Project

GSE58827: Dynamics of the Mouse Liver

Navigation
Downloads

Results for AGCAGCG

Z-value: 0.31

Motif logo

miRNA associated with seed AGCAGCG

NamemiRBASE accession
MIMAT0003188

Activity profile of AGCAGCG motif

Sorted Z-values of AGCAGCG motif

Promoter Log-likelihood Transcript Gene Gene Info
chr6_+_114131229 1.13 ENSMUST00000032451.7
solute carrier family 6 (neurotransmitter transporter, GABA), member 11
chr7_-_38107490 0.97 ENSMUST00000108023.3
cyclin E1
chr2_-_165473187 0.84 ENSMUST00000029208.8
ENSMUST00000109279.2
solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
chr6_-_91411341 0.51 ENSMUST00000032180.6
wingless-related MMTV integration site 7A
chr9_-_61946768 0.46 ENSMUST00000034815.7
kinesin family member 23
chr9_-_36726374 0.45 ENSMUST00000172702.2
ENSMUST00000172742.1
ENSMUST00000034625.5
checkpoint kinase 1
chr11_-_87108656 0.37 ENSMUST00000051395.8
proline rich 11
chr1_-_98095596 0.37 ENSMUST00000058762.8
ENSMUST00000097625.3
peptidylglycine alpha-amidating monooxygenase
chr19_+_4711153 0.33 ENSMUST00000008991.6
spectrin beta, non-erythrocytic 2
chr1_-_152090308 0.33 ENSMUST00000044581.7
RIKEN cDNA 1700025G04 gene
chr7_+_67952817 0.32 ENSMUST00000005671.8
insulin-like growth factor I receptor
chrX_-_48034842 0.31 ENSMUST00000039026.7
apelin
chr7_+_110122299 0.30 ENSMUST00000033326.8
WEE 1 homolog 1 (S. pombe)
chr17_-_46629420 0.30 ENSMUST00000044442.8
PTK7 protein tyrosine kinase 7
chr17_-_31855782 0.30 ENSMUST00000024839.4
salt inducible kinase 1
chr5_-_99252839 0.30 ENSMUST00000168092.1
ENSMUST00000031276.8
RasGEF domain family, member 1B
chr2_+_179442427 0.29 ENSMUST00000000314.6
cadherin 4
chr10_+_13090788 0.29 ENSMUST00000121646.1
ENSMUST00000121325.1
ENSMUST00000121766.1
pleiomorphic adenoma gene-like 1
chr5_+_47984793 0.25 ENSMUST00000170109.2
ENSMUST00000174421.1
ENSMUST00000173702.1
ENSMUST00000173107.1
slit homolog 2 (Drosophila)
chr1_-_21961581 0.23 ENSMUST00000029667.6
ENSMUST00000173058.1
ENSMUST00000173404.1
potassium voltage-gated channel, subfamily Q, member 5
chr4_+_139574697 0.23 ENSMUST00000174078.1
intermediate filament family orphan 2
chr4_+_114406717 0.23 ENSMUST00000094894.3
TraB domain containing 2B
chr5_-_89883321 0.21 ENSMUST00000163159.1
ENSMUST00000061427.5
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3
chr8_+_88521344 0.21 ENSMUST00000034086.5
naked cuticle 1 homolog (Drosophila)
chr7_+_18925863 0.21 ENSMUST00000172835.1
ENSMUST00000032571.8
neuro-oncological ventral antigen 2
chr4_-_155222535 0.21 ENSMUST00000084103.3
ENSMUST00000030917.5
ski sarcoma viral oncogene homolog (avian)
chr14_-_31577318 0.21 ENSMUST00000112027.2
collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
chr2_+_68117713 0.20 ENSMUST00000112346.2
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
chr10_-_29535857 0.20 ENSMUST00000092623.3
R-spondin 3 homolog (Xenopus laevis)
chr8_-_77724426 0.20 ENSMUST00000034029.7
endothelin receptor type A
chr14_+_75016027 0.19 ENSMUST00000036072.7
RIKEN cDNA 5031414D18 gene
