mm9_v1_chr16_-_92697567_92697590	14.8201	AAGGUGC	AK155262|Runx1|12394|runt related transcription factor 1	D26532|Runx1|12394|runt related transcription factor 1	NM_001111023|Runx1|12394|runt related transcription factor 1	NM_009821|Runx1|12394|runt related transcription factor 1
mm9_v1_chr16_-_92826307_92826318	11.4558	AAGGUGC	AK165307|Runx1|12394|runt related transcription factor 1	AK145098|Runx1|12394|runt related transcription factor 1	NM_001111021|Runx1|12394|runt related transcription factor 1	NM_001111022|Runx1|12394|runt related transcription factor 1	AK040240|Runx1|12394|runt related transcription factor 1
mm9_v1_chr3_+_60305108_60305212	10.912	AAGGUGC	AK162039|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK149405|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AB093240|Mbnl1|56758|muscleblind-like 1 (Drosophila)	NM_020007|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK088871|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK153848|Mbnl1|56758|muscleblind-like 1 (Drosophila)	BC060031|Mbnl1|56758|muscleblind-like 1 (Drosophila)	BC096600|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr15_+_78813475_78813522	10.0556	AAGGUGC	NM_001024716|Triobp|110253|TRIO and F-actin binding protein	BC053329|Triobp|110253|TRIO and F-actin binding protein	AK085512|Triobp|110253|TRIO and F-actin binding protein
mm9_v1_chr13_-_41454358_41454379	10.0527	AAGGUGC	AK054179|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AK033729|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	NM_017464|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9
mm9_v1_chr10_-_18731766_18731781	9.99082	AAGGUGC	AK171326|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK172529|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	NM_001166402|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3
mm9_v1_chr16_+_24721940_24721951	9.80119	AAGGUGC	AK029567|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	NM_001145954|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK076989|Lpp|210126|LIM domain containing preferred translocation partner in lipoma
mm9_v1_chr5_+_75971011_75971052	9.27905	AAGGUGC	NM_001122733|Kit|16590|kit oncogene	NM_021099|Kit|16590|kit oncogene	AK046795|Kit|16590|kit oncogene	AK047010|Kit|16590|kit oncogene	BC026713|Kit|16590|kit oncogene	BC075716|Kit|16590|kit oncogene	BC052457|Kit|16590|kit oncogene	Y00864|Kit|16590|kit oncogene	AY536430|Kit|16590|kit oncogene	AY536431|Kit|16590|kit oncogene
mm9_v1_chr16_+_24393435_24393655	9.01433	AAGGUGC	NM_178665|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK168431|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK085626|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK051345|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK045288|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK045341|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK051937|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK086307|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK169780|Lpp|210126|LIM domain containing preferred translocation partner in lipoma
mm9_v1_chr16_+_24448176_24448242	8.64433	AAGGUGC	AK054550|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	NM_001145952|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	BC085321|Lpp|210126|LIM domain containing preferred translocation partner in lipoma
mm9_v1_chr10_-_18735154_18735215	8.078	AAGGUGC	AK153238|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK088297|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK151921|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC050259|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC054806|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC060221|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	NM_009397|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3
mm9_v1_chr10_+_40069113_40069226	7.98864	AAGGUGC	AK122421|Cdk19|78334|cyclin-dependent kinase 19	NM_001168304|Cdk19|78334|cyclin-dependent kinase 19	NM_198164|Cdk19|78334|cyclin-dependent kinase 19	AK053651|Cdk19|78334|cyclin-dependent kinase 19	BC137614|Cdk19|78334|cyclin-dependent kinase 19	BC144782|Cdk19|78334|cyclin-dependent kinase 19	BC080280|Cdk19|78334|cyclin-dependent kinase 19
mm9_v1_chr5_+_97426665_97426877	7.79603	AAGGUGC	AY050249|Bmp2k|140780|BMP2 inducible kinase	NM_080708|Bmp2k|140780|BMP2 inducible kinase	AK046752|Bmp2k|140780|BMP2 inducible kinase
mm9_v1_chr3_-_30868320_30868353	7.53192	AAGGUGC	BC132533|Phc3|241915|polyhomeotic-like 3 (Drosophila)	BC145123|Phc3|241915|polyhomeotic-like 3 (Drosophila)	BC145124|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AJ414610|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK037348|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK087339|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK166208|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK166296|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165954|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165955|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165956|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_153421|Phc3|241915|polyhomeotic-like 3 (Drosophila)
mm9_v1_chr13_-_41582649_41582707	7.05262	AAGGUGC	BC053713|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AK083374|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AK030985|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AF009366|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	NM_001111324|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9
mm9_v1_chr15_+_78778153_78778153	6.95205	AAGGUGC	DQ228000|Triobp|110253|TRIO and F-actin binding protein	DQ228001|Triobp|110253|TRIO and F-actin binding protein	DQ228002|Triobp|110253|TRIO and F-actin binding protein	NM_001039155|Triobp|110253|TRIO and F-actin binding protein	NM_001039156|Triobp|110253|TRIO and F-actin binding protein	NM_138579|Triobp|110253|TRIO and F-actin binding protein
mm9_v1_chr2_+_112106470_112106612	6.85632	AAGGUGC	BC062099|Slc12a6|107723|solute carrier family 12, member 6	NM_133649|Slc12a6|107723|solute carrier family 12, member 6
mm9_v1_chr8_-_36558514_36558598	6.05341	AAGGUGC	AK165026|Eri1|67276|exoribonuclease 1	BC046412|Eri1|67276|exoribonuclease 1	AK172005|Eri1|67276|exoribonuclease 1	AK144223|Eri1|67276|exoribonuclease 1	AK014041|Eri1|67276|exoribonuclease 1	AK014410|Eri1|67276|exoribonuclease 1	NM_026067|Eri1|67276|exoribonuclease 1
mm9_v1_chr5_+_32438843_32438906	6.02272	AAGGUGC	NM_008037|Fosl2|14284|fos-like antigen 2	BC065131|Fosl2|14284|fos-like antigen 2
mm9_v1_chr13_-_46060325_46060353	5.97297	AAGGUGC	BC058178|Atxn1|20238|ataxin 1	AK048268|Atxn1|20238|ataxin 1	NM_009124|Atxn1|20238|ataxin 1	AK169931|Atxn1|20238|ataxin 1
mm9_v1_chr4_+_118102305_118102319	5.56999	AAGGUGC	BC006735|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	NM_001039176|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
mm9_v1_chr2_+_112124767_112124844	5.28046	AAGGUGC	AF211855|Slc12a6|107723|solute carrier family 12, member 6	NM_133648|Slc12a6|107723|solute carrier family 12, member 6
mm9_v1_chr6_+_133985717_133985901	4.73498	AAGGUGC	AK155150|Etv6|14011|ets variant gene 6 (TEL oncogene)	NM_007961|Etv6|14011|ets variant gene 6 (TEL oncogene)	AK154569|Etv6|14011|ets variant gene 6 (TEL oncogene)
mm9_v1_chr11_+_69579376_69579461	4.7239	AAGGUGC	AK163593|Zbtb4|75580|zinc finger and BTB domain containing 4	NM_029348|Zbtb4|75580|zinc finger and BTB domain containing 4	AK147212|Zbtb4|75580|zinc finger and BTB domain containing 4
mm9_v1_chr11_-_94538693_94538823	4.72164	AAGGUGC	AJ291751|Xylt2|217119|xylosyltransferase II	AK086804|Xylt2|217119|xylosyltransferase II	AK150521|Xylt2|217119|xylosyltransferase II	AK153332|Xylt2|217119|xylosyltransferase II	AK083482|Xylt2|217119|xylosyltransferase II	AK158056|Xylt2|217119|xylosyltransferase II	NM_145828|Xylt2|217119|xylosyltransferase II
mm9_v1_chr15_+_80541675_80541764	4.57207	AAGGUGC	AK048628|Tnrc6b|213988|trinucleotide repeat containing 6b	NM_144812|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr13_-_112599181_112599204	4.48908	AAGGUGC	AB014614|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	AF117340|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	NM_011945|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1
mm9_v1_chr6_-_134742645_134742743	4.38357	AAGGUGC	AK144800|Dusp16|70686|dual specificity phosphatase 16	NM_001048054|Dusp16|70686|dual specificity phosphatase 16	NM_130447|Dusp16|70686|dual specificity phosphatase 16
mm9_v1_chr4_+_118100682_118100801	4.3774	AAGGUGC	NM_001039175|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	NM_019422|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK156003|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK171217|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK135348|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	BC096673|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK003743|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
mm9_v1_chr7_+_134913327_134913502	4.11887	AAGGUGC	AK136955|Orai3|269999|ORAI calcium release-activated calcium modulator 3	NM_198424|Orai3|269999|ORAI calcium release-activated calcium modulator 3	AK037138|Orai3|269999|ORAI calcium release-activated calcium modulator 3	BC061259|Orai3|269999|ORAI calcium release-activated calcium modulator 3	AB271216|Orai3|269999|ORAI calcium release-activated calcium modulator 3	AM712358|Orai3|269999|ORAI calcium release-activated calcium modulator 3
mm9_v1_chr9_+_30838224_30838249	4.11574	AAGGUGC	AK036895|Zbtb44|235132|zinc finger and BTB domain containing 44	NM_001115130|Zbtb44|235132|zinc finger and BTB domain containing 44	NM_172765|Zbtb44|235132|zinc finger and BTB domain containing 44
mm9_v1_chr6_+_140572056_140572226	4.10471	AAGGUGC	NM_001005605|Aebp2|11569|AE binding protein 2
