiotic interaction(GO:0052192)
0.0 0.4 GO:0060321 acceptance of pollen(GO:0060321)
0.0 0.7 GO:0006284 base-excision repair(GO:0006284)
0.0 0.2 GO:0071108 protein K48-linked deubiquitination(GO:0071108)
0.0 0.3 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.0 0.1 GO:0030031 cell projection organization(GO:0030030) cell projection assembly(GO:0030031)
0.0 0.7 GO:0009959 negative gravitropism(GO:0009959)
0.0 12.1 GO:0006412 translation(GO:0006412)
0.0 2.0 GO:0010029 regulation of seed germination(GO:0010029)
0.0 0.2 GO:0006406 mRNA export from nucleus(GO:0006406) mRNA transport(GO:0051028) mRNA-containing ribonucleoprotein complex export from nucleus(GO:0071427)
0.0 1.0 GO:0032984 macromolecular complex disassembly(GO:0032984)
0.0 2.1 GO:0016579 protein deubiquitination(GO:0016579)
0.0 0.1 GO:0010235 guard mother cell cytokinesis(GO:0010235)
0.0 4.1 GO:0000398 RNA splicing, via transesterification reactions(GO:0000375) RNA splicing, via transesterification reactions with bulged adenosine as nucleophile(GO:0000377) mRNA splicing, via spliceosome(GO:0000398)
0.0 0.3 GO:1904668 positive regulation of ubiquitin protein ligase activity(GO:1904668)
0.0 0.1 GO:0072502 cellular phosphate ion homeostasis(GO:0030643) cellular trivalent inorganic anion homeostasis(GO:0072502)
0.0 0.4 GO:0007020 microtubule nucleation(GO:0007020)
0.0 0.3 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.0 1.0 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.0 0.1 GO:0045332 phospholipid translocation(GO:0045332)
0.0 2.1 GO:0009845 seed germination(GO:0009845)
0.0 0.1 GO:0022613 ribonucleoprotein complex biogenesis(GO:0022613)
0.0 0.5 GO:0019852 L-ascorbic acid metabolic process(GO:0019852) L-ascorbic acid biosynthetic process(GO:0019853)
0.0 0.8 GO:0046834 lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854)
0.0 0.3 GO:0045995 regulation of embryonic development(GO:0045995)
0.0 1.0 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.0 0.1 GO:0007076 mitotic chromosome condensation(GO:0007076)
0.0 0.3 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.2 GO:0071244 cellular response to carbon dioxide(GO:0071244)
0.0 0.8 GO:0009910 negative regulation of flower development(GO:0009910)
0.0 0.2 GO:0018107 peptidyl-threonine phosphorylation(GO:0018107) peptidyl-threonine modification(GO:0018210)
0.0 0.3 GO:2001289 lipid X metabolic process(GO:2001289)
0.0 0.7 GO:0009825 multidimensional cell growth(GO:0009825)
0.0 0.3 GO:0043155 photoinhibition(GO:0010205) negative regulation of photosynthesis, light reaction(GO:0043155)
0.0 0.2 GO:0080113 regulation of seed growth(GO:0080113)
0.0 0.9 GO:0000959 mitochondrial RNA metabolic process(GO:0000959)
0.0 0.1 GO:0035404 histone-serine phosphorylation(GO:0035404) histone H3-S10 phosphorylation(GO:0043987)
0.0 2.2 GO:0006457 protein folding(GO:0006457)
0.0 0.6 GO:0010492 maintenance of shoot apical meristem identity(GO:0010492)
0.0 0.4 GO:0002764 pattern recognition receptor signaling pathway(GO:0002221) immune response-activating signal transduction(GO:0002757) innate immune response-activating signal transduction(GO:0002758) immune response-regulating signaling pathway(GO:0002764)
0.0 0.6 GO:0006814 sodium ion transport(GO:0006814)
0.0 0.1 GO:0048209 regulation of vesicle targeting, to, from or within Golgi(GO:0048209)
0.0 0.2 GO:0046482 para-aminobenzoic acid metabolic process(GO:0046482)
0.0 0.5 GO:0006074 (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075)
0.0 0.1 GO:0043970 histone H3-K9 acetylation(GO:0043970)
0.0 0.7 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 0.1 GO:0060261 regulation of transcription initiation from RNA polymerase II promoter(GO:0060260) positive regulation of transcription initiation from RNA polymerase II promoter(GO:0060261) positive regulation of DNA-templated transcription, initiation(GO:2000144)
0.0 0.1 GO:0001560 regulation of cell growth by extracellular stimulus(GO:0001560)
0.0 0.4 GO:0017038 protein import(GO:0017038)
0.0 0.2 GO:0009097 isoleucine metabolic process(GO:0006549) isoleucine biosynthetic process(GO:0009097)
0.0 0.1 GO:0019323 pentose catabolic process(GO:0019323)
0.0 0.1 GO:0006513 protein monoubiquitination(GO:0006513)
0.0 0.6 GO:0016236 macroautophagy(GO:0016236)
0.0 1.0 GO:0034605 cellular response to heat(GO:0034605)
0.0 0.3 GO:0006914 autophagy(GO:0006914)
0.0 0.5 GO:0051260 protein homooligomerization(GO:0051260)
0.0 0.2 GO:0080187 floral organ senescence(GO:0080187)
0.0 0.1 GO:0006882 cellular zinc ion homeostasis(GO:0006882)
0.0 0.5 GO:0016024 CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341)
0.0 0.6 GO:0006862 nucleotide transport(GO:0006862)
0.0 0.5 GO:0007030 Golgi organization(GO:0007030)
0.0 0.1 GO:0051056 ARF protein signal transduction(GO:0032011) regulation of ARF protein signal transduction(GO:0032012) regulation of Ras protein signal transduction(GO:0046578) regulation of small GTPase mediated signal transduction(GO:0051056)
0.0 0.2 GO:1902074 response to salt(GO:1902074)
0.0 0.1 GO:0009264 deoxyribonucleotide catabolic process(GO:0009264)
0.0 0.2 GO:0006121 mitochondrial electron transport, succinate to ubiquinone(GO:0006121)
0.0 0.5 GO:0032880 regulation of protein localization(GO:0032880)
0.0 0.4 GO:0009718 anthocyanin-containing compound biosynthetic process(GO:0009718)
