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GSE58827: Dynamics of the Mouse Liver

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Results for Sox13

Z-value: 0.51

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Transcription factors associated with Sox13

Gene Symbol Gene ID Gene Info
Sox13
ENSMUSG00000070643.5 SRY (sex determining region Y)-box 13

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Sox13mm10_v2_chr1_-_133424377_1334244040.316.6e-02Click!

Activity profile of Sox13 motif

Sorted Z-values of Sox13 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr11_-_99438143 3.49 ENSMUST00000017743.2
Krt20
keratin 20
chr3_-_75270073 1.76 ENSMUST00000039047.4
Serpini2
serine (or cysteine) peptidase inhibitor, clade I, member 2
chr12_+_36314160 1.58 ENSMUST00000041407.5
Sostdc1
sclerostin domain containing 1
chr6_+_122513583 1.47 ENSMUST00000032210.7
ENSMUST00000148517.1
Mfap5
microfibrillar associated protein 5
chr6_+_122513643 1.44 ENSMUST00000118626.1
Mfap5
microfibrillar associated protein 5
chr12_+_24708984 1.37 ENSMUST00000154588.1
Rrm2
ribonucleotide reductase M2
chr15_-_36879816 1.31 ENSMUST00000100713.2
Gm10384
predicted gene 10384
chr7_-_132813095 1.13 ENSMUST00000106165.1
Fam53b
family with sequence similarity 53, member B
chr8_+_105427634 0.82 ENSMUST00000067305.6
Lrrc36
leucine rich repeat containing 36
chr10_+_53596936 0.78 ENSMUST00000020004.6
Asf1a
ASF1 anti-silencing function 1 homolog A (S. cerevisiae)
chr15_-_34356421 0.77 ENSMUST00000179647.1
9430069I07Rik
RIKEN cDNA 9430069I07 gene
chrX_+_133850980 0.74 ENSMUST00000033602.8
Tnmd
tenomodulin
chr1_+_135729147 0.57 ENSMUST00000027677.7
Csrp1
cysteine and glycine-rich protein 1
chr12_-_104473236 0.56 ENSMUST00000021513.4
Gsc
goosecoid homeobox
chr3_-_95251148 0.49 ENSMUST00000125515.2
ENSMUST00000107195.2
Bnipl
BCL2/adenovirus E1B 19kD interacting protein like
chr13_-_66851513 0.49 ENSMUST00000169322.1
Gm17404
predicted gene, 17404
chr17_+_24886643 0.48 ENSMUST00000117890.1
ENSMUST00000168265.1
ENSMUST00000120943.1
ENSMUST00000068508.6
ENSMUST00000119829.1
Spsb3
splA/ryanodine receptor domain and SOCS box containing 3
chr9_-_75597643 0.44 ENSMUST00000164100.1
Tmod2
tropomodulin 2
chr11_+_74082907 0.43 ENSMUST00000178159.1
Zfp616
zinc finger protein 616
chr2_+_25180737 0.43 ENSMUST00000104999.2
Nrarp
Notch-regulated ankyrin repeat protein
chr4_-_58499398 0.41 ENSMUST00000107570.1
Lpar1
lysophosphatidic acid receptor 1
chr17_-_68004075 0.39 ENSMUST00000024840.5
Arhgap28
Rho GTPase activating protein 28
chr4_+_48585135 0.39 ENSMUST00000030032.6
Tmeff1
transmembrane protein with EGF-like and two follistatin-like domains 1