mm9_v1_chr18_-_39646734_39646900	4.04793	AAGGUGC	AK037733|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	DQ504162|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	HM236293|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13358|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13359|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	NM_008173|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129912|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129913|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X04435|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr4_+_64785207_64785207	4.03568	AAGGUGC	NM_021362|Pappa|18491|pregnancy-associated plasma protein A
mm9_v1_chr8_-_112261607_112261664	4.00489	AAGGUGC	AK089170|Atxn1l|52335|ataxin 1-like	NM_001080930|Atxn1l|52335|ataxin 1-like	AK172521|Atxn1l|52335|ataxin 1-like
mm9_v1_chr16_-_50432421_50432504	3.90251	AAGGUGC	AK044855|Bbx|70508|bobby sox homolog (Drosophila)	BC019456|Bbx|70508|bobby sox homolog (Drosophila)	BC066821|Bbx|70508|bobby sox homolog (Drosophila)	AF276951|Bbx|70508|bobby sox homolog (Drosophila)	BC064763|Bbx|70508|bobby sox homolog (Drosophila)	BC057869|Bbx|70508|bobby sox homolog (Drosophila)	AK157813|Bbx|70508|bobby sox homolog (Drosophila)	AK049516|Bbx|70508|bobby sox homolog (Drosophila)	AF454943|Bbx|70508|bobby sox homolog (Drosophila)	AK017487|Bbx|70508|bobby sox homolog (Drosophila)	AK029747|Bbx|70508|bobby sox homolog (Drosophila)	AK167724|Bbx|70508|bobby sox homolog (Drosophila)	NM_027444|Bbx|70508|bobby sox homolog (Drosophila)
mm9_v1_chr18_+_76401531_76401583	3.79265	AAGGUGC	BC021342|Smad2|17126|MAD homolog 2 (Drosophila)	AK007817|Smad2|17126|MAD homolog 2 (Drosophila)	NM_010754|Smad2|17126|MAD homolog 2 (Drosophila)
mm9_v1_chr2_+_163899842_163899948	3.76646	AAGGUGC	BC054521|Stk4|58231|serine/threonine kinase 4	AF271360|Stk4|58231|serine/threonine kinase 4	AK028838|Stk4|58231|serine/threonine kinase 4	NM_021420|Stk4|58231|serine/threonine kinase 4
mm9_v1_chr10_+_43198945_43198945	3.65068	AAGGUGC	BC060240|Bend3|331623|BEN domain containing 3	NM_199028|Bend3|331623|BEN domain containing 3
mm9_v1_chr9_+_118835589_118835685	3.53001	AAGGUGC	AJ344340|Ctdspl|69274|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	AK013115|Ctdspl|69274|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	NM_133710|Ctdspl|69274|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
mm9_v1_chr2_-_34769479_34769559	3.36109	AAGGUGC	BC027776|Phf19|74016|PHD finger protein 19	AK014380|Phf19|74016|PHD finger protein 19	NM_028716|Phf19|74016|PHD finger protein 19	AK014030|Phf19|74016|PHD finger protein 19
mm9_v1_chr1_+_136456754_136456771	3.36072	AAGGUGC	NM_152895|Kdm5b|75605|lysine (K)-specific demethylase 5B	AK220451|Kdm5b|75605|lysine (K)-specific demethylase 5B	AY082429|Kdm5b|75605|lysine (K)-specific demethylase 5B	AY082430|Kdm5b|75605|lysine (K)-specific demethylase 5B	BC048180|Kdm5b|75605|lysine (K)-specific demethylase 5B	BC057318|Kdm5b|75605|lysine (K)-specific demethylase 5B
mm9_v1_chr10_-_5734448_5734544	3.24768	AAGGUGC	EU791538|Esr1|13982|estrogen receptor 1 (alpha)	AK036627|Esr1|13982|estrogen receptor 1 (alpha)	NM_007956|Esr1|13982|estrogen receptor 1 (alpha)	AJ272164|Esr1|13982|estrogen receptor 1 (alpha)	AK039911|Esr1|13982|estrogen receptor 1 (alpha)	AK041525|Esr1|13982|estrogen receptor 1 (alpha)	AK033270|Esr1|13982|estrogen receptor 1 (alpha)
mm9_v1_chr1_-_63160764_63160840	3.24636	AAGGUGC	AK049468|Ino80d|227195|INO80 complex subunit D	NM_001081436|Ino80d|227195|INO80 complex subunit D	NM_001114609|Ino80d|227195|INO80 complex subunit D
mm9_v1_chr5_-_73647856_73647874	3.23903	AAGGUGC	AK164590|Fryl|72313|furry homolog-like (Drosophila)	NM_028194|Fryl|72313|furry homolog-like (Drosophila)
mm9_v1_chr12_+_75008853_75009062	3.20248	AAGGUGC	NM_010431|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK034087|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK150367|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK138944|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK017853|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	BC026139|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AF003695|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr11_+_4167080_4167097	3.1293	AAGGUGC	AK042018|Lif|16878|leukemia inhibitory factor	NM_001039537|Lif|16878|leukemia inhibitory factor
mm9_v1_chr15_+_80629020_80629144	2.97693	AAGGUGC	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr19_+_32832002_32832163	2.92095	AAGGUGC	NM_008960|Pten|19211|phosphatase and tensin homolog	AK164302|Pten|19211|phosphatase and tensin homolog	AK088717|Pten|19211|phosphatase and tensin homolog	AK076980|Pten|19211|phosphatase and tensin homolog
mm9_v1_chr3_+_97817440_97817471	2.90271	AAGGUGC	AK157200|Notch2|18129|Notch gene homolog 2 (Drosophila)	D32210|Notch2|18129|Notch gene homolog 2 (Drosophila)	NM_010928|Notch2|18129|Notch gene homolog 2 (Drosophila)
mm9_v1_chr13_-_48966240_48966272	2.89655	AAGGUGC	BC051633|Phf2|18676|PHD finger protein 2	AF043726|Phf2|18676|PHD finger protein 2	NM_011078|Phf2|18676|PHD finger protein 2
mm9_v1_chr11_+_4157570_4157570	2.8182	AAGGUGC	NM_008501|Lif|16878|leukemia inhibitory factor
mm9_v1_chr3_-_100914081_100914100	2.51979	AAGGUGC	AF152344|Ptgfrn|19221|prostaglandin F2 receptor negative regulator	NM_011197|Ptgfrn|19221|prostaglandin F2 receptor negative regulator	BC145713|Ptgfrn|19221|prostaglandin F2 receptor negative regulator	BC145715|Ptgfrn|19221|prostaglandin F2 receptor negative regulator
mm9_v1_chr10_+_87321789_87322010	2.47321	AAGGUGC	NM_001111275|Igf1|16000|insulin-like growth factor 1	NM_010512|Igf1|16000|insulin-like growth factor 1	AK050118|Igf1|16000|insulin-like growth factor 1	AK081019|Igf1|16000|insulin-like growth factor 1	AK165471|Igf1|16000|insulin-like growth factor 1	AY878192|Igf1|16000|insulin-like growth factor 1	AY878193|Igf1|16000|insulin-like growth factor 1	AK052033|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr2_-_24775083_24775154	2.36917	AAGGUGC	AK054555|Ehmt1|77683|euchromatic histone methyltransferase 1	AK052174|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_001012518|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_001109686|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_001109687|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_172545|Ehmt1|77683|euchromatic histone methyltransferase 1	AK084994|Ehmt1|77683|euchromatic histone methyltransferase 1	AK043898|Ehmt1|77683|euchromatic histone methyltransferase 1	AK082062|Ehmt1|77683|euchromatic histone methyltransferase 1	AB205007|Ehmt1|77683|euchromatic histone methyltransferase 1
mm9_v1_chr16_+_94085504_94085555	2.31304	AAGGUGC	NM_011377|Sim2|20465|single-minded homolog 2 (Drosophila)	D63383|Sim2|20465|single-minded homolog 2 (Drosophila)	D64135|Sim2|20465|single-minded homolog 2 (Drosophila)
mm9_v1_chr17_+_86020173_86020181	2.29023	AAGGUGC	NM_011381|Six3|20473|sine oculis-related homeobox 3 homolog (Drosophila)
mm9_v1_chr17_+_78599556_78599594	2.18511	AAGGUGC	NM_015800|Crim1|50766|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm9_v1_chr7_+_108257288_108257396	2.14106	AAGGUGC	AK141949|Fchsd2|207278|FCH and double SH3 domains 2	NM_001146010|Fchsd2|207278|FCH and double SH3 domains 2	NM_199012|Fchsd2|207278|FCH and double SH3 domains 2	BC016532|Fchsd2|207278|FCH and double SH3 domains 2	AK140322|Fchsd2|207278|FCH and double SH3 domains 2	AK157054|Fchsd2|207278|FCH and double SH3 domains 2	AK156841|Fchsd2|207278|FCH and double SH3 domains 2	BC060647|Fchsd2|207278|FCH and double SH3 domains 2	AK165341|Fchsd2|207278|FCH and double SH3 domains 2	AK122368|Fchsd2|207278|FCH and double SH3 domains 2
mm9_v1_chr16_+_44139908_44140168	2.09856	AAGGUGC	NM_028108|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK167141|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK168394|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC057117|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK135658|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK156791|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK011160|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK145345|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC046283|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC004086|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK198408|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC055846|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm9_v1_chr6_+_140571183_140571183	2.0957	AAGGUGC	AK029011|Aebp2|11569|AE binding protein 2	NM_178803|Aebp2|11569|AE binding protein 2
mm9_v1_chr2_+_36085945_36085997	2.06464	AAGGUGC	AK159907|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	NM_008969|Ptgs1|19224|prostaglandin-endoperoxide synthase 1
mm9_v1_chr3_-_9610062_9610137	1.97333	AAGGUGC	AF292939|Zfp704|170753|zinc finger protein 704	NM_133218|Zfp704|170753|zinc finger protein 704
mm9_v1_chr8_+_47825098_47825208	1.90559	AAGGUGC	NM_008391|Irf2|16363|interferon regulatory factor 2	AK087926|Irf2|16363|interferon regulatory factor 2	AK155025|Irf2|16363|interferon regulatory factor 2	BC110666|Irf2|16363|interferon regulatory factor 2	BC006577|Irf2|16363|interferon regulatory factor 2	AK036652|Irf2|16363|interferon regulatory factor 2	J03168|Irf2|16363|interferon regulatory factor 2
mm9_v1_chr4_+_105988790_105988840	1.90492	AAGGUGC	NM_183225|Usp24|329908|ubiquitin specific peptidase 24	AK045043|Usp24|329908|ubiquitin specific peptidase 24
mm9_v1_chr13_-_94269616_94269653	1.88493	AAGGUGC	BC069906|Jmy|57748|junction-mediating and regulatory protein	BC090835|Jmy|57748|junction-mediating and regulatory protein	NM_021310|Jmy|57748|junction-mediating and regulatory protein
mm9_v1_chr1_+_40496493_40496633	1.88062	AAGGUGC	NM_010743|Il1rl1|17082|interleukin 1 receptor-like 1	AK033417|Il1rl1|17082|interleukin 1 receptor-like 1	AK145118|Il1rl1|17082|interleukin 1 receptor-like 1	Y07519|Il1rl1|17082|interleukin 1 receptor-like 1	M24843|Il1rl1|17082|interleukin 1 receptor-like 1
