mm9_v1_chr18_+_20823750_20823857	21.2102	AACACUG	NM_013697|Ttr|22139|transthyretin	BC024702|Ttr|22139|transthyretin
mm9_v1_chr9_-_53823107_53823121	20.7216	AACACUG	AK132239|Elmod1|270162|ELMO domain containing 1	NM_177769|Elmod1|270162|ELMO domain containing 1
mm9_v1_chr11_+_68505416_68505481	20.0812	AACACUG	NM_175260|Myh10|77579|myosin, heavy polypeptide 10, non-muscle
mm9_v1_chr9_-_86775154_86775279	15.8759	AACACUG	M83985|Snap91|20616|synaptosomal-associated protein 91	NM_013669|Snap91|20616|synaptosomal-associated protein 91	BC031773|Snap91|20616|synaptosomal-associated protein 91	AK159570|Snap91|20616|synaptosomal-associated protein 91	AK147087|Snap91|20616|synaptosomal-associated protein 91
mm9_v1_chr18_+_5591869_5591894	14.3703	AACACUG	AK014114|Zeb1|21417|zinc finger E-box binding homeobox 1	U26259|Zeb1|21417|zinc finger E-box binding homeobox 1	BC139768|Zeb1|21417|zinc finger E-box binding homeobox 1	BC139769|Zeb1|21417|zinc finger E-box binding homeobox 1	D76432|Zeb1|21417|zinc finger E-box binding homeobox 1	NM_011546|Zeb1|21417|zinc finger E-box binding homeobox 1	BC090987|Zeb1|21417|zinc finger E-box binding homeobox 1	AK135371|Zeb1|21417|zinc finger E-box binding homeobox 1
mm9_v1_chr15_+_78744328_78744471	14.1175	AACACUG	BC049107|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	NM_020271|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	AY366300|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	AK043228|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	BC046955|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	AB041662|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase
mm9_v1_chr9_-_16182674_16182674	13.9999	AACACUG	NM_001080814|Fat3|270120|FAT tumor suppressor homolog 3 (Drosophila)
mm9_v1_chr7_+_95578782_95579025	13.5206	AACACUG	AK054253|Rab38|72433|RAB38, member of RAS oncogene family	NM_028238|Rab38|72433|RAB38, member of RAS oncogene family	AK165682|Rab38|72433|RAB38, member of RAS oncogene family	AK044783|Rab38|72433|RAB38, member of RAS oncogene family	AK009296|Rab38|72433|RAB38, member of RAS oncogene family	AY062237|Rab38|72433|RAB38, member of RAS oncogene family	BC089578|Rab38|72433|RAB38, member of RAS oncogene family	AB232634|Rab38|72433|RAB38, member of RAS oncogene family	AK198599|Rab38|72433|RAB38, member of RAS oncogene family
mm9_v1_chr18_-_31606908_31607087	13.4103	AACACUG	BC052738|Syt4|20983|synaptotagmin IV	BC058208|Syt4|20983|synaptotagmin IV	AK050515|Syt4|20983|synaptotagmin IV	AK220264|Syt4|20983|synaptotagmin IV	AK148681|Syt4|20983|synaptotagmin IV	AK043985|Syt4|20983|synaptotagmin IV	AK083960|Syt4|20983|synaptotagmin IV	AK032106|Syt4|20983|synaptotagmin IV	NM_009308|Syt4|20983|synaptotagmin IV
mm9_v1_chrX_+_97972559_97972657	12.8484	AACACUG	NM_001177780|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK159655|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK167365|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK148464|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chrX_+_162676870_162676901	12.4229	AACACUG	NM_001177961|Gpm6b|14758|glycoprotein m6b	NM_001177962|Gpm6b|14758|glycoprotein m6b	NM_023122|Gpm6b|14758|glycoprotein m6b	AK132778|Gpm6b|14758|glycoprotein m6b
mm9_v1_chrX_+_162782484_162782852	12.3305	AACACUG	NM_001177955|Gpm6b|14758|glycoprotein m6b	NM_001177956|Gpm6b|14758|glycoprotein m6b	NM_001177957|Gpm6b|14758|glycoprotein m6b	NM_001177958|Gpm6b|14758|glycoprotein m6b	NM_001177959|Gpm6b|14758|glycoprotein m6b	NM_001177960|Gpm6b|14758|glycoprotein m6b	AF254869|Gpm6b|14758|glycoprotein m6b	AF254870|Gpm6b|14758|glycoprotein m6b	AF254872|Gpm6b|14758|glycoprotein m6b	AF254873|Gpm6b|14758|glycoprotein m6b	AF254874|Gpm6b|14758|glycoprotein m6b	AF254875|Gpm6b|14758|glycoprotein m6b	AF254878|Gpm6b|14758|glycoprotein m6b	AF254879|Gpm6b|14758|glycoprotein m6b	AK013660|Gpm6b|14758|glycoprotein m6b	AK140714|Gpm6b|14758|glycoprotein m6b	S65737|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr1_-_134539434_134539434	12.2862	AACACUG	NM_001160316|Nfasc|269116|neurofascin
mm9_v1_chr1_+_160292470_160292548	12.0135	AACACUG	AK164117|Astn1|11899|astrotactin 1	NM_007495|Astn1|11899|astrotactin 1	BC094666|Astn1|11899|astrotactin 1
mm9_v1_chr13_+_118391126_118391233	11.841	AACACUG	AK158322|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1	NM_010408|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1
mm9_v1_chr15_+_30102306_30102347	11.57	AACACUG	NM_008729|Ctnnd2|18163|catenin (cadherin associated protein), delta 2	U90331|Ctnnd2|18163|catenin (cadherin associated protein), delta 2
mm9_v1_chrX_+_97969784_97969833	11.3875	AACACUG	NM_001177779|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr1_+_134314029_134314184	11.0184	AACACUG	NM_172516|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AK083696|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AY429676|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AK020880|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	BC130226|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AK132119|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AK172954|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AY208852|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AK145449|Dstyk|213452|dual serine/threonine and tyrosine protein kinase
mm9_v1_chr15_-_93167308_93167408	10.3178	AACACUG	AK148634|Yaf2|67057|YY1 associated factor 2	AB100452|Yaf2|67057|YY1 associated factor 2	AB100453|Yaf2|67057|YY1 associated factor 2	AK005008|Yaf2|67057|YY1 associated factor 2	AK011702|Yaf2|67057|YY1 associated factor 2	NM_024189|Yaf2|67057|YY1 associated factor 2
mm9_v1_chr9_+_120213190_120213236	10.3151	AACACUG	AK083225|Myrip|245049|myosin VIIA and Rab interacting protein	NM_144557|Myrip|245049|myosin VIIA and Rab interacting protein	AK038988|Myrip|245049|myosin VIIA and Rab interacting protein
mm9_v1_chr4_-_135050358_135050475	10.1161	AACACUG	BC057168|Nipal3|74552|NIPA-like domain containing 3	AK018640|Nipal3|74552|NIPA-like domain containing 3	AK138843|Nipal3|74552|NIPA-like domain containing 3	NM_028995|Nipal3|74552|NIPA-like domain containing 3	AK053937|Nipal3|74552|NIPA-like domain containing 3	AK082376|Nipal3|74552|NIPA-like domain containing 3	AK087811|Nipal3|74552|NIPA-like domain containing 3	AK148206|Nipal3|74552|NIPA-like domain containing 3	AK049696|Nipal3|74552|NIPA-like domain containing 3
mm9_v1_chrX_+_97963061_97963090	10.045	AACACUG	AK122474|Dlg3|53310|discs, large homolog 3 (Drosophila)	NM_001177778|Dlg3|53310|discs, large homolog 3 (Drosophila)	BC094368|Dlg3|53310|discs, large homolog 3 (Drosophila)	NM_016747|Dlg3|53310|discs, large homolog 3 (Drosophila)	D87117|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr11_-_87172419_87172533	10.0035	AACACUG	AK053696|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	BC138900|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	BC138903|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	NM_177167|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)
mm9_v1_chr1_-_188529867_188529872	9.92911	AACACUG	X57413|Tgfb2|21808|transforming growth factor, beta 2	NM_009367|Tgfb2|21808|transforming growth factor, beta 2
mm9_v1_chrX_-_49033640_49033666	9.90626	AACACUG	AK083281|Hs6st2|50786|heparan sulfate 6-O-sulfotransferase 2	BC063327|Hs6st2|50786|heparan sulfate 6-O-sulfotransferase 2	AK171680|Hs6st2|50786|heparan sulfate 6-O-sulfotransferase 2	NM_015819|Hs6st2|50786|heparan sulfate 6-O-sulfotransferase 2
mm9_v1_chrX_-_49034778_49034778	9.86592	AACACUG	NM_001077202|Hs6st2|50786|heparan sulfate 6-O-sulfotransferase 2
mm9_v1_chr3_-_116126932_116126949	9.80812	AACACUG	AK043956|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK052560|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK142294|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001080818|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001173553|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)
mm9_v1_chr11_-_20731016_20731238	9.64925	AACACUG	AK041053|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK167557|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	BC019131|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	NM_173752|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK156350|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene
mm9_v1_chr16_-_89818596_89818596	9.63556	AACACUG	AK136856|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	NM_001145887|Tiam1|21844|T-cell lymphoma invasion and metastasis 1
mm9_v1_chr3_+_67868723_67868723	9.47317	AACACUG	EU163407|Schip1|30953|schwannomin interacting protein 1	EU163408|Schip1|30953|schwannomin interacting protein 1	NM_001113420|Schip1|30953|schwannomin interacting protein 1	NM_001113421|Schip1|30953|schwannomin interacting protein 1
mm9_v1_chr7_+_19661548_19661579	9.45762	AACACUG	NM_010058|Dmwd|13401|dystrophia myotonica-containing WD repeat motif
mm9_v1_chr14_+_12386043_12386066	9.06929	AACACUG	BC079595|Ptprg|19270|protein tyrosine phosphatase, receptor type, G	NM_008981|Ptprg|19270|protein tyrosine phosphatase, receptor type, G
mm9_v1_chr9_-_49607164_49607185	8.89592	AACACUG	NM_001081445|Ncam1|17967|neural cell adhesion molecule 1	NM_001113204|Ncam1|17967|neural cell adhesion molecule 1	NM_010875|Ncam1|17967|neural cell adhesion molecule 1
mm9_v1_chr2_+_121692687_121692705	8.67726	AACACUG	BC064446|Casc4|319996|cancer susceptibility candidate 4	NM_177054|Casc4|319996|cancer susceptibility candidate 4	NM_199038|Casc4|319996|cancer susceptibility candidate 4
mm9_v1_chr1_-_134638361_134638397	8.57337	AACACUG	AK052440|Nfasc|269116|neurofascin	NM_001160317|Nfasc|269116|neurofascin	NM_182716|Nfasc|269116|neurofascin
mm9_v1_chr15_-_93426312_93426402	8.50846	AACACUG	AK153711|Prickle1|106042|prickle homolog 1 (Drosophila)	NM_001033217|Prickle1|106042|prickle homolog 1 (Drosophila)
mm9_v1_chr11_+_75007475_75007498	8.4508	AACACUG	AK140456|Rtn4rl1|237847|reticulon 4 receptor-like 1	NM_177708|Rtn4rl1|237847|reticulon 4 receptor-like 1	AK033286|Rtn4rl1|237847|reticulon 4 receptor-like 1
mm9_v1_chr3_+_68376289_68376313	8.40272	AACACUG	NM_013928|Schip1|30953|schwannomin interacting protein 1
mm9_v1_chr15_-_12522310_12522310	8.37204	AACACUG	NM_001081064|Pdzd2|68070|PDZ domain containing 2
mm9_v1_chr10_+_28931448_28931510	8.20772	AACACUG	NM_001162537|9330159F19Rik|212448|RIKEN cDNA 9330159F19 gene	AK034141|9330159F19Rik|212448|RIKEN cDNA 9330159F19 gene	BC138279|9330159F19Rik|212448|RIKEN cDNA 9330159F19 gene	BC138282|9330159F19Rik|212448|RIKEN cDNA 9330159F19 gene
mm9_v1_chr11_+_53380870_53380943	8.1256	AACACUG	AK161223|Kif3a|16568|kinesin family member 3A	NM_008443|Kif3a|16568|kinesin family member 3A	D12645|Kif3a|16568|kinesin family member 3A	AK161920|Kif3a|16568|kinesin family member 3A	AK169425|Kif3a|16568|kinesin family member 3A	BC052707|Kif3a|16568|kinesin family member 3A	BC044720|Kif3a|16568|kinesin family member 3A	AK147078|Kif3a|16568|kinesin family member 3A	BC023936|Kif3a|16568|kinesin family member 3A
mm9_v1_chr1_-_134603848_134603902	7.93896	AACACUG	AK129207|Nfasc|269116|neurofascin	NM_001160318|Nfasc|269116|neurofascin
mm9_v1_chr12_-_119539909_119539930	7.79478	AACACUG	NM_001166385|Sp4|20688|trans-acting transcription factor 4	NM_009239|Sp4|20688|trans-acting transcription factor 4
mm9_v1_chr11_-_108205199_108205207	7.71257	AACACUG	AK147084|Prkca|18750|protein kinase C, alpha	NM_011101|Prkca|18750|protein kinase C, alpha
mm9_v1_chr5_+_18732863_18732863	7.56454	AACACUG	NM_001170746|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chr7_+_107855215_107855319	7.56051	AACACUG	BC079886|Fam168a|319604|family with sequence similarity 168, member A	NM_178764|Fam168a|319604|family with sequence similarity 168, member A	AK043356|Fam168a|319604|family with sequence similarity 168, member A	AK047153|Fam168a|319604|family with sequence similarity 168, member A	AK048559|Fam168a|319604|family with sequence similarity 168, member A	AK051453|Fam168a|319604|family with sequence similarity 168, member A	AK084931|Fam168a|319604|family with sequence similarity 168, member A	AK137424|Fam168a|319604|family with sequence similarity 168, member A
mm9_v1_chr3_+_95733163_95733182	7.53439	AACACUG	AK172146|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	NM_023210|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm9_v1_chr10_-_70062025_70062087	7.52	AACACUG	AK032166|Phyhipl|70911|phytanoyl-CoA hydroxylase interacting protein-like	AK083011|Phyhipl|70911|phytanoyl-CoA hydroxylase interacting protein-like	NM_178621|Phyhipl|70911|phytanoyl-CoA hydroxylase interacting protein-like
mm9_v1_chr10_-_70055559_70055571	7.19532	AACACUG	NM_001162846|Phyhipl|70911|phytanoyl-CoA hydroxylase interacting protein-like	AK014946|Phyhipl|70911|phytanoyl-CoA hydroxylase interacting protein-like
mm9_v1_chr15_+_99984826_99984839	7.16814	AACACUG	AK030064|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	NM_172819|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	BC137857|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	BC137858|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm9_v1_chr2_-_115890747_115890848	7.10983	AACACUG	U68383|Meis2|17536|Meis homeobox 2	U68384|Meis2|17536|Meis homeobox 2	AJ000504|Meis2|17536|Meis homeobox 2	AJ000505|Meis2|17536|Meis homeobox 2	AJ000506|Meis2|17536|Meis homeobox 2	AJ000507|Meis2|17536|Meis homeobox 2	AK146633|Meis2|17536|Meis homeobox 2	NM_001136072|Meis2|17536|Meis homeobox 2	NM_001159567|Meis2|17536|Meis homeobox 2	NM_001159568|Meis2|17536|Meis homeobox 2	NM_010825|Meis2|17536|Meis homeobox 2	BC017375|Meis2|17536|Meis homeobox 2
mm9_v1_chr5_+_151476361_151476427	7.05514	AACACUG	AY102267|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)	NM_175310|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
mm9_v1_chr9_+_56266618_56266679	7.01898	AACACUG	AK088542|Hmg20a|66867|high mobility group 20A	AK032790|Hmg20a|66867|high mobility group 20A	AK039222|Hmg20a|66867|high mobility group 20A	AK004596|Hmg20a|66867|high mobility group 20A	AK086346|Hmg20a|66867|high mobility group 20A	AK154075|Hmg20a|66867|high mobility group 20A	BC013804|Hmg20a|66867|high mobility group 20A	DQ182735|Hmg20a|66867|high mobility group 20A	NM_025812|Hmg20a|66867|high mobility group 20A	AL355705|Hmg20a|66867|high mobility group 20A
mm9_v1_chr2_-_115890247_115890356	6.86396	AACACUG	AK158513|Meis2|17536|Meis homeobox 2	AK158839|Meis2|17536|Meis homeobox 2	NM_001159569|Meis2|17536|Meis homeobox 2	NM_001159570|Meis2|17536|Meis homeobox 2
mm9_v1_chr2_+_48805027_48805131	6.8273	AACACUG	NM_029924|Mbd5|109241|methyl-CpG binding domain protein 5	AK155574|Mbd5|109241|methyl-CpG binding domain protein 5
mm9_v1_chr6_-_58857000_58857134	6.67345	AACACUG	AB041556|Nap1l5|58243|nucleosome assembly protein 1-like 5	BC046332|Nap1l5|58243|nucleosome assembly protein 1-like 5	NM_021432|Nap1l5|58243|nucleosome assembly protein 1-like 5
mm9_v1_chr4_-_91038729_91038745	6.66865	AACACUG	U29088|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_010486|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207686|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr3_-_146444377_146444386	6.65171	AACACUG	AK150122|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK150134|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	NM_001164200|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr6_+_5675638_5675910	6.63566	AACACUG	AK158589|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	NM_001191023|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	NM_001191025|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	NM_001191026|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	NM_001191027|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	NM_010063|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	AF063229|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	AF063230|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	GU992206|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	GU992207|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	BC051992|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1
mm9_v1_chr5_+_19413335_19413335	6.47042	AACACUG	AK147530|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_001170745|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_015823|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chr15_+_91958558_91958558	6.46212	AACACUG	NM_007727|Cntn1|12805|contactin 1
mm9_v1_chr5_-_24348170_24348237	6.45807	AACACUG	AY197373|Rheb|19744|Ras homolog enriched in brain	NM_053075|Rheb|19744|Ras homolog enriched in brain	BC012273|Rheb|19744|Ras homolog enriched in brain	AK151213|Rheb|19744|Ras homolog enriched in brain	AB039919|Rheb|19744|Ras homolog enriched in brain
mm9_v1_chr15_+_91881593_91881615	6.35261	AACACUG	AK138969|Cntn1|12805|contactin 1	NM_001159648|Cntn1|12805|contactin 1
mm9_v1_chr19_+_28909559_28909655	6.34716	AACACUG	AK018188|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK045632|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK051428|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK083097|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	BC065099|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	BC064797|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	D43797|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	NM_009199|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	U73521|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
mm9_v1_chr10_-_62342761_62342761	6.31487	AACACUG	GU079948|Tet1|52463|tet oncogene 1	NM_027384|Tet1|52463|tet oncogene 1
mm9_v1_chr6_+_134932018_134932018	6.26011	AACACUG	NM_001109914|Apold1|381823|apolipoprotein L domain containing 1
mm9_v1_chr9_+_59598963_59599005	6.24807	AACACUG	NM_173018|Myo9a|270163|myosin IXa	AK048681|Myo9a|270163|myosin IXa
mm9_v1_chr4_-_75779379_75779379	6.24307	AACACUG	AF326559|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	AF326560|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	NM_001014288|Ptprd|19266|protein tyrosine phosphatase, receptor type, D
mm9_v1_chr4_-_91066674_91066674	6.19554	AACACUG	BC049125|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	BC058393|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207685|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr10_+_4424140_4424212	6.19404	AACACUG	AK030492|Rgs17|56533|regulator of G-protein signaling 17	NM_001161822|Rgs17|56533|regulator of G-protein signaling 17	NM_019958|Rgs17|56533|regulator of G-protein signaling 17	AK018279|Rgs17|56533|regulator of G-protein signaling 17	AK045770|Rgs17|56533|regulator of G-protein signaling 17	AK046009|Rgs17|56533|regulator of G-protein signaling 17	AK078745|Rgs17|56533|regulator of G-protein signaling 17	AK163188|Rgs17|56533|regulator of G-protein signaling 17	AF191555|Rgs17|56533|regulator of G-protein signaling 17	BC064782|Rgs17|56533|regulator of G-protein signaling 17
mm9_v1_chrX_-_9793578_9793578	6.19183	AACACUG	AK138977|Rpgr|19893|retinitis pigmentosa GTPase regulator	NM_001177952|Rpgr|19893|retinitis pigmentosa GTPase regulator
mm9_v1_chr4_-_91042997_91043190	6.09126	AACACUG	AK149201|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	AK141919|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_001177883|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr7_-_82454147_82454194	6.06132	AACACUG	BC079568|Sv2b|64176|synaptic vesicle glycoprotein 2 b	NM_153579|Sv2b|64176|synaptic vesicle glycoprotein 2 b
mm9_v1_chr7_-_82453216_82453273	5.92187	AACACUG	AK147261|Sv2b|64176|synaptic vesicle glycoprotein 2 b	NM_001109753|Sv2b|64176|synaptic vesicle glycoprotein 2 b
mm9_v1_chr5_-_138125817_138125859	5.85978	AACACUG	BC046788|Agfg2|231801|ArfGAP with FG repeats 2	NM_178162|Agfg2|231801|ArfGAP with FG repeats 2
mm9_v1_chr2_+_4480799_4480871	5.85654	AACACUG	AK077327|Frmd4a|209630|FERM domain containing 4A	NM_001177844|Frmd4a|209630|FERM domain containing 4A	AK148414|Frmd4a|209630|FERM domain containing 4A	AK029073|Frmd4a|209630|FERM domain containing 4A	AK171532|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr17_+_86567003_86567165	5.79391	AACACUG	AK082438|Prkce|18754|protein kinase C, epsilon	NM_011104|Prkce|18754|protein kinase C, epsilon	AK042994|Prkce|18754|protein kinase C, epsilon
mm9_v1_chr9_+_4383536_4383536	5.73814	AACACUG	AK180204|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene	BC014729|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene	NM_145609|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene
mm9_v1_chr13_-_105844882_105845009	5.63605	AACACUG	AK137417|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK036240|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK032138|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	NM_029879|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein
mm9_v1_chr1_-_69732373_69732533	5.61347	AACACUG	BC138606|Ikzf2|22779|IKAROS family zinc finger 2	BC138608|Ikzf2|22779|IKAROS family zinc finger 2	AK047925|Ikzf2|22779|IKAROS family zinc finger 2	AF044257|Ikzf2|22779|IKAROS family zinc finger 2	NM_011770|Ikzf2|22779|IKAROS family zinc finger 2
mm9_v1_chr10_-_9620837_9620892	5.59887	AACACUG	NM_001081344|Stxbp5|78808|syntaxin binding protein 5 (tomosyn)
mm9_v1_chr13_-_25029458_25029547	5.59501	AACACUG	AK051603|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	BC138703|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK159485|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK166313|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK144030|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK052703|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	NM_172532|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1
mm9_v1_chr4_-_107973683_107973743	5.56642	AACACUG	AK166278|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK148335|Zyg11b|414872|zyg-ll homolog B (C. elegans)	NM_001033634|Zyg11b|414872|zyg-ll homolog B (C. elegans)
mm9_v1_chr6_+_22825464_22825502	5.54697	AACACUG	AK081698|Ptprz1|19283|protein tyrosine phosphatase, receptor type Z, polypeptide 1	NM_001081306|Ptprz1|19283|protein tyrosine phosphatase, receptor type Z, polypeptide 1
mm9_v1_chr9_-_113935832_113935880	5.52982	AACACUG	AK013142|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK089994|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145665|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145998|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK045742|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC096582|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK141177|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK163472|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK044693|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK039010|Fbxl2|72179|F-box and leucine-rich repeat protein 2	NM_178624|Fbxl2|72179|F-box and leucine-rich repeat protein 2
mm9_v1_chr15_+_99869071_99869185	5.49259	AACACUG	NM_001159361|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	AK147562|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm9_v1_chr5_-_124778459_124778459	5.48402	AACACUG	NM_001081323|Mphosph9|269702|M-phase phosphoprotein 9
mm9_v1_chr16_-_44139087_44139164	5.45332	AACACUG	AK140873|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	BC038392|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK150742|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK166857|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK149833|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK153403|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK154869|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK160792|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK170721|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	NM_007508|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A
mm9_v1_chr10_-_114238419_114238425	5.38524	AACACUG	BC032288|Trhde|237553|TRH-degrading enzyme	AK085724|Trhde|237553|TRH-degrading enzyme	NM_146241|Trhde|237553|TRH-degrading enzyme
mm9_v1_chr12_+_30219769_30219800	5.38153	AACACUG	AK036205|Myt1l|17933|myelin transcription factor 1-like	NM_001093776|Myt1l|17933|myelin transcription factor 1-like	BC079651|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr12_+_30213224_30213265	5.25192	AACACUG	AK012660|Myt1l|17933|myelin transcription factor 1-like	AK139366|Myt1l|17933|myelin transcription factor 1-like	NM_001093775|Myt1l|17933|myelin transcription factor 1-like	NM_001093778|Myt1l|17933|myelin transcription factor 1-like	NM_008666|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr3_-_40886957_40886982	5.24929	AACACUG	NM_027558|Pgrmc2|70804|progesterone receptor membrane component 2
mm9_v1_chr1_-_166388431_166388540	5.18591	AACACUG	AK010677|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	NM_009721|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr14_-_94287950_94288026	5.09683	AACACUG	NM_001081377|Pcdh9|211712|protocadherin 9	BC157952|Pcdh9|211712|protocadherin 9	BC172098|Pcdh9|211712|protocadherin 9	BC158114|Pcdh9|211712|protocadherin 9	BC158117|Pcdh9|211712|protocadherin 9
mm9_v1_chr14_+_28435613_28435695	5.0669	AACACUG	AK147213|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	BC056760|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	NM_177814|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	AK032385|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2
mm9_v1_chr10_+_111708176_111708178	5.03608	AACACUG	AK045425|Kcnc2|268345|potassium voltage gated channel, Shaw-related subfamily, member 2	BC116289|Kcnc2|268345|potassium voltage gated channel, Shaw-related subfamily, member 2	BC116290|Kcnc2|268345|potassium voltage gated channel, Shaw-related subfamily, member 2	NM_001025581|Kcnc2|268345|potassium voltage gated channel, Shaw-related subfamily, member 2
mm9_v1_chr15_+_91991704_91991862	5.02921	AACACUG	NM_001159647|Cntn1|12805|contactin 1	BC066864|Cntn1|12805|contactin 1
mm9_v1_chr2_+_29821079_29821243	5.00422	AACACUG	NM_001076554|Spna2|20740|spectrin alpha 2	NM_001177667|Spna2|20740|spectrin alpha 2	NM_001177668|Spna2|20740|spectrin alpha 2	AK037683|Spna2|20740|spectrin alpha 2	AK132224|Spna2|20740|spectrin alpha 2	AK147317|Spna2|20740|spectrin alpha 2	AK085063|Spna2|20740|spectrin alpha 2	AK141149|Spna2|20740|spectrin alpha 2	BC049351|Spna2|20740|spectrin alpha 2	BC150941|Spna2|20740|spectrin alpha 2	BC158015|Spna2|20740|spectrin alpha 2	BC172095|Spna2|20740|spectrin alpha 2
mm9_v1_chr2_+_76244578_76244594	5.00084	AACACUG	AK044411|Osbpl6|99031|oxysterol binding protein-like 6	NM_145525|Osbpl6|99031|oxysterol binding protein-like 6
mm9_v1_chrX_-_119510890_119511030	4.99835	AACACUG	BC027045|Nap1l3|54561|nucleosome assembly protein 1-like 3	AK078521|Nap1l3|54561|nucleosome assembly protein 1-like 3	BC020176|Nap1l3|54561|nucleosome assembly protein 1-like 3	NM_138742|Nap1l3|54561|nucleosome assembly protein 1-like 3	AB010711|Nap1l3|54561|nucleosome assembly protein 1-like 3
mm9_v1_chr3_-_38383688_38383798	4.91676	AACACUG	AK129484|Ankrd50|99696|ankyrin repeat domain 50	NM_001167883|Ankrd50|99696|ankyrin repeat domain 50
mm9_v1_chrX_-_154036606_154036649	4.87975	AACACUG	AK148325|Mbtps2|270669|membrane-bound transcription factor peptidase, site 2	NM_172307|Mbtps2|270669|membrane-bound transcription factor peptidase, site 2
mm9_v1_chr4_+_117507819_117507873	4.85454	AACACUG	NM_008135|Slc6a9|14664|solute carrier family 6 (neurotransmitter transporter, glycine), member 9
mm9_v1_chr11_-_64976408_64976473	4.82099	AACACUG	BC056366|Arhgap44|216831|Rho GTPase activating protein 44	BC059911|Arhgap44|216831|Rho GTPase activating protein 44	NM_001099288|Arhgap44|216831|Rho GTPase activating protein 44	NM_175003|Arhgap44|216831|Rho GTPase activating protein 44
mm9_v1_chr3_-_107889507_107889627	4.8156	AACACUG	BC049119|Ampd2|109674|adenosine monophosphate deaminase 2	NM_028779|Ampd2|109674|adenosine monophosphate deaminase 2	AK169980|Ampd2|109674|adenosine monophosphate deaminase 2	AK004759|Ampd2|109674|adenosine monophosphate deaminase 2
mm9_v1_chr1_-_54983211_54983245	4.81009	AACACUG	AK038343|Ankrd44|329154|ankyrin repeat domain 44	NM_001081433|Ankrd44|329154|ankyrin repeat domain 44
mm9_v1_chr16_-_89974943_89974943	4.78639	AACACUG	AK147392|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	NM_001145886|Tiam1|21844|T-cell lymphoma invasion and metastasis 1
mm9_v1_chr13_-_96388378_96388387	4.76243	AACACUG	BC031516|F2r|14062|coagulation factor II (thrombin) receptor	NM_010169|F2r|14062|coagulation factor II (thrombin) receptor
mm9_v1_chr1_-_153937364_153937449	4.70583	AACACUG	AK144357|LOC545371|545371|hypothetical protein LOC545371	NM_197990|1700025G04Rik|69399|RIKEN cDNA 1700025G04 gene
mm9_v1_chr13_-_14615371_14615494	4.68811	AACACUG	AK051569|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK084246|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK086170|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK047678|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	NM_001081348|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK053694|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
mm9_v1_chr6_+_71657791_71657963	4.63093	AACACUG	AK035238|Reep1|52250|receptor accessory protein 1	AK045056|Reep1|52250|receptor accessory protein 1	NM_178608|Reep1|52250|receptor accessory protein 1	AK053158|Reep1|52250|receptor accessory protein 1	AK136916|Reep1|52250|receptor accessory protein 1	BC046826|Reep1|52250|receptor accessory protein 1	AY562229|Reep1|52250|receptor accessory protein 1
mm9_v1_chr6_+_8459595_8459595	4.61477	AACACUG	NM_133236|Glcci1|170772|glucocorticoid induced transcript 1
mm9_v1_chr3_+_67696141_67696177	4.58508	AACACUG	AK052136|Iqcj|208426|IQ motif containing J	NM_001113419|Iqcj-schip1|100505386|IQ motif containing J-schwannomin interacting protein 1 read-through transcript	NM_177585|Iqcj|208426|IQ motif containing J	BC107305|Iqcj|208426|IQ motif containing J	BC107306|Iqcj|208426|IQ motif containing J
mm9_v1_chr6_-_90666474_90666531	4.57362	AACACUG	NM_001134383|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr3_-_120966206_120966262	4.5725	AACACUG	BC040365|Tmem56|99887|transmembrane protein 56	NM_178936|Tmem56|99887|transmembrane protein 56	AK149544|Tmem56|99887|transmembrane protein 56
mm9_v1_chr11_+_97311458_97311517	4.5542	AACACUG	NM_021493|Arhgap23|58996|Rho GTPase activating protein 23
mm9_v1_chr16_-_78576898_78576912	4.47586	AACACUG	AK009258|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed	NM_025967|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed
mm9_v1_chr8_-_37676995_37677010	4.46051	AACACUG	AK162413|Dlc1|50768|deleted in liver cancer 1	NM_015802|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr1_+_66515003_66515020	4.39654	AACACUG	AK043914|Unc80|329178|unc-80 homolog (C. elegans)	FJ210934|Unc80|329178|unc-80 homolog (C. elegans)	NM_175510|Unc80|329178|unc-80 homolog (C. elegans)
mm9_v1_chr12_+_73637330_73637353	4.28436	AACACUG	AK076035|1810048J11Rik|67708|RIKEN cDNA 1810048J11 gene	NM_026327|1810048J11Rik|67708|RIKEN cDNA 1810048J11 gene
mm9_v1_chr19_+_10599708_10599823	4.27307	AACACUG	NM_001164272|Cpsf7|269061|cleavage and polyadenylation specific factor 7	NM_172302|Cpsf7|269061|cleavage and polyadenylation specific factor 7	AK044306|Cpsf7|269061|cleavage and polyadenylation specific factor 7	AK053375|Cpsf7|269061|cleavage and polyadenylation specific factor 7	AK088603|Cpsf7|269061|cleavage and polyadenylation specific factor 7	AK165330|Cpsf7|269061|cleavage and polyadenylation specific factor 7
mm9_v1_chr8_-_37796104_37796107	4.27139	AACACUG	AK147539|Dlc1|50768|deleted in liver cancer 1	NM_001194941|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr3_+_82161952_82161996	4.2032	AACACUG	AK138540|Mtap9|213582|microtubule-associated protein 9	AK038737|Mtap9|213582|microtubule-associated protein 9	NM_001081230|Mtap9|213582|microtubule-associated protein 9
mm9_v1_chr3_+_141128527_141128634	4.16548	AACACUG	NM_009472|Unc5c|22253|unc-5 homolog C (C. elegans)	U72634|Unc5c|22253|unc-5 homolog C (C. elegans)	BC115772|Unc5c|22253|unc-5 homolog C (C. elegans)	AK031655|Unc5c|22253|unc-5 homolog C (C. elegans)	AK034558|Unc5c|22253|unc-5 homolog C (C. elegans)	AK035038|Unc5c|22253|unc-5 homolog C (C. elegans)	AK045251|Unc5c|22253|unc-5 homolog C (C. elegans)	AK141181|Unc5c|22253|unc-5 homolog C (C. elegans)	AK142411|Unc5c|22253|unc-5 homolog C (C. elegans)	AK164239|Unc5c|22253|unc-5 homolog C (C. elegans)	AK142974|Unc5c|22253|unc-5 homolog C (C. elegans)
mm9_v1_chr2_+_30093236_30093288	4.16066	AACACUG	NM_177725|Lrrc8a|241296|leucine rich repeat containing 8A
mm9_v1_chr13_+_58909168_58909217	4.14212	AACACUG	NM_001025074|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2	X17647|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr15_-_79272478_79272599	4.13155	AACACUG	NM_013767|Csnk1e|27373|casein kinase 1, epsilon
mm9_v1_chr2_+_106535757_106535757	4.10363	AACACUG	AK012553|Mpped2|77015|metallophosphoesterase domain containing 2	NM_029837|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr7_+_58877199_58877199	4.10115	AACACUG	NM_080853|Slc17a6|140919|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6
mm9_v1_chr18_-_67712374_67712430	4.05702	AACACUG	BC058669|Spire1|68166|spire homolog 1 (Drosophila)	NM_194355|Spire1|68166|spire homolog 1 (Drosophila)	BC094375|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chr1_-_171677653_171677778	4.05554	AACACUG	AB004315|Rgs4|19736|regulator of G-protein signaling 4	BC003882|Rgs4|19736|regulator of G-protein signaling 4	BC055293|Rgs4|19736|regulator of G-protein signaling 4	AK030536|Rgs4|19736|regulator of G-protein signaling 4	AK039134|Rgs4|19736|regulator of G-protein signaling 4	DQ346659|Rgs4|19736|regulator of G-protein signaling 4	DQ346660|Rgs4|19736|regulator of G-protein signaling 4	DQ346661|Rgs4|19736|regulator of G-protein signaling 4	NM_009062|Rgs4|19736|regulator of G-protein signaling 4
mm9_v1_chr1_-_52290058_52290076	4.05161	AACACUG	AK173039|Gls|14660|glutaminase	NM_001081081|Gls|14660|glutaminase	NM_001113383|Gls|14660|glutaminase
mm9_v1_chr18_-_67708826_67708826	4.03918	AACACUG	BC058320|Spire1|68166|spire homolog 1 (Drosophila)	NM_176832|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chr11_-_90252228_90252237	4.03437	AACACUG	NM_172563|Hlf|217082|hepatic leukemia factor
mm9_v1_chr7_-_112730004_112730048	3.98427	AACACUG	AK144340|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1	AK030748|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1	NM_009685|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1
mm9_v1_chr3_+_28162135_28162218	3.98118	AACACUG	BC050866|Tnik|665113|TRAF2 and NCK interacting kinase	BC050868|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163007|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163008|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163009|Tnik|665113|TRAF2 and NCK interacting kinase	NM_026910|Tnik|665113|TRAF2 and NCK interacting kinase	AK041777|Tnik|665113|TRAF2 and NCK interacting kinase	AK133568|Tnik|665113|TRAF2 and NCK interacting kinase	AK039113|Tnik|665113|TRAF2 and NCK interacting kinase
mm9_v1_chr17_+_73185961_73186089	3.97006	AACACUG	AK167998|Ypel5|383295|yippee-like 5 (Drosophila)	AK165943|Ypel5|383295|yippee-like 5 (Drosophila)	AK169241|Ypel5|383295|yippee-like 5 (Drosophila)	AK049096|Ypel5|383295|yippee-like 5 (Drosophila)	AK171010|Ypel5|383295|yippee-like 5 (Drosophila)	NM_027166|Ypel5|383295|yippee-like 5 (Drosophila)	AK046281|Ypel5|383295|yippee-like 5 (Drosophila)	AK049644|Ypel5|383295|yippee-like 5 (Drosophila)	AK169986|Ypel5|383295|yippee-like 5 (Drosophila)	AK137446|Ypel5|383295|yippee-like 5 (Drosophila)	AK010201|Ypel5|383295|yippee-like 5 (Drosophila)
mm9_v1_chrX_+_133357268_133357438	3.96395	AACACUG	AK160872|Plp1|18823|proteolipid protein (myelin) 1	AK134554|Plp1|18823|proteolipid protein (myelin) 1	M15442|Plp1|18823|proteolipid protein (myelin) 1	AK077564|Plp1|18823|proteolipid protein (myelin) 1	BC027010|Plp1|18823|proteolipid protein (myelin) 1	NM_011123|Plp1|18823|proteolipid protein (myelin) 1	AK192772|Plp1|18823|proteolipid protein (myelin) 1	AK203421|Plp1|18823|proteolipid protein (myelin) 1
mm9_v1_chr3_+_124023954_124024027	3.9477	AACACUG	NM_146140|Tram1l1|229801|translocation associated membrane protein 1-like 1	AK052946|Tram1l1|229801|translocation associated membrane protein 1-like 1	AK048118|Tram1l1|229801|translocation associated membrane protein 1-like 1	AK083053|Tram1l1|229801|translocation associated membrane protein 1-like 1	AK044115|Tram1l1|229801|translocation associated membrane protein 1-like 1	BC024829|Tram1l1|229801|translocation associated membrane protein 1-like 1	BC027120|Tram1l1|229801|translocation associated membrane protein 1-like 1
mm9_v1_chr18_+_10325174_10325177	3.93076	AACACUG	AK142556|Greb1l|381157|growth regulation by estrogen in breast cancer-like	NM_001083628|Greb1l|381157|growth regulation by estrogen in breast cancer-like
mm9_v1_chrX_+_38754480_38754557	3.92976	AACACUG	NM_016886|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	BC086678|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr2_+_4073908_4073934	3.88841	AACACUG	NM_172475|Frmd4a|209630|FERM domain containing 4A	AK034706|Frmd4a|209630|FERM domain containing 4A	BC058672|Frmd4a|209630|FERM domain containing 4A	AK163887|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr14_-_80171003_80171120	3.87794	AACACUG	AK140407|Pcdh8|18530|protocadherin 8	AF231125|Pcdh8|18530|protocadherin 8	BC052388|Pcdh8|18530|protocadherin 8	BC053008|Pcdh8|18530|protocadherin 8	AK048638|Pcdh8|18530|protocadherin 8	AK049982|Pcdh8|18530|protocadherin 8	NM_001042726|Pcdh8|18530|protocadherin 8	NM_021543|Pcdh8|18530|protocadherin 8
mm9_v1_chr3_-_84024766_84024812	3.86895	AACACUG	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr1_-_128389495_128389552	3.8407	AACACUG	BC066095|Nckap5|210356|NCK-associated protein 5	BC079551|Nckap5|210356|NCK-associated protein 5	NM_172484|Nckap5|210356|NCK-associated protein 5
mm9_v1_chr14_-_78936606_78936676	3.79566	AACACUG	NM_001164503|Akap11|219181|A kinase (PRKA) anchor protein 11
mm9_v1_chr4_-_76240202_76240202	3.79337	AACACUG	BC086654|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	NM_011211|Ptprd|19266|protein tyrosine phosphatase, receptor type, D
mm9_v1_chr19_+_53966720_53966720	3.78603	AACACUG	AK134366|Pdcd4|18569|programmed cell death 4	NM_011050|Pdcd4|18569|programmed cell death 4
mm9_v1_chr9_-_55785907_55785932	3.7637	AACACUG	AK031358|Scaper|244891|S phase cyclin A-associated protein in the ER	AK049497|Scaper|244891|S phase cyclin A-associated protein in the ER	NM_001081341|Scaper|244891|S phase cyclin A-associated protein in the ER	AK048755|Scaper|244891|S phase cyclin A-associated protein in the ER
mm9_v1_chr5_-_72049479_72049546	3.70222	AACACUG	AK141571|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK159299|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK013727|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	NM_010251|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4
mm9_v1_chr3_+_129235284_129235325	3.68031	AACACUG	AK087440|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AK029029|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	NM_130450|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	BC051041|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AY053453|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm9_v1_chr19_+_36908682_36908797	3.66923	AACACUG	NM_001163635|Tnks2|74493|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
mm9_v1_chr13_+_91600662_91600791	3.66583	AACACUG	BC002176|Ssbp2|66970|single-stranded DNA binding protein 2	NM_024186|Ssbp2|66970|single-stranded DNA binding protein 2	NM_024272|Ssbp2|66970|single-stranded DNA binding protein 2	AK133699|Ssbp2|66970|single-stranded DNA binding protein 2	AK051840|Ssbp2|66970|single-stranded DNA binding protein 2	AK010220|Ssbp2|66970|single-stranded DNA binding protein 2	AY037837|Ssbp2|66970|single-stranded DNA binding protein 2	AK005150|Ssbp2|66970|single-stranded DNA binding protein 2	AK013177|Ssbp2|66970|single-stranded DNA binding protein 2	AY167988|Ssbp2|66970|single-stranded DNA binding protein 2
mm9_v1_chr6_-_90760116_90760132	3.64041	AACACUG	NM_001134384|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr11_-_119409041_119409133	3.63308	AACACUG	BC139018|Nptx1|18164|neuronal pentraxin 1	BC139020|Nptx1|18164|neuronal pentraxin 1	BC093479|Nptx1|18164|neuronal pentraxin 1	NM_008730|Nptx1|18164|neuronal pentraxin 1
mm9_v1_chr1_+_168309297_168309436	3.63122	AACACUG	NM_030245|Tada1|27878|transcriptional adaptor 1	BC027337|Tada1|27878|transcriptional adaptor 1	AK151132|Tada1|27878|transcriptional adaptor 1
mm9_v1_chr3_-_146433544_146433656	3.58201	AACACUG	AK163585|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK148728|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	NM_001164199|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr4_-_94645735_94645794	3.57309	AACACUG	AK164103|Mysm1|320713|myb-like, SWIRM and MPN domains 1	AK081684|Mysm1|320713|myb-like, SWIRM and MPN domains 1	AK145221|Mysm1|320713|myb-like, SWIRM and MPN domains 1	AK166402|Mysm1|320713|myb-like, SWIRM and MPN domains 1	BC150946|Mysm1|320713|myb-like, SWIRM and MPN domains 1	BC151172|Mysm1|320713|myb-like, SWIRM and MPN domains 1	AK043802|Mysm1|320713|myb-like, SWIRM and MPN domains 1	NM_177239|Mysm1|320713|myb-like, SWIRM and MPN domains 1
mm9_v1_chr3_-_30868320_30868353	3.54756	AACACUG	BC132533|Phc3|241915|polyhomeotic-like 3 (Drosophila)	BC145123|Phc3|241915|polyhomeotic-like 3 (Drosophila)	BC145124|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AJ414610|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK037348|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK087339|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK166208|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK166296|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165954|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165955|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165956|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_153421|Phc3|241915|polyhomeotic-like 3 (Drosophila)
mm9_v1_chr12_+_45429857_45429887	3.48605	AACACUG	AK043838|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule	NM_001146031|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule	NM_176930|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule
mm9_v1_chr4_+_84851330_84851416	3.47469	AACACUG	AK044370|Sh3gl2|20404|SH3-domain GRB2-like 2	BC018385|Sh3gl2|20404|SH3-domain GRB2-like 2	NM_019535|Sh3gl2|20404|SH3-domain GRB2-like 2	AK043424|Sh3gl2|20404|SH3-domain GRB2-like 2	AK139337|Sh3gl2|20404|SH3-domain GRB2-like 2	U58886|Sh3gl2|20404|SH3-domain GRB2-like 2
mm9_v1_chr7_+_104728398_104728430	3.45667	AACACUG	AK134242|Rsf1|233532|remodeling and spacing factor 1	NM_001081267|Rsf1|233532|remodeling and spacing factor 1	AK138087|Rsf1|233532|remodeling and spacing factor 1	AK146675|Rsf1|233532|remodeling and spacing factor 1	BC085127|Rsf1|233532|remodeling and spacing factor 1	AK146154|Rsf1|233532|remodeling and spacing factor 1	AK032853|Rsf1|233532|remodeling and spacing factor 1
mm9_v1_chr7_-_135605026_135605189	3.4515	AACACUG	NM_009383|Tial1|21843|Tia1 cytotoxic granule-associated RNA binding protein-like 1	AK132677|Tial1|21843|Tia1 cytotoxic granule-associated RNA binding protein-like 1
mm9_v1_chr3_+_33699111_33699116	3.41369	AACACUG	AK031605|Ttc14|67120|tetratricopeptide repeat domain 14	AK134539|Ttc14|67120|tetratricopeptide repeat domain 14	NM_025978|Ttc14|67120|tetratricopeptide repeat domain 14	NM_027619|Ttc14|67120|tetratricopeptide repeat domain 14
mm9_v1_chr12_+_53800369_53800393	3.39855	AACACUG	AK147248|Akap6|238161|A kinase (PRKA) anchor protein 6	AK147371|Akap6|238161|A kinase (PRKA) anchor protein 6	NM_198111|Akap6|238161|A kinase (PRKA) anchor protein 6
mm9_v1_chr2_-_152240762_152240779	3.39544	AACACUG	BC055755|Zcchc3|67917|zinc finger, CCHC domain containing 3	NM_175126|Zcchc3|67917|zinc finger, CCHC domain containing 3
mm9_v1_chr6_-_23789259_23789331	3.39411	AACACUG	AK046596|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AK042634|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AB291949|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AK163203|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	NM_153163|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AB291948|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AB291950|Cadps2|320405|Ca2+-dependent activator protein for secretion 2
mm9_v1_chr2_+_106533615_106533705	3.36844	AACACUG	AK161666|Mpped2|77015|metallophosphoesterase domain containing 2	NM_001143683|Mpped2|77015|metallophosphoesterase domain containing 2	BC020182|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr15_-_33617572_33617639	3.34479	AACACUG	AK087510|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	AK173253|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	BC079547|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	NM_001085421|Tspyl5|239364|testis-specific protein, Y-encoded-like 5
mm9_v1_chr1_+_19202046_19202134	3.29035	AACACUG	AK032045|Tcfap2b|21419|transcription factor AP-2 beta	NM_001025305|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr13_-_19711409_19711707	3.27924	AACACUG	DQ914440|Epdr1|105298|ependymin related protein 1 (zebrafish)	AF353717|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK192851|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK160413|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK166252|Epdr1|105298|ependymin related protein 1 (zebrafish)	BC014708|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK034083|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK038733|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK046185|Epdr1|105298|ependymin related protein 1 (zebrafish)	NM_134065|Epdr1|105298|ependymin related protein 1 (zebrafish)