0.0 0.1 GO:0046621 negative regulation of organ growth(GO:0046621)
0.0 0.2 GO:0043289 abscisic acid biosynthetic process(GO:0009688) apocarotenoid biosynthetic process(GO:0043289) tertiary alcohol biosynthetic process(GO:1902645)
0.0 0.5 GO:0043622 cortical microtubule organization(GO:0043622)
0.0 0.1 GO:0051096 regulation of helicase activity(GO:0051095) positive regulation of helicase activity(GO:0051096)
0.0 0.3 GO:0006538 glutamate catabolic process(GO:0006538)
0.0 0.3 GO:0019374 galactolipid metabolic process(GO:0019374)
0.0 0.4 GO:0090630 activation of GTPase activity(GO:0090630)
0.0 0.7 GO:0006400 tRNA modification(GO:0006400)
0.0 0.2 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.0 0.5 GO:0016575 histone deacetylation(GO:0016575)
0.0 0.2 GO:0015937 coenzyme A biosynthetic process(GO:0015937)
0.0 0.1 GO:1990641 response to iron ion starvation(GO:1990641)
0.0 0.8 GO:0042176 regulation of protein catabolic process(GO:0042176)
0.0 0.0 GO:0045717 negative regulation of fatty acid biosynthetic process(GO:0045717) negative regulation of fatty acid metabolic process(GO:0045922)
0.0 0.3 GO:0043666 regulation of phosphoprotein phosphatase activity(GO:0043666)
0.0 1.3 GO:0018209 peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209)
0.0 1.3 GO:0006261 DNA-dependent DNA replication(GO:0006261)
0.0 0.1 GO:0032204 regulation of telomere maintenance(GO:0032204)
0.0 0.0 GO:0006195 purine nucleotide catabolic process(GO:0006195) purine ribonucleotide catabolic process(GO:0009154) ribonucleotide catabolic process(GO:0009261) coenzyme A catabolic process(GO:0015938) nucleoside bisphosphate catabolic process(GO:0033869) ribonucleoside bisphosphate catabolic process(GO:0034031) purine nucleoside bisphosphate catabolic process(GO:0034034)
0.0 0.1 GO:0006370 7-methylguanosine mRNA capping(GO:0006370)
0.0 0.1 GO:0015846 polyamine transport(GO:0015846)
0.0 0.5 GO:0008380 RNA splicing(GO:0008380)
0.0 0.2 GO:0090333 regulation of stomatal closure(GO:0090333)
0.0 0.1 GO:0010215 cellulose microfibril organization(GO:0010215)
0.0 0.1 GO:0010044 response to aluminum ion(GO:0010044)
0.0 0.3 GO:0006896 Golgi to vacuole transport(GO:0006896)
0.0 0.2 GO:0009269 response to desiccation(GO:0009269)
0.0 0.2 GO:0008285 negative regulation of cell proliferation(GO:0008285)
0.0 0.1 GO:0032781 positive regulation of ATPase activity(GO:0032781) regulation of microtubule motor activity(GO:2000574) positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582)
0.0 0.1 GO:0042732 D-xylose metabolic process(GO:0042732)
0.0 0.0 GO:0048838 release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438)
0.0 0.4 GO:0009788 negative regulation of abscisic acid-activated signaling pathway(GO:0009788)
0.0 0.1 GO:0048766 root hair initiation(GO:0048766)
0.0 0.1 GO:0031425 chloroplast RNA processing(GO:0031425)
0.0 0.1 GO:0009229 thiamine diphosphate biosynthetic process(GO:0009229) thiamine diphosphate metabolic process(GO:0042357)
0.0 0.1 GO:0030244 cellulose biosynthetic process(GO:0030244)
0.0 0.0 GO:0010321 regulation of vegetative phase change(GO:0010321)
0.0 0.2 GO:0010162 seed dormancy process(GO:0010162) dormancy process(GO:0022611)
0.0 0.6 GO:0048193 Golgi vesicle transport(GO:0048193)
0.0 0.1 GO:0080151 positive regulation of salicylic acid mediated signaling pathway(GO:0080151)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.7 GO:0042788 polysomal ribosome(GO:0042788)
0.4 4.1 GO:0031428 box C/D snoRNP complex(GO:0031428)
0.4 1.1 GO:0034457 Mpp10 complex(GO:0034457)
0.3 3.5 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.3 1.5 GO:0072588 box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588)
0.3 1.1 GO:0034719 SMN-Sm protein complex(GO:0034719)
0.2 1.5 GO:0034388 Pwp2p-containing subcomplex of 90S preribosome(GO:0034388)
0.2 0.5 GO:0005687 U4 snRNP(GO:0005687)
0.2 1.2 GO:0034515 proteasome storage granule(GO:0034515)
0.2 0.9 GO:0005967 mitochondrial pyruvate dehydrogenase complex(GO:0005967)
0.2 1.5 GO:0071012 U2-type catalytic step 1 spliceosome(GO:0071006) catalytic step 1 spliceosome(GO:0071012)
0.2 0.6 GO:0005775 vacuolar lumen(GO:0005775)
0.2 2.2 GO:0008540 proteasome regulatory particle, base subcomplex(GO:0008540)
0.2 1.4 GO:0016281 eukaryotic translation initiation factor 4F complex(GO:0016281)
0.2 1.4 GO:0005682 U5 snRNP(GO:0005682)
0.2 0.5 GO:0005697 telomerase holoenzyme complex(GO:0005697)
0.2 21.7 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.2 1.0 GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098)
0.2 2.1 GO:0045298 tubulin complex(GO:0045298)
0.2 2.2 GO:0008541 proteasome regulatory particle, lid subcomplex(GO:0008541)
0.2 0.5 GO:0035101 FACT complex(GO:0035101)
0.2 0.6 GO:0005853 eukaryotic translation elongation factor 1 complex(GO:0005853)
0.1 0.4 GO:0031414 N-terminal protein acetyltransferase complex(GO:0031414) NatC complex(GO:0031417)
0.1 0.7 GO:0001401 mitochondrial sorting and assembly machinery complex(GO:0001401)
0.1 1.3 GO:1990726 Lsm1-7-Pat1 complex(GO:1990726)
0.1 0.7 GO:0000812 Swr1 complex(GO:0000812)
0.1 0.7 GO:0000922 spindle pole(GO:0000922)
0.1 0.3 GO:0044545 NSL complex(GO:0044545)
0.1 1.1 GO:0030688 preribosome, small subunit precursor(GO:0030688)
0.1 0.8 GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)(GO:0000276)
0.1 1.3 GO:0016272 prefoldin complex(GO:0016272)