mm9_v1_chr12_+_3426883_3427022	1.85527	AAGGUGC	AK080679|Asxl2|75302|additional sex combs like 2 (Drosophila)	NM_172421|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK036839|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK142135|Asxl2|75302|additional sex combs like 2 (Drosophila)	BC141140|Asxl2|75302|additional sex combs like 2 (Drosophila)
mm9_v1_chr11_+_77499638_77499656	1.75019	AAGGUGC	AK030113|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK160601|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	NM_001024205|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK170764|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK122494|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2
mm9_v1_chr3_+_96500993_96501007	1.7116	AAGGUGC	NM_001165949|Pias3|229615|protein inhibitor of activated STAT 3	NM_018812|Pias3|229615|protein inhibitor of activated STAT 3
mm9_v1_chr9_-_53344748_53344787	1.66799	AAGGUGC	AK031702|Atm|11920|ataxia telangiectasia mutated homolog (human)	NM_007499|Atm|11920|ataxia telangiectasia mutated homolog (human)	AK139863|Atm|11920|ataxia telangiectasia mutated homolog (human)
mm9_v1_chr13_-_74429744_74429778	1.65711	AAGGUGC	AK154152|Ahrr|11624|aryl-hydrocarbon receptor repressor	BC118534|Ahrr|11624|aryl-hydrocarbon receptor repressor	AB015140|Ahrr|11624|aryl-hydrocarbon receptor repressor	NM_009644|Ahrr|11624|aryl-hydrocarbon receptor repressor	AK155711|Ahrr|11624|aryl-hydrocarbon receptor repressor	AK154761|Ahrr|11624|aryl-hydrocarbon receptor repressor
mm9_v1_chr9_-_88376937_88377419	1.649	AAGGUGC	BC080309|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC108363|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK083398|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK077588|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC050079|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC055863|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK076026|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AB035725|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK034845|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC041148|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC058807|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019666|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019796|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein
mm9_v1_chr3_-_38383688_38383798	1.64579	AAGGUGC	AK129484|Ankrd50|99696|ankyrin repeat domain 50	NM_001167883|Ankrd50|99696|ankyrin repeat domain 50
mm9_v1_chr10_+_79957650_79957698	1.57887	AAGGUGC	BC058700|Onecut3|246086|one cut domain, family member 3	NM_139226|Onecut3|246086|one cut domain, family member 3	AY080897|Onecut3|246086|one cut domain, family member 3
mm9_v1_chr3_-_146475652_146475990	1.56905	AAGGUGC	AK193506|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK204631|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK216103|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	J02626|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	BC054533|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK048319|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	NM_011100|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK031441|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr11_+_58028478_58028480	1.5226	AAGGUGC	AK142291|Irgm2|54396|immunity-related GTPase family M member 2	NM_019440|Irgm2|54396|immunity-related GTPase family M member 2
mm9_v1_chr8_-_70498472_70498472	1.46188	AAGGUGC	AB220685|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_177698|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr14_-_20642973_20643066	1.3923	AAGGUGC	AK162433|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK148686|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK162070|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK160555|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK012451|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	BC023932|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	BC096571|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK012460|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK003732|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	BC048357|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK012486|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	NM_026528|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK160696|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene
mm9_v1_chr12_-_85559793_85559836	1.3834	AAGGUGC	AK155768|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	NM_001163501|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene
mm9_v1_chr13_+_34094742_34094742	1.35048	AAGGUGC	BC050905|Ripk1|19766|receptor (TNFRSF)-interacting serine-threonine kinase 1	BC054542|Ripk1|19766|receptor (TNFRSF)-interacting serine-threonine kinase 1	NM_009068|Ripk1|19766|receptor (TNFRSF)-interacting serine-threonine kinase 1
mm9_v1_chr2_+_72123693_72123785	1.2761	AAGGUGC	AK132186|B230120H23Rik|65964|RIKEN cDNA B230120H23 gene	NM_023057|B230120H23Rik|65964|RIKEN cDNA B230120H23 gene	NM_001164791|B230120H23Rik|65964|RIKEN cDNA B230120H23 gene	NM_178084|B230120H23Rik|65964|RIKEN cDNA B230120H23 gene
mm9_v1_chr6_+_108778633_108778716	1.27294	AAGGUGC	AK030943|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	NM_138677|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AB042828|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AK151668|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AK152724|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AK129090|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AK152979|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AK082920|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	BC023237|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1
mm9_v1_chr1_-_132994093_132994119	1.23356	AAGGUGC	X76850|Mapkapk2|17164|MAP kinase-activated protein kinase 2	BC063064|Mapkapk2|17164|MAP kinase-activated protein kinase 2	NM_008551|Mapkapk2|17164|MAP kinase-activated protein kinase 2
mm9_v1_chr11_+_59120429_59120467	1.21607	AAGGUGC	AK087490|Wnt9a|216795|wingless-type MMTV integration site 9A	NM_139298|Wnt9a|216795|wingless-type MMTV integration site 9A	BC066165|Wnt9a|216795|wingless-type MMTV integration site 9A	AB072311|Wnt9a|216795|wingless-type MMTV integration site 9A
mm9_v1_chr5_-_116474254_116474473	1.20625	AAGGUGC	AK088250|Prkab1|19079|protein kinase, AMP-activated, beta 1 non-catalytic subunit	BC016398|Prkab1|19079|protein kinase, AMP-activated, beta 1 non-catalytic subunit	NM_031869|Prkab1|19079|protein kinase, AMP-activated, beta 1 non-catalytic subunit	AK153552|Prkab1|19079|protein kinase, AMP-activated, beta 1 non-catalytic subunit
mm9_v1_chr2_+_117937623_117937666	1.16336	AAGGUGC	AK080686|Thbs1|21825|thrombospondin 1	AK145202|Thbs1|21825|thrombospondin 1	AK163092|Thbs1|21825|thrombospondin 1	M87276|Thbs1|21825|thrombospondin 1	BC050917|Thbs1|21825|thrombospondin 1	NM_011580|Thbs1|21825|thrombospondin 1	BC020435|Thbs1|21825|thrombospondin 1	BC042422|Thbs1|21825|thrombospondin 1
mm9_v1_chr9_-_35007875_35007875	1.15379	AAGGUGC	AK080135|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	NM_001177845|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein
mm9_v1_chr11_+_29273673_29273774	1.14662	AAGGUGC	AK051140|Ccdc88a|108686|coiled coil domain containing 88A	NM_176841|Ccdc88a|108686|coiled coil domain containing 88A
mm9_v1_chr16_-_85901362_85901374	1.13423	AAGGUGC	NM_011782|Adamts5|23794|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm9_v1_chr16_-_22163264_22163371	1.1174	AAGGUGC	NM_183029|Igf2bp2|319765|insulin-like growth factor 2 mRNA binding protein 2
mm9_v1_chr14_+_70945429_70945513	1.10902	AAGGUGC	BC033929|Reep4|72549|receptor accessory protein 4	NM_180588|Reep4|72549|receptor accessory protein 4	AK187453|Reep4|72549|receptor accessory protein 4	AY562232|Reep4|72549|receptor accessory protein 4
mm9_v1_chr18_+_66618186_66618270	1.02499	AAGGUGC	AK143990|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	AK169914|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	AK043856|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	AK088556|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	AB041230|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	NM_021451|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	BC050821|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1
mm9_v1_chr2_+_154959216_154959300	1.00967	AAGGUGC	NM_008395|Itch|16396|itchy, E3 ubiquitin protein ligase	AK082003|Itch|16396|itchy, E3 ubiquitin protein ligase	AK163006|Itch|16396|itchy, E3 ubiquitin protein ligase	AK141800|Itch|16396|itchy, E3 ubiquitin protein ligase	AK037940|Itch|16396|itchy, E3 ubiquitin protein ligase	BC062934|Itch|16396|itchy, E3 ubiquitin protein ligase	AK020167|Itch|16396|itchy, E3 ubiquitin protein ligase	AK220164|Itch|16396|itchy, E3 ubiquitin protein ligase	AK048303|Itch|16396|itchy, E3 ubiquitin protein ligase	BC064678|Itch|16396|itchy, E3 ubiquitin protein ligase	AF037454|Itch|16396|itchy, E3 ubiquitin protein ligase
mm9_v1_chr15_+_73578455_73578455	1.00489	AAGGUGC	AK147489|Ptp4a3|19245|protein tyrosine phosphatase 4a3	NM_008975|Ptp4a3|19245|protein tyrosine phosphatase 4a3
mm9_v1_chr13_-_64254466_64254592	0.984266	AAGGUGC	BC119531|Zfp367|238673|zinc finger protein 367	BC119532|Zfp367|238673|zinc finger protein 367	AK033288|Zfp367|238673|zinc finger protein 367	NM_175494|Zfp367|238673|zinc finger protein 367	AK041331|Zfp367|238673|zinc finger protein 367	AK041361|Zfp367|238673|zinc finger protein 367	AK077686|Zfp367|238673|zinc finger protein 367
mm9_v1_chr2_-_153067043_153067211	0.983309	AAGGUGC	BC037664|Plagl2|54711|pleiomorphic adenoma gene-like 2	BC078453|Plagl2|54711|pleiomorphic adenoma gene-like 2	NM_018807|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK040626|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK133833|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK141713|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK150243|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK129087|Plagl2|54711|pleiomorphic adenoma gene-like 2