mm9_v1_chr17_+_26852581_26852657	3.25654	AACACUG	AK030092|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	NM_029870|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK044760|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK020796|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132423|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132454|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene
mm9_v1_chr15_-_63891810_63892112	3.25551	AACACUG	AK075613|Fam49b|223601|family with sequence similarity 49, member B	AK043641|Fam49b|223601|family with sequence similarity 49, member B	AK028062|Fam49b|223601|family with sequence similarity 49, member B	NM_144846|Fam49b|223601|family with sequence similarity 49, member B
mm9_v1_chr6_+_115881925_115881944	3.22043	AACACUG	AK044333|Rho|212541|rhodopsin	AK044412|Rho|212541|rhodopsin	BC094460|Rho|212541|rhodopsin	BC031766|Rho|212541|rhodopsin	BC013125|Rho|212541|rhodopsin	NM_145383|Rho|212541|rhodopsin
mm9_v1_chr7_-_149846916_149846939	3.20345	AACACUG	NM_001122736|Igf2|16002|insulin-like growth factor 2
mm9_v1_chr4_+_34011567_34011625	3.17761	AACACUG	BC075644|Cnr1|12801|cannabinoid receptor 1 (brain)	BC070447|Cnr1|12801|cannabinoid receptor 1 (brain)	NM_007726|Cnr1|12801|cannabinoid receptor 1 (brain)	AY522554|Cnr1|12801|cannabinoid receptor 1 (brain)
mm9_v1_chrX_-_42143327_42143373	3.16521	AACACUG	AK038557|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1	AK047360|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1	NM_001190718|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1	AK034472|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1	NM_178739|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1
mm9_v1_chr7_+_107376116_107376219	3.15275	AACACUG	NM_027629|Pgm2l1|70974|phosphoglucomutase 2-like 1	AK039189|Pgm2l1|70974|phosphoglucomutase 2-like 1	AK040513|Pgm2l1|70974|phosphoglucomutase 2-like 1	BC076571|Pgm2l1|70974|phosphoglucomutase 2-like 1
mm9_v1_chr6_+_21166108_21166108	3.14691	AACACUG	BC079667|Kcnd2|16508|potassium voltage-gated channel, Shal-related family, member 2	NM_019697|Kcnd2|16508|potassium voltage-gated channel, Shal-related family, member 2
mm9_v1_chr11_+_19824417_19824473	3.13525	AACACUG	AK153700|Spred2|114716|sprouty-related, EVH1 domain containing 2	AK036430|Spred2|114716|sprouty-related, EVH1 domain containing 2	NM_033523|Spred2|114716|sprouty-related, EVH1 domain containing 2	AK157817|Spred2|114716|sprouty-related, EVH1 domain containing 2
mm9_v1_chr9_+_37296867_37296905	3.11801	AACACUG	BC066002|BC024479|235184|cDNA sequence BC024479	NM_146222|BC024479|235184|cDNA sequence BC024479
mm9_v1_chr7_+_147020072_147020194	3.09055	AACACUG	NM_177469|Gpr123|52389|G protein-coupled receptor 123	AK082207|Gpr123|52389|G protein-coupled receptor 123
mm9_v1_chr18_+_57292743_57292743	3.0851	AACACUG	AK147238|Megf10|70417|multiple EGF-like-domains 10	NM_001001979|Megf10|70417|multiple EGF-like-domains 10
mm9_v1_chr7_+_127821093_127821157	3.05122	AACACUG	NM_001164580|BC030336|233812|cDNA sequence BC030336
mm9_v1_chr12_-_81861527_81861701	3.02609	AACACUG	AK147473|Gm1568|380768|predicted gene 1568	BC067044|Gm1568|380768|predicted gene 1568	NM_001008423|Gm1568|380768|predicted gene 1568
mm9_v1_chr19_+_56796861_56797043	3.02556	AACACUG	NM_007419|Adrb1|11554|adrenergic receptor, beta 1	AK018378|Adrb1|11554|adrenergic receptor, beta 1
mm9_v1_chr16_-_67621054_67621188	2.99497	AACACUG	AK046800|Cadm2|239857|cell adhesion molecule 2	AK163636|Cadm2|239857|cell adhesion molecule 2	AK038842|Cadm2|239857|cell adhesion molecule 2	AK043760|Cadm2|239857|cell adhesion molecule 2	AK165030|Cadm2|239857|cell adhesion molecule 2	NM_001145977|Cadm2|239857|cell adhesion molecule 2	NM_178721|Cadm2|239857|cell adhesion molecule 2
mm9_v1_chrX_-_131543723_131543772	2.98701	AACACUG	BC067022|Zmat1|215693|zinc finger, matrin type 1	NM_175446|Zmat1|215693|zinc finger, matrin type 1
mm9_v1_chr1_+_154802198_154802230	2.98439	AACACUG	BC089007|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2	NM_175460|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr7_-_36370556_36370600	2.97378	AACACUG	BC118006|Rgs9bp|243923|regulator of G-protein signalling 9 binding protein	AY229888|Rgs9bp|243923|regulator of G-protein signalling 9 binding protein	AK044285|Rgs9bp|243923|regulator of G-protein signalling 9 binding protein	NM_145840|Rgs9bp|243923|regulator of G-protein signalling 9 binding protein
mm9_v1_chr12_+_70994091_70994091	2.95957	AACACUG	NM_178628|Atl1|73991|atlastin GTPase 1
mm9_v1_chr1_-_174136874_174136913	2.95738	AACACUG	NM_011063|Pea15a|18611|phosphoprotein enriched in astrocytes 15A
mm9_v1_chr15_-_31460752_31460820	2.95043	AACACUG	AK132461|March6|223455|membrane-associated ring finger (C3HC4) 6	AK089827|March6|223455|membrane-associated ring finger (C3HC4) 6	NM_172606|March6|223455|membrane-associated ring finger (C3HC4) 6
mm9_v1_chr3_+_115711207_115711327	2.93775	AACACUG	NM_001163514|Extl2|58193|exostoses (multiple)-like 2	AF200973|Extl2|58193|exostoses (multiple)-like 2	AK019370|Extl2|58193|exostoses (multiple)-like 2
mm9_v1_chr2_+_4322020_4322021	2.91287	AACACUG	BC082808|Frmd4a|209630|FERM domain containing 4A	NM_001177843|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr17_+_6106829_6106853	2.9106	AACACUG	NM_001103181|Tulp4|68842|tubby like protein 4
mm9_v1_chr9_+_72510153_72510370	2.90714	AACACUG	D85414|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	NM_010890|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK088767|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK133838|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK144240|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK169582|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK088620|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	BC138813|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK050517|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK080349|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK160570|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK122203|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	BC080710|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4
mm9_v1_chr18_-_35374663_35374683	2.88722	AACACUG	AK122278|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK036155|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK044705|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK046774|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	NM_178005|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2
mm9_v1_chr18_+_33098694_33098843	2.88211	AACACUG	NM_009793|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	AK030219|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	BC070420|Camk4|12326|calcium/calmodulin-dependent protein kinase IV
mm9_v1_chr4_-_8166182_8166192	2.8791	AACACUG	AK004896|Car8|12319|carbonic anhydrase 8	AK004923|Car8|12319|carbonic anhydrase 8	NM_007592|Car8|12319|carbonic anhydrase 8
mm9_v1_chr11_+_115281434_115281480	2.87105	AACACUG	NM_183285|Kctd2|70382|potassium channel tetramerisation domain containing 2	AK009318|Kctd2|70382|potassium channel tetramerisation domain containing 2	AK046534|Kctd2|70382|potassium channel tetramerisation domain containing 2	BC095988|Kctd2|70382|potassium channel tetramerisation domain containing 2
mm9_v1_chr12_+_54349663_54349663	2.87049	AACACUG	AF173871|Npas3|27386|neuronal PAS domain protein 3	BC120885|Npas3|27386|neuronal PAS domain protein 3	BC148199|Npas3|27386|neuronal PAS domain protein 3	NM_013780|Npas3|27386|neuronal PAS domain protein 3
mm9_v1_chrX_-_149204003_149204188	2.8484	AACACUG	DQ358971|Shroom2|110380|shroom family member 2	NM_172441|Shroom2|110380|shroom family member 2	EF071946|Shroom2|110380|shroom family member 2
mm9_v1_chr19_-_29887442_29887463	2.82733	AACACUG	BC056759|Ranbp6|240614|RAN binding protein 6	AK044143|Ranbp6|240614|RAN binding protein 6	BC139395|Ranbp6|240614|RAN binding protein 6	BC139396|Ranbp6|240614|RAN binding protein 6	NM_177721|Ranbp6|240614|RAN binding protein 6
mm9_v1_chr3_+_115710360_115710449	2.78553	AACACUG	NM_001163515|Extl2|58193|exostoses (multiple)-like 2	NM_021388|Extl2|58193|exostoses (multiple)-like 2	AK159281|Extl2|58193|exostoses (multiple)-like 2	AK028677|Extl2|58193|exostoses (multiple)-like 2	AK161866|Extl2|58193|exostoses (multiple)-like 2	BC031438|Extl2|58193|exostoses (multiple)-like 2
mm9_v1_chr11_-_12364886_12365020	2.78439	AACACUG	AK147366|Cobl|12808|cordon-bleu	AK147633|Cobl|12808|cordon-bleu	NM_172496|Cobl|12808|cordon-bleu
mm9_v1_chr1_+_21208679_21208742	2.76482	AACACUG	BC034768|Tmem14a|75712|transmembrane protein 14A	BC060034|Tmem14a|75712|transmembrane protein 14A	NM_029398|Tmem14a|75712|transmembrane protein 14A	AK017734|Tmem14a|75712|transmembrane protein 14A
mm9_v1_chr7_-_13404178_13404219	2.76167	AACACUG	BC139021|Zfp329|67230|zinc finger protein 329	BC139023|Zfp329|67230|zinc finger protein 329	BC072665|Zfp329|67230|zinc finger protein 329	AK013271|Zfp329|67230|zinc finger protein 329	AK014562|Zfp329|67230|zinc finger protein 329	AK051535|Zfp329|67230|zinc finger protein 329	NM_026046|Zfp329|67230|zinc finger protein 329
mm9_v1_chr1_+_44608355_44608562	2.76151	AACACUG	BC032154|Gulp1|70676|GULP, engulfment adaptor PTB domain containing 1	AK036670|Gulp1|70676|GULP, engulfment adaptor PTB domain containing 1	NM_028450|Gulp1|70676|GULP, engulfment adaptor PTB domain containing 1	AK017798|Gulp1|70676|GULP, engulfment adaptor PTB domain containing 1	AK028490|Gulp1|70676|GULP, engulfment adaptor PTB domain containing 1
mm9_v1_chr8_+_93352723_93352742	2.76091	AACACUG	AK034446|Chd9|109151|chromodomain helicase DNA binding protein 9	NM_177224|Chd9|109151|chromodomain helicase DNA binding protein 9	AK039562|Chd9|109151|chromodomain helicase DNA binding protein 9	DQ127229|Chd9|109151|chromodomain helicase DNA binding protein 9
mm9_v1_chr11_+_105451296_105451348	2.75943	AACACUG	AK019982|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	NM_181071|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	AK051973|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm9_v1_chr13_+_74146852_74146948	2.75576	AACACUG	NM_182839|Tppp|72948|tubulin polymerization promoting protein	AK141543|Tppp|72948|tubulin polymerization promoting protein	BC054803|Tppp|72948|tubulin polymerization promoting protein
mm9_v1_chr17_+_44090139_44090183	2.74635	AACACUG	BC049096|Rcan2|53901|regulator of calcineurin 2	NM_030598|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr5_+_34338625_34338665	2.73985	AACACUG	AK147307|Nat8l|269642|N-acetyltransferase 8-like	NM_001001985|Nat8l|269642|N-acetyltransferase 8-like
mm9_v1_chr5_-_5694325_5694567	2.73937	AACACUG	BC043459|Steap2|74051|six transmembrane epithelial antigen of prostate 2	BC150881|Steap2|74051|six transmembrane epithelial antigen of prostate 2	BC150889|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK166162|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK052981|Steap2|74051|six transmembrane epithelial antigen of prostate 2	NM_028734|Steap2|74051|six transmembrane epithelial antigen of prostate 2
mm9_v1_chr17_+_43938789_43938843	2.73786	AACACUG	NM_207649|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr18_-_23197156_23197163	2.73671	AACACUG	BC056377|Nol4|319211|nucleolar protein 4	NM_001161483|Nol4|319211|nucleolar protein 4
mm9_v1_chr15_-_97597988_97598129	2.73271	AACACUG	AK142594|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	AK044566|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	AK169430|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	AK162003|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	BC020532|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	NM_001177810|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	NM_001177811|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	NM_144850|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3
mm9_v1_chr1_+_60466462_60466491	2.71507	AACACUG	NM_001198570|Abi2|329165|abl-interactor 2	NM_001198571|Abi2|329165|abl-interactor 2	NM_198127|Abi2|329165|abl-interactor 2
mm9_v1_chr15_-_8660729_8660806	2.71499	AACACUG	BC058711|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	NM_148938|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm9_v1_chr7_+_37483093_37483136	2.71457	AACACUG	AY063491|Tshz3|243931|teashirt zinc finger family member 3	NM_172298|Tshz3|243931|teashirt zinc finger family member 3
mm9_v1_chr11_-_94183188_94183309	2.68465	AACACUG	AK014362|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	BC009092|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	NM_026313|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	AK078090|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	AK151228|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	AK151839|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	AK019464|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)
mm9_v1_chr1_+_93437120_93437389	2.68461	AACACUG	AK153774|Asb1|65247|ankyrin repeat and SOCS box-containing 1	NM_001039126|Asb1|65247|ankyrin repeat and SOCS box-containing 1	BC034869|Asb1|65247|ankyrin repeat and SOCS box-containing 1	AK122456|Asb1|65247|ankyrin repeat and SOCS box-containing 1	AF155352|Asb1|65247|ankyrin repeat and SOCS box-containing 1
mm9_v1_chr19_-_57290515_57290521	2.67768	AACACUG	BC141083|Ablim1|226251|actin-binding LIM protein 1	AF404774|Ablim1|226251|actin-binding LIM protein 1	NM_178688|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr17_+_71553920_71554003	2.67222	AACACUG	AK165218|Lpin2|64898|lipin 2	AK050018|Lpin2|64898|lipin 2	NM_001164885|Lpin2|64898|lipin 2
mm9_v1_chr9_-_107134182_107134239	2.66894	AACACUG	AY145302|Dock3|208869|dedicator of cyto-kinesis 3	AK172930|Dock3|208869|dedicator of cyto-kinesis 3	NM_153413|Dock3|208869|dedicator of cyto-kinesis 3
mm9_v1_chr12_-_28027541_28027588	2.66268	AACACUG	AK146514|Sox11|20666|SRY-box containing gene 11	AF009414|Sox11|20666|SRY-box containing gene 11	BC078643|Sox11|20666|SRY-box containing gene 11	AK165693|Sox11|20666|SRY-box containing gene 11	AK165005|Sox11|20666|SRY-box containing gene 11	NM_009234|Sox11|20666|SRY-box containing gene 11
mm9_v1_chr8_+_11728104_11728202	2.66237	AACACUG	NM_001113517|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK129064|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK139156|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)
mm9_v1_chr12_+_83412335_83412335	2.65932	AACACUG	NM_172579|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1
mm9_v1_chr16_-_46010510_46010548	2.65785	AACACUG	NM_001134480|Plcxd2|433022|phosphatidylinositol-specific phospholipase C, X domain containing 2
mm9_v1_chr5_+_64040341_64040341	2.63895	AACACUG	AK033855|3110047P20Rik|319807|RIKEN cDNA 3110047P20 gene	NM_177006|3110047P20Rik|319807|RIKEN cDNA 3110047P20 gene
mm9_v1_chr7_+_6238181_6238231	2.63442	AACACUG	AY850275|Zfp667|384763|zinc finger protein 667	BC049673|Zfp667|384763|zinc finger protein 667	NM_001024928|Zfp667|384763|zinc finger protein 667	AK080616|Zfp667|384763|zinc finger protein 667	BC141152|Zfp667|384763|zinc finger protein 667	BC141153|Zfp667|384763|zinc finger protein 667	AK164056|Zfp667|384763|zinc finger protein 667
mm9_v1_chr12_-_51750204_51750242	2.62796	AACACUG	NM_008858|Prkd1|18760|protein kinase D1
mm9_v1_chr5_-_5694033_5694105	2.62253	AACACUG	AK145468|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK166607|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK162343|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK165644|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK089927|Steap2|74051|six transmembrane epithelial antigen of prostate 2	NM_001103156|Steap2|74051|six transmembrane epithelial antigen of prostate 2	NM_001103157|Steap2|74051|six transmembrane epithelial antigen of prostate 2
mm9_v1_chr18_-_78320126_78320164	2.60789	AACACUG	NM_001171010|Slc14a1|108052|solute carrier family 14 (urea transporter), member 1	NM_028122|Slc14a1|108052|solute carrier family 14 (urea transporter), member 1
mm9_v1_chr3_-_107320881_107320937	2.60779	AACACUG	AK163113|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	AY155578|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	NM_172271|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17
mm9_v1_chr5_-_84846348_84846408	2.58689	AACACUG	BC057401|Epha5|13839|Eph receptor A5	AK133698|Epha5|13839|Eph receptor A5	AK034289|Epha5|13839|Eph receptor A5	AK049740|Epha5|13839|Eph receptor A5	NM_007937|Epha5|13839|Eph receptor A5
mm9_v1_chr3_+_88769733_88769733	2.58685	AACACUG	NM_138679|Ash1l|192195|ash1 (absent, small, or homeotic)-like (Drosophila)
mm9_v1_chr1_-_25886551_25886551	2.58276	AACACUG	BC099951|Bai3|210933|brain-specific angiogenesis inhibitor 3	NM_175642|Bai3|210933|brain-specific angiogenesis inhibitor 3
mm9_v1_chr9_+_47338431_47338446	2.57443	AACACUG	AB052293|Cadm1|54725|cell adhesion molecule 1	AB377192|Cadm1|54725|cell adhesion molecule 1	AK053839|Cadm1|54725|cell adhesion molecule 1	NM_001025600|Cadm1|54725|cell adhesion molecule 1	NM_018770|Cadm1|54725|cell adhesion molecule 1	NM_207675|Cadm1|54725|cell adhesion molecule 1	NM_207676|Cadm1|54725|cell adhesion molecule 1	AF539424|Cadm1|54725|cell adhesion molecule 1	BC095986|Cadm1|54725|cell adhesion molecule 1	BC069937|Cadm1|54725|cell adhesion molecule 1	BC057125|Cadm1|54725|cell adhesion molecule 1
mm9_v1_chr1_-_4486443_4486496	2.56859	AACACUG	D49474|Sox17|20671|SRY-box containing gene 17	AK004781|Sox17|20671|SRY-box containing gene 17	NM_011441|Sox17|20671|SRY-box containing gene 17
mm9_v1_chr8_+_96561097_96561129	2.55866	AACACUG	AK029629|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	NM_001093757|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	NM_177767|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	AK156765|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1
mm9_v1_chr4_+_21858472_21858503	2.54623	AACACUG	AK144924|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	NM_175234|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK081616|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK082464|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK018081|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene
mm9_v1_chr19_-_57271875_57272120	2.53529	AACACUG	AF404775|Ablim1|226251|actin-binding LIM protein 1	AK143907|Ablim1|226251|actin-binding LIM protein 1	NM_001103177|Ablim1|226251|actin-binding LIM protein 1	AK122196|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr14_-_66211842_66211926	2.53137	AACACUG	NM_028811|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	AK012072|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	AK150058|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	BC057453|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	AK088457|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)
mm9_v1_chr3_-_32264572_32264614	2.5285	AACACUG	NM_009517|Zmat3|22401|zinc finger matrin type 3	BC023726|Zmat3|22401|zinc finger matrin type 3
mm9_v1_chr18_-_53904193_53904270	2.52567	AACACUG	AK044952|Cep120|225523|centrosomal protein 120	BC053439|Cep120|225523|centrosomal protein 120	NM_178686|Cep120|225523|centrosomal protein 120	AK089236|Cep120|225523|centrosomal protein 120	AK089242|Cep120|225523|centrosomal protein 120	AK044808|Cep120|225523|centrosomal protein 120	AK079319|Cep120|225523|centrosomal protein 120	AK047594|Cep120|225523|centrosomal protein 120	AK038916|Cep120|225523|centrosomal protein 120
mm9_v1_chr15_+_97942484_97942592	2.51928	AACACUG	D21868|Pfkm|18642|phosphofructokinase, muscle	NM_021514|Pfkm|18642|phosphofructokinase, muscle	BC005526|Pfkm|18642|phosphofructokinase, muscle	AF249894|Pfkm|18642|phosphofructokinase, muscle	D21865|Pfkm|18642|phosphofructokinase, muscle
mm9_v1_chr11_-_6344445_6344467	2.51912	AACACUG	NM_029938|H2afv|77605|H2A histone family, member V	AK155105|H2afv|77605|H2A histone family, member V
mm9_v1_chr5_+_74591336_74591350	2.51643	AACACUG	BC083068|Rasl11b|68939|RAS-like, family 11, member B	NM_026878|Rasl11b|68939|RAS-like, family 11, member B
mm9_v1_chr8_+_3393005_3393067	2.51074	AACACUG	AK041423|Arhgef18|102098|rho/rac guanine nucleotide exchange factor (GEF) 18	NM_133962|Arhgef18|102098|rho/rac guanine nucleotide exchange factor (GEF) 18	BC060639|Arhgef18|102098|rho/rac guanine nucleotide exchange factor (GEF) 18	AK147923|Arhgef18|102098|rho/rac guanine nucleotide exchange factor (GEF) 18
mm9_v1_chr14_-_50403002_50403057	2.49872	AACACUG	AK014402|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	BC023359|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK028178|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK032093|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	NM_026142|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK028180|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK049427|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK014563|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene
mm9_v1_chr5_-_147395979_147395979	2.48914	AACACUG	BC055746|Gpr12|14738|G-protein coupled receptor 12	NM_008151|Gpr12|14738|G-protein coupled receptor 12
mm9_v1_chr8_-_38001686_38001686	2.4812	AACACUG	HM008381|Dlc1|50768|deleted in liver cancer 1	NM_001194940|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr2_-_32702729_32702816	2.4782	AACACUG	NM_009295|Stxbp1|20910|syntaxin binding protein 1	NM_001113569|Stxbp1|20910|syntaxin binding protein 1
mm9_v1_chr7_+_17460662_17460665	2.46369	AACACUG	DQ832319|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)	NM_001081655|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm9_v1_chr2_+_134611879_134611910	2.45158	AACACUG	AK143153|Plcb1|18795|phospholipase C, beta 1	NM_001145830|Plcb1|18795|phospholipase C, beta 1	NM_019677|Plcb1|18795|phospholipase C, beta 1	AK040911|Plcb1|18795|phospholipase C, beta 1
mm9_v1_chr11_-_69694379_69694486	2.44586	AACACUG	AK170258|Kctd11|216858|potassium channel tetramerisation domain containing 11	BC052734|Kctd11|216858|potassium channel tetramerisation domain containing 11	BC063052|Kctd11|216858|potassium channel tetramerisation domain containing 11	AF465352|Kctd11|216858|potassium channel tetramerisation domain containing 11	AK161602|Kctd11|216858|potassium channel tetramerisation domain containing 11	NM_153143|Kctd11|216858|potassium channel tetramerisation domain containing 11
mm9_v1_chr14_-_17407701_17408109	2.44528	AACACUG	AK078471|Rarb|218772|retinoic acid receptor, beta	NM_011243|Rarb|218772|retinoic acid receptor, beta	S92180|Rarb|218772|retinoic acid receptor, beta	S56660|Rarb|218772|retinoic acid receptor, beta	AK054178|Rarb|218772|retinoic acid receptor, beta	BC076597|Rarb|218772|retinoic acid receptor, beta	X56573|Rarb|218772|retinoic acid receptor, beta
mm9_v1_chr11_-_4060222_4060295	2.44406	AACACUG	AK076934|Ccdc157|216516|coiled-coil domain containing 157	AK143216|Ccdc157|216516|coiled-coil domain containing 157	AK220409|Ccdc157|216516|coiled-coil domain containing 157	AK133165|Ccdc157|216516|coiled-coil domain containing 157	NM_001164620|Ccdc157|216516|coiled-coil domain containing 157	NM_177616|Ccdc157|216516|coiled-coil domain containing 157
mm9_v1_chr8_+_71612616_71612811	2.43403	AACACUG	AK151200|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	NM_007509|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK170110|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK169155|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK169270|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK151322|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK151586|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK152718|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK152766|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159133|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159153|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159701|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK160080|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159986|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159586|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK169420|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK160854|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK146499|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK153341|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK168852|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	BC046302|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	BC012497|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	Y12634|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	BC085300|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK166669|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK182828|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK205457|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK206476|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209216|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209288|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209472|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209631|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK212223|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK213950|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK215019|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK215298|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK216725|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK217254|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK220015|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK214894|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK185732|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK191995|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2
mm9_v1_chr18_+_23962468_23962588	2.43255	AACACUG	NM_153058|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK038562|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK140595|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK040767|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK045904|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK148954|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK046221|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC027056|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC035254|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC025804|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK050527|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK148480|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK046095|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK088734|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC028987|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK045493|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr4_-_102887390_102887488	2.42271	AACACUG	AK169775|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	AK220330|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	AK049462|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	AK052968|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	AK049180|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	BC115984|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	NM_177732|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
mm9_v1_chr10_+_92623587_92623703	2.40427	AACACUG	AK078325|Cdk17|237459|cyclin-dependent kinase 17	NM_146239|Cdk17|237459|cyclin-dependent kinase 17	BC064815|Cdk17|237459|cyclin-dependent kinase 17
mm9_v1_chr14_-_100548982_100549014	2.38815	AACACUG	AB221575|Klf12|16597|Kruppel-like factor 12	Y14295|Klf12|16597|Kruppel-like factor 12	BC067408|Klf12|16597|Kruppel-like factor 12	NM_010636|Klf12|16597|Kruppel-like factor 12
mm9_v1_chr13_-_92901406_92901450	2.37692	AACACUG	NM_009027|Rasgrf2|19418|RAS protein-specific guanine nucleotide-releasing factor 2	U67326|Rasgrf2|19418|RAS protein-specific guanine nucleotide-releasing factor 2
mm9_v1_chr10_+_20760625_20760625	2.36912	AACACUG	AK161335|Ahi1|52906|Abelson helper integration site 1	NM_001177776|Ahi1|52906|Abelson helper integration site 1
mm9_v1_chr1_+_93437656_93437656	2.36474	AACACUG	AK006515|Asb1|65247|ankyrin repeat and SOCS box-containing 1	BC049699|Asb1|65247|ankyrin repeat and SOCS box-containing 1	NM_023046|Asb1|65247|ankyrin repeat and SOCS box-containing 1
mm9_v1_chrX_+_100551808_100551914	2.36366	AACACUG	NM_009767|Chic1|12212|cysteine-rich hydrophobic domain 1	AK034427|Chic1|12212|cysteine-rich hydrophobic domain 1	AK135974|Chic1|12212|cysteine-rich hydrophobic domain 1	Y11896|Chic1|12212|cysteine-rich hydrophobic domain 1	BC132322|Chic1|12212|cysteine-rich hydrophobic domain 1	BC138730|Chic1|12212|cysteine-rich hydrophobic domain 1	AK013993|Chic1|12212|cysteine-rich hydrophobic domain 1
mm9_v1_chrX_-_35605626_35605657	2.3573	AACACUG	NM_172930|Fam70a|245386|family with sequence similarity 70, member A
mm9_v1_chr4_-_148681792_148681843	2.35657	AACACUG	AK036129|Kif1b|16561|kinesin family member 1B	NM_008441|Kif1b|16561|kinesin family member 1B	NM_207682|Kif1b|16561|kinesin family member 1B	AK134946|Kif1b|16561|kinesin family member 1B
mm9_v1_chr3_-_81949667_81949798	2.35342	AACACUG	BC057327|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK031305|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK028558|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK004815|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AF297082|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	NM_021896|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3
mm9_v1_chr15_-_103070227_103070257	2.32959	AACACUG	BC004707|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001076789|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr18_+_64414012_64414029	2.32174	AACACUG	AK161482|St8sia3|20451|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	NM_009182|St8sia3|20451|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	AK015874|St8sia3|20451|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
mm9_v1_chr5_+_137506122_137506164	2.29683	AACACUG	NM_001039385|Vgf|381677|VGF nerve growth factor inducible
mm9_v1_chr5_-_147396814_147396814	2.2922	AACACUG	AK140298|Gpr12|14738|G-protein coupled receptor 12	NM_001010941|Gpr12|14738|G-protein coupled receptor 12
mm9_v1_chr7_-_11080687_11080731	2.2841	AACACUG	BC050942|Zik1|22775|zinc finger protein interacting with K protein 1	BC067196|Zik1|22775|zinc finger protein interacting with K protein 1	AK159077|Zik1|22775|zinc finger protein interacting with K protein 1	AK146692|Zik1|22775|zinc finger protein interacting with K protein 1	U69133|Zik1|22775|zinc finger protein interacting with K protein 1	NM_009577|Zik1|22775|zinc finger protein interacting with K protein 1
mm9_v1_chr5_-_107125783_107125868	2.25409	AACACUG	AK053146|Zfp644|52397|zinc finger protein 644	NM_026856|Zfp644|52397|zinc finger protein 644
mm9_v1_chr7_-_88837850_88837850	2.24554	AACACUG	NM_001164087|Homer2|26557|homer homolog 2 (Drosophila)
mm9_v1_chr1_+_37356722_37356738	2.2451	AACACUG	AK162581|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	NM_030266|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I
mm9_v1_chr1_+_6204729_6204756	2.2446	AACACUG	AB050017|Rb1cc1|12421|RB1-inducible coiled-coil 1	AB070619|Rb1cc1|12421|RB1-inducible coiled-coil 1	NM_009826|Rb1cc1|12421|RB1-inducible coiled-coil 1	AK020027|Rb1cc1|12421|RB1-inducible coiled-coil 1
mm9_v1_chr15_-_98638348_98638375	2.2324	AACACUG	AK158894|Ddn|13199|dendrin	NM_001013741|Ddn|13199|dendrin
mm9_v1_chr18_-_70212948_70213022	2.22584	AACACUG	BC032928|Rab27b|80718|RAB27b, member RAS oncogene family	AB067775|Rab27b|80718|RAB27b, member RAS oncogene family	AF328893|Rab27b|80718|RAB27b, member RAS oncogene family	BC018443|Rab27b|80718|RAB27b, member RAS oncogene family	NM_030554|Rab27b|80718|RAB27b, member RAS oncogene family
mm9_v1_chr2_+_154262114_154262265	2.22187	AACACUG	AK148027|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_009823|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_172860|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK040403|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	DQ213025|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	BC064679|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK049206|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)
mm9_v1_chrX_-_130223380_130223542	2.21467	AACACUG	AK046726|Pcdh19|279653|protocadherin 19	NM_001105245|Pcdh19|279653|protocadherin 19	NM_001105246|Pcdh19|279653|protocadherin 19
mm9_v1_chr9_+_74918979_74919024	2.21246	AACACUG	AK032713|Myo5a|17918|myosin VA	NM_010864|Myo5a|17918|myosin VA
mm9_v1_chr14_+_121434765_121434823	2.20054	AACACUG	AK134958|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	NM_134082|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm9_v1_chr18_-_78338857_78338857	2.19718	AACACUG	AK041979|Slc14a1|108052|solute carrier family 14 (urea transporter), member 1	NM_001171011|Slc14a1|108052|solute carrier family 14 (urea transporter), member 1
mm9_v1_chr4_+_151573918_151573952	2.18793	AACACUG	AB088412|Acot7|70025|acyl-CoA thioesterase 7	NM_001146058|Acot7|70025|acyl-CoA thioesterase 7
mm9_v1_chr17_-_91492065_91492142	2.18443	AACACUG	BC079893|Nrxn1|18189|neurexin I	AK005349|Nrxn1|18189|neurexin I	AK139280|Nrxn1|18189|neurexin I	AK163484|Nrxn1|18189|neurexin I	AK037724|Nrxn1|18189|neurexin I	AB093249|Nrxn1|18189|neurexin I	NM_020252|Nrxn1|18189|neurexin I	NM_177284|Nrxn1|18189|neurexin I	AK137407|Nrxn1|18189|neurexin I
mm9_v1_chr9_+_123438903_123439004	2.17431	AACACUG	AK089174|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AK171080|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AK122390|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	EF437383|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AK161111|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	NM_030692|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AJ297526|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	BC117752|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	BC117753|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)
mm9_v1_chr3_-_126646303_126646303	2.16953	AACACUG	BC043123|Ank2|109676|ankyrin 2, brain	NM_001034168|Ank2|109676|ankyrin 2, brain
mm9_v1_chr1_-_138242666_138242682	2.15874	AACACUG	AK016014|Camsap1l1|67886|calmodulin regulated spectrin-associated protein 1-like 1	AK028542|Camsap1l1|67886|calmodulin regulated spectrin-associated protein 1-like 1	AK053092|Camsap1l1|67886|calmodulin regulated spectrin-associated protein 1-like 1	NM_001081360|Camsap1l1|67886|calmodulin regulated spectrin-associated protein 1-like 1
mm9_v1_chrX_-_9793824_9794045	2.15115	AACACUG	AJ238396|Rpgr|19893|retinitis pigmentosa GTPase regulator	AF044677|Rpgr|19893|retinitis pigmentosa GTPase regulator	BC012661|Rpgr|19893|retinitis pigmentosa GTPase regulator	AK136298|Rpgr|19893|retinitis pigmentosa GTPase regulator	AK017192|Rpgr|19893|retinitis pigmentosa GTPase regulator	AK081631|Rpgr|19893|retinitis pigmentosa GTPase regulator	AK038652|Rpgr|19893|retinitis pigmentosa GTPase regulator	NM_001177950|Rpgr|19893|retinitis pigmentosa GTPase regulator	NM_001177951|Rpgr|19893|retinitis pigmentosa GTPase regulator	NM_001177953|Rpgr|19893|retinitis pigmentosa GTPase regulator	NM_001177954|Rpgr|19893|retinitis pigmentosa GTPase regulator	NM_011285|Rpgr|19893|retinitis pigmentosa GTPase regulator	AK029864|Rpgr|19893|retinitis pigmentosa GTPase regulator
mm9_v1_chr5_+_67137054_67137078	2.1434	AACACUG	NM_001001980|Limch1|77569|LIM and calponin homology domains 1
mm9_v1_chr7_-_149843316_149843387	2.14299	AACACUG	M14951|Igf2|16002|insulin-like growth factor 2	BC058615|Igf2|16002|insulin-like growth factor 2	BC053489|Igf2|16002|insulin-like growth factor 2	NM_001122737|Igf2|16002|insulin-like growth factor 2
mm9_v1_chr7_-_7252221_7252267	2.13279	AACACUG	BC110668|Clcn4-2|12727|chloride channel 4-2	NM_011334|Clcn4-2|12727|chloride channel 4-2	BC089497|Clcn4-2|12727|chloride channel 4-2
mm9_v1_chrX_+_5624624_5624624	2.13072	AACACUG	AK048263|Nudt11|58242|nudix (nucleoside diphosphate linked moiety X)-type motif 11	NM_021431|Nudt11|58242|nudix (nucleoside diphosphate linked moiety X)-type motif 11
mm9_v1_chr19_-_28057437_28057437	2.12514	AACACUG	NM_001166414|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr9_+_25060152_25060278	2.12411	AACACUG	NM_009859|Sept7|235072|septin 7	BC058587|Sept7|235072|septin 7	AK141572|Sept7|235072|septin 7	AK147986|Sept7|235072|septin 7	AK088997|Sept7|235072|septin 7	AK144127|Sept7|235072|septin 7	AK220447|Sept7|235072|septin 7
mm9_v1_chr18_+_13130739_13130831	2.12128	AACACUG	D87973|Impact|16210|imprinted and ancient	NM_008378|Impact|16210|imprinted and ancient	AK138136|Impact|16210|imprinted and ancient	BC020524|Impact|16210|imprinted and ancient
mm9_v1_chr18_+_54021746_54021814	2.11996	AACACUG	AK049379|Csnk1g3|70425|casein kinase 1, gamma 3	NM_152809|Csnk1g3|70425|casein kinase 1, gamma 3	AK080491|Csnk1g3|70425|casein kinase 1, gamma 3
mm9_v1_chrX_+_102315680_102315778	2.11592	AACACUG	BC059039|Magee1|107528|melanoma antigen, family E, 1	NM_053201|Magee1|107528|melanoma antigen, family E, 1	AK030032|Magee1|107528|melanoma antigen, family E, 1	AK081378|Magee1|107528|melanoma antigen, family E, 1	AK051625|Magee1|107528|melanoma antigen, family E, 1
mm9_v1_chr9_-_121767026_121767117	2.10425	AACACUG	NM_019814|Higd1a|56295|HIG1 domain family, member 1A
mm9_v1_chr3_-_109946355_109946392	2.09575	AACACUG	BC079881|Ntng1|80883|netrin G1	NM_001163348|Ntng1|80883|netrin G1	NM_001163349|Ntng1|80883|netrin G1	NM_001163350|Ntng1|80883|netrin G1	NM_001163351|Ntng1|80883|netrin G1	NM_030699|Ntng1|80883|netrin G1	NM_133488|Ntng1|80883|netrin G1	AK134467|Ntng1|80883|netrin G1
mm9_v1_chr2_+_132088974_132089064	2.09219	AACACUG	AK050589|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	BC003852|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	AK147541|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	NM_138651|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	AK170888|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	AK036328|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	AK166001|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
mm9_v1_chr17_-_32925218_32925259	2.08899	AACACUG	AK029041|Zfp871|208292|zinc finger protein 871	NM_172458|Zfp871|208292|zinc finger protein 871
mm9_v1_chr2_+_177853679_177853679	2.07821	AACACUG	AK220554|Phactr3|74189|phosphatase and actin regulator 3	NM_001177789|Phactr3|74189|phosphatase and actin regulator 3	NM_001177790|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr13_+_41701584_41701584	2.07296	AACACUG	NM_001163572|Tmem170b|621976|transmembrane protein 170B
mm9_v1_chr5_+_148768875_148768913	2.07225	AACACUG	AK147457|Mtus2|77521|microtubule associated tumor suppressor candidate 2	NM_029920|Mtus2|77521|microtubule associated tumor suppressor candidate 2
mm9_v1_chr9_+_54547344_54547366	2.06804	AACACUG	AK046476|Dnaja4|58233|DnaJ (Hsp40) homolog, subfamily A, member 4	AK076175|Dnaja4|58233|DnaJ (Hsp40) homolog, subfamily A, member 4	AK141909|Dnaja4|58233|DnaJ (Hsp40) homolog, subfamily A, member 4	NM_021422|Dnaja4|58233|DnaJ (Hsp40) homolog, subfamily A, member 4
mm9_v1_chr16_-_34514112_34514198	2.05793	AACACUG	BC157950|Kalrn|545156|kalirin, RhoGEF kinase	BC172101|Kalrn|545156|kalirin, RhoGEF kinase	NM_001164268|Kalrn|545156|kalirin, RhoGEF kinase	NM_177357|Kalrn|545156|kalirin, RhoGEF kinase	AK147314|Kalrn|545156|kalirin, RhoGEF kinase	AK147518|Kalrn|545156|kalirin, RhoGEF kinase
mm9_v1_chr2_-_37286367_37286438	2.05056	AACACUG	BC032933|Zbtb6|241322|zinc finger and BTB domain containing 6	AK044125|Zbtb6|241322|zinc finger and BTB domain containing 6	AK050827|Zbtb6|241322|zinc finger and BTB domain containing 6	NM_146253|Zbtb6|241322|zinc finger and BTB domain containing 6
mm9_v1_chr12_+_75098739_75098790	2.05015	AACACUG	AK137129|Syt16|238266|synaptotagmin XVI	AK032606|Syt16|238266|synaptotagmin XVI	NM_172804|Syt16|238266|synaptotagmin XVI
mm9_v1_chr6_+_115084919_115085009	2.04774	AACACUG	AF096867|Syn2|20965|synapsin II	NM_001111015|Syn2|20965|synapsin II	NM_013681|Syn2|20965|synapsin II	BC053427|Syn2|20965|synapsin II
mm9_v1_chr6_+_29298117_29298193	2.04569	AACACUG	AK163674|Calu|12321|calumenin	NM_007594|Calu|12321|calumenin	NM_184053|Calu|12321|calumenin	AK035600|Calu|12321|calumenin	BC051423|Calu|12321|calumenin	AK032402|Calu|12321|calumenin	AK147756|Calu|12321|calumenin	AK160795|Calu|12321|calumenin	AK161807|Calu|12321|calumenin	AK166705|Calu|12321|calumenin	AK148178|Calu|12321|calumenin	AY225334|Calu|12321|calumenin	U81829|Calu|12321|calumenin	AK135295|Calu|12321|calumenin
mm9_v1_chr6_+_108610606_108610702	2.04474	AACACUG	AK048242|Bhlhe40|20893|basic helix-loop-helix family, member e40	NM_011498|Bhlhe40|20893|basic helix-loop-helix family, member e40	AK154935|Bhlhe40|20893|basic helix-loop-helix family, member e40	AK090032|Bhlhe40|20893|basic helix-loop-helix family, member e40	BC010720|Bhlhe40|20893|basic helix-loop-helix family, member e40	AF010305|Bhlhe40|20893|basic helix-loop-helix family, member e40	AF364051|Bhlhe40|20893|basic helix-loop-helix family, member e40
mm9_v1_chr3_+_89635281_89635319	2.04251	AACACUG	AK034662|She|214547|src homology 2 domain-containing transforming protein E	AK157580|She|214547|src homology 2 domain-containing transforming protein E	NM_172530|She|214547|src homology 2 domain-containing transforming protein E	BC109362|She|214547|src homology 2 domain-containing transforming protein E	BC109363|She|214547|src homology 2 domain-containing transforming protein E
mm9_v1_chr10_-_18463500_18463563	2.03286	AACACUG	AK165602|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK148343|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK147963|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK147679|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	NM_001033258|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed
mm9_v1_chr7_-_88851798_88851810	2.02485	AACACUG	AK163423|Homer2|26557|homer homolog 2 (Drosophila)	NM_001164086|Homer2|26557|homer homolog 2 (Drosophila)	NM_011983|Homer2|26557|homer homolog 2 (Drosophila)
mm9_v1_chr18_+_13165498_13165545	2.02296	AACACUG	AF358859|Hrh4|225192|histamine receptor H4	NM_153087|Hrh4|225192|histamine receptor H4	BC111862|Hrh4|225192|histamine receptor H4	EU660535|Hrh4|225192|histamine receptor H4	EU660534|Hrh4|225192|histamine receptor H4
mm9_v1_chr9_-_104165221_104165274	2.02195	AACACUG	AK165345|Dnajc13|235567|DnaJ (Hsp40) homolog, subfamily C, member 13	NM_001163026|Dnajc13|235567|DnaJ (Hsp40) homolog, subfamily C, member 13	AK083408|Dnajc13|235567|DnaJ (Hsp40) homolog, subfamily C, member 13	AK147911|Dnajc13|235567|DnaJ (Hsp40) homolog, subfamily C, member 13
mm9_v1_chr3_+_75361454_75361503	2.01227	AACACUG	NM_009250|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	AK032152|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	AK133770|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	BC006776|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	AJ001700|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1
mm9_v1_chr7_-_149844708_149844708	2.00983	AACACUG	NM_010514|Igf2|16002|insulin-like growth factor 2
mm9_v1_chr18_-_70301202_70301243	2.00189	AACACUG	AK045312|Rab27b|80718|RAB27b, member RAS oncogene family	AK086987|Rab27b|80718|RAB27b, member RAS oncogene family	AK049854|Rab27b|80718|RAB27b, member RAS oncogene family	NM_001082553|Rab27b|80718|RAB27b, member RAS oncogene family
mm9_v1_chr11_+_58680717_58680792	2.00165	AACACUG	AK030099|2810021J22Rik|69944|RIKEN cDNA 2810021J22 gene	AK134479|2810021J22Rik|69944|RIKEN cDNA 2810021J22 gene	BC058081|2810021J22Rik|69944|RIKEN cDNA 2810021J22 gene	NM_172403|2810021J22Rik|69944|RIKEN cDNA 2810021J22 gene
mm9_v1_chr18_+_23910833_23910892	1.99733	AACACUG	AK158570|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	NM_001162942|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK168834|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr5_+_150480804_150480876	1.98529	AACACUG	NM_001081204|B3galtl|381694|beta 1,3-galactosyltransferase-like	AK089440|B3galtl|381694|beta 1,3-galactosyltransferase-like	AK145082|B3galtl|381694|beta 1,3-galactosyltransferase-like	AB253762|B3galtl|381694|beta 1,3-galactosyltransferase-like
mm9_v1_chr5_-_100407805_100407989	1.98013	AACACUG	U11273|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	AK135733|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	AK077409|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	BC049098|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_001077265|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_001077266|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_001077267|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_007516|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chrX_-_35929359_35929377	1.97719	AACACUG	BC004026|Cul4b|72584|cullin 4B	AK032701|Cul4b|72584|cullin 4B	AY330868|Cul4b|72584|cullin 4B	NM_001110142|Cul4b|72584|cullin 4B	NM_028288|Cul4b|72584|cullin 4B
mm9_v1_chr1_+_19198994_19199078	1.97659	AACACUG	AK017373|Tcfap2b|21419|transcription factor AP-2 beta	NM_009334|Tcfap2b|21419|transcription factor AP-2 beta	AK005128|Tcfap2b|21419|transcription factor AP-2 beta	AK028906|Tcfap2b|21419|transcription factor AP-2 beta	X78197|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr17_+_71533317_71533374	1.96958	AACACUG	AF286723|Lpin2|64898|lipin 2	NM_022882|Lpin2|64898|lipin 2
