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GSE58827: Dynamics of the Mouse Liver

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Results for UGACCUA

Z-value: 0.15

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miRNA associated with seed UGACCUA

NamemiRBASE accession
mmu-miR-192-5p
MIMAT0000517
mmu-miR-215-5p
MIMAT0000904

Activity profile of UGACCUA motif

Sorted Z-values of UGACCUA motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr13_-_37050237 0.25 ENSMUST00000164727.1
F13a1
coagulation factor XIII, A1 subunit
chr11_+_98907801 0.20 ENSMUST00000092706.6
Cdc6
cell division cycle 6
chr12_+_24831583 0.19 ENSMUST00000110942.3
ENSMUST00000078902.6
Mboat2
membrane bound O-acyltransferase domain containing 2
chr5_+_72647779 0.19 ENSMUST00000087212.3
Nipal1
NIPA-like domain containing 1
chr4_+_123282778 0.18 ENSMUST00000106243.1
ENSMUST00000106241.1
ENSMUST00000080178.6
Pabpc4
poly(A) binding protein, cytoplasmic 4
chr1_-_131138232 0.17 ENSMUST00000016670.7
Dyrk3
dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3
chr2_+_69822370 0.17 ENSMUST00000053087.3
Klhl23
kelch-like 23
chr19_-_41802028 0.16 ENSMUST00000026150.8
ENSMUST00000177495.1
ENSMUST00000163265.1
Arhgap19
Rho GTPase activating protein 19
chr12_-_26456423 0.15 ENSMUST00000020970.7
Rsad2
radical S-adenosyl methionine domain containing 2
chr14_-_73325773 0.12 ENSMUST00000022701.6
Rb1
retinoblastoma 1
chr1_-_97661950 0.12 ENSMUST00000053033.7
ENSMUST00000149927.1
D1Ertd622e
DNA segment, Chr 1, ERATO Doi 622, expressed
chrX_+_106920618 0.11 ENSMUST00000060576.7
Lpar4
lysophosphatidic acid receptor 4
chr4_+_21931291 0.10 ENSMUST00000029908.7
Faxc
failed axon connections homolog (Drosophila)
chr2_-_178414460 0.10 ENSMUST00000058678.4
Ppp1r3d
protein phosphatase 1, regulatory subunit 3D
chrX_+_49470450 0.10 ENSMUST00000114904.3
Arhgap36
Rho GTPase activating protein 36
chrX_-_164258186 0.10 ENSMUST00000112265.2
Bmx
BMX non-receptor tyrosine kinase
chr2_-_45113255 0.09 ENSMUST00000068415.4
ENSMUST00000127520.1
Zeb2
zinc finger E-box binding homeobox 2
chr2_+_27886416 0.09 ENSMUST00000028280.7
Col5a1
collagen, type V, alpha 1
chrX_-_48034842 0.08 ENSMUST00000039026.7
Apln
apelin
chr9_-_44234014 0.07 ENSMUST00000037644.6
Cbl
Casitas B-lineage lymphoma
chr9_+_75071148 0.07 ENSMUST00000123128.1
Myo5a
myosin VA
chrX_+_96096034 0.06 ENSMUST00000117399.1
Msn
moesin
chr13_+_111686178 0.06 ENSMUST00000109272.2
Mier3
mesoderm induction early response 1, family member 3
chr3_+_18054258 0.06 ENSMUST00000026120.6
Bhlhe22
basic helix-loop-helix family, member e22
chr10_-_10472314 0.06 ENSMUST00000179956.1
ENSMUST00000172530.1
ENSMUST00000132573.1
Adgb
androglobin
chr1_-_135105210 0.06 ENSMUST00000044828.7
Lgr6
leucine-rich repeat-containing G protein-coupled receptor 6
chr1_-_54926311 0.06 ENSMUST00000179030.1
ENSMUST00000044359.9
Ankrd44
ankyrin repeat domain 44
chr2_+_162931520 0.05 ENSMUST00000130411.1
Srsf6
serine/arginine-rich splicing factor 6
chr2_-_33431324 0.05 ENSMUST00000113158.1
Zbtb34
zinc finger and BTB domain containing 34
chrX_+_23693043 0.05 ENSMUST00000035766.6
ENSMUST00000101670.2
Wdr44
WD repeat domain 44
chr15_-_35155750 0.05 ENSMUST00000067033.7
ENSMUST00000018476.7
Stk3
serine/threonine kinase 3
chr9_+_59750876 0.05 ENSMUST00000136740.1
ENSMUST00000135298.1
ENSMUST00000128341.1
Myo9a
myosin IXa
chr12_-_41485751 0.04 ENSMUST00000043884.4
Lrrn3
leucine rich repeat protein 3, neuronal
chr5_+_32458974 0.04 ENSMUST00000015100.8
Ppp1cb
protein phosphatase 1, catalytic subunit, beta isoform
chr11_-_116027961 0.04 ENSMUST00000106454.1
H3f3b
H3 histone, family 3B
chr6_+_100704709 0.04 ENSMUST00000032157.7
Gxylt2
glucoside xylosyltransferase 2
chr3_-_27710413 0.04 ENSMUST00000046157.4
Fndc3b
fibronectin type III domain containing 3B
chr4_+_149586432 0.03 ENSMUST00000105691.1
Clstn1
calsyntenin 1
chr6_-_120038647 0.03 ENSMUST00000088646.5
ENSMUST00000177761.1
ENSMUST00000088644.6
ENSMUST00000060043.6
Wnk1
WNK lysine deficient protein kinase 1
chr9_+_35421541 0.03 ENSMUST00000119129.2
Cdon
cell adhesion molecule-related/down-regulated by oncogenes
chr18_+_66458587 0.03 ENSMUST00000025399.7
Pmaip1
phorbol-12-myristate-13-acetate-induced protein 1
chr19_+_27217357 0.03 ENSMUST00000047645.6
ENSMUST00000167487.1
Vldlr
very low density lipoprotein receptor
chr15_+_6708372 0.02 ENSMUST00000061656.6
Rictor
RPTOR independent companion of MTOR, complex 2
chr4_+_8691303 0.02 ENSMUST00000051558.3
Chd7
chromodomain helicase DNA binding protein 7
chr1_+_127774164 0.02 ENSMUST00000027587.8
ENSMUST00000112570.1
Ccnt2
cyclin T2
chr8_-_60983215 0.02 ENSMUST00000004430.7
ENSMUST00000110301.1
ENSMUST00000093490.2
Clcn3
chloride channel 3
chr16_+_31948513 0.01 ENSMUST00000023460.6
ENSMUST00000115178.1
Ncbp2
nuclear cap binding protein subunit 2
chr16_-_52454074 0.01 ENSMUST00000023312.7
Alcam
activated leukocyte cell adhesion molecule
chr15_-_8444449 0.01 ENSMUST00000052965.6
Nipbl
Nipped-B homolog (Drosophila)
chr1_-_152090308 0.01 ENSMUST00000044581.7
1700025G04Rik
RIKEN cDNA 1700025G04 gene
chr6_+_65042575 0.01 ENSMUST00000031984.6
Smarcad1
SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
chrX_-_95444789 0.01 ENSMUST00000084535.5
Amer1
APC membrane recruitment 1
chr2_+_48814109 0.01 ENSMUST00000063886.3
Acvr2a
activin receptor IIA
chr10_+_19356558 0.01 ENSMUST00000053225.5
Olig3
oligodendrocyte transcription factor 3
chr7_-_100583072 0.01 ENSMUST00000152876.1
ENSMUST00000150042.1
Mrpl48
mitochondrial ribosomal protein L48
chr10_-_39133848 0.00 ENSMUST00000134279.1
ENSMUST00000139743.1
ENSMUST00000149949.1
ENSMUST00000124941.1
ENSMUST00000125042.1
ENSMUST00000063204.2
Fam229b
family with sequence similarity 229, member B
chr6_-_97617536 0.00 ENSMUST00000113355.2
Frmd4b
FERM domain containing 4B
chr1_+_60181495 0.00 ENSMUST00000160834.1
Nbeal1
neurobeachin like 1