mm9_v1_chr9_-_35007458_35007549	0.97392	AAGGUGC	AF378130|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	AK168494|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	AK036431|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	AK151117|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	NM_001177847|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	NM_001177846|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	NM_054096|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein
mm9_v1_chr16_-_44028057_44028057	0.951826	AAGGUGC	AK029543|Gramd1c|207798|GRAM domain containing 1C	NM_001172107|Gramd1c|207798|GRAM domain containing 1C
mm9_v1_chr2_+_153067186_153067388	0.950772	AAGGUGC	NM_080463|Pofut1|140484|protein O-fucosyltransferase 1	BC046295|Pofut1|140484|protein O-fucosyltransferase 1	AK135635|Pofut1|140484|protein O-fucosyltransferase 1	AK044629|Pofut1|140484|protein O-fucosyltransferase 1	AF375885|Pofut1|140484|protein O-fucosyltransferase 1	AK037857|Pofut1|140484|protein O-fucosyltransferase 1	AK081059|Pofut1|140484|protein O-fucosyltransferase 1	AK132301|Pofut1|140484|protein O-fucosyltransferase 1	AK170038|Pofut1|140484|protein O-fucosyltransferase 1
mm9_v1_chr15_+_10882086_10882145	0.942245	AAGGUGC	AK128898|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	AF246265|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	AK029352|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	AK075867|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	AK081704|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	NM_030888|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	BC055047|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	BC019636|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	BC055859|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3
mm9_v1_chr3_+_96500294_96500403	0.927888	AAGGUGC	NM_146135|Pias3|229615|protein inhibitor of activated STAT 3	AK040619|Pias3|229615|protein inhibitor of activated STAT 3	AK077551|Pias3|229615|protein inhibitor of activated STAT 3	AK085503|Pias3|229615|protein inhibitor of activated STAT 3	BC023128|Pias3|229615|protein inhibitor of activated STAT 3
mm9_v1_chr1_+_52176281_52176465	0.923973	AAGGUGC	AK039458|Stat1|20846|signal transducer and activator of transcription 1	NM_009283|Stat1|20846|signal transducer and activator of transcription 1	AK159887|Stat1|20846|signal transducer and activator of transcription 1	AK082706|Stat1|20846|signal transducer and activator of transcription 1	AK018544|Stat1|20846|signal transducer and activator of transcription 1	AK041599|Stat1|20846|signal transducer and activator of transcription 1	AK041814|Stat1|20846|signal transducer and activator of transcription 1	AK084855|Stat1|20846|signal transducer and activator of transcription 1	BC004808|Stat1|20846|signal transducer and activator of transcription 1	AK088874|Stat1|20846|signal transducer and activator of transcription 1	AK157458|Stat1|20846|signal transducer and activator of transcription 1	AK157263|Stat1|20846|signal transducer and activator of transcription 1	AK046517|Stat1|20846|signal transducer and activator of transcription 1
mm9_v1_chr6_+_86992796_86992906	0.908745	AAGGUGC	AK087173|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	NM_013528|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AK019852|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AK039792|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	BC050762|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AF334736|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	BC010516|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1
mm9_v1_chr10_-_127930880_127930955	0.90504	AAGGUGC	BC026760|Myl6|17904|myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	NM_010860|Myl6|17904|myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	BC092214|Myl6|17904|myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	BC081470|Myl6|17904|myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	BC089485|Myl6|17904|myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	AK143885|Myl6|17904|myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	AK167106|Myl6|17904|myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	AK167859|Myl6|17904|myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	AK168869|Myl6|17904|myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	AK167191|Myl6|17904|myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	AK168450|Myl6|17904|myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
mm9_v1_chr16_+_32332294_32332380	0.887214	AAGGUGC	NM_177633|Ubxn7|224111|UBX domain protein 7	AK147730|Ubxn7|224111|UBX domain protein 7	BC062904|Ubxn7|224111|UBX domain protein 7
mm9_v1_chr12_-_92828018_92828088	0.87782	AAGGUGC	AF250834|Gtf2a1|83602|general transcription factor II A, 1	BC079909|Gtf2a1|83602|general transcription factor II A, 1	AK139996|Gtf2a1|83602|general transcription factor II A, 1	NM_031391|Gtf2a1|83602|general transcription factor II A, 1
mm9_v1_chr3_+_88489708_88489765	0.871189	AAGGUGC	NM_028814|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK170490|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK038617|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	BC006621|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK012969|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK173057|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK083018|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK164337|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK020778|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene
mm9_v1_chr4_+_147314951_147315041	0.852246	AAGGUGC	AK011059|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	AK153761|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	NM_029841|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	BC012878|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	AK173332|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene
mm9_v1_chr16_+_34785006_34785048	0.84471	AAGGUGC	AY237726|Mylk|107589|myosin, light polypeptide kinase	BC058610|Mylk|107589|myosin, light polypeptide kinase	NM_139300|Mylk|107589|myosin, light polypeptide kinase	BC145279|Mylk|107589|myosin, light polypeptide kinase	BC150749|Mylk|107589|myosin, light polypeptide kinase	BC171954|Mylk|107589|myosin, light polypeptide kinase
mm9_v1_chr7_+_17401237_17401237	0.840038	AAGGUGC	AF414080|Strn4|97387|striatin, calmodulin binding protein 4	NM_001039878|Strn4|97387|striatin, calmodulin binding protein 4	NM_133789|Strn4|97387|striatin, calmodulin binding protein 4
mm9_v1_chrX_+_102275071_102275146	0.833043	AAGGUGC	AK007655|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	AK030507|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	AK076889|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	NM_026312|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	BC035042|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	AK011610|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	BC061070|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	BC044719|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene
mm9_v1_chr5_+_139856534_139856673	0.819184	AAGGUGC	AK155280|Gpr146|80290|G protein-coupled receptor 146	AK154478|Gpr146|80290|G protein-coupled receptor 146	AK046512|Gpr146|80290|G protein-coupled receptor 146	AK089232|Gpr146|80290|G protein-coupled receptor 146	AK154708|Gpr146|80290|G protein-coupled receptor 146	AK155876|Gpr146|80290|G protein-coupled receptor 146	NM_030258|Gpr146|80290|G protein-coupled receptor 146	BC003323|Gpr146|80290|G protein-coupled receptor 146	AK050034|Gpr146|80290|G protein-coupled receptor 146	AK087100|Gpr146|80290|G protein-coupled receptor 146	AK155212|Gpr146|80290|G protein-coupled receptor 146
mm9_v1_chr16_-_44016471_44016548	0.811465	AAGGUGC	BC037472|Gramd1c|207798|GRAM domain containing 1C	AK129016|Gramd1c|207798|GRAM domain containing 1C	AK035257|Gramd1c|207798|GRAM domain containing 1C	NM_153528|Gramd1c|207798|GRAM domain containing 1C
mm9_v1_chr5_+_91503642_91503677	0.805179	AAGGUGC	NM_007950|Ereg|13874|epiregulin	D30782|Ereg|13874|epiregulin	BC027838|Ereg|13874|epiregulin
mm9_v1_chr17_-_30024821_30024837	0.77605	AAGGUGC	NM_001081160|Mdga1|74762|MAM domain containing glycosylphosphatidylinositol anchor 1
mm9_v1_chr19_+_53218486_53218486	0.76872	AAGGUGC	BC037116|Add3|27360|adducin 3 (gamma)	NM_013758|Add3|27360|adducin 3 (gamma)
mm9_v1_chr8_+_109817355_109817761	0.767157	AAGGUGC	AK045123|Nfat5|54446|nuclear factor of activated T-cells 5	AK134022|Nfat5|54446|nuclear factor of activated T-cells 5	NM_018823|Nfat5|54446|nuclear factor of activated T-cells 5	NM_133957|Nfat5|54446|nuclear factor of activated T-cells 5	AK052632|Nfat5|54446|nuclear factor of activated T-cells 5	AF162853|Nfat5|54446|nuclear factor of activated T-cells 5	AK172011|Nfat5|54446|nuclear factor of activated T-cells 5	AF369980|Nfat5|54446|nuclear factor of activated T-cells 5	AF453571|Nfat5|54446|nuclear factor of activated T-cells 5
mm9_v1_chr8_+_72315061_72315156	0.76084	AAGGUGC	BC138721|Atp13a1|170759|ATPase type 13A1	BC138722|Atp13a1|170759|ATPase type 13A1	NM_133224|Atp13a1|170759|ATPase type 13A1	AB035381|Atp13a1|170759|ATPase type 13A1	AK052057|Atp13a1|170759|ATPase type 13A1	BC078635|Atp13a1|170759|ATPase type 13A1
mm9_v1_chr1_-_45560001_45560126	0.751483	AAGGUGC	AK147328|Col5a2|12832|collagen, type V, alpha 2	NM_007737|Col5a2|12832|collagen, type V, alpha 2
mm9_v1_chr6_+_55286292_55286439	0.744665	AAGGUGC	NM_007472|Aqp1|11826|aquaporin 1	AK081886|Aqp1|11826|aquaporin 1	AK086688|Aqp1|11826|aquaporin 1	AK128905|Aqp1|11826|aquaporin 1	AK157333|Aqp1|11826|aquaporin 1	AK158226|Aqp1|11826|aquaporin 1	AK158389|Aqp1|11826|aquaporin 1	AK166280|Aqp1|11826|aquaporin 1	AK171627|Aqp1|11826|aquaporin 1	AK172361|Aqp1|11826|aquaporin 1	L02914|Aqp1|11826|aquaporin 1	BC007125|Aqp1|11826|aquaporin 1