mm9_v1_chr4_+_151560168_151560314	1.96906	AACACUG	NM_001146057|Acot7|70025|acyl-CoA thioesterase 7	AB088411|Acot7|70025|acyl-CoA thioesterase 7
mm9_v1_chr18_+_37656644_37656807	1.96263	AACACUG	AK029163|Pcdhb19|93890|protocadherin beta 19	AK147520|Pcdhb19|93890|protocadherin beta 19	AK160654|Pcdhb19|93890|protocadherin beta 19	NM_053144|Pcdhb19|93890|protocadherin beta 19	AK046363|Pcdhb19|93890|protocadherin beta 19	BC141290|Pcdhb19|93890|protocadherin beta 19	BC141291|Pcdhb19|93890|protocadherin beta 19	AF326312|Pcdhb19|93890|protocadherin beta 19	AY013780|Pcdhb19|93890|protocadherin beta 19
mm9_v1_chr4_+_126698539_126698547	1.958	AACACUG	NM_023603|Sfpq|71514|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm9_v1_chr4_+_57867433_57867513	1.95786	AACACUG	NM_001035533|Akap2|11641|A kinase (PRKA) anchor protein 2	AK182017|Akap2|11641|A kinase (PRKA) anchor protein 2	AK209944|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr2_+_177910053_177910084	1.95315	AACACUG	AJ632221|Phactr3|74189|phosphatase and actin regulator 3	NM_001177791|Phactr3|74189|phosphatase and actin regulator 3	AK005136|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr3_-_137806320_137806370	1.95225	AACACUG	AK171129|C230076A16Rik|320496|RIKEN cDNA C230076A16 gene	AK039300|C230076A16Rik|320496|RIKEN cDNA C230076A16 gene	AK136278|Mttp|17777|microsomal triglyceride transfer protein	NM_001163457|Mttp|17777|microsomal triglyceride transfer protein
mm9_v1_chr2_+_177927788_177927833	1.94005	AACACUG	AJ632222|Phactr3|74189|phosphatase and actin regulator 3	NM_001007154|Phactr3|74189|phosphatase and actin regulator 3	AK038449|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr5_-_68238654_68238670	1.932	AACACUG	DQ503480|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK151709|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503479|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_001038999|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_009727|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503477|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr4_+_13711928_13711928	1.93122	AACACUG	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr15_+_32850477_32850629	1.91994	AACACUG	NM_008304|Sdc2|15529|syndecan 2	U00674|Sdc2|15529|syndecan 2	BC047144|Sdc2|15529|syndecan 2	AK011042|Sdc2|15529|syndecan 2
mm9_v1_chr5_+_111032523_111032540	1.89993	AACACUG	NM_001122639|Galnt9|231605|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	AK170381|Galnt9|231605|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	AK171529|Galnt9|231605|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9
mm9_v1_chr17_+_6138147_6138147	1.89848	AACACUG	AK173165|Tulp4|68842|tubby like protein 4	NM_054040|Tulp4|68842|tubby like protein 4
mm9_v1_chr1_+_34906775_34906890	1.89648	AACACUG	NM_145516|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK148653|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	BC057994|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK039771|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK166091|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AF189817|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK149868|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK150074|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK082118|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK179998|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2
mm9_v1_chr8_-_72644704_72644742	1.89592	AACACUG	X84727|Ncan|13004|neurocan	BC065118|Ncan|13004|neurocan	NM_007789|Ncan|13004|neurocan
mm9_v1_chr1_-_34899878_34899900	1.89307	AACACUG	AK220453|Fam168b|214469|family with sequence similarity 168, member B	NM_001160235|Fam168b|214469|family with sequence similarity 168, member B	NM_001160236|Fam168b|214469|family with sequence similarity 168, member B	NM_174997|Fam168b|214469|family with sequence similarity 168, member B
mm9_v1_chr2_+_177876635_177876639	1.89065	AACACUG	AK135144|Phactr3|74189|phosphatase and actin regulator 3	NM_028806|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr17_-_51965912_51965912	1.88951	AACACUG	NM_001163631|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr4_+_21774729_21774865	1.88794	AACACUG	NM_025669|Sfrs18|66625|serine/arginine-rich splicing factor 18	BC141031|Sfrs18|66625|serine/arginine-rich splicing factor 18
mm9_v1_chr2_-_134469806_134469920	1.88734	AACACUG	BC138168|Tmx4|52837|thioredoxin-related transmembrane protein 4	BC138169|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK040779|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK147465|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK129301|Tmx4|52837|thioredoxin-related transmembrane protein 4	BC054558|Tmx4|52837|thioredoxin-related transmembrane protein 4	NM_029148|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK015667|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK053897|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK030696|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK172572|Tmx4|52837|thioredoxin-related transmembrane protein 4
mm9_v1_chr5_-_29704889_29704943	1.88694	AACACUG	NM_020295|Lmbr1|56873|limb region 1
mm9_v1_chr4_-_120770603_120770864	1.88219	AACACUG	AY029194|Zmpste24|230709|zinc metallopeptidase, STE24 homolog (S. cerevisiae)	BC138578|Zmpste24|230709|zinc metallopeptidase, STE24 homolog (S. cerevisiae)	BC023740|Zmpste24|230709|zinc metallopeptidase, STE24 homolog (S. cerevisiae)	AK170946|Zmpste24|230709|zinc metallopeptidase, STE24 homolog (S. cerevisiae)	AJ487544|Zmpste24|230709|zinc metallopeptidase, STE24 homolog (S. cerevisiae)	AK083566|Zmpste24|230709|zinc metallopeptidase, STE24 homolog (S. cerevisiae)	NM_172700|Zmpste24|230709|zinc metallopeptidase, STE24 homolog (S. cerevisiae)
mm9_v1_chr10_+_110601745_110601988	1.88015	AACACUG	AK037158|Osbpl8|237542|oxysterol binding protein-like 8	AK050244|Osbpl8|237542|oxysterol binding protein-like 8	NM_001003717|Osbpl8|237542|oxysterol binding protein-like 8	NM_175489|Osbpl8|237542|oxysterol binding protein-like 8
mm9_v1_chr1_-_133141708_133141776	1.8764	AACACUG	AF053959|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK005059|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK155534|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK029321|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	BC089605|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	NM_018750|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5
mm9_v1_chr15_+_97938874_97939027	1.85476	AACACUG	NM_001163487|Pfkm|18642|phosphofructokinase, muscle	D21867|Pfkm|18642|phosphofructokinase, muscle	AK049773|Pfkm|18642|phosphofructokinase, muscle	AK002711|Pfkm|18642|phosphofructokinase, muscle
mm9_v1_chr7_-_28714448_28714480	1.84876	AACACUG	AK079686|1700049G17Rik|73430|RIKEN cDNA 1700049G17 gene	AK137340|1700049G17Rik|73430|RIKEN cDNA 1700049G17 gene	NM_028538|1700049G17Rik|73430|RIKEN cDNA 1700049G17 gene	AK160450|1700049G17Rik|73430|RIKEN cDNA 1700049G17 gene	BC069987|1700049G17Rik|73430|RIKEN cDNA 1700049G17 gene
mm9_v1_chr13_+_36059774_36059804	1.84078	AACACUG	NM_029628|Ppp1r3g|76487|protein phosphatase 1, regulatory (inhibitor) subunit 3G	AK079637|Ppp1r3g|76487|protein phosphatase 1, regulatory (inhibitor) subunit 3G
mm9_v1_chr2_-_168427037_168427156	1.83966	AACACUG	EU887581|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887587|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887593|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887599|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	AK083119|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887583|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887585|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887589|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887591|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887595|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887597|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887601|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887603|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	NM_001037178|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	AK044489|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2
mm9_v1_chr2_+_14310024_14310041	1.83681	AACACUG	NM_001012305|Slc39a12|277468|solute carrier family 39 (zinc transporter), member 12	AK134622|Slc39a12|277468|solute carrier family 39 (zinc transporter), member 12	BC089362|Slc39a12|277468|solute carrier family 39 (zinc transporter), member 12	BC113764|Slc39a12|277468|solute carrier family 39 (zinc transporter), member 12	BC113765|Slc39a12|277468|solute carrier family 39 (zinc transporter), member 12
mm9_v1_chr15_+_97923019_97923019	1.82603	AACACUG	NM_001163488|Pfkm|18642|phosphofructokinase, muscle
mm9_v1_chrX_+_8469478_8469488	1.82067	AACACUG	NM_175327|B630019K06Rik|102941|RIKEN cDNA B630019K06 gene
mm9_v1_chr8_-_96560811_96560953	1.81713	AACACUG	AK204985|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	BC090834|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK146419|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK160147|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK012308|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK020150|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK019433|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK147061|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	BC008270|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK011688|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	NM_026623|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21
mm9_v1_chr11_-_74403603_74403659	1.79212	AACACUG	NM_001015046|Rap1gap2|380711|RAP1 GTPase activating protein 2
mm9_v1_chr2_-_160738055_160738063	1.78706	AACACUG	BC054738|Emilin3|280635|elastin microfibril interfacer 3	BC057619|Emilin3|280635|elastin microfibril interfacer 3	NM_182840|Emilin3|280635|elastin microfibril interfacer 3
mm9_v1_chr3_-_51200423_51200468	1.78361	AACACUG	BC022740|4930583H14Rik|67749|RIKEN cDNA 4930583H14 gene	AK006339|4930583H14Rik|67749|RIKEN cDNA 4930583H14 gene	BC049556|4930583H14Rik|67749|RIKEN cDNA 4930583H14 gene	AK016342|4930583H14Rik|67749|RIKEN cDNA 4930583H14 gene	AF228502|4930583H14Rik|67749|RIKEN cDNA 4930583H14 gene	AK151401|4930583H14Rik|67749|RIKEN cDNA 4930583H14 gene	BC012511|4930583H14Rik|67749|RIKEN cDNA 4930583H14 gene	NM_026358|4930583H14Rik|67749|RIKEN cDNA 4930583H14 gene
mm9_v1_chr10_-_42894259_42894340	1.78293	AACACUG	BC059851|Sobp|109205|sine oculis-binding protein homolog (Drosophila)	NM_175407|Sobp|109205|sine oculis-binding protein homolog (Drosophila)
mm9_v1_chr1_-_128727208_128727208	1.76704	AACACUG	NM_001081756|Nckap5|210356|NCK-associated protein 5	NM_176957|Nckap5|210356|NCK-associated protein 5
mm9_v1_chr1_+_66221851_66221903	1.76551	AACACUG	AK166380|Mtap2|17756|microtubule-associated protein 2	BC052446|Mtap2|17756|microtubule-associated protein 2	NM_001039934|Mtap2|17756|microtubule-associated protein 2	NM_008632|Mtap2|17756|microtubule-associated protein 2	BC150945|Mtap2|17756|microtubule-associated protein 2
mm9_v1_chr8_-_49760037_49760043	1.76521	AACACUG	BC145284|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)	AB025412|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)	NM_001145937|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)	NM_011857|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)
mm9_v1_chr1_-_82583400_82583423	1.76387	AACACUG	AK164732|Col4a4|12829|collagen, type IV, alpha 4	NM_007735|Col4a4|12829|collagen, type IV, alpha 4
mm9_v1_chr11_-_3352243_3352377	1.76291	AACACUG	AK167455|Rnf185|193670|ring finger protein 185	AK077638|Rnf185|193670|ring finger protein 185	BC014812|Rnf185|193670|ring finger protein 185	AK149640|Rnf185|193670|ring finger protein 185	AK168904|Rnf185|193670|ring finger protein 185	AK053358|Rnf185|193670|ring finger protein 185	AK034108|Rnf185|193670|ring finger protein 185	NM_145355|Rnf185|193670|ring finger protein 185	AK052436|Rnf185|193670|ring finger protein 185
mm9_v1_chr9_-_26837634_26837702	1.75874	AACACUG	AK155578|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	AK171154|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	BC049180|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	AK031589|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	NM_178027|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)
mm9_v1_chr11_-_5662259_5662400	1.74714	AACACUG	BC066994|Urgcp|72046|upregulator of cell proliferation	AK035580|Urgcp|72046|upregulator of cell proliferation	AK041953|Urgcp|72046|upregulator of cell proliferation	NM_001077661|Urgcp|72046|upregulator of cell proliferation	AK037923|Urgcp|72046|upregulator of cell proliferation	AK053862|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr1_+_78654399_78654472	1.73647	AACACUG	AK161708|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_001001981|Utp14b|195434|UTP14, U3 small nucleolar ribonucleoprotein, homolog B (yeast)	NM_001033606|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_001136222|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_028817|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK012088|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK160839|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK166723|Acsl3|74205|acyl-CoA synthetase long-chain family member 3
mm9_v1_chr3_+_142193286_142193339	1.73632	AACACUG	NM_001083312|Gbp6|229900|guanylate binding protein 6	AK036666|Gbp6|229900|guanylate binding protein 6	AK087751|Gbp6|229900|guanylate binding protein 6	NM_145545|Gbp6|229900|guanylate binding protein 6	BC010229|Gbp6|229900|guanylate binding protein 6
mm9_v1_chrX_-_162948399_162948409	1.73091	AACACUG	AK140929|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing	BC067008|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing	NM_001007577|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing
mm9_v1_chr2_-_117168600_117168658	1.73056	AACACUG	BC057120|Rasgrp1|19419|RAS guanyl releasing protein 1	BC057341|Rasgrp1|19419|RAS guanyl releasing protein 1	NM_011246|Rasgrp1|19419|RAS guanyl releasing protein 1	AK134005|Rasgrp1|19419|RAS guanyl releasing protein 1	AK013548|Rasgrp1|19419|RAS guanyl releasing protein 1
mm9_v1_chr2_+_92755251_92755331	1.72943	AACACUG	AK044038|Syt13|80976|synaptotagmin XIII	AK082425|Syt13|80976|synaptotagmin XIII	AK083803|Syt13|80976|synaptotagmin XIII	NM_030725|Syt13|80976|synaptotagmin XIII	BC030907|Syt13|80976|synaptotagmin XIII	AK049840|Syt13|80976|synaptotagmin XIII	AB048947|Syt13|80976|synaptotagmin XIII
mm9_v1_chr16_+_92058498_92058582	1.7247	AACACUG	AK165590|Mrps6|121022|mitochondrial ribosomal protein S6	AB049943|Mrps6|121022|mitochondrial ribosomal protein S6	AY061856|Mrps6|121022|mitochondrial ribosomal protein S6	AK144718|Slc5a3|53881|solute carrier family 5 (inositol transporters), member 3	AK166374|Mrps6|121022|mitochondrial ribosomal protein S6	AK167304|Mrps6|121022|mitochondrial ribosomal protein S6	NM_017391|Slc5a3|53881|solute carrier family 5 (inositol transporters), member 3	AK167316|Mrps6|121022|mitochondrial ribosomal protein S6	BC027271|Mrps6|121022|mitochondrial ribosomal protein S6	NM_080456|Mrps6|121022|mitochondrial ribosomal protein S6
mm9_v1_chr9_-_42280256_42280323	1.71109	AACACUG	BC139386|Tbcel|272589|tubulin folding cofactor E-like	BC139387|Tbcel|272589|tubulin folding cofactor E-like	AK077017|Tbcel|272589|tubulin folding cofactor E-like	NM_173038|Tbcel|272589|tubulin folding cofactor E-like	AK084854|Tbcel|272589|tubulin folding cofactor E-like
mm9_v1_chr9_+_91263809_91263809	1.70097	AACACUG	AK046913|Zic4|22774|zinc finger protein of the cerebellum 4	NM_009576|Zic4|22774|zinc finger protein of the cerebellum 4
mm9_v1_chr10_-_75807976_75808035	1.7002	AACACUG	AK052899|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)	NM_001081419|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)	AK050040|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)
mm9_v1_chr5_-_122952228_122952237	1.69335	AACACUG	NM_001110140|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	NM_009722|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr12_+_83271002_83271165	1.6887	AACACUG	NM_001167983|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1	BC058681|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1	AK171876|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1
mm9_v1_chr3_+_128902822_128902860	1.67026	AACACUG	AB006321|Pitx2|18741|paired-like homeodomain transcription factor 2	NM_011098|Pitx2|18741|paired-like homeodomain transcription factor 2	NM_001042504|Pitx2|18741|paired-like homeodomain transcription factor 2	U80011|Pitx2|18741|paired-like homeodomain transcription factor 2	U80036|Pitx2|18741|paired-like homeodomain transcription factor 2	AF048723|Pitx2|18741|paired-like homeodomain transcription factor 2	U80010|Pitx2|18741|paired-like homeodomain transcription factor 2
mm9_v1_chr7_-_59261060_59261387	1.65918	AACACUG	AK005663|Svip|75744|small VCP/p97-interacting protein	AK029831|Svip|75744|small VCP/p97-interacting protein	BC100498|Svip|75744|small VCP/p97-interacting protein	BC049720|Svip|75744|small VCP/p97-interacting protein	AK133737|Svip|75744|small VCP/p97-interacting protein	AK018351|Svip|75744|small VCP/p97-interacting protein	AK158571|Svip|75744|small VCP/p97-interacting protein	NM_001160345|Svip|75744|small VCP/p97-interacting protein
mm9_v1_chr9_-_96531911_96531965	1.64724	AACACUG	AB056433|Rasa2|114713|RAS p21 protein activator 2	AK034434|Rasa2|114713|RAS p21 protein activator 2	NM_053268|Rasa2|114713|RAS p21 protein activator 2	AK154499|Rasa2|114713|RAS p21 protein activator 2	AK166654|Rasa2|114713|RAS p21 protein activator 2
mm9_v1_chr13_-_54150991_54151026	1.6436	AACACUG	AK044723|Drd1a|13488|dopamine receptor D1A	NM_010076|Drd1a|13488|dopamine receptor D1A
mm9_v1_chr9_+_35259660_35259661	1.6363	AACACUG	AF090866|Cdon|57810|cell adhesion molecule-related/down-regulated by oncogenes	NM_021339|Cdon|57810|cell adhesion molecule-related/down-regulated by oncogenes	BC109176|Cdon|57810|cell adhesion molecule-related/down-regulated by oncogenes
mm9_v1_chr1_-_58026858_58026927	1.63465	AACACUG	AK032658|Kctd18|51960|potassium channel tetramerisation domain containing 18	AK132699|Kctd18|51960|potassium channel tetramerisation domain containing 18	AK053098|Kctd18|51960|potassium channel tetramerisation domain containing 18	AK079700|Kctd18|51960|potassium channel tetramerisation domain containing 18	NM_001159864|Kctd18|51960|potassium channel tetramerisation domain containing 18	NM_001159865|Kctd18|51960|potassium channel tetramerisation domain containing 18	NM_030211|Kctd18|51960|potassium channel tetramerisation domain containing 18
mm9_v1_chr5_-_33196860_33196908	1.6277	AACACUG	AK134346|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene	NM_194340|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene
mm9_v1_chr2_-_118529608_118529698	1.6274	AACACUG	NM_001081971|Gm1337|383787|predicted gene 1337
mm9_v1_chr10_+_56097078_56097350	1.624	AACACUG	AY427554|Gja1|14609|gap junction protein, alpha 1	AY427555|Gja1|14609|gap junction protein, alpha 1	NM_010288|Gja1|14609|gap junction protein, alpha 1	M63801|Gja1|14609|gap junction protein, alpha 1	AK011459|Gja1|14609|gap junction protein, alpha 1	AK036979|Gja1|14609|gap junction protein, alpha 1	AK145692|Gja1|14609|gap junction protein, alpha 1	AK161997|Gja1|14609|gap junction protein, alpha 1	AK171955|Gja1|14609|gap junction protein, alpha 1	AY427560|Gja1|14609|gap junction protein, alpha 1	BC006894|Gja1|14609|gap junction protein, alpha 1	BC055375|Gja1|14609|gap junction protein, alpha 1	AK029291|Gja1|14609|gap junction protein, alpha 1	AK165986|Gja1|14609|gap junction protein, alpha 1	X61576|Gja1|14609|gap junction protein, alpha 1	AY427556|Gja1|14609|gap junction protein, alpha 1	AY427557|Gja1|14609|gap junction protein, alpha 1	AY427558|Gja1|14609|gap junction protein, alpha 1
mm9_v1_chr4_-_15076093_15076277	1.62307	AACACUG	AK039240|Necab1|69352|N-terminal EF-hand calcium binding protein 1	AK081951|Necab1|69352|N-terminal EF-hand calcium binding protein 1	AY278200|Necab1|69352|N-terminal EF-hand calcium binding protein 1	BC067055|Necab1|69352|N-terminal EF-hand calcium binding protein 1	NM_178617|Necab1|69352|N-terminal EF-hand calcium binding protein 1
mm9_v1_chr4_+_13670425_13670448	1.61689	AACACUG	AK142006|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_001111026|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr19_-_19185685_19185685	1.60478	AACACUG	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr3_+_90345082_90345194	1.58757	AACACUG	BC020031|S100a16|67860|S100 calcium binding protein A16	NM_026416|S100a16|67860|S100 calcium binding protein A16
mm9_v1_chr15_+_100766701_100766755	1.58115	AACACUG	NM_011323|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	U26707|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AF049617|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr17_-_51972514_51972614	1.58027	AACACUG	BC011132|Satb1|20230|special AT-rich sequence binding protein 1	NM_001163632|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr11_-_93829704_93829834	1.57837	AACACUG	NM_008704|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in
mm9_v1_chr1_+_52687548_52687638	1.57498	AACACUG	NM_001142647|Tmem194b|227094|transmembrane protein 194B	AK030361|Tmem194b|227094|transmembrane protein 194B	AK036693|Tmem194b|227094|transmembrane protein 194B	AK048484|Tmem194b|227094|transmembrane protein 194B	AK170577|Tmem194b|227094|transmembrane protein 194B	AK086801|Tmem194b|227094|transmembrane protein 194B
mm9_v1_chr5_+_110973321_110973404	1.57371	AACACUG	NM_198306|Galnt9|231605|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	AK032568|Galnt9|231605|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9
mm9_v1_chrX_+_104479684_104479684	1.56953	AACACUG	NM_001177782|Gpr174|213439|G protein-coupled receptor 174
mm9_v1_chr1_+_20880692_20880724	1.56165	AACACUG	AK147376|Paqr8|74229|progestin and adipoQ receptor family member VIII	BC059813|Paqr8|74229|progestin and adipoQ receptor family member VIII	NM_028829|Paqr8|74229|progestin and adipoQ receptor family member VIII
mm9_v1_chr10_-_129717244_129717295	1.56076	AACACUG	BC042639|Neurod4|11923|neurogenic differentiation 4	AK012183|Neurod4|11923|neurogenic differentiation 4	BC054391|Neurod4|11923|neurogenic differentiation 4	NM_007501|Neurod4|11923|neurogenic differentiation 4
mm9_v1_chr17_+_7374435_7374635	1.55844	AACACUG	BC055331|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	NM_011299|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	AK044173|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	BC043064|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	BC056946|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	BC051079|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	AK019881|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	AJ131021|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2
mm9_v1_chr2_-_37278415_37278506	1.55773	AACACUG	BC117951|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	BC117952|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	AK053071|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	NM_001100591|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2
mm9_v1_chr17_-_36046961_36047023	1.55495	AACACUG	AK049682|Atat1|73242|alpha tubulin acetyltransferase 1	AK014265|Atat1|73242|alpha tubulin acetyltransferase 1	AK011750|Atat1|73242|alpha tubulin acetyltransferase 1	AK034725|Atat1|73242|alpha tubulin acetyltransferase 1	AK133694|Atat1|73242|alpha tubulin acetyltransferase 1	BC030669|Atat1|73242|alpha tubulin acetyltransferase 1	AK011350|Atat1|73242|alpha tubulin acetyltransferase 1	BC028847|Atat1|73242|alpha tubulin acetyltransferase 1	AK011838|Atat1|73242|alpha tubulin acetyltransferase 1	AK028297|Atat1|73242|alpha tubulin acetyltransferase 1	NM_001142744|Atat1|73242|alpha tubulin acetyltransferase 1	NM_001142745|Atat1|73242|alpha tubulin acetyltransferase 1	NM_028476|Atat1|73242|alpha tubulin acetyltransferase 1
mm9_v1_chr7_+_129815257_129815287	1.55288	AACACUG	BC138673|Cacng3|54376|calcium channel, voltage-dependent, gamma subunit 3	BC145971|Cacng3|54376|calcium channel, voltage-dependent, gamma subunit 3	NM_019430|Cacng3|54376|calcium channel, voltage-dependent, gamma subunit 3	AJ272044|Cacng3|54376|calcium channel, voltage-dependent, gamma subunit 3
mm9_v1_chr11_+_61890494_61890602	1.55254	AACACUG	AK050982|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1	AK220465|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1	NM_001029936|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1
mm9_v1_chr10_+_20672352_20672469	1.54979	AACACUG	AK080373|Ahi1|52906|Abelson helper integration site 1	NM_026203|Ahi1|52906|Abelson helper integration site 1	AK005991|Ahi1|52906|Abelson helper integration site 1	AK013997|Ahi1|52906|Abelson helper integration site 1	AK019416|Ahi1|52906|Abelson helper integration site 1	BC106130|Ahi1|52906|Abelson helper integration site 1	BC065146|Ahi1|52906|Abelson helper integration site 1	AK036336|Ahi1|52906|Abelson helper integration site 1	AY133241|Ahi1|52906|Abelson helper integration site 1
mm9_v1_chr17_+_33226311_33226311	1.54845	AACACUG	NM_001024950|Zfp563|240068|zinc finger protein 563
mm9_v1_chr8_-_89269853_89269958	1.54801	AACACUG	BC046317|Siah1a|20437|seven in absentia 1A	NM_009172|Siah1a|20437|seven in absentia 1A
mm9_v1_chr18_+_68459987_68460081	1.54327	AACACUG	AK084393|Rnmt|67897|RNA (guanine-7-) methyltransferase	NM_001170953|Rnmt|67897|RNA (guanine-7-) methyltransferase	NM_026440|Rnmt|67897|RNA (guanine-7-) methyltransferase	AK011300|Rnmt|67897|RNA (guanine-7-) methyltransferase	AK082331|Rnmt|67897|RNA (guanine-7-) methyltransferase	AK031780|Rnmt|67897|RNA (guanine-7-) methyltransferase	AK015403|Rnmt|67897|RNA (guanine-7-) methyltransferase	BC021794|Rnmt|67897|RNA (guanine-7-) methyltransferase
mm9_v1_chr15_+_4325490_4325644	1.54304	AACACUG	AK038575|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	NM_177355|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	BC137637|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	BC137639|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	AK044972|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3
mm9_v1_chr19_-_5085471_5085483	1.54166	AACACUG	BC072634|Tmem151a|381199|transmembrane protein 151A	NM_001001885|Tmem151a|381199|transmembrane protein 151A
mm9_v1_chr11_-_74739244_74739299	1.53943	AACACUG	AB232340|Srr|27364|serine racemase	AB232342|Srr|27364|serine racemase	NM_001163311|Srr|27364|serine racemase	NM_013761|Srr|27364|serine racemase
mm9_v1_chr4_-_33037783_33037814	1.53558	AACACUG	AK135024|Ankrd6|140577|ankyrin repeat domain 6	NM_001012451|Ankrd6|140577|ankyrin repeat domain 6
mm9_v1_chr5_-_138404150_138404333	1.53553	AACACUG	AK034037|Gjc3|118446|gap junction protein, gamma 3	BC125305|Gjc3|118446|gap junction protein, gamma 3	AK047368|Gjc3|118446|gap junction protein, gamma 3	NM_080450|Gjc3|118446|gap junction protein, gamma 3	AK045577|Gjc3|118446|gap junction protein, gamma 3	AK147913|Gjc3|118446|gap junction protein, gamma 3
mm9_v1_chrX_+_104451216_104451366	1.53305	AACACUG	AK171832|Gpr174|213439|G protein-coupled receptor 174	NM_001177781|Gpr174|213439|G protein-coupled receptor 174	AK156069|Gpr174|213439|G protein-coupled receptor 174	AK153611|Gpr174|213439|G protein-coupled receptor 174	NM_001033251|Gpr174|213439|G protein-coupled receptor 174
mm9_v1_chr5_-_86601756_86601789	1.52905	AACACUG	AK053583|Uba6|231380|ubiquitin-like modifier activating enzyme 6	BC063048|Uba6|231380|ubiquitin-like modifier activating enzyme 6	NM_172712|Uba6|231380|ubiquitin-like modifier activating enzyme 6	AK086539|Uba6|231380|ubiquitin-like modifier activating enzyme 6
mm9_v1_chr9_-_20325813_20325863	1.52227	AACACUG	BC048701|Zfp266|77519|zinc finger protein 266	BC061209|Zfp266|77519|zinc finger protein 266	AK081787|Zfp266|77519|zinc finger protein 266	AK019992|Zfp266|77519|zinc finger protein 266	BC089552|Zfp266|77519|zinc finger protein 266	NM_001082485|Zfp266|77519|zinc finger protein 266	NM_001135019|Zfp266|77519|zinc finger protein 266
mm9_v1_chr6_-_144997311_144997331	1.52223	AACACUG	AK036309|Bcat1|12035|branched chain aminotransferase 1, cytosolic	NM_001024468|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr2_+_163428044_163428072	1.51196	AACACUG	AK039450|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_029512|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_181734|Ttpal|76080|tocopherol (alpha) transfer protein-like
mm9_v1_chr2_-_101489613_101489698	1.50876	AACACUG	BC138342|Rag1|19373|recombination activating gene 1	M29475|Rag1|19373|recombination activating gene 1	AK088725|Rag1|19373|recombination activating gene 1	AK162974|Rag1|19373|recombination activating gene 1	DQ112091|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	DQ112092|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	NM_009019|Rag1|19373|recombination activating gene 1
mm9_v1_chr8_+_85387234_85387370	1.50119	AACACUG	AK032722|Rnf150|330812|ring finger protein 150	AK041412|Rnf150|330812|ring finger protein 150	NM_177378|Rnf150|330812|ring finger protein 150	AK220374|Rnf150|330812|ring finger protein 150
mm9_v1_chr16_-_20621287_20621552	1.50083	AACACUG	AK013788|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147550|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147736|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147745|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC157896|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	NM_028420|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2
mm9_v1_chr8_+_23348971_23348971	1.49827	AACACUG	AB039946|Thsd1|56229|thrombospondin, type I, domain 1	BC119603|Thsd1|56229|thrombospondin, type I, domain 1	NM_019576|Thsd1|56229|thrombospondin, type I, domain 1
mm9_v1_chr1_-_59293936_59294089	1.49608	AACACUG	AK029858|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_001159948|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	BC046828|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	BC031479|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	AB053307|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_028717|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_146109|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)
mm9_v1_chr9_+_69245718_69245804	1.49487	AACACUG	AK163917|Narg2|93697|NMDA receptor-regulated gene 2	AK042916|Narg2|93697|NMDA receptor-regulated gene 2	AK046121|Narg2|93697|NMDA receptor-regulated gene 2	AK041772|Narg2|93697|NMDA receptor-regulated gene 2	AK134186|Narg2|93697|NMDA receptor-regulated gene 2	AY244558|Narg2|93697|NMDA receptor-regulated gene 2	BC068183|Narg2|93697|NMDA receptor-regulated gene 2	NM_145618|Narg2|93697|NMDA receptor-regulated gene 2
mm9_v1_chr15_+_68758773_68758908	1.49389	AACACUG	AF079763|Khdrbs3|13992|KH domain containing, RNA binding, signal transduction associated 3	AF099092|Khdrbs3|13992|KH domain containing, RNA binding, signal transduction associated 3	NM_010158|Khdrbs3|13992|KH domain containing, RNA binding, signal transduction associated 3	AK014353|Khdrbs3|13992|KH domain containing, RNA binding, signal transduction associated 3	BC057577|Khdrbs3|13992|KH domain containing, RNA binding, signal transduction associated 3
mm9_v1_chr1_-_178737254_178737254	1.491	AACACUG	NM_001099637|Cep170|545389|centrosomal protein 170
mm9_v1_chr18_+_61123204_61123218	1.48675	AACACUG	NM_009792|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	X87142|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr8_+_23587151_23587348	1.48638	AACACUG	NM_011394|Slc20a2|20516|solute carrier family 20, member 2	AK170985|Slc20a2|20516|solute carrier family 20, member 2	BC046510|Slc20a2|20516|solute carrier family 20, member 2	AK157206|Slc20a2|20516|solute carrier family 20, member 2	AK087507|Slc20a2|20516|solute carrier family 20, member 2
mm9_v1_chr9_+_53345151_53345154	1.47936	AACACUG	AK080294|Npat|244879|nuclear protein in the AT region	NM_001081152|Npat|244879|nuclear protein in the AT region
mm9_v1_chr15_+_100701068_100701116	1.47856	AACACUG	NM_001077499|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AK158609|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr5_+_89012596_89012599	1.47574	AACACUG	BC049127|Rufy3|52822|RUN and FYVE domain containing 3	NM_027530|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr17_+_25325344_25325353	1.47306	AACACUG	NM_001197024|Unkl|74154|unkempt-like (Drosophila)
mm9_v1_chr9_+_95459990_95460369	1.46015	AACACUG	AY424298|Paqr9|75552|progestin and adipoQ receptor family member IX	NM_198414|Paqr9|75552|progestin and adipoQ receptor family member IX	AK133021|Paqr9|75552|progestin and adipoQ receptor family member IX
mm9_v1_chrX_+_82819294_82819360	1.45437	AACACUG	AK220185|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3	NM_025729|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm9_v1_chr2_+_149656518_149656618	1.44744	AACACUG	NM_001085521|Tmem90b|433485|transmembrane protein 90B
mm9_v1_chrX_-_136533089_136533133	1.44642	AACACUG	BC037024|Rbm41|237073|RNA binding motif protein 41	AK077972|Rbm41|237073|RNA binding motif protein 41	NM_001172147|Rbm41|237073|RNA binding motif protein 41	NM_001172148|Rbm41|237073|RNA binding motif protein 41	NM_153586|Rbm41|237073|RNA binding motif protein 41
mm9_v1_chr5_-_115584921_115584983	1.4428	AACACUG	AK045128|Unc119b|106840|unc-119 homolog B (C. elegans)	BC115529|Unc119b|106840|unc-119 homolog B (C. elegans)	BC112388|Unc119b|106840|unc-119 homolog B (C. elegans)	AK082614|Unc119b|106840|unc-119 homolog B (C. elegans)	NM_175352|Unc119b|106840|unc-119 homolog B (C. elegans)
mm9_v1_chr5_-_102498929_102498975	1.43662	AACACUG	AK047077|Wdfy3|72145|WD repeat and FYVE domain containing 3	AY336569|Wdfy3|72145|WD repeat and FYVE domain containing 3	NM_172882|Wdfy3|72145|WD repeat and FYVE domain containing 3
mm9_v1_chr9_+_55889639_55889686	1.43218	AACACUG	AK041996|Rcn2|26611|reticulocalbin 2	NM_011992|Rcn2|26611|reticulocalbin 2	AF049125|Rcn2|26611|reticulocalbin 2	AK077486|Rcn2|26611|reticulocalbin 2	AK077734|Rcn2|26611|reticulocalbin 2	AK079156|Rcn2|26611|reticulocalbin 2	AK169765|Rcn2|26611|reticulocalbin 2	AK078106|Rcn2|26611|reticulocalbin 2	BC132320|Rcn2|26611|reticulocalbin 2	BC145668|Rcn2|26611|reticulocalbin 2
mm9_v1_chr1_-_107253245_107253286	1.42677	AACACUG	AK044638|Rnf152|320311|ring finger protein 152	NM_001160368|Rnf152|320311|ring finger protein 152	NM_178779|Rnf152|320311|ring finger protein 152
mm9_v1_chr12_-_66066481_66066522	1.42104	AACACUG	BC018469|Klhl28|66689|kelch-like 28 (Drosophila)	BC037017|Klhl28|66689|kelch-like 28 (Drosophila)	AK002637|Klhl28|66689|kelch-like 28 (Drosophila)	AK013278|Klhl28|66689|kelch-like 28 (Drosophila)	AK012778|Klhl28|66689|kelch-like 28 (Drosophila)	AK014466|Klhl28|66689|kelch-like 28 (Drosophila)	NM_025707|Klhl28|66689|kelch-like 28 (Drosophila)
mm9_v1_chr3_+_7503409_7503519	1.41502	AACACUG	NM_173181|Fam164a|67306|family with sequence similarity 164, member A	BC087731|Fam164a|67306|family with sequence similarity 164, member A	AK083941|Fam164a|67306|family with sequence similarity 164, member A	AK170609|Fam164a|67306|family with sequence similarity 164, member A	AK085187|Fam164a|67306|family with sequence similarity 164, member A	AK014202|Fam164a|67306|family with sequence similarity 164, member A	BC044809|Fam164a|67306|family with sequence similarity 164, member A
mm9_v1_chr4_+_49534088_49534181	1.41454	AACACUG	AK051265|Zfp189|230162|zinc finger protein 189	NM_145547|Zfp189|230162|zinc finger protein 189	BC021326|Zfp189|230162|zinc finger protein 189	AK049475|Zfp189|230162|zinc finger protein 189	BC087833|Zfp189|230162|zinc finger protein 189
mm9_v1_chr4_-_148001104_148001104	1.4136	AACACUG	NM_001003898|Tardbp|230908|TAR DNA binding protein	NM_001003899|Tardbp|230908|TAR DNA binding protein	NM_001008545|Tardbp|230908|TAR DNA binding protein	NM_001008546|Tardbp|230908|TAR DNA binding protein	NM_145556|Tardbp|230908|TAR DNA binding protein
mm9_v1_chr6_-_145024596_145024703	1.41254	AACACUG	BC053706|Bcat1|12035|branched chain aminotransferase 1, cytosolic	X17502|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK167232|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK166971|Bcat1|12035|branched chain aminotransferase 1, cytosolic	NM_007532|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK168249|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr6_+_72047563_72047686	1.41209	AACACUG	AK165726|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	NM_001035228|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	NM_011375|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AF119416|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AK159000|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AK012961|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AB018048|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	BC138557|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	BC138559|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
mm9_v1_chr17_+_31194623_31194718	1.41164	AACACUG	NM_009593|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	AF323659|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	Z48745|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	U34920|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	BC119471|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	AK037433|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1
mm9_v1_chr13_+_76522408_76522408	1.40511	AACACUG	AK047562|Mctp1|78771|multiple C2 domains, transmembrane 1	NM_030174|Mctp1|78771|multiple C2 domains, transmembrane 1
mm9_v1_chr7_-_3645124_3645179	1.40418	AACACUG	AK154606|Mboat7|77582|membrane bound O-acyltransferase domain containing 7	AB055410|Mboat7|77582|membrane bound O-acyltransferase domain containing 7	NM_029934|Mboat7|77582|membrane bound O-acyltransferase domain containing 7
mm9_v1_chr3_+_145421621_145421769	1.39682	AACACUG	AK143507|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	AK148907|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	NM_026993|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	AK010430|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	BC034505|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1
mm9_v1_chr8_+_74764023_74764030	1.39325	AACACUG	M62419|Ap1m1|11767|adaptor-related protein complex AP-1, mu subunit 1	NM_007456|Ap1m1|11767|adaptor-related protein complex AP-1, mu subunit 1
mm9_v1_chr7_+_63495140_63495177	1.38766	AACACUG	M97900|Oca2|18431|oculocutaneous albinism II	NM_021879|Oca2|18431|oculocutaneous albinism II	AK051897|Oca2|18431|oculocutaneous albinism II	BC119220|Oca2|18431|oculocutaneous albinism II	BC120549|Oca2|18431|oculocutaneous albinism II	AK087494|Oca2|18431|oculocutaneous albinism II
mm9_v1_chr6_+_92041408_92041534	1.38662	AACACUG	NM_011630|Nr2c2|22026|nuclear receptor subfamily 2, group C, member 2	AK157305|Nr2c2|22026|nuclear receptor subfamily 2, group C, member 2
mm9_v1_chr3_-_144233110_144233181	1.38524	AACACUG	AK165112|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1	AK088698|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1	NM_011828|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1
mm9_v1_chr11_-_55125758_55125758	1.37503	AACACUG	NM_001029988|Fat2|245827|FAT tumor suppressor homolog 2 (Drosophila)
mm9_v1_chr18_+_23912225_23912225	1.3737	AACACUG	AK028823|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	NM_001162941|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr2_-_178149153_178149214	1.36879	AACACUG	NM_001085501|Ppp1r3d|228966|protein phosphatase 1, regulatory subunit 3D
mm9_v1_chr2_+_119500777_119500991	1.36834	AACACUG	NM_030112|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC048535|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC022717|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC038032|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117848|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117849|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK177377|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr11_-_8564514_8564596	1.36824	AACACUG	AK052680|Tns3|319939|tensin 3	AK089717|Tns3|319939|tensin 3	NM_001083587|Tns3|319939|tensin 3
mm9_v1_chr8_-_123191878_123192011	1.36662	AACACUG	AK042704|Cox4nb|18117|COX4 neighbor	AK148190|Cox4nb|18117|COX4 neighbor	BC009103|Cox4nb|18117|COX4 neighbor	AK143131|Cox4nb|18117|COX4 neighbor	AK161438|Cox4nb|18117|COX4 neighbor	AF052621|Cox4nb|18117|COX4 neighbor	AK164130|Cox4nb|18117|COX4 neighbor	NM_010926|Cox4nb|18117|COX4 neighbor
mm9_v1_chr4_+_28740280_28740313	1.36566	AACACUG	AK033903|Epha7|13841|Eph receptor A7	NM_001122889|Epha7|13841|Eph receptor A7	NM_010141|Epha7|13841|Eph receptor A7	X79082|Epha7|13841|Eph receptor A7	X79083|Epha7|13841|Eph receptor A7	X79084|Epha7|13841|Eph receptor A7
mm9_v1_chr6_-_122692754_122692762	1.3649	AACACUG	AK140176|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	NM_011401|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3
mm9_v1_chr17_+_78599556_78599594	1.36175	AACACUG	NM_015800|Crim1|50766|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm9_v1_chr8_-_93659394_93659394	1.36139	AACACUG	NM_010241|Aktip|14339|thymoma viral proto-oncogene 1 interacting protein
mm9_v1_chr12_+_56937309_56937356	1.35277	AACACUG	AK154678|Brms1l|52592|breast cancer metastasis-suppressor 1-like	AK155742|Brms1l|52592|breast cancer metastasis-suppressor 1-like	NM_001037756|Brms1l|52592|breast cancer metastasis-suppressor 1-like
mm9_v1_chr3_+_69120782_69120852	1.3503	AACACUG	AK032529|Ppm1l|242083|protein phosphatase 1 (formerly 2C)-like	AK045724|Ppm1l|242083|protein phosphatase 1 (formerly 2C)-like	AK147876|Ppm1l|242083|protein phosphatase 1 (formerly 2C)-like	AK165160|Ppm1l|242083|protein phosphatase 1 (formerly 2C)-like	AK142789|Ppm1l|242083|protein phosphatase 1 (formerly 2C)-like	AK220523|Ppm1l|242083|protein phosphatase 1 (formerly 2C)-like	AK035912|Ppm1l|242083|protein phosphatase 1 (formerly 2C)-like	AK147389|Ppm1l|242083|protein phosphatase 1 (formerly 2C)-like	BC096031|Ppm1l|242083|protein phosphatase 1 (formerly 2C)-like	NM_178726|Ppm1l|242083|protein phosphatase 1 (formerly 2C)-like	AK131646|Ppm1l|242083|protein phosphatase 1 (formerly 2C)-like
mm9_v1_chr1_-_72921438_72921462	1.34568	AACACUG	BC057447|Igfbp5|16011|insulin-like growth factor binding protein 5	NM_010518|Igfbp5|16011|insulin-like growth factor binding protein 5	AK142108|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr19_+_42245036_42245077	1.34079	AACACUG	NM_001164531|Zfyve27|319740|zinc finger, FYVE domain containing 27	NM_177319|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr19_+_31157330_31157568	1.33883	AACACUG	NM_031249|Cstf2t|83410|cleavage stimulation factor, 3' pre-RNA subunit 2, tau	AK050407|Cstf2t|83410|cleavage stimulation factor, 3' pre-RNA subunit 2, tau	AK082910|Cstf2t|83410|cleavage stimulation factor, 3' pre-RNA subunit 2, tau	AF322194|Cstf2t|83410|cleavage stimulation factor, 3' pre-RNA subunit 2, tau	AK030121|Cstf2t|83410|cleavage stimulation factor, 3' pre-RNA subunit 2, tau	AK034853|Cstf2t|83410|cleavage stimulation factor, 3' pre-RNA subunit 2, tau	AK084696|Cstf2t|83410|cleavage stimulation factor, 3' pre-RNA subunit 2, tau	AK173002|Cstf2t|83410|cleavage stimulation factor, 3' pre-RNA subunit 2, tau	BC026995|Cstf2t|83410|cleavage stimulation factor, 3' pre-RNA subunit 2, tau
mm9_v1_chr6_-_92164804_92164868	1.33129	AACACUG	BC049106|Zfyve20|78287|zinc finger, FYVE domain containing 20	NM_030081|Zfyve20|78287|zinc finger, FYVE domain containing 20	AK019909|Zfyve20|78287|zinc finger, FYVE domain containing 20	BC017622|Zfyve20|78287|zinc finger, FYVE domain containing 20
mm9_v1_chr10_+_18564876_18564915	1.33089	AACACUG	AF249870|Perp|64058|PERP, TP53 apoptosis effector	NM_022032|Perp|64058|PERP, TP53 apoptosis effector
mm9_v1_chr6_+_4853319_4853431	1.33021	AACACUG	AB091828|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	NM_181595|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	AK158559|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	BC053748|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm9_v1_chr6_+_56782042_56782055	1.32043	AACACUG	BC043129|Fkbp9|27055|FK506 binding protein 9	NM_012056|Fkbp9|27055|FK506 binding protein 9
mm9_v1_chr3_+_103718042_103718073	1.31984	AACACUG	AB101658|Rsbn1|229675|rosbin, round spermatid basic protein 1	NM_172684|Rsbn1|229675|rosbin, round spermatid basic protein 1	BC139213|Rsbn1|229675|rosbin, round spermatid basic protein 1	BC139215|Rsbn1|229675|rosbin, round spermatid basic protein 1
mm9_v1_chr3_-_126701367_126701380	1.31842	AACACUG	AK032060|Ank2|109676|ankyrin 2, brain	NM_178655|Ank2|109676|ankyrin 2, brain
mm9_v1_chr18_-_46440360_46440503	1.31838	AACACUG	AK028188|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	AK170240|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	BC141021|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	AK081731|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	NM_172627|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit
mm9_v1_chrX_-_92221960_92222040	1.31808	AACACUG	AK155170|Spin4|270624|spindlin family, member 4	BC027796|Spin4|270624|spindlin family, member 4	AK047896|Spin4|270624|spindlin family, member 4	AK147852|Spin4|270624|spindlin family, member 4	AK043030|Spin4|270624|spindlin family, member 4	AK036158|Spin4|270624|spindlin family, member 4	NM_178753|Spin4|270624|spindlin family, member 4