0.1 0.4 GO:0005658 alpha DNA polymerase:primase complex(GO:0005658)
0.1 2.9 GO:0005665 DNA-directed RNA polymerase II, core complex(GO:0005665)
0.1 3.4 GO:0032040 small-subunit processome(GO:0032040)
0.1 0.6 GO:0010007 magnesium chelatase complex(GO:0010007)
0.1 0.4 GO:0030874 nucleolar chromatin(GO:0030874)
0.1 7.2 GO:0009707 chloroplast outer membrane(GO:0009707)
0.1 1.1 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.1 0.8 GO:0032153 cell division site(GO:0032153)
0.1 0.5 GO:0030870 Mre11 complex(GO:0030870)
0.1 1.4 GO:0008180 COP9 signalosome(GO:0008180)
0.1 1.9 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.1 0.8 GO:0005844 polysome(GO:0005844)
0.1 0.8 GO:0033180 proton-transporting V-type ATPase, V1 domain(GO:0033180)
0.1 2.2 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.1 1.1 GO:0042555 MCM complex(GO:0042555)
0.1 1.5 GO:0030687 preribosome, large subunit precursor(GO:0030687)
0.1 1.2 GO:0005663 DNA replication factor C complex(GO:0005663)
0.1 10.6 GO:0022627 cytosolic small ribosomal subunit(GO:0022627)
0.1 0.3 GO:0097361 CIA complex(GO:0097361)
0.1 0.7 GO:0031372 ubiquitin conjugating enzyme complex(GO:0031371) UBC13-MMS2 complex(GO:0031372)
0.1 1.4 GO:0000407 pre-autophagosomal structure(GO:0000407)
0.1 0.4 GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)
0.1 0.4 GO:0043614 multi-eIF complex(GO:0043614)
0.1 0.2 GO:0022624 proteasome regulatory particle(GO:0005838) proteasome accessory complex(GO:0022624)
0.1 1.7 GO:0019773 proteasome core complex, alpha-subunit complex(GO:0019773)
0.1 0.5 GO:0005688 U6 snRNP(GO:0005688)
0.1 0.5 GO:0071014 post-mRNA release spliceosomal complex(GO:0071014)
0.1 0.4 GO:0031314 extrinsic component of mitochondrial inner membrane(GO:0031314)
0.1 1.1 GO:0005736 DNA-directed RNA polymerase I complex(GO:0005736)
0.1 0.7 GO:0044452 nucleolar part(GO:0044452)
0.1 0.6 GO:0015030 Cajal body(GO:0015030)
0.1 1.3 GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane(GO:0071458) cytoplasmic side of endoplasmic reticulum membrane(GO:0098554)
0.1 0.6 GO:0000974 Prp19 complex(GO:0000974)
0.1 0.4 GO:0042721 mitochondrial inner membrane protein insertion complex(GO:0042721)
0.1 0.5 GO:0033597 mitotic checkpoint complex(GO:0033597)
0.1 0.9 GO:0008278 cohesin complex(GO:0008278)
0.1 0.2 GO:0005846 nuclear cap binding complex(GO:0005846)
0.1 0.5 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.1 1.1 GO:0031965 nuclear membrane(GO:0031965)
0.1 0.4 GO:0033263 CORVET complex(GO:0033263)
0.1 0.5 GO:0035145 exon-exon junction complex(GO:0035145)
0.1 0.3 GO:0000312 plastid small ribosomal subunit(GO:0000312)
0.1 0.6 GO:0098552 side of membrane(GO:0098552)
0.1 0.4 GO:0000164 protein phosphatase type 1 complex(GO:0000164)
0.1 1.7 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.1 0.4 GO:0035061 interchromatin granule(GO:0035061)
0.1 0.7 GO:0017119 Golgi transport complex(GO:0017119)
0.1 0.6 GO:0000326 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.1 1.5 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.1 0.6 GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)(GO:0045261)
0.1 0.1 GO:0000439 core TFIIH complex(GO:0000439)
0.1 2.0 GO:0071013 catalytic step 2 spliceosome(GO:0071013)
0.1 0.6 GO:0045252 oxoglutarate dehydrogenase complex(GO:0045252)
0.1 1.1 GO:0008023 transcription elongation factor complex(GO:0008023)
0.1 2.1 GO:0005643 nuclear pore(GO:0005643)
0.1 16.8 GO:0005730 nucleolus(GO:0005730)
0.1 0.4 GO:0070652 HAUS complex(GO:0070652)
0.1 0.5 GO:0035619 root hair tip(GO:0035619)
0.1 1.5 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.1 0.9 GO:0000124 SAGA complex(GO:0000124)
0.1 0.8 GO:0031231 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.1 0.2 GO:0005674 transcription factor TFIIF complex(GO:0005674)
0.1 2.4 GO:0016592 mediator complex(GO:0016592)
0.1 0.4 GO:0000786 nucleosome(GO:0000786)
0.1 0.5 GO:0009840 chloroplastic endopeptidase Clp complex(GO:0009840)
0.1 1.6 GO:0030981 cortical microtubule cytoskeleton(GO:0030981)
0.1 0.8 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)
0.1 0.5 GO:0000347 THO complex(GO:0000347)
0.1 1.4 GO:0034708 methyltransferase complex(GO:0034708)
0.1 5.0 GO:0000790 nuclear chromatin(GO:0000790)
0.1 0.3 GO:0000408 EKC/KEOPS complex(GO:0000408)
0.1 0.4 GO:0010445 nuclear dicing body(GO:0010445)
0.1 2.1 GO:0042644 chloroplast nucleoid(GO:0042644)
0.0 0.3 GO:0071010 U2-type prespliceosome(GO:0071004) prespliceosome(GO:0071010)
0.0 1.1 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 0.4 GO:0000813 ESCRT I complex(GO:0000813)
0.0 0.2 GO:0018444 translation release factor complex(GO:0018444)
0.0 0.6 GO:0000776 kinetochore(GO:0000776)
0.0 2.5 GO:0016604 nuclear body(GO:0016604)
0.0 0.3 GO:0070390 transcription export complex 2(GO:0070390)
0.0 0.9 GO:0031903 peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903)
0.0 0.5 GO:0005769 early endosome(GO:0005769)
0.0 1.2 GO:0005635 nuclear envelope(GO:0005635)
0.0 0.5 GO:0030131 clathrin adaptor complex(GO:0030131)
0.0 0.2 GO:0001673 male germ cell nucleus(GO:0001673)
0.0 0.6 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.0 0.1 GO:0034518 mRNA cap binding complex(GO:0005845) RNA cap binding complex(GO:0034518)
0.0 0.1 GO:0016323 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.0 0.1 GO:0000780 condensed nuclear chromosome, centromeric region(GO:0000780)
