mm9_v1_chr16_+_34785006_34785048	11.4494	AAUGCCC	AY237726|Mylk|107589|myosin, light polypeptide kinase	BC058610|Mylk|107589|myosin, light polypeptide kinase	NM_139300|Mylk|107589|myosin, light polypeptide kinase	BC145279|Mylk|107589|myosin, light polypeptide kinase	BC150749|Mylk|107589|myosin, light polypeptide kinase	BC171954|Mylk|107589|myosin, light polypeptide kinase
mm9_v1_chr10_+_21714471_21714488	9.09412	AAUGCCC	NM_011361|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK086892|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK146037|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK159131|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr10_+_21601968_21601989	8.59051	AAUGCCC	BC070401|Sgk1|20393|serum/glucocorticoid regulated kinase 1	NM_001161845|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr10_+_21705909_21705909	8.25059	AAUGCCC	NM_001161848|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr10_+_21712008_21712034	8.03954	AAUGCCC	NM_001161849|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr10_+_21698470_21698479	7.99599	AAUGCCC	NM_001161847|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr2_-_103143352_103143356	7.74096	AAUGCCC	NM_007914|Ehf|13661|ets homologous factor
mm9_v1_chr10_+_21713669_21713695	7.7317	AAUGCCC	NM_001161850|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr11_+_98308147_98308152	6.15582	AAUGCCC	NM_010346|Grb7|14786|growth factor receptor bound protein 7	AK057640|Grb7|14786|growth factor receptor bound protein 7
mm9_v1_chr1_-_107253245_107253286	5.43802	AAUGCCC	AK044638|Rnf152|320311|ring finger protein 152	NM_001160368|Rnf152|320311|ring finger protein 152	NM_178779|Rnf152|320311|ring finger protein 152
mm9_v1_chr4_-_82151180_82151288	5.32843	AAUGCCC	AK034793|Nfib|18028|nuclear factor I/B	Y07686|Nfib|18028|nuclear factor I/B	AK146480|Nfib|18028|nuclear factor I/B	NM_001113209|Nfib|18028|nuclear factor I/B	NM_001113210|Nfib|18028|nuclear factor I/B	NM_008687|Nfib|18028|nuclear factor I/B	AK034261|Nfib|18028|nuclear factor I/B	AK087480|Nfib|18028|nuclear factor I/B	AK084941|Nfib|18028|nuclear factor I/B
mm9_v1_chr10_+_88348725_88348907	5.10929	AAUGCCC	AK136457|Slc5a8|216225|solute carrier family 5 (iodide transporter), member 8	AY484428|Slc5a8|216225|solute carrier family 5 (iodide transporter), member 8	NM_145423|Slc5a8|216225|solute carrier family 5 (iodide transporter), member 8	BC017691|Slc5a8|216225|solute carrier family 5 (iodide transporter), member 8	AK039927|Slc5a8|216225|solute carrier family 5 (iodide transporter), member 8
mm9_v1_chr17_+_87153083_87153241	4.86665	AAUGCCC	AK136911|Epas1|13819|endothelial PAS domain protein 1	NM_010137|Epas1|13819|endothelial PAS domain protein 1	D89787|Epas1|13819|endothelial PAS domain protein 1
mm9_v1_chr11_+_28753190_28753243	4.83266	AAUGCCC	AK077302|Efemp1|216616|epidermal growth factor-containing fibulin-like extracellular matrix protein 1	NM_146015|Efemp1|216616|epidermal growth factor-containing fibulin-like extracellular matrix protein 1	AY251056|Efemp1|216616|epidermal growth factor-containing fibulin-like extracellular matrix protein 1
mm9_v1_chr10_+_87321789_87322010	4.33556	AAUGCCC	NM_001111275|Igf1|16000|insulin-like growth factor 1	NM_010512|Igf1|16000|insulin-like growth factor 1	AK050118|Igf1|16000|insulin-like growth factor 1	AK081019|Igf1|16000|insulin-like growth factor 1	AK165471|Igf1|16000|insulin-like growth factor 1	AY878192|Igf1|16000|insulin-like growth factor 1	AY878193|Igf1|16000|insulin-like growth factor 1	AK052033|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr19_+_6306456_6306644	4.26639	AAUGCCC	NM_001033342|Cdc42bpg|240505|CDC42 binding protein kinase gamma (DMPK-like)
mm9_v1_chr5_-_66489416_66489417	3.95629	AAUGCCC	NM_139065|Rbm47|245945|RNA binding motif protein 47	BC013481|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr13_+_81022644_81022695	3.65452	AAUGCCC	AK088288|Arrdc3|105171|arrestin domain containing 3	AK084951|Arrdc3|105171|arrestin domain containing 3	BC054844|Arrdc3|105171|arrestin domain containing 3	NM_001042591|Arrdc3|105171|arrestin domain containing 3	BC044762|Arrdc3|105171|arrestin domain containing 3	BC098474|Arrdc3|105171|arrestin domain containing 3	AK122499|Arrdc3|105171|arrestin domain containing 3