mm9_v1_chr16_+_97578333_97578399	1.31756	AACACUG	NM_019517|Bace2|56175|beta-site APP-cleaving enzyme 2	AK052309|Bace2|56175|beta-site APP-cleaving enzyme 2	AK078770|Bace2|56175|beta-site APP-cleaving enzyme 2	BC120773|Bace2|56175|beta-site APP-cleaving enzyme 2	BC131947|Bace2|56175|beta-site APP-cleaving enzyme 2	AF216310|Bace2|56175|beta-site APP-cleaving enzyme 2	AK165036|Bace2|56175|beta-site APP-cleaving enzyme 2
mm9_v1_chr8_+_26750755_26750755	1.31673	AACACUG	NM_001081269|Whsc1l1|234135|Wolf-Hirschhorn syndrome candidate 1-like 1 (human)
mm9_v1_chr6_+_90412566_90412633	1.31305	AACACUG	AK138824|Klf15|66277|Kruppel-like factor 15	AK142618|Klf15|66277|Kruppel-like factor 15	AK009739|Klf15|66277|Kruppel-like factor 15	NM_023184|Klf15|66277|Kruppel-like factor 15
mm9_v1_chr6_-_67485802_67485823	1.30925	AACACUG	NM_020047|Tacstd2|56753|tumor-associated calcium signal transducer 2
mm9_v1_chr11_-_107331865_107332065	1.30773	AACACUG	BC082333|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	BC108351|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AB077281|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK153625|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK171918|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK172137|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	NM_145823|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK171340|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1
mm9_v1_chr11_-_90499370_90499421	1.30155	AACACUG	BC032881|Stxbp4|20913|syntaxin binding protein 4	AK012293|Stxbp4|20913|syntaxin binding protein 4	AK032998|Stxbp4|20913|syntaxin binding protein 4	AK049001|Stxbp4|20913|syntaxin binding protein 4	NM_011505|Stxbp4|20913|syntaxin binding protein 4
mm9_v1_chr14_+_84843366_84843370	1.30131	AACACUG	AK142358|Pcdh17|219228|protocadherin 17	AK147265|Pcdh17|219228|protocadherin 17	NM_001013753|Pcdh17|219228|protocadherin 17
mm9_v1_chr2_-_125608472_125608605	1.29444	AACACUG	BC095939|Secisbp2l|70354|SECIS binding protein 2-like	AK145135|Secisbp2l|70354|SECIS binding protein 2-like	AK169713|Secisbp2l|70354|SECIS binding protein 2-like	BC141056|Secisbp2l|70354|SECIS binding protein 2-like	AK049924|Secisbp2l|70354|SECIS binding protein 2-like	NM_177608|Secisbp2l|70354|SECIS binding protein 2-like
mm9_v1_chr12_-_55963776_55963890	1.29157	AACACUG	AK147174|Cfl2|12632|cofilin 2, muscle	BC007138|Cfl2|12632|cofilin 2, muscle	AK004659|Cfl2|12632|cofilin 2, muscle	L29468|Cfl2|12632|cofilin 2, muscle	NM_007688|Cfl2|12632|cofilin 2, muscle
mm9_v1_chr2_-_102241053_102241195	1.28992	AACACUG	AJ278191|Trim44|80985|tripartite motif-containing 44	NM_020267|Trim44|80985|tripartite motif-containing 44
mm9_v1_chr8_-_13974679_13974776	1.28904	AACACUG	BC099613|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK166972|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK166875|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK077810|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC132465|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC132467|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC145286|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK163687|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	NM_173744|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene
mm9_v1_chr17_+_49071906_49072030	1.28162	AACACUG	BC139418|Lrfn2|70530|leucine rich repeat and fibronectin type III domain containing 2	NM_027452|Lrfn2|70530|leucine rich repeat and fibronectin type III domain containing 2	AK122476|Lrfn2|70530|leucine rich repeat and fibronectin type III domain containing 2	AK044375|Lrfn2|70530|leucine rich repeat and fibronectin type III domain containing 2
mm9_v1_chr19_-_46413027_46413167	1.27925	AACACUG	AK134110|Cuedc2|67116|CUE domain containing 2	AK178562|Cuedc2|67116|CUE domain containing 2	AK186231|Cuedc2|67116|CUE domain containing 2	AK207375|Cuedc2|67116|CUE domain containing 2	AK003457|Cuedc2|67116|CUE domain containing 2	AK013884|Cuedc2|67116|CUE domain containing 2	BC003442|Cuedc2|67116|CUE domain containing 2	AK008842|Cuedc2|67116|CUE domain containing 2	NM_001164290|Cuedc2|67116|CUE domain containing 2	NM_001164291|Cuedc2|67116|CUE domain containing 2	NM_001164292|Cuedc2|67116|CUE domain containing 2	NM_001164293|Cuedc2|67116|CUE domain containing 2	NM_001164294|Cuedc2|67116|CUE domain containing 2	NM_001164295|Cuedc2|67116|CUE domain containing 2	NM_024192|Cuedc2|67116|CUE domain containing 2
mm9_v1_chr2_+_28048592_28048772	1.27736	AACACUG	NM_001038613|Olfm1|56177|olfactomedin 1	NM_001038614|Olfm1|56177|olfactomedin 1	AK003031|Olfm1|56177|olfactomedin 1
mm9_v1_chr17_-_59152686_59152744	1.27703	AACACUG	BC057657|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12	AK147867|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12	AK083846|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12	AK002641|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12	NM_026497|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm9_v1_chr10_-_90586663_90586709	1.27121	AACACUG	BC004030|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK077274|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK152341|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK168580|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	NM_133668|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
mm9_v1_chr3_-_78949796_78949796	1.27055	AACACUG	BC067056|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2	NM_001099624|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr9_+_86636433_86636473	1.27051	AACACUG	NM_178738|Prss35|244954|protease, serine, 35	AK030671|Prss35|244954|protease, serine, 35	AK031411|Prss35|244954|protease, serine, 35	AK031644|Prss35|244954|protease, serine, 35	AK076281|Prss35|244954|protease, serine, 35	BC075675|Prss35|244954|protease, serine, 35	DQ223037|Prss35|244954|protease, serine, 35
mm9_v1_chr11_-_116060358_116060358	1.26953	AACACUG	BC056448|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	NM_015729|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl
mm9_v1_chrX_+_132804791_132804829	1.26717	AACACUG	NM_001110233|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1	NM_001110234|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1	NM_009750|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr9_+_44925922_44925963	1.26187	AACACUG	NM_001014761|Scn2b|72821|sodium channel, voltage-gated, type II, beta	AB118947|Scn2b|72821|sodium channel, voltage-gated, type II, beta	BC092225|Scn2b|72821|sodium channel, voltage-gated, type II, beta
mm9_v1_chr5_+_108494692_108494781	1.26084	AACACUG	AK031409|Mtf2|17765|metal response element binding transcription factor 2	BC024889|Mtf2|17765|metal response element binding transcription factor 2	AK032798|Mtf2|17765|metal response element binding transcription factor 2	AK032819|Mtf2|17765|metal response element binding transcription factor 2	AK137539|Mtf2|17765|metal response element binding transcription factor 2	BC050826|Mtf2|17765|metal response element binding transcription factor 2	AK030752|Mtf2|17765|metal response element binding transcription factor 2	AB050541|Mtf2|17765|metal response element binding transcription factor 2	BC092237|Mtf2|17765|metal response element binding transcription factor 2	NM_013827|Mtf2|17765|metal response element binding transcription factor 2	BC100340|Mtf2|17765|metal response element binding transcription factor 2	BC029076|Mtf2|17765|metal response element binding transcription factor 2
mm9_v1_chr10_+_74523633_74523640	1.25992	AACACUG	NM_001081412|Bcr|110279|breakpoint cluster region
mm9_v1_chr4_-_34562138_34562200	1.25181	AACACUG	AB190257|Orc3|50793|origin recognition complex, subunit 3	BC061252|Orc3|50793|origin recognition complex, subunit 3	AK145324|Orc3|50793|origin recognition complex, subunit 3	AK045388|Orc3|50793|origin recognition complex, subunit 3	AJ132830|Orc3|50793|origin recognition complex, subunit 3	NM_001159563|Orc3|50793|origin recognition complex, subunit 3	NM_015824|Orc3|50793|origin recognition complex, subunit 3	AK086579|Orc3|50793|origin recognition complex, subunit 3
mm9_v1_chr4_-_57314708_57314708	1.24184	AACACUG	AK052928|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3	NM_011207|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3
mm9_v1_chr10_+_19076344_19076344	1.24021	AACACUG	NM_053008|Olig3|94222|oligodendrocyte transcription factor 3
mm9_v1_chr7_-_151656610_151656667	1.2397	AACACUG	U03184|Cttn|13043|cortactin	BC011434|Cttn|13043|cortactin	AK168871|Cttn|13043|cortactin	AK165555|Cttn|13043|cortactin	AK168699|Cttn|13043|cortactin	AK148010|Cttn|13043|cortactin	AK146856|Cttn|13043|cortactin	NM_007803|Cttn|13043|cortactin	AK084249|Cttn|13043|cortactin	AK168945|Cttn|13043|cortactin
mm9_v1_chr4_+_12067263_12067419	1.23792	AACACUG	NM_028226|Rbm12b|72397|RNA binding motif protein 12B	AK030861|Rbm12b|72397|RNA binding motif protein 12B
mm9_v1_chr3_-_82707880_82707898	1.23586	AACACUG	AF255061|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	AK004953|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	NM_023624|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)
mm9_v1_chr1_-_94998418_94998474	1.23146	AACACUG	BC045161|Kif1a|16560|kinesin family member 1A	BC054538|Kif1a|16560|kinesin family member 1A	BC062891|Kif1a|16560|kinesin family member 1A	NM_001110315|Kif1a|16560|kinesin family member 1A	NM_008440|Kif1a|16560|kinesin family member 1A
mm9_v1_chr2_+_166631011_166631132	1.22797	AACACUG	AK087574|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	NM_001085495|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK087920|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	BC158012|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK153722|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm9_v1_chr19_+_53977788_53977896	1.22713	AACACUG	NM_001168491|Pdcd4|18569|programmed cell death 4	NM_001168492|Pdcd4|18569|programmed cell death 4	AK172654|Pdcd4|18569|programmed cell death 4
mm9_v1_chr1_+_194999662_194999887	1.2271	AACACUG	AK077339|A130010J15Rik|319266|RIKEN cDNA A130010J15 gene	NM_001160360|A130010J15Rik|319266|RIKEN cDNA A130010J15 gene	NM_001160359|A130010J15Rik|319266|RIKEN cDNA A130010J15 gene	NM_181048|A130010J15Rik|319266|RIKEN cDNA A130010J15 gene	AK037364|A130010J15Rik|319266|RIKEN cDNA A130010J15 gene	BC055955|A130010J15Rik|319266|RIKEN cDNA A130010J15 gene	AK047686|A130010J15Rik|319266|RIKEN cDNA A130010J15 gene	AK084448|A130010J15Rik|319266|RIKEN cDNA A130010J15 gene
mm9_v1_chr9_+_40076800_40077017	1.22573	AACACUG	NM_001083917|Scn3b|235281|sodium channel, voltage-gated, type III, beta	NM_153522|Scn3b|235281|sodium channel, voltage-gated, type III, beta	NM_178227|Scn3b|235281|sodium channel, voltage-gated, type III, beta	BC058636|Scn3b|235281|sodium channel, voltage-gated, type III, beta	AK049286|Scn3b|235281|sodium channel, voltage-gated, type III, beta	BC058083|Scn3b|235281|sodium channel, voltage-gated, type III, beta	AK051805|Scn3b|235281|sodium channel, voltage-gated, type III, beta	AK173115|Scn3b|235281|sodium channel, voltage-gated, type III, beta	AK049747|Scn3b|235281|sodium channel, voltage-gated, type III, beta
mm9_v1_chr5_-_74464390_74464465	1.22464	AACACUG	BC039916|Usp46|69727|ubiquitin specific peptidase 46	NM_177561|Usp46|69727|ubiquitin specific peptidase 46	AK145298|Usp46|69727|ubiquitin specific peptidase 46
mm9_v1_chr1_+_166205728_166205836	1.22427	AACACUG	BC060044|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	NM_029115|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK076640|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK149168|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK015464|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	BC048086|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene
mm9_v1_chrX_-_70163672_70163735	1.22406	AACACUG	AK010541|Cetn2|26370|centrin 2	AK004081|Cetn2|26370|centrin 2	NM_019405|Cetn2|26370|centrin 2	AK140156|Cetn2|26370|centrin 2
mm9_v1_chr11_+_93747419_93747532	1.2214	AACACUG	AK153919|Mbtd1|103537|mbt domain containing 1	BC064014|Mbtd1|103537|mbt domain containing 1	BC062907|Mbtd1|103537|mbt domain containing 1	NM_134012|Mbtd1|103537|mbt domain containing 1
mm9_v1_chr3_+_113733457_113733508	1.21979	AACACUG	AK140136|Col11a1|12814|collagen, type XI, alpha 1	NM_007729|Col11a1|12814|collagen, type XI, alpha 1	BC052161|Col11a1|12814|collagen, type XI, alpha 1
mm9_v1_chr11_-_30098163_30098286	1.21938	AACACUG	AF017112|Spnb2|20742|spectrin beta 2	AF016040|Spnb2|20742|spectrin beta 2	AK079842|Spnb2|20742|spectrin beta 2	AK157727|Spnb2|20742|spectrin beta 2	AK169544|Spnb2|20742|spectrin beta 2	NM_009260|Spnb2|20742|spectrin beta 2
mm9_v1_chr12_+_87582805_87582876	1.2159	AACACUG	BC048169|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	AK031712|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	AK006185|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	BC058256|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	NM_027405|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	AK147916|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	BC050782|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	AK129299|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene
mm9_v1_chr4_-_33010429_33010479	1.20538	AACACUG	BC065177|Ankrd6|140577|ankyrin repeat domain 6	NM_001012450|Ankrd6|140577|ankyrin repeat domain 6	NM_080471|Ankrd6|140577|ankyrin repeat domain 6
mm9_v1_chr1_-_16509276_16509454	1.20056	AACACUG	AK031102|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)	AF459099|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)	AF459100|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)	AK171076|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)	NM_001111272|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)	NM_025303|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)
mm9_v1_chr18_+_80243633_80243827	1.19967	AACACUG	NM_053117|Pard6g|93737|par-6 partitioning defective 6 homolog gamma (C. elegans)	BC037678|Pard6g|93737|par-6 partitioning defective 6 homolog gamma (C. elegans)	AK035811|Pard6g|93737|par-6 partitioning defective 6 homolog gamma (C. elegans)
mm9_v1_chr17_-_43803963_43804162	1.1982	AACACUG	AK014394|Slc25a27|74011|solute carrier family 25, member 27	NM_028711|Slc25a27|74011|solute carrier family 25, member 27	BC138993|Slc25a27|74011|solute carrier family 25, member 27	BC138994|Slc25a27|74011|solute carrier family 25, member 27	AB106930|Slc25a27|74011|solute carrier family 25, member 27	AK021314|Slc25a27|74011|solute carrier family 25, member 27	AK043831|Slc25a27|74011|solute carrier family 25, member 27
mm9_v1_chr3_+_62142698_62142868	1.19626	AACACUG	NM_001081295|Arhgef26|622434|Rho guanine nucleotide exchange factor (GEF) 26
mm9_v1_chr2_-_120676125_120676339	1.19623	AACACUG	AK046978|Ttbk2|140810|tau tubulin kinase 2	AK053820|Ttbk2|140810|tau tubulin kinase 2	AK137024|Ttbk2|140810|tau tubulin kinase 2	AK148269|Ttbk2|140810|tau tubulin kinase 2	NM_001024856|Ttbk2|140810|tau tubulin kinase 2	NM_001024857|Ttbk2|140810|tau tubulin kinase 2	NM_080788|Ttbk2|140810|tau tubulin kinase 2	AK077011|Ttbk2|140810|tau tubulin kinase 2
mm9_v1_chr9_+_111174321_111174442	1.19216	AACACUG	BC018474|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	NM_175266|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK032284|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK043518|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK030084|Epm2aip1|77781|EPM2A (laforin) interacting protein 1
mm9_v1_chrX_+_91881407_91881417	1.19081	AACACUG	NM_008179|Gspt2|14853|G1 to S phase transition 2	AK050859|Gspt2|14853|G1 to S phase transition 2	AK019241|Gspt2|14853|G1 to S phase transition 2
mm9_v1_chr5_+_34185760_34185844	1.18826	AACACUG	NM_001081102|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_001177884|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_175231|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	BC079668|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)
mm9_v1_chr13_-_43399540_43399575	1.1832	AACACUG	AK147458|Gfod1|328232|glucose-fructose oxidoreductase domain containing 1	NM_001033399|Gfod1|328232|glucose-fructose oxidoreductase domain containing 1
mm9_v1_chr14_-_24823370_24823426	1.18131	AACACUG	AK142894|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	BC065068|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	NM_010610|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
mm9_v1_chr17_-_24342446_24342565	1.18047	AACACUG	AK036088|Tbc1d24|224617|TBC1 domain family, member 24	AK129304|Tbc1d24|224617|TBC1 domain family, member 24	AK084693|Tbc1d24|224617|TBC1 domain family, member 24	AK086293|Tbc1d24|224617|TBC1 domain family, member 24	AK138431|Tbc1d24|224617|TBC1 domain family, member 24	AK045194|Tbc1d24|224617|TBC1 domain family, member 24	AK083833|Tbc1d24|224617|TBC1 domain family, member 24	AK049754|Tbc1d24|224617|TBC1 domain family, member 24	AK147647|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163847|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163848|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163849|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163850|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163851|Tbc1d24|224617|TBC1 domain family, member 24	NM_173186|Tbc1d24|224617|TBC1 domain family, member 24	AK172594|Ntn3|18209|netrin 3
mm9_v1_chr9_+_72122705_72122721	1.17816	AACACUG	NM_146224|Zfp280d|235469|zinc finger protein 280D	AK169622|Zfp280d|235469|zinc finger protein 280D	AK172652|Zfp280d|235469|zinc finger protein 280D	AK083266|Zfp280d|235469|zinc finger protein 280D
mm9_v1_chr4_+_151552208_151552390	1.17771	AACACUG	NM_133348|Acot7|70025|acyl-CoA thioesterase 7	AB049821|Acot7|70025|acyl-CoA thioesterase 7	AB207243|Acot7|70025|acyl-CoA thioesterase 7	AK152277|Acot7|70025|acyl-CoA thioesterase 7	AK163531|AU014716|100263|expressed sequence AU014716	BC013507|Acot7|70025|acyl-CoA thioesterase 7
mm9_v1_chr12_-_57446800_57446880	1.17671	AACACUG	AK077125|Mbip|217588|MAP3K12 binding inhibitory protein 1	AK154318|Mbip|217588|MAP3K12 binding inhibitory protein 1	AK171164|Mbip|217588|MAP3K12 binding inhibitory protein 1	BC002277|Mbip|217588|MAP3K12 binding inhibitory protein 1	NM_145442|Mbip|217588|MAP3K12 binding inhibitory protein 1
mm9_v1_chrX_+_69237187_69237213	1.17661	AACACUG	AK132574|Cnga2|12789|cyclic nucleotide gated channel alpha 2	BC048775|Cnga2|12789|cyclic nucleotide gated channel alpha 2	NM_007724|Cnga2|12789|cyclic nucleotide gated channel alpha 2
mm9_v1_chr4_+_15808409_15808487	1.17491	AACACUG	AK002635|Calb1|12307|calbindin 1	AK005081|Calb1|12307|calbindin 1	AK005243|Calb1|12307|calbindin 1	AK028050|Calb1|12307|calbindin 1	AK038856|Calb1|12307|calbindin 1	AK048517|Calb1|12307|calbindin 1	AK077499|Calb1|12307|calbindin 1	NM_009788|Calb1|12307|calbindin 1	AK028327|Calb1|12307|calbindin 1	AK078358|Calb1|12307|calbindin 1	M21531|Calb1|12307|calbindin 1	BC016421|Calb1|12307|calbindin 1
mm9_v1_chr5_-_51945054_51945159	1.17383	AACACUG	BC066868|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AB061324|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AF049330|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK143753|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK138668|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	NM_008904|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm9_v1_chr12_+_74040868_74041042	1.16667	AACACUG	AK017544|Six6|20476|sine oculis-related homeobox 6 homolog (Drosophila)	AF135267|Six6|20476|sine oculis-related homeobox 6 homolog (Drosophila)	AF050130|Six6|20476|sine oculis-related homeobox 6 homolog (Drosophila)	AK029309|Six6|20476|sine oculis-related homeobox 6 homolog (Drosophila)	NM_011384|Six6|20476|sine oculis-related homeobox 6 homolog (Drosophila)	BC138838|Six6|20476|sine oculis-related homeobox 6 homolog (Drosophila)	BC138839|Six6|20476|sine oculis-related homeobox 6 homolog (Drosophila)	AJ011787|Six6|20476|sine oculis-related homeobox 6 homolog (Drosophila)
mm9_v1_chr7_-_133839152_133839297	1.16524	AACACUG	AK014753|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	BC145468|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	BC145688|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK053901|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	BC055909|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK010828|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK049139|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	NM_029420|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK010748|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)
mm9_v1_chr11_+_6963421_6963491	1.16094	AACACUG	NM_009622|Adcy1|432530|adenylate cyclase 1
mm9_v1_chrX_+_63902456_63902492	1.15358	AACACUG	NM_001161431|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr13_-_54867800_54867840	1.15264	AACACUG	BC019409|Sncb|104069|synuclein, beta	NM_033610|Sncb|104069|synuclein, beta
mm9_v1_chr4_+_138908480_138908511	1.15236	AACACUG	NM_001039200|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	NM_146157|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene
mm9_v1_chr3_+_128916849_128916891	1.15225	AACACUG	AK034846|Pitx2|18741|paired-like homeodomain transcription factor 2	NM_001042502|Pitx2|18741|paired-like homeodomain transcription factor 2	AF048724|Pitx2|18741|paired-like homeodomain transcription factor 2	AJ243597|Pitx2|18741|paired-like homeodomain transcription factor 2
mm9_v1_chr6_+_121133684_121133684	1.15137	AACACUG	AK087637|Pex26|74043|peroxisomal biogenesis factor 26	NM_028730|Pex26|74043|peroxisomal biogenesis factor 26
mm9_v1_chr1_+_132613903_132614127	1.15056	AACACUG	AK036938|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK036991|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	NM_178691|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	BC139034|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK044678|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	BC099948|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK053730|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)
mm9_v1_chrX_-_141921588_141921636	1.14912	AACACUG	AF461135|Amot|27494|angiomotin	NM_153319|Amot|27494|angiomotin	BC057638|Amot|27494|angiomotin
mm9_v1_chr10_+_13686174_13686209	1.14906	AACACUG	AK147244|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147348|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147655|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	NM_010437|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2
mm9_v1_chr17_+_25359526_25359671	1.14564	AACACUG	AK004898|Unkl|74154|unkempt-like (Drosophila)	NM_028789|Unkl|74154|unkempt-like (Drosophila)	BC150842|Unkl|74154|unkempt-like (Drosophila)
mm9_v1_chr15_-_77787128_77787170	1.14553	AACACUG	NM_001017983|Foxred2|239554|FAD-dependent oxidoreductase domain containing 2	NM_001168260|Foxred2|239554|FAD-dependent oxidoreductase domain containing 2
mm9_v1_chr16_-_20241392_20241432	1.14028	AACACUG	AK079603|Map6d1|208158|MAP6 domain containing 1	BC116220|Map6d1|208158|MAP6 domain containing 1	BC116221|Map6d1|208158|MAP6 domain containing 1	AK163656|Map6d1|208158|MAP6 domain containing 1	NM_198599|Map6d1|208158|MAP6 domain containing 1
mm9_v1_chr5_+_74931439_74931607	1.13766	AACACUG	AK168464|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	NM_001159573|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	NM_001159574|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	NM_024183|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	AK049672|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	AK008561|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	AK005061|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	AK164105|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	BC003263|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)
mm9_v1_chr2_+_28061156_28061215	1.13678	AACACUG	D78262|Olfm1|56177|olfactomedin 1	D78263|Olfm1|56177|olfactomedin 1	NM_001038612|Olfm1|56177|olfactomedin 1	NM_019498|Olfm1|56177|olfactomedin 1
mm9_v1_chr2_+_19293231_19293294	1.13498	AACACUG	BC021619|Msrb2|76467|methionine sulfoxide reductase B2	NM_029619|Msrb2|76467|methionine sulfoxide reductase B2	AK009912|Msrb2|76467|methionine sulfoxide reductase B2
mm9_v1_chr12_+_73187085_73187131	1.13009	AACACUG	AK009884|Jkamp|104771|JNK1/MAPK8-associated membrane protein	BC002238|Jkamp|104771|JNK1/MAPK8-associated membrane protein	NM_024205|Jkamp|104771|JNK1/MAPK8-associated membrane protein
mm9_v1_chr8_-_113426341_113426387	1.12355	AACACUG	AK140503|Fuk|234730|fucokinase	AK164340|Fuk|234730|fucokinase	AJ297482|Fuk|234730|fucokinase	AJ534942|Fuk|234730|fucokinase	AY223865|Fuk|234730|fucokinase	NM_172283|Fuk|234730|fucokinase	NM_181666|Fuk|234730|fucokinase	AK161763|Fuk|234730|fucokinase
mm9_v1_chr3_-_104315778_104315782	1.11883	AACACUG	AK036116|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2	NM_001025067|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chr10_-_76881008_76881043	1.11726	AACACUG	AK138318|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AK147298|Adarb1|110532|adenosine deaminase, RNA-specific, B1	NM_001024837|Adarb1|110532|adenosine deaminase, RNA-specific, B1	NM_130895|Adarb1|110532|adenosine deaminase, RNA-specific, B1
mm9_v1_chr3_-_94386590_94386623	1.11685	AACACUG	AK147452|Snx27|76742|sorting nexin family member 27	NM_001082484|Snx27|76742|sorting nexin family member 27	NM_029721|Snx27|76742|sorting nexin family member 27
mm9_v1_chr14_-_70205351_70205356	1.11685	AACACUG	AK021405|Rhobtb2|246710|Rho-related BTB domain containing 2	NM_153514|Rhobtb2|246710|Rho-related BTB domain containing 2
mm9_v1_chr7_-_7162599_7162708	1.11212	AACACUG	BC108353|Zfp772|232855|zinc finger protein 772	BC023179|Zfp772|232855|zinc finger protein 772	AK142307|Zfp772|232855|zinc finger protein 772	NM_145577|Zfp772|232855|zinc finger protein 772
mm9_v1_chr1_+_55462764_55462802	1.10934	AACACUG	AK083136|Plcl1|227120|phospholipase C-like 1	AK161943|Plcl1|227120|phospholipase C-like 1	NM_001114663|Plcl1|227120|phospholipase C-like 1	AK135610|Plcl1|227120|phospholipase C-like 1
mm9_v1_chr18_+_35278553_35278581	1.10857	AACACUG	NM_009818|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	X59990|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK148496|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC060174|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC068316|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	D90362|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC048163|Ctnna1|12385|catenin (cadherin associated protein), alpha 1
mm9_v1_chr12_-_40764554_40764600	1.10439	AACACUG	NM_001039515|Arl4a|11861|ADP-ribosylation factor-like 4A	AK161281|Arl4a|11861|ADP-ribosylation factor-like 4A
mm9_v1_chr1_-_58642994_58643176	1.09695	AACACUG	AK052638|Fam126b|213056|family with sequence similarity 126, member B	BC068302|Fam126b|213056|family with sequence similarity 126, member B	AK144602|Fam126b|213056|family with sequence similarity 126, member B	BC049806|Fam126b|213056|family with sequence similarity 126, member B	AK168372|Fam126b|213056|family with sequence similarity 126, member B	NM_172513|Fam126b|213056|family with sequence similarity 126, member B
mm9_v1_chr15_-_48623520_48623540	1.08814	AACACUG	AK140264|Csmd3|239420|CUB and Sushi multiple domains 3	AK163122|Csmd3|239420|CUB and Sushi multiple domains 3	NM_001081391|Csmd3|239420|CUB and Sushi multiple domains 3
mm9_v1_chr2_-_120996813_120996890	1.088	AACACUG	AK031943|Zscan29|99334|zinc finger SCAN domains 29	AK050477|Zscan29|99334|zinc finger SCAN domains 29	NM_178889|Zscan29|99334|zinc finger SCAN domains 29
mm9_v1_chr4_+_115084228_115084247	1.08737	AACACUG	NM_172306|Cyp4a12b|13118|cytochrome P450, family 4, subfamily a, polypeptide 12B	AK098123|Cyp4a12b|13118|cytochrome P450, family 4, subfamily a, polypeptide 12B	BC060945|Cyp4a12b|13118|cytochrome P450, family 4, subfamily a, polypeptide 12B
mm9_v1_chr7_-_88974235_88974382	1.08582	AACACUG	BC072618|Btbd1|83962|BTB (POZ) domain containing 1	NM_146193|Btbd1|83962|BTB (POZ) domain containing 1	BC087937|Btbd1|83962|BTB (POZ) domain containing 1	AK088345|Btbd1|83962|BTB (POZ) domain containing 1
mm9_v1_chr12_+_4082573_4082658	1.08416	AACACUG	NM_153082|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	BC051140|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	AK049300|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	BC042643|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27
mm9_v1_chr9_-_42913797_42913909	1.08296	AACACUG	AK009331|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12	AK122267|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12	NM_027144|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12
mm9_v1_chr8_+_68141935_68142010	1.0825	AACACUG	AK013582|March1|72925|membrane-associated ring finger (C3HC4) 1	NM_001166372|March1|72925|membrane-associated ring finger (C3HC4) 1	AK086052|March1|72925|membrane-associated ring finger (C3HC4) 1	AK137337|March1|72925|membrane-associated ring finger (C3HC4) 1	AK160684|March1|72925|membrane-associated ring finger (C3HC4) 1
mm9_v1_chr18_-_75857207_75857349	1.07834	AACACUG	BC058104|Ctif|269037|CBP80/20-dependent translation initiation factor	NM_201354|Ctif|269037|CBP80/20-dependent translation initiation factor
mm9_v1_chr15_+_79921725_79921855	1.0771	AACACUG	BC138728|Syngr1|20972|synaptogyrin 1	BC138729|Syngr1|20972|synaptogyrin 1	NM_009303|Syngr1|20972|synaptogyrin 1	NM_207708|Syngr1|20972|synaptogyrin 1	AK044007|Syngr1|20972|synaptogyrin 1	AJ002306|Syngr1|20972|synaptogyrin 1	AK156134|Syngr1|20972|synaptogyrin 1	AK002972|Syngr1|20972|synaptogyrin 1	AK010442|Syngr1|20972|synaptogyrin 1	AK153096|Syngr1|20972|synaptogyrin 1	AK153187|Syngr1|20972|synaptogyrin 1	BC048172|Syngr1|20972|synaptogyrin 1	AK194549|Syngr1|20972|synaptogyrin 1
mm9_v1_chr6_-_148392841_148392873	1.07679	AACACUG	AK137545|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1	AK046396|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1	NM_198967|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1
mm9_v1_chr12_+_25659777_25659836	1.07443	AACACUG	AK021172|Kidins220|77480|kinase D-interacting substrate 220	NM_001081378|Kidins220|77480|kinase D-interacting substrate 220	BC157898|Kidins220|77480|kinase D-interacting substrate 220
mm9_v1_chr15_+_83998239_83998332	1.06931	AACACUG	NM_054088|Pnpla3|116939|patatin-like phospholipase domain containing 3	BC028792|Pnpla3|116939|patatin-like phospholipase domain containing 3	AY037763|Pnpla3|116939|patatin-like phospholipase domain containing 3	AK158566|Pnpla3|116939|patatin-like phospholipase domain containing 3
mm9_v1_chr4_-_82698070_82698070	1.06286	AACACUG	AB160986|Frem1|329872|Fras1 related extracellular matrix protein 1	NM_001198811|Frem1|329872|Fras1 related extracellular matrix protein 1
mm9_v1_chr15_-_3945704_3945774	1.0616	AACACUG	AK045350|AW549877|106064|expressed sequence AW549877	AK154940|AW549877|106064|expressed sequence AW549877	NM_145930|AW549877|106064|expressed sequence AW549877
mm9_v1_chr19_-_10278231_10278434	1.0597	AACACUG	AK187493|Fen1|14156|flap structure specific endonuclease 1	BC010203|Fen1|14156|flap structure specific endonuclease 1	AK042942|Fen1|14156|flap structure specific endonuclease 1	AK153889|Fen1|14156|flap structure specific endonuclease 1	AK158431|Fen1|14156|flap structure specific endonuclease 1	AK166948|Fen1|14156|flap structure specific endonuclease 1	AK076977|Fen1|14156|flap structure specific endonuclease 1	AK161047|Fen1|14156|flap structure specific endonuclease 1	BC027295|Fen1|14156|flap structure specific endonuclease 1	AK078778|Fen1|14156|flap structure specific endonuclease 1	AK168731|Fen1|14156|flap structure specific endonuclease 1	AK046256|Fen1|14156|flap structure specific endonuclease 1	NM_007999|Fen1|14156|flap structure specific endonuclease 1
mm9_v1_chr6_+_147039596_147039596	1.05964	AACACUG	NM_001081237|Klhdc5|232539|kelch domain containing 5
mm9_v1_chr13_+_81850415_81850532	1.05885	AACACUG	AK046032|Mblac2|72852|metallo-beta-lactamase domain containing 2	NM_028372|Mblac2|72852|metallo-beta-lactamase domain containing 2	AK013594|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC107207|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC114401|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC107206|Mblac2|72852|metallo-beta-lactamase domain containing 2
mm9_v1_chr9_-_50535949_50536088	1.05556	AACACUG	AY549884|Dixdc1|330938|DIX domain containing 1	AK016205|Dixdc1|330938|DIX domain containing 1	BC048182|Dixdc1|330938|DIX domain containing 1	BC063085|Dixdc1|330938|DIX domain containing 1	AK164424|Dixdc1|330938|DIX domain containing 1	NM_178118|Dixdc1|330938|DIX domain containing 1
mm9_v1_chrX_+_99044723_99044723	1.05545	AACACUG	AK142977|Nhsl2|100042480|NHS-like 2	NM_001163610|Nhsl2|100042480|NHS-like 2
mm9_v1_chr3_-_31209216_31209240	1.05492	AACACUG	AK173217|Slc7a14|241919|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	BC061928|Slc7a14|241919|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	AK044448|Slc7a14|241919|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	NM_172861|Slc7a14|241919|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14
mm9_v1_chr7_-_59117613_59117656	1.05385	AACACUG	NM_001115087|Fancf|100040608|Fanconi anemia, complementation group F
mm9_v1_chr19_-_54019116_54019140	1.05066	AACACUG	AK010048|Bbip1|66360|BBSome interacting protein 1	NM_001195338|Bbip1|66360|BBSome interacting protein 1	NM_001195348|Bbip1|66360|BBSome interacting protein 1
mm9_v1_chr2_+_109533719_109533771	1.04726	AACACUG	AY057914|Bdnf|12064|brain derived neurotrophic factor	EF125674|Bdnf|12064|brain derived neurotrophic factor	NM_001048142|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr17_+_25321485_25321567	1.04224	AACACUG	NM_183150|BC003965|214489|cDNA sequence BC003965	BC094389|BC003965|214489|cDNA sequence BC003965	AK141327|BC003965|214489|cDNA sequence BC003965
mm9_v1_chr2_+_20211539_20211581	1.03965	AACACUG	NM_001081006|Etl4|208618|enhancer trap locus 4
mm9_v1_chr2_+_37298785_37298902	1.03944	AACACUG	NM_146121|Rabgap1|227800|RAB GTPase activating protein 1	AK031315|Rabgap1|227800|RAB GTPase activating protein 1	AK021286|Rabgap1|227800|RAB GTPase activating protein 1	BC138337|Rabgap1|227800|RAB GTPase activating protein 1
mm9_v1_chr18_-_6241497_6241528	1.03854	AACACUG	BC069920|Kif5b|16573|kinesin family member 5B	BC090841|Kif5b|16573|kinesin family member 5B	BC040800|Kif5b|16573|kinesin family member 5B	AK133535|Kif5b|16573|kinesin family member 5B	AK136307|Kif5b|16573|kinesin family member 5B	NM_008448|Kif5b|16573|kinesin family member 5B
mm9_v1_chr19_-_47089605_47089678	1.03697	AACACUG	AK162385|Nt5c2|76952|5'-nucleotidase, cytosolic II	NM_001164363|Nt5c2|76952|5'-nucleotidase, cytosolic II
mm9_v1_chr14_-_119322244_119322388	1.03283	AACACUG	AK129256|Dzip1|66573|DAZ interacting protein 1	NM_025943|Dzip1|66573|DAZ interacting protein 1
mm9_v1_chr7_-_35437859_35437910	1.03184	AACACUG	BC031749|Kctd15|233107|potassium channel tetramerisation domain containing 15	NM_146188|Kctd15|233107|potassium channel tetramerisation domain containing 15
mm9_v1_chr18_+_34380575_34380671	1.03075	AACACUG	AK042021|Apc|11789|adenomatosis polyposis coli	AK080907|Apc|11789|adenomatosis polyposis coli	NM_007462|Apc|11789|adenomatosis polyposis coli	AK046280|Apc|11789|adenomatosis polyposis coli	AK045053|Apc|11789|adenomatosis polyposis coli
mm9_v1_chr9_-_117161564_117161606	1.02609	AACACUG	BC108402|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK052196|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK032938|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK081921|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK051776|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK041098|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172122|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172123|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172124|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172126|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_178660|Rbms3|207181|RNA binding motif, single stranded interacting protein
mm9_v1_chr11_+_70658261_70658270	1.02518	AACACUG	AK134587|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	NM_019400|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1
mm9_v1_chr11_-_61393108_61393198	1.02238	AACACUG	AK195274|Epn2|13855|epsin 2	AK139793|Epn2|13855|epsin 2	BC039138|Epn2|13855|epsin 2	NM_010148|Epn2|13855|epsin 2	AK036331|Epn2|13855|epsin 2	AK173093|Epn2|13855|epsin 2	AK139234|Epn2|13855|epsin 2	AK160782|Epn2|13855|epsin 2
mm9_v1_chr2_-_25838722_25838801	1.02208	AACACUG	AK137097|Camsap1|227634|calmodulin regulated spectrin-associated protein 1	NM_001115076|Camsap1|227634|calmodulin regulated spectrin-associated protein 1
mm9_v1_chr12_+_85455277_85455306	1.01996	AACACUG	NM_028821|Dnalc1|105000|dynein, axonemal, light chain 1
mm9_v1_chr11_-_78059124_78059213	1.01828	AACACUG	BC072657|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)	AK170533|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)	U40375|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)	NM_009297|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)
mm9_v1_chr13_+_51228165_51228173	1.01713	AACACUG	AK166532|Spin1|20729|spindlin 1	AK163301|Spin1|20729|spindlin 1	AK136251|Spin1|20729|spindlin 1	NM_011462|Spin1|20729|spindlin 1	AK135847|Spin1|20729|spindlin 1	AK135933|Spin1|20729|spindlin 1	AK139899|Spin1|20729|spindlin 1	AK162171|Spin1|20729|spindlin 1	AK162195|Spin1|20729|spindlin 1	AK163308|Spin1|20729|spindlin 1	AK163382|Spin1|20729|spindlin 1	AK136233|Spin1|20729|spindlin 1	AK163293|Spin1|20729|spindlin 1	AK135816|Spin1|20729|spindlin 1	AK163263|Spin1|20729|spindlin 1	AK166528|Spin1|20729|spindlin 1	AK166677|Spin1|20729|spindlin 1	AK162258|Spin1|20729|spindlin 1
mm9_v1_chr12_+_25265583_25265583	1.01257	AACACUG	AF411211|Grhl1|195733|grainyhead-like 1 (Drosophila)	NM_145890|Grhl1|195733|grainyhead-like 1 (Drosophila)
mm9_v1_chr9_-_70504934_70505009	1.00954	AACACUG	BC058683|Fam63b|235461|family with sequence similarity 63, member B	AK046623|Fam63b|235461|family with sequence similarity 63, member B	BC049357|Fam63b|235461|family with sequence similarity 63, member B	AK046403|Fam63b|235461|family with sequence similarity 63, member B	AK035930|Fam63b|235461|family with sequence similarity 63, member B	NM_172772|Fam63b|235461|family with sequence similarity 63, member B	AK220158|Fam63b|235461|family with sequence similarity 63, member B
mm9_v1_chr17_-_30713158_30713239	1.00873	AACACUG	AK153973|Btbd9|224671|BTB (POZ) domain containing 9	NM_027060|Btbd9|224671|BTB (POZ) domain containing 9	NM_172618|Btbd9|224671|BTB (POZ) domain containing 9
mm9_v1_chr11_+_78059210_78059318	1.00387	AACACUG	BC058798|Sdf2|20316|stromal cell derived factor 2	NM_009143|Sdf2|20316|stromal cell derived factor 2
mm9_v1_chr10_+_85763156_85763226	1.00159	AACACUG	NM_011595|Timp3|21859|tissue inhibitor of metalloproteinase 3
mm9_v1_chr6_-_18464792_18464824	0.997161	AACACUG	AK028980|Cttnbp2|30785|cortactin binding protein 2	AK019384|Cttnbp2|30785|cortactin binding protein 2	BC141407|Cttnbp2|30785|cortactin binding protein 2	NM_080285|Cttnbp2|30785|cortactin binding protein 2
mm9_v1_chr10_+_82092582_82092692	0.996671	AACACUG	NM_011561|Tdg|21665|thymine DNA glycosylase	NM_172552|Tdg|21665|thymine DNA glycosylase	AK089915|Gm9855|624784|thymine DNA glycosylase pseudogene	BC085471|Tdg|21665|thymine DNA glycosylase	AK164643|Tdg|21665|thymine DNA glycosylase	AK166357|Tdg|21665|thymine DNA glycosylase	AK164090|Tdg|21665|thymine DNA glycosylase	AF069519|Gm9855|624784|thymine DNA glycosylase pseudogene	BC085470|Tdg|21665|thymine DNA glycosylase	AK053870|Tdg|21665|thymine DNA glycosylase	AK169768|Tdg|21665|thymine DNA glycosylase	BC010315|Tdg|21665|thymine DNA glycosylase
mm9_v1_chr2_+_19579607_19579745	0.994221	AACACUG	NM_027715|Otud1|71198|OTU domain containing 1
mm9_v1_chr9_+_64949242_64949341	0.989057	AACACUG	AB052620|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4	AB052621|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4	AK082162|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4	NM_020043|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4	AK079073|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4	AF176694|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4	AK143256|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4	BC126879|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4	BC126880|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4
mm9_v1_chr10_+_41530379_41530379	0.987333	AACACUG	BC100403|Sesn1|140742|sestrin 1	NM_001162908|Sesn1|140742|sestrin 1
mm9_v1_chr8_-_87956665_87956752	0.982783	AACACUG	BC050139|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK169408|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	BC027027|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK017512|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK014959|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	NM_025722|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene
mm9_v1_chr10_+_41607235_41607307	0.981384	AACACUG	NM_001013370|Sesn1|140742|sestrin 1	BC055753|Sesn1|140742|sestrin 1	AK160083|Sesn1|140742|sestrin 1	AK159531|Sesn1|140742|sestrin 1
mm9_v1_chr1_+_183282758_183282760	0.972708	AACACUG	AK013789|Cnih3|72978|cornichon homolog 3 (Drosophila)	NM_001160211|Cnih3|72978|cornichon homolog 3 (Drosophila)	NM_001160212|Cnih3|72978|cornichon homolog 3 (Drosophila)	NM_028408|Cnih3|72978|cornichon homolog 3 (Drosophila)	AK033911|Cnih3|72978|cornichon homolog 3 (Drosophila)
mm9_v1_chr6_+_77192615_77192722	0.967792	AACACUG	AK080836|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	NM_028880|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	AK014545|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	AK053345|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1
mm9_v1_chr3_+_103083215_103083215	0.965767	AACACUG	AY458590|Trim33|94093|tripartite motif-containing 33	NM_001079830|Trim33|94093|tripartite motif-containing 33	NM_053170|Trim33|94093|tripartite motif-containing 33
mm9_v1_chr19_-_28085534_28085655	0.961988	AACACUG	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr17_-_24336901_24336901	0.960819	AACACUG	AK049306|Tbc1d24|224617|TBC1 domain family, member 24	AK161054|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163852|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163853|Tbc1d24|224617|TBC1 domain family, member 24
mm9_v1_chr13_+_34967355_34967379	0.960603	AACACUG	NM_013830|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	AK165391|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm9_v1_chr9_-_58884114_58884258	0.959341	AACACUG	Y09535|Neo1|18007|neogenin	BC054540|Neo1|18007|neogenin	AK084609|Neo1|18007|neogenin	NM_001042752|Neo1|18007|neogenin	NM_008684|Neo1|18007|neogenin
mm9_v1_chr11_+_53914425_53914544	0.950652	AACACUG	NM_001136076|P4ha2|18452|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	NM_011031|P4ha2|18452|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	AK053504|P4ha2|18452|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	AK142624|P4ha2|18452|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	AK144124|P4ha2|18452|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	AK145535|P4ha2|18452|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	BC018411|P4ha2|18452|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide
mm9_v1_chr2_-_180773777_180773949	0.950375	AACACUG	AY574263|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AF225912|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK083157|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK136886|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	BC053013|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	NM_015730|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK143938|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK034228|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4
mm9_v1_chr19_+_32560258_32560494	0.944775	AACACUG	AF046908|Minpp1|17330|multiple inositol polyphosphate histidine phosphatase 1	NM_010799|Minpp1|17330|multiple inositol polyphosphate histidine phosphatase 1	AK128911|Minpp1|17330|multiple inositol polyphosphate histidine phosphatase 1	AK017558|Minpp1|17330|multiple inositol polyphosphate histidine phosphatase 1	AK042453|Minpp1|17330|multiple inositol polyphosphate histidine phosphatase 1	AK151486|Minpp1|17330|multiple inositol polyphosphate histidine phosphatase 1	AK080471|Minpp1|17330|multiple inositol polyphosphate histidine phosphatase 1	AB041574|Minpp1|17330|multiple inositol polyphosphate histidine phosphatase 1
mm9_v1_chr5_-_77544147_77544201	0.944013	AACACUG	AF492703|Hopx|74318|HOP homeobox	NM_175606|Hopx|74318|HOP homeobox	AF534182|Hopx|74318|HOP homeobox
mm9_v1_chr19_-_36131650_36131849	0.941908	AACACUG	AK138150|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	FM178515|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	FM178516|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	BC116986|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	Z23107|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	AK139197|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	NM_008315|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7
mm9_v1_chr11_+_44332426_44332513	0.93998	AACACUG	AK014408|Rnf145|74315|ring finger protein 145	NM_028862|Rnf145|74315|ring finger protein 145	AK043002|Rnf145|74315|ring finger protein 145