0.0 0.3 GO:0000178 exosome (RNase complex)(GO:0000178)
0.0 0.1 GO:0042645 mitochondrial nucleoid(GO:0042645)
0.0 2.6 GO:0042025 host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)
0.0 1.4 GO:0030964 mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)
0.0 0.2 GO:0005850 eukaryotic translation initiation factor 2 complex(GO:0005850)
0.0 0.1 GO:0030141 secretory granule(GO:0030141)
0.0 0.3 GO:0005744 mitochondrial inner membrane presequence translocase complex(GO:0005744)
0.0 2.8 GO:0005667 transcription factor complex(GO:0005667)
0.0 0.1 GO:0000796 condensin complex(GO:0000796)
0.0 0.3 GO:0030904 retromer complex(GO:0030904)
0.0 0.3 GO:0000794 condensed nuclear chromosome(GO:0000794)
0.0 0.5 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.0 0.1 GO:0048476 Holliday junction resolvase complex(GO:0048476)
0.0 0.2 GO:0005684 U2-type spliceosomal complex(GO:0005684)
0.0 0.3 GO:0045257 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)(GO:0005749) succinate dehydrogenase complex (ubiquinone)(GO:0045257) fumarate reductase complex(GO:0045283)
0.0 0.7 GO:0019898 extrinsic component of membrane(GO:0019898)
0.0 0.3 GO:0005666 DNA-directed RNA polymerase III complex(GO:0005666)
0.0 0.5 GO:0000118 histone deacetylase complex(GO:0000118)
0.0 0.2 GO:0055037 recycling endosome(GO:0055037)
0.0 0.2 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.0 0.9 GO:0031978 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.0 0.1 GO:0031390 Ctf18 RFC-like complex(GO:0031390)
0.0 2.4 GO:0015630 microtubule cytoskeleton(GO:0015630)
0.0 1.1 GO:0005797 Golgi medial cisterna(GO:0005797)
0.0 0.5 GO:0030136 clathrin-coated vesicle(GO:0030136)
0.0 0.1 GO:0005847 mRNA cleavage and polyadenylation specificity factor complex(GO:0005847)
0.0 0.5 GO:0031228 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.0 0.3 GO:0000785 chromatin(GO:0000785)
0.0 0.1 GO:0031083 BLOC complex(GO:0031082) BLOC-1 complex(GO:0031083)
0.0 0.1 GO:0016514 SWI/SNF complex(GO:0016514) BAF-type complex(GO:0090544)
0.0 7.4 GO:0005774 vacuolar membrane(GO:0005774)
0.0 0.1 GO:0072546 ER membrane protein complex(GO:0072546)
0.0 0.0 GO:0043625 delta DNA polymerase complex(GO:0043625)
0.0 1.0 GO:0005694 chromosome(GO:0005694)
0.0 0.3 GO:0000137 Golgi cis cisterna(GO:0000137)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.1 GO:0004034 aldose 1-epimerase activity(GO:0004034)
0.6 2.6 GO:0030410 nicotianamine synthase activity(GO:0030410)
0.5 1.5 GO:0000823 inositol-1,4,5-trisphosphate 6-kinase activity(GO:0000823) inositol tetrakisphosphate 3-kinase activity(GO:0000824) inositol-1,4,5-trisphosphate 3-kinase activity(GO:0008440) inositol tetrakisphosphate 5-kinase activity(GO:0047326)
0.5 1.5 GO:0004071 aspartate-ammonia ligase activity(GO:0004071)
0.5 1.5 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.5 1.4 GO:0005078 MAP-kinase scaffold activity(GO:0005078) protein kinase C binding(GO:0005080) protein complex scaffold(GO:0032947) signaling adaptor activity(GO:0035591)
0.4 2.8 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.4 1.1 GO:0009671 nitrate:proton symporter activity(GO:0009671)
0.3 1.0 GO:0043425 bHLH transcription factor binding(GO:0043425)
0.3 0.9 GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor(GO:0052592)
0.3 1.2 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.3 1.1 GO:0004821 histidine-tRNA ligase activity(GO:0004821)
0.3 1.1 GO:0004534 5'-3' exoribonuclease activity(GO:0004534)
0.3 1.6 GO:0030544 Hsp70 protein binding(GO:0030544)
0.3 1.8 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
0.2 0.7 GO:1990883 rRNA cytidine N-acetyltransferase activity(GO:1990883)
0.2 0.7 GO:0008936 nicotinamidase activity(GO:0008936)
0.2 0.9 GO:0009885 transmembrane receptor histidine kinase activity(GO:0009784) transmembrane histidine kinase cytokinin receptor activity(GO:0009885)
0.2 0.9 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.2 0.7 GO:0050997 phosphatidylcholine binding(GO:0031210) quaternary ammonium group binding(GO:0050997)
0.2 0.7 GO:0004819 glutamine-tRNA ligase activity(GO:0004819)
0.2 1.1 GO:0015186 L-glutamine transmembrane transporter activity(GO:0015186)
0.2 4.5 GO:0030515 snoRNA binding(GO:0030515)
0.2 2.3 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.2 0.6 GO:0008311 phosphodiesterase I activity(GO:0004528) double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311)
0.2 1.2 GO:0030619 U1 snRNA binding(GO:0030619)
0.2 0.6 GO:0036402 proteasome-activating ATPase activity(GO:0036402)
0.2 1.5 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.2 1.3 GO:0046975 histone methyltransferase activity (H3-K36 specific)(GO:0046975)
0.2 0.7 GO:0046481 digalactosyldiacylglycerol synthase activity(GO:0046481)
0.2 1.5 GO:0004869 cysteine-type endopeptidase inhibitor activity(GO:0004869)
0.2 0.5 GO:0070034 telomerase RNA binding(GO:0070034)
0.2 0.5 GO:0052629 phosphatidylinositol-3-phosphatase activity(GO:0004438) phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.2 0.8 GO:0003680 AT DNA binding(GO:0003680)
0.2 1.0 GO:0017070 U6 snRNA binding(GO:0017070)
0.2 0.5 GO:0019136 deoxynucleoside kinase activity(GO:0019136)
0.2 1.4 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.2 1.6 GO:0061505 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.2 0.5 GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity(GO:0000179)