mm9_v1_chr10_+_85763156_85763226	3.59065	AAUGCCC	NM_011595|Timp3|21859|tissue inhibitor of metalloproteinase 3
mm9_v1_chr8_-_118230771_118230819	3.58375	AAUGCCC	AK132165|Maf|17132|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog	NM_001025577|Maf|17132|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
mm9_v1_chr8_+_74659107_74659219	3.44643	AAUGCCC	AK049383|Tpm4|326618|tropomyosin 4	BC070421|Tpm4|326618|tropomyosin 4	NM_001001491|Tpm4|326618|tropomyosin 4	BC023701|Tpm4|326618|tropomyosin 4	BC032174|Tpm4|326618|tropomyosin 4	BC032175|Tpm4|326618|tropomyosin 4	BC023827|Tpm4|326618|tropomyosin 4
mm9_v1_chr5_-_66543123_66543228	3.44473	AAUGCCC	AK170082|Rbm47|245945|RNA binding motif protein 47	NM_001127382|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr15_-_98438063_98438063	3.42419	AAUGCCC	AK147516|Adcy6|11512|adenylate cyclase 6	NM_007405|Adcy6|11512|adenylate cyclase 6
mm9_v1_chr5_-_66542161_66542216	3.20182	AAUGCCC	AK035620|Rbm47|245945|RNA binding motif protein 47	AK142584|Rbm47|245945|RNA binding motif protein 47	AK085733|Rbm47|245945|RNA binding motif protein 47	NM_178446|Rbm47|245945|RNA binding motif protein 47	BC112902|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr9_-_71440061_71440201	3.19321	AAUGCCC	AK132167|Gcom1|102371|GRINL1A complex locus	AK146889|Gcom1|102371|GRINL1A complex locus	BC139077|Gcom1|102371|GRINL1A complex locus	BC139078|Gcom1|102371|GRINL1A complex locus	NM_001033208|Gcom1|102371|GRINL1A complex locus
mm9_v1_chr10_+_87323855_87324094	3.01051	AAUGCCC	NM_001111274|Igf1|16000|insulin-like growth factor 1	NM_001111276|Igf1|16000|insulin-like growth factor 1	NM_184052|Igf1|16000|insulin-like growth factor 1	X04480|Igf1|16000|insulin-like growth factor 1	X04482|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr3_+_90330770_90330799	2.85046	AAUGCCC	NM_001163525|S100a14|66166|S100 calcium binding protein A14	NM_001163526|S100a14|66166|S100 calcium binding protein A14	NM_025393|S100a14|66166|S100 calcium binding protein A14	AK003669|S100a14|66166|S100 calcium binding protein A14	AK132637|S100a14|66166|S100 calcium binding protein A14	AK019075|S100a14|66166|S100 calcium binding protein A14
mm9_v1_chr10_-_44178474_44178587	2.73399	AAUGCCC	AK133503|Prdm1|12142|PR domain containing 1, with ZNF domain	BC129801|Prdm1|12142|PR domain containing 1, with ZNF domain	NM_007548|Prdm1|12142|PR domain containing 1, with ZNF domain	U08185|Prdm1|12142|PR domain containing 1, with ZNF domain
mm9_v1_chr19_-_6996189_6996331	2.56425	AAUGCCC	BC034165|Esrra|26379|estrogen related receptor, alpha	BC138586|Esrra|26379|estrogen related receptor, alpha	BC171958|Esrra|26379|estrogen related receptor, alpha	U85259|Esrra|26379|estrogen related receptor, alpha	AK019222|Esrra|26379|estrogen related receptor, alpha	AK046588|Esrra|26379|estrogen related receptor, alpha	AK156371|Esrra|26379|estrogen related receptor, alpha	NM_007953|Esrra|26379|estrogen related receptor, alpha	BC039774|Esrra|26379|estrogen related receptor, alpha
mm9_v1_chr9_+_122026378_122026421	2.54047	AAUGCCC	NM_001164572|Snrk|20623|SNF related kinase	NM_133741|Snrk|20623|SNF related kinase
mm9_v1_chr7_-_125635435_125635488	2.52369	AAUGCCC	AK134593|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2	AK137678|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2	NM_001033380|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm9_v1_chr8_+_106864488_106864703	2.50828	AAUGCCC	AY241870|Cmtm3|68119|CKLF-like MARVEL transmembrane domain containing 3	NM_024217|Cmtm3|68119|CKLF-like MARVEL transmembrane domain containing 3	AK079165|Cmtm3|68119|CKLF-like MARVEL transmembrane domain containing 3	BC003230|Cmtm3|68119|CKLF-like MARVEL transmembrane domain containing 3	AK172091|Cmtm3|68119|CKLF-like MARVEL transmembrane domain containing 3	BC145817|Cmtm3|68119|CKLF-like MARVEL transmembrane domain containing 3	BC145819|Cmtm3|68119|CKLF-like MARVEL transmembrane domain containing 3	AK003882|Cmtm3|68119|CKLF-like MARVEL transmembrane domain containing 3