mm9_v1_chr2_-_52601140_52601264	0.726789	AAGGUGC	AK214650|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK004604|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	NM_019667|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AB012611|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK044230|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK159699|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK017668|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK078244|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK168729|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	BC013818|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	DQ141211|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK035789|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
mm9_v1_chr3_+_14641726_14641789	0.723425	AAGGUGC	AK162621|Car13|71934|carbonic anhydrase 13	NM_024495|Car13|71934|carbonic anhydrase 13	AK153080|Car13|71934|carbonic anhydrase 13	AK153353|Car13|71934|carbonic anhydrase 13	AK010166|Car13|71934|carbonic anhydrase 13	AK150871|Car13|71934|carbonic anhydrase 13	AK150897|Car13|71934|carbonic anhydrase 13	AK151978|Car13|71934|carbonic anhydrase 13	BC064050|Car13|71934|carbonic anhydrase 13	AF231123|Car13|71934|carbonic anhydrase 13	AK152124|Car13|71934|carbonic anhydrase 13	AK153258|Car13|71934|carbonic anhydrase 13	AK151519|Car13|71934|carbonic anhydrase 13
mm9_v1_chr19_+_57435498_57435553	0.710548	AAGGUGC	NM_145505|Fam160b1|226252|family with sequence similarity 160, member B1	AK046518|Fam160b1|226252|family with sequence similarity 160, member B1	AK147386|Fam160b1|226252|family with sequence similarity 160, member B1	AK172373|Fam160b1|226252|family with sequence similarity 160, member B1	AK054539|Fam160b1|226252|family with sequence similarity 160, member B1
mm9_v1_chrX_-_16394443_16394525	0.698695	AAGGUGC	AK031833|Maob|109731|monoamine oxidase B	BC113182|Maob|109731|monoamine oxidase B	BC113788|Maob|109731|monoamine oxidase B	AK054050|Maob|109731|monoamine oxidase B	NM_172778|Maob|109731|monoamine oxidase B
mm9_v1_chr10_-_128082881_128083048	0.676067	AAGGUGC	AK089522|Ikzf4|22781|IKAROS family zinc finger 4	AK170453|Ikzf4|22781|IKAROS family zinc finger 4	NM_011772|Ikzf4|22781|IKAROS family zinc finger 4
mm9_v1_chr12_-_85534964_85534979	0.655026	AAGGUGC	AK155547|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	AK171272|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	NM_001163502|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	AK081554|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene
mm9_v1_chr10_+_87323855_87324094	0.625073	AAGGUGC	NM_001111274|Igf1|16000|insulin-like growth factor 1	NM_001111276|Igf1|16000|insulin-like growth factor 1	NM_184052|Igf1|16000|insulin-like growth factor 1	X04480|Igf1|16000|insulin-like growth factor 1	X04482|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr19_+_21346734_21346785	0.62376	AAGGUGC	AK018054|Zfand5|22682|zinc finger, AN1-type domain 5	AK076397|Zfand5|22682|zinc finger, AN1-type domain 5	BC119124|Zfand5|22682|zinc finger, AN1-type domain 5	BC119126|Zfand5|22682|zinc finger, AN1-type domain 5	NM_009551|Zfand5|22682|zinc finger, AN1-type domain 5	AK131911|Zfand5|22682|zinc finger, AN1-type domain 5	BC080270|Zfand5|22682|zinc finger, AN1-type domain 5
mm9_v1_chr10_+_68675404_68675423	0.609421	AAGGUGC	AK034826|Rhobtb1|69288|Rho-related BTB domain containing 1	NM_001081347|Rhobtb1|69288|Rho-related BTB domain containing 1	BC099973|Rhobtb1|69288|Rho-related BTB domain containing 1
mm9_v1_chr11_+_86298106_86298244	0.596701	AAGGUGC	AK036401|Rnft1|76892|ring finger protein, transmembrane 1	NM_029788|Rnft1|76892|ring finger protein, transmembrane 1	AK171077|Rnft1|76892|ring finger protein, transmembrane 1	AK153293|Rnft1|76892|ring finger protein, transmembrane 1	BC050796|Rnft1|76892|ring finger protein, transmembrane 1	AK002624|Rnft1|76892|ring finger protein, transmembrane 1
mm9_v1_chr5_+_139865857_139865857	0.59559	AAGGUGC	AK137454|Gpr146|80290|G protein-coupled receptor 146	NM_001038703|Gpr146|80290|G protein-coupled receptor 146
mm9_v1_chr5_+_130695613_130695613	0.589426	AAGGUGC	NM_001081394|0610007L01Rik|71667|RIKEN cDNA 0610007L01 gene
mm9_v1_chr18_+_53624169_53624199	0.576977	AAGGUGC	BC139295|Prdm6|225518|PR domain containing 6	AK133910|Prdm6|225518|PR domain containing 6	NM_001033281|Prdm6|225518|PR domain containing 6
mm9_v1_chr17_-_32925218_32925259	0.569737	AAGGUGC	AK029041|Zfp871|208292|zinc finger protein 871	NM_172458|Zfp871|208292|zinc finger protein 871
mm9_v1_chr14_-_32064403_32064537	0.553982	AAGGUGC	AK005852|Phf7|71838|PHD finger protein 7	NM_027949|Phf7|71838|PHD finger protein 7	AK005673|Phf7|71838|PHD finger protein 7	AK148191|Phf7|71838|PHD finger protein 7	BC049113|Phf7|71838|PHD finger protein 7
mm9_v1_chr13_-_104124527_104124573	0.546743	AAGGUGC	AK081750|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK040801|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK044801|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK090136|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK046702|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK077719|Mast4|328329|microtubule associated serine/threonine kinase family member 4	NM_175171|Mast4|328329|microtubule associated serine/threonine kinase family member 4
mm9_v1_chr18_+_9957913_9958236	0.533061	AAGGUGC	AK168619|Thoc1|225160|THO complex 1	BC024951|Thoc1|225160|THO complex 1	AK167374|Thoc1|225160|THO complex 1	AK042867|Thoc1|225160|THO complex 1	AK139307|Thoc1|225160|THO complex 1	AK013983|Thoc1|225160|THO complex 1	AK031785|Thoc1|225160|THO complex 1	AK032200|Thoc1|225160|THO complex 1	NM_153552|Thoc1|225160|THO complex 1	AK052835|Thoc1|225160|THO complex 1	AK082591|Thoc1|225160|THO complex 1
mm9_v1_chr11_+_49016828_49017024	0.532488	AAGGUGC	AK088060|Zfp62|22720|zinc finger protein 62	AK157730|Zfp62|22720|zinc finger protein 62	AK167091|Zfp62|22720|zinc finger protein 62	AK028351|Zfp62|22720|zinc finger protein 62	AK048619|Zfp62|22720|zinc finger protein 62	NM_001024846|Zfp62|22720|zinc finger protein 62	NM_009562|Zfp62|22720|zinc finger protein 62	AK154767|Zfp62|22720|zinc finger protein 62	AK079774|Zfp62|22720|zinc finger protein 62	AK165654|Zfp62|22720|zinc finger protein 62
mm9_v1_chr17_+_64287320_64287320	0.522693	AAGGUGC	M32054|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2	NM_008000|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2
mm9_v1_chr18_-_78320126_78320164	0.522462	AAGGUGC	NM_001171010|Slc14a1|108052|solute carrier family 14 (urea transporter), member 1	NM_028122|Slc14a1|108052|solute carrier family 14 (urea transporter), member 1
mm9_v1_chr18_-_78338857_78338857	0.516468	AAGGUGC	AK041979|Slc14a1|108052|solute carrier family 14 (urea transporter), member 1	NM_001171011|Slc14a1|108052|solute carrier family 14 (urea transporter), member 1
mm9_v1_chr5_+_136514365_136514365	0.512651	AAGGUGC	AK052525|Upk3b|100647|uroplakin 3B	NM_175309|Upk3b|100647|uroplakin 3B
mm9_v1_chr4_-_15940946_15941025	0.501536	AAGGUGC	AK053737|Osgin2|209212|oxidative stress induced growth inhibitor family member 2	AK169678|Osgin2|209212|oxidative stress induced growth inhibitor family member 2	AK148243|Osgin2|209212|oxidative stress induced growth inhibitor family member 2	AK048731|Osgin2|209212|oxidative stress induced growth inhibitor family member 2	NM_145950|Osgin2|209212|oxidative stress induced growth inhibitor family member 2
mm9_v1_chr18_+_32227377_32227461	0.501477	AAGGUGC	NM_173441|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK033013|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK041691|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK028247|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK163972|Iws1|73473|IWS1 homolog (S. cerevisiae)	BC068184|Iws1|73473|IWS1 homolog (S. cerevisiae)
mm9_v1_chr6_+_21899614_21899692	0.494415	AAGGUGC	NM_023626|Ing3|71777|inhibitor of growth family, member 3	AY007791|Ing3|71777|inhibitor of growth family, member 3	AK080787|Ing3|71777|inhibitor of growth family, member 3	AK131993|Ing3|71777|inhibitor of growth family, member 3	BC018342|Ing3|71777|inhibitor of growth family, member 3
mm9_v1_chr1_+_70772288_70772496	0.492046	AAGGUGC	BC094541|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	NM_177164|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	AK083856|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	BC064448|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	AK080585|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like
mm9_v1_chr8_-_48760457_48760542	0.481764	AAGGUGC	BC050003|Ing2|69260|inhibitor of growth family, member 2	BC096433|Ing2|69260|inhibitor of growth family, member 2	AK048800|Ing2|69260|inhibitor of growth family, member 2	AK083144|Ing2|69260|inhibitor of growth family, member 2	AK012716|Ing2|69260|inhibitor of growth family, member 2	NM_023503|Ing2|69260|inhibitor of growth family, member 2
mm9_v1_chr1_-_137481914_137481937	0.467186	AAGGUGC	NM_173437|Nav1|215690|neuron navigator 1
mm9_v1_chr6_+_134961629_134961652	0.459949	AAGGUGC	NM_026360|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	AK010310|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC132242|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC132244|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	AK076982|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC060168|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC095944|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
mm9_v1_chr17_+_53706283_53706299	0.457599	AAGGUGC	AK156290|Kat2b|18519|K(lysine) acetyltransferase 2B	NM_020005|Kat2b|18519|K(lysine) acetyltransferase 2B
