Project

GSE80451: E.coli grown aerobically and anaerobically

Navigation
Downloads

Results for RcsB

Z-value: 1.49

Transcription factors associated with RcsB

Gene Symbol Gene ID Gene Info

Activity profile of RcsB motif

Sorted Z-values of RcsB motif

Network of associatons between targets according to the STRING database.

Promoter Score Transcript Gene Gene Info
osmB 9.41 OsmB osmotically inducible lipoprotein
gadBC 4.06 glutamate decarboxylase B subunit
glutamic acid:4-aminobutyrate antiporter
osmC 3.50 osmotically inducible peroxiredoxin
hdeD 2.49 acid-resistance membrane protein
lolA-rarA 1.58 recombination factor
periplasmic chaperone, effects translocation of lipoproteins from inner membrane to outer
ydeP 1.19 acid resistance protein
bdm-sra 0.45 biofilm-dependent modulation protein
30S ribosomal subunit protein S22
hdeAB-yhiD 0.04 inner membrane protein YhiD
HdeB monomer
HdeA monomer, chaperone active form

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 4.0 GO:0045852 pH elevation(GO:0045852) intracellular pH elevation(GO:0051454)
0.5 1.6 GO:0072321 chaperone-mediated protein transport(GO:0072321)
0.4 3.5 GO:0006972 hyperosmotic response(GO:0006972)
0.2 3.7 GO:0009268 response to pH(GO:0009268)
0.1 0.5 GO:1902115 regulation of organelle organization(GO:0033043) regulation of organelle assembly(GO:1902115) regulation of bacterial-type flagellum assembly(GO:1902208)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.6 GO:0005657 replication fork(GO:0005657) replisome(GO:0030894)
0.0 0.5 GO:0015935 small ribosomal subunit(GO:0015935) cytosolic small ribosomal subunit(GO:0022627)
0.0 3.0 GO:0005887 integral component of plasma membrane(GO:0005887)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 3.5 GO:0051920 peroxiredoxin activity(GO:0051920)
0.3 4.1 GO:0015297 antiporter activity(GO:0015297)
0.2 1.6 GO:0008565 protein transporter activity(GO:0008565)
0.0 0.0 GO:0051087 chaperone binding(GO:0051087)