mm9_v1_chr3_-_57379831_57379833	2.50807	AAUGCCC	AK142299|Wwtr1|97064|WW domain containing transcription regulator 1	NM_001168281|Wwtr1|97064|WW domain containing transcription regulator 1
mm9_v1_chr10_+_98570768_98570804	2.37455	AAUGCCC	NM_015737|Galnt4|14426|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	AK153253|Galnt4|14426|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	BC057882|Galnt4|14426|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	AK148036|Galnt4|14426|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	AK033494|Galnt4|14426|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4
mm9_v1_chr7_-_77505248_77505478	2.37331	AAUGCCC	X76653|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	U07635|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	AK140125|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	BC042484|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	NM_009697|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2
mm9_v1_chr1_-_13579885_13579986	2.36234	AAUGCCC	AK168708|Tram1|72265|translocating chain-associating membrane protein 1	AK151240|Tram1|72265|translocating chain-associating membrane protein 1	AK152343|Tram1|72265|translocating chain-associating membrane protein 1	AK152991|Tram1|72265|translocating chain-associating membrane protein 1	AK150777|Tram1|72265|translocating chain-associating membrane protein 1	BC012401|Tram1|72265|translocating chain-associating membrane protein 1	AK145291|Tram1|72265|translocating chain-associating membrane protein 1	AK146207|Tram1|72265|translocating chain-associating membrane protein 1	AK088814|Tram1|72265|translocating chain-associating membrane protein 1	AK142658|Tram1|72265|translocating chain-associating membrane protein 1	AK155905|Tram1|72265|translocating chain-associating membrane protein 1	AK159203|Tram1|72265|translocating chain-associating membrane protein 1	AK159350|Tram1|72265|translocating chain-associating membrane protein 1	NM_028173|Tram1|72265|translocating chain-associating membrane protein 1	AK150551|Tram1|72265|translocating chain-associating membrane protein 1	AK151409|Tram1|72265|translocating chain-associating membrane protein 1	AK151664|Tram1|72265|translocating chain-associating membrane protein 1	AK152338|Tram1|72265|translocating chain-associating membrane protein 1	AK153379|Tram1|72265|translocating chain-associating membrane protein 1	AK028304|Tram1|72265|translocating chain-associating membrane protein 1	AK159878|Tram1|72265|translocating chain-associating membrane protein 1
mm9_v1_chr11_+_98902556_98902703	2.28892	AAUGCCC	AK031212|Igfbp4|16010|insulin-like growth factor binding protein 4	AK150229|Igfbp4|16010|insulin-like growth factor binding protein 4	AK165688|Igfbp4|16010|insulin-like growth factor binding protein 4	NM_010517|Igfbp4|16010|insulin-like growth factor binding protein 4	BC019836|Igfbp4|16010|insulin-like growth factor binding protein 4	X81582|Igfbp4|16010|insulin-like growth factor binding protein 4
mm9_v1_chr1_-_135975681_135975731	2.28355	AAUGCCC	BC132259|Btg2|12227|B-cell translocation gene 2, anti-proliferative	BC138639|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK088976|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169436|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK133796|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169269|Btg2|12227|B-cell translocation gene 2, anti-proliferative	NM_007570|Btg2|12227|B-cell translocation gene 2, anti-proliferative
mm9_v1_chr19_+_38598686_38598698	2.28057	AAUGCCC	AB076247|Plce1|74055|phospholipase C, epsilon 1	NM_019588|Plce1|74055|phospholipase C, epsilon 1	BC138349|Plce1|74055|phospholipase C, epsilon 1	BC138350|Plce1|74055|phospholipase C, epsilon 1	BC145246|Plce1|74055|phospholipase C, epsilon 1
mm9_v1_chr19_+_53403902_53404133	2.26566	AAUGCCC	NM_010847|Mxi1|17859|Max interacting protein 1	AK144219|Mxi1|17859|Max interacting protein 1	AK017637|Mxi1|17859|Max interacting protein 1	AK140465|Mxi1|17859|Max interacting protein 1	L38822|Mxi1|17859|Max interacting protein 1	U24674|Mxi1|17859|Max interacting protein 1