mm9_v1_chr2_-_35056582_35056639	0.939397	AACACUG	AK160859|Rab14|68365|RAB14, member RAS oncogene family	NM_026697|Rab14|68365|RAB14, member RAS oncogene family
mm9_v1_chr2_-_35835071_35835146	0.938671	AACACUG	AM690755|Ttll11|74410|tubulin tyrosine ligase-like family, member 11	NM_028921|Ttll11|74410|tubulin tyrosine ligase-like family, member 11	NM_029774|Ttll11|74410|tubulin tyrosine ligase-like family, member 11	AK037481|Ttll11|74410|tubulin tyrosine ligase-like family, member 11
mm9_v1_chr18_+_49992650_49992666	0.934443	AACACUG	AY590892|Dmxl1|240283|Dmx-like 1	NM_001081371|Dmxl1|240283|Dmx-like 1
mm9_v1_chr2_+_125498825_125498913	0.924203	AACACUG	AK002559|Eid1|58521|EP300 interacting inhibitor of differentiation 1	NM_025613|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK011293|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK012453|Eid1|58521|EP300 interacting inhibitor of differentiation 1	BC010712|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK077783|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK017543|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK169604|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK005258|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AL357453|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK078402|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK078409|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK148555|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK014440|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AF509968|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK078826|Eid1|58521|EP300 interacting inhibitor of differentiation 1	BC069897|Eid1|58521|EP300 interacting inhibitor of differentiation 1
mm9_v1_chr3_-_121518046_121518134	0.922241	AACACUG	BC054446|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	AK153298|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	AK004660|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	AK081952|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	AK144060|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	BC009119|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	NM_008991|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3
mm9_v1_chr14_+_79987495_79987615	0.917197	AACACUG	AK082328|Sugt1|67955|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	NM_026474|Sugt1|67955|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	AK045153|Sugt1|67955|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	AK141416|Sugt1|67955|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	AK007881|Sugt1|67955|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	AK010830|Sugt1|67955|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	AK020433|Sugt1|67955|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	AK148838|Sugt1|67955|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	BC009167|Sugt1|67955|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	AK010711|Sugt1|67955|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)
mm9_v1_chr17_+_47027553_47027615	0.913943	AACACUG	NM_178385|Tbcc|72726|tubulin-specific chaperone C
mm9_v1_chr5_-_69732915_69732947	0.912717	AACACUG	AK039167|Kctd8|243043|potassium channel tetramerisation domain containing 8	AK043351|Kctd8|243043|potassium channel tetramerisation domain containing 8	AK047519|Kctd8|243043|potassium channel tetramerisation domain containing 8	AY615967|Kctd8|243043|potassium channel tetramerisation domain containing 8	NM_175519|Kctd8|243043|potassium channel tetramerisation domain containing 8
mm9_v1_chr7_-_36539369_36539472	0.910661	AACACUG	BC059897|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK045758|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031722|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	BC050065|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK033395|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AF538322|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031345|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK034217|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	NM_178704|Dpy19l3|233115|dpy-19-like 3 (C. elegans)
mm9_v1_chr6_-_30459703_30459756	0.910528	AACACUG	AK089486|Tmem209|72649|transmembrane protein 209	AK170465|Tmem209|72649|transmembrane protein 209	BC057109|Tmem209|72649|transmembrane protein 209	NM_178625|Tmem209|72649|transmembrane protein 209	BC052187|Tmem209|72649|transmembrane protein 209	AK029366|Tmem209|72649|transmembrane protein 209	AK089962|Tmem209|72649|transmembrane protein 209	AK078544|Tmem209|72649|transmembrane protein 209	AK044877|Tmem209|72649|transmembrane protein 209	AK084222|Tmem209|72649|transmembrane protein 209
mm9_v1_chr11_-_5641147_5641184	0.902507	AACACUG	AK166495|Urgcp|72046|upregulator of cell proliferation	AK033577|Urgcp|72046|upregulator of cell proliferation	NM_178623|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr13_-_64349830_64349845	0.902074	AACACUG	AK041155|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_001122989|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chr17_-_45796257_45796257	0.901239	AACACUG	AY578330|Capn11|268958|calpain 11	NM_001013767|Capn11|268958|calpain 11
mm9_v1_chr14_+_60244117_60244148	0.900739	AACACUG	NM_145463|Shisa2|219134|shisa homolog 2 (Xenopus laevis)	AK034905|Shisa2|219134|shisa homolog 2 (Xenopus laevis)	AK087512|Shisa2|219134|shisa homolog 2 (Xenopus laevis)
mm9_v1_chr9_+_77602582_77602622	0.89684	AACACUG	AK160876|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	BC019374|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	NM_010295|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	U85414|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	U85498|Gclc|14629|glutamate-cysteine ligase, catalytic subunit
mm9_v1_chr19_-_57193391_57193513	0.894655	AACACUG	AK078723|Ablim1|226251|actin-binding LIM protein 1	AK165766|Ablim1|226251|actin-binding LIM protein 1	AK172605|Ablim1|226251|actin-binding LIM protein 1	AF404776|Ablim1|226251|actin-binding LIM protein 1	NM_001103178|Ablim1|226251|actin-binding LIM protein 1	AK008893|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr6_-_82602836_82602872	0.894586	AACACUG	BC023189|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK167631|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK010135|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK010300|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	NM_025882|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK145365|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK011595|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK160582|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)
mm9_v1_chr4_-_132833622_132833720	0.89453	AACACUG	BC037609|Tmem222|52174|transmembrane protein 222	AK079189|Tmem222|52174|transmembrane protein 222	AK017503|Tmem222|52174|transmembrane protein 222	AK160188|Tmem222|52174|transmembrane protein 222	NM_025667|Tmem222|52174|transmembrane protein 222
mm9_v1_chr8_-_80960532_80960550	0.892505	AACACUG	S68377|Pou4f2|18997|POU domain, class 4, transcription factor 2	AK084240|Pou4f2|18997|POU domain, class 4, transcription factor 2	AK087546|Pou4f2|18997|POU domain, class 4, transcription factor 2	NM_138944|Pou4f2|18997|POU domain, class 4, transcription factor 2
mm9_v1_chr6_-_113145321_113145377	0.891347	AACACUG	AK220449|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	BC085130|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	AK046437|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	NM_177763|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4
mm9_v1_chr9_-_67407509_67407509	0.891036	AACACUG	NM_001081242|Tln2|70549|talin 2
mm9_v1_chr12_-_106923394_106923487	0.887955	AACACUG	AK085790|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	AK083213|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	BC062182|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	AK086802|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	NM_029654|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)
mm9_v1_chr8_-_128016609_128016654	0.885077	AACACUG	NM_001081337|Sipa1l2|244668|signal-induced proliferation-associated 1 like 2	BC150682|Sipa1l2|244668|signal-induced proliferation-associated 1 like 2
mm9_v1_chr9_+_54765084_54765153	0.879925	AACACUG	AK085527|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK162425|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	NM_177351|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK138851|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK083218|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK142509|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK163926|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK048771|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	BC038618|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK087279|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1
mm9_v1_chr2_-_130249983_130250049	0.878571	AACACUG	AK081584|Fam113a|319513|family with sequence similarity 113, member A	AK032762|Fam113a|319513|family with sequence similarity 113, member A	AK045248|Fam113a|319513|family with sequence similarity 113, member A	AK044590|Fam113a|319513|family with sequence similarity 113, member A	AK027964|Fam113a|319513|family with sequence similarity 113, member A	AK032354|Fam113a|319513|family with sequence similarity 113, member A	AK077745|Fam113a|319513|family with sequence similarity 113, member A	AK161998|Fam113a|319513|family with sequence similarity 113, member A	AK041939|Fam113a|319513|family with sequence similarity 113, member A	AK085613|Fam113a|319513|family with sequence similarity 113, member A	NM_178762|Fam113a|319513|family with sequence similarity 113, member A	AK079521|Fam113a|319513|family with sequence similarity 113, member A
mm9_v1_chr5_+_20930720_20930881	0.875504	AACACUG	NM_177869|Fam185a|330050|family with sequence similarity 185, member A	AK030922|Fam185a|330050|family with sequence similarity 185, member A	AK076256|Fam185a|330050|family with sequence similarity 185, member A	BC055342|Fam185a|330050|family with sequence similarity 185, member A
mm9_v1_chr8_+_108160437_108160479	0.874866	AACACUG	NM_181322|Ctcf|13018|CCCTC-binding factor	U51037|Ctcf|13018|CCCTC-binding factor	BC037456|Ctcf|13018|CCCTC-binding factor	AK140164|Ctcf|13018|CCCTC-binding factor	BC009129|Ctcf|13018|CCCTC-binding factor	BC024382|Ctcf|13018|CCCTC-binding factor	BC049131|Ctcf|13018|CCCTC-binding factor	AK076192|Ctcf|13018|CCCTC-binding factor
mm9_v1_chr8_+_24780132_24780145	0.872371	AACACUG	AK140391|Zmat4|320158|zinc finger, matrin type 4	AK140413|Zmat4|320158|zinc finger, matrin type 4	NM_177086|Zmat4|320158|zinc finger, matrin type 4	AK036254|Zmat4|320158|zinc finger, matrin type 4	AK134793|Zmat4|320158|zinc finger, matrin type 4	BC065110|Zmat4|320158|zinc finger, matrin type 4	BC079657|Zmat4|320158|zinc finger, matrin type 4
mm9_v1_chr3_-_108830522_108830608	0.871196	AACACUG	NM_001163567|Fam102b|329739|family with sequence similarity 102, member B
mm9_v1_chr11_+_82577835_82577869	0.868403	AACACUG	AK008475|Zfp830|66983|zinc finger protein 830	AK132497|Zfp830|66983|zinc finger protein 830	NM_025884|Zfp830|66983|zinc finger protein 830	AK148058|Zfp830|66983|zinc finger protein 830	AK050043|Zfp830|66983|zinc finger protein 830	AK010353|Zfp830|66983|zinc finger protein 830	AK167656|Zfp830|66983|zinc finger protein 830	BC024340|Zfp830|66983|zinc finger protein 830	AK168417|Zfp830|66983|zinc finger protein 830	AK017640|Zfp830|66983|zinc finger protein 830
mm9_v1_chr5_-_77524256_77524291	0.862803	AACACUG	AK008297|Hopx|74318|HOP homeobox	AK008439|Hopx|74318|HOP homeobox	BC024546|Hopx|74318|HOP homeobox	AF492704|Hopx|74318|HOP homeobox	AK003784|Hopx|74318|HOP homeobox	NM_001159900|Hopx|74318|HOP homeobox	NM_001159901|Hopx|74318|HOP homeobox
mm9_v1_chr4_-_118130054_118130099	0.858308	AACACUG	AF360122|Mpl|17480|myeloproliferative leukemia virus oncogene	X73677|Mpl|17480|myeloproliferative leukemia virus oncogene	BC146612|Mpl|17480|myeloproliferative leukemia virus oncogene	BC101943|Mpl|17480|myeloproliferative leukemia virus oncogene	BC103513|Mpl|17480|myeloproliferative leukemia virus oncogene	BC103514|Mpl|17480|myeloproliferative leukemia virus oncogene	BC103515|Mpl|17480|myeloproliferative leukemia virus oncogene	BC146613|Mpl|17480|myeloproliferative leukemia virus oncogene	Z22649|Mpl|17480|myeloproliferative leukemia virus oncogene	AK041166|Mpl|17480|myeloproliferative leukemia virus oncogene	NM_001122949|Mpl|17480|myeloproliferative leukemia virus oncogene	NM_010823|Mpl|17480|myeloproliferative leukemia virus oncogene
mm9_v1_chr3_-_19062922_19063101	0.855489	AACACUG	AK208595|Armc1|74252|armadillo repeat containing 1	AK213606|Armc1|74252|armadillo repeat containing 1	AK144184|Armc1|74252|armadillo repeat containing 1	AK079299|Armc1|74252|armadillo repeat containing 1	AK167233|Armc1|74252|armadillo repeat containing 1	BC051067|Armc1|74252|armadillo repeat containing 1	BC021451|Armc1|74252|armadillo repeat containing 1	NM_028840|Armc1|74252|armadillo repeat containing 1	AK009402|Armc1|74252|armadillo repeat containing 1	AK082783|Armc1|74252|armadillo repeat containing 1	AK145993|Armc1|74252|armadillo repeat containing 1
mm9_v1_chr10_+_127631656_127631826	0.853532	AACACUG	BC141115|Gls2|216456|glutaminase 2 (liver, mitochondrial)	NM_001033264|Gls2|216456|glutaminase 2 (liver, mitochondrial)	AK220231|Gls2|216456|glutaminase 2 (liver, mitochondrial)	AK165896|Gls2|216456|glutaminase 2 (liver, mitochondrial)	EU770627|Gls2|216456|glutaminase 2 (liver, mitochondrial)	AK039618|Gls2|216456|glutaminase 2 (liver, mitochondrial)
mm9_v1_chr1_-_190831705_190831735	0.851851	AACACUG	BC079581|Kctd3|226823|potassium channel tetramerisation domain containing 3	BC061458|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK049362|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK034380|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK087865|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK139700|Kctd3|226823|potassium channel tetramerisation domain containing 3	NM_172650|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK033491|Kctd3|226823|potassium channel tetramerisation domain containing 3
mm9_v1_chr11_-_62602910_62602939	0.850608	AACACUG	BC038632|Zfp286|192651|zinc finger protein 286	AK031547|Zfp286|192651|zinc finger protein 286	NM_138949|Zfp286|192651|zinc finger protein 286	BC050969|Zfp286|192651|zinc finger protein 286
mm9_v1_chr2_+_158620555_158620616	0.847489	AACACUG	BC029709|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	NM_145742|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	AK156955|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	AK155482|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	AK170952|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	AK004665|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35
mm9_v1_chr5_-_52957518_52957569	0.845853	AACACUG	NM_144945|Lgi2|246316|leucine-rich repeat LGI family, member 2	AJ487515|Lgi2|246316|leucine-rich repeat LGI family, member 2
mm9_v1_chr6_-_142912908_142912971	0.845763	AACACUG	AK046188|St8sia1|20449|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	BC024821|St8sia1|20449|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	NM_011374|St8sia1|20449|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
mm9_v1_chr5_+_121262643_121262689	0.843095	AACACUG	AB067529|Oas1b|23961|2'-5' oligoadenylate synthetase 1B	AF328926|Oas1b|23961|2'-5' oligoadenylate synthetase 1B	AF418004|Oas1b|23961|2'-5' oligoadenylate synthetase 1B	AF418005|Oas1b|23961|2'-5' oligoadenylate synthetase 1B	AF418006|Oas1b|23961|2'-5' oligoadenylate synthetase 1B	AF418007|Oas1b|23961|2'-5' oligoadenylate synthetase 1B	AF418008|Oas1b|23961|2'-5' oligoadenylate synthetase 1B	AF418009|Oas1b|23961|2'-5' oligoadenylate synthetase 1B	NM_001083925|Oas1b|23961|2'-5' oligoadenylate synthetase 1B	AK080152|Oas1b|23961|2'-5' oligoadenylate synthetase 1B	BC012877|Oas1b|23961|2'-5' oligoadenylate synthetase 1B	AF466822|Oas1b|23961|2'-5' oligoadenylate synthetase 1B	AF466823|Oas1b|23961|2'-5' oligoadenylate synthetase 1B
mm9_v1_chr1_+_92895285_92895313	0.842689	AACACUG	NM_001111312|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	AK044174|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1
mm9_v1_chr11_+_68939734_68939879	0.840732	AACACUG	NM_011786|Aloxe3|23801|arachidonate lipoxygenase 3	Y14695|Aloxe3|23801|arachidonate lipoxygenase 3	BC116258|Aloxe3|23801|arachidonate lipoxygenase 3	BC116259|Aloxe3|23801|arachidonate lipoxygenase 3
mm9_v1_chr2_-_4573118_4573191	0.839506	AACACUG	AK139720|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC058631|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC004573|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC028306|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	NM_026045|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK135890|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK035073|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK135707|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)
mm9_v1_chr7_-_116651647_116651647	0.839424	AACACUG	AY572454|Trim66|330627|tripartite motif-containing 66	AY572455|Trim66|330627|tripartite motif-containing 66	NM_001170912|Trim66|330627|tripartite motif-containing 66	NM_181853|Trim66|330627|tripartite motif-containing 66
mm9_v1_chr2_-_39046224_39046253	0.838517	AACACUG	BC132485|Scai|320271|suppressor of cancer cell invasion	BC144986|Scai|320271|suppressor of cancer cell invasion	BC144987|Scai|320271|suppressor of cancer cell invasion	BC144989|Scai|320271|suppressor of cancer cell invasion	AK044772|Scai|320271|suppressor of cancer cell invasion	AK082408|Scai|320271|suppressor of cancer cell invasion	AK083280|Scai|320271|suppressor of cancer cell invasion	NM_178778|Scai|320271|suppressor of cancer cell invasion	AK163712|Scai|320271|suppressor of cancer cell invasion
mm9_v1_chr15_+_75447114_75447188	0.836631	AACACUG	NM_001044718|Zfp41|22701|zinc finger protein 41	NM_011759|Zfp41|22701|zinc finger protein 41	AK030420|Zfp41|22701|zinc finger protein 41	BC053927|Zfp41|22701|zinc finger protein 41
mm9_v1_chr4_-_106472351_106472448	0.834223	AACACUG	AK031588|Acot11|329910|acyl-CoA thioesterase 11	AF416923|Acot11|329910|acyl-CoA thioesterase 11	BC042492|Acot11|329910|acyl-CoA thioesterase 11	AK048670|Acot11|329910|acyl-CoA thioesterase 11	NM_025590|Acot11|329910|acyl-CoA thioesterase 11	AK052332|Acot11|329910|acyl-CoA thioesterase 11
mm9_v1_chr1_-_120950111_120950195	0.832092	AACACUG	BC085190|Gli2|14633|GLI-Kruppel family member GLI2	BC082604|Gli2|14633|GLI-Kruppel family member GLI2	NM_001081125|Gli2|14633|GLI-Kruppel family member GLI2
mm9_v1_chr4_-_115612507_115612530	0.830012	AACACUG	BC050912|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	AB037698|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	AF448118|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	AK141654|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	NM_001025567|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	NM_130865|Dmbx1|140477|diencephalon/mesencephalon homeobox 1
mm9_v1_chrX_+_160346948_160347157	0.828492	AACACUG	AK045558|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK047724|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK167690|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK053941|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK005223|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	BC046964|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	NM_026887|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK043776|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit
mm9_v1_chr2_+_109757803_109757808	0.819943	AACACUG	NM_172671|Lgr4|107515|leucine-rich repeat-containing G protein-coupled receptor 4
mm9_v1_chr9_-_45714959_45715007	0.816932	AACACUG	AK051527|Rnf214|235315|ring finger protein 214	NM_178709|Rnf214|235315|ring finger protein 214	AK046997|Rnf214|235315|ring finger protein 214	AK030208|Rnf214|235315|ring finger protein 214
mm9_v1_chr10_+_128185549_128185593	0.813886	AACACUG	BC049647|Wibg|78428|within bgcn homolog (Drosophila)	NM_001170869|Wibg|78428|within bgcn homolog (Drosophila)
mm9_v1_chr3_+_88639149_88639197	0.812698	AACACUG	NM_027389|Gon4l|76022|gon-4-like (C.elegans)	AK147575|Gon4l|76022|gon-4-like (C.elegans)	BC037148|Gon4l|76022|gon-4-like (C.elegans)
mm9_v1_chr18_-_49915209_49915277	0.81002	AACACUG	BC139347|Dtwd2|68857|DTW domain containing 2	BC139348|Dtwd2|68857|DTW domain containing 2	BC145608|Dtwd2|68857|DTW domain containing 2	BC145609|Dtwd2|68857|DTW domain containing 2	AK004450|Dtwd2|68857|DTW domain containing 2	AK144689|Dtwd2|68857|DTW domain containing 2	NM_001170960|Dtwd2|68857|DTW domain containing 2	NM_026854|Dtwd2|68857|DTW domain containing 2
mm9_v1_chr8_+_42325093_42325221	0.809555	AACACUG	AK133754|Pcm1|18536|pericentriolar material 1	AK011147|Pcm1|18536|pericentriolar material 1	AK141516|Pcm1|18536|pericentriolar material 1	NM_023662|Pcm1|18536|pericentriolar material 1	AF369838|Pcm1|18536|pericentriolar material 1	AB029291|Pcm1|18536|pericentriolar material 1	BC053728|Pcm1|18536|pericentriolar material 1	BC139033|Pcm1|18536|pericentriolar material 1
mm9_v1_chr5_-_103640272_103640352	0.808405	AACACUG	AK036275|Mapk10|26414|mitogen-activated protein kinase 10	BC046625|Mapk10|26414|mitogen-activated protein kinase 10	AK163206|Mapk10|26414|mitogen-activated protein kinase 10	AK076990|Mapk10|26414|mitogen-activated protein kinase 10	BC026697|Mapk10|26414|mitogen-activated protein kinase 10	AK082242|Mapk10|26414|mitogen-activated protein kinase 10	NM_001081567|Mapk10|26414|mitogen-activated protein kinase 10	NM_009158|Mapk10|26414|mitogen-activated protein kinase 10
mm9_v1_chr6_+_30351902_30351953	0.808382	AACACUG	AK172923|Klhdc10|76788|kelch domain containing 10	BC060132|Klhdc10|76788|kelch domain containing 10	NM_029742|Klhdc10|76788|kelch domain containing 10	AK039732|Klhdc10|76788|kelch domain containing 10	AK053834|Klhdc10|76788|kelch domain containing 10	AK085130|Klhdc10|76788|kelch domain containing 10
mm9_v1_chr3_-_82351881_82352006	0.801359	AACACUG	BC104490|Npy2r|18167|neuropeptide Y receptor Y2	BC104733|Npy2r|18167|neuropeptide Y receptor Y2	BC104734|Npy2r|18167|neuropeptide Y receptor Y2	AK018543|Npy2r|18167|neuropeptide Y receptor Y2	AK049892|Npy2r|18167|neuropeptide Y receptor Y2	D86238|Npy2r|18167|neuropeptide Y receptor Y2	NM_008731|Npy2r|18167|neuropeptide Y receptor Y2
mm9_v1_chr11_-_102666332_102666332	0.79975	AACACUG	AK085224|Gjc1|14615|gap junction protein, gamma 1	AK085236|Gjc1|14615|gap junction protein, gamma 1	NM_008122|Gjc1|14615|gap junction protein, gamma 1
mm9_v1_chr2_-_12340979_12341107	0.794464	AACACUG	BC027202|Fam188a|66960|family with sequence similarity 188, member A	AK002900|Fam188a|66960|family with sequence similarity 188, member A	AK143250|Fam188a|66960|family with sequence similarity 188, member A	AK010050|Fam188a|66960|family with sequence similarity 188, member A	AK049869|Fam188a|66960|family with sequence similarity 188, member A	AK009891|Fam188a|66960|family with sequence similarity 188, member A	AK049694|Fam188a|66960|family with sequence similarity 188, member A	BC002225|Fam188a|66960|family with sequence similarity 188, member A	AK075792|Fam188a|66960|family with sequence similarity 188, member A	NM_024185|Fam188a|66960|family with sequence similarity 188, member A
mm9_v1_chr8_+_14911653_14911743	0.792368	AACACUG	AK147669|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	AK051721|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	NM_001037736|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	NM_172751|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	AK054038|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	AK220332|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	BC066074|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10
mm9_v1_chr8_-_85966482_85966569	0.792246	AACACUG	NM_019708|Scoc|56367|short coiled-coil protein
mm9_v1_chrX_+_63906333_63906333	0.792129	AACACUG	BC111888|Slitrk2|245450|SLIT and NTRK-like family, member 2	BC112406|Slitrk2|245450|SLIT and NTRK-like family, member 2	NM_198863|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr13_-_81849941_81850044	0.79174	AACACUG	BC066818|Polr3g|67486|polymerase (RNA) III (DNA directed) polypeptide G	BC030063|Polr3g|67486|polymerase (RNA) III (DNA directed) polypeptide G	AK009045|Polr3g|67486|polymerase (RNA) III (DNA directed) polypeptide G	AK009876|Polr3g|67486|polymerase (RNA) III (DNA directed) polypeptide G	AK010126|Polr3g|67486|polymerase (RNA) III (DNA directed) polypeptide G	AK166165|Polr3g|67486|polymerase (RNA) III (DNA directed) polypeptide G	NM_001081176|Polr3g|67486|polymerase (RNA) III (DNA directed) polypeptide G
mm9_v1_chr11_+_121021584_121021625	0.790063	AACACUG	AF441863|Uts2r|217369|urotensin 2 receptor	NM_145440|Uts2r|217369|urotensin 2 receptor	BC125312|Uts2r|217369|urotensin 2 receptor	BC125318|Uts2r|217369|urotensin 2 receptor	AY065981|Uts2r|217369|urotensin 2 receptor
mm9_v1_chr7_-_125259660_125259706	0.789984	AACACUG	BC051205|Rps15a|267019|ribosomal protein S15A	BC054792|Rps15a|267019|ribosomal protein S15A	NM_170669|Rps15a|267019|ribosomal protein S15A	BC076563|Rps15a|267019|ribosomal protein S15A	AK152932|Rps15a|267019|ribosomal protein S15A	AK008350|Rps15a|267019|ribosomal protein S15A	AK012485|Rps15a|267019|ribosomal protein S15A	AK011514|Rps15a|267019|ribosomal protein S15A	AK012618|Rps15a|267019|ribosomal protein S15A	AK019235|Rps15a|267019|ribosomal protein S15A	AK028135|Rps15a|267019|ribosomal protein S15A	BC086885|Rps15a|267019|ribosomal protein S15A	BC087867|Rps15a|267019|ribosomal protein S15A	AK032522|Rps15a|267019|ribosomal protein S15A	AK010652|Rps15a|267019|ribosomal protein S15A
mm9_v1_chr13_+_60703261_60703571	0.789709	AACACUG	NM_029653|Dapk1|69635|death associated protein kinase 1	AY245540|Dapk1|69635|death associated protein kinase 1	AY245541|Dapk1|69635|death associated protein kinase 1	BC057317|Dapk1|69635|death associated protein kinase 1	BC060161|Dapk1|69635|death associated protein kinase 1	AK009701|Dapk1|69635|death associated protein kinase 1	AK145922|Dapk1|69635|death associated protein kinase 1	NM_134062|Dapk1|69635|death associated protein kinase 1
mm9_v1_chr11_-_106649652_106649810	0.789483	AACACUG	BC108369|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK203495|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC129873|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC129874|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC086320|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC046554|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	X65627|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC062916|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK044792|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK076018|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK088887|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK129022|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK135173|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK166045|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	NM_007840|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr4_+_57858096_57858154	0.787241	AACACUG	NM_001035532|Akap2|11641|A kinase (PRKA) anchor protein 2	NM_009649|Akap2|11641|A kinase (PRKA) anchor protein 2	AK041873|Akap2|11641|A kinase (PRKA) anchor protein 2	AK147420|Akap2|11641|A kinase (PRKA) anchor protein 2	BC003735|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr17_+_17511271_17511295	0.786754	AACACUG	BC080771|Riok2|67045|RIO kinase 2 (yeast)	NM_025934|Riok2|67045|RIO kinase 2 (yeast)
mm9_v1_chr16_+_33185137_33185252	0.777193	AACACUG	BC035278|Osbpl11|106326|oxysterol binding protein-like 11	NM_176840|Osbpl11|106326|oxysterol binding protein-like 11	BC099400|Osbpl11|106326|oxysterol binding protein-like 11
mm9_v1_chr1_+_12682510_12682540	0.776656	AACACUG	NM_001198565|Sulf1|240725|sulfatase 1	NM_001198566|Sulf1|240725|sulfatase 1	AK078756|Sulf1|240725|sulfatase 1
mm9_v1_chr7_+_13466525_13466568	0.77472	AACACUG	AK132244|Zfp128|243833|zinc finger protein 128	AK035906|Zfp128|243833|zinc finger protein 128	NM_153802|Zfp128|243833|zinc finger protein 128	AK032046|Zfp128|243833|zinc finger protein 128	BC088998|Zfp128|243833|zinc finger protein 128	BC094248|Zfp128|243833|zinc finger protein 128	AF480861|Zfp128|243833|zinc finger protein 128
mm9_v1_chrX_+_98494487_98494551	0.774683	AACACUG	NM_172932|Nlgn3|245537|neuroligin 3	AK039018|Nlgn3|245537|neuroligin 3
mm9_v1_chr16_-_62846777_62846879	0.773565	AACACUG	AK016794|Arl13b|68146|ADP-ribosylation factor-like 13B	AK020859|Arl13b|68146|ADP-ribosylation factor-like 13B	AK051159|Arl13b|68146|ADP-ribosylation factor-like 13B	AK021270|Arl13b|68146|ADP-ribosylation factor-like 13B	NM_026577|Arl13b|68146|ADP-ribosylation factor-like 13B
mm9_v1_chr7_+_30768973_30768975	0.771773	AACACUG	AK148548|Zfp568|243905|zinc finger protein 568	AK166471|Zfp568|243905|zinc finger protein 568	NM_001033355|Zfp568|243905|zinc finger protein 568	NM_001167872|Zfp568|243905|zinc finger protein 568	NM_001167873|Zfp568|243905|zinc finger protein 568	AK143471|Zfp568|243905|zinc finger protein 568
mm9_v1_chr4_+_124743933_124743973	0.767837	AACACUG	AK010794|Snip1|76793|Smad nuclear interacting protein 1	AK040571|Snip1|76793|Smad nuclear interacting protein 1	AK049254|Snip1|76793|Smad nuclear interacting protein 1	AK049318|Snip1|76793|Smad nuclear interacting protein 1	AK143801|Snip1|76793|Smad nuclear interacting protein 1	NM_175246|Snip1|76793|Smad nuclear interacting protein 1	AK078163|Snip1|76793|Smad nuclear interacting protein 1	AK132768|Snip1|76793|Smad nuclear interacting protein 1	BC064067|Snip1|76793|Smad nuclear interacting protein 1
mm9_v1_chr15_-_31297286_31297513	0.764834	AACACUG	AK089667|Ankrd33b|67434|ankyrin repeat domain 33B	AK170894|Ankrd33b|67434|ankyrin repeat domain 33B	AK017844|Ankrd33b|67434|ankyrin repeat domain 33B	AK002572|Ankrd33b|67434|ankyrin repeat domain 33B	AK012871|Ankrd33b|67434|ankyrin repeat domain 33B	AK156757|Ankrd33b|67434|ankyrin repeat domain 33B	BC100327|Ankrd33b|67434|ankyrin repeat domain 33B	NM_001164441|Ankrd33b|67434|ankyrin repeat domain 33B	NM_026153|Ankrd33b|67434|ankyrin repeat domain 33B	NM_027496|Ankrd33b|67434|ankyrin repeat domain 33B
mm9_v1_chr4_-_82666973_82667005	0.76453	AACACUG	BC138427|Frem1|329872|Fras1 related extracellular matrix protein 1	BC145274|Frem1|329872|Fras1 related extracellular matrix protein 1	AJ616838|Frem1|329872|Fras1 related extracellular matrix protein 1	NM_177863|Frem1|329872|Fras1 related extracellular matrix protein 1
mm9_v1_chrX_+_68303282_68303430	0.763289	AACACUG	AK090190|Mamld1|333639|mastermind-like domain containing 1	NM_001081354|Mamld1|333639|mastermind-like domain containing 1
mm9_v1_chr10_+_59165307_59165416	0.760845	AACACUG	AK083520|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK049521|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK050113|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK046049|Cbara1|216001|calcium binding atopy-related autoantigen 1	BC026566|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK077605|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK029884|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK052485|Cbara1|216001|calcium binding atopy-related autoantigen 1	BC018320|Cbara1|216001|calcium binding atopy-related autoantigen 1	BC023022|Cbara1|216001|calcium binding atopy-related autoantigen 1	NM_144822|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK085553|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK051470|Cbara1|216001|calcium binding atopy-related autoantigen 1
mm9_v1_chr18_+_32227377_32227461	0.759105	AACACUG	NM_173441|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK033013|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK041691|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK028247|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK163972|Iws1|73473|IWS1 homolog (S. cerevisiae)	BC068184|Iws1|73473|IWS1 homolog (S. cerevisiae)
mm9_v1_chr18_+_36953553_36953593	0.758545	AACACUG	BC024881|Zmat2|66492|zinc finger, matrin type 2	NM_025594|Zmat2|66492|zinc finger, matrin type 2	AK012091|Zmat2|66492|zinc finger, matrin type 2	BC089501|Zmat2|66492|zinc finger, matrin type 2	AK008717|Zmat2|66492|zinc finger, matrin type 2
mm9_v1_chrX_+_165233030_165233030	0.756532	AACACUG	AK164501|Arhgap6|11856|Rho GTPase activating protein 6	AK171677|Arhgap6|11856|Rho GTPase activating protein 6	NM_009707|Arhgap6|11856|Rho GTPase activating protein 6
mm9_v1_chr11_+_98724908_98724950	0.755194	AACACUG	NM_197940|Wipf2|68524|WAS/WASL interacting protein family, member 2
mm9_v1_chrX_-_20639111_20639168	0.755005	AACACUG	AK155039|Zfp182|319535|zinc finger protein 182	BC063066|Zfp182|319535|zinc finger protein 182	AK045698|Zfp182|319535|zinc finger protein 182	NM_001013387|Zfp182|319535|zinc finger protein 182	NM_001111076|Zfp182|319535|zinc finger protein 182	AK043973|Zfp182|319535|zinc finger protein 182
mm9_v1_chr17_-_51971946_51971971	0.752751	AACACUG	AK088563|Satb1|20230|special AT-rich sequence binding protein 1	AK134040|Satb1|20230|special AT-rich sequence binding protein 1	U05252|Satb1|20230|special AT-rich sequence binding protein 1	AK037740|Satb1|20230|special AT-rich sequence binding protein 1	NM_009122|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr2_+_127095942_127096024	0.752508	AACACUG	AK143699|Stard7|99138|START domain containing 7	NM_139308|Stard7|99138|START domain containing 7	BC017524|Stard7|99138|START domain containing 7	BC080747|Stard7|99138|START domain containing 7
mm9_v1_chr11_-_61668486_61668601	0.751101	AACACUG	AF145922|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	BC046778|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	BC053029|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK146620|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK122331|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK146893|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK148142|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	NM_013881|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)
mm9_v1_chr12_+_25257147_25257167	0.743887	AACACUG	NM_001161406|Grhl1|195733|grainyhead-like 1 (Drosophila)	AK167035|Grhl1|195733|grainyhead-like 1 (Drosophila)	BC037233|Grhl1|195733|grainyhead-like 1 (Drosophila)	AK076307|Grhl1|195733|grainyhead-like 1 (Drosophila)
mm9_v1_chr6_+_137683599_137683666	0.743534	AACACUG	AK147179|Strap|20901|serine/threonine kinase receptor associated protein	NM_011499|Strap|20901|serine/threonine kinase receptor associated protein	AK154158|Strap|20901|serine/threonine kinase receptor associated protein	AK075804|Strap|20901|serine/threonine kinase receptor associated protein	AF096285|Strap|20901|serine/threonine kinase receptor associated protein	AK077504|Strap|20901|serine/threonine kinase receptor associated protein	AK145971|Strap|20901|serine/threonine kinase receptor associated protein	BC141076|Strap|20901|serine/threonine kinase receptor associated protein	BC145342|Strap|20901|serine/threonine kinase receptor associated protein
mm9_v1_chr6_-_25759225_25759245	0.737889	AACACUG	AK036052|Pot1a|101185|protection of telomeres 1A	NM_133931|Pot1a|101185|protection of telomeres 1A	AK005318|Pot1a|101185|protection of telomeres 1A
mm9_v1_chr2_-_5635547_5635807	0.737396	AACACUG	AK053173|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK170123|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK170777|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	NM_177343|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK147616|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID
mm9_v1_chr5_+_36100508_36100541	0.734576	AACACUG	AK154494|Ablim2|231148|actin-binding LIM protein 2	NM_001177696|Ablim2|231148|actin-binding LIM protein 2	NM_001177697|Ablim2|231148|actin-binding LIM protein 2	NM_001177698|Ablim2|231148|actin-binding LIM protein 2	NM_001177699|Ablim2|231148|actin-binding LIM protein 2	NM_001177700|Ablim2|231148|actin-binding LIM protein 2	NM_177678|Ablim2|231148|actin-binding LIM protein 2
mm9_v1_chrX_+_7305654_7305720	0.733878	AACACUG	BC064757|Praf2|54637|PRA1 domain family 2	AK003344|Praf2|54637|PRA1 domain family 2	AK224918|Praf2|54637|PRA1 domain family 2	NM_138602|Praf2|54637|PRA1 domain family 2	AF229636|Praf2|54637|PRA1 domain family 2
mm9_v1_chr6_+_147995935_147995985	0.733719	AACACUG	AK043388|Far2|330450|fatty acyl CoA reductase 2	AK043589|Far2|330450|fatty acyl CoA reductase 2	AK137298|Far2|330450|fatty acyl CoA reductase 2	NM_178797|Far2|330450|fatty acyl CoA reductase 2	BC055759|Far2|330450|fatty acyl CoA reductase 2	AK161201|Far2|330450|fatty acyl CoA reductase 2	AK038584|Far2|330450|fatty acyl CoA reductase 2
mm9_v1_chr15_+_54402914_54402981	0.730617	AACACUG	NM_178920|Mal2|105853|mal, T-cell differentiation protein 2
mm9_v1_chr12_-_36769054_36769127	0.730277	AACACUG	BC018317|Tspan13|66109|tetraspanin 13	NM_025359|Tspan13|66109|tetraspanin 13	AK158761|Tspan13|66109|tetraspanin 13	AK167979|Tspan13|66109|tetraspanin 13	AK012571|Tspan13|66109|tetraspanin 13	AK090217|Tspan13|66109|tetraspanin 13	AK090322|Tspan13|66109|tetraspanin 13	AK165768|Tspan13|66109|tetraspanin 13	AK167495|Tspan13|66109|tetraspanin 13
mm9_v1_chr9_-_79641213_79641236	0.729718	AACACUG	AK077065|Tmem30a|69981|transmembrane protein 30A	NM_133718|Tmem30a|69981|transmembrane protein 30A
mm9_v1_chr18_-_38129384_38129452	0.728692	AACACUG	BC057367|Fchsd1|319262|FCH and double SH3 domains 1	NM_175684|Fchsd1|319262|FCH and double SH3 domains 1	BC052886|Fchsd1|319262|FCH and double SH3 domains 1	AK154732|Fchsd1|319262|FCH and double SH3 domains 1
mm9_v1_chr4_+_42930076_42930171	0.728672	AACACUG	BC057092|N28178|230085|expressed sequence N28178	NM_172690|N28178|230085|expressed sequence N28178	AK046283|N28178|230085|expressed sequence N28178	AK038528|N28178|230085|expressed sequence N28178
mm9_v1_chr8_-_72566595_72566636	0.72694	AACACUG	AK018662|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	AK039196|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	AK162318|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	AK164005|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	AK081967|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	BC125568|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	BC132139|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	BC144990|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	NM_001167939|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	NM_028993|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)
mm9_v1_chr8_-_4325051_4325113	0.724315	AACACUG	AK011870|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK080365|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK075818|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK034536|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	NM_010485|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)
mm9_v1_chrX_+_98728073_98728189	0.721576	AACACUG	AK045586|Taf1|270627|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_001081008|Taf1|270627|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK143571|Taf1|270627|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AB299229|Taf1|270627|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr17_+_87153083_87153241	0.72128	AACACUG	AK136911|Epas1|13819|endothelial PAS domain protein 1	NM_010137|Epas1|13819|endothelial PAS domain protein 1	D89787|Epas1|13819|endothelial PAS domain protein 1
mm9_v1_chr16_-_26371711_26371924	0.719842	AACACUG	CT010299|Cldn1|12737|claudin 1	EU076705|Cldn1|12737|claudin 1	BC008536|Cldn1|12737|claudin 1	AF072127|Cldn1|12737|claudin 1	AK054207|Cldn1|12737|claudin 1	BC002003|Cldn1|12737|claudin 1	AK036762|Cldn1|12737|claudin 1	AK028428|Cldn1|12737|claudin 1	AK081601|Cldn1|12737|claudin 1	AK036780|Cldn1|12737|claudin 1	AK040604|Cldn1|12737|claudin 1	NM_016674|Cldn1|12737|claudin 1
mm9_v1_chr5_+_15440508_15440728	0.71969	AACACUG	AK164580|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110843|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110844|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110845|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110846|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_009784|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	AK084101|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73483|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73484|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73485|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73486|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73487|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	BC115871|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	AK052898|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm9_v1_chr3_+_103379203_103379300	0.718722	AACACUG	NM_018800|Syt6|54524|synaptotagmin VI	BC050760|Syt6|54524|synaptotagmin VI	AB026803|Syt6|54524|synaptotagmin VI	AB026809|Syt6|54524|synaptotagmin VI	AB026810|Syt6|54524|synaptotagmin VI
mm9_v1_chr2_+_172376490_172376538	0.7164	AACACUG	NM_001159696|Tcfap2c|21420|transcription factor AP-2, gamma	AK145603|Tcfap2c|21420|transcription factor AP-2, gamma
mm9_v1_chr5_+_23293519_23293585	0.716032	AACACUG	AK005284|Rint1|72772|RAD50 interactor 1	AK028707|Rint1|72772|RAD50 interactor 1	AK013321|Rint1|72772|RAD50 interactor 1	AK133789|Rint1|72772|RAD50 interactor 1	AK034857|Rint1|72772|RAD50 interactor 1	AK135334|Rint1|72772|RAD50 interactor 1	AK144144|Rint1|72772|RAD50 interactor 1	AK136479|Rint1|72772|RAD50 interactor 1	AK036805|Rint1|72772|RAD50 interactor 1	AK160710|Rint1|72772|RAD50 interactor 1	BC065059|Rint1|72772|RAD50 interactor 1	NM_177323|Rint1|72772|RAD50 interactor 1	BC145267|Rint1|72772|RAD50 interactor 1	BC150745|Rint1|72772|RAD50 interactor 1	AK162664|Rint1|72772|RAD50 interactor 1
mm9_v1_chr2_+_107130745_107130810	0.71485	AACACUG	NM_021275|Kcna4|16492|potassium voltage-gated channel, shaker-related subfamily, member 4	AK036112|Kcna4|16492|potassium voltage-gated channel, shaker-related subfamily, member 4
mm9_v1_chr4_+_54960816_54960816	0.713166	AACACUG	NM_172867|Zfp462|242466|zinc finger protein 462
mm9_v1_chr6_+_120786207_120786296	0.712195	AACACUG	AK171256|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK148007|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK031018|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK088417|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK143457|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK132774|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK047223|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	BC029016|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	NM_153516|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK165068|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK168833|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)
mm9_v1_chr2_+_109514856_109514856	0.708904	AACACUG	AY057908|Bdnf|12064|brain derived neurotrophic factor	EF125669|Bdnf|12064|brain derived neurotrophic factor	NM_007540|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr2_-_124949149_124949396	0.702928	AACACUG	BC060946|Myef2|17876|myelin basic protein expression factor 2, repressor	AK129336|Myef2|17876|myelin basic protein expression factor 2, repressor	AK142363|Myef2|17876|myelin basic protein expression factor 2, repressor	AK143230|Myef2|17876|myelin basic protein expression factor 2, repressor	AK048404|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_001162417|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_001162418|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_010852|Myef2|17876|myelin basic protein expression factor 2, repressor	AK012133|Myef2|17876|myelin basic protein expression factor 2, repressor
mm9_v1_chr6_+_67216948_67217032	0.702092	AACACUG	AK004678|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113564|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113565|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113566|Serbp1|66870|serpine1 mRNA binding protein 1	NM_025814|Serbp1|66870|serpine1 mRNA binding protein 1	AK010860|Serbp1|66870|serpine1 mRNA binding protein 1	AK144764|Serbp1|66870|serpine1 mRNA binding protein 1	AK158095|Serbp1|66870|serpine1 mRNA binding protein 1	AK010851|Serbp1|66870|serpine1 mRNA binding protein 1	AK011051|Serbp1|66870|serpine1 mRNA binding protein 1	AK149505|Serbp1|66870|serpine1 mRNA binding protein 1	AK012390|Serbp1|66870|serpine1 mRNA binding protein 1	AK088278|Serbp1|66870|serpine1 mRNA binding protein 1	AK131990|Serbp1|66870|serpine1 mRNA binding protein 1	AK135473|Serbp1|66870|serpine1 mRNA binding protein 1	AK139670|Serbp1|66870|serpine1 mRNA binding protein 1	AK146418|Serbp1|66870|serpine1 mRNA binding protein 1	AK045190|Serbp1|66870|serpine1 mRNA binding protein 1	BC006030|Serbp1|66870|serpine1 mRNA binding protein 1	BC013665|Serbp1|66870|serpine1 mRNA binding protein 1	BC030502|Serbp1|66870|serpine1 mRNA binding protein 1
mm9_v1_chr18_+_65739883_65739883	0.701693	AACACUG	BC067032|Zfp532|328977|zinc finger protein 532	NM_207255|Zfp532|328977|zinc finger protein 532
mm9_v1_chr3_+_137880725_137880770	0.701642	AACACUG	AK009600|Adh7|11529|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	NM_009626|Adh7|11529|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	AF331802|Adh7|11529|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	AF331803|Adh7|11529|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