0.1 0.7 GO:0016768 spermine synthase activity(GO:0016768)
0.1 0.9 GO:0016841 ammonia-lyase activity(GO:0016841)
0.1 0.3 GO:0004652 polynucleotide adenylyltransferase activity(GO:0004652)
0.1 0.4 GO:0019776 Atg8 ligase activity(GO:0019776)
0.1 2.0 GO:0008097 5S rRNA binding(GO:0008097)
0.1 0.4 GO:0000386 second spliceosomal transesterification activity(GO:0000386)
0.1 2.2 GO:0061608 nuclear import signal receptor activity(GO:0061608)
0.1 0.5 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
0.1 1.2 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.1 0.4 GO:0016041 glutamate synthase (ferredoxin) activity(GO:0016041) oxidoreductase activity, acting on the CH-NH2 group of donors, iron-sulfur protein as acceptor(GO:0016643)
0.1 0.3 GO:0051766 inositol trisphosphate kinase activity(GO:0051766)
0.1 0.7 GO:0035197 siRNA binding(GO:0035197)
0.1 0.7 GO:0004781 sulfate adenylyltransferase (ATP) activity(GO:0004781)
0.1 1.0 GO:0032266 phosphatidylinositol-3-phosphate binding(GO:0032266)
0.1 0.9 GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity(GO:0004739)
0.1 0.6 GO:0050734 hydroxycinnamoyltransferase activity(GO:0050734)
0.1 0.4 GO:0004826 phenylalanine-tRNA ligase activity(GO:0004826)
0.1 1.0 GO:0019843 rRNA binding(GO:0019843)
0.1 1.1 GO:0000339 RNA cap binding(GO:0000339)
0.1 0.4 GO:0008174 mRNA methyltransferase activity(GO:0008174)
0.1 0.5 GO:0005460 UDP-glucose transmembrane transporter activity(GO:0005460)
0.1 0.5 GO:0000268 peroxisome targeting sequence binding(GO:0000268)
0.1 0.8 GO:0008022 protein C-terminus binding(GO:0008022)
0.1 1.1 GO:0043023 ribosomal large subunit binding(GO:0043023)
0.1 0.5 GO:0032791 lead ion binding(GO:0032791)
0.1 1.7 GO:0031369 translation initiation factor binding(GO:0031369)
0.1 0.4 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
0.1 0.3 GO:0046409 p-coumarate 3-hydroxylase activity(GO:0046409)
0.1 0.9 GO:0005546 phosphatidylinositol-4,5-bisphosphate binding(GO:0005546) phosphatidylinositol bisphosphate binding(GO:1902936)
0.1 1.1 GO:0090079 translation regulator activity, nucleic acid binding(GO:0090079)
0.1 2.2 GO:0070122 isopeptidase activity(GO:0070122)
0.1 0.5 GO:0043024 ribosomal small subunit binding(GO:0043024)
0.1 0.4 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.1 0.4 GO:0005254 voltage-gated chloride channel activity(GO:0005247) chloride channel activity(GO:0005254)
0.1 0.3 GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity(GO:0008534)
0.1 0.6 GO:0051003 magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003)
0.1 0.4 GO:0000035 acyl binding(GO:0000035)
0.1 0.8 GO:0004003 ATP-dependent DNA helicase activity(GO:0004003) ATP-dependent helicase activity(GO:0008026) single-stranded DNA-dependent ATP-dependent DNA helicase activity(GO:0017116) single-stranded DNA-dependent ATPase activity(GO:0043142) purine NTP-dependent helicase activity(GO:0070035)
0.1 0.5 GO:1990825 sequence-specific mRNA binding(GO:1990825)
0.1 1.5 GO:0031420 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.1 0.7 GO:0048027 mRNA 5'-UTR binding(GO:0048027)
0.1 0.4 GO:0004075 biotin carboxylase activity(GO:0004075)
0.1 1.2 GO:0003689 DNA clamp loader activity(GO:0003689) protein-DNA loading ATPase activity(GO:0033170)
0.1 23.7 GO:0003735 structural constituent of ribosome(GO:0003735)
0.1 2.1 GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538)
0.1 0.6 GO:0048487 beta-tubulin binding(GO:0048487)
0.1 0.4 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.1 0.5 GO:0080122 AMP transmembrane transporter activity(GO:0080122)
0.1 1.5 GO:0016018 cyclosporin A binding(GO:0016018)
0.1 1.7 GO:0015086 cadmium ion transmembrane transporter activity(GO:0015086)
0.1 0.3 GO:0015026 coreceptor activity(GO:0015026)
0.1 1.5 GO:0008536 Ran GTPase binding(GO:0008536)
0.1 1.1 GO:0004930 G-protein coupled receptor activity(GO:0004930)
0.1 2.0 GO:0022821 potassium ion antiporter activity(GO:0022821)
0.1 0.4 GO:0016034 maleylacetoacetate isomerase activity(GO:0016034)
0.1 1.4 GO:0019903 protein phosphatase binding(GO:0019903)
0.1 0.4 GO:0033862 UMP kinase activity(GO:0033862)
0.1 1.8 GO:0031491 nucleosome binding(GO:0031491)
0.1 0.5 GO:0003913 DNA photolyase activity(GO:0003913)
0.1 0.6 GO:0005047 signal recognition particle binding(GO:0005047)
0.1 0.5 GO:0030527 structural constituent of chromatin(GO:0030527)
0.1 0.9 GO:0008725 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.1 0.2 GO:0000702 oxidized base lesion DNA N-glycosylase activity(GO:0000702)
0.1 6.8 GO:0003724 RNA helicase activity(GO:0003724)
0.1 0.7 GO:0001653 peptide receptor activity(GO:0001653)
0.1 1.0 GO:0004430 1-phosphatidylinositol 4-kinase activity(GO:0004430)
0.1 0.3 GO:0004817 cysteine-tRNA ligase activity(GO:0004817)
0.1 0.4 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.1 0.3 GO:0050815 phosphoserine binding(GO:0050815) RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)
0.1 0.3 GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856)
0.1 0.3 GO:0004057 arginyltransferase activity(GO:0004057)
0.1 0.2 GO:0001130 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.1 0.3 GO:0070401 NADP+ binding(GO:0070401)
0.1 0.2 GO:0019784 NEDD8-specific protease activity(GO:0019784)