chr15_+_103240405 0.19 ENSMUST00000036004.9
ENSMUST00000087351.7
heterogeneous nuclear ribonucleoprotein A1
chr5_+_88886809 0.19 ENSMUST00000148750.1
solute carrier family 4 (anion exchanger), member 4
chr8_+_83900096 0.19 ENSMUST00000141158.1
latrophilin 1
chr11_-_119086221 0.17 ENSMUST00000026665.7
chromobox 4
chr5_+_113490447 0.15 ENSMUST00000094452.3
WSC domain containing 2
chr12_-_112829351 0.15 ENSMUST00000062092.5
cell division cycle associated 4
chr4_+_137277489 0.15 ENSMUST00000045747.4
wingless-related MMTV integration site 4
chr4_+_43875524 0.15 ENSMUST00000030198.6
reversion-inducing-cysteine-rich protein with kazal motifs
chr13_+_47122719 0.15 ENSMUST00000068891.4
ring finger protein 144B
chr14_+_55854115 0.14 ENSMUST00000168479.1
NYN domain and retroviral integrase containing
chr1_-_37541003 0.14 ENSMUST00000151952.1
mannoside acetylglucosaminyltransferase 4, isoenzyme A
chr1_-_135585314 0.14 ENSMUST00000040599.8
ENSMUST00000067414.6
neuron navigator 1
chr10_-_127060163 0.14 ENSMUST00000040307.5
membrane-associated ring finger (C3HC4) 9
chr5_-_93045022 0.14 ENSMUST00000061328.5
sosondowah ankyrin repeat domain family member B
chr9_-_53975246 0.14 ENSMUST00000048409.7
ELMO/CED-12 domain containing 1
chr4_+_65124174 0.13 ENSMUST00000084501.3
pregnancy-associated plasma protein A
chr19_+_45363734 0.13 ENSMUST00000065601.5
ENSMUST00000111936.2
beta-transducin repeat containing protein
chr3_+_98382438 0.11 ENSMUST00000056096.8
zinc finger protein 697
chr8_-_86885222 0.11 ENSMUST00000034074.7
NEDD4 binding protein 1
chr9_-_108190352 0.11 ENSMUST00000035208.7
bassoon
chr8_-_120589304 0.11 ENSMUST00000034278.5
GINS complex subunit 2 (Psf2 homolog)
chr9_-_58159201 0.11 ENSMUST00000041477.7
immunoglobulin superfamily containing leucine-rich repeat
chr1_-_106714217 0.11 ENSMUST00000112751.1
B cell leukemia/lymphoma 2
chr4_-_141790891 0.11 ENSMUST00000038014.4
ENSMUST00000153880.1
DnaJ (Hsp40) homolog, subfamily C, member 16
chr15_-_9529868 0.10 ENSMUST00000003981.4
interleukin 7 receptor
chr4_+_115839192 0.10 ENSMUST00000019677.5
ENSMUST00000144427.1
ENSMUST00000106513.3
ENSMUST00000130819.1
ENSMUST00000151203.1
ENSMUST00000140315.1
MAP kinase-interacting serine/threonine kinase 1
chr1_+_86045863 0.10 ENSMUST00000165824.1
RIKEN cDNA 2810459M11 gene
chr7_-_118491912 0.09 ENSMUST00000178344.1
inositol 1,4,5-triphosphate receptor interacting protein-like 2
chr14_-_65098031 0.09 ENSMUST00000022550.7
exostoses (multiple)-like 3
chr6_-_127151044 0.09 ENSMUST00000000188.8
cyclin D2
chr13_-_101768154 0.09 ENSMUST00000055518.6
phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
chr19_+_10688744 0.09 ENSMUST00000087951.5
vacuolar protein sorting 37C (yeast)
chr10_+_128411616 0.08 ENSMUST00000096386.5
ENSMUST00000171342.1
ring finger protein 41
chr5_-_5514730 0.08 ENSMUST00000115445.1
ENSMUST00000179804.1
ENSMUST00000125110.1
ENSMUST00000115446.1
claudin 12
chr15_+_84923383 0.08 ENSMUST00000165443.2
nucleoporin 50
chr11_-_63922257 0.08 ENSMUST00000094103.3
heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