mm9_v1_chr3_-_57379600_57379797	2.25881	AAUGCCC	AK213529|Wwtr1|97064|WW domain containing transcription regulator 1	BC004640|Wwtr1|97064|WW domain containing transcription regulator 1	AK142720|Wwtr1|97064|WW domain containing transcription regulator 1	AK009983|Wwtr1|97064|WW domain containing transcription regulator 1	AJ299430|Wwtr1|97064|WW domain containing transcription regulator 1	BC014727|Wwtr1|97064|WW domain containing transcription regulator 1	AK011504|Wwtr1|97064|WW domain containing transcription regulator 1	NM_133784|Wwtr1|97064|WW domain containing transcription regulator 1
mm9_v1_chr19_-_47538898_47538933	2.22903	AAUGCCC	AJ007012|Sh3pxd2a|14218|SH3 and PX domains 2A	NM_001164717|Sh3pxd2a|14218|SH3 and PX domains 2A	NM_008018|Sh3pxd2a|14218|SH3 and PX domains 2A
mm9_v1_chr11_+_117670970_117671053	2.14601	AAUGCCC	NM_009304|Syngr2|20973|synaptogyrin 2	AK150234|Syngr2|20973|synaptogyrin 2	AK170681|Syngr2|20973|synaptogyrin 2	AF151985|Syngr2|20973|synaptogyrin 2	BC004829|Syngr2|20973|synaptogyrin 2	AF364049|Syngr2|20973|synaptogyrin 2	AK157343|Syngr2|20973|synaptogyrin 2	AJ002307|Syngr2|20973|synaptogyrin 2
mm9_v1_chr15_+_102236709_102236810	2.02751	AAUGCCC	EF200005|Sp1|20683|trans-acting transcription factor 1	NM_013672|Sp1|20683|trans-acting transcription factor 1	AF022363|Sp1|20683|trans-acting transcription factor 1	S79832|Sp1|20683|trans-acting transcription factor 1	AF062566|Sp1|20683|trans-acting transcription factor 1
mm9_v1_chr2_-_12223518_12223578	2.01301	AAUGCCC	BC137793|Itga8|241226|integrin alpha 8	AK135193|Itga8|241226|integrin alpha 8	AK044910|Itga8|241226|integrin alpha 8	NM_001001309|Itga8|241226|integrin alpha 8
mm9_v1_chr3_-_27609279_27609407	1.97439	AAUGCCC	AB098596|Fndc3b|72007|fibronectin type III domain containing 3B	AK147346|Fndc3b|72007|fibronectin type III domain containing 3B	AK220297|Fndc3b|72007|fibronectin type III domain containing 3B	NM_173182|Fndc3b|72007|fibronectin type III domain containing 3B	BC067389|Fndc3b|72007|fibronectin type III domain containing 3B
mm9_v1_chr7_-_77511607_77511666	1.91149	AAUGCCC	BC094360|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	NM_183261|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2
mm9_v1_chr7_+_117771170_117771184	1.90447	AAUGCCC	AK144181|Adm|11535|adrenomedullin	AK144649|Adm|11535|adrenomedullin	AK144600|Adm|11535|adrenomedullin	AK171066|Adm|11535|adrenomedullin	NM_009627|Adm|11535|adrenomedullin	U77630|Adm|11535|adrenomedullin	BC052665|Adm|11535|adrenomedullin
mm9_v1_chr2_-_58419236_58419238	1.88011	AAUGCCC	AK150014|Acvr1|11477|activin A receptor, type 1	AK150075|Acvr1|11477|activin A receptor, type 1	NM_001110204|Acvr1|11477|activin A receptor, type 1	NM_001110205|Acvr1|11477|activin A receptor, type 1	NM_007394|Acvr1|11477|activin A receptor, type 1
mm9_v1_chr1_+_9788206_9788302	1.85054	AAUGCCC	NM_133220|Sgk3|170755|serum/glucocorticoid regulated kinase 3	NM_177547|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK143836|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK031133|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151793|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171120|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171186|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151867|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171678|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK172323|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK028722|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK039247|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK039427|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151181|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK166414|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151996|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AF312007|Sgk3|170755|serum/glucocorticoid regulated kinase 3
mm9_v1_chr19_-_57083064_57083064	1.8476	AAUGCCC	NM_001177796|Afap1l2|226250|actin filament associated protein 1-like 2	NM_001177797|Afap1l2|226250|actin filament associated protein 1-like 2	NM_146102|Afap1l2|226250|actin filament associated protein 1-like 2