Network of associatons between targets according to the STRING database.

First level regulatory network of UGACCUA

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0034165 positive regulation of toll-like receptor 9 signaling pathway(GO:0034165)
0.0 0.1 GO:0071922 establishment of sister chromatid cohesion(GO:0034085) cohesin loading(GO:0071921) regulation of cohesin loading(GO:0071922)
0.0 0.2 GO:0035617 stress granule disassembly(GO:0035617)
0.0 0.1 GO:0043396 corticotropin-releasing hormone secretion(GO:0043396) regulation of corticotropin-releasing hormone secretion(GO:0043397) positive regulation of corticotropin-releasing hormone secretion(GO:0051466) regulation of G-protein coupled receptor internalization(GO:1904020)
0.0 0.1 GO:1903225 negative regulation of endodermal cell differentiation(GO:1903225)
0.0 0.1 GO:1990523 bone regeneration(GO:1990523)
0.0 0.2 GO:0072378 blood coagulation, fibrin clot formation(GO:0072378)
0.0 0.1 GO:0051643 endoplasmic reticulum localization(GO:0051643)
0.0 0.1 GO:1902748 positive regulation of lens fiber cell differentiation(GO:1902748)
0.0 0.0 GO:0060800 regulation of cell differentiation involved in embryonic placenta development(GO:0060800)
0.0 0.1 GO:0005981 regulation of glycogen catabolic process(GO:0005981)
0.0 0.1 GO:0010764 negative regulation of fibroblast migration(GO:0010764)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0005588 collagen type V trimer(GO:0005588)
0.0 0.1 GO:0035189 Rb-E2F complex(GO:0035189)
0.0 0.1 GO:0042642 actomyosin, myosin complex part(GO:0042642)
0.0 0.1 GO:0042587 glycogen granule(GO:0042587)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0047184 1-acylglycerophosphocholine O-acyltransferase activity(GO:0047184)
0.0 0.2 GO:0003810 protein-glutamine gamma-glutamyltransferase activity(GO:0003810)
0.0 0.1 GO:0070915 lysophosphatidic acid receptor activity(GO:0070915)
0.0 0.1 GO:0061676 importin-alpha family protein binding(GO:0061676)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX Genes involved in CDC6 association with the ORC:origin complex
0.0 0.2 REACTOME COMMON PATHWAY Genes involved in Common Pathway
0.0 0.1 REACTOME INHIBITION OF REPLICATION INITIATION OF DAMAGED DNA BY RB1 E2F1 Genes involved in Inhibition of replication initiation of damaged DNA by RB1/E2F1