chr6_+_47877204 0.08 ENSMUST00000061890.7
zinc finger protein 282
chr8_+_22476700 0.07 ENSMUST00000067786.7
solute carrier family 20, member 2
chr17_+_47505117 0.07 ENSMUST00000183044.1
ENSMUST00000037333.10
cyclin D3
chr13_+_44731265 0.07 ENSMUST00000173246.1
jumonji, AT rich interactive domain 2
chr2_-_160872552 0.07 ENSMUST00000103111.2
zinc fingers and homeoboxes 3
chr8_-_122699066 0.07 ENSMUST00000127984.1
core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
chr9_+_43744399 0.06 ENSMUST00000034510.7
poliovirus receptor-related 1
chr1_+_60746358 0.06 ENSMUST00000027165.2
CD28 antigen
chr12_-_108003594 0.05 ENSMUST00000066060.4
B cell leukemia/lymphoma 11B
chr8_+_105900421 0.05 ENSMUST00000049699.8
protein serine kinase H1
chr4_+_101419277 0.05 ENSMUST00000102780.1
ENSMUST00000106946.1
ENSMUST00000106945.1
adenylate kinase 4
chr7_-_97738222 0.04 ENSMUST00000084986.6
aquaporin 11
chr13_-_103764502 0.04 ENSMUST00000074616.5
splicing regulatory glutamine/lysine-rich protein 1
chr2_-_30124454 0.04 ENSMUST00000044751.8
zyg-11 related, cell cycle regulator
chr15_-_103239812 0.04 ENSMUST00000118152.1
chromobox 5
chr3_+_58415689 0.03 ENSMUST00000099090.2
TSC22 domain family, member 2
chr1_-_75479271 0.03 ENSMUST00000079205.7
ENSMUST00000094818.2
chondroitin polymerizing factor
chr4_-_136835843 0.03 ENSMUST00000105846.2
ENSMUST00000059287.7
ENSMUST00000105845.2
Eph receptor B2
chr11_+_106036867 0.03 ENSMUST00000058438.8
DDB1 and CUL4 associated factor 7
chr5_-_144965793 0.03 ENSMUST00000110677.1
ENSMUST00000085684.4
ENSMUST00000100461.2
SMAD specific E3 ubiquitin protein ligase 1
chr19_-_19001099 0.03 ENSMUST00000040153.8
ENSMUST00000112828.1
RAR-related orphan receptor beta
chr10_+_127739516 0.02 ENSMUST00000054287.7
zinc finger and BTB domain containing 39
chrX_+_36328353 0.02 ENSMUST00000016383.3
LON peptidase N-terminal domain and ring finger 3
chr7_+_101108768 0.02 ENSMUST00000098250.3
ENSMUST00000032931.7
FCH and double SH3 domains 2
chr2_-_39065438 0.02 ENSMUST00000112850.2
golgi autoantigen, golgin subfamily a, 1
chr16_-_46010212 0.02 ENSMUST00000130481.1
phosphatidylinositol-specific phospholipase C, X domain containing 2
chr1_+_64690443 0.01 ENSMUST00000114077.1
cyclin Y-like 1
chr5_-_146795002 0.01 ENSMUST00000085614.5
ubiquitin specific peptidase 12
chr11_+_107547925 0.01 ENSMUST00000100305.1
ENSMUST00000075012.1
ENSMUST00000106746.1
helicase with zinc finger domain
chr15_+_25984359 0.01 ENSMUST00000061875.6
zinc finger protein 622
chr7_+_122067164 0.01 ENSMUST00000033158.4
ubiquitin family domain containing 1
chr8_+_106935720 0.01 ENSMUST00000047425.3
syntrophin, basic 2
chr19_-_60581013 0.01 ENSMUST00000111460.3
ENSMUST00000081790.7
ENSMUST00000166712.1
CDK2 associated, cullin domain 1
chr13_+_49421229 0.01 ENSMUST00000021817.8
inositol 1,3,4,5,6-pentakisphosphate 2-kinase
chr19_+_8953826 0.00 ENSMUST00000096239.5
terminal uridylyl transferase 1, U6 snRNA-specific
chr11_-_70669283 0.00 ENSMUST00000129434.1
ENSMUST00000018431.6
sperm associated antigen 7

