yeaGH	31.8791	Sigma54	yeaG|yeaG|yeaG|protein kinase	yeaH|yeaH|yeaH|conserved protein
gltI-sroC-gltJKL	27.4515	Sigma54	sroC|sroC|sroC|SroC	gltI|gltI|gltI|glutamate / aspartate ABC transporter - periplasmic binding protein	gltK|gltK|gltK|glutamate / aspartate ABC transporter - membrane subunit	gltJ|gltJ|gltJ|glutamate / aspartate ABC transporter - membrane subunit	gltL|gltL|gltL|glutamate / aspartate ABC transporter - ATP binding subunit
glmY	21.8972	Sigma54	glmY|glmY|glmY|GlmY
astCADBE	21.3457	Sigma54	astA|astA|astA|arginine succinyltransferase	astB|astB|astB|succinylarginine dihydrolase	astC|astC|astC|succinylornithine transaminase	astD|astD|astD|aldehyde dehydrogenase	astE|astE|astE|succinylglutamate desuccinylase
ibpB	19.8265	Sigma54	ibpB|ibpB|ibpB|small heat shock protein IbpB
nac	19.7569	Sigma54	nac|nac|nac|Nac DNA-binding transcriptional dual regulator
prpBCDE	19.4207	Sigma54	prpD|prpD|prpD|2-methylcitrate dehydratase	prpE|prpE|prpE|propionyl-CoA synthetase	prpB|prpB|prpB|2-methylisocitrate lyase	prpC|prpC|prpC|2-methylcitrate synthase
zraP	19.2645	Sigma54	zraP|zraP|zraP|zinc responsive, periplasmic protein with chaperone activity
rhaD	18.7625	Sigma54	rhaD|rhaD|rhaD|rhamnulose-1-phosphate aldolase
yaaU	18.5279	Sigma54	yaaU|yaaU|yaaU|putative transport protein YaaU, major facilitator superfamily (MFS)
emrD	17.5083	Sigma54	emrD|emrD|emrD|multidrug efflux pump EmrD
pspG	17.4256	Sigma54	pspG|pspG|pspG|phage shock protein G
hydN-hypF	17.082	Sigma54	hypF|hypF|hypF|hydrogenase maturation protein, carbamoyltransferase	hydN|hydN|hydN|putative electron transport protein HydN
dcuD	16.105	Sigma54	dcuD|dcuD|dcuD|putative transport protein, C4-dicarboxylate uptake C family
rtcR	16.0192	Sigma54	rtcR|rtcR|rtcR|RtcR DNA-binding transcriptional activator
yahE	15.5693	Sigma54	yahE|yahE|yahE|predicted protein
ygfK-ssnA	15.3686	Sigma54	ygfK|ygfK|ygfK|predicted oxidoreductase, Fe-S subunit	ssnA|ssnA|ssnA|predicted chlorohydrolase/aminohydrolase
actP	12.5439	Sigma54	actP|actP|actP|acetate / glycolate : cation symporter
atoDAEB	11.2134	Sigma54	atoB|atoB|atoB|acetyl-CoA acetyltransferase	atoA|atoA|atoA|acetyl-CoA:acetoacetyl-CoA transferase, &beta; subunit	atoD|atoD|atoD|acetyl-CoA:acetoacetyl-CoA transferase, &alpha; subunit	atoE|atoE|atoE|predicted short chain fatty acid transporter
xdhABC	10.4995	Sigma54	xdhA|xdhA|xdhA|xanthine dehydrogenase subunit	xdhB|xdhB|xdhB|xanthine dehydrogenase subunit, FAD-binding domain	xdhC|xdhC|xdhC|xanthine dehydrogenase, Fe-S subunit
rtcBA	9.62586	Sigma54	rtcB|rtcB|rtcB|RNA-splicing ligase RtcB	rtcA|rtcA|rtcA|RNA 3'-terminal phosphate cyclase
rpoH	9.15026	Sigma54	rpoH|rpoH|rpoH|RNA polymerase, sigma 32 (sigma H) factor
rutABCDEFG	9.04673	Sigma54	rutC|rutC|rutC|predicted aminoacrylate peracid reductase	rutB|rutB|rutB|peroxyureidoacrylate / ureidoacrylate amido hydrolase	rutA|rutA|rutA|pyrimidine oxygenase	rutG|rutG|rutG|uracil:H<sup>+</sup> symporter RutG	rutF|rutF|rutF|flavin reductase	rutE|rutE|rutE|predicted malonic semialdehyde reductase	rutD|rutD|rutD|predicted aminoacrylate hydrolase
aslB	8.32488	Sigma54	aslB|aslB|aslB|predicted anaerobic sulfatase maturation enzyme