chr19_-_7241216 0.35 ENSMUST00000025675.9
Naa40
N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
chr3_-_95251049 0.35 ENSMUST00000098871.4
Bnipl
BCL2/adenovirus E1B 19kD interacting protein like
chr1_+_39900883 0.34 ENSMUST00000163854.2
ENSMUST00000168431.1
Map4k4
mitogen-activated protein kinase kinase kinase kinase 4
chr3_+_60877002 0.32 ENSMUST00000099086.2
Gm8325
predicted pseudogene 8325
chr4_+_48585276 0.30 ENSMUST00000123476.1
Tmeff1
transmembrane protein with EGF-like and two follistatin-like domains 1
chr8_-_11008458 0.28 ENSMUST00000040514.6
Irs2
insulin receptor substrate 2
chr10_-_116473418 0.27 ENSMUST00000087965.4
ENSMUST00000164271.1
Kcnmb4
potassium large conductance calcium-activated channel, subfamily M, beta member 4
chr3_-_141982224 0.25 ENSMUST00000029948.8
Bmpr1b
bone morphogenetic protein receptor, type 1B
chr3_+_87906321 0.24 ENSMUST00000005017.8
Hdgf
hepatoma-derived growth factor
chr5_-_8367982 0.23 ENSMUST00000088761.4
ENSMUST00000115386.1
ENSMUST00000050166.7
ENSMUST00000046838.7
ENSMUST00000115388.2
ENSMUST00000088744.5
ENSMUST00000115385.1
Adam22
a disintegrin and metallopeptidase domain 22
chr3_+_34649987 0.22 ENSMUST00000099151.2
Sox2
SRY-box containing gene 2
chr10_-_53647080 0.21 ENSMUST00000169866.1
Fam184a
family with sequence similarity 184, member A
chr6_-_56362356 0.20 ENSMUST00000044505.7
ENSMUST00000166102.1
ENSMUST00000164037.1
ENSMUST00000114327.2
Pde1c
phosphodiesterase 1C
chr19_-_19001099 0.19 ENSMUST00000040153.8
ENSMUST00000112828.1
Rorb
RAR-related orphan receptor beta
chr2_+_70039114 0.14 ENSMUST00000060208.4
Myo3b
myosin IIIB
chr1_-_93101825 0.12 ENSMUST00000112958.2
Kif1a
kinesin family member 1A
chr5_-_86518562 0.12 ENSMUST00000140095.1
Tmprss11g
transmembrane protease, serine 11g
chr15_+_99702278 0.11 ENSMUST00000023759.4
Smarcd1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
chr13_-_66852017 0.11 ENSMUST00000059329.6
Gm17449
predicted gene, 17449
chr1_+_17145357 0.11 ENSMUST00000026879.7
Gdap1
ganglioside-induced differentiation-associated-protein 1
chr13_-_22102764 0.09 ENSMUST00000075055.2
Vmn1r189
vomeronasal 1 receptor 189
chr18_+_69593361 0.07 ENSMUST00000114978.2
ENSMUST00000114977.1
Tcf4
transcription factor 4
chr10_-_117238665 0.06 ENSMUST00000020392.4
9530003J23Rik
RIKEN cDNA 9530003J23 gene
chr11_-_77489666 0.04 ENSMUST00000037593.7
ENSMUST00000092892.3
Ankrd13b
ankyrin repeat domain 13b
chr13_-_66355385 0.03 ENSMUST00000099416.3
Vmn2r-ps104
vomeronasal 2, receptor, pseudogene 104
chr7_-_84679346 0.03 ENSMUST00000069537.2
ENSMUST00000178385.1
Zfand6
zinc finger, AN1-type domain 6
chr4_-_115781012 0.02 ENSMUST00000106521.1
Tex38
testis expressed 38

