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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT2G36010_AT5G02470

Z-value: 1.15

Transcription factors associated with AT2G36010_AT5G02470

Gene Symbol Gene ID Gene Info
AT2G36010
AT2G36010 E2F transcription factor 3
AT5G02470
AT5G02470 Transcription factor DP

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
DPAarTal_v1_Chr5_-_544938_544955-0.515.1e-03Click!
E2F3arTal_v1_Chr2_+_15119516_151195890.365.8e-02Click!

Activity profile of AT2G36010_AT5G02470 motif

Sorted Z-values of AT2G36010_AT5G02470 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_-_17288953 4.70 AT3G46940.1
AT3G46940.2
DUT1
DUTP-PYROPHOSPHATASE-LIKE 1
Chr1_+_2263037 4.56 AT1G07370.1
PCNA1
proliferating cellular nuclear antigen 1
Chr1_+_16970214 4.29 AT1G44900.2
AT1G44900.1
MCM2
minichromosome maintenance (MCM2/3/5) family protein
Chr2_+_9293261 3.87 AT2G21790.1
RNR1
ribonucleotide reductase 1
Chr3_-_9981620 3.57 AT3G27060.1
TSO2
Ferritin/ribonucleotide reductase-like family protein
Chr5_+_19932114 3.52 AT5G49160.1
AT5G49160.2
MET1
methyltransferase 1
Chr5_+_26776953 3.24 AT5G67100.2
AT5G67100.1
ICU2
DNA-directed DNA polymerase
Chr2_+_16934621 3.09 AT2G40550.1
ETG1
E2F target protein 1 (ETG1)
Chr2_-_7130729 2.92 AT2G16440.1
MCM4
Minichromosome maintenance (MCM2/3/5) family protein
Chr1_-_26253687 2.84 AT1G69770.1
CMT3
chromomethylase 3
Chr4_-_7462447 2.64 AT4G12620.1
ORC1B
origin of replication complex 1B
Chr1_-_25348406 2.36 AT1G67630.1
POLA2
DNA polymerase alpha 2
Chr1_-_24324064 2.33 AT1G65470.2
AT1G65470.1
FAS1
chromatin assembly factor-1 (FASCIATA1) (FAS1)
Chr2_+_13328862 2.24 AT2G31270.1
CDT1A
CDT1-like protein A
Chr3_+_3880908 2.18 AT3G12170.2
AT3G12170.1
AT3G12170
Chaperone DnaJ-domain superfamily protein
Chr3_+_14751280 2.14 AT3G42660.1
AT3G42660
transducin family protein / WD-40 repeat family protein
Chr2_+_19039024 2.05 AT2G46380.2
AT2G46380.1
AT2G46380
extra-large G-like protein, putative (DUF3133)
Chr2_+_12689171 2.02 AT2G29680.2
CDC6
cell division control 6
Chr3_-_126876 1.93 AT3G01330.1
DEL3
DP-E2F-like protein 3
Chr5_+_16760846 1.89 AT5G41880.1
POLA3
DNA primase POLA3
Chr3_+_9143916 1.88 AT3G25100.1
CDC45
cell division cycle 45
Chr5_-_21463249 1.87 AT5G52910.1
AT5G52910.2
ATIM
timeless family protein
Chr2_+_12689581 1.86 AT2G29680.1
CDC6
cell division control 6
Chr3_+_21997052 1.80 AT3G59550.1
SYN3
Rad21/Rec8-like family protein
Chr1_+_13089816 1.74 AT1G35530.3
AT1G35530.5
AT1G35530.2
AT1G35530.1
AT1G35530.4
FANCM
DEAD/DEAH box RNA helicase family protein
Chr3_+_20059671 1.70 AT3G54180.1
CDKB1%3B1
cyclin-dependent kinase B1;1
Chr1_-_1331163 1.69 AT1G04730.2
AT1G04730.1
AT1G04730.4
CTF18
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_+_1698079 1.56 AT3G05740.1
RECQI1
RECQ helicase l1
Chr1_-_25208972 1.53 AT1G67320.1
AT1G67320.3
AT1G67320.2
EMB2813
DNA primase, large subunit family
Chr5_+_25574419 1.48 AT5G63920.1
TOP3A
topoisomerase 3alpha
Chr5_-_7890180 1.46 AT5G23420.2
HMGB6
high-mobility group box 6
Chr3_+_10232242 1.43 AT3G27640.1
AT3G27640.2
AT3G27640
Transducin/WD40 repeat-like superfamily protein
Chr3_+_1698297 1.43 AT3G05740.2
RECQI1
RECQ helicase l1
Chr3_+_5008676 1.42 AT3G14890.1
AT3G14890.2
AT3G14890
phosphoesterase
Chr1_-_2232897 1.41 AT1G07270.2
AT1G07270.1
AT1G07270
Cell division control, Cdc6
Chr3_+_611490 1.40 AT3G02820.2
AT3G02820.1
AT3G02820
zinc knuckle (CCHC-type) family protein
Chr4_-_8484330 1.33 AT4G14770.3
TCX2
TESMIN/TSO1-like CXC 2
Chr2_-_10400802 1.33 AT2G24490.1
RPA2
replicon protein A2
Chr5_-_7890355 1.32 AT5G23420.1
HMGB6
high-mobility group box 6
Chr4_-_8484976 1.29 AT4G14770.1