Network of associatons between targets according to the STRING database.

First level regulatory network of AGCAGCG

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.


View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 GO:0015744 succinate transport(GO:0015744)
0.2 0.5 GO:0044837 assembly of actomyosin apparatus involved in cytokinesis(GO:0000912) actomyosin contractile ring assembly(GO:0000915) actomyosin contractile ring organization(GO:0044837)
0.1 0.3 GO:0043396 corticotropin-releasing hormone secretion(GO:0043396) regulation of corticotropin-releasing hormone secretion(GO:0043397) positive regulation of corticotropin-releasing hormone secretion(GO:0051466) regulation of G-protein coupled receptor internalization(GO:1904020)
0.1 0.5 GO:0060066 oviduct development(GO:0060066)
0.1 0.3 GO:0050924 corticospinal neuron axon guidance through spinal cord(GO:0021972) positive regulation of negative chemotaxis(GO:0050924) induction of negative chemotaxis(GO:0050929) negative regulation of mononuclear cell migration(GO:0071676) negative regulation of retinal ganglion cell axon guidance(GO:0090260)
0.1 0.3 GO:1903944 regulation of hepatocyte apoptotic process(GO:1903943) negative regulation of hepatocyte apoptotic process(GO:1903944)
0.1 0.2 GO:0072034 tertiary branching involved in mammary gland duct morphogenesis(GO:0060748) renal vesicle induction(GO:0072034) negative regulation of male gonad development(GO:2000019)
0.1 0.5 GO:0006975 DNA damage induced protein phosphorylation(GO:0006975)
0.0 0.3 GO:0032792 negative regulation of CREB transcription factor activity(GO:0032792)
0.0 0.4 GO:0031179 peptide modification(GO:0031179)
0.0 0.1 GO:0099526 presynaptic signal transduction(GO:0098928) presynapse to nucleus signaling pathway(GO:0099526)
0.0 0.2 GO:1900748 positive regulation of vascular endothelial growth factor signaling pathway(GO:1900748)
0.0 0.2 GO:0010626 negative regulation of Schwann cell proliferation(GO:0010626)
0.0 0.2 GO:0008582 regulation of synaptic growth at neuromuscular junction(GO:0008582)
0.0 0.2 GO:1904684 negative regulation of metalloendopeptidase activity(GO:1904684)
0.0 0.2 GO:0038030 non-canonical Wnt signaling pathway via MAPK cascade(GO:0038030) non-canonical Wnt signaling pathway via JNK cascade(GO:0038031)
0.0 1.1 GO:0006270 DNA replication initiation(GO:0006270)
0.0 0.3 GO:0045198 establishment of epithelial cell apical/basal polarity(GO:0045198)
0.0 0.1 GO:0006808 regulation of nitrogen utilization(GO:0006808) nitrogen utilization(GO:0019740) regulation of cellular pH reduction(GO:0032847)
0.0 0.2 GO:0018158 protein oxidation(GO:0018158)
0.0 0.2 GO:0006682 galactosylceramide biosynthetic process(GO:0006682) galactolipid biosynthetic process(GO:0019375)
0.0 0.1 GO:0015074 DNA integration(GO:0015074)
0.0 0.0 GO:0097534 lymphoid lineage cell migration(GO:0097534) lymphoid lineage cell migration into thymus(GO:0097535)
0.0 0.2 GO:0042482 artery smooth muscle contraction(GO:0014824) positive regulation of odontogenesis(GO:0042482)
0.0 0.3 GO:0021692 cerebellar Purkinje cell layer morphogenesis(GO:0021692)