mm9_v1_chr9_+_108594470_108594519	1.83219	AAUGCCC	AF533977|Prkar2a|19087|protein kinase, cAMP dependent regulatory, type II alpha	NM_008924|Prkar2a|19087|protein kinase, cAMP dependent regulatory, type II alpha	BC080276|Prkar2a|19087|protein kinase, cAMP dependent regulatory, type II alpha	BC075623|Prkar2a|19087|protein kinase, cAMP dependent regulatory, type II alpha
mm9_v1_chr4_-_154596628_154596643	1.80463	AAUGCCC	AF435852|Ski|20481|ski sarcoma viral oncogene homolog (avian)	BC068305|Ski|20481|ski sarcoma viral oncogene homolog (avian)	NM_011385|Ski|20481|ski sarcoma viral oncogene homolog (avian)
mm9_v1_chr13_+_47289371_47289389	1.78943	AAUGCCC	AK052846|Rnf144b|218215|ring finger protein 144B	NM_001170643|Rnf144b|218215|ring finger protein 144B	AK040939|Rnf144b|218215|ring finger protein 144B	BC025007|Rnf144b|218215|ring finger protein 144B
mm9_v1_chr19_+_53384990_53385011	1.75108	AAUGCCC	NM_001008542|Mxi1|17859|Max interacting protein 1	AK154538|Mxi1|17859|Max interacting protein 1	BC064453|Mxi1|17859|Max interacting protein 1
mm9_v1_chr19_+_53404935_53404935	1.69075	AAUGCCC	L38821|Mxi1|17859|Max interacting protein 1	NM_001008543|Mxi1|17859|Max interacting protein 1
mm9_v1_chr17_-_27957398_27957565	1.68448	AAUGCCC	AK143016|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	AK165011|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	AK161603|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC132324|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC132326|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC137573|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC137576|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC145403|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	NM_001033279|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	NM_001044719|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed
mm9_v1_chr4_+_135728188_135728308	1.67807	AAUGCCC	AK087452|E2f2|242705|E2F transcription factor 2	NM_177733|E2f2|242705|E2F transcription factor 2
mm9_v1_chr10_+_11001384_11001384	1.66374	AAUGCCC	AK006369|Fbxo30|71865|F-box protein 30	NM_001168297|Fbxo30|71865|F-box protein 30
mm9_v1_chr2_-_77118632_77118710	1.63978	AAUGCCC	BC013245|Sestd1|228071|SEC14 and spectrin domains 1	AK047939|Sestd1|228071|SEC14 and spectrin domains 1	BC044853|Sestd1|228071|SEC14 and spectrin domains 1	NM_175465|Sestd1|228071|SEC14 and spectrin domains 1
mm9_v1_chr9_+_108855789_108855789	1.62878	AAUGCCC	NM_007738|Col7a1|12836|collagen, type VII, alpha 1	U32107|Col7a1|12836|collagen, type VII, alpha 1
mm9_v1_chr13_-_34437042_34437162	1.58778	AAUGCCC	AK147397|Slc22a23|73102|solute carrier family 22, member 23	NM_001033167|Slc22a23|73102|solute carrier family 22, member 23
mm9_v1_chr11_+_87861165_87861225	1.58586	AAUGCCC	AK150535|Srsf1|110809|serine/arginine-rich splicing factor 1	NM_001078167|Srsf1|110809|serine/arginine-rich splicing factor 1	NM_173374|Srsf1|110809|serine/arginine-rich splicing factor 1	AK053674|Srsf1|110809|serine/arginine-rich splicing factor 1	AK018176|Srsf1|110809|serine/arginine-rich splicing factor 1	BC058627|Srsf1|110809|serine/arginine-rich splicing factor 1	AK078715|Srsf1|110809|serine/arginine-rich splicing factor 1	AK169203|Srsf1|110809|serine/arginine-rich splicing factor 1	AK169623|Srsf1|110809|serine/arginine-rich splicing factor 1	AK190745|Srsf1|110809|serine/arginine-rich splicing factor 1
mm9_v1_chr4_-_19636000_19636212	1.56058	AAUGCCC	AK137588|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1	BC026829|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1	AK168567|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1	AK032232|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1	AK042432|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1	NM_177327|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1
mm9_v1_chr10_+_11001072_11001225	1.54916	AAUGCCC	NM_027968|Fbxo30|71865|F-box protein 30	AK083479|Fbxo30|71865|F-box protein 30	AK135274|Fbxo30|71865|F-box protein 30