TCX2
TESMIN/TSO1-like CXC 2
Chr4_-_8484582 1.29 AT4G14770.2
TCX2
TESMIN/TSO1-like CXC 2
Chr5_+_25056025 1.25 AT5G62410.1
SMC2
structural maintenance of chromosomes 2
Chr2_-_10400498 1.20 AT2G24490.2
RPA2
replicon protein A2
Chr1_-_2547946 1.19 AT1G08130.1
LIG1
DNA ligase 1
Chr3_-_6413196 1.16 AT3G18630.1
UNG
uracil dna glycosylase
Chr2_-_19551171 1.16 AT2G47680.1
AT2G47680
zinc finger (CCCH type) helicase family protein
Chr5_-_7571109 1.11 AT5G22750.1
RAD5
DNA/RNA helicase protein
Chr5_+_2422783 1.11 AT5G07660.1
SMC6A
structural maintenance of chromosomes 6A
Chr1_+_9298670 1.09 AT1G26840.1
ORC6
origin recognition complex protein 6
Chr4_-_13048262 1.04 AT4G25540.1
MSH3
homolog of DNA mismatch repair protein MSH3
Chr1_+_29582907 1.00 AT1G78650.1
POLD3
DNA-directed DNA polymerase
Chr4_+_9871761 0.98 AT4G17760.2
AT4G17760.1
AT4G17760
PCNA domain-containing protein
Chr5_+_5474366 0.94 AT5G16690.2
AT5G16690.1
ORC3
origin recognition complex subunit 3
Chr5_+_15208358 0.93 AT5G38110.1
ASF1B
anti- silencing function 1b
Chr1_-_7192794 0.91 AT1G20720.1
AT1G20720.2
AT1G20720
RAD3-like DNA-binding helicase protein
Chr5_-_6202166 0.88 AT5G18620.2
AT5G18620.1
CHR17
chromatin remodeling factor17
Chr5_+_17114329 0.85 AT5G42680.1
AT5G42680
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr5_+_17114098 0.82 AT5G42680.2
AT5G42680
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr5_-_967432 0.80 AT5G03700.1
AT5G03700
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein
Chr3_+_22421344 0.80 AT3G60660.1
AT3G60660
spindle/kinetochore-associated-like protein
Chr1_-_1330402 0.76 AT1G04730.3
CTF18
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr2_-_12651753 0.75 AT2G29570.1
PCNA2
proliferating cell nuclear antigen 2
Chr3_-_23444006 0.72 AT3G63480.1
AT3G63480.2
AT3G63480
ATP binding microtubule motor family protein
Chr4_-_15019771 0.71 AT4G30840.1
AT4G30840
Transducin/WD40 repeat-like superfamily protein
Chr1_+_25562118 0.62 AT1G68200.6
AT1G68200
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr3_-_8828316 0.60 AT3G24320.2
MSH1
MUTL protein homolog 1
Chr3_-_8180122 0.58 AT3G23020.1
AT3G23020
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_30048739 0.56 AT1G79890.3
AT1G79890
RAD3-like DNA-binding helicase protein
Chr5_-_8297159 0.55 AT5G24330.1
ATXR6
TRITHORAX-RELATED PROTEIN 6
Chr3_-_8829728 0.55 AT3G24320.1
MSH1
MUTL protein homolog 1
Chr2_-_10621307 0.54 AT2G24970.1
AT2G24970
spindle/kinetochore-associated protein
Chr1_+_30049612 0.44 AT1G79890.4
AT1G79890
RAD3-like DNA-binding helicase protein
Chr1_-_7209013 0.39 AT1G20750.1
AT1G20750
RAD3-like DNA-binding helicase protein
Chr1_+_30048519 0.38 AT1G79890.1
AT1G79890.2
AT1G79890
RAD3-like DNA-binding helicase protein
Chr2_-_13462431 0.35 AT2G31650.1
ATX1
homologue of trithorax
Chr3_-_3346360 0.32 AT3G10690.1
GYRA
DNA GYRASE A
Chr3_-_5296636 0.23 AT3G15620.2
UVR3
DNA photolyase family protein
Chr3_-_5296811 0.22 AT3G15620.1
UVR3
DNA photolyase family protein
Chr1_+_25561638 0.18 AT1G68200.1
AT1G68200.3
AT1G68200.2
AT1G68200.4
AT1G68200.5
AT1G68200
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr1_+_30336097 0.15 AT1G80720.2
AT1G80720.1
AT1G80720
Mitochondrial glycoprotein family protein
Chr5_+_19866231 0.13 AT5G49010.1
AT5G49010.2
SLD5
DNA replication protein-like protein
Chr4_+_15237191 0.12 AT4G31400.1
AT4G31400.2
CTF7
protein CTF7
Chr5_+_2016566 0.04 AT5G06590.2
AT5G06590.1
AT5G06590
hypothetical protein
Chr4_-_1080722 0.03 AT4G02460.3
AT4G02460.4
AT4G02460.2
AT4G02460.1
PMS1
DNA mismatch repair protein
Chr5_+_25599514 0.02 AT5G63960.2
AT5G63960.1
AT5G63960
DNA polymerase delta subunit 1