0.1 0.2 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.1 1.3 GO:0035064 methylated histone binding(GO:0035064)
0.1 0.3 GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity(GO:0046537)
0.1 0.8 GO:0036002 pre-mRNA binding(GO:0036002)
0.1 0.7 GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285)
0.1 0.8 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.1 2.3 GO:0044183 protein binding involved in protein folding(GO:0044183)
0.1 0.5 GO:0050105 L-gulonolactone oxidase activity(GO:0050105)
0.1 0.4 GO:0030943 mitochondrion targeting sequence binding(GO:0030943)
0.1 0.4 GO:0004416 hydroxyacylglutathione hydrolase activity(GO:0004416)
0.1 3.9 GO:0043621 protein self-association(GO:0043621)
0.1 0.3 GO:0016985 mannan endo-1,4-beta-mannosidase activity(GO:0016985)
0.1 1.0 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.1 0.6 GO:0046933 proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.1 2.4 GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity(GO:0015450)
0.1 0.6 GO:0030976 thiamine pyrophosphate binding(GO:0030976)
0.1 1.1 GO:0004675 transmembrane receptor protein serine/threonine kinase activity(GO:0004675)
0.1 0.7 GO:0034647 histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.1 0.7 GO:0070300 phosphatidic acid binding(GO:0070300)
0.1 0.3 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.1 5.2 GO:0051082 unfolded protein binding(GO:0051082)
0.1 0.3 GO:0010277 chlorophyllide a oxygenase [overall] activity(GO:0010277)
0.1 0.2 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.1 1.2 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.1 2.6 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.1 0.4 GO:0043015 gamma-tubulin binding(GO:0043015)
0.1 0.9 GO:0003978 UDP-glucose 4-epimerase activity(GO:0003978)
0.1 0.2 GO:0005344 oxygen transporter activity(GO:0005344)
0.1 0.4 GO:0019137 thioglucosidase activity(GO:0019137)
0.1 0.8 GO:1990939 ATP-dependent microtubule motor activity(GO:1990939)
0.1 0.2 GO:1990380 Lys48-specific deubiquitinase activity(GO:1990380)
0.1 1.4 GO:0008143 poly(A) binding(GO:0008143)
0.1 0.4 GO:0102391 decanoate--CoA ligase activity(GO:0102391)
0.1 0.2 GO:0015399 primary active transmembrane transporter activity(GO:0015399)
0.1 0.2 GO:0004412 homoserine dehydrogenase activity(GO:0004412)
0.1 0.2 GO:0004140 dephospho-CoA kinase activity(GO:0004140)
0.1 0.2 GO:0047874 dolichyldiphosphatase activity(GO:0047874)
0.1 0.5 GO:0004366 glycerol-3-phosphate O-acyltransferase activity(GO:0004366) glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.1 0.2 GO:0052640 salicylic acid glucosyltransferase (glucoside-forming) activity(GO:0052640)
0.1 0.3 GO:0036456 L-methionine:thioredoxin-disulfide S-oxidoreductase activity(GO:0033744) L-methionine-(S)-S-oxide reductase activity(GO:0036456)
0.1 1.3 GO:0045309 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.1 1.8 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.1 1.6 GO:0015562 efflux transmembrane transporter activity(GO:0015562)
0.1 0.3 GO:0016211 ammonia ligase activity(GO:0016211) acid-ammonia (or amide) ligase activity(GO:0016880)
0.1 0.4 GO:0003916 DNA topoisomerase activity(GO:0003916)
0.1 0.4 GO:0046592 polyamine oxidase activity(GO:0046592)
0.1 0.2 GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity(GO:0050567)
0.1 0.2 GO:0010313 phytochrome binding(GO:0010313)
0.1 2.0 GO:0004407 histone deacetylase activity(GO:0004407) protein deacetylase activity(GO:0033558)
0.1 2.6 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.1 2.4 GO:0003713 transcription coactivator activity(GO:0003713)
0.1 0.7 GO:0016157 sucrose synthase activity(GO:0016157)
0.1 0.7 GO:0009044 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.1 0.4 GO:0051185 S-adenosyl-L-methionine transmembrane transporter activity(GO:0000095) coenzyme transporter activity(GO:0051185)
0.1 0.2 GO:0070402 NADPH binding(GO:0070402)
0.1 0.6 GO:0010997 anaphase-promoting complex binding(GO:0010997)
0.0 0.2 GO:0004000 adenosine deaminase activity(GO:0004000) tRNA-specific adenosine deaminase activity(GO:0008251)
0.0 0.5 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.0 0.5 GO:0102360 daphnetin 3-O-glucosyltransferase activity(GO:0102360)
0.0 0.8 GO:0008266 poly-pyrimidine tract binding(GO:0008187) poly(U) RNA binding(GO:0008266)
0.0 0.1 GO:0004750 ribulose-phosphate 3-epimerase activity(GO:0004750)
0.0 2.5 GO:0042393 histone binding(GO:0042393)
0.0 0.7 GO:0051117 ATPase binding(GO:0051117)
0.0 0.2 GO:0022840 leak channel activity(GO:0022840) potassium ion leak channel activity(GO:0022841) narrow pore channel activity(GO:0022842)
0.0 1.1 GO:0003954 NADH dehydrogenase activity(GO:0003954)
0.0 1.9 GO:0003743 translation initiation factor activity(GO:0003743)
0.0 0.1 GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity(GO:0008898) betaine-homocysteine S-methyltransferase activity(GO:0047150)
0.0 0.6 GO:0019199 transmembrane receptor protein kinase activity(GO:0019199)
0.0 2.9 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.4 GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
0.0 0.2 GO:0051011 microtubule minus-end binding(GO:0051011)
0.0 1.5 GO:0035091 phosphatidylinositol binding(GO:0035091)
0.0 0.2 GO:0004729 oxygen-dependent protoporphyrinogen oxidase activity(GO:0004729) protoporphyrinogen oxidase activity(GO:0070818)
0.0 0.1 GO:0030332 cyclin binding(GO:0030332)