mm9_v1_chr7_-_123182257_123182257	1.51958	AAUGCCC	AK048143|Sox6|20679|SRY-box containing gene 6	NM_001025559|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr9_+_70526702_70526924	1.48456	AAUGCCC	BC066207|Adam10|11487|a disintegrin and metallopeptidase domain 10	NM_007399|Adam10|11487|a disintegrin and metallopeptidase domain 10	BC057346|Adam10|11487|a disintegrin and metallopeptidase domain 10
mm9_v1_chr17_+_88840048_88840164	1.43837	AAUGCCC	NM_180974|Foxn2|14236|forkhead box N2	AK154401|Foxn2|14236|forkhead box N2	AK030735|Foxn2|14236|forkhead box N2	AK031639|Foxn2|14236|forkhead box N2	BC138824|Foxn2|14236|forkhead box N2	BC138825|Foxn2|14236|forkhead box N2
mm9_v1_chr2_+_48669628_48669670	1.39151	AAUGCCC	NM_007396|Acvr2a|11480|activin receptor IIA	AK081022|Acvr2a|11480|activin receptor IIA
mm9_v1_chrX_-_35809466_35809639	1.38431	AAUGCCC	BC138718|Lamp2|16784|lysosomal-associated membrane protein 2	BC138723|Lamp2|16784|lysosomal-associated membrane protein 2	J05287|Lamp2|16784|lysosomal-associated membrane protein 2	AK048174|Lamp2|16784|lysosomal-associated membrane protein 2	AK159272|Lamp2|16784|lysosomal-associated membrane protein 2	AK159731|Lamp2|16784|lysosomal-associated membrane protein 2	AK136550|Lamp2|16784|lysosomal-associated membrane protein 2	AK012149|Lamp2|16784|lysosomal-associated membrane protein 2	AK032974|Lamp2|16784|lysosomal-associated membrane protein 2	AK150766|Lamp2|16784|lysosomal-associated membrane protein 2	AK088804|Lamp2|16784|lysosomal-associated membrane protein 2	AK146731|Lamp2|16784|lysosomal-associated membrane protein 2	AK078193|Lamp2|16784|lysosomal-associated membrane protein 2	NM_001017959|Lamp2|16784|lysosomal-associated membrane protein 2	NM_010685|Lamp2|16784|lysosomal-associated membrane protein 2	AK163933|Lamp2|16784|lysosomal-associated membrane protein 2
mm9_v1_chr15_-_38448923_38449033	1.3651	AAUGCCC	BC046814|Azin1|54375|antizyme inhibitor 1	BC021152|Azin1|54375|antizyme inhibitor 1	BC019412|Azin1|54375|antizyme inhibitor 1	AK088112|Azin1|54375|antizyme inhibitor 1	AK088671|Azin1|54375|antizyme inhibitor 1	AK133914|Azin1|54375|antizyme inhibitor 1	AK049680|Azin1|54375|antizyme inhibitor 1	NM_001102458|Azin1|54375|antizyme inhibitor 1	NM_018745|Azin1|54375|antizyme inhibitor 1
mm9_v1_chr11_-_104303565_104303604	1.36073	AAUGCCC	AK153679|1700081L11Rik|76719|RIKEN cDNA 1700081L11 gene	AK122484|1700081L11Rik|76719|RIKEN cDNA 1700081L11 gene	NM_001081045|1700081L11Rik|76719|RIKEN cDNA 1700081L11 gene
mm9_v1_chr5_-_121038602_121038704	1.3505	AAUGCCC	AK037856|Tpcn1|252972|two pore channel 1	AK077411|Tpcn1|252972|two pore channel 1	BC058951|Tpcn1|252972|two pore channel 1	NM_145853|Tpcn1|252972|two pore channel 1	AF217002|Tpcn1|252972|two pore channel 1	AK148129|Tpcn1|252972|two pore channel 1
mm9_v1_chr15_+_58247016_58247063	1.34353	AAUGCCC	AK137324|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	NM_145959|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	BC070426|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed
mm9_v1_chr1_+_9838330_9838477	1.33058	AAUGCCC	AK030314|Sgk3|170755|serum/glucocorticoid regulated kinase 3	NM_001037759|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK166531|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK146561|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK031328|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171959|Sgk3|170755|serum/glucocorticoid regulated kinase 3
mm9_v1_chr2_+_109516053_109516053	1.31286	AAUGCCC	AY057909|Bdnf|12064|brain derived neurotrophic factor	AY057910|Bdnf|12064|brain derived neurotrophic factor	AY057911|Bdnf|12064|brain derived neurotrophic factor	EF125670|Bdnf|12064|brain derived neurotrophic factor	EF125671|Bdnf|12064|brain derived neurotrophic factor	EF125672|Bdnf|12064|brain derived neurotrophic factor	NM_001048139|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr2_+_155207581_155207616	1.29618	AAUGCCC	AJ297793|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK146589|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	BC043086|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	NM_178111|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK149495|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr1_-_57028171_57028177	1.28572	AAUGCCC	AF319623|Satb2|212712|special AT-rich sequence binding protein 2	NM_139146|Satb2|212712|special AT-rich sequence binding protein 2