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G36010_AT5G02470

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
2.6 10.4 GO:1902975 cell cycle DNA replication initiation(GO:1902292) nuclear cell cycle DNA replication initiation(GO:1902315) mitotic DNA replication initiation(GO:1902975)
2.1 6.4 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
2.0 12.1 GO:0009263 deoxyribonucleotide biosynthetic process(GO:0009263)
1.4 4.1 GO:0071163 DNA replication preinitiation complex assembly(GO:0071163)
1.1 5.3 GO:0006272 leading strand elongation(GO:0006272)
0.8 3.9 GO:0000085 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.8 4.7 GO:0045005 DNA-dependent DNA replication maintenance of fidelity(GO:0045005)
0.6 5.0 GO:0033314 mitotic DNA replication checkpoint(GO:0033314)
0.5 2.3 GO:0031507 heterochromatin assembly(GO:0031507)
0.3 1.0 GO:0006297 nucleotide-excision repair, DNA gap filling(GO:0006297)
0.3 1.2 GO:0000012 single strand break repair(GO:0000012)
0.2 3.0 GO:0006268 DNA unwinding involved in DNA replication(GO:0006268)
0.2 0.9 GO:0036388 pre-replicative complex assembly involved in nuclear cell cycle DNA replication(GO:0006267) pre-replicative complex assembly(GO:0036388) pre-replicative complex assembly involved in cell cycle DNA replication(GO:1902299)
0.2 1.1 GO:0045003 double-strand break repair via synthesis-dependent strand annealing(GO:0045003)
0.2 7.6 GO:0007062 sister chromatid cohesion(GO:0007062)
0.2 1.2 GO:0006285 base-excision repair, AP site formation(GO:0006285)
0.1 0.9 GO:1900036 positive regulation of cellular response to heat(GO:1900036)
0.1 1.8 GO:0006265 DNA topological change(GO:0006265)
0.1 1.7 GO:0010274 hydrotropism(GO:0010274)
0.1 0.3 GO:0080182 histone H3-K4 trimethylation(GO:0080182)
0.1 1.2 GO:0032042 mitochondrial DNA metabolic process(GO:0032042)
0.1 1.0 GO:0000077 DNA damage checkpoint(GO:0000077)
0.1 2.8 GO:0000741 karyogamy(GO:0000741) polar nucleus fusion(GO:0010197)
0.1 2.1 GO:1900150 regulation of defense response to fungus(GO:1900150)
0.1 0.5 GO:0043153 entrainment of circadian clock by photoperiod(GO:0043153)
0.1 1.9 GO:0000122 negative regulation of transcription from RNA polymerase II promoter(GO:0000122)
0.1 0.5 GO:0006270 DNA replication initiation(GO:0006270)
0.0 4.6 GO:0006260 DNA replication(GO:0006260)
0.0 0.9 GO:0009294 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.0 0.8 GO:0048544 recognition of pollen(GO:0048544)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
2.5 7.5 GO:0005658 alpha DNA polymerase:primase complex(GO:0005658)
0.9 2.8 GO:0036387 nuclear pre-replicative complex(GO:0005656) pre-replicative complex(GO:0036387)
0.9 8.8 GO:0042555 MCM complex(GO:0042555)
0.6 3.7 GO:0000808 origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664)
0.3 2.0 GO:0031298 replication fork protection complex(GO:0031298)
0.3 1.0 GO:0030896 checkpoint clamp complex(GO:0030896)
0.3 2.5 GO:0005662 DNA replication factor A complex(GO:0005662)
0.3 1.8 GO:0030892 nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) meiotic cohesin complex(GO:0030893) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991)
