Project

GSE80451: E.coli grown aerobically and anaerobically

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Results for FlhDC

Z-value: 1.06

Transcription factors associated with FlhDC

Gene Symbol Gene ID Gene Info

Activity profile of FlhDC motif

Sorted Z-values of FlhDC motif

Network of associatons between targets according to the STRING database.

Promoter Score Transcript Gene Gene Info
glpABC 4.37 anaerobic glycerol-3-phosphate dehydrogenase subunit A
anaerobic glycerol-3-phosphate dehydrogenase subunit C
anaerobic glycerol-3-phosphate dehydrogenase subunit B
mglBAC 2.13 D-galactose / D-galactoside ABC transporter - ATP binding subunit
D-galactose / D-galactoside ABC transporter - periplasmic binding protein
D-galactose / D-galactoside ABC transporter - membrane subunit
flhBAE 1.30 flagellar biosynthesis protein FlhB
flagellar biosynthesis protein FlhA
flagellar protein
mdh 1.11 malate dehydrogenase
nrfABCDEFG 0.90 activator of formate-dependent nitrite reductase complex
NrfG
formate dependent nitrite reductase - NrfD subunit
formate-dependent nitrite reductase; possible assembly function
formate-dependent nitrite reductase - penta-heme cytochrome c
formate-dependent nitrite reductase, 4Fe-4S subunit
formate dependent nitrite reductase - NrfA subunit
yecR 0.75 predicted protein
ycgR 0.48 molecular brake that regulates flagellar motility in response to c-di-GMP
ppdAB-ygdB-ppdC-recC 0.32 conserved protein
conserved protein
predicted protein
predicted protein
RecC
pdeH 0.30 c-di-GMP phosphodiesterase
napFDAGHBC-ccmABCDEFGH 0.16 ferredoxin-type protein
ferredoxin-type protein
signal peptide-binding chaperone for NapA
periplasmic nitrate reductase, cytochrome c protein
holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmH
large subunit of periplasmic nitrate reductase, molybdoprotein
membrane anchored periplasmic heme chaperone CcmE
ABC complex for formation and release of holoCcmE - membrane subunit CcmD
holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmG
holocytochrome c synthetase - CcmF subunit
ABC complex for formation and release of holoCcmE - ATP binding subunit
ABC complex for formation and release of holoCcmE - membrane subunit CcmC
ABC complex for formation and release of holoCcmE - membrane subunit CcmB
ferredoxin-type protein
subunit of periplasmic nitrate reductase, cytochrome c550 protein
hydN-hypF 0.06 hydrogenase maturation protein, carbamoyltransferase
putative electron transport protein HydN

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.1 GO:0015765 methylgalactoside transport(GO:0015765)
0.4 5.3 GO:0022900 electron transport chain(GO:0022900)
0.4 1.1 GO:0006108 malate metabolic process(GO:0006108)
0.1 0.8 GO:1902021 regulation of bacterial-type flagellum-dependent cell motility(GO:1902021)
0.1 0.3 GO:0006952 defense response(GO:0006952) clearance of foreign intracellular DNA(GO:0044355)
0.1 0.7 GO:0044780 bacterial-type flagellum assembly(GO:0044780) bacterial-type flagellum organization(GO:0044781)
0.1 0.2 GO:0018063 protein-heme linkage(GO:0017003) cytochrome complex assembly(GO:0017004) protein-tetrapyrrole linkage(GO:0017006) cytochrome c-heme linkage(GO:0018063)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.0 GO:0042995 cell projection(GO:0042995)
0.2 4.4 GO:1990204 oxidoreductase complex(GO:1990204)
0.1 0.3 GO:0009338 exodeoxyribonuclease V complex(GO:0009338)
0.1 0.2 GO:0031235 intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235)
0.1 1.1 GO:0019898 extrinsic component of membrane(GO:0019898)
0.0 1.3 GO:0030288 outer membrane-bounded periplasmic space(GO:0030288)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.5 4.4 GO:0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor(GO:0016901)
0.7 2.1 GO:0015592 methylgalactoside transmembrane transporter activity(GO:0015592)
0.2 0.9 GO:0016662 oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor(GO:0016662)
0.1 0.3 GO:0008854 exodeoxyribonuclease V activity(GO:0008854)
0.1 0.5 GO:0035438 cyclic nucleotide binding(GO:0030551) cyclic-di-GMP binding(GO:0035438)
0.1 0.3 GO:0071111 cyclic-guanylate-specific phosphodiesterase activity(GO:0071111)
0.1 0.2 GO:0005048 signal sequence binding(GO:0005048)
0.0 1.1 GO:0016614 oxidoreductase activity, acting on CH-OH group of donors(GO:0016614)
0.0 0.1 GO:0016743 carboxyl- or carbamoyltransferase activity(GO:0016743)