0.0 0.8 GO:0008353 RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353)
0.0 0.2 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.0 2.6 GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds(GO:0016799)
0.0 0.1 GO:0008821 crossover junction endodeoxyribonuclease activity(GO:0008821)
0.0 0.6 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.0 0.6 GO:0003725 double-stranded RNA binding(GO:0003725)
0.0 0.1 GO:0016504 peptidase activator activity(GO:0016504)
0.0 0.3 GO:0004550 nucleoside diphosphate kinase activity(GO:0004550)
0.0 0.4 GO:0048040 UDP-glucuronate decarboxylase activity(GO:0048040)
0.0 0.2 GO:0046972 histone acetyltransferase activity (H4-K5 specific)(GO:0043995) histone acetyltransferase activity (H4-K8 specific)(GO:0043996) histone acetyltransferase activity (H4-K16 specific)(GO:0046972)
0.0 0.3 GO:0004017 adenylate kinase activity(GO:0004017)
0.0 0.1 GO:0019156 isoamylase activity(GO:0019156)
0.0 0.5 GO:0000014 single-stranded DNA endodeoxyribonuclease activity(GO:0000014)
0.0 0.2 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.0 1.2 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.0 4.4 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.0 0.5 GO:0008641 small protein activating enzyme activity(GO:0008641)
0.0 0.2 GO:0030151 molybdenum ion binding(GO:0030151)
0.0 0.2 GO:0018488 aryl-aldehyde oxidase activity(GO:0018488) indole-3-acetaldehyde oxidase activity(GO:0050302)
0.0 1.9 GO:0036459 thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459)
0.0 0.6 GO:0043424 protein histidine kinase binding(GO:0043424)
0.0 0.3 GO:0051537 2 iron, 2 sulfur cluster binding(GO:0051537)
0.0 1.1 GO:0016782 transferase activity, transferring sulfur-containing groups(GO:0016782)
0.0 1.0 GO:0005085 guanyl-nucleotide exchange factor activity(GO:0005085)
0.0 0.4 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.0 0.2 GO:0003747 translation release factor activity(GO:0003747) translation termination factor activity(GO:0008079)
0.0 0.4 GO:0005048 signal sequence binding(GO:0005048)
0.0 0.1 GO:0070259 tyrosyl-DNA phosphodiesterase activity(GO:0070259)
0.0 0.2 GO:0016247 channel regulator activity(GO:0016247)
0.0 0.2 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.0 0.5 GO:0043022 ribosome binding(GO:0043022)
0.0 1.7 GO:0004712 protein serine/threonine/tyrosine kinase activity(GO:0004712)
0.0 0.3 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.0 16.9 GO:0044822 mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822)
0.0 0.3 GO:0002161 aminoacyl-tRNA editing activity(GO:0002161)
0.0 0.4 GO:0022884 protein transmembrane transporter activity(GO:0008320) macromolecule transmembrane transporter activity(GO:0022884)
0.0 1.2 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.0 0.4 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 1.3 GO:0000989 transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712)
0.0 0.2 GO:0052623 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.0 0.3 GO:0004435 phosphatidylinositol phospholipase C activity(GO:0004435)
0.0 8.2 GO:0003723 RNA binding(GO:0003723)
0.0 0.5 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.0 0.1 GO:0043539 protein serine/threonine kinase activator activity(GO:0043539)
0.0 0.5 GO:0060090 binding, bridging(GO:0060090)
0.0 0.3 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.0 0.5 GO:0003678 DNA helicase activity(GO:0003678)
0.0 0.1 GO:0043021 ribonucleoprotein complex binding(GO:0043021)
0.0 0.6 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 1.2 GO:0009931 calmodulin-dependent protein kinase activity(GO:0004683) calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857)
0.0 1.6 GO:0019829 cation-transporting ATPase activity(GO:0019829)
0.0 0.2 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.0 0.7 GO:0051540 iron-sulfur cluster binding(GO:0051536) metal cluster binding(GO:0051540)
0.0 0.4 GO:0016844 strictosidine synthase activity(GO:0016844)
0.0 0.3 GO:0043138 3'-5' DNA helicase activity(GO:0043138)
0.0 1.0 GO:0051015 actin filament binding(GO:0051015)
0.0 0.9 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.0 0.1 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.0 0.1 GO:0050664 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.0 0.4 GO:0019207 kinase regulator activity(GO:0019207)
0.0 0.2 GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor(GO:0016634)
0.0 0.2 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.2 GO:0008526 phosphatidylinositol transporter activity(GO:0008526)
0.0 0.1 GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides(GO:0016812)
0.0 0.1 GO:0022829 porin activity(GO:0015288) wide pore channel activity(GO:0022829)
0.0 4.2 GO:0016887 ATPase activity(GO:0016887)
0.0 0.1 GO:0015203 polyamine transmembrane transporter activity(GO:0015203)
0.0 0.1 GO:0004640 phosphoribosylanthranilate isomerase activity(GO:0004640)
0.0 0.1 GO:0016681 ubiquinol-cytochrome-c reductase activity(GO:0008121) oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor(GO:0016681)
0.0 0.1 GO:0004526 ribonuclease P activity(GO:0004526)
0.0 0.4 GO:0003756 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.0 0.1 GO:0015136 sialic acid transmembrane transporter activity(GO:0015136)
0.0 0.0 GO:0004046 aminoacylase activity(GO:0004046)
