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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for RcnR

Z-value: 1.04

Transcription factors associated with RcnR

Gene Symbol Gene ID Gene Info
rcnR
rcnR RcnR DNA-binding transcriptional repressor

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
rcnR0.991.2e-06Click!

Activity profile of RcnR motif

Sorted Z-values of RcnR motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
rcnR 9.47
rcnR
RcnR DNA-binding transcriptional repressor
rcnAB 5.24
rcnB
rcnA
periplasmic protein involved in nickel/cobalt export
Ni2+/Co2+ exporter

Network of associatons between targets according to the STRING database.

First level regulatory network of RcnR

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.7 5.2 GO:0072507 nickel cation transport(GO:0015675) nickel cation transmembrane transport(GO:0035444) divalent inorganic cation homeostasis(GO:0072507)
0.1 9.5 GO:1903507 negative regulation of transcription, DNA-templated(GO:0045892) negative regulation of RNA biosynthetic process(GO:1902679) negative regulation of nucleic acid-templated transcription(GO:1903507)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 5.2 GO:0030288 outer membrane-bounded periplasmic space(GO:0030288)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.3 5.2 GO:0015099 nickel cation transmembrane transporter activity(GO:0015099)