Network of associatons between targets according to the STRING database.

First level regulatory network of Sox13

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.6 GO:2000016 negative regulation of determination of dorsal identity(GO:2000016)
0.1 3.5 GO:0045109 intermediate filament organization(GO:0045109)
0.1 0.4 GO:1904565 response to 1-oleoyl-sn-glycerol 3-phosphate(GO:1904565) cellular response to 1-oleoyl-sn-glycerol 3-phosphate(GO:1904566)
0.1 0.4 GO:1904425 negative regulation of GTP binding(GO:1904425)
0.1 2.9 GO:0097435 fibril organization(GO:0097435)
0.1 0.8 GO:0040009 regulation of growth rate(GO:0040009)
0.1 1.4 GO:0009263 deoxyribonucleotide biosynthetic process(GO:0009263)
0.1 0.2 GO:0050973 detection of mechanical stimulus involved in equilibrioception(GO:0050973)
0.1 0.3 GO:0048165 ovarian cumulus expansion(GO:0001550) fused antrum stage(GO:0048165)
0.0 0.4 GO:0051694 pointed-end actin filament capping(GO:0051694)
0.0 0.6 GO:0014029 neural crest formation(GO:0014029)
0.0 0.4 GO:0014807 regulation of somitogenesis(GO:0014807)
0.0 0.7 GO:0001886 endothelial cell morphogenesis(GO:0001886)
0.0 0.3 GO:0005513 detection of calcium ion(GO:0005513)
0.0 0.8 GO:0034723 DNA replication-dependent nucleosome assembly(GO:0006335) DNA replication-dependent nucleosome organization(GO:0034723)
0.0 0.3 GO:0010748 negative regulation of B cell apoptotic process(GO:0002903) negative regulation of plasma membrane long-chain fatty acid transport(GO:0010748)
0.0 1.1 GO:0035411 catenin import into nucleus(GO:0035411)
0.0 0.3 GO:0061179 negative regulation of insulin secretion involved in cellular response to glucose stimulus(GO:0061179)
0.0 0.4 GO:0043968 histone H2A acetylation(GO:0043968)
0.0 0.2 GO:0046549 retinal cone cell development(GO:0046549)
0.0 0.2 GO:0046069 cGMP catabolic process(GO:0046069)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.4 GO:0005971 ribonucleoside-diphosphate reductase complex(GO:0005971)
0.2 2.9 GO:0043205 microfibril(GO:0001527) fibril(GO:0043205)
0.0 3.5 GO:0005882 intermediate filament(GO:0005882)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.9 GO:0030023 extracellular matrix constituent conferring elasticity(GO:0030023)
0.3 1.4 GO:0061731 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
0.1 1.6 GO:0036122 BMP binding(GO:0036122) BMP receptor activity(GO:0098821)
0.1 0.4 GO:0070915 lysophosphatidic acid receptor activity(GO:0070915)
0.1 0.3 GO:0004111 creatine kinase activity(GO:0004111)
0.1 0.4 GO:1990189 peptide-serine-N-acetyltransferase activity(GO:1990189)
0.0 0.2 GO:0008502 melatonin receptor activity(GO:0008502)
0.0 0.3 GO:0005025 transforming growth factor beta receptor activity, type I(GO:0005025)
0.0 0.2 GO:0004117 calmodulin-dependent cyclic-nucleotide phosphodiesterase activity(GO:0004117) calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity(GO:0048101)
0.0 0.4 GO:0005523 tropomyosin binding(GO:0005523)
0.0 0.1 GO:0001011 transcription factor activity, sequence-specific DNA binding, RNA polymerase recruiting(GO:0001011) transcription factor activity, TFIIB-class binding(GO:0001087)
0.0 1.8 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.0 0.6 GO:0001103 RNA polymerase II repressing transcription factor binding(GO:0001103)
0.0 0.2 GO:0001222 transcription corepressor binding(GO:0001222)
0.0 0.2 GO:0035198 miRNA binding(GO:0035198)
0.0 0.3 GO:0015269 calcium-activated potassium channel activity(GO:0015269)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.8 PID BMP PATHWAY BMP receptor signaling
0.0 2.9 PID NOTCH PATHWAY Notch signaling pathway
0.0 1.4 PID E2F PATHWAY E2F transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.4 REACTOME G1 S SPECIFIC TRANSCRIPTION Genes involved in G1/S-Specific Transcription
0.0 0.3 REACTOME SOS MEDIATED SIGNALLING Genes involved in SOS-mediated signalling