mm9_v1_chr8_-_108351060_108351249	1.23379	AAUGCCC	AK173177|Ranbp10|74334|RAN binding protein 10	BC024698|Ranbp10|74334|RAN binding protein 10	AK048772|Ranbp10|74334|RAN binding protein 10	EU281316|Ranbp10|74334|RAN binding protein 10	AY337314|Ranbp10|74334|RAN binding protein 10	NM_145824|Ranbp10|74334|RAN binding protein 10
mm9_v1_chr3_-_95111053_95111097	1.17005	AAUGCCC	AJ401160|Anxa9|71790|annexin A9	AK010128|Anxa9|71790|annexin A9	NM_023628|Anxa9|71790|annexin A9
mm9_v1_chr11_-_59778306_59778447	1.1657	AAUGCCC	CT010376|Rasd1|19416|RAS, dexamethasone-induced 1	BC034166|Rasd1|19416|RAS, dexamethasone-induced 1	AF009246|Rasd1|19416|RAS, dexamethasone-induced 1	NM_009026|Rasd1|19416|RAS, dexamethasone-induced 1	AK038932|Rasd1|19416|RAS, dexamethasone-induced 1
mm9_v1_chr13_+_45485106_45485325	1.11656	AAUGCCC	AK034887|Mylip|218203|myosin regulatory light chain interacting protein	AK159478|Mylip|218203|myosin regulatory light chain interacting protein	NM_153789|Mylip|218203|myosin regulatory light chain interacting protein	AK171888|Mylip|218203|myosin regulatory light chain interacting protein	BC010206|Mylip|218203|myosin regulatory light chain interacting protein	AY434449|Mylip|218203|myosin regulatory light chain interacting protein	NM_181043|Mylip|218203|myosin regulatory light chain interacting protein
mm9_v1_chr15_-_93105514_93105610	1.11142	AAUGCCC	AK147387|Gxylt1|223827|glucoside xylosyltransferase 1	NM_001033275|Gxylt1|223827|glucoside xylosyltransferase 1	BC141302|Gxylt1|223827|glucoside xylosyltransferase 1	BC171972|Gxylt1|223827|glucoside xylosyltransferase 1
mm9_v1_chr9_-_75407338_75407491	1.09033	AAUGCCC	AF237630|Tmod3|50875|tropomodulin 3	AF177172|Tmod3|50875|tropomodulin 3	BC082595|Tmod3|50875|tropomodulin 3	AK167723|Tmod3|50875|tropomodulin 3	AK017725|Tmod3|50875|tropomodulin 3	AK050372|Tmod3|50875|tropomodulin 3	AK082971|Tmod3|50875|tropomodulin 3	AK147017|Tmod3|50875|tropomodulin 3	AK169218|Tmod3|50875|tropomodulin 3	NM_016963|Tmod3|50875|tropomodulin 3
mm9_v1_chr8_-_82581887_82581932	1.0665	AAUGCCC	AF116865|Hhip|15245|Hedgehog-interacting protein	BC053012|Hhip|15245|Hedgehog-interacting protein	AK031539|Hhip|15245|Hedgehog-interacting protein	NM_020259|Hhip|15245|Hedgehog-interacting protein
mm9_v1_chr16_-_38713106_38713149	1.02792	AAUGCCC	NM_020260|Arhgap31|12549|Rho GTPase activating protein 31
mm9_v1_chr4_-_3865501_3865606	0.995192	AAUGCCC	BC139283|Plag1|56711|pleiomorphic adenoma gene 1	BC139285|Plag1|56711|pleiomorphic adenoma gene 1	AY574219|Plag1|56711|pleiomorphic adenoma gene 1	AK044405|Plag1|56711|pleiomorphic adenoma gene 1	NM_019969|Plag1|56711|pleiomorphic adenoma gene 1
mm9_v1_chr9_+_113840051_113840064	0.956524	AAUGCCC	AK143282|Ubp1|22221|upstream binding protein 1	NM_001083319|Ubp1|22221|upstream binding protein 1	NM_013699|Ubp1|22221|upstream binding protein 1
mm9_v1_chr6_+_115881925_115881944	0.923918	AAUGCCC	AK044333|Rho|212541|rhodopsin	AK044412|Rho|212541|rhodopsin	BC094460|Rho|212541|rhodopsin	BC031766|Rho|212541|rhodopsin	BC013125|Rho|212541|rhodopsin	NM_145383|Rho|212541|rhodopsin
mm9_v1_chr3_-_95110715_95110725	0.896257	AAUGCCC	BC062140|Anxa9|71790|annexin A9	AK003395|Anxa9|71790|annexin A9	NM_001085383|Anxa9|71790|annexin A9
mm9_v1_chr9_+_65524331_65524426	0.894056	AAUGCCC	AK169243|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	NM_010952|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK143231|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK146074|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK160444|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK168853|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK168662|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	BC055442|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	BC083114|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AF057298|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	BC005477|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	BC110690|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene
mm9_v1_chr1_-_64784316_64784324	0.887893	AAUGCCC	AK039402|Fzd5|14367|frizzled homolog 5 (Drosophila)	NM_001042659|Fzd5|14367|frizzled homolog 5 (Drosophila)	NM_022721|Fzd5|14367|frizzled homolog 5 (Drosophila)	AK030111|Fzd5|14367|frizzled homolog 5 (Drosophila)
mm9_v1_chr7_-_123174560_123174560	0.88291	AAUGCCC	AK030713|Sox6|20679|SRY-box containing gene 6	NM_001025560|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr19_+_43764161_43764183	0.871586	AAUGCCC	AK170546|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7	NM_053103|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7
mm9_v1_chr19_-_5106937_5107039	0.851003	AAUGCCC	AB232584|Rab1b|76308|RAB1B, member RAS oncogene family	BC016408|Rab1b|76308|RAB1B, member RAS oncogene family	AK003609|Rab1b|76308|RAB1B, member RAS oncogene family	NM_029576|Rab1b|76308|RAB1B, member RAS oncogene family	AK042020|Rab1b|76308|RAB1B, member RAS oncogene family	AK156726|Rab1b|76308|RAB1B, member RAS oncogene family
mm9_v1_chrX_+_97963061_97963090	0.850674	AAUGCCC	AK122474|Dlg3|53310|discs, large homolog 3 (Drosophila)	NM_001177778|Dlg3|53310|discs, large homolog 3 (Drosophila)	BC094368|Dlg3|53310|discs, large homolog 3 (Drosophila)	NM_016747|Dlg3|53310|discs, large homolog 3 (Drosophila)	D87117|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr8_+_91045232_91045286	0.84912	AAUGCCC	AK166564|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	NM_027280|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AK076164|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AK082367|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	BC034838|Nkd1|93960|naked cuticle 1 homolog (Drosophila)
mm9_v1_chr12_-_74214214_74214231	0.824001	AAUGCCC	BC137931|Six4|20474|sine oculis-related homeobox 4 homolog (Drosophila)	BC137934|Six4|20474|sine oculis-related homeobox 4 homolog (Drosophila)	D50416|Six4|20474|sine oculis-related homeobox 4 homolog (Drosophila)	NM_011382|Six4|20474|sine oculis-related homeobox 4 homolog (Drosophila)
mm9_v1_chr3_-_84024766_84024812	0.822931	AAUGCCC	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr17_-_28623006_28623098	0.822389	AAUGCCC	U36220|Fkbp5|14229|FK506 binding protein 5	BC015260|Fkbp5|14229|FK506 binding protein 5	AK169795|Fkbp5|14229|FK506 binding protein 5	NM_010220|Fkbp5|14229|FK506 binding protein 5	U16959|Fkbp5|14229|FK506 binding protein 5
mm9_v1_chr13_+_47218048_47218098	0.80493	AAUGCCC	AK038964|Rnf144b|218215|ring finger protein 144B	AK053529|Rnf144b|218215|ring finger protein 144B	NM_146042|Rnf144b|218215|ring finger protein 144B
mm9_v1_chr17_-_67703726_67703889	0.789519	AAUGCCC	X58287|Ptprm|19274|protein tyrosine phosphatase, receptor type, M	BC058614|Ptprm|19274|protein tyrosine phosphatase, receptor type, M	NM_008984|Ptprm|19274|protein tyrosine phosphatase, receptor type, M
mm9_v1_chr7_-_17613079_17613266	0.772053	AAUGCCC	U12204|Ppp5c|19060|protein phosphatase 5, catalytic subunit	BC003744|Ppp5c|19060|protein phosphatase 5, catalytic subunit	AF018262|Ppp5c|19060|protein phosphatase 5, catalytic subunit	NM_011155|Ppp5c|19060|protein phosphatase 5, catalytic subunit
mm9_v1_chrX_+_97969784_97969833	0.768268	AAUGCCC	NM_001177779|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr14_+_117324518_117324572	0.764749	AAUGCCC	AK164668|Gpc6|23888|glypican 6	AK135442|Gpc6|23888|glypican 6	NM_001079844|Gpc6|23888|glypican 6	NM_011821|Gpc6|23888|glypican 6
mm9_v1_chrX_+_19941606_19941782	0.763696	AAUGCCC	AK132713|Rp2h|19889|retinitis pigmentosa 2 homolog (human)	AK033954|Rp2h|19889|retinitis pigmentosa 2 homolog (human)	AK162309|Rp2h|19889|retinitis pigmentosa 2 homolog (human)	AK044002|Rp2h|19889|retinitis pigmentosa 2 homolog (human)	BC049698|Rp2h|19889|retinitis pigmentosa 2 homolog (human)	AK050418|Rp2h|19889|retinitis pigmentosa 2 homolog (human)	NM_133669|Rp2h|19889|retinitis pigmentosa 2 homolog (human)	AK017422|Rp2h|19889|retinitis pigmentosa 2 homolog (human)	AK076907|Rp2h|19889|retinitis pigmentosa 2 homolog (human)	AJ303371|Rp2h|19889|retinitis pigmentosa