mm9_v1_chr17_+_26852581_26852657	0.45632	AAGGUGC	AK030092|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	NM_029870|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK044760|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK020796|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132423|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132454|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene
mm9_v1_chr1_+_19198994_19199078	0.446438	AAGGUGC	AK017373|Tcfap2b|21419|transcription factor AP-2 beta	NM_009334|Tcfap2b|21419|transcription factor AP-2 beta	AK005128|Tcfap2b|21419|transcription factor AP-2 beta	AK028906|Tcfap2b|21419|transcription factor AP-2 beta	X78197|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr11_-_77421308_77421363	0.443255	AAGGUGC	AK143530|Taok1|216965|TAO kinase 1	NM_144825|Taok1|216965|TAO kinase 1
mm9_v1_chrX_-_141921588_141921636	0.442164	AAGGUGC	AF461135|Amot|27494|angiomotin	NM_153319|Amot|27494|angiomotin	BC057638|Amot|27494|angiomotin
mm9_v1_chr5_-_137548123_137548145	0.436598	AAGGUGC	BC054091|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	M33960|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	AK040662|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	NM_008871|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm9_v1_chr4_-_155366696_155366786	0.418955	AAGGUGC	AK033608|B3galt6|117592|UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	AK090344|B3galt6|117592|UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	AY050569|B3galt6|117592|UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	BC082998|B3galt6|117592|UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	BC057933|B3galt6|117592|UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	AK078083|B3galt6|117592|UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	NM_080445|B3galt6|117592|UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6
mm9_v1_chr6_+_86354212_86354404	0.416923	AAGGUGC	NM_001164078|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	NM_001164079|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	NM_011585|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	AK144222|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	AK088486|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC023813|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC046812|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC027826|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	U55862|Tia1|21841|cytotoxic granule-associated RNA binding protein 1
mm9_v1_chr5_+_73039034_73039056	0.41383	AAGGUGC	AK075654|Nipal1|70701|NIPA-like domain containing 1	NM_001081205|Nipal1|70701|NIPA-like domain containing 1
mm9_v1_chr17_-_56323312_56323363	0.413799	AAGGUGC	AY038184|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK008854|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK018016|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK133947|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK008289|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK162834|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK004074|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK148083|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	NM_080837|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	BC132127|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	BC132129|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed
mm9_v1_chr1_-_12980994_12981257	0.412977	AAGGUGC	BC117943|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	BC117944|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK048882|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK041736|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	NM_172841|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK028758|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1
mm9_v1_chr1_-_162964371_162964389	0.411048	AAGGUGC	BC113763|Zbtb37|240869|zinc finger and BTB domain containing 37	AK084871|Zbtb37|240869|zinc finger and BTB domain containing 37	NM_173424|Zbtb37|240869|zinc finger and BTB domain containing 37
mm9_v1_chr2_-_56967331_56967448	0.403864	AAGGUGC	S53744|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2	AK158607|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2	NM_013613|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2
mm9_v1_chr6_-_119988624_119988681	0.400715	AAGGUGC	AK172935|Wnk1|232341|WNK lysine deficient protein kinase 1	BC055788|Wnk1|232341|WNK lysine deficient protein kinase 1	BC046916|Wnk1|232341|WNK lysine deficient protein kinase 1	AK133738|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_001185020|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_001185021|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_198703|Wnk1|232341|WNK lysine deficient protein kinase 1
mm9_v1_chr15_+_80453912_80453951	0.4005	AAGGUGC	AF055465|Grap2|17444|GRB2-related adaptor protein 2	NM_010815|Grap2|17444|GRB2-related adaptor protein 2	AK156939|Grap2|17444|GRB2-related adaptor protein 2	AJ011735|Grap2|17444|GRB2-related adaptor protein 2	AF129477|Grap2|17444|GRB2-related adaptor protein 2	AF236118|Grap2|17444|GRB2-related adaptor protein 2
mm9_v1_chr17_+_53723450_53723450	0.38884	AAGGUGC	AK030070|Kat2b|18519|K(lysine) acetyltransferase 2B	NM_001190846|Kat2b|18519|K(lysine) acetyltransferase 2B
mm9_v1_chr17_+_64245366_64245425	0.386419	AAGGUGC	NM_001037997|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2	U76762|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2	AF286537|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2
mm9_v1_chr15_-_56526052_56526100	0.378791	AAGGUGC	U52524|Has2|15117|hyaluronan synthase 2	BC080281|Has2|15117|hyaluronan synthase 2	U69695|Has2|15117|hyaluronan synthase 2	AK045020|Has2|15117|hyaluronan synthase 2	AK079729|Has2|15117|hyaluronan synthase 2	NM_008216|Has2|15117|hyaluronan synthase 2
mm9_v1_chr11_+_51398258_51398322	0.366729	AAGGUGC	AK156866|Agxt2l2|72947|alanine-glyoxylate aminotransferase 2-like 2	NM_028398|Agxt2l2|72947|alanine-glyoxylate aminotransferase 2-like 2	AK160557|Agxt2l2|72947|alanine-glyoxylate aminotransferase 2-like 2	BC024461|Agxt2l2|72947|alanine-glyoxylate aminotransferase 2-like 2	AK013489|Agxt2l2|72947|alanine-glyoxylate aminotransferase 2-like 2	AK085984|Agxt2l2|72947|alanine-glyoxylate aminotransferase 2-like 2	AK133235|Agxt2l2|72947|alanine-glyoxylate aminotransferase 2-like 2
mm9_v1_chr17_-_66300454_66300558	0.353255	AAGGUGC	AF292033|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	AJ297390|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	BC004850|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	AK168547|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	AK033504|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	AK168633|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	AK049646|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	NM_023053|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)
mm9_v1_chr19_+_53214934_53215104	0.340528	AAGGUGC	NM_001164099|Add3|27360|adducin 3 (gamma)	NM_001164101|Add3|27360|adducin 3 (gamma)	AK019491|Add3|27360|adducin 3 (gamma)	AK028481|Add3|27360|adducin 3 (gamma)	AK083939|Add3|27360|adducin 3 (gamma)	BC029196|Add3|27360|adducin 3 (gamma)	AK035151|Add3|27360|adducin 3 (gamma)
mm9_v1_chr8_-_120195414_120195414	0.339205	AAGGUGC	AK014586|Sdr42e1|74032|short chain dehydrogenase/reductase family 42E, member 1	NM_028725|Sdr42e1|74032|short chain dehydrogenase/reductase family 42E, member 1
mm9_v1_chr19_-_42687234_42687295	0.332948	AAGGUGC	BC068307|Loxl4|67573|lysyl oxidase-like 4	AK014331|Loxl4|67573|lysyl oxidase-like 4	NM_001164311|Loxl4|67573|lysyl oxidase-like 4	NM_053083|Loxl4|67573|lysyl oxidase-like 4
mm9_v1_chr15_+_73555336_73555359	0.326884	AAGGUGC	BC066043|Ptp4a3|19245|protein tyrosine phosphatase 4a3	NM_001166388|Ptp4a3|19245|protein tyrosine phosphatase 4a3
mm9_v1_chr15_+_99869071_99869185	0.321477	AAGGUGC	NM_001159361|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	AK147562|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm9_v1_chr1_-_43155380_43155481	0.32037	AAGGUGC	BC138866|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	BC138867|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	BC072608|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	NM_001013025|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	AK051333|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1
mm9_v1_chr9_-_14185685_14185685	0.304371	AAGGUGC	AK173036|Endod1|71946|endonuclease domain containing 1	NM_028013|Endod1|71946|endonuclease domain containing 1
mm9_v1_chr18_+_62483857_62483914	0.303707	AAGGUGC	AK141625|Htr4|15562|5 hydroxytryptamine (serotonin) receptor 4	NM_008313|Htr4|15562|5 hydroxytryptamine (serotonin) receptor 4	AK141587|Htr4|15562|5 hydroxytryptamine (serotonin) receptor 4
mm9_v1_chr3_+_54559503_54559503	0.298534	AAGGUGC	AK137411|Smad9|55994|MAD homolog 9 (Drosophila)	NM_019483|Smad9|55994|MAD homolog 9 (Drosophila)
mm9_v1_chr4_+_114079291_114079328	0.29093	AAGGUGC	NM_001085549|Gm12824|666048|predicted gene 12824
mm9_v1_chr9_-_65732843_65732979	0.288783	AAGGUGC	AK078393|Trip4|56404|thyroid hormone receptor interactor 4	AK150752|Trip4|56404|thyroid hormone receptor interactor 4	BC021316|Trip4|56404|thyroid hormone receptor interactor 4	AK039024|Trip4|56404|thyroid hormone receptor interactor 4	AK146298|Trip4|56404|thyroid hormone receptor interactor 4	NM_001170907|Trip4|56404|thyroid hormone receptor interactor 4
mm9_v1_chr1_+_82583495_82583550	0.28643	AAGGUGC	AK086939|Col4a3|12828|collagen, type IV, alpha 3	NM_007734|Col4a3|12828|collagen, type IV, alpha 3	AF169387|Col4a3|12828|collagen, type IV, alpha 3
mm9_v1_chr10_+_57206184_57206291	0.283567	AAGGUGC	AK053976|Hsf2|15500|heat shock factor 2	NM_008297|Hsf2|15500|heat shock factor 2	BC018414|Hsf2|15500|heat shock factor 2	AK052270|Hsf2|15500|heat shock factor 2
mm9_v1_chr3_-_146433200_146433208	0.279792	AAGGUGC	NM_001164198|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr14_+_65977510_65977519	0.279597	AAGGUGC	AK155538|Zfp395|380912|zinc finger protein 395	NM_199029|Zfp395|380912|zinc finger protein 395
