Project
GSE80451: E.coli grown aerobically and anaerobically
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Results for IscR
Z-value: 0.35
Transcription factors associated with IscR
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
iscR
|
iscR | IscR DNA-binding transcriptional dual regulator |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| iscR | 0.73 | 1.6e-01 | Click! |
Activity profile of IscR motif
Sorted Z-values of IscR motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| sufABCDSE | 1.09 |
sufB
sufC
sufA
sufD
sufE
sufS
|
SufB component of SufBCD Fe-S cluster scaffold complex SufC component of SufBCD Fe-S cluster scaffold complex Fe-S transport protein in Fe-S cluster assembly SufD component of SufBCD Fe-S cluster scaffold complex sulfur acceptor for SufS cysteine desulfurase L-cysteine desulfurase |
|
| ydiU | 1.04 |
ydiU
|
conserved protein |
|
| erpA | 0.17 |
erpA
|
essential respiratory protein A |
|
| napFDAGHBC | 0.09 |
napG
napF
napD
napC
napB
napA
napH
|
ferredoxin-type protein ferredoxin-type protein signal peptide-binding chaperone for NapA periplasmic nitrate reductase, cytochrome c protein subunit of periplasmic nitrate reductase, cytochrome c550 protein large subunit of periplasmic nitrate reductase, molybdoprotein ferredoxin-type protein |
|
| iscRSUA | 0.00 |
iscU
iscA
iscS
iscR
|
scaffold protein for iron-sulfur cluster assembly iron-sulfur cluster assembly protein cysteine desulfurase IscR DNA-binding transcriptional dual regulator |
Network of associatons between targets according to the STRING database.
First level regulatory network of IscR
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | GO:0097428 | protein maturation by iron-sulfur cluster transfer(GO:0097428) |
| 0.0 | 0.1 | GO:0051223 | regulation of protein localization(GO:0032880) regulation of protein transport(GO:0051223) regulation of establishment of protein localization(GO:0070201) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.1 | GO:0016783 | sulfurtransferase activity(GO:0016783) |
| 0.0 | 0.1 | GO:0008940 | nitrate reductase activity(GO:0008940) |
| 0.0 | 0.2 | GO:0051537 | 2 iron, 2 sulfur cluster binding(GO:0051537) |