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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G08500
Z-value: 0.33
Transcription factors associated with AT3G08500
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G08500
|
AT3G08500 | myb domain protein 83 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB83 | arTal_v1_Chr3_-_2578276_2578276 | 0.64 | 2.8e-04 | Click! |
Activity profile of AT3G08500 motif
Sorted Z-values of AT3G08500 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| Chr5_+_21582614 | 1.12 |
AT5G53200.1
|
TRY
|
Homeodomain-like superfamily protein |
| Chr4_-_10316886 | 0.79 |
AT4G18780.1
|
IRX1
|
cellulose synthase family protein |
| Chr1_-_24171502 | 0.66 |
AT1G65060.2
AT1G65060.1 |
4CL3
|
4-coumarate:CoA ligase 3 |
| Chr5_-_19838235 | 0.65 |
AT5G48930.1
|
HCT
|
hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase |
| Chr2_-_15560755 | 0.60 |
AT2G37040.1
|
PAL1
|
PHE ammonia lyase 1 |
| Chr4_+_18053360 | 0.57 |
AT4G38620.1
|
MYB4
|
myb domain protein 4 |
| Chr3_+_6744377 | 0.53 |
AT3G19450.1
|
ATCAD4
|
GroES-like zinc-binding alcohol dehydrogenase family protein |
| Chr4_-_16533001 | 0.49 |
AT4G34610.2
AT4G34610.4 |
BLH6
|
BEL1-like homeodomain 6 |
| Chr4_-_16533362 | 0.48 |
AT4G34610.1
AT4G34610.3 |
BLH6
|
BEL1-like homeodomain 6 |
| Chr1_-_24929054 | 0.41 |
AT1G66810.3
AT1G66810.2 |
AT1G66810
|
Zinc finger C-x8-C-x5-C-x3-H type family protein |
| Chr3_+_3203988 | 0.37 |
AT3G10340.1
|
PAL4
|
phenylalanine ammonia-lyase 4 |
| Chr1_-_5630476 | 0.35 |
AT1G16490.2
|
MYB58
|
myb domain protein 58 |
| Chr1_-_24928803 | 0.35 |
AT1G66810.1
|
AT1G66810
|
Zinc finger C-x8-C-x5-C-x3-H type family protein |
| Chr1_-_19161552 | 0.33 |
AT1G51680.3
AT1G51680.2 |
4CL1
|
4-coumarate:CoA ligase 1 |
| Chr1_-_19161737 | 0.32 |
AT1G51680.1
|
4CL1
|
4-coumarate:CoA ligase 1 |
| Chr4_+_16310409 | 0.31 |
AT4G34050.3
|
CCoAOMT1
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| Chr4_+_16310768 | 0.30 |
AT4G34050.1
AT4G34050.2 |
CCoAOMT1
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| Chr5_-_23917873 | 0.30 |
AT5G59290.3
AT5G59290.2 |
UXS3
|
UDP-glucuronic acid decarboxylase 3 |
| Chr5_-_23918266 | 0.26 |
AT5G59290.1
AT5G59290.4 |
UXS3
|
UDP-glucuronic acid decarboxylase 3 |
| Chr1_+_23337167 | 0.24 |
AT1G62990.1
|
KNAT7
|
homeobox knotted-like protein |
| Chr1_-_5631088 | 0.19 |
AT1G16490.1
|
MYB58
|
myb domain protein 58 |
| Chr1_+_29786495 | 0.12 |
AT1G79180.2
|
MYB63
|
myb domain protein 63 |
| Chr1_+_6966842 | 0.11 |
AT1G20090.1
|
ROP2
|
RHO-related protein from plants 2 |
| Chr1_+_29786257 | 0.08 |
AT1G79180.1
|
MYB63
|
myb domain protein 63 |
| Chr4_+_17368915 | 0.07 |
AT4G36870.2
|
BLH2
|
BEL1-like homeodomain 2 |
| Chr5_+_26822432 | 0.05 |
AT5G67230.1
|
IRX14-L
|
Nucleotide-diphospho-sugar transferases superfamily protein |
| Chr4_+_5992908 | 0.03 |
AT4G09460.1
|
MYB6
|
myb domain protein 6 |
| Chr1_+_27601593 | 0.03 |
AT1G73410.1
AT1G73410.2 |
MYB54
|
myb domain protein 54 |
| Chr3_+_19042858 | 0.03 |
AT3G51300.1
|
ROP1
|
RHO-related protein from plants 1 |
| Chr4_+_17369179 | 0.03 |
AT4G36870.3
AT4G36870.1 AT4G36870.4 |
BLH2
|
BEL1-like homeodomain 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G08500
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.6 | GO:0009805 | coumarin biosynthetic process(GO:0009805) |
| 0.2 | 0.8 | GO:0010116 | positive regulation of abscisic acid biosynthetic process(GO:0010116) |
| 0.2 | 1.0 | GO:0009800 | cinnamic acid biosynthetic process(GO:0009800) |
| 0.1 | 0.6 | GO:0033320 | UDP-D-xylose metabolic process(GO:0033319) UDP-D-xylose biosynthetic process(GO:0033320) |
| 0.0 | 0.6 | GO:0009963 | positive regulation of flavonoid biosynthetic process(GO:0009963) |
| 0.0 | 0.9 | GO:2000652 | regulation of secondary cell wall biogenesis(GO:2000652) |
| 0.0 | 1.1 | GO:0010091 | trichome branching(GO:0010091) |
| 0.0 | 0.6 | GO:2000762 | regulation of phenylpropanoid metabolic process(GO:2000762) |
| 0.0 | 0.7 | GO:0010584 | pollen exine formation(GO:0010584) |
| 0.0 | 0.5 | GO:0009809 | lignin biosynthetic process(GO:0009809) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.0 | GO:0045548 | phenylalanine ammonia-lyase activity(GO:0045548) |
| 0.2 | 0.6 | GO:0050734 | hydroxycinnamoyltransferase activity(GO:0050734) |
| 0.2 | 0.6 | GO:0042409 | caffeoyl-CoA O-methyltransferase activity(GO:0042409) |
| 0.1 | 1.3 | GO:0016207 | 4-coumarate-CoA ligase activity(GO:0016207) |
| 0.1 | 0.6 | GO:0048040 | UDP-glucuronate decarboxylase activity(GO:0048040) |
| 0.0 | 0.5 | GO:0052747 | sinapyl alcohol dehydrogenase activity(GO:0052747) |
| 0.0 | 0.8 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.0 | 0.0 | GO:0015018 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018) |