GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
argP Links RegulonDB EcoCyc	argP	ArgP transcriptional activator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
argP		0.76	4.3e-06	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
nrdAB-yfaE Show fit	20.55		nrdA Links RegulonDB EcoCyc Show fit nrdB Links RegulonDB EcoCyc Show fit yfaE Links RegulonDB EcoCyc Show fit	ribonucleoside diphosphate reductase 1, α subunit ribonucleoside diphosphate reductase 1, β subunit, ferritin-like 2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance
gdhA Show fit	17.30		gdhA Links RegulonDB EcoCyc Show fit	glutamate dehydrogenase
lysC Show fit	11.14		lysC Links RegulonDB EcoCyc Show fit	aspartate kinase III
argP Show fit	8.91		argP Links RegulonDB EcoCyc Show fit	ArgP transcriptional activator
dapD Show fit	8.90		dapD Links RegulonDB EcoCyc Show fit	tetrahydrodipicolinate succinylase
lysP Show fit	6.89		lysP Links RegulonDB EcoCyc Show fit	lysine:H+ symporter
dnaAN-recF Show fit	4.12		dnaA Links RegulonDB EcoCyc Show fit recF Links RegulonDB EcoCyc Show fit dnaN Links RegulonDB EcoCyc Show fit	chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator ssDNA and dsDNA binding, ATP binding DNA polymerase III, β subunit
dapB Show fit	2.01		dapB Links RegulonDB EcoCyc Show fit	4-hydroxy-tetrahydrodipicolinate reductase
lysA Show fit	1.43		lysA Links RegulonDB EcoCyc Show fit	diaminopimelate decarboxylase

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
3.7	11.1	GO:0009090	homoserine biosynthetic process(GO:0009090) homoserine metabolic process(GO:0009092)
3.6	10.9	GO:0019877	diaminopimelate biosynthetic process(GO:0019877)
3.4	20.5	GO:0009263	deoxyribonucleotide biosynthetic process(GO:0009263)
3.0	8.9	GO:0030174	regulation of DNA-dependent DNA replication initiation(GO:0030174) negative regulation of DNA-dependent DNA replication(GO:2000104)
2.2	17.3	GO:0043650	dicarboxylic acid biosynthetic process(GO:0043650)
2.1	4.1	GO:0006275	regulation of DNA replication(GO:0006275)
1.4	6.9	GO:1902022	lysine transport(GO:0015819) L-lysine transport(GO:1902022)
0.4	1.4	GO:0046451	diaminopimelate metabolic process(GO:0046451)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.9	20.5	GO:1990204	oxidoreductase complex(GO:1990204)
0.1	43.5	GO:0005829	cytosol(GO:0005829)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
6.8	20.5	GO:0061731	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
3.7	11.1	GO:0004072	aspartate kinase activity(GO:0004072) amino acid kinase activity(GO:0019202)
2.9	17.3	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638)
1.8	8.9	GO:0016748	succinyltransferase activity(GO:0016748)
1.3	8.9	GO:0003681	bent DNA binding(GO:0003681)
0.2	2.0	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor(GO:0016628)
0.1	4.1	GO:1990837	sequence-specific double-stranded DNA binding(GO:1990837)
0.1	1.4	GO:0016831	carboxy-lyase activity(GO:0016831)
0.0	6.9	GO:0042802	identical protein binding(GO:0042802)