0.0 0.1 GO:0003968 RNA-directed RNA polymerase activity(GO:0003968)
0.0 0.0 GO:0003986 acetyl-CoA hydrolase activity(GO:0003986)
0.0 0.1 GO:0101005 ubiquitinyl hydrolase activity(GO:0101005)
0.0 0.7 GO:0017137 Rab GTPase binding(GO:0017137)
0.0 1.3 GO:0004601 peroxidase activity(GO:0004601)
0.0 0.9 GO:0003682 chromatin binding(GO:0003682)
0.0 0.2 GO:0005267 potassium channel activity(GO:0005267)
0.0 0.1 GO:0004594 pantothenate kinase activity(GO:0004594)
0.0 5.4 GO:0008270 zinc ion binding(GO:0008270)
0.0 0.2 GO:0016251 obsolete general RNA polymerase II transcription factor activity(GO:0016251)
0.0 0.1 GO:0001046 core promoter sequence-specific DNA binding(GO:0001046) core promoter binding(GO:0001047)
0.0 0.5 GO:0008080 N-acetyltransferase activity(GO:0008080)
0.0 0.1 GO:0045502 dynein binding(GO:0045502) dynein intermediate chain binding(GO:0045505) dynein light intermediate chain binding(GO:0051959)
0.0 0.1 GO:0016776 phosphotransferase activity, phosphate group as acceptor(GO:0016776)
0.0 0.1 GO:0016273 arginine N-methyltransferase activity(GO:0016273) protein-arginine N-methyltransferase activity(GO:0016274)
0.0 0.1 GO:0001671 ATPase activator activity(GO:0001671)
0.0 0.1 GO:0000993 RNA polymerase II core binding(GO:0000993) basal transcription machinery binding(GO:0001098) basal RNA polymerase II transcription machinery binding(GO:0001099)
0.0 0.0 GO:0070137 ubiquitin-like protein-specific endopeptidase activity(GO:0070137) SUMO-specific endopeptidase activity(GO:0070139)
0.0 0.0 GO:0016429 tRNA (adenine-N1-)-methyltransferase activity(GO:0016429)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.5 SIG PIP3 SIGNALING IN CARDIAC MYOCTES Genes related to PIP3 signaling in cardiac myocytes
0.5 0.5 PID RAS PATHWAY Regulation of Ras family activation
0.5 0.5 PID TCPTP PATHWAY Signaling events mediated by TCPTP
0.3 1.1 PID VEGF VEGFR PATHWAY VEGF and VEGFR signaling network
0.3 1.0 ST B CELL ANTIGEN RECEPTOR B Cell Antigen Receptor
0.2 0.8 PID BETA CATENIN NUC PATHWAY Regulation of nuclear beta catenin signaling and target gene transcription
0.2 0.5 PID A6B1 A6B4 INTEGRIN PATHWAY a6b1 and a6b4 Integrin signaling
0.1 0.2 PID TAP63 PATHWAY Validated transcriptional targets of TAp63 isoforms
0.1 0.7 PID HDAC CLASSI PATHWAY Signaling events mediated by HDAC Class I
0.1 0.4 PID IL2 PI3K PATHWAY IL2 signaling events mediated by PI3K
0.1 0.7 PID ATR PATHWAY ATR signaling pathway
0.1 0.2 PID LYMPH ANGIOGENESIS PATHWAY VEGFR3 signaling in lymphatic endothelium
0.1 0.4 PID PLK1 PATHWAY PLK1 signaling events
0.0 0.1 PID DELTA NP63 PATHWAY Validated transcriptional targets of deltaNp63 isoforms
0.0 0.2 PID KIT PATHWAY Signaling events mediated by Stem cell factor receptor (c-Kit)
0.0 0.2 NABA ECM GLYCOPROTEINS Genes encoding structural ECM glycoproteins

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.7 REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES Genes involved in Recruitment of mitotic centrosome proteins and complexes
0.4 1.2 REACTOME GLYCOSPHINGOLIPID METABOLISM Genes involved in Glycosphingolipid metabolism
0.3 0.6 REACTOME G2 M DNA DAMAGE CHECKPOINT Genes involved in G2/M DNA damage checkpoint
0.3 0.8 REACTOME NRAGE SIGNALS DEATH THROUGH JNK Genes involved in NRAGE signals death through JNK
0.3 0.8 REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION Genes involved in Cyclin E associated events during G1/S transition
0.3 1.1 REACTOME VEGF LIGAND RECEPTOR INTERACTIONS Genes involved in VEGF ligand-receptor interactions
0.2 1.1 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.2 1.0 REACTOME HOST INTERACTIONS OF HIV FACTORS Genes involved in Host Interactions of HIV factors
0.2 0.5 REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS Genes involved in Golgi Associated Vesicle Biogenesis
0.2 0.5 REACTOME PI METABOLISM Genes involved in PI Metabolism
0.2 0.6 REACTOME INTEGRIN ALPHAIIB BETA3 SIGNALING Genes involved in Integrin alphaIIb beta3 signaling
0.1 1.0 REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS Genes involved in Association of TriC/CCT with target proteins during biosynthesis
0.1 3.3 REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex
0.1 0.4 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing
0.1 0.4 REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.1 0.8 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.1 0.4 REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX Genes involved in Formation of the ternary complex, and subsequently, the 43S complex
0.1 0.4 REACTOME POL SWITCHING Genes involved in Polymerase switching
0.1 0.5 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism
0.1 0.3 REACTOME PURINE METABOLISM Genes involved in Purine metabolism
0.1 0.4 REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle
0.1 0.5 REACTOME BASE EXCISION REPAIR Genes involved in Base Excision Repair
0.1 1.6 REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS Genes involved in Metabolism of lipids and lipoproteins
0.1 0.6 REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS Genes involved in ABCA transporters in lipid homeostasis
0.0 0.2 REACTOME SIGNALING BY SCF KIT Genes involved in Signaling by SCF-KIT
0.0 0.2 REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
0.0 0.1 REACTOME METABOLISM OF CARBOHYDRATES Genes involved in Metabolism of carbohydrates