GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
rstA Links RegulonDB EcoCyc	rstA	RstA transcriptional regulator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
rstA		0.60	1.2e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
narGHJI Show fit	2.27		narG Links RegulonDB EcoCyc Show fit narI Links RegulonDB EcoCyc Show fit narH Links RegulonDB EcoCyc Show fit narJ Links RegulonDB EcoCyc Show fit	nitrate reductase A, α subunit nitrate reductase A, γ subunit nitrate reductase A, β subunit molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1
ompF Show fit	1.20		ompF Links RegulonDB EcoCyc Show fit	outer membrane porin F
asr Show fit	0.43		asr Links RegulonDB EcoCyc Show fit	acid shock protein
csgDEFG Show fit	0.20		csgG Links RegulonDB EcoCyc Show fit csgF Links RegulonDB EcoCyc Show fit csgE Links RegulonDB EcoCyc Show fit csgD Links RegulonDB EcoCyc Show fit	curli secretion channel curli assembly component curli transport specificity factor CsgD DNA-binding transcriptional dual regulator

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.8	2.3	GO:0071941	anaerobic electron transport chain(GO:0019645) nitrogen cycle metabolic process(GO:0071941)
0.1	1.2	GO:0006855	drug transmembrane transport(GO:0006855)
0.1	0.4	GO:0010043	response to zinc ion(GO:0010043)
0.0	0.2	GO:1900190	positive regulation of protein complex assembly(GO:0031334) regulation of multi-organism process(GO:0043900) regulation of single-species biofilm formation(GO:1900190) positive regulation of DNA-templated transcription, initiation(GO:2000144)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.8	2.3	GO:0031235	intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235)
0.2	1.2	GO:0046930	pore complex(GO:0046930)
0.0	0.2	GO:0031246	intrinsic component of periplasmic side of cell outer membrane(GO:0031246)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.6	2.3	GO:0008940	nitrate reductase activity(GO:0008940) metallochaperone activity(GO:0016530)
0.4	1.2	GO:0042912	bacteriocin transmembrane transporter activity(GO:0022885) colicin transmembrane transporter activity(GO:0042912)
0.0	0.2	GO:0001159	bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)