mm9_v1_chr7_+_120350963_120350978	0.700746	AACACUG	AK146628|Arntl|11865|aryl hydrocarbon receptor nuclear translocator-like	AK147145|Arntl|11865|aryl hydrocarbon receptor nuclear translocator-like	NM_007489|Arntl|11865|aryl hydrocarbon receptor nuclear translocator-like
mm9_v1_chr13_+_55794441_55794492	0.691908	AACACUG	AK088693|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene	BC051430|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene	NM_181278|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene
mm9_v1_chr2_-_168415690_168415866	0.691203	AACACUG	AF289078|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887582|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887588|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887594|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887600|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	NM_001136073|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	U36575|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	U36576|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	NM_010899|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	BC064006|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	AK081853|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887584|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887586|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887590|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887592|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887596|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887602|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887604|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	NM_001037177|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	AK135414|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887598|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2
mm9_v1_chr8_-_72758275_72758364	0.691116	AACACUG	BC048396|Armc6|76813|armadillo repeat containing 6	BC043070|Armc6|76813|armadillo repeat containing 6	BC055779|Armc6|76813|armadillo repeat containing 6	NM_133972|Armc6|76813|armadillo repeat containing 6	AK010815|Armc6|76813|armadillo repeat containing 6	AK081550|Armc6|76813|armadillo repeat containing 6
mm9_v1_chr1_+_129670740_129670806	0.689096	AACACUG	BC054122|Ccnt2|72949|cyclin T2	NM_028399|Ccnt2|72949|cyclin T2	AK156231|Ccnt2|72949|cyclin T2	AK154439|Ccnt2|72949|cyclin T2	AK156621|Ccnt2|72949|cyclin T2	AK152399|Ccnt2|72949|cyclin T2	AK036772|Ccnt2|72949|cyclin T2	AK013634|Ccnt2|72949|cyclin T2	AK049863|Ccnt2|72949|cyclin T2
mm9_v1_chr7_+_6683288_6683655	0.688472	AACACUG	AF229257|Usp29|57775|ubiquitin specific peptidase 29	AK142304|Usp29|57775|ubiquitin specific peptidase 29	AK084156|Usp29|57775|ubiquitin specific peptidase 29	AF227912|Usp29|57775|ubiquitin specific peptidase 29	AK038752|Usp29|57775|ubiquitin specific peptidase 29	NM_021323|Usp29|57775|ubiquitin specific peptidase 29
mm9_v1_chr8_+_127536825_127536928	0.687948	AACACUG	AF187040|Tsnax|53424|translin-associated factor X	NM_016909|Tsnax|53424|translin-associated factor X	AK159223|Tsnax|53424|translin-associated factor X
mm9_v1_chr4_-_155608927_155608999	0.687117	AACACUG	AY423764|Klhl17|231003|kelch-like 17 (Drosophila)	NM_198305|Klhl17|231003|kelch-like 17 (Drosophila)
mm9_v1_chr2_-_120557235_120557264	0.686342	AACACUG	BC117555|Cdan1|68968|congenital dyserythropoietic anemia, type I (human)	AK157271|Cdan1|68968|congenital dyserythropoietic anemia, type I (human)	NM_026891|Cdan1|68968|congenital dyserythropoietic anemia, type I (human)
mm9_v1_chr11_-_60166405_60166439	0.682747	AACACUG	AK166040|Tom1l2|216810|target of myb1-like 2 (chicken)	NM_001039092|Tom1l2|216810|target of myb1-like 2 (chicken)	NM_001039093|Tom1l2|216810|target of myb1-like 2 (chicken)	NM_153080|Tom1l2|216810|target of myb1-like 2 (chicken)
mm9_v1_chr5_+_12383165_12383165	0.680299	AACACUG	AK052671|Sema3d|108151|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	NM_028882|Sema3d|108151|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
mm9_v1_chr9_-_21602942_21603000	0.678552	AACACUG	BC010245|Kank2|235041|KN motif and ankyrin repeat domains 2	AK045492|Kank2|235041|KN motif and ankyrin repeat domains 2	BC006647|Kank2|235041|KN motif and ankyrin repeat domains 2	AK031324|Kank2|235041|KN motif and ankyrin repeat domains 2	AK049288|Kank2|235041|KN motif and ankyrin repeat domains 2	NM_145611|Kank2|235041|KN motif and ankyrin repeat domains 2
mm9_v1_chr2_+_109532592_109532697	0.678245	AACACUG	AY057913|Bdnf|12064|brain derived neurotrophic factor	EF125673|Bdnf|12064|brain derived neurotrophic factor	NM_001048141|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr9_-_50467884_50467918	0.673902	AACACUG	AK032124|Dlat|235339|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	NM_145614|Dlat|235339|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
mm9_v1_chr2_+_54288789_54288827	0.665671	AACACUG	AK035964|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	AK030726|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	AK038387|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	AK045417|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	NM_173030|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13
mm9_v1_chr9_-_108984865_108984900	0.662981	AACACUG	BC106104|Ccdc72|66167|coiled-coil domain containing 72	BC054363|Ccdc72|66167|coiled-coil domain containing 72	BC090400|Ccdc72|66167|coiled-coil domain containing 72	BC034602|Ccdc72|66167|coiled-coil domain containing 72	AK169860|Ccdc72|66167|coiled-coil domain containing 72	BC116987|Ccdc72|66167|coiled-coil domain containing 72	BC116989|Ccdc72|66167|coiled-coil domain containing 72	AK160705|Ccdc72|66167|coiled-coil domain containing 72	AK002863|Ccdc72|66167|coiled-coil domain containing 72	AK003762|Ccdc72|66167|coiled-coil domain containing 72	NM_183250|Ccdc72|66167|coiled-coil domain containing 72
mm9_v1_chr11_+_102977638_102977680	0.662872	AACACUG	AK134535|Hexim1|192231|hexamethylene bis-acetamide inducible 1	AY090614|Hexim1|192231|hexamethylene bis-acetamide inducible 1	NM_138753|Hexim1|192231|hexamethylene bis-acetamide inducible 1
mm9_v1_chr9_+_111214242_111214242	0.660664	AACACUG	AK079552|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1	NM_001164659|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1
mm9_v1_chr17_-_79135885_79135936	0.657579	AACACUG	BC090968|Strn|268980|striatin, calmodulin binding protein	NM_011500|Strn|268980|striatin, calmodulin binding protein	AK051549|Strn|268980|striatin, calmodulin binding protein
mm9_v1_chr19_-_47044056_47044056	0.655237	AACACUG	NM_001164365|Nt5c2|76952|5'-nucleotidase, cytosolic II
mm9_v1_chr12_-_17183693_17183693	0.652292	AACACUG	NM_201531|Kcnf1|382571|potassium voltage-gated channel, subfamily F, member 1
mm9_v1_chr2_-_128513089_128513155	0.650827	AACACUG	BC057201|Anapc1|17222|anaphase promoting complex subunit 1	AK149762|Anapc1|17222|anaphase promoting complex subunit 1	AK052404|Anapc1|17222|anaphase promoting complex subunit 1	AK053383|Anapc1|17222|anaphase promoting complex subunit 1	AK090134|Anapc1|17222|anaphase promoting complex subunit 1	AK054305|Anapc1|17222|anaphase promoting complex subunit 1	BC139002|Anapc1|17222|anaphase promoting complex subunit 1	BC145492|Anapc1|17222|anaphase promoting complex subunit 1	AK164804|Anapc1|17222|anaphase promoting complex subunit 1	X80169|Anapc1|17222|anaphase promoting complex subunit 1	AK077847|Anapc1|17222|anaphase promoting complex subunit 1	NM_008569|Anapc1|17222|anaphase promoting complex subunit 1
mm9_v1_chr2_+_20431673_20431673	0.64937	AACACUG	AB125594|Etl4|208618|enhancer trap locus 4	AB125595|Etl4|208618|enhancer trap locus 4	NM_029895|Etl4|208618|enhancer trap locus 4	NM_178059|Etl4|208618|enhancer trap locus 4
mm9_v1_chr5_+_23606402_23606481	0.644298	AACACUG	NM_001161800|Klhl7|52323|kelch-like 7 (Drosophila)	NM_026448|Klhl7|52323|kelch-like 7 (Drosophila)	AK083358|Klhl7|52323|kelch-like 7 (Drosophila)	AK089072|Klhl7|52323|kelch-like 7 (Drosophila)	AK012326|Klhl7|52323|kelch-like 7 (Drosophila)	BC029154|Klhl7|52323|kelch-like 7 (Drosophila)	AK082520|Klhl7|52323|kelch-like 7 (Drosophila)
mm9_v1_chr14_+_45839391_45839393	0.644225	AACACUG	AK082691|Gpr137c|70713|G protein-coupled receptor 137C	NM_027518|Gpr137c|70713|G protein-coupled receptor 137C	AK018183|Gpr137c|70713|G protein-coupled receptor 137C
mm9_v1_chrX_-_153929935_153930011	0.643375	AACACUG	AK017775|Sms|20603|spermine synthase	Y09419|Sms|20603|spermine synthase	BC046623|Sms|20603|spermine synthase	AF031486|Sms|20603|spermine synthase	AK049787|Sms|20603|spermine synthase	AK160637|Sms|20603|spermine synthase	AK149929|Sms|20603|spermine synthase	AK002687|Sms|20603|spermine synthase	AK049780|Sms|20603|spermine synthase	AK136798|Sms|20603|spermine synthase	AK011542|Sms|20603|spermine synthase	AK160659|Sms|20603|spermine synthase	NM_009214|Sms|20603|spermine synthase	AK166665|Sms|20603|spermine synthase
mm9_v1_chr3_-_101728226_101728375	0.642033	AACACUG	AK090352|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15	AK011679|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15	BC094925|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15	AK082482|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15	NM_001039371|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15
mm9_v1_chr2_+_65683823_65683911	0.639086	AACACUG	NM_153409|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	NM_178634|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	EF210820|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK039150|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK082649|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK020730|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK080761|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	BC055701|Csrnp3|77771|cysteine-serine-rich nuclear protein 3
mm9_v1_chr17_-_46968361_46968361	0.637759	AACACUG	BC151032|BC032203|210982|cDNA sequence BC032203	BC151054|BC032203|210982|cDNA sequence BC032203	NM_001100452|BC032203|210982|cDNA sequence BC032203
mm9_v1_chr6_-_48658211_48658242	0.637147	AACACUG	AK030902|Gimap6|231931|GTPase, IMAP family member 6	AK087275|Gimap6|231931|GTPase, IMAP family member 6	AF503921|Gimap6|231931|GTPase, IMAP family member 6	NM_153175|Gimap6|231931|GTPase, IMAP family member 6
mm9_v1_chr13_+_93124680_93124737	0.63695	AACACUG	AK136212|Dhfr|13361|dihydrofolate reductase	NM_010049|Dhfr|13361|dihydrofolate reductase
mm9_v1_chr1_-_176851949_176851953	0.635866	AACACUG	AB011030|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	NM_011825|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	AK142008|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm9_v1_chr13_+_90229271_90229367	0.633726	AACACUG	NM_025335|Tmem167|66074|transmembrane protein 167	AK021263|Tmem167|66074|transmembrane protein 167	AK032474|Tmem167|66074|transmembrane protein 167	AK161037|Tmem167|66074|transmembrane protein 167	AK031706|Tmem167|66074|transmembrane protein 167	AK007966|Tmem167|66074|transmembrane protein 167	AK019962|Tmem167|66074|transmembrane protein 167	AK016036|Tmem167|66074|transmembrane protein 167	AK012161|Tmem167|66074|transmembrane protein 167	AK002884|Tmem167|66074|transmembrane protein 167	AK088895|Tmem167|66074|transmembrane protein 167	AK160704|Tmem167|66074|transmembrane protein 167	AK007771|Tmem167|66074|transmembrane protein 167	AK132361|Tmem167|66074|transmembrane protein 167	BC085489|Tmem167|66074|transmembrane protein 167
mm9_v1_chr12_-_105990160_105990320	0.632973	AACACUG	BC019805|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)	AF430845|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)	NM_148948|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)
mm9_v1_chr19_+_30078279_30078291	0.632291	AACACUG	AK016450|Trpd52l3|66745|tumor protein D52-like 3	BC125314|Trpd52l3|66745|tumor protein D52-like 3	BC125316|Trpd52l3|66745|tumor protein D52-like 3	NM_025741|Trpd52l3|66745|tumor protein D52-like 3	AK016362|Trpd52l3|66745|tumor protein D52-like 3
mm9_v1_chr11_-_3814666_3814666	0.631702	AACACUG	AK039786|Slc35e4|103710|solute carrier family 35, member E4	NM_153142|Slc35e4|103710|solute carrier family 35, member E4
mm9_v1_chr9_-_110379093_110379197	0.629479	AACACUG	BC065167|Klhl18|270201|kelch-like 18 (Drosophila)	BC025563|Klhl18|270201|kelch-like 18 (Drosophila)	AK173029|Klhl18|270201|kelch-like 18 (Drosophila)	NM_177771|Klhl18|270201|kelch-like 18 (Drosophila)
mm9_v1_chr16_-_89960987_89961071	0.628676	AACACUG	AK017465|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	NM_009384|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	U05245|Tiam1|21844|T-cell lymphoma invasion and metastasis 1
mm9_v1_chr14_+_66915852_66915861	0.626899	AACACUG	NM_029979|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr19_-_23522811_23522929	0.623466	AACACUG	AK035566|Mamdc2|71738|MAM domain containing 2	NM_174857|Mamdc2|71738|MAM domain containing 2	BC042773|Mamdc2|71738|MAM domain containing 2	AK154219|Mamdc2|71738|MAM domain containing 2	AK004794|Mamdc2|71738|MAM domain containing 2
mm9_v1_chr14_+_48740495_48740543	0.621897	AACACUG	AK030564|Peli2|93834|pellino 2	AK045515|Peli2|93834|pellino 2	NM_033602|Peli2|93834|pellino 2
mm9_v1_chrX_-_159267249_159267385	0.620773	AACACUG	AK162263|Txlng|353170|taxilin gamma	BC080778|Txlng|353170|taxilin gamma	AK161561|Txlng|353170|taxilin gamma	AK031783|Txlng|353170|taxilin gamma	BC059099|Txlng|353170|taxilin gamma	BC117898|Txlng|353170|taxilin gamma	BC117899|Txlng|353170|taxilin gamma	AK030100|Txlng|353170|taxilin gamma	NM_178935|Txlng|353170|taxilin gamma	AK078477|Txlng|353170|taxilin gamma	AK044130|Txlng|353170|taxilin gamma	DQ316984|Txlng|353170|taxilin gamma	DQ320011|Txlng|353170|taxilin gamma
mm9_v1_chr7_-_139978601_139978617	0.619256	AACACUG	BC035523|Fam53b|77938|family with sequence similarity 53, member B	AK020830|Fam53b|77938|family with sequence similarity 53, member B	NM_175268|Fam53b|77938|family with sequence similarity 53, member B
mm9_v1_chr9_-_117539030_117539030	0.618705	AACACUG	AK046197|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172121|Rbms3|207181|RNA binding motif, single stranded interacting protein
mm9_v1_chr2_+_112106470_112106612	0.617171	AACACUG	BC062099|Slc12a6|107723|solute carrier family 12, member 6	NM_133649|Slc12a6|107723|solute carrier family 12, member 6
mm9_v1_chr17_-_47147441_47147496	0.61069	AACACUG	BC075642|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2	AK147445|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2	AK143202|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2	NM_001177374|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2	NM_146078|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2
mm9_v1_chr7_+_4289325_4289370	0.605436	AACACUG	AK079401|Ncr1|17086|natural cytotoxicity triggering receptor 1	BC115364|Ncr1|17086|natural cytotoxicity triggering receptor 1	NM_010746|Ncr1|17086|natural cytotoxicity triggering receptor 1	AJ223765|Ncr1|17086|natural cytotoxicity triggering receptor 1	BC042788|Ncr1|17086|natural cytotoxicity triggering receptor 1	AK172251|Ncr1|17086|natural cytotoxicity triggering receptor 1
mm9_v1_chr12_+_114424066_114424140	0.604834	AACACUG	NM_153776|Tmem121|69195|transmembrane protein 121	AK010454|Tmem121|69195|transmembrane protein 121	AF488729|Tmem121|69195|transmembrane protein 121
mm9_v1_chr19_+_23833310_23833547	0.603073	AACACUG	NM_177034|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147583|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147623|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	BC141181|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1
mm9_v1_chr2_+_29682879_29682924	0.602462	AACACUG	AK012124|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK019352|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK049227|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK049849|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	NM_026615|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK085178|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	BC026994|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK210360|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)
mm9_v1_chr9_-_26962964_26963002	0.601741	AACACUG	AJ300304|Jam3|83964|junction adhesion molecule 3	AK003326|Jam3|83964|junction adhesion molecule 3	AK013156|Jam3|83964|junction adhesion molecule 3	AK032833|Jam3|83964|junction adhesion molecule 3	NM_023277|Jam3|83964|junction adhesion molecule 3	BC024357|Jam3|83964|junction adhesion molecule 3	AK008187|Jam3|83964|junction adhesion molecule 3	AK160648|Jam3|83964|junction adhesion molecule 3
mm9_v1_chr9_+_96096690_96096766	0.601589	AACACUG	AK044784|Tfdp2|211586|transcription factor Dp 2	NM_001184706|Tfdp2|211586|transcription factor Dp 2	NM_001184708|Tfdp2|211586|transcription factor Dp 2	NM_178667|Tfdp2|211586|transcription factor Dp 2	AK029055|Tfdp2|211586|transcription factor Dp 2	AK053881|Tfdp2|211586|transcription factor Dp 2	AK162972|Tfdp2|211586|transcription factor Dp 2	AK079624|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr1_-_24594228_24594275	0.596488	AACACUG	BC118970|Col19a1|12823|collagen, type XIX, alpha 1	AB000636|Col19a1|12823|collagen, type XIX, alpha 1	AK149136|Col19a1|12823|collagen, type XIX, alpha 1	NM_007733|Col19a1|12823|collagen, type XIX, alpha 1
mm9_v1_chr7_-_150970404_150970404	0.590943	AACACUG	AK133657|Mrgpre|244238|MAS-related GPR, member E	NM_175534|Mrgpre|244238|MAS-related GPR, member E
mm9_v1_chr10_+_117578842_117578914	0.590865	AACACUG	NM_001162904|Mdm1|17245|transformed mouse 3T3 cell double minute 1	NM_001162905|Mdm1|17245|transformed mouse 3T3 cell double minute 1	NM_010785|Mdm1|17245|transformed mouse 3T3 cell double minute 1	NM_148922|Mdm1|17245|transformed mouse 3T3 cell double minute 1	AK004789|Mdm1|17245|transformed mouse 3T3 cell double minute 1	AK011769|Mdm1|17245|transformed mouse 3T3 cell double minute 1	BC052680|Mdm1|17245|transformed mouse 3T3 cell double minute 1	BC137608|Mdm1|17245|transformed mouse 3T3 cell double minute 1	BC144777|Mdm1|17245|transformed mouse 3T3 cell double minute 1
mm9_v1_chr10_+_67000613_67000625	0.590182	AACACUG	AK155585|Egr2|13654|early growth response 2	NM_010118|Egr2|13654|early growth response 2	AK153882|Egr2|13654|early growth response 2	X06746|Egr2|13654|early growth response 2
mm9_v1_chr14_-_104243379_104243389	0.589647	AACACUG	AK083415|Ednrb|13618|endothelin receptor type B	NM_001136061|Ednrb|13618|endothelin receptor type B
mm9_v1_chr5_+_151062363_151062504	0.589359	AACACUG	NM_172887|Fry|320365|furry homolog (Drosophila)
mm9_v1_chr2_+_69699618_69699738	0.589019	AACACUG	NM_001110145|Ssb|20823|Sjogren syndrome antigen B	NM_009278|Ssb|20823|Sjogren syndrome antigen B	AK088650|Ssb|20823|Sjogren syndrome antigen B	AK134864|Ssb|20823|Sjogren syndrome antigen B	AK168828|Ssb|20823|Sjogren syndrome antigen B	AK032940|Ssb|20823|Sjogren syndrome antigen B	AK017822|Ssb|20823|Sjogren syndrome antigen B	AK088370|Ssb|20823|Sjogren syndrome antigen B	AK088677|Ssb|20823|Sjogren syndrome antigen B	L00993|Ssb|20823|Sjogren syndrome antigen B	Y07951|Ssb|20823|Sjogren syndrome antigen B	AK141487|Ssb|20823|Sjogren syndrome antigen B	BC003820|Ssb|20823|Sjogren syndrome antigen B	BC106150|Ssb|20823|Sjogren syndrome antigen B
mm9_v1_chr14_+_31638767_31638861	0.588174	AACACUG	AK007740|Tmem110|69179|transmembrane protein 110	NM_028839|Tmem110|69179|transmembrane protein 110	AK009341|Tmem110|69179|transmembrane protein 110	AK076341|Tmem110|69179|transmembrane protein 110	AK149088|Tmem110|69179|transmembrane protein 110	AK155257|Tmem110|69179|transmembrane protein 110
mm9_v1_chr18_+_62112728_62112737	0.586951	AACACUG	AK048066|Sh3tc2|225608|SH3 domain and tetratricopeptide repeats 2	AK143600|Sh3tc2|225608|SH3 domain and tetratricopeptide repeats 2	NM_172628|Sh3tc2|225608|SH3 domain and tetratricopeptide repeats 2	AK052534|Sh3tc2|225608|SH3 domain and tetratricopeptide repeats 2
mm9_v1_chr5_+_28643698_28643741	0.586514	AACACUG	NM_028234|Rbm33|381626|RNA binding motif protein 33	AK014289|Rbm33|381626|RNA binding motif protein 33
mm9_v1_chr14_+_58691522_58691522	0.586016	AACACUG	AK158782|Fgf9|14180|fibroblast growth factor 9	NM_013518|Fgf9|14180|fibroblast growth factor 9
mm9_v1_chr11_+_96179580_96179580	0.5836	AACACUG	BC095947|Hoxb4|15412|homeobox B4	NM_010459|Hoxb4|15412|homeobox B4
mm9_v1_chr5_+_136514365_136514365	0.583378	AACACUG	AK052525|Upk3b|100647|uroplakin 3B	NM_175309|Upk3b|100647|uroplakin 3B
mm9_v1_chr9_-_122775060_122775123	0.582558	AACACUG	BC099930|Zfp445|235682|zinc finger protein 445	NM_173364|Zfp445|235682|zinc finger protein 445
mm9_v1_chr5_-_110877489_110877534	0.580827	AACACUG	BC059932|Fbrsl1|381668|fibrosin-like 1	NM_001142642|Fbrsl1|381668|fibrosin-like 1
mm9_v1_chr12_-_91976586_91976877	0.579093	AACACUG	AK032038|Dio2|13371|deiodinase, iodothyronine, type II	AK045607|Dio2|13371|deiodinase, iodothyronine, type II	AF177196|Dio2|13371|deiodinase, iodothyronine, type II	AF177197|Dio2|13371|deiodinase, iodothyronine, type II	AF093137|Dio2|13371|deiodinase, iodothyronine, type II	BC125383|Dio2|13371|deiodinase, iodothyronine, type II	BC125385|Dio2|13371|deiodinase, iodothyronine, type II	AF096875|Dio2|13371|deiodinase, iodothyronine, type II	NM_010050|Dio2|13371|deiodinase, iodothyronine, type II
mm9_v1_chr6_+_120314116_120314182	0.578694	AACACUG	AK041568|Kdm5a|214899|lysine (K)-specific demethylase 5A	NM_145997|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK166055|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK159079|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK144877|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK139619|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK046187|Kdm5a|214899|lysine (K)-specific demethylase 5A	BC011506|Kdm5a|214899|lysine (K)-specific demethylase 5A
mm9_v1_chr13_-_70980619_70980688	0.578584	AACACUG	AK173338|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	AK031314|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	AK134523|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	NM_172053|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	BC034739|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16
mm9_v1_chr10_+_20032269_20032343	0.576137	AACACUG	NM_001025392|Bclaf1|72567|BCL2-associated transcription factor 1	NM_001025393|Bclaf1|72567|BCL2-associated transcription factor 1	NM_153787|Bclaf1|72567|BCL2-associated transcription factor 1	AK161692|Bclaf1|72567|BCL2-associated transcription factor 1	BC086624|Bclaf1|72567|BCL2-associated transcription factor 1	AK162896|Bclaf1|72567|BCL2-associated transcription factor 1	AK141834|Bclaf1|72567|BCL2-associated transcription factor 1	AK149724|Bclaf1|72567|BCL2-associated transcription factor 1	AK150017|Bclaf1|72567|BCL2-associated transcription factor 1	AK088741|Bclaf1|72567|BCL2-associated transcription factor 1	AK011802|Bclaf1|72567|BCL2-associated transcription factor 1	BC028963|Bclaf1|72567|BCL2-associated transcription factor 1	BC034300|Bclaf1|72567|BCL2-associated transcription factor 1	BC029682|Bclaf1|72567|BCL2-associated transcription factor 1
mm9_v1_chr10_+_62383370_62383381	0.575963	AACACUG	AK030865|Slc25a16|73132|solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	NM_175194|Slc25a16|73132|solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16
mm9_v1_chrX_+_165474542_165474656	0.575601	AACACUG	AK047827|Arhgap6|11856|Rho GTPase activating protein 6	NM_178754|Arhgap6|11856|Rho GTPase activating protein 6	AK077996|Arhgap6|11856|Rho GTPase activating protein 6	AK048507|Arhgap6|11856|Rho GTPase activating protein 6	AK048162|Arhgap6|11856|Rho GTPase activating protein 6	AK170575|Arhgap6|11856|Rho GTPase activating protein 6	AK079651|Arhgap6|11856|Rho GTPase activating protein 6	AK171337|Arhgap6|11856|Rho GTPase activating protein 6
mm9_v1_chr10_+_110917672_110917672	0.574375	AACACUG	AK050375|Nap1l1|53605|nucleosome assembly protein 1-like 1	NM_001146707|Nap1l1|53605|nucleosome assembly protein 1-like 1
mm9_v1_chr2_-_37502738_37502804	0.574123	AACACUG	X84692|Strbp|20744|spermatid perinuclear RNA binding protein	NM_009261|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr17_-_33855557_33855658	0.572347	AACACUG	BC002144|March2|224703|membrane-associated ring finger (C3HC4) 2	AK053434|March2|224703|membrane-associated ring finger (C3HC4) 2	AK079234|March2|224703|membrane-associated ring finger (C3HC4) 2	AK081495|March2|224703|membrane-associated ring finger (C3HC4) 2	AK036614|March2|224703|membrane-associated ring finger (C3HC4) 2	AK039778|March2|224703|membrane-associated ring finger (C3HC4) 2	AK040163|March2|224703|membrane-associated ring finger (C3HC4) 2	NM_145486|March2|224703|membrane-associated ring finger (C3HC4) 2
mm9_v1_chr18_+_35721811_35721848	0.571512	AACACUG	NM_010771|Matr3|17184|matrin 3
mm9_v1_chr10_+_33624916_33624916	0.571181	AACACUG	BC138000|Rsph4a|212892|radial spoke head 4 homolog A (Chlamydomonas)	BC138001|Rsph4a|212892|radial spoke head 4 homolog A (Chlamydomonas)	NM_001162957|Rsph4a|212892|radial spoke head 4 homolog A (Chlamydomonas)
mm9_v1_chr14_-_49686341_49686379	0.56468	AACACUG	NM_207214|Exoc5|105504|exocyst complex component 5
mm9_v1_chr13_-_76081244_76081314	0.561232	AACACUG	BC005664|Rhobtb3|73296|Rho-related BTB domain containing 3	BC050836|Rhobtb3|73296|Rho-related BTB domain containing 3	NM_028493|Rhobtb3|73296|Rho-related BTB domain containing 3	AK129234|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr7_-_140004777_140004878	0.559463	AACACUG	AK156629|Fam53b|77938|family with sequence similarity 53, member B	AK051299|Fam53b|77938|family with sequence similarity 53, member B	NM_212473|Fam53b|77938|family with sequence similarity 53, member B
mm9_v1_chr4_-_116228531_116228547	0.559246	AACACUG	AK041960|Tmem69|230657|transmembrane protein 69	BC106178|Tmem69|230657|transmembrane protein 69	NM_177670|Tmem69|230657|transmembrane protein 69
mm9_v1_chr10_+_98725858_98725868	0.556548	AACACUG	AK088665|Dusp6|67603|dual specificity phosphatase 6	AK005062|Dusp6|67603|dual specificity phosphatase 6	AK088468|Dusp6|67603|dual specificity phosphatase 6	AK148192|Dusp6|67603|dual specificity phosphatase 6	AK159502|Dusp6|67603|dual specificity phosphatase 6	NM_026268|Dusp6|67603|dual specificity phosphatase 6	AK151126|Dusp6|67603|dual specificity phosphatase 6	AK152773|Dusp6|67603|dual specificity phosphatase 6
mm9_v1_chrX_+_98624989_98625073	0.556467	AACACUG	NM_023144|Nono|53610|non-POU-domain-containing, octamer binding protein	AK161152|Nono|53610|non-POU-domain-containing, octamer binding protein	AK169303|Nono|53610|non-POU-domain-containing, octamer binding protein	AK145179|Nono|53610|non-POU-domain-containing, octamer binding protein	AK028338|Nono|53610|non-POU-domain-containing, octamer binding protein	AK004830|Nono|53610|non-POU-domain-containing, octamer binding protein	AK169202|Nono|53610|non-POU-domain-containing, octamer binding protein	AK165855|Nono|53610|non-POU-domain-containing, octamer binding protein	BC005465|Nono|53610|non-POU-domain-containing, octamer binding protein	S64860|Nono|53610|non-POU-domain-containing, octamer binding protein	AK167297|Nono|53610|non-POU-domain-containing, octamer binding protein	AK033201|Nono|53610|non-POU-domain-containing, octamer binding protein	AK013444|Nono|53610|non-POU-domain-containing, octamer binding protein
mm9_v1_chr8_-_114378162_114378252	0.554709	AACACUG	AK160532|Cfdp1|23837|craniofacial development protein 1	BC005589|Cfdp1|23837|craniofacial development protein 1	AB010828|Cfdp1|23837|craniofacial development protein 1	NM_011801|Cfdp1|23837|craniofacial development protein 1	Y08219|Cfdp1|23837|craniofacial development protein 1	AK133989|Cfdp1|23837|craniofacial development protein 1
mm9_v1_chr3_+_106904470_106904486	0.55147	AACACUG	AK044342|Kcna2|16490|potassium voltage-gated channel, shaker-related subfamily, member 2	NM_008417|Kcna2|16490|potassium voltage-gated channel, shaker-related subfamily, member 2
mm9_v1_chr5_-_144031666_144031702	0.548473	AACACUG	NM_017467|Zfp316|54201|zinc finger protein 316
mm9_v1_chr6_-_56312803_56312803	0.547097	AACACUG	AK050499|Pde1c|18575|phosphodiesterase 1C	NM_001159960|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr2_-_69424085_69424123	0.541516	AACACUG	AK049346|Lrp2|14725|low density lipoprotein receptor-related protein 2	AK084165|Lrp2|14725|low density lipoprotein receptor-related protein 2	AK165434|Lrp2|14725|low density lipoprotein receptor-related protein 2	NM_001081088|Lrp2|14725|low density lipoprotein receptor-related protein 2
mm9_v1_chr2_+_160471623_160471632	0.53941	AACACUG	AK145538|Top1|21969|topoisomerase (DNA) I	NM_009408|Top1|21969|topoisomerase (DNA) I
mm9_v1_chr15_+_44027680_44027795	0.538117	AACACUG	AK134591|Trhr|22045|thyrotropin releasing hormone receptor	NM_013696|Trhr|22045|thyrotropin releasing hormone receptor	M59811|Trhr|22045|thyrotropin releasing hormone receptor	M94384|Trhr|22045|thyrotropin releasing hormone receptor	BC109005|Trhr|22045|thyrotropin releasing hormone receptor	BC109006|Trhr|22045|thyrotropin releasing hormone receptor	BC128269|Trhr|22045|thyrotropin releasing hormone receptor
mm9_v1_chr4_-_56878011_56878101	0.535571	AACACUG	AK082755|Ctnnal1|54366|catenin (cadherin associated protein), alpha-like 1	AK034393|Ctnnal1|54366|catenin (cadherin associated protein), alpha-like 1	BC050070|Ctnnal1|54366|catenin (cadherin associated protein), alpha-like 1	AF006071|Ctnnal1|54366|catenin (cadherin associated protein), alpha-like 1	NM_018761|Ctnnal1|54366|catenin (cadherin associated protein), alpha-like 1
mm9_v1_chr15_+_99532698_99532771	0.535164	AACACUG	NM_031842|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC059921|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	M25773|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	U66620|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC079839|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr1_+_24685377_24685468	0.534071	AACACUG	NM_026719|Lmbrd1|68421|LMBR1 domain containing 1	BC039053|Lmbrd1|68421|LMBR1 domain containing 1
mm9_v1_chr10_+_75495352_75495380	0.534017	AACACUG	NM_177475|Zfp280b|64453|zinc finger protein 280B
mm9_v1_chr2_+_14976877_14977152	0.533648	AACACUG	AK042200|Arl5b|75869|ADP-ribosylation factor-like 5B	AK040422|Arl5b|75869|ADP-ribosylation factor-like 5B	BC066810|Arl5b|75869|ADP-ribosylation factor-like 5B	AK041237|Arl5b|75869|ADP-ribosylation factor-like 5B	AK053731|Arl5b|75869|ADP-ribosylation factor-like 5B	NM_029466|Arl5b|75869|ADP-ribosylation factor-like 5B	AK164341|Arl5b|75869|ADP-ribosylation factor-like 5B	AK016359|Arl5b|75869|ADP-ribosylation factor-like 5B
mm9_v1_chr6_+_117118552_117118673	0.532611	AACACUG	NM_001012477|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	NM_013655|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	NM_021704|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK157553|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK045092|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK075596|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D43804|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D43805|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	L12029|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	L12030|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC046827|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC006640|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC020297|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC029335|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D21072|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	S74318|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	CT010389|Cxcl12|20315|chemokine (C-X-C motif) ligand 12
mm9_v1_chr4_+_154865439_154865649	0.53156	AACACUG	NM_001160016|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	NM_001160017|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	NM_008142|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK156101|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	BC013058|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK163844|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr5_-_123350242_123350397	0.530484	AACACUG	AK031626|Kdm2b|30841|lysine (K)-specific demethylase 2B	BC057622|Kdm2b|30841|lysine (K)-specific demethylase 2B	NM_013910|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr9_+_86360760_86360843	0.529896	AACACUG	NM_177208|Dopey1|320615|dopey family member 1	AK054511|Dopey1|320615|dopey family member 1	AK082462|Dopey1|320615|dopey family member 1	AK044820|Dopey1|320615|dopey family member 1	AK052544|Dopey1|320615|dopey family member 1	AK045873|Dopey1|320615|dopey family member 1
mm9_v1_chr1_+_74200562_74200594	0.527748	AACACUG	AK158234|Cxcr2|12765|chemokine (C-X-C motif) receptor 2	NM_009909|Cxcr2|12765|chemokine (C-X-C motif) receptor 2	D17630|Cxcr2|12765|chemokine (C-X-C motif) receptor 2	BC051677|Cxcr2|12765|chemokine (C-X-C motif) receptor 2
mm9_v1_chr12_+_25336138_25336389	0.52667	AACACUG	AK038397|Klf11|194655|Kruppel-like factor 11	AK050156|Klf11|194655|Kruppel-like factor 11	NM_178357|Klf11|194655|Kruppel-like factor 11	BC060642|Klf11|194655|Kruppel-like factor 11	AK161233|Klf11|194655|Kruppel-like factor 11	AK082838|Klf11|194655|Kruppel-like factor 11	AK036618|Klf11|194655|Kruppel-like factor 11	AK089044|Klf11|194655|Kruppel-like factor 11	AK084913|Klf11|194655|Kruppel-like factor 11	AK085319|Klf11|194655|Kruppel-like factor 11	AK054170|Klf11|194655|Kruppel-like factor 11	AJ459773|Klf11|194655|Kruppel-like factor 11
mm9_v1_chr4_-_141795288_141795317	0.524314	AACACUG	AK018497|9030409G11Rik|71529|RIKEN cDNA 9030409G11 gene	AK052809|9030409G11Rik|71529|RIKEN cDNA 9030409G11 gene	NM_001109685|9030409G11Rik|71529|RIKEN cDNA 9030409G11 gene
mm9_v1_chr1_-_84931657_84931708	0.522845	AACACUG	BC023456|Slc16a14|71781|solute carrier family 16 (monocarboxylic acid transporters), member 14	NM_027921|Slc16a14|71781|solute carrier family 16 (monocarboxylic acid transporters), member 14	AK049846|Slc16a14|71781|solute carrier family 16 (monocarboxylic acid transporters), member 14
mm9_v1_chr1_-_82287990_82288082	0.520701	AACACUG	AK045317|Irs1|16367|insulin receptor substrate 1	NM_010570|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr19_+_10116001_10116070	0.516419	AACACUG	NM_021890|Fads3|60527|fatty acid desaturase 3	AK090042|Fads3|60527|fatty acid desaturase 3	AK172509|Fads3|60527|fatty acid desaturase 3
mm9_v1_chr11_-_23565843_23565958	0.514872	AACACUG	AF329877|Pex13|72129|peroxisomal biogenesis factor 13	AJ304506|Pex13|72129|peroxisomal biogenesis factor 13	AK087918|Pex13|72129|peroxisomal biogenesis factor 13	AK153438|Pex13|72129|peroxisomal biogenesis factor 13	AK031975|Pex13|72129|peroxisomal biogenesis factor 13	AK011355|Pex13|72129|peroxisomal biogenesis factor 13	AK029099|Pex13|72129|peroxisomal biogenesis factor 13	AK029336|Pex13|72129|peroxisomal biogenesis factor 13	AK031710|Pex13|72129|peroxisomal biogenesis factor 13	NM_023651|Pex13|72129|peroxisomal biogenesis factor 13	BC023683|Pex13|72129|peroxisomal biogenesis factor 13	AK169148|Pex13|72129|peroxisomal biogenesis factor 13
mm9_v1_chr14_+_8912826_8912868	0.508295	AACACUG	NM_025938|Rpp14|67053|ribonuclease P 14 subunit (human)
mm9_v1_chr10_-_116813919_116814033	0.506737	AACACUG	AK048615|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK046856|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK168764|Cpsf6|432508|cleavage and polyadenylation specific factor 6	BC068133|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK049749|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK077684|Cpsf6|432508|cleavage and polyadenylation specific factor 6	NM_001013391|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chr3_+_68673489_68673528	0.504792	AACACUG	NM_001167996|1110032F04Rik|68725|RIKEN cDNA 1110032F04 gene
mm9_v1_chr2_+_165818136_165818143	0.503569	AACACUG	NM_008679|Ncoa3|17979|nuclear receptor coactivator 3
mm9_v1_chr17_+_37079995_37080032	0.502692	AACACUG	BC132405|Rnf39|386454|ring finger protein 39	BC145677|Rnf39|386454|ring finger protein 39	NM_001099632|Rnf39|386454|ring finger protein 39
mm9_v1_chr16_+_38902431_38902466	0.499394	AACACUG	BC057555|Igsf11|207683|immunoglobulin superfamily, member 11	NM_170599|Igsf11|207683|immunoglobulin superfamily, member 11
mm9_v1_chr10_-_25798768_25798857	0.496353	AACACUG	AK048673|Tmem200a|77220|transmembrane protein 200A	AK173299|Tmem200a|77220|transmembrane protein 200A	NM_029881|Tmem200a|77220|transmembrane protein 200A
mm9_v1_chr10_-_31329530_31329530	0.494423	AACACUG	NM_001146349|Rnf217|268291|ring finger protein 217
mm9_v1_chr5_+_138526303_138526341	0.492511	AACACUG	NM_029869|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	NM_133906|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK036807|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK031759|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020355|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK154831|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020039|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK054323|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1
mm9_v1_chr1_-_145851257_145851282	0.490063	AACACUG	AF432916|Rgs2|19735|regulator of G-protein signaling 2	BC023001|Rgs2|19735|regulator of G-protein signaling 2	AF215668|Rgs2|19735|regulator of G-protein signaling 2	U67187|Rgs2|19735|regulator of G-protein signaling 2	AK029310|Rgs2|19735|regulator of G-protein signaling 2	AK031603|Rgs2|19735|regulator of G-protein signaling 2	AK077922|Rgs2|19735|regulator of G-protein signaling 2	AK162276|Rgs2|19735|regulator of G-protein signaling 2	NM_009061|Rgs2|19735|regulator of G-protein signaling 2
mm9_v1_chr7_-_3169082_3169203	0.489579	AACACUG	BC050126|AU018091|245128|expressed sequence AU018091	AB201954|AU018091|245128|expressed sequence AU018091	BC080735|AU018091|245128|expressed sequence AU018091	NM_001004153|AU018091|245128|expressed sequence AU018091
mm9_v1_chr11_+_6191599_6191621	0.489331	AACACUG	AK147289|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	NM_010956|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	AK169286|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)
mm9_v1_chrX_-_101176600_101176631	0.489321	AACACUG	AK013207|Rlim|19820|ring finger protein, LIM domain interacting	AK029295|Rlim|19820|ring finger protein, LIM domain interacting	AK163276|Rlim|19820|ring finger protein, LIM domain interacting	NM_011276|Rlim|19820|ring finger protein, LIM domain interacting
mm9_v1_chr19_-_59420234_59420350	0.484926	AACACUG	AK145020|Pdzd8|107368|PDZ domain containing 8	NM_001033222|Pdzd8|107368|PDZ domain containing 8
mm9_v1_chr8_+_47254909_47254909	0.484559	AACACUG	BC058092|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	NM_025747|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene
mm9_v1_chr12_-_40763924_40763965	0.481676	AACACUG	BC029234|Arl4a|11861|ADP-ribosylation factor-like 4A	BC003725|Arl4a|11861|ADP-ribosylation factor-like 4A	AK168618|Arl4a|11861|ADP-ribosylation factor-like 4A	AK048606|Arl4a|11861|ADP-ribosylation factor-like 4A	AK137751|Arl4a|11861|ADP-ribosylation factor-like 4A	NM_007487|Arl4a|11861|ADP-ribosylation factor-like 4A
mm9_v1_chr4_+_149656024_149656024	0.481104	AACACUG	NM_001085492|Rere|68703|arginine glutamic acid dipeptide (RE) repeats
mm9_v1_chr14_+_120877548_120877707	0.479157	AACACUG	AK140318|Rap2a|76108|RAS related protein 2a	BC067194|Rap2a|76108|RAS related protein 2a	BC049084|Rap2a|76108|RAS related protein 2a	BC053003|Rap2a|76108|RAS related protein 2a	NM_029519|Rap2a|76108|RAS related protein 2a	AK018024|Rap2a|76108|RAS related protein 2a
mm9_v1_chrX_-_39265047_39265129	0.478682	AACACUG	AK140950|Thoc2|331401|THO complex 2	AK138023|Thoc2|331401|THO complex 2	NM_001033422|Thoc2|331401|THO complex 2	AK137966|Thoc2|331401|THO complex 2
mm9_v1_chr2_+_90744878_90745017	0.477392	AACACUG	BC025103|Kbtbd4|67136|kelch repeat and BTB (POZ) domain containing 4	AK010998|Kbtbd4|67136|kelch repeat and BTB (POZ) domain containing 4	NM_025991|Kbtbd4|67136|kelch repeat and BTB (POZ) domain containing 4	AK014373|Kbtbd4|67136|kelch repeat and BTB (POZ) domain containing 4
mm9_v1_chr5_-_121245511_121245538	0.475999	AACACUG	AY055830|Oas1e|231699|2'-5' oligoadenylate synthetase 1E	AY055831|Oas1e|231699|2'-5' oligoadenylate synthetase 1E	AB067531|Oas1e|231699|2'-5' oligoadenylate synthetase 1E	BC053721|Oas1e|231699|2'-5' oligoadenylate synthetase 1E	BC094918|Oas1e|231699|2'-5' oligoadenylate synthetase 1E	BC108956|Oas1e|231699|2'-5' oligoadenylate synthetase 1E	AK087823|Oas1e|231699|2'-5' oligoadenylate synthetase 1E	NM_145210|Oas1e|231699|2'-5' oligoadenylate synthetase 1E
mm9_v1_chr8_-_126506977_126507021	0.475307	AACACUG	BC046818|Abcb10|56199|ATP-binding cassette, sub-family B (MDR/TAP), member 10	BC053020|Abcb10|56199|ATP-binding cassette, sub-family B (MDR/TAP), member 10	BC054793|Abcb10|56199|ATP-binding cassette, sub-family B (MDR/TAP), member 10	NM_019552|Abcb10|56199|ATP-binding cassette, sub-family B (MDR/TAP), member 10
mm9_v1_chr6_-_30643681_30643723	0.467392	AACACUG	BC031892|Tsga14|83922|testis specific gene A14	NM_031998|Tsga14|83922|testis specific gene A14	AK161461|Tsga14|83922|testis specific gene A14	AK166974|Tsga14|83922|testis specific gene A14	AK019270|Tsga14|83922|testis specific gene A14	AK132495|Tsga14|83922|testis specific gene A14	AJ278891|Tsga14|83922|testis specific gene A14	AK006059|Tsga14|83922|testis specific gene A14	AK170213|Tsga14|83922|testis specific gene A14
mm9_v1_chr2_-_27330917_27330977	0.465337	AACACUG	NM_023336|Brd3|67382|bromodomain containing 3
mm9_v1_chr11_-_58977197_58977301	0.464081	AACACUG	AK172525|A230051G13Rik|216792|RIKEN cDNA A230051G13 gene	AK038625|A230051G13Rik|216792|RIKEN cDNA A230051G13 gene	AK133203|A230051G13Rik|216792|RIKEN cDNA A230051G13 gene	NM_173785|A230051G13Rik|216792|RIKEN cDNA A230051G13 gene	BC094909|A230051G13Rik|216792|RIKEN cDNA A230051G13 gene
mm9_v1_chrX_+_71574403_71574439	0.463181	AACACUG	NM_008883|Plxna3|18846|plexin A3	BC093482|Plxna3|18846|plexin A3	D86950|Plxna3|18846|plexin A3
mm9_v1_chr5_-_91831834_91832019	0.462857	AACACUG	AK050206|Btc|12223|betacellulin, epidermal growth factor family member	L08394|Btc|12223|betacellulin, epidermal growth factor family member	AK046658|Btc|12223|betacellulin, epidermal growth factor family member	BC119152|Btc|12223|betacellulin, epidermal growth factor family member	BC119154|Btc|12223|betacellulin, epidermal growth factor family member	BC144906|Btc|12223|betacellulin, epidermal growth factor family member	AK076272|Btc|12223|betacellulin, epidermal growth factor family member	NM_007568|Btc|12223|betacellulin, epidermal growth factor family member	AK164633|Btc|12223|betacellulin, epidermal growth factor family member
mm9_v1_chrX_+_72661966_72662056	0.46131	AACACUG	NM_001166457|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	NM_001166459|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	NM_145956|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	S68022|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK149844|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK028483|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK030736|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	BC021313|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK038919|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK011876|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	BC048179|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3
mm9_v1_chr14_-_61979128_61979283	0.460239	AACACUG	AK019140|Ebpl|68177|emopamil binding protein-like	AK044618|Ebpl|68177|emopamil binding protein-like	AF243434|Ebpl|68177|emopamil binding protein-like	AK011237|Ebpl|68177|emopamil binding protein-like	AK163371|Ebpl|68177|emopamil binding protein-like	AK032534|Ebpl|68177|emopamil binding protein-like	BC027422|Ebpl|68177|emopamil binding protein-like	AK019963|Ebpl|68177|emopamil binding protein-like	NM_026598|Ebpl|68177|emopamil binding protein-like
mm9_v1_chrX_+_35542969_35543017	0.459215	AACACUG	NM_001079513|Zbtb33|56805|zinc finger and BTB domain containing 33	NM_020256|Zbtb33|56805|zinc finger and BTB domain containing 33	AK087417|Zbtb33|56805|zinc finger and BTB domain containing 33	AK089423|Zbtb33|56805|zinc finger and BTB domain containing 33	AF097416|Zbtb33|56805|zinc finger and BTB domain containing 33
mm9_v1_chr6_+_95067873_95067899	0.459164	AACACUG	AK142080|Kbtbd8|243574|kelch repeat and BTB (POZ) domain containing 8	NM_001008785|Kbtbd8|243574|kelch repeat and BTB (POZ) domain containing 8	NM_001102670|Kbtbd8|243574|kelch repeat and BTB (POZ) domain containing 8
mm9_v1_chr17_-_51951378_51951378	0.458435	AACACUG	AK158518|Satb1|20230|special AT-rich sequence binding protein 1	NM_001163630|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr9_+_72380046_72380064	0.457513	AACACUG	AK090370|Rfx7|319758|regulatory factor X, 7	NM_001033536|Rfx7|319758|regulatory factor X, 7	AK144999|Rfx7|319758|regulatory factor X, 7
mm9_v1_chr1_-_44175585_44175667	0.45277	AACACUG	BC023141|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK079701|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK007835|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK035391|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK053315|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK035899|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	NM_023645|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK077468|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK170300|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1