mm9_v1_chr6_+_34813131_34813171	0.267073	AAGGUGC	AK030532|Tmem140|68487|transmembrane protein 140	AK165621|Tmem140|68487|transmembrane protein 140	NM_197986|Tmem140|68487|transmembrane protein 140	BC023802|Tmem140|68487|transmembrane protein 140
mm9_v1_chr5_-_139060952_139060970	0.262711	AAGGUGC	AB024005|Zfp68|24135|zinc finger protein 68	BC018171|Zfp68|24135|zinc finger protein 68	AK013868|Zfp68|24135|zinc finger protein 68	NM_001044747|Zfp68|24135|zinc finger protein 68	NM_001163797|Zfp68|24135|zinc finger protein 68	NM_013844|Zfp68|24135|zinc finger protein 68
mm9_v1_chr1_-_33726582_33726638	0.25765	AAGGUGC	D17385|Prim2|19076|DNA primase, p58 subunit	AK153970|Prim2|19076|DNA primase, p58 subunit	BC019500|Prim2|19076|DNA primase, p58 subunit	D13545|Prim2|19076|DNA primase, p58 subunit	NM_008922|Prim2|19076|DNA primase, p58 subunit	AK076095|Prim2|19076|DNA primase, p58 subunit	AK077760|Prim2|19076|DNA primase, p58 subunit	AK168246|Prim2|19076|DNA primase, p58 subunit
mm9_v1_chr6_-_39675456_39675512	0.254346	AAGGUGC	AK140431|Braf|109880|Braf transforming gene	NM_139294|Braf|109880|Braf transforming gene
mm9_v1_chr9_+_115818572_115818572	0.253307	AAGGUGC	BC052327|Gadl1|73748|glutamate decarboxylase-like 1	NM_028638|Gadl1|73748|glutamate decarboxylase-like 1
mm9_v1_chr15_+_73553574_73553574	0.249107	AAGGUGC	NM_001166389|Ptp4a3|19245|protein tyrosine phosphatase 4a3	NM_001166390|Ptp4a3|19245|protein tyrosine phosphatase 4a3
mm9_v1_chr9_+_118387306_118387461	0.245526	AAGGUGC	NM_001164789|Eomes|13813|eomesodermin homolog (Xenopus laevis)	NM_010136|Eomes|13813|eomesodermin homolog (Xenopus laevis)	AB031037|Eomes|13813|eomesodermin homolog (Xenopus laevis)	BC094319|Eomes|13813|eomesodermin homolog (Xenopus laevis)
mm9_v1_chr13_-_93914519_93914678	0.245496	AAGGUGC	AK010195|Cmya5|76469|cardiomyopathy associated 5	AJ575748|Cmya5|76469|cardiomyopathy associated 5	NM_023821|Cmya5|76469|cardiomyopathy associated 5
mm9_v1_chr4_-_139388882_139388882	0.245285	AAGGUGC	AF254422|Pax7|18509|paired box gene 7	NM_011039|Pax7|18509|paired box gene 7
mm9_v1_chr13_+_41701584_41701584	0.243642	AAGGUGC	NM_001163572|Tmem170b|621976|transmembrane protein 170B
mm9_v1_chr2_+_91493364_91493364	0.240732	AAGGUGC	AK084622|Arhgap1|228359|Rho GTPase activating protein 1	NM_146124|Arhgap1|228359|Rho GTPase activating protein 1
mm9_v1_chr2_+_75497282_75497379	0.236766	AAGGUGC	NM_053263|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_146130|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_198090|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK133860|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK010481|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC038364|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK169663|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AB201711|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC057655|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC062198|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AF463524|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116250|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116251|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC157904|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC157919|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158038|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158074|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC172011|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC023908|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC064824|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3
mm9_v1_chr7_-_91234908_91235022	0.232822	AAGGUGC	BC116643|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	BC115873|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	AB103331|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	AK036809|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	AK162689|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	NM_030728|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene
mm9_v1_chr5_+_137443701_137443749	0.230965	AAGGUGC	AK008683|Cldn15|60363|claudin 15	NM_021719|Cldn15|60363|claudin 15	BC023428|Cldn15|60363|claudin 15
mm9_v1_chr1_+_19202046_19202134	0.227295	AAGGUGC	AK032045|Tcfap2b|21419|transcription factor AP-2 beta	NM_001025305|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr11_+_60230646_60230770	0.208107	AAGGUGC	AK017120|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	NM_025757|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AK039435|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene
mm9_v1_chr8_+_74432504_74432561	0.201173	AAGGUGC	NM_001166645|Zfp882|382019|zinc finger protein 882	AK040385|Zfp882|382019|zinc finger protein 882	BC080687|Zfp882|382019|zinc finger protein 882
mm9_v1_chr13_-_17896909_17896930	0.200023	AAGGUGC	AK173265|Cdk13|69562|cyclin-dependent kinase 13	NM_001081058|Cdk13|69562|cyclin-dependent kinase 13	NM_027118|Cdk13|69562|cyclin-dependent kinase 13
mm9_v1_chr5_+_129525943_129526053	0.198601	AAGGUGC	AK002436|Ran|19384|RAN, member RAS oncogene family	NM_009391|Ran|19384|RAN, member RAS oncogene family	S83456|Ran|19384|RAN, member RAS oncogene family
mm9_v1_chr11_+_72028639_72028830	0.188824	AAGGUGC	AK044443|4930563E22Rik|75304|RIKEN cDNA 4930563E22 gene	NM_001163728|4930563E22Rik|75304|RIKEN cDNA 4930563E22 gene	AK043242|4930563E22Rik|75304|RIKEN cDNA 4930563E22 gene	AK132388|4930563E22Rik|75304|RIKEN cDNA 4930563E22 gene	AK016202|4930563E22Rik|75304|RIKEN cDNA 4930563E22 gene
mm9_v1_chr9_+_77602582_77602622	0.188811	AAGGUGC	AK160876|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	BC019374|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	NM_010295|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	U85414|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	U85498|Gclc|14629|glutamate-cysteine ligase, catalytic subunit
mm9_v1_chr6_-_125263750_125263903	0.186159	AAGGUGC	BC138590|Ltbr|17000|lymphotoxin B receptor	BC138591|Ltbr|17000|lymphotoxin B receptor	AK146127|Ltbr|17000|lymphotoxin B receptor	L38423|Ltbr|17000|lymphotoxin B receptor	U29173|Ltbr|17000|lymphotoxin B receptor	NM_010736|Ltbr|17000|lymphotoxin B receptor
mm9_v1_chr4_-_115612507_115612530	0.184417	AAGGUGC	BC050912|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	AB037698|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	AF448118|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	AK141654|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	NM_001025567|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	NM_130865|Dmbx1|140477|diencephalon/mesencephalon homeobox 1
mm9_v1_chr1_-_55084321_55084327	0.181929	AAGGUGC	NM_031179|Sf3b1|81898|splicing factor 3b, subunit 1	AB037890|Sf3b1|81898|splicing factor 3b, subunit 1	AK165992|Sf3b1|81898|splicing factor 3b, subunit 1
mm9_v1_chr7_-_13404178_13404219	0.169509	AAGGUGC	BC139021|Zfp329|67230|zinc finger protein 329	BC139023|Zfp329|67230|zinc finger protein 329	BC072665|Zfp329|67230|zinc finger protein 329	AK013271|Zfp329|67230|zinc finger protein 329	AK014562|Zfp329|67230|zinc finger protein 329	AK051535|Zfp329|67230|zinc finger protein 329	NM_026046|Zfp329|67230|zinc finger protein 329
mm9_v1_chr1_-_59176583_59176664	0.165064	AAGGUGC	AK170118|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	AK167733|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	NM_001037812|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4
mm9_v1_chr16_+_5050149_5050235	0.163286	AAGGUGC	AK019173|Ubn1|170644|ubinuclein 1	AK147571|Ubn1|170644|ubinuclein 1	NM_026666|Ubn1|170644|ubinuclein 1	AK020146|Ubn1|170644|ubinuclein 1
mm9_v1_chr1_+_172574662_172574663	0.159565	AAGGUGC	AK042424|Olfml2b|320078|olfactomedin-like 2B	NM_177068|Olfml2b|320078|olfactomedin-like 2B
mm9_v1_chrX_+_70587906_70588053	0.1561	AAGGUGC	NM_031494|Zfp275|27081|zinc finger protein 275	AK142957|Zfp275|27081|zinc finger protein 275	NM_001160229|Zfp275|27081|zinc finger protein 275	BC138002|Zfp275|27081|zinc finger protein 275	BC138003|Zfp275|27081|zinc finger protein 275
mm9_v1_chr5_+_33721199_33721420	0.145265	AAGGUGC	AK028507|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	AK040506|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	NM_001081101|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	AK156117|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	BC137803|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	BC144920|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene
mm9_v1_chr16_+_17233664_17233756	0.134041	AAGGUGC	AK157276|Hic2|58180|hypermethylated in cancer 2	AK156332|Hic2|58180|hypermethylated in cancer 2	NM_178922|Hic2|58180|hypermethylated in cancer 2	BC065124|Hic2|58180|hypermethylated in cancer 2	AK129266|Hic2|58180|hypermethylated in cancer 2	AK084975|Hic2|58180|hypermethylated in cancer 2
mm9_v1_chr15_+_99984826_99984839	0.127894	AAGGUGC	AK030064|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	NM_172819|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	BC137857|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	BC137858|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm9_v1_chr6_+_139789965_139790178	0.127707	AAGGUGC	AB008792|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	NM_011084|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	AK054415|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	AK054271|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	AK054266|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	BC061142|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide
mm9_v1_chr15_+_43308745_43308829	0.11305	AAGGUGC	AK014989|Ttc35|66736|tetratricopeptide repeat domain 35	NM_025736|Ttc35|66736|tetratricopeptide repeat domain 35	AK015968|Ttc35|66736|tetratricopeptide repeat domain 35	BC004716|Ttc35|66736|tetratricopeptide repeat domain 35	AK172887|Ttc35|66736|tetratricopeptide repeat domain 35