0.2 0.9 GO:0043625 delta DNA polymerase complex(GO:0043625)
0.2 1.3 GO:0000796 condensin complex(GO:0000796)
0.2 1.8 GO:0032300 mismatch repair complex(GO:0032300)
0.1 0.6 GO:0030915 Smc5-Smc6 complex(GO:0030915)
0.1 0.3 GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)
0.1 0.5 GO:0000777 condensed chromosome kinetochore(GO:0000777)
0.0 0.8 GO:0005657 replication fork(GO:0005657)
0.0 3.9 GO:1990204 oxidoreductase complex(GO:1990204)
0.0 1.9 GO:0090575 RNA polymerase II transcription factor complex(GO:0090575)
0.0 0.3 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.0 5.0 GO:0005730 nucleolus(GO:0005730)
0.0 1.4 GO:0080008 Cul4-RING E3 ubiquitin ligase complex(GO:0080008)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
2.5 7.4 GO:0061731 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
0.9 18.3 GO:0003688 DNA replication origin binding(GO:0003688)
0.6 6.4 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.6 2.2 GO:0070182 DNA polymerase binding(GO:0070182)
0.5 4.7 GO:0009378 four-way junction helicase activity(GO:0009378)
0.4 4.7 GO:0047429 nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.2 1.5 GO:0003917 DNA topoisomerase type I activity(GO:0003917)
0.2 1.2 GO:0003909 DNA ligase activity(GO:0003909) DNA ligase (ATP) activity(GO:0003910)
0.2 0.6 GO:0046976 histone methyltransferase activity (H3-K27 specific)(GO:0046976)
0.2 0.7 GO:0032135 DNA insertion or deletion binding(GO:0032135)
0.1 1.2 GO:0030983 mismatched DNA binding(GO:0030983)
0.1 4.0 GO:0003678 DNA helicase activity(GO:0003678)
0.1 0.5 GO:0003913 DNA photolyase activity(GO:0003913)
0.1 1.2 GO:0019104 DNA N-glycosylase activity(GO:0019104)
0.0 0.9 GO:0031491 nucleosome binding(GO:0031491)
0.0 2.5 GO:0003697 single-stranded DNA binding(GO:0003697)
0.0 1.9 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.0 2.5 GO:0042393 histone binding(GO:0042393)
0.0 0.3 GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.0 1.8 GO:0003682 chromatin binding(GO:0003682)
0.0 5.3 GO:0030234 enzyme regulator activity(GO:0030234)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
1.1 10.7 PID ATR PATHWAY ATR signaling pathway
0.5 3.2 PID FANCONI PATHWAY Fanconi anemia pathway
0.4 2.9 PID CMYB PATHWAY C-MYB transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
1.3 9.0 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
1.0 3.9 REACTOME G1 S SPECIFIC TRANSCRIPTION Genes involved in G1/S-Specific Transcription
0.9 7.0 REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND Genes involved in Processive synthesis on the lagging strand
0.4 1.7 REACTOME FANCONI ANEMIA PATHWAY Genes involved in Fanconi Anemia pathway
0.4 2.0 REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION Genes involved in E2F-enabled inhibition of pre-replication complex formation
0.4 1.8 REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Dopamine Neurotransmitter Release Cycle
0.1 1.5 REACTOME MEIOTIC RECOMBINATION Genes involved in Meiotic Recombination