mm9_v1_chr19_+_45005608_45005655	0.452154	AACACUG	NM_001081225|Fam178a|226151|family with sequence similarity 178, member A	AK031688|Fam178a|226151|family with sequence similarity 178, member A	AK147588|Fam178a|226151|family with sequence similarity 178, member A	AK020064|Fam178a|226151|family with sequence similarity 178, member A	AK045983|Fam178a|226151|family with sequence similarity 178, member A
mm9_v1_chr7_-_138553991_138554026	0.450899	AACACUG	BC048183|Ikzf5|67143|IKAROS family zinc finger 5	BC058537|Ikzf5|67143|IKAROS family zinc finger 5	NM_175115|Ikzf5|67143|IKAROS family zinc finger 5	AK153883|Ikzf5|67143|IKAROS family zinc finger 5	AK033716|Ikzf5|67143|IKAROS family zinc finger 5	BC089455|Ikzf5|67143|IKAROS family zinc finger 5	AK169384|Ikzf5|67143|IKAROS family zinc finger 5
mm9_v1_chr2_+_172375092_172375143	0.450838	AACACUG	NM_009335|Tcfap2c|21420|transcription factor AP-2, gamma	X94694|Tcfap2c|21420|transcription factor AP-2, gamma	AK145166|Tcfap2c|21420|transcription factor AP-2, gamma
mm9_v1_chr10_+_66590005_66590005	0.450796	AACACUG	NM_207221|Jmjd1c|108829|jumonji domain containing 1C
mm9_v1_chr5_+_77269623_77269643	0.450667	AACACUG	AK030106|C530008M17Rik|320827|RIKEN cDNA C530008M17 gene	NM_001163793|C530008M17Rik|320827|RIKEN cDNA C530008M17 gene	AK015929|C530008M17Rik|320827|RIKEN cDNA C530008M17 gene
mm9_v1_chr10_-_116387419_116387512	0.450312	AACACUG	BC080289|Rab3ip|216363|RAB3A interacting protein	NM_001003950|Rab3ip|216363|RAB3A interacting protein	AK152122|Rab3ip|216363|RAB3A interacting protein
mm9_v1_chr9_-_44773594_44773682	0.448878	AACACUG	BC025043|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028721|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC006649|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC021406|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028850|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK172893|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	NM_145400|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)
mm9_v1_chr15_+_32174546_32174624	0.447136	AACACUG	AK143026|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK045236|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	NM_009154|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK031231|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK054256|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK165206|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK039101|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK157706|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK141612|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
mm9_v1_chr13_+_74487763_74487789	0.446362	AACACUG	AK164539|Ccdc127|67433|coiled-coil domain containing 127	NM_001168658|Ccdc127|67433|coiled-coil domain containing 127	NM_001168659|Ccdc127|67433|coiled-coil domain containing 127	NM_024201|Ccdc127|67433|coiled-coil domain containing 127	AK170932|Ccdc127|67433|coiled-coil domain containing 127	AK002564|Ccdc127|67433|coiled-coil domain containing 127
mm9_v1_chr1_-_137327006_137327084	0.443334	AACACUG	AJ309238|Ipo9|226432|importin 9	AF273672|Ipo9|226432|importin 9	AF273673|Ipo9|226432|importin 9	AK036687|Ipo9|226432|importin 9	BC098508|Ipo9|226432|importin 9	BC056469|Ipo9|226432|importin 9	BC079546|Ipo9|226432|importin 9	NM_153774|Ipo9|226432|importin 9
mm9_v1_chr12_-_52930506_52930535	0.44162	AACACUG	AK172326|Hectd1|207304|HECT domain containing 1	NM_144788|Hectd1|207304|HECT domain containing 1
mm9_v1_chr1_-_162281701_162281701	0.441048	AACACUG	AK147634|Rabgap1l|29809|RAB GTPase activating protein 1-like	NM_001038621|Rabgap1l|29809|RAB GTPase activating protein 1-like
mm9_v1_chr11_+_35582969_35582996	0.440803	AACACUG	AK039865|Pank3|211347|pantothenate kinase 3	NM_145962|Pank3|211347|pantothenate kinase 3
mm9_v1_chr2_-_34610751_34610751	0.439519	AACACUG	BC060123|Gapvd1|66691|GTPase activating protein and VPS9 domains 1	NM_025709|Gapvd1|66691|GTPase activating protein and VPS9 domains 1
mm9_v1_chr19_+_44368165_44368165	0.439333	AACACUG	AK147406|Scd2|20250|stearoyl-Coenzyme A desaturase 2	NM_009128|Scd2|20250|stearoyl-Coenzyme A desaturase 2
mm9_v1_chrX_+_69062091_69062188	0.437902	AACACUG	NM_001081356|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK049488|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK138582|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK011632|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK008848|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK045401|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK164163|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AJ748652|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	BC094639|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK049296|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	BC028317|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
mm9_v1_chr3_-_115956312_115956401	0.436359	AACACUG	BC029939|Gpr88|64378|G-protein coupled receptor 88	AB042408|Gpr88|64378|G-protein coupled receptor 88	NM_022427|Gpr88|64378|G-protein coupled receptor 88
mm9_v1_chrX_+_91969907_91969907	0.434143	AACACUG	NM_001081473|Zxdb|668166|zinc finger, X-linked, duplicated B
mm9_v1_chr8_+_13869640_13869740	0.433383	AACACUG	NM_181854|Zfp828|101994|zinc finger protein 828	AK132164|Zfp828|101994|zinc finger protein 828	AK170835|Zfp828|101994|zinc finger protein 828	AK139963|Zfp828|101994|zinc finger protein 828	AK133990|Zfp828|101994|zinc finger protein 828	BC028991|Zfp828|101994|zinc finger protein 828	AK129444|Zfp828|101994|zinc finger protein 828
mm9_v1_chr14_-_104242892_104242969	0.43236	AACACUG	U32329|Ednrb|13618|endothelin receptor type B	AK085165|Ednrb|13618|endothelin receptor type B	AK076426|Ednrb|13618|endothelin receptor type B	AK085532|Ednrb|13618|endothelin receptor type B	NM_007904|Ednrb|13618|endothelin receptor type B
mm9_v1_chr11_+_74711572_74711627	0.431792	AACACUG	AK030545|Tsr1|104662|TSR1, 20S rRNA accumulation, homolog (yeast)	NM_177325|Tsr1|104662|TSR1, 20S rRNA accumulation, homolog (yeast)	AK165662|Tsr1|104662|TSR1, 20S rRNA accumulation, homolog (yeast)	AK154063|Tsr1|104662|TSR1, 20S rRNA accumulation, homolog (yeast)	AK134365|Tsr1|104662|TSR1, 20S rRNA accumulation, homolog (yeast)	BC031531|Tsr1|104662|TSR1, 20S rRNA accumulation, homolog (yeast)	AK129350|Tsr1|104662|TSR1, 20S rRNA accumulation, homolog (yeast)
mm9_v1_chrX_+_70232662_70232703	0.431509	AACACUG	NM_001109043|Zfp185|22673|zinc finger protein 185	NM_009549|Zfp185|22673|zinc finger protein 185	AK048188|Zfp185|22673|zinc finger protein 185	EF494744|Zfp185|22673|zinc finger protein 185
mm9_v1_chr16_-_20426357_20426468	0.429732	AACACUG	BC042581|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	AB019003|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	BC090629|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	BC061132|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	NM_013790|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	NM_176839|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm9_v1_chr12_-_36219651_36219745	0.429327	AACACUG	AK153678|Ahr|11622|aryl-hydrocarbon receptor	NM_013464|Ahr|11622|aryl-hydrocarbon receptor	AK155380|Ahr|11622|aryl-hydrocarbon receptor
mm9_v1_chr4_-_134409254_134409295	0.428378	AACACUG	AY846873|Tmem57|66146|transmembrane protein 57	AY846874|Tmem57|66146|transmembrane protein 57	NM_025382|Tmem57|66146|transmembrane protein 57
mm9_v1_chr5_-_151468105_151468189	0.427613	AACACUG	AK038740|N4bp2l2|381695|NEDD4 binding protein 2-like 2	BC037393|N4bp2l2|381695|NEDD4 binding protein 2-like 2	NM_201369|N4bp2l2|381695|NEDD4 binding protein 2-like 2
mm9_v1_chr12_-_59370171_59370244	0.427584	AACACUG	BC019452|Clec14a|66864|C-type lectin domain family 14, member a	AK014681|Clec14a|66864|C-type lectin domain family 14, member a	NM_025809|Clec14a|66864|C-type lectin domain family 14, member a
mm9_v1_chr8_-_122099088_122099101	0.426984	AACACUG	NM_175185|Hsdl1|72552|hydroxysteroid dehydrogenase like 1
mm9_v1_chr1_+_12708582_12708625	0.422582	AACACUG	AK037389|Sulf1|240725|sulfatase 1	AY101178|Sulf1|240725|sulfatase 1	BC034547|Sulf1|240725|sulfatase 1	BC049276|Sulf1|240725|sulfatase 1	NM_172294|Sulf1|240725|sulfatase 1
mm9_v1_chr12_-_82633781_82633909	0.420806	AACACUG	AY138960|Synj2bp|24071|synaptojanin 2 binding protein	BC027433|Synj2bp|24071|synaptojanin 2 binding protein	AK013474|Synj2bp|24071|synaptojanin 2 binding protein	AK163362|Synj2bp|24071|synaptojanin 2 binding protein	AK008254|Synj2bp|24071|synaptojanin 2 binding protein	AY566156|Synj2bp|24071|synaptojanin 2 binding protein	AK008054|Synj2bp|24071|synaptojanin 2 binding protein	AK078422|Synj2bp|24071|synaptojanin 2 binding protein	AK030379|Synj2bp|24071|synaptojanin 2 binding protein	AK033514|Synj2bp|24071|synaptojanin 2 binding protein	NM_025292|Synj2bp|24071|synaptojanin 2 binding protein
mm9_v1_chr6_-_50332835_50332835	0.418092	AACACUG	AK004768|Osbpl3|71720|oxysterol binding protein-like 3	AK037114|Osbpl3|71720|oxysterol binding protein-like 3	NM_027881|Osbpl3|71720|oxysterol binding protein-like 3
mm9_v1_chr7_+_30553570_30553676	0.417479	AACACUG	AK145426|Zfp84|74352|zinc finger protein 84	NM_023750|Zfp84|74352|zinc finger protein 84	AK014610|Zfp84|74352|zinc finger protein 84	AK158422|Zfp84|74352|zinc finger protein 84	BC008540|Zfp84|74352|zinc finger protein 84	AK046223|Zfp84|74352|zinc finger protein 84	AK083748|Zfp84|74352|zinc finger protein 84	AK034259|Zfp84|74352|zinc finger protein 84
mm9_v1_chr19_+_57685498_57685542	0.413013	AACACUG	AK147492|Atrnl1|226255|attractin like 1	NM_181415|Atrnl1|226255|attractin like 1	AY688677|Atrnl1|226255|attractin like 1	AK172967|Atrnl1|226255|attractin like 1
mm9_v1_chr6_+_134961629_134961652	0.412778	AACACUG	NM_026360|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	AK010310|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC132242|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC132244|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	AK076982|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC060168|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC095944|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
mm9_v1_chr6_+_72297294_72297363	0.408065	AACACUG	AK085662|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	NM_026696|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC064080|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	AK013079|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC066053|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC117811|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC117812|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	AK002701|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene
mm9_v1_chr5_-_138721164_138721212	0.407574	AACACUG	AK049639|Gpc2|71951|glypican 2 (cerebroglycan)	NM_172412|Gpc2|71951|glypican 2 (cerebroglycan)	BC083180|Gpc2|71951|glypican 2 (cerebroglycan)	AK048605|Gpc2|71951|glypican 2 (cerebroglycan)	AK010515|Gpc2|71951|glypican 2 (cerebroglycan)	AK160959|Gpc2|71951|glypican 2 (cerebroglycan)	BC056941|Gpc2|71951|glypican 2 (cerebroglycan)
mm9_v1_chr3_-_9610062_9610137	0.404825	AACACUG	AF292939|Zfp704|170753|zinc finger protein 704	NM_133218|Zfp704|170753|zinc finger protein 704
mm9_v1_chrX_+_54306724_54306791	0.403934	AACACUG	AK012522|Htatsf1|72459|HIV TAT specific factor 1	BC037711|Htatsf1|72459|HIV TAT specific factor 1	NM_028242|Htatsf1|72459|HIV TAT specific factor 1
mm9_v1_chr11_-_71949346_71949391	0.403263	AACACUG	AK147444|Pitpnm3|327958|PITPNM family member 3	NM_001024927|Pitpnm3|327958|PITPNM family member 3	NM_001081641|Pitpnm3|327958|PITPNM family member 3
mm9_v1_chr1_+_193542261_193542399	0.401175	AACACUG	NM_001134829|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	AK172914|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	BC013667|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1
mm9_v1_chr12_-_32319353_32319551	0.400731	AACACUG	BC003303|Bcap29|12033|B-cell receptor-associated protein 29	BC021661|Bcap29|12033|B-cell receptor-associated protein 29	NM_007530|Bcap29|12033|B-cell receptor-associated protein 29	AK090068|Bcap29|12033|B-cell receptor-associated protein 29	AK144754|Bcap29|12033|B-cell receptor-associated protein 29	NM_001164090|Bcap29|12033|B-cell receptor-associated protein 29
mm9_v1_chr2_-_58177217_58177217	0.400176	AACACUG	AK049089|Acvr1c|269275|activin A receptor, type IC	NM_001033369|Acvr1c|269275|activin A receptor, type IC
mm9_v1_chr8_+_13405080_13405105	0.398564	AACACUG	BC096611|Grk1|24013|G protein-coupled receptor kinase 1	NM_011881|Grk1|24013|G protein-coupled receptor kinase 1	BC075722|Grk1|24013|G protein-coupled receptor kinase 1
mm9_v1_chr9_-_95412264_95412414	0.398171	AACACUG	BC031497|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	BC080699|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	AK011588|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	BC059732|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	AK011796|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	AK029898|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	BC068265|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	NM_001114977|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	NM_026476|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene
mm9_v1_chr10_+_61595837_61595922	0.396905	AACACUG	AK008017|Neurog3|11925|neurogenin 3	NM_009719|Neurog3|11925|neurogenin 3	BC104326|Neurog3|11925|neurogenin 3	BC104327|Neurog3|11925|neurogenin 3
mm9_v1_chr4_-_112447424_112447470	0.39629	AACACUG	EF494906|Skint10|230613|selection and upkeep of intraepithelial T cells 10	EF494905|Skint10|230613|selection and upkeep of intraepithelial T cells 10	AK037152|Skint10|230613|selection and upkeep of intraepithelial T cells 10	AK042291|Skint10|230613|selection and upkeep of intraepithelial T cells 10	NM_177668|Skint10|230613|selection and upkeep of intraepithelial T cells 10	AK040044|Skint10|230613|selection and upkeep of intraepithelial T cells 10
mm9_v1_chr7_+_86198368_86198368	0.39154	AACACUG	L07049|Acan|11595|aggrecan	NM_007424|Acan|11595|aggrecan
mm9_v1_chr3_-_132613190_132613254	0.391019	AACACUG	AB059656|Npnt|114249|nephronectin	NM_001029836|Npnt|114249|nephronectin	NM_033525|Npnt|114249|nephronectin
mm9_v1_chr14_-_34260323_34260352	0.386211	AACACUG	AK139498|Mapk8|26419|mitogen-activated protein kinase 8	AK032486|Mapk8|26419|mitogen-activated protein kinase 8	AK043102|Mapk8|26419|mitogen-activated protein kinase 8	AK085745|Mapk8|26419|mitogen-activated protein kinase 8	AK030767|Mapk8|26419|mitogen-activated protein kinase 8	NM_016700|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr15_-_34608458_34608547	0.384399	AACACUG	AK033975|Nipal2|223473|NIPA-like domain containing 2	NM_145469|Nipal2|223473|NIPA-like domain containing 2	BC016107|Nipal2|223473|NIPA-like domain containing 2	AK132530|Nipal2|223473|NIPA-like domain containing 2	AK087325|Nipal2|223473|NIPA-like domain containing 2
mm9_v1_chrX_-_11737471_11737480	0.384018	AACACUG	BC027704|2900008C10Rik|72937|RIKEN cDNA 2900008C10 gene	AK129398|Bcor|71458|BCL6 interacting corepressor	NM_001168321|Bcor|71458|BCL6 interacting corepressor
mm9_v1_chr1_-_158869401_158869517	0.381777	AACACUG	AK019543|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_001159966|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2
mm9_v1_chr18_+_42671130_42671146	0.380564	AACACUG	NM_001039474|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr5_+_142939884_142940027	0.378308	AACACUG	NM_172725|C330006K01Rik|231855|RIKEN cDNA C330006K01 gene	BC082786|C330006K01Rik|231855|RIKEN cDNA C330006K01 gene	BC099419|C330006K01Rik|231855|RIKEN cDNA C330006K01 gene	AK152402|C330006K01Rik|231855|RIKEN cDNA C330006K01 gene	AK146431|C330006K01Rik|231855|RIKEN cDNA C330006K01 gene	AK153787|C330006K01Rik|231855|RIKEN cDNA C330006K01 gene	BC057548|C330006K01Rik|231855|RIKEN cDNA C330006K01 gene
mm9_v1_chr18_-_23200150_23200199	0.378133	AACACUG	AK006244|Nol4|319211|nucleolar protein 4	AK031008|Nol4|319211|nucleolar protein 4	NM_199024|Nol4|319211|nucleolar protein 4	AK005959|Nol4|319211|nucleolar protein 4
mm9_v1_chr17_-_78817348_78817472	0.377448	AACACUG	BC064130|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	AK033547|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	AK165595|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	BC096619|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	AY382580|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	NM_199448|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	AK159545|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	AK157221|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	AK150241|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	BC052366|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)
mm9_v1_chr6_+_124959685_124959822	0.373418	AACACUG	AK086185|Zfp384|269800|zinc finger protein 384	BC064013|Zfp384|269800|zinc finger protein 384	NM_175557|Zfp384|269800|zinc finger protein 384
mm9_v1_chr13_-_64376186_64376295	0.369768	AACACUG	BC057357|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	BC049794|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	AK161345|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_172587|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chr7_-_91558468_91558528	0.368336	AACACUG	BC054546|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2	NM_007488|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2
mm9_v1_chr7_+_57033711_57033769	0.366772	AACACUG	AK010534|Prmt3|71974|protein arginine N-methyltransferase 3	AK031738|Prmt3|71974|protein arginine N-methyltransferase 3	NM_133740|Prmt3|71974|protein arginine N-methyltransferase 3	AK155236|Prmt3|71974|protein arginine N-methyltransferase 3	AK008118|Prmt3|71974|protein arginine N-methyltransferase 3	AK049836|Prmt3|71974|protein arginine N-methyltransferase 3	BC050775|Prmt3|71974|protein arginine N-methyltransferase 3	AK086646|Prmt3|71974|protein arginine N-methyltransferase 3
mm9_v1_chr9_-_66682454_66682525	0.361918	AACACUG	AB197123|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)	AK002310|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)	BC050923|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)	BC063254|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)	NM_026674|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)	AK155147|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)
mm9_v1_chr1_-_134439500_134439516	0.359053	AACACUG	AK147602|Cntn2|21367|contactin 2	NM_177129|Cntn2|21367|contactin 2
mm9_v1_chr5_-_87061409_87061448	0.357249	AACACUG	AK029032|Tmprss11f|243083|transmembrane protease, serine 11f	AK028587|Tmprss11f|243083|transmembrane protease, serine 11f	AK028447|Tmprss11f|243083|transmembrane protease, serine 11f	AK036957|Tmprss11f|243083|transmembrane protease, serine 11f	NM_178730|Tmprss11f|243083|transmembrane protease, serine 11f
mm9_v1_chrX_+_135448968_135449043	0.356694	AACACUG	NM_013724|Nrk|27206|Nik related kinase	AK041377|Nrk|27206|Nik related kinase	BC068311|Nrk|27206|Nik related kinase	AB020741|Nrk|27206|Nik related kinase
mm9_v1_chr11_-_59285954_59285975	0.35348	AACACUG	BC050078|Zfp867|237775|zinc finger protein 867	AK132062|Zfp867|237775|zinc finger protein 867	NM_178417|Zfp867|237775|zinc finger protein 867
mm9_v1_chr5_-_76374399_76374520	0.352873	AACACUG	X59397|Kdr|16542|kinase insert domain protein receptor	BC020530|Kdr|16542|kinase insert domain protein receptor	NM_010612|Kdr|16542|kinase insert domain protein receptor	S53103|Kdr|16542|kinase insert domain protein receptor	AK141938|Kdr|16542|kinase insert domain protein receptor	EU884114|Kdr|16542|kinase insert domain protein receptor	AK054510|Kdr|16542|kinase insert domain protein receptor
mm9_v1_chr9_+_13632152_13632249	0.343877	AACACUG	AK145026|Fam76b|72826|family with sequence similarity 76, member B	BC043120|Fam76b|72826|family with sequence similarity 76, member B	NM_176836|Fam76b|72826|family with sequence similarity 76, member B	AK052430|Fam76b|72826|family with sequence similarity 76, member B	BC050870|Fam76b|72826|family with sequence similarity 76, member B
mm9_v1_chr5_+_36235967_36236084	0.338222	AACACUG	BC050814|Afap1|70292|actin filament associated protein 1	NM_027373|Afap1|70292|actin filament associated protein 1	AK161385|Afap1|70292|actin filament associated protein 1	AK080756|Afap1|70292|actin filament associated protein 1	AK129483|Afap1|70292|actin filament associated protein 1	AK147706|Afap1|70292|actin filament associated protein 1
mm9_v1_chr16_+_33062606_33062616	0.33757	AACACUG	AK030463|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	BC111899|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	BC112428|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	NM_172823|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)
mm9_v1_chr4_+_111087610_111087629	0.336451	AACACUG	AK075885|Bend5|67621|BEN domain containing 5	NM_026279|Bend5|67621|BEN domain containing 5	AK014057|Bend5|67621|BEN domain containing 5
mm9_v1_chr3_+_138189154_138189154	0.32868	AACACUG	NM_007917|Eif4e|13684|eukaryotic translation initiation factor 4E
mm9_v1_chrX_-_11657678_11657678	0.328331	AACACUG	AK053309|Bcor|71458|BCL6 interacting corepressor	NM_029510|Bcor|71458|BCL6 interacting corepressor	NM_175044|Bcor|71458|BCL6 interacting corepressor	NM_175045|Bcor|71458|BCL6 interacting corepressor	NM_175046|Bcor|71458|BCL6 interacting corepressor
mm9_v1_chr6_-_85452851_85452987	0.325165	AACACUG	AK147681|Fbxo41|330369|F-box protein 41	AK147230|Fbxo41|330369|F-box protein 41	NM_001001160|Fbxo41|330369|F-box protein 41	BC070445|Fbxo41|330369|F-box protein 41
mm9_v1_chr6_-_38074549_38074585	0.321929	AACACUG	AK165464|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4	AF435090|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4	AK128892|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4	AK143790|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4	NM_080467|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4
mm9_v1_chr5_-_35917699_35917718	0.321533	AACACUG	AK019101|2310079F23Rik|78890|RIKEN cDNA 2310079F23 gene	BC152332|2310079F23Rik|78890|RIKEN cDNA 2310079F23 gene	AK046957|2310079F23Rik|78890|RIKEN cDNA 2310079F23 gene	AK132402|2310079F23Rik|78890|RIKEN cDNA 2310079F23 gene	NM_030208|2310079F23Rik|78890|RIKEN cDNA 2310079F23 gene
mm9_v1_chr14_-_35401654_35401841	0.31667	AACACUG	AF228057|Ldb3|24131|LIM domain binding 3	AF228058|Ldb3|24131|LIM domain binding 3	AY206011|Ldb3|24131|LIM domain binding 3	AY206015|Ldb3|24131|LIM domain binding 3	AK172980|Ldb3|24131|LIM domain binding 3	NM_001039074|Ldb3|24131|LIM domain binding 3	BC138793|Ldb3|24131|LIM domain binding 3	BC145420|Ldb3|24131|LIM domain binding 3	AK142292|Ldb3|24131|LIM domain binding 3	AF114378|Ldb3|24131|LIM domain binding 3	AY206012|Ldb3|24131|LIM domain binding 3	AF114379|Ldb3|24131|LIM domain binding 3	AY206013|Ldb3|24131|LIM domain binding 3	BC099596|Ldb3|24131|LIM domain binding 3
mm9_v1_chr19_+_40969176_40969231	0.315274	AACACUG	AK087532|E130314M14Rik|449522|RIKEN cDNA E130314M14 gene	AK041506|Zfp518a|72672|zinc finger protein 518A	NM_028319|Zfp518a|72672|zinc finger protein 518A
mm9_v1_chr5_-_124022937_124023057	0.314976	AACACUG	AK194964|Vps33a|77573|vacuolar protein sorting 33A (yeast)	AF439858|Vps33a|77573|vacuolar protein sorting 33A (yeast)	AK019463|Vps33a|77573|vacuolar protein sorting 33A (yeast)	AK140553|Vps33a|77573|vacuolar protein sorting 33A (yeast)	AK150282|Vps33a|77573|vacuolar protein sorting 33A (yeast)	AK150550|Vps33a|77573|vacuolar protein sorting 33A (yeast)	BC046417|Vps33a|77573|vacuolar protein sorting 33A (yeast)	AK041982|Vps33a|77573|vacuolar protein sorting 33A (yeast)	NM_029929|Vps33a|77573|vacuolar protein sorting 33A (yeast)
mm9_v1_chr15_+_3976427_3976447	0.312528	AACACUG	AK078086|Oxct1|67041|3-oxoacid CoA transferase 1	NM_024188|Oxct1|67041|3-oxoacid CoA transferase 1
mm9_v1_chr9_+_106073255_106073259	0.312129	AACACUG	AK037620|Wdr82|77305|WD repeat domain containing 82	AK035109|Wdr82|77305|WD repeat domain containing 82	AK149692|Wdr82|77305|WD repeat domain containing 82	AK159240|Wdr82|77305|WD repeat domain containing 82	AK172474|Wdr82|77305|WD repeat domain containing 82	NM_029896|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr19_+_8692485_8692668	0.310657	AACACUG	NM_008766|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	BC021647|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	U52842|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	AK035971|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6
mm9_v1_chr1_+_131169878_131169880	0.309344	AACACUG	AK052119|Thsd7b|210417|thrombospondin, type I, domain containing 7B	NM_172485|Thsd7b|210417|thrombospondin, type I, domain containing 7B
mm9_v1_chr2_+_128793137_128793209	0.307794	AACACUG	AK050503|Zc3h6|78751|zinc finger CCCH type containing 6	NM_178404|Zc3h6|78751|zinc finger CCCH type containing 6	AK013610|Zc3h6|78751|zinc finger CCCH type containing 6	AK019345|Zc3h6|78751|zinc finger CCCH type containing 6	AK039171|Zc3h6|78751|zinc finger CCCH type containing 6	AK014766|Zc3h6|78751|zinc finger CCCH type containing 6	BC058173|Zc3h6|78751|zinc finger CCCH type containing 6
mm9_v1_chr2_-_9800211_9800245	0.307499	AACACUG	AK156634|Gata3|14462|GATA binding protein 3	AK053728|Gata3|14462|GATA binding protein 3	AK090089|Gata3|14462|GATA binding protein 3	AK155549|Gata3|14462|GATA binding protein 3	NM_008091|Gata3|14462|GATA binding protein 3
mm9_v1_chr8_+_28479182_28479253	0.305242	AACACUG	AK030464|Chrnb3|108043|cholinergic receptor, nicotinic, beta polypeptide 3	NM_027454|Chrnb3|108043|cholinergic receptor, nicotinic, beta polypeptide 3	NM_173212|Chrnb3|108043|cholinergic receptor, nicotinic, beta polypeptide 3	AK133689|Chrnb3|108043|cholinergic receptor, nicotinic, beta polypeptide 3	AK017571|Chrnb3|108043|cholinergic receptor, nicotinic, beta polypeptide 3
mm9_v1_chr15_-_96291163_96291288	0.301588	AACACUG	AK129478|Scaf11|72193|SR-related CTD-associated factor 11	AK034674|Scaf11|72193|SR-related CTD-associated factor 11	BC058682|Scaf11|72193|SR-related CTD-associated factor 11	NM_028148|Scaf11|72193|SR-related CTD-associated factor 11
mm9_v1_chr2_-_4984983_4985031	0.299988	AACACUG	BC061185|Optn|71648|optineurin	NM_181848|Optn|71648|optineurin
mm9_v1_chr18_+_61085283_61085301	0.297598	AACACUG	AK083245|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK163179|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	NM_177407|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK122410|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	X14836|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr9_-_64585562_64585585	0.296575	AACACUG	AK014268|Rab11a|53869|RAB11a, member RAS oncogene family	AK147122|Rab11a|53869|RAB11a, member RAS oncogene family	NM_017382|Rab11a|53869|RAB11a, member RAS oncogene family
mm9_v1_chr9_+_32503600_32503674	0.29648	AACACUG	NM_001038642|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	NM_011808|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	BC010588|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	AK168247|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain
mm9_v1_chr6_+_86145220_86145449	0.295728	AACACUG	AK010785|Tgfa|21802|transforming growth factor alpha	AK165017|Tgfa|21802|transforming growth factor alpha	NM_031199|Tgfa|21802|transforming growth factor alpha	AK166321|Tgfa|21802|transforming growth factor alpha	U65016|Tgfa|21802|transforming growth factor alpha	BC132185|Tgfa|21802|transforming growth factor alpha	BC132211|Tgfa|21802|transforming growth factor alpha
mm9_v1_chr11_-_101646571_101646623	0.29044	AACACUG	AK166136|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	AK144590|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	AK144538|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	NM_008815|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)
mm9_v1_chr6_-_129457171_129457184	0.289927	AACACUG	AF303744|Olr1|108078|oxidized low density lipoprotein (lectin-like) receptor 1	AK154687|Olr1|108078|oxidized low density lipoprotein (lectin-like) receptor 1	AK160919|Olr1|108078|oxidized low density lipoprotein (lectin-like) receptor 1	NM_138648|Olr1|108078|oxidized low density lipoprotein (lectin-like) receptor 1
mm9_v1_chr1_+_135142673_135142702	0.289195	AACACUG	NM_001160268|Plekha6|240753|pleckstrin homology domain containing, family A member 6	NM_182930|Plekha6|240753|pleckstrin homology domain containing, family A member 6	BC054547|Plekha6|240753|pleckstrin homology domain containing, family A member 6	AK173074|Plekha6|240753|pleckstrin homology domain containing, family A member 6
mm9_v1_chr18_+_59334993_59335106	0.286491	AACACUG	NM_001081328|Chsy3|78923|chondroitin sulfate synthase 3	AK043732|Chsy3|78923|chondroitin sulfate synthase 3	AK044099|Chsy3|78923|chondroitin sulfate synthase 3	AK038429|Chsy3|78923|chondroitin sulfate synthase 3	AK048196|Chsy3|78923|chondroitin sulfate synthase 3	AK220519|Chsy3|78923|chondroitin sulfate synthase 3
mm9_v1_chr4_+_32744074_32744093	0.28491	AACACUG	AK144722|Mdn1|100019|midasin homolog (yeast)	NM_001081392|Mdn1|100019|midasin homolog (yeast)
mm9_v1_chrX_-_140261954_140261960	0.284567	AACACUG	NM_007603|Capn6|12338|calpain 6	AK145116|Capn6|12338|calpain 6
mm9_v1_chr13_-_97440734_97440890	0.283384	AACACUG	AK159899|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	BC085083|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	AK048784|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	NM_008255|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase
mm9_v1_chr11_-_58752374_58752457	0.282675	AACACUG	AK076158|Rnf187|108660|ring finger protein 187	AB030190|Rnf187|108660|ring finger protein 187	BC072613|Rnf187|108660|ring finger protein 187	AK088973|Rnf187|108660|ring finger protein 187	NM_022423|Rnf187|108660|ring finger protein 187	AK075944|Rnf187|108660|ring finger protein 187
mm9_v1_chr4_-_133928435_133928461	0.281555	AACACUG	AK164184|Extl1|56219|exostoses (multiple)-like 1	AK085075|Extl1|56219|exostoses (multiple)-like 1	AK172619|Extl1|56219|exostoses (multiple)-like 1	NM_019578|Extl1|56219|exostoses (multiple)-like 1
mm9_v1_chr16_-_98183757_98183799	0.277853	AACACUG	BC051176|Zfp295|114565|zinc finger protein 295	AK129313|Zfp295|114565|zinc finger protein 295	AK031118|Zfp295|114565|zinc finger protein 295	AK080932|Zfp295|114565|zinc finger protein 295	AK145072|Zfp295|114565|zinc finger protein 295	AK034057|Zfp295|114565|zinc finger protein 295	NM_001081684|Zfp295|114565|zinc finger protein 295	NM_001081685|Zfp295|114565|zinc finger protein 295	NM_175428|Zfp295|114565|zinc finger protein 295	AK170928|Zfp295|114565|zinc finger protein 295
mm9_v1_chr2_-_5816381_5816442	0.277012	AACACUG	AK160602|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	AK077701|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	NM_021305|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)
mm9_v1_chr18_-_6135924_6136095	0.27454	AACACUG	AK031648|Arhgap12|75415|Rho GTPase activating protein 12	AK012717|Arhgap12|75415|Rho GTPase activating protein 12	AK077063|Arhgap12|75415|Rho GTPase activating protein 12	NM_001039692|Arhgap12|75415|Rho GTPase activating protein 12	NM_029277|Arhgap12|75415|Rho GTPase activating protein 12
mm9_v1_chr7_+_130267398_130267398	0.273469	AACACUG	NM_144925|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr1_-_177618483_177618483	0.272478	AACACUG	BC118932|Chml|12663|choroideremia-like	NM_021350|Chml|12663|choroideremia-like
mm9_v1_chr11_-_102680999_102681013	0.267552	AACACUG	BC071230|Gjc1|14615|gap junction protein, gamma 1	NM_001159383|Gjc1|14615|gap junction protein, gamma 1	AY390396|Gjc1|14615|gap junction protein, gamma 1
mm9_v1_chr7_-_116637251_116637251	0.267291	AACACUG	AK147559|Trim66|330627|tripartite motif-containing 66	NM_001170913|Trim66|330627|tripartite motif-containing 66
mm9_v1_chr17_-_32421025_32421067	0.264407	AACACUG	BC082782|Brd4|57261|bromodomain containing 4	AK147545|Brd4|57261|bromodomain containing 4	BC138835|Brd4|57261|bromodomain containing 4	BC138834|Brd4|57261|bromodomain containing 4	AF461395|Brd4|57261|bromodomain containing 4	AF461396|Brd4|57261|bromodomain containing 4	NM_020508|Brd4|57261|bromodomain containing 4	NM_198094|Brd4|57261|bromodomain containing 4
mm9_v1_chr10_-_77927652_77927763	0.263553	AACACUG	BC032171|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK145470|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK166464|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK080846|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK039194|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK166078|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	NM_172134|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	BC027745|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase
mm9_v1_chr3_+_58810899_58810899	0.261986	AACACUG	AK047743|Med12l|329650|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like	NM_177855|Med12l|329650|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like
mm9_v1_chr19_-_4477106_4477182	0.261894	AACACUG	AK083139|Syt12|171180|synaptotagmin XII	NM_134164|Syt12|171180|synaptotagmin XII
mm9_v1_chr11_+_110829346_110829387	0.26049	AACACUG	AK078905|Kcnj16|16517|potassium inwardly-rectifying channel, subfamily J, member 16	AK128942|Kcnj16|16517|potassium inwardly-rectifying channel, subfamily J, member 16	NM_010604|Kcnj16|16517|potassium inwardly-rectifying channel, subfamily J, member 16	BC033442|Kcnj16|16517|potassium inwardly-rectifying channel, subfamily J, member 16
mm9_v1_chr15_-_75911299_75911319	0.2598	AACACUG	BC010601|Puf60|67959|poly-U binding splicing factor 60	NM_001164600|Puf60|67959|poly-U binding splicing factor 60	AK013342|Puf60|67959|poly-U binding splicing factor 60	AK012434|Puf60|67959|poly-U binding splicing factor 60
mm9_v1_chr12_-_32893074_32893513	0.259669	AACACUG	BC051246|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	AK137620|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	NM_001146201|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	AJ249280|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	NM_020272|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	AK137470|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	AK040543|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	AK132553|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	NM_001146200|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide
mm9_v1_chrX_+_65931715_65931923	0.255435	AACACUG	AK053829|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	BC079671|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	NM_008031|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK140343|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK046605|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK053701|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK080898|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK080948|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	L23971|Fmr1|14265|fragile X mental retardation syndrome 1 homolog
mm9_v1_chr1_-_121809744_121809749	0.255378	AACACUG	BC094344|Tmem177|66343|transmembrane protein 177	NM_175106|Tmem177|66343|transmembrane protein 177	AK009043|Tmem177|66343|transmembrane protein 177	AK076108|Tmem177|66343|transmembrane protein 177
mm9_v1_chr2_+_112124767_112124844	0.254695	AACACUG	AF211855|Slc12a6|107723|solute carrier family 12, member 6	NM_133648|Slc12a6|107723|solute carrier family 12, member 6
mm9_v1_chrX_-_83021840_83022157	0.254335	AACACUG	U48403|Gyk|14933|glycerol kinase	AK008186|Gyk|14933|glycerol kinase	BC003767|Gyk|14933|glycerol kinase	AK169424|Gyk|14933|glycerol kinase	AK088373|Gyk|14933|glycerol kinase	AK044308|Gyk|14933|glycerol kinase	AK169525|Gyk|14933|glycerol kinase	NM_008194|Gyk|14933|glycerol kinase	NM_212444|Gyk|14933|glycerol kinase
mm9_v1_chr3_+_40439675_40439741	0.25397	AACACUG	NM_175515|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	AK035092|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	BC125523|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	BC132387|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)
mm9_v1_chr7_+_99890204_99890223	0.25314	AACACUG	AK142206|Rab30|75985|RAB30, member RAS oncogene family	BC017550|Rab30|75985|RAB30, member RAS oncogene family	NM_029494|Rab30|75985|RAB30, member RAS oncogene family
mm9_v1_chr1_+_165992203_165992294	0.252531	AACACUG	AK170753|Sell|20343|selectin, lymphocyte	NM_001164059|Sell|20343|selectin, lymphocyte	NM_011346|Sell|20343|selectin, lymphocyte	AK161754|Sell|20343|selectin, lymphocyte	AK157273|Sell|20343|selectin, lymphocyte	AK172116|Sell|20343|selectin, lymphocyte	BC052681|Sell|20343|selectin, lymphocyte	M25324|Sell|20343|selectin, lymphocyte	X14772|Sell|20343|selectin, lymphocyte	M36005|Sell|20343|selectin, lymphocyte	M36058|Sell|20343|selectin, lymphocyte	AK137509|Sell|20343|selectin, lymphocyte
mm9_v1_chr12_+_87087488_87087539	0.250744	AACACUG	AY260574|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AY260575|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AY260576|Mfsd7c|217721|major facilitator superfamily domain containing 7C	BC011209|Mfsd7c|217721|major facilitator superfamily domain containing 7C	NM_145447|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AK145696|Mfsd7c|217721|major facilitator superfamily domain containing 7C
mm9_v1_chr2_+_20441139_20441459	0.245994	AACACUG	NM_001177630|Etl4|208618|enhancer trap locus 4	NM_001177631|Etl4|208618|enhancer trap locus 4	AK147510|Etl4|208618|enhancer trap locus 4	AB093289|Etl4|208618|enhancer trap locus 4	BC158051|Etl4|208618|enhancer trap locus 4	BC172143|Etl4|208618|enhancer trap locus 4	BC050016|Etl4|208618|enhancer trap locus 4	AK052733|Etl4|208618|enhancer trap locus 4
mm9_v1_chr7_-_112900699_112900744	0.243778	AACACUG	AJ011912|Tpp1|12751|tripeptidyl peptidase I	BC024820|Tpp1|12751|tripeptidyl peptidase I	AK170781|Tpp1|12751|tripeptidyl peptidase I	AK146759|Tpp1|12751|tripeptidyl peptidase I	AK048279|Tpp1|12751|tripeptidyl peptidase I	NM_009906|Tpp1|12751|tripeptidyl peptidase I	AK083832|Tpp1|12751|tripeptidyl peptidase I	AK169924|Tpp1|12751|tripeptidyl peptidase I	AF111172|Tpp1|12751|tripeptidyl peptidase I	AK155021|Tpp1|12751|tripeptidyl peptidase I	AK002418|Tpp1|12751|tripeptidyl peptidase I	AK165669|Tpp1|12751|tripeptidyl peptidase I
mm9_v1_chr6_-_72389491_72389552	0.243158	AACACUG	BC003451|Mat2a|232087|methionine adenosyltransferase II, alpha	AB070266|Mat2a|232087|methionine adenosyltransferase II, alpha	BC058360|Mat2a|232087|methionine adenosyltransferase II, alpha	AK145407|Mat2a|232087|methionine adenosyltransferase II, alpha	AK052764|Mat2a|232087|methionine adenosyltransferase II, alpha	AK133960|Mat2a|232087|methionine adenosyltransferase II, alpha	AK144189|Mat2a|232087|methionine adenosyltransferase II, alpha	AK150040|Mat2a|232087|methionine adenosyltransferase II, alpha	AK151281|Mat2a|232087|methionine adenosyltransferase II, alpha	AK160869|Mat2a|232087|methionine adenosyltransferase II, alpha	AK161852|Mat2a|232087|methionine adenosyltransferase II, alpha	AK164137|Mat2a|232087|methionine adenosyltransferase II, alpha	AK166671|Mat2a|232087|methionine adenosyltransferase II, alpha	AK168155|Mat2a|232087|methionine adenosyltransferase II, alpha	AK169705|Mat2a|232087|methionine adenosyltransferase II, alpha	AK034757|Mat2a|232087|methionine adenosyltransferase II, alpha	NM_145569|Mat2a|232087|methionine adenosyltransferase II, alpha
mm9_v1_chr5_-_124171015_124171067	0.240628	AACACUG	AK156770|Zcchc8|70650|zinc finger, CCHC domain containing 8	AK032349|Zcchc8|70650|zinc finger, CCHC domain containing 8	NM_027494|Zcchc8|70650|zinc finger, CCHC domain containing 8
mm9_v1_chr16_+_29579427_29579538	0.23874	AACACUG	AB044138|Opa1|74143|optic atrophy 1 homolog (human)	NM_133752|Opa1|74143|optic atrophy 1 homolog (human)	AK029157|Opa1|74143|optic atrophy 1 homolog (human)	AK053861|Opa1|74143|optic atrophy 1 homolog (human)	AK004715|Opa1|74143|optic atrophy 1 homolog (human)	AK030835|Opa1|74143|optic atrophy 1 homolog (human)	AK145620|Opa1|74143|optic atrophy 1 homolog (human)	AK038446|Opa1|74143|optic atrophy 1 homolog (human)	BC052704|Opa1|74143|optic atrophy 1 homolog (human)	AK050383|Opa1|74143|optic atrophy 1 homolog (human)	AK164872|Opa1|74143|optic atrophy 1 homolog (human)	AK044657|Opa1|74143|optic atrophy 1 homolog (human)	BC138665|Opa1|74143|optic atrophy 1 homolog (human)	BC145959|Opa1|74143|optic atrophy 1 homolog (human)
mm9_v1_chr18_-_46685557_46685627	0.237262	AACACUG	AK129440|Fem1c|240263|fem-1 homolog c (C.elegans)	AK049336|Fem1c|240263|fem-1 homolog c (C.elegans)	AK028330|Fem1c|240263|fem-1 homolog c (C.elegans)	NM_173423|Fem1c|240263|fem-1 homolog c (C.elegans)
mm9_v1_chr8_+_107749072_107749302	0.236503	AACACUG	AK156120|D230025D16Rik|234678|RIKEN cDNA D230025D16 gene	NM_145604|D230025D16Rik|234678|RIKEN cDNA D230025D16 gene	BC057919|D230025D16Rik|234678|RIKEN cDNA D230025D16 gene	AK051965|D230025D16Rik|234678|RIKEN cDNA D230025D16 gene	AK166937|D230025D16Rik|234678|RIKEN cDNA D230025D16 gene	BC066141|D230025D16Rik|234678|RIKEN cDNA D230025D16 gene	BC066826|D230025D16Rik|234678|RIKEN cDNA D230025D16 gene	BC006874|D230025D16Rik|234678|RIKEN cDNA D230025D16 gene
mm9_v1_chr18_-_35862744_35862797	0.236031	AACACUG	AK012521|Dnajc18|76594|DnaJ (Hsp40) homolog, subfamily C, member 18	BC026452|Dnajc18|76594|DnaJ (Hsp40) homolog, subfamily C, member 18	AK030483|Dnajc18|76594|DnaJ (Hsp40) homolog, subfamily C, member 18	NM_029669|Dnajc18|76594|DnaJ (Hsp40) homolog, subfamily C, member 18
mm9_v1_chrX_-_152057864_152057869	0.235422	AACACUG	BC116313|Ptchd1|211612|patched domain containing 1	BC116312|Ptchd1|211612|patched domain containing 1	NM_001093750|Ptchd1|211612|patched domain containing 1
mm9_v1_chr16_-_4523051_4523052	0.2352	AACACUG	AB113383|Srl|106393|sarcalumenin	NM_175347|Srl|106393|sarcalumenin
mm9_v1_chr1_-_167167019_167167127	0.232581	AACACUG	BC058250|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	BC002098|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	AK049119|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	AK075774|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	AK049784|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	NM_145513|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)
mm9_v1_chr11_+_32355355_32355458	0.232448	AACACUG	AK076953|Ubtd2|327900|ubiquitin domain containing 2	BC057026|Ubtd2|327900|ubiquitin domain containing 2	NM_173784|Ubtd2|327900|ubiquitin domain containing 2
mm9_v1_chr18_-_61867246_61867319	0.232263	AACACUG	BC060677|Pcyox1l|240334|prenylcysteine oxidase 1 like	AK050006|Pcyox1l|240334|prenylcysteine oxidase 1 like	NM_172832|Pcyox1l|240334|prenylcysteine oxidase 1 like
mm9_v1_chr19_-_19075535_19075606	0.232222	AACACUG	DQ779924|Rorb|225998|RAR-related orphan receptor beta	BC024768|Rorb|225998|RAR-related orphan receptor beta	AK044421|Rorb|225998|RAR-related orphan receptor beta	BC024842|Rorb|225998|RAR-related orphan receptor beta	NM_146095|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr5_+_139865857_139865857	0.229651	AACACUG	AK137454|Gpr146|80290|G protein-coupled receptor 146	NM_001038703|Gpr146|80290|G protein-coupled receptor 146
mm9_v1_chr4_+_89354888_89354955	0.226168	AACACUG	AF542047|Dmrta1|242523|doublesex and mab-3 related transcription factor like family A1	NM_175647|Dmrta1|242523|doublesex and mab-3 related transcription factor like family A1	BC137613|Dmrta1|242523|doublesex and mab-3 related transcription factor like family A1
mm9_v1_chr4_+_115457560_115457648	0.223343	AACACUG	BC044874|Atpaf1|230649|ATP synthase mitochondrial F1 complex assembly factor 1	NM_181040|Atpaf1|230649|ATP synthase mitochondrial F1 complex assembly factor 1
mm9_v1_chr12_+_112088488_112088532	0.223005	AACACUG	BC150732|Zfp839|72805|zinc finger protein 839	NM_028365|Zfp839|72805|zinc finger protein 839	AK013356|Zfp839|72805|zinc finger protein 839
mm9_v1_chr3_-_94462687_94462757	0.222438	AACACUG	AF002860|Tuft1|22156|tuftelin 1	BC019213|Tuft1|22156|tuftelin 1	AK132488|Tuft1|22156|tuftelin 1	AF047704|Tuft1|22156|tuftelin 1	NM_011656|Tuft1|22156|tuftelin 1	AK171705|Tuft1|22156|tuftelin 1
mm9_v1_chr1_+_193541845_193542002	0.221657	AACACUG	AK133814|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	NM_172266|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1
mm9_v1_chr1_-_152240082_152240184	0.219978	AACACUG	NM_001077237|BC003331|226499|cDNA sequence BC003331	NM_145511|BC003331|226499|cDNA sequence BC003331
mm9_v1_chr10_+_79642100_79642260	0.215033	AACACUG	AK140544|Efna2|13637|ephrin A2	NM_007909|Efna2|13637|ephrin A2
mm9_v1_chr12_-_21423296_21423379	0.21159	AACACUG	BC090838|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	NM_011739|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	BC110680|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm9_v1_chr16_+_91485457_91485490	0.211248	AACACUG	NM_010508|Ifnar1|15975|interferon (alpha and beta) receptor 1	AK136950|Ifnar1|15975|interferon (alpha and beta) receptor 1
mm9_v1_chr2_-_25877230_25877291	0.210197	AACACUG	BC021811|Ubac1|98766|ubiquitin associated domain containing 1	NM_133835|Ubac1|98766|ubiquitin associated domain containing 1