mm9_v1_chr12_+_74224693_74224793	0.106423	AAGGUGC	AK048499|Mnat1|17420|menage a trois 1	AK155859|Mnat1|17420|menage a trois 1	NM_008612|Mnat1|17420|menage a trois 1	AK008249|Mnat1|17420|menage a trois 1	BC089023|Mnat1|17420|menage a trois 1	BC115630|Mnat1|17420|menage a trois 1	BC115631|Mnat1|17420|menage a trois 1	AK157721|Mnat1|17420|menage a trois 1	AK008134|Mnat1|17420|menage a trois 1	AK053621|Mnat1|17420|menage a trois 1	AK011833|Mnat1|17420|menage a trois 1	AK029174|Mnat1|17420|menage a trois 1
mm9_v1_chr2_-_56976413_56976478	0.104471	AAGGUGC	NM_001139509|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2
mm9_v1_chr5_+_77403725_77403746	0.103715	AAGGUGC	AK133784|Srp72|66661|signal recognition particle 72	NM_025691|Srp72|66661|signal recognition particle 72	BC003434|Srp72|66661|signal recognition particle 72	AK138875|Srp72|66661|signal recognition particle 72	BC019196|Srp72|66661|signal recognition particle 72
mm9_v1_chr9_-_56265833_56265857	0.102897	AAGGUGC	AK035440|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene	AK048912|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene	NM_172924|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene
mm9_v1_chr5_+_137960107_137960139	0.100662	AAGGUGC	AY176042|Gigyf1|57330|GRB10 interacting GYF protein 1	NM_031408|Gigyf1|57330|GRB10 interacting GYF protein 1	BC052875|Gigyf1|57330|GRB10 interacting GYF protein 1
mm9_v1_chr19_-_5388655_5388722	0.0974674	AAGGUGC	AB014721|Sart1|20227|squamous cell carcinoma antigen recognized by T-cells 1	AK088341|Sart1|20227|squamous cell carcinoma antigen recognized by T-cells 1	BC028823|Sart1|20227|squamous cell carcinoma antigen recognized by T-cells 1	BC051394|Sart1|20227|squamous cell carcinoma antigen recognized by T-cells 1	AF129931|Sart1|20227|squamous cell carcinoma antigen recognized by T-cells 1	NM_016882|Sart1|20227|squamous cell carcinoma antigen recognized by T-cells 1
mm9_v1_chr6_-_87540694_87540714	0.0943497	AAGGUGC	BC059003|Prokr1|58182|prokineticin receptor 1	NM_021381|Prokr1|58182|prokineticin receptor 1	AK134279|Prokr1|58182|prokineticin receptor 1
mm9_v1_chr18_+_20716598_20716640	0.0915868	AAGGUGC	NM_007883|Dsg2|13511|desmoglein 2	BC131653|Dsg2|13511|desmoglein 2	BC131654|Dsg2|13511|desmoglein 2
mm9_v1_chr7_+_107307748_107307807	0.0905531	AAGGUGC	AK011925|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	BC115472|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	NM_026010|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	BC115473|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	AK008917|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	AK013127|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)
mm9_v1_chr15_-_83555335_83555492	0.0810687	AAGGUGC	AF276425|Scube1|64706|signal peptide, CUB domain, EGF-like 1	BC066066|Scube1|64706|signal peptide, CUB domain, EGF-like 1	BC080278|Scube1|64706|signal peptide, CUB domain, EGF-like 1	AK041590|Scube1|64706|signal peptide, CUB domain, EGF-like 1	NM_022723|Scube1|64706|signal peptide, CUB domain, EGF-like 1
mm9_v1_chr3_-_123088789_123088909	0.0757718	AAGGUGC	AK083169|Mettl14|210529|methyltransferase like 14	AK089949|Mettl14|210529|methyltransferase like 14	AK129409|Mettl14|210529|methyltransferase like 14	BC052204|Mettl14|210529|methyltransferase like 14	AK136652|Mettl14|210529|methyltransferase like 14	AK146881|Mettl14|210529|methyltransferase like 14	AK153810|Mettl14|210529|methyltransferase like 14	NM_201638|Mettl14|210529|methyltransferase like 14
mm9_v1_chr8_+_91045232_91045286	0.0750996	AAGGUGC	AK166564|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	NM_027280|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AK076164|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AK082367|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	BC034838|Nkd1|93960|naked cuticle 1 homolog (Drosophila)
mm9_v1_chr5_-_68238654_68238670	0.0716926	AAGGUGC	DQ503480|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK151709|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503479|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_001038999|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_009727|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503477|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr15_+_8059306_8059370	0.0716152	AAGGUGC	NM_133227|Nup155|170762|nucleoporin 155	AK044109|Nup155|170762|nucleoporin 155	AF322375|Nup155|170762|nucleoporin 155	AK045334|Nup155|170762|nucleoporin 155	AK145717|Nup155|170762|nucleoporin 155	AK086426|Nup155|170762|nucleoporin 155	AK036575|Nup155|170762|nucleoporin 155	AK129217|Nup155|170762|nucleoporin 155	BC050919|Nup155|170762|nucleoporin 155
mm9_v1_chr8_+_91051531_91051531	0.0677782	AAGGUGC	NM_001163660|Nkd1|93960|naked cuticle 1 homolog (Drosophila)
mm9_v1_chr7_+_132588189_132588205	0.0475264	AAGGUGC	AK014006|Jmjd5|77035|jumonji domain containing 5	NM_029842|Jmjd5|77035|jumonji domain containing 5	BC024807|Jmjd5|77035|jumonji domain containing 5
mm9_v1_chr18_-_46901117_46901234	0.0464118	AAGGUGC	BC070470|Atg12|67526|autophagy-related 12 (yeast)	AB066216|Atg12|67526|autophagy-related 12 (yeast)	AK167027|Atg12|67526|autophagy-related 12 (yeast)	AK008698|Atg12|67526|autophagy-related 12 (yeast)	AK016474|Atg12|67526|autophagy-related 12 (yeast)	AK039278|Atg12|67526|autophagy-related 12 (yeast)	AK039546|Atg12|67526|autophagy-related 12 (yeast)	AK005405|Atg12|67526|autophagy-related 12 (yeast)	NM_026217|Atg12|67526|autophagy-related 12 (yeast)
mm9_v1_chr18_-_14841294_14841422	0.045711	AAGGUGC	AK083887|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_001161369|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_001161370|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_001161371|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_009280|Ss18|268996|synovial sarcoma translocation, Chromosome 18	X93357|Ss18|268996|synovial sarcoma translocation, Chromosome 18
mm9_v1_chr5_+_98683202_98683430	0.0417113	AAGGUGC	AK028894|Fgf5|14176|fibroblast growth factor 5	NM_010203|Fgf5|14176|fibroblast growth factor 5	BC071227|Fgf5|14176|fibroblast growth factor 5	AK028694|Fgf5|14176|fibroblast growth factor 5	AB016516|Fgf5|14176|fibroblast growth factor 5	M30643|Fgf5|14176|fibroblast growth factor 5
mm9_v1_chr11_-_106474237_106474312	0.0365715	AAGGUGC	AK129434|Tex2|21763|testis expressed gene 2	NM_198292|Tex2|21763|testis expressed gene 2	AK168397|Tex2|21763|testis expressed gene 2
mm9_v1_chr6_-_121423682_121423717	0.036393	AAGGUGC	AK122446|Iqsec3|243621|IQ motif and Sec7 domain 3	AK147268|Iqsec3|243621|IQ motif and Sec7 domain 3	AK169437|Iqsec3|243621|IQ motif and Sec7 domain 3	NM_001033354|Iqsec3|243621|IQ motif and Sec7 domain 3
mm9_v1_chr19_-_60866516_60866617	0.0315823	AAGGUGC	AK172899|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	U14172|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK149482|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK161634|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK145629|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK082006|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK087340|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK167010|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK043609|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	NM_010123|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK145132|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A
mm9_v1_chr6_+_121133684_121133684	0.0311985	AAGGUGC	AK087637|Pex26|74043|peroxisomal biogenesis factor 26	NM_028730|Pex26|74043|peroxisomal biogenesis factor 26
mm9_v1_chr12_-_92828896_92828926	0.026219	AAGGUGC	BC117829|Gtf2a1|83602|general transcription factor II A, 1	BC117830|Gtf2a1|83602|general transcription factor II A, 1	AK048711|Gtf2a1|83602|general transcription factor II A, 1	NM_175335|Gtf2a1|83602|general transcription factor II A, 1
mm9_v1_chr1_-_163806710_163806814	0.0258856	AAGGUGC	BC138379|AI848100|226551|expressed sequence AI848100	AK171856|AI848100|226551|expressed sequence AI848100	NM_172645|AI848100|226551|expressed sequence AI848100
mm9_v1_chr4_+_124479785_124479853	0.0257408	AAGGUGC	AK150295|Mtf1|17764|metal response element binding transcription factor 1	NM_008636|Mtf1|17764|metal response element binding transcription factor 1	AK030284|Mtf1|17764|metal response element binding transcription factor 1	AK012676|Mtf1|17764|metal response element binding transcription factor 1	X71327|Mtf1|17764|metal response element binding transcription factor 1	BC017679|Mtf1|17764|metal response element binding transcription factor 1
mm9_v1_chr12_+_36883692_36883781	0.0209707	AAGGUGC	NM_146033|Ankmy2|217473|ankyrin repeat and MYND domain containing 2	AK077556|Ankmy2|217473|ankyrin repeat and MYND domain containing 2	BC012275|Ankmy2|217473|ankyrin repeat and MYND domain containing 2	BC024959|Ankmy2|217473|ankyrin repeat and MYND domain containing 2
mm9_v1_chr4_-_134989653_134989790	0.0207872	AAGGUGC	AK042201|Rcan3|53902|regulator of calcineurin 3	AK155270|Rcan3|53902|regulator of calcineurin 3	NM_022980|Rcan3|53902|regulator of calcineurin 3	AK043916|Rcan3|53902|regulator of calcineurin 3
mm9_v1_chr11_-_95926589_95926740	0.016547	AAGGUGC	AK077793|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	AK149770|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	NM_172300|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)
mm9_v1_chr1_-_59176902_59176978	0.0118708	AAGGUGC	BC147243|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	BC147244|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	AK161697|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	NM_001033449|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4
mm9_v1_chr9_-_21918612_21918612	0.00363095	AAGGUGC	BC056225|Elof1|66126|elongation factor 1 homolog (ELF1, S. cerevisiae)	NM_170777|Elof1|66126|elongation factor 1 homolog (ELF1, S. cerevisiae)