hyfABCDEFGHIJR-focB	6.62314	Sigma54	hyfJ|hyfJ|hyfJ|hydrogenase 4 component J, putative protein processing element	hyfI|hyfI|hyfI|hydrogenase 4, small subunit	hyfH|hyfH|hyfH|hydrogenase 4, component H	hyfC|hyfC|hyfC|hydrogenase 4, component C	hyfB|hyfB|hyfB|hydrogenase 4, component B	hyfA|hyfA|hyfA|hydrogenase 4, component A	hyfG|hyfG|hyfG|hydrogenase 4, large subunit	hyfF|hyfF|hyfF|hydrogenase 4, component F	hyfE|hyfE|hyfE|hydrogenase 4, component E	hyfD|hyfD|hyfD|hydrogenase 4, component D	hyfR|hyfR|hyfR|HyfR DNA-binding transcriptional activator	focB|focB|focB|FocB formate FNT transporter
nikABCDER	4.82342	Sigma54	nikB|nikB|nikB|nickel ABC transporter - membrane subunit	nikC|nikC|nikC|nickel ABC transporter - membrane subunit	nikA|nikA|nikA|nickel ABC transporter - periplasmic binding protein	nikD|nikD|nikD|nickel ABC transporter - ATP binding subunit	nikE|nikE|nikE|nickel ABC transporter - ATP binding subunit	nikR|nikR|nikR|NikR DNA-binding transcriptional repressor, Ni-binding
pspABCDE	4.70204	Sigma54	pspE|pspE|pspE|thiosulfate sulfurtransferase	pspD|pspD|pspD|peripheral inner membrane phage-shock protein	pspC|pspC|pspC|PspC transcriptional regulator; toxin of a PspC-PspB toxin-antitoxin pair	pspB|pspB|pspB|stimulates PspC-mediated transcriptional activation of the psp operon; antitoxin of a PspC-PspB toxin-antitoxin pair	pspA|pspA|pspA|regulatory protein for the phage shock operon, protects membrane integrity
norVW	4.17183	Sigma54	norW|norW|norW|NADH:flavorubredoxin reductase	norV|norV|norV|flavorubredoxin
yhjC	4.03247	Sigma54	yhjC|yhjC|yhjC|predicted DNA-binding transcriptional regulator
yhdWXYZ	3.37035	Sigma54	yhdZ|yhdZ|yhdZ|putative transport protein, ABC superfamily - periplasmic binding protein	yhdY|yhdY|yhdY|putative transport protein, ABC superfamily - membrane component	yhdX|yhdX|yhdX|putative transport protein, ABC superfamily - ATP-binding component	yhdW|yhdW|yhdW|putative transport protein, ABC superfamily - membrane component
hypABCDE-fhlA	2.71083	Sigma54	fhlA|fhlA|fhlA|FhlA transcriptional activator	hypE|hypE|hypE|hydrogenase maturation protein, carbamoyl dehydratase	hypD|hypD|hypD|HypD, scaffold protein for assembly of the Fe-(CN)<sub>2</sub>CO cofactor	hypA|hypA|hypA|accessory protein for nickel incorporation into hydrogenase 3	hypC|hypC|hypC|HypC, protein involved in hydrogenase 3 maturation	hypB|hypB|hypB|accessory protein for nickel incorporation into hydrogenase isoenzymes
zraSR	2.4515	Sigma54	zraS|zraS|zraS|ZraS sensory histidine kinase	zraR|zraR|zraR|ZraR transcriptional activator
hypABCDE	2.00393	Sigma54	hypE|hypE|hypE|hydrogenase maturation protein, carbamoyl dehydratase	hypD|hypD|hypD|HypD, scaffold protein for assembly of the Fe-(CN)<sub>2</sub>CO cofactor	hypA|hypA|hypA|accessory protein for nickel incorporation into hydrogenase 3	hypC|hypC|hypC|HypC, protein involved in hydrogenase 3 maturation	hypB|hypB|hypB|accessory protein for nickel incorporation into hydrogenase isoenzymes
ddpXABCDF	1.72411	Sigma54	ddpX|ddpX|ddpX|D-Ala-D-Ala dipeptidase	ddpD|ddpD|ddpD|YddP	ddpF|ddpF|ddpF|YddO	ddpA|ddpA|ddpA|YddS	ddpB|ddpB|ddpB|YddR	ddpC|ddpC|ddpC|YddQ
acrD	1.52284	Sigma54	acrD|acrD|acrD|AcrAD-TolC multidrug efflux pump - permease subunit
relA	1.22742	Sigma54	relA|relA|relA|GDP pyrophosphokinase/GTP pyrophosphokinase
chaC	1.0394	Sigma54	chaC|chaC|chaC|predicted glutathione-specific gamma-glutamylcyclotransferase