0.0 0.1 GO:1901525 negative regulation of macromitophagy(GO:1901525)
0.0 0.0 GO:0072014 proximal tubule development(GO:0072014)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0097149 centralspindlin complex(GO:0097149)
0.0 0.3 GO:0008091 spectrin(GO:0008091)
0.0 0.1 GO:1990257 piccolo-bassoon transport vesicle(GO:1990257)
0.0 0.1 GO:0000811 GINS complex(GO:0000811)
0.0 0.3 GO:0035867 alphav-beta3 integrin-IGF-1-IGF1R complex(GO:0035867)
0.0 0.1 GO:0097129 cyclin D2-CDK4 complex(GO:0097129)
0.0 1.0 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.8 GO:0017153 sodium:dicarboxylate symporter activity(GO:0017153)
0.2 1.1 GO:0005332 gamma-aminobutyric acid:sodium symporter activity(GO:0005332)
0.2 0.5 GO:0035402 histone kinase activity (H3-T11 specific)(GO:0035402)
0.1 0.3 GO:0071936 coreceptor activity involved in Wnt signaling pathway(GO:0071936)
0.1 0.4 GO:0016842 amidine-lyase activity(GO:0016842)
0.1 0.2 GO:0004962 endothelin receptor activity(GO:0004962)
0.0 0.2 GO:0047275 glucosaminylgalactosylglucosylceramide beta-galactosyltransferase activity(GO:0047275)
0.0 0.4 GO:0043559 insulin binding(GO:0043559)
0.0 0.3 GO:0048495 GTPase inhibitor activity(GO:0005095) Roundabout binding(GO:0048495)
0.0 0.1 GO:0001888 glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity(GO:0001888)
0.0 0.1 GO:0005128 erythropoietin receptor binding(GO:0005128)
0.0 0.3 GO:0008140 cAMP response element binding protein binding(GO:0008140)
0.0 1.0 GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538)
0.0 0.1 GO:0015319 sodium:inorganic phosphate symporter activity(GO:0015319)
0.0 0.2 GO:0035033 histone deacetylase regulator activity(GO:0035033)
0.0 0.4 GO:0048018 receptor agonist activity(GO:0048018)
0.0 0.1 GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0008454)
0.0 0.0 GO:0046899 nucleoside triphosphate adenylate kinase activity(GO:0046899)
0.0 0.1 GO:0008467 [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity(GO:0008467)
0.0 0.0 GO:0050510 N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity(GO:0050510)
0.0 0.1 GO:0051434 BH3 domain binding(GO:0051434)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.8 SA G2 AND M PHASES Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition.
0.1 1.0 SA REG CASCADE OF CYCLIN EXPR Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases.
0.0 0.4 PID WNT SIGNALING PATHWAY Wnt signaling network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.8 REACTOME G2 M DNA DAMAGE CHECKPOINT Genes involved in G2/M DNA damage checkpoint
0.1 1.1 REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS Genes involved in Na+/Cl- dependent neurotransmitter transporters
0.1 0.8 REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS Genes involved in Bile salt and organic anion SLC transporters
0.1 1.0 REACTOME G1 S SPECIFIC TRANSCRIPTION Genes involved in G1/S-Specific Transcription
0.0 0.5 REACTOME KINESINS Genes involved in Kinesins
0.0 0.3 REACTOME ACTIVATION OF RAC Genes involved in Activation of Rac
0.0 0.2 REACTOME IL 7 SIGNALING Genes involved in Interleukin-7 signaling