mm9_v1_chr13_+_33341476_33341506	0.20951	AACACUG	AK049429|Serpinb9e|20710|serine (or cysteine) peptidase inhibitor, clade B, member 9e	NM_011456|Serpinb9e|20710|serine (or cysteine) peptidase inhibitor, clade B, member 9e	BC050060|Serpinb9e|20710|serine (or cysteine) peptidase inhibitor, clade B, member 9e	U96709|Serpinb9e|20710|serine (or cysteine) peptidase inhibitor, clade B, member 9e	BC145592|Serpinb9e|20710|serine (or cysteine) peptidase inhibitor, clade B, member 9e	BC145593|Serpinb9e|20710|serine (or cysteine) peptidase inhibitor, clade B, member 9e
mm9_v1_chr19_+_44637331_44637363	0.209268	AACACUG	AK154774|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	BC130013|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	NM_176958|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK084960|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK043636|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK141867|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor
mm9_v1_chr1_-_165333739_165333824	0.207199	AACACUG	AK165909|Gorab|98376|golgin, RAB6-interacting	BC119132|Gorab|98376|golgin, RAB6-interacting	BC119134|Gorab|98376|golgin, RAB6-interacting	AK169151|Gorab|98376|golgin, RAB6-interacting	AK043953|Gorab|98376|golgin, RAB6-interacting	NM_178883|Gorab|98376|golgin, RAB6-interacting	AK039170|Gorab|98376|golgin, RAB6-interacting	AK170455|Gorab|98376|golgin, RAB6-interacting
mm9_v1_chr7_-_107128967_107128967	0.204442	AACACUG	NM_175388|Rnf169|108937|ring finger protein 169
mm9_v1_chr7_+_106683983_106683997	0.203896	AACACUG	AK147508|Arrb1|109689|arrestin, beta 1	NM_177231|Arrb1|109689|arrestin, beta 1	NM_178220|Arrb1|109689|arrestin, beta 1
mm9_v1_chr8_-_26311823_26311983	0.203787	AACACUG	BC125389|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	BC145709|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK037910|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK138513|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK046384|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AY177412|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AY177413|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	NM_177089|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	NM_199323|Tacc1|320165|transforming, acidic coiled-coil containing protein 1
mm9_v1_chr13_+_33415945_33415945	0.2036	AACACUG	BC052216|Serpinb9f|20709|serine (or cysteine) peptidase inhibitor, clade B, member 9f	NM_183197|Serpinb9f|20709|serine (or cysteine) peptidase inhibitor, clade B, member 9f
mm9_v1_chr4_-_134941539_134941586	0.203187	AACACUG	AK076488|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	AK014757|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	NM_001168498|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	NM_181047|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene
mm9_v1_chr4_-_132768403_132768450	0.202884	AACACUG	AK140464|Gpr3|14748|G-protein coupled receptor 3	AK158917|Gpr3|14748|G-protein coupled receptor 3	AK140302|Gpr3|14748|G-protein coupled receptor 3	NM_008154|Gpr3|14748|G-protein coupled receptor 3
mm9_v1_chr4_-_82970054_82970102	0.202261	AACACUG	BC151021|Ttc39b|69863|tetratricopeptide repeat domain 39B	AK007856|Ttc39b|69863|tetratricopeptide repeat domain 39B	AK037208|Ttc39b|69863|tetratricopeptide repeat domain 39B	NM_027238|Ttc39b|69863|tetratricopeptide repeat domain 39B
mm9_v1_chr7_-_72301384_72301483	0.20209	AACACUG	NM_183087|Fam189a1|70638|family with sequence similarity 189, member A1
mm9_v1_chr1_-_158869650_158869756	0.201978	AACACUG	BC043132|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	BC052663|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK169368|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK018622|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK029049|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK033549|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK161080|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK029993|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK036803|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_001159965|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_001159967|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_001159968|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_023884|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2
mm9_v1_chr4_-_129419450_129419570	0.199406	AACACUG	BC002051|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	U17046|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK146815|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	U17961|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK150687|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK152084|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	NM_011317|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK044927|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK050520|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK137122|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1
mm9_v1_chr4_-_148800731_148800857	0.195476	AACACUG	AK016689|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	NM_022022|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	AF260926|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm9_v1_chr9_+_109719138_109719140	0.190969	AACACUG	BC048588|Spink8|78709|serine peptidase inhibitor, Kazal type 8	NM_183136|Spink8|78709|serine peptidase inhibitor, Kazal type 8
mm9_v1_chr4_-_94269846_94269942	0.18841	AACACUG	BC139773|Plaa|18786|phospholipase A2, activating protein	AK075934|Plaa|18786|phospholipase A2, activating protein	BC139355|Plaa|18786|phospholipase A2, activating protein	BC139356|Plaa|18786|phospholipase A2, activating protein	NM_172695|Plaa|18786|phospholipase A2, activating protein	AK019070|Plaa|18786|phospholipase A2, activating protein
mm9_v1_chr13_-_18085124_18085192	0.18639	AACACUG	AK019184|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	AK076034|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	BC083111|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	AK011805|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	AK011852|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	BC020123|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	AK030455|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	AK151981|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	BC037189|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	BC048453|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	AK005425|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	AK011774|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	NM_025904|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene
mm9_v1_chr1_+_59969845_59969868	0.186209	AACACUG	AK154812|Fam117b|72750|family with sequence similarity 117, member B	NM_001037725|Fam117b|72750|family with sequence similarity 117, member B
mm9_v1_chr11_+_32247758_32247888	0.183642	AACACUG	NM_177364|Sh3pxd2b|268396|SH3 and PX domains 2B	AK169978|Sh3pxd2b|268396|SH3 and PX domains 2B	AK220175|Sh3pxd2b|268396|SH3 and PX domains 2B	AK090119|Sh3pxd2b|268396|SH3 and PX domains 2B	AK042261|Sh3pxd2b|268396|SH3 and PX domains 2B	BC141306|Sh3pxd2b|268396|SH3 and PX domains 2B	AK043324|Sh3pxd2b|268396|SH3 and PX domains 2B	AK089330|Sh3pxd2b|268396|SH3 and PX domains 2B	AK163471|Sh3pxd2b|268396|SH3 and PX domains 2B	AK171384|Sh3pxd2b|268396|SH3 and PX domains 2B	BC115711|Sh3pxd2b|268396|SH3 and PX domains 2B	BC115764|Sh3pxd2b|268396|SH3 and PX domains 2B	AK154898|Sh3pxd2b|268396|SH3 and PX domains 2B	AB430861|Sh3pxd2b|268396|SH3 and PX domains 2B
mm9_v1_chr3_-_97672147_97672234	0.178228	AACACUG	AK141917|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_177145|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr7_-_134757946_134757946	0.177673	AACACUG	BC067053|Zfp629|320683|zinc finger protein 629	NM_177226|Zfp629|320683|zinc finger protein 629
mm9_v1_chr16_+_10835151_10835160	0.175492	AACACUG	AK143588|A630055G03Rik|223970|RIKEN cDNA A630055G03 gene	NM_001162932|A630055G03Rik|223970|RIKEN cDNA A630055G03 gene	AK080331|A630055G03Rik|223970|RIKEN cDNA A630055G03 gene
mm9_v1_chrX_-_153853209_153853243	0.168778	AACACUG	U49908|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	NM_011077|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	U73910|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	AK158481|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)
mm9_v1_chr2_-_3392226_3392257	0.167638	AACACUG	BC032960|Suv39h2|64707|suppressor of variegation 3-9 homolog 2 (Drosophila)	AK083457|Suv39h2|64707|suppressor of variegation 3-9 homolog 2 (Drosophila)	AF149205|Suv39h2|64707|suppressor of variegation 3-9 homolog 2 (Drosophila)	AK045206|Suv39h2|64707|suppressor of variegation 3-9 homolog 2 (Drosophila)	NM_022724|Suv39h2|64707|suppressor of variegation 3-9 homolog 2 (Drosophila)
mm9_v1_chr11_-_20012953_20012967	0.1669	AACACUG	NM_146243|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)
mm9_v1_chr16_-_92466335_92466428	0.166097	AACACUG	AY325904|Rcan1|54720|regulator of calcineurin 1	AK146764|Rcan1|54720|regulator of calcineurin 1	NM_001081549|Rcan1|54720|regulator of calcineurin 1
mm9_v1_chr16_-_32079317_32079415	0.165266	AACACUG	BC086650|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2	NM_177326|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2
mm9_v1_chr12_-_99972803_99972854	0.163927	AACACUG	D37801|Ptpn21|24000|protein tyrosine phosphatase, non-receptor type 21	AK013777|Ptpn21|24000|protein tyrosine phosphatase, non-receptor type 21	AK030456|Ptpn21|24000|protein tyrosine phosphatase, non-receptor type 21	NM_011877|Ptpn21|24000|protein tyrosine phosphatase, non-receptor type 21
mm9_v1_chrX_+_137212566_137212566	0.15923	AACACUG	AF196480|Mid2|23947|midline 2	NM_011845|Mid2|23947|midline 2
mm9_v1_chr18_+_61715202_61715299	0.15563	AACACUG	BC048081|Csnk1a1|93687|casein kinase 1, alpha 1	BC019740|Csnk1a1|93687|casein kinase 1, alpha 1	NM_146087|Csnk1a1|93687|casein kinase 1, alpha 1	BC025439|Csnk1a1|93687|casein kinase 1, alpha 1
mm9_v1_chr5_-_72895429_72895446	0.1556	AACACUG	BC138339|Corin|53419|corin	BC138340|Corin|53419|corin	BC145243|Corin|53419|corin	AB013874|Corin|53419|corin	NM_016869|Corin|53419|corin
mm9_v1_chr8_+_98157458_98157482	0.15241	AACACUG	AK019225|Gins3|78833|GINS complex subunit 3 (Psf3 homolog)	AK160606|Gins3|78833|GINS complex subunit 3 (Psf3 homolog)	NM_030198|Gins3|78833|GINS complex subunit 3 (Psf3 homolog)	BC039794|Gins3|78833|GINS complex subunit 3 (Psf3 homolog)	BC064746|Gins3|78833|GINS complex subunit 3 (Psf3 homolog)
mm9_v1_chr8_-_85982247_85982289	0.151604	AACACUG	AK002521|Scoc|56367|short coiled-coil protein	BC147069|Scoc|56367|short coiled-coil protein	NM_001039137|Scoc|56367|short coiled-coil protein
mm9_v1_chr1_-_163806710_163806814	0.151285	AACACUG	BC138379|AI848100|226551|expressed sequence AI848100	AK171856|AI848100|226551|expressed sequence AI848100	NM_172645|AI848100|226551|expressed sequence AI848100
mm9_v1_chr19_+_7492081_7492131	0.150748	AACACUG	NM_175381|2700081O15Rik|108899|RIKEN cDNA 2700081O15 gene
mm9_v1_chr18_-_20160536_20160597	0.150681	AACACUG	BC144845|Dsc3|13507|desmocollin 3	NM_007882|Dsc3|13507|desmocollin 3	Y11169|Dsc3|13507|desmocollin 3
mm9_v1_chr4_+_119095288_119095487	0.15038	AACACUG	BC147848|Zmynd12|332934|zinc finger, MYND domain containing 12	BC147851|Zmynd12|332934|zinc finger, MYND domain containing 12	NM_001014900|Zmynd12|332934|zinc finger, MYND domain containing 12	BC147552|Zmynd12|332934|zinc finger, MYND domain containing 12	BC147553|Zmynd12|332934|zinc finger, MYND domain containing 12	AY959941|Zmynd12|332934|zinc finger, MYND domain containing 12
mm9_v1_chr3_+_30894668_30894897	0.150075	AACACUG	AK220517|Prkci|18759|protein kinase C, iota	AK144979|Prkci|18759|protein kinase C, iota	NM_008857|Prkci|18759|protein kinase C, iota	AK147710|Prkci|18759|protein kinase C, iota	AK167411|Prkci|18759|protein kinase C, iota	BC021630|Prkci|18759|protein kinase C, iota	D28577|Prkci|18759|protein kinase C, iota
mm9_v1_chr11_-_23533564_23533665	0.147748	AACACUG	AK129454|0610010F05Rik|71675|RIKEN cDNA 0610010F05 gene	BC055049|0610010F05Rik|71675|RIKEN cDNA 0610010F05 gene	BC079876|0610010F05Rik|71675|RIKEN cDNA 0610010F05 gene	BC072622|0610010F05Rik|71675|RIKEN cDNA 0610010F05 gene	AK053838|0610010F05Rik|71675|RIKEN cDNA 0610010F05 gene	NM_027860|0610010F05Rik|71675|RIKEN cDNA 0610010F05 gene
mm9_v1_chr11_-_3309227_3309253	0.145711	AACACUG	NM_010718|Limk2|16886|LIM motif-containing protein kinase 2
mm9_v1_chr10_+_34001987_34002104	0.144513	AACACUG	NM_009433|Tspyl1|22110|testis-specific protein, Y-encoded-like 1	AK159432|Tspyl1|22110|testis-specific protein, Y-encoded-like 1	AK166438|Tspyl1|22110|testis-specific protein, Y-encoded-like 1	AF042180|Tspyl1|22110|testis-specific protein, Y-encoded-like 1	AK053812|Tspyl1|22110|testis-specific protein, Y-encoded-like 1	BC011213|Tspyl1|22110|testis-specific protein, Y-encoded-like 1	AK166805|Tspyl1|22110|testis-specific protein, Y-encoded-like 1	AK166893|Tspyl1|22110|testis-specific protein, Y-encoded-like 1
mm9_v1_chr10_-_29082247_29082247	0.140902	AACACUG	BC050795|Rnf146|68031|ring finger protein 146	NM_001110196|Rnf146|68031|ring finger protein 146	NM_001110197|Rnf146|68031|ring finger protein 146	NM_001110198|Rnf146|68031|ring finger protein 146	NM_026518|Rnf146|68031|ring finger protein 146
mm9_v1_chr18_+_5046584_5046587	0.139818	AACACUG	AF317422|Svil|225115|supervillin	AF317423|Svil|225115|supervillin	NM_153153|Svil|225115|supervillin	HQ259291|Svil|225115|supervillin
mm9_v1_chr12_-_106103285_106103341	0.13952	AACACUG	AB047978|Clmn|94040|calmin	AB059643|Clmn|94040|calmin	AB059644|Clmn|94040|calmin	AB059645|Clmn|94040|calmin	AB059646|Clmn|94040|calmin	AB059647|Clmn|94040|calmin	AB059648|Clmn|94040|calmin	NM_001040682|Clmn|94040|calmin	NM_053155|Clmn|94040|calmin
mm9_v1_chr3_-_141645214_141645214	0.13878	AACACUG	BC065143|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B	NM_007560|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B
mm9_v1_chr15_+_84847570_84847657	0.137714	AACACUG	BC125336|Upk3a|22270|uroplakin 3A	BC125338|Upk3a|22270|uroplakin 3A	NM_023478|Upk3a|22270|uroplakin 3A	DQ387454|Upk3a|22270|uroplakin 3A	AF222750|Upk3a|22270|uroplakin 3A
mm9_v1_chr1_+_57434454_57434500	0.134976	AACACUG	NM_028546|1700066M21Rik|73467|RIKEN cDNA 1700066M21 gene
mm9_v1_chr3_-_9833502_9833678	0.134735	AACACUG	BC145328|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	BC145761|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	BC145763|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK172106|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK156986|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK040230|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK041695|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK089329|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK156000|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	NM_001195031|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	NM_053182|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1
mm9_v1_chr7_+_17428413_17428564	0.133226	AACACUG	AK037030|Prkd2|101540|protein kinase D2	NM_178900|Prkd2|101540|protein kinase D2	AK154029|Prkd2|101540|protein kinase D2
mm9_v1_chr6_+_47870566_47870709	0.132967	AACACUG	NM_001145881|Zfp212|232784|Zinc finger protein 212	NM_145576|Zfp212|232784|Zinc finger protein 212	BC088737|Zfp212|232784|Zinc finger protein 212	BC006693|Zfp212|232784|Zinc finger protein 212	AK129476|Zfp212|232784|Zinc finger protein 212
mm9_v1_chr4_+_48598013_48598089	0.132394	AACACUG	BC057598|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1	NM_021436|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1
mm9_v1_chr11_+_68884268_68884388	0.130219	AACACUG	NM_025838|Tmem107|66910|transmembrane protein 107	NM_028336|Tmem107|66910|transmembrane protein 107	AK012938|Tmem107|66910|transmembrane protein 107	AK154279|Tmem107|66910|transmembrane protein 107	AK003403|Tmem107|66910|transmembrane protein 107	AK002804|Tmem107|66910|transmembrane protein 107	BC096686|Tmem107|66910|transmembrane protein 107	BC137584|Tmem107|66910|transmembrane protein 107	BC120499|Tmem107|66910|transmembrane protein 107
mm9_v1_chr18_-_47528483_47528523	0.129959	AACACUG	BC059238|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	AK042751|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	NM_018744|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	AK082711|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm9_v1_chr15_-_9070066_9070213	0.12746	AACACUG	AF083215|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK204645|Skp2|27401|S-phase kinase-associated protein 2 (p45)	BC003468|Skp2|27401|S-phase kinase-associated protein 2 (p45)	BC092236|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK167677|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK037002|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK044212|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK166034|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK032979|Skp2|27401|S-phase kinase-associated protein 2 (p45)	BC098371|Skp2|27401|S-phase kinase-associated protein 2 (p45)	NM_013787|Skp2|27401|S-phase kinase-associated protein 2 (p45)	NM_145468|Skp2|27401|S-phase kinase-associated protein 2 (p45)
mm9_v1_chr17_+_29405732_29405781	0.124589	AACACUG	NM_030561|BC004004|80748|cDNA sequence BC004004
mm9_v1_chr3_-_151500395_151500491	0.116724	AACACUG	AK087833|Ptgfr|19220|prostaglandin F receptor	D17433|Ptgfr|19220|prostaglandin F receptor	BC064794|Ptgfr|19220|prostaglandin F receptor	AK141760|Ptgfr|19220|prostaglandin F receptor	AK076450|Ptgfr|19220|prostaglandin F receptor	NM_008966|Ptgfr|19220|prostaglandin F receptor
mm9_v1_chr4_-_35104577_35104753	0.116711	AACACUG	AK039841|Mobkl2b|214944|MOB1, Mps One Binder kinase activator-like 2B (yeast)	AK089781|Mobkl2b|214944|MOB1, Mps One Binder kinase activator-like 2B (yeast)	BC020028|Mobkl2b|214944|MOB1, Mps One Binder kinase activator-like 2B (yeast)	NM_178061|Mobkl2b|214944|MOB1, Mps One Binder kinase activator-like 2B (yeast)	AK170973|Mobkl2b|214944|MOB1, Mps One Binder kinase activator-like 2B (yeast)	AK087285|Mobkl2b|214944|MOB1, Mps One Binder kinase activator-like 2B (yeast)	AK155217|Mobkl2b|214944|MOB1, Mps One Binder kinase activator-like 2B (yeast)
mm9_v1_chr19_-_29409041_29409159	0.114441	AACACUG	BC111817|Rln1|19773|relaxin 1	BC148202|Rln1|19773|relaxin 1	Z27088|Rln1|19773|relaxin 1	BC132654|Rln1|19773|relaxin 1	BC132656|Rln1|19773|relaxin 1	NM_011272|Rln1|19773|relaxin 1
mm9_v1_chr10_-_59682007_59682007	0.113694	AACACUG	NM_016803|Chst3|53374|carbohydrate (chondroitin 6/keratan) sulfotransferase 3
mm9_v1_chrX_+_68809163_68809181	0.113563	AACACUG	NM_008253|Hmgb3|15354|high mobility group box 3	AK032163|Hmgb3|15354|high mobility group box 3
mm9_v1_chr4_-_134954104_134954141	0.11281	AACACUG	BC037722|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	BC005730|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	BC039748|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	AK167453|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	NM_001168500|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	NM_145555|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene
mm9_v1_chr14_-_37948251_37948510	0.110146	AACACUG	AK159695|Ghitm|66092|growth hormone inducible transmembrane protein	AK168678|Ghitm|66092|growth hormone inducible transmembrane protein	AK146433|Ghitm|66092|growth hormone inducible transmembrane protein	AK134592|Ghitm|66092|growth hormone inducible transmembrane protein	AF412297|Ghitm|66092|growth hormone inducible transmembrane protein	AK005636|Ghitm|66092|growth hormone inducible transmembrane protein	AK164122|Ghitm|66092|growth hormone inducible transmembrane protein	NM_078478|Ghitm|66092|growth hormone inducible transmembrane protein	AK168800|Ghitm|66092|growth hormone inducible transmembrane protein	AK146853|Ghitm|66092|growth hormone inducible transmembrane protein	AK159724|Ghitm|66092|growth hormone inducible transmembrane protein	AK167970|Ghitm|66092|growth hormone inducible transmembrane protein	AK093887|Ghitm|66092|growth hormone inducible transmembrane protein	AK151488|Ghitm|66092|growth hormone inducible transmembrane protein	AK168022|Ghitm|66092|growth hormone inducible transmembrane protein	BC008622|Ghitm|66092|growth hormone inducible transmembrane protein	BC010224|Ghitm|66092|growth hormone inducible transmembrane protein	AK158904|Ghitm|66092|growth hormone inducible transmembrane protein
mm9_v1_chr8_-_72149070_72149075	0.10912	AACACUG	AK139223|Zfp868|234362|zinc finger protein 868	NM_001045553|Zfp868|234362|zinc finger protein 868
mm9_v1_chr2_+_21289168_21289199	0.106507	AACACUG	AK083234|Gpr158|241263|G protein-coupled receptor 158	AK086256|Gpr158|241263|G protein-coupled receptor 158	NM_001004761|Gpr158|241263|G protein-coupled receptor 158	AK030530|Gpr158|241263|G protein-coupled receptor 158
mm9_v1_chr2_+_152052575_152052697	0.105979	AACACUG	NM_007788|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	AK031617|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	AK146032|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	BC060742|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	U51866|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	AK158077|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	BC069919|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	AK011501|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	BC026149|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	BC089343|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide
mm9_v1_chr9_+_96159666_96159703	0.105452	AACACUG	NM_001184710|Tfdp2|211586|transcription factor Dp 2	NM_001184711|Tfdp2|211586|transcription factor Dp 2	AK158829|Tfdp2|211586|transcription factor Dp 2	BC092230|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr2_-_125450836_125450859	0.104368	AACACUG	AK041913|Cep152|99100|centrosomal protein 152	AK173060|Cep152|99100|centrosomal protein 152	NM_001081091|Cep152|99100|centrosomal protein 152
mm9_v1_chr11_-_66339627_66339627	0.102611	AACACUG	AK147504|Shisa6|380702|shisa homolog 6 (Xenopus laevis)	NM_001034874|Shisa6|380702|shisa homolog 6 (Xenopus laevis)
mm9_v1_chr5_+_58109246_58109263	0.102338	AACACUG	NM_001122758|Pcdh7|54216|protocadherin 7	NM_018764|Pcdh7|54216|protocadherin 7
mm9_v1_chr4_-_120597563_120597650	0.10092	AACACUG	BC023360|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)	AK014134|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)	NM_001160043|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)	NM_028457|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)
mm9_v1_chr16_+_43890014_43890036	0.100756	AACACUG	NM_027801|2610015P09Rik|212153|RIKEN cDNA 2610015P09 gene
mm9_v1_chr1_-_191511950_191512003	0.0965957	AACACUG	AK080758|Cenpf|108000|centromere protein F	AK029517|Cenpf|108000|centromere protein F	AK165236|Cenpf|108000|centromere protein F	NM_001081363|Cenpf|108000|centromere protein F
mm9_v1_chr5_+_33206352_33206425	0.0964933	AACACUG	BC072604|Depdc5|277854|DEP domain containing 5	NM_001025426|Depdc5|277854|DEP domain containing 5	NM_001170567|Depdc5|277854|DEP domain containing 5	NM_177786|Depdc5|277854|DEP domain containing 5	AK052458|Depdc5|277854|DEP domain containing 5	AK166366|Depdc5|277854|DEP domain containing 5	AK043137|Depdc5|277854|DEP domain containing 5	AK172587|Depdc5|277854|DEP domain containing 5	AK078771|Depdc5|277854|DEP domain containing 5	AK136321|Depdc5|277854|DEP domain containing 5
mm9_v1_chr12_+_4924157_4924219	0.0950159	AACACUG	AK161170|Atad2b|320817|ATPase family, AAA domain containing 2B	NM_001099628|Atad2b|320817|ATPase family, AAA domain containing 2B	AK080580|Atad2b|320817|ATPase family, AAA domain containing 2B	AK085232|Atad2b|320817|ATPase family, AAA domain containing 2B
mm9_v1_chr19_-_24975686_24975798	0.0918482	AACACUG	BC138432|Foxd4|14237|forkhead box D4	BC138434|Foxd4|14237|forkhead box D4	NM_008022|Foxd4|14237|forkhead box D4
mm9_v1_chr2_-_28695789_28695879	0.091133	AACACUG	BC117920|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	BC117919|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK030351|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	BC095998|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	BC061476|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK146401|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK146403|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK150650|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK151179|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK153102|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK141269|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	NM_001166033|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	NM_172977|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4
mm9_v1_chr13_-_40825789_40825811	0.0894286	AACACUG	U17287|Tcfap2a|21418|transcription factor AP-2, alpha	AK053704|Tcfap2a|21418|transcription factor AP-2, alpha	NM_001122948|Tcfap2a|21418|transcription factor AP-2, alpha
mm9_v1_chr17_-_29052264_29052268	0.0867177	AACACUG	BC117930|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene	AK033585|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene	NM_172450|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene
mm9_v1_chr6_+_125142154_125142245	0.0858906	AACACUG	AK007615|Mrpl51|66493|mitochondrial ribosomal protein L51	AK012524|Mrpl51|66493|mitochondrial ribosomal protein L51	AK076130|Mrpl51|66493|mitochondrial ribosomal protein L51	BC094621|Mrpl51|66493|mitochondrial ribosomal protein L51	AK007256|Mrpl51|66493|mitochondrial ribosomal protein L51	AK010268|Mrpl51|66493|mitochondrial ribosomal protein L51	NM_025595|Mrpl51|66493|mitochondrial ribosomal protein L51	AK012126|Mrpl51|66493|mitochondrial ribosomal protein L51	BC021535|Mrpl51|66493|mitochondrial ribosomal protein L51	AK011966|Mrpl51|66493|mitochondrial ribosomal protein L51	BC100602|Mrpl51|66493|mitochondrial ribosomal protein L51	AB049960|Mrpl51|66493|mitochondrial ribosomal protein L51
mm9_v1_chr11_-_78959855_78959908	0.084708	AACACUG	NM_013571|Ksr1|16706|kinase suppressor of ras 1	U43585|Ksr1|16706|kinase suppressor of ras 1	AK036566|Ksr1|16706|kinase suppressor of ras 1
mm9_v1_chr16_-_35363927_35364003	0.0842249	AACACUG	AK037540|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	AK044615|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	AK007341|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	AK082516|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	NM_133704|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)
mm9_v1_chr9_-_45012097_45012172	0.0840291	AACACUG	BC021368|Tmprss4|214523|transmembrane protease, serine 4	AY043240|Tmprss4|214523|transmembrane protease, serine 4	NM_145403|Tmprss4|214523|transmembrane protease, serine 4	AK078890|Tmprss4|214523|transmembrane protease, serine 4
mm9_v1_chr7_+_28043740_28043802	0.0836239	AACACUG	NM_010950|Numbl|18223|numb-like
mm9_v1_chr13_+_81796756_81796839	0.0829684	AACACUG	BC003322|Lysmd3|80289|LysM, putative peptidoglycan-binding, domain containing 3	NM_030257|Lysmd3|80289|LysM, putative peptidoglycan-binding, domain containing 3	AK029514|Lysmd3|80289|LysM, putative peptidoglycan-binding, domain containing 3
mm9_v1_chr12_+_96930429_96930467	0.0817411	AACACUG	AK135149|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	NM_201518|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	AK136973|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	BC067058|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	AK041311|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	BC096471|Flrt2|399558|fibronectin leucine rich transmembrane protein 2
mm9_v1_chr18_+_20469364_20469373	0.0799475	AACACUG	BC154410|Dsg1a|13510|desmoglein 1 alpha	NM_010079|Dsg1a|13510|desmoglein 1 alpha
mm9_v1_chr18_+_14941735_14941757	0.0787819	AACACUG	AK012135|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_001100449|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr11_+_76220643_76220715	0.0785315	AACACUG	NM_019818|Timm22|56322|translocase of inner mitochondrial membrane 22 homolog (yeast)	NM_023355|Timm22|56322|translocase of inner mitochondrial membrane 22 homolog (yeast)	BC055279|Timm22|56322|translocase of inner mitochondrial membrane 22 homolog (yeast)	AK011745|Timm22|56322|translocase of inner mitochondrial membrane 22 homolog (yeast)	AK012130|Timm22|56322|translocase of inner mitochondrial membrane 22 homolog (yeast)	AK017389|Timm22|56322|translocase of inner mitochondrial membrane 22 homolog (yeast)	AK028132|Timm22|56322|translocase of inner mitochondrial membrane 22 homolog (yeast)	AK153837|Timm22|56322|translocase of inner mitochondrial membrane 22 homolog (yeast)	AF223950|Timm22|56322|translocase of inner mitochondrial membrane 22 homolog (yeast)	BC022610|Timm22|56322|translocase of inner mitochondrial membrane 22 homolog (yeast)
mm9_v1_chr5_+_118695228_118695301	0.0777933	AACACUG	NM_001081236|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	AK090380|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	BC104372|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	BC104373|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene
mm9_v1_chr5_-_92512683_92512782	0.0765861	AACACUG	AF145285|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	U65313|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151965|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK152792|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK172256|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC048176|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK145697|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK076117|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK167186|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080795|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_011816|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr16_+_25683848_25683850	0.0756944	AACACUG	AK138305|Trp63|22061|transformation related protein 63	NM_001127259|Trp63|22061|transformation related protein 63	NM_001127260|Trp63|22061|transformation related protein 63	NM_001127261|Trp63|22061|transformation related protein 63
mm9_v1_chr5_+_87233514_87233581	0.0750169	AACACUG	NM_177680|Ythdc1|231386|YTH domain containing 1
mm9_v1_chr2_-_151567023_151567053	0.0745141	AACACUG	AK031363|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1	AK083431|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1	NM_212446|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1	AK053924|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1
mm9_v1_chr2_-_167457476_167457545	0.0745062	AACACUG	AK012021|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	BC003449|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	AK158230|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	NM_023230|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1
mm9_v1_chr7_-_99818410_99818452	0.0731479	AACACUG	AK161614|Pcf11|74737|cleavage and polyadenylation factor subunit homolog (S. cerevisiae)	BC030309|Pcf11|74737|cleavage and polyadenylation factor subunit homolog (S. cerevisiae)	NM_029078|Pcf11|74737|cleavage and polyadenylation factor subunit homolog (S. cerevisiae)	AK161260|Pcf11|74737|cleavage and polyadenylation factor subunit homolog (S. cerevisiae)
mm9_v1_chr5_+_125048757_125048805	0.0719041	AACACUG	AK031829|Tctn2|67978|tectonic family member 2	NM_026486|Tctn2|67978|tectonic family member 2	DQ278869|Tctn2|67978|tectonic family member 2	AK012720|Tctn2|67978|tectonic family member 2	AK014476|Tctn2|67978|tectonic family member 2	AK165102|Tctn2|67978|tectonic family member 2	AK083080|Tctn2|67978|tectonic family member 2	AK032378|Tctn2|67978|tectonic family member 2	AK087856|Tctn2|67978|tectonic family member 2	BC058375|Tctn2|67978|tectonic family member 2
mm9_v1_chr4_-_118905241_118905332	0.0712764	AACACUG	AK158349|AU022252|230696|expressed sequence AU022252	AK167445|AU022252|230696|expressed sequence AU022252	BC035522|AU022252|230696|expressed sequence AU022252	AK082225|4930538K18Rik|75180|RIKEN cDNA 4930538K18 gene	BC089614|AU022252|230696|expressed sequence AU022252	NM_001012400|AU022252|230696|expressed sequence AU022252
mm9_v1_chr5_-_97821348_97821397	0.0674795	AACACUG	AK135863|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	BC139104|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	BC145776|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	NM_001033191|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	AK133248|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	EU192141|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit
mm9_v1_chr6_+_29644178_29644255	0.0666431	AACACUG	AF276890|Tspan33|232670|tetraspanin 33	AK172176|Tspan33|232670|tetraspanin 33	AK004954|Tspan33|232670|tetraspanin 33	BC024685|Tspan33|232670|tetraspanin 33	NM_146173|Tspan33|232670|tetraspanin 33
mm9_v1_chr3_+_101890431_101890567	0.0648445	AACACUG	AF068244|Casq2|12373|calsequestrin 2	NM_009814|Casq2|12373|calsequestrin 2	BC092229|Casq2|12373|calsequestrin 2	BC137668|Casq2|12373|calsequestrin 2	BC140959|Casq2|12373|calsequestrin 2	U91483|Casq2|12373|calsequestrin 2
mm9_v1_chr2_+_32143769_32143812	0.059357	AACACUG	AK077516|Golga2|99412|golgi autoantigen, golgin subfamily a, 2	NM_001080968|Golga2|99412|golgi autoantigen, golgin subfamily a, 2	NM_133852|Golga2|99412|golgi autoantigen, golgin subfamily a, 2
mm9_v1_chr2_-_150514717_150514872	0.0590092	AACACUG	AF391758|Vsx1|114889|visual system homeobox 1 homolog (zebrafish)	AY056825|Vsx1|114889|visual system homeobox 1 homolog (zebrafish)	AK044393|Vsx1|114889|visual system homeobox 1 homolog (zebrafish)	AK044687|Vsx1|114889|visual system homeobox 1 homolog (zebrafish)	BC138456|Vsx1|114889|visual system homeobox 1 homolog (zebrafish)	BC138460|Vsx1|114889|visual system homeobox 1 homolog (zebrafish)	AF395732|Vsx1|114889|visual system homeobox 1 homolog (zebrafish)	BC057647|Vsx1|114889|visual system homeobox 1 homolog (zebrafish)	NM_054068|Vsx1|114889|visual system homeobox 1 homolog (zebrafish)
mm9_v1_chr5_-_72895711_72895778	0.0577962	AACACUG	BC093485|Corin|53419|corin	NM_001122756|Corin|53419|corin
mm9_v1_chr7_-_54175214_54175352	0.056811	AACACUG	AK185554|Tsg101|22088|tumor susceptibility gene 101	AK179695|Tsg101|22088|tumor susceptibility gene 101	AK014049|Tsg101|22088|tumor susceptibility gene 101	U52945|Tsg101|22088|tumor susceptibility gene 101	BC085308|Tsg101|22088|tumor susceptibility gene 101	AK146602|Tsg101|22088|tumor susceptibility gene 101	NM_021884|Tsg101|22088|tumor susceptibility gene 101	BC005424|Tsg101|22088|tumor susceptibility gene 101	AK146229|Tsg101|22088|tumor susceptibility gene 101	AK150369|Tsg101|22088|tumor susceptibility gene 101
mm9_v1_chr7_+_111054855_111054855	0.0556598	AACACUG	BC137766|Olfr65|18365|olfactory receptor 65	NM_013616|Olfr65|18365|olfactory receptor 65
mm9_v1_chr17_-_89599951_89600014	0.0547765	AACACUG	AF095642|Fshr|14309|follicle stimulating hormone receptor	BC137990|Fshr|14309|follicle stimulating hormone receptor	BC137991|Fshr|14309|follicle stimulating hormone receptor	AK016635|Fshr|14309|follicle stimulating hormone receptor	NM_013523|Fshr|14309|follicle stimulating hormone receptor
mm9_v1_chr1_+_55188086_55188145	0.0526392	AACACUG	NM_025283|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	AK162327|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	AK147857|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	AK020446|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC028500|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC037499|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC058168|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC052475|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	U01138|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)
mm9_v1_chr2_+_91297678_91297857	0.0496758	AACACUG	NM_001145857|Lrp4|228357|low density lipoprotein receptor-related protein 4	NM_172668|Lrp4|228357|low density lipoprotein receptor-related protein 4	BC132240|Lrp4|228357|low density lipoprotein receptor-related protein 4	AF247637|Lrp4|228357|low density lipoprotein receptor-related protein 4
mm9_v1_chr15_-_101966611_101966682	0.0495486	AACACUG	BC048820|Spryd3|223918|SPRY domain containing 3	NM_001033277|Spryd3|223918|SPRY domain containing 3	AK146689|Spryd3|223918|SPRY domain containing 3
mm9_v1_chr14_-_35401845_35401867	0.0482678	AACACUG	AK084461|Ldb3|24131|LIM domain binding 3	AK137181|Ldb3|24131|LIM domain binding 3	AJ005621|Ldb3|24131|LIM domain binding 3	NM_001039071|Ldb3|24131|LIM domain binding 3	NM_001039072|Ldb3|24131|LIM domain binding 3	NM_001039073|Ldb3|24131|LIM domain binding 3	NM_001039075|Ldb3|24131|LIM domain binding 3	NM_001039076|Ldb3|24131|LIM domain binding 3	NM_011918|Ldb3|24131|LIM domain binding 3	AK004020|Ldb3|24131|LIM domain binding 3
mm9_v1_chr15_-_73537796_73537934	0.0481661	AACACUG	BC117783|Gpr20|239530|G protein-coupled receptor 20	AK040547|Gpr20|239530|G protein-coupled receptor 20	NM_173365|Gpr20|239530|G protein-coupled receptor 20
mm9_v1_chr19_+_29441927_29441979	0.0460562	AACACUG	NM_021893|Cd274|60533|CD274 antigen	BC066841|Cd274|60533|CD274 antigen	AK080003|Cd274|60533|CD274 antigen	AK154403|Cd274|60533|CD274 antigen	AK089307|Cd274|60533|CD274 antigen
mm9_v1_chr1_+_141398282_141398309	0.0457274	AACACUG	NM_031164|F13b|14060|coagulation factor XIII, beta subunit	AK149397|F13b|14060|coagulation factor XIII, beta subunit	D10071|F13b|14060|coagulation factor XIII, beta subunit	BC030166|F13b|14060|coagulation factor XIII, beta subunit
mm9_v1_chr10_-_81007727_81007945	0.0447449	AACACUG	M55411|Gna11|14672|guanine nucleotide binding protein, alpha 11	BC011169|Gna11|14672|guanine nucleotide binding protein, alpha 11	AK143685|Gna11|14672|guanine nucleotide binding protein, alpha 11	NM_010301|Gna11|14672|guanine nucleotide binding protein, alpha 11
mm9_v1_chr19_-_41281263_41281324	0.0445575	AACACUG	BC132537|Tll2|24087|tolloid-like 2	BC145132|Tll2|24087|tolloid-like 2	NM_011904|Tll2|24087|tolloid-like 2	AF073526|Tll2|24087|tolloid-like 2
mm9_v1_chr2_+_37307751_37307773	0.044129	AACACUG	AK044346|Rabgap1|227800|RAB GTPase activating protein 1	NM_001033960|Rabgap1|227800|RAB GTPase activating protein 1
mm9_v1_chr11_-_3271367_3271408	0.0416524	AACACUG	AB005132|Limk2|16886|LIM motif-containing protein kinase 2	NM_173053|Limk2|16886|LIM motif-containing protein kinase 2
mm9_v1_chr4_-_108790578_108790640	0.0414275	AACACUG	BC089163|Osbpl9|100273|oxysterol binding protein-like 9	AK035658|Osbpl9|100273|oxysterol binding protein-like 9	AK172010|Osbpl9|100273|oxysterol binding protein-like 9	NM_001134791|Osbpl9|100273|oxysterol binding protein-like 9	NM_173350|Osbpl9|100273|oxysterol binding protein-like 9
mm9_v1_chr3_-_89568552_89568566	0.0271705	AACACUG	NM_009602|Chrnb2|11444|cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)
mm9_v1_chr6_-_42274556_42274690	0.0266256	AACACUG	AK163654|Fam131b|76156|family with sequence similarity 131, member B	AK047763|Fam131b|76156|family with sequence similarity 131, member B	AK018206|Fam131b|76156|family with sequence similarity 131, member B	AK018325|Fam131b|76156|family with sequence similarity 131, member B	AK158869|Fam131b|76156|family with sequence similarity 131, member B	NM_001113327|Fam131b|76156|family with sequence similarity 131, member B	NM_029528|Fam131b|76156|family with sequence similarity 131, member B
mm9_v1_chr10_+_127496002_127496084	0.0260598	AACACUG	AK008805|Ptges3|56351|prostaglandin E synthase 3 (cytosolic)	AY281130|Ptges3|56351|prostaglandin E synthase 3 (cytosolic)	AK010636|Ptges3|56351|prostaglandin E synthase 3 (cytosolic)	AK077538|Ptges3|56351|prostaglandin E synthase 3 (cytosolic)	NM_019766|Ptges3|56351|prostaglandin E synthase 3 (cytosolic)	AK167443|Ptges3|56351|prostaglandin E synthase 3 (cytosolic)
mm9_v1_chr1_+_17591981_17592085	0.0253148	AACACUG	AK030960|Pi15|94227|peptidase inhibitor 15	NM_053191|Pi15|94227|peptidase inhibitor 15	AK040961|Pi15|94227|peptidase inhibitor 15	AF329196|Pi15|94227|peptidase inhibitor 15	BC116705|Pi15|94227|peptidase inhibitor 15
mm9_v1_chr3_-_10301182_10301182	0.025173	AACACUG	BC030910|Fabp12|75497|fatty acid binding protein 12	NM_029310|Fabp12|75497|fatty acid binding protein 12
mm9_v1_chr7_+_27220131_27220231	0.0240492	AACACUG	AK087843|Nlrp4a|243880|NLR family, pyrin domain containing 4A	AY355341|Nlrp4a|243880|NLR family, pyrin domain containing 4A	NM_172896|Nlrp4a|243880|NLR family, pyrin domain containing 4A	BC141342|Nlrp4a|243880|NLR family, pyrin domain containing 4A	BC141343|Nlrp4a|243880|NLR family, pyrin domain containing 4A
mm9_v1_chr1_-_97564139_97564174	0.0231809	AACACUG	BC060112|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	AJ223956|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_001159745|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_009183|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	X86000|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm9_v1_chr11_-_102680467_102680523	0.022696	AACACUG	BC050840|Gjc1|14615|gap junction protein, gamma 1	NM_001159382|Gjc1|14615|gap junction protein, gamma 1	BC023153|Gjc1|14615|gap junction protein, gamma 1	AY390397|Gjc1|14615|gap junction protein, gamma 1
mm9_v1_chr10_+_70810540_70810588	0.019618	AACACUG	BC052463|Ipmk|69718|inositol polyphosphate multikinase	NM_027184|Ipmk|69718|inositol polyphosphate multikinase	AK036978|Ipmk|69718|inositol polyphosphate multikinase	AK010523|Ipmk|69718|inositol polyphosphate multikinase	AK172246|Ipmk|69718|inositol polyphosphate multikinase	AK171355|Ipmk|69718|inositol polyphosphate multikinase
mm9_v1_chr9_+_51856045_51856104	0.0195426	AACACUG	NM_001104617|Rdx|19684|radixin	NM_009041|Rdx|19684|radixin
mm9_v1_chr9_-_43921084_43921184	0.0188616	AACACUG	BC086757|Rnf26|213211|ring finger protein 26	BC063251|Rnf26|213211|ring finger protein 26	NM_153762|Rnf26|213211|ring finger protein 26	BC004739|Rnf26|213211|ring finger protein 26
mm9_v1_chr5_+_24191614_24191659	0.0187994	AACACUG	AK086301|Nub1|53312|negative regulator of ubiquitin-like proteins 1	NM_016736|Nub1|53312|negative regulator of ubiquitin-like proteins 1
mm9_v1_chr19_+_6184321_6184495	0.0157399	AACACUG	AK028710|1700123I01Rik|622554|RIKEN cDNA 1700123I01 gene	AK007250|1700123I01Rik|622554|RIKEN cDNA 1700123I01 gene	NM_001165919|1700123I01Rik|622554|RIKEN cDNA 1700123I01 gene	BC138005|1700123I01Rik|622554|RIKEN cDNA 1700123I01 gene	BC145092|1700123I01Rik|622554|RIKEN cDNA 1700123I01 gene
mm9_v1_chr7_-_54213800_54213896	0.0111851	AACACUG	AK018394|Uevld|54122|UEV and lactate/malate dehyrogenase domains	AK155685|Uevld|54122|UEV and lactate/malate dehyrogenase domains	AK154536|Uevld|54122|UEV and lactate/malate dehyrogenase domains	U97571|Uevld|54122|UEV and lactate/malate dehyrogenase domains	NM_001040695|Uevld|54122|UEV and lactate/malate dehyrogenase domains	BC054796|Uevld|54122|UEV and lactate/malate dehyrogenase domains
mm9_v1_chr1_-_155033576_155033576	0.00947439	AACACUG	AK147105|Lamc2|16782|laminin, gamma 2	NM_008485|Lamc2|16782|laminin, gamma 2
mm9_v1_chr14_-_47441795_47441916	0.00802654	AACACUG	AB001732|Gmfb|63985|glia maturation factor, beta	BC040233|Gmfb|63985|glia maturation factor, beta	AB050013|Gmfb|63985|glia maturation factor, beta	BC049134|Gmfb|63985|glia maturation factor, beta	AK013970|Gmfb|63985|glia maturation factor, beta	AK013947|Gmfb|63985|glia maturation factor, beta	AF297220|Gmfb|63985|glia maturation factor, beta	AK142014|Gmfb|63985|glia maturation factor, beta	NM_022023|Gmfb|63985|glia maturation factor, beta
mm9_v1_chr7_+_16986478_16986599	0.0046046	AACACUG	NM_198631|Zc3h4|330474|zinc finger CCCH-type containing 4	AK151148|Zc3h4|330474|zinc finger CCCH-type containing 4	AK151306|Zc3h4|330474|zinc finger CCCH-type containing 4	BC057627|Zc3h4|330474|zinc finger CCCH-type containing 4
mm9_v1_chr12_+_39506844_39506916	0.00424338	AACACUG	NM_007960|Etv1|14009|ets variant gene 1	L10426|Etv1|14009|ets variant gene 1	AK144713|Etv1|14009|ets variant gene 1	BC005645|Etv1|14009|ets variant gene 1
mm9_v1_chr5_+_145992583_145992654	0.0039594	AACACUG	AK161949|Zfp655|72611|zinc finger protein 655	NM_001083958|Zfp655|72611|zinc finger protein 655	BC060660|Zfp655|72611|zinc finger protein 655	AK018500|Zfp655|72611|zinc finger protein 655	BC061032|Zfp655|72611|zinc finger protein 655	AK220552|Zfp655|72611|zinc finger protein 655	BC062945|Zfp655|72611|zinc finger protein 655	NM_028298|Zfp655|72611|zinc finger protein 655	AK012336|Zfp655|72611|zinc finger protein 655	BC019153|Zfp655|72611|zinc finger protein 655	BC034731|Zfp655|72611|zinc finger protein 655
mm9_v1_chr2_-_156817751_156817861	0.00280146	AACACUG	AK002272|Ndrg3|29812|N-myc downstream regulated gene 3	AB033922|Ndrg3|29812|N-myc downstream regulated gene 3	BC018504|Ndrg3|29812|N-myc downstream regulated gene 3	AK036277|Ndrg3|29812|N-myc downstream regulated gene 3	AK037487|Ndrg3|29812|N-myc downstream regulated gene 3	AK029378|Ndrg3|29812|N-myc downstream regulated gene 3	AK004689|Ndrg3|29812|N-myc downstream regulated gene 3	AK154927|Ndrg3|29812|N-myc downstream regulated gene 3	NM_013865|Ndrg3|29812|N-myc downstream regulated gene 3	NM_180956|Ndrg3|29812|N-myc downstream regulated gene 3
mm9_v1_chr9_-_39764653_39764653	0.00269924	AACACUG	BC119350|Olfr976|258364|olfactory receptor 976	BC120621|Olfr976|258364|olfactory receptor 976	NM_146367|Olfr976|258364|olfactory receptor 976
mm9_v1_chr18_-_6516073_6516084	0.00181179	AACACUG	AK148194|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	AF079765|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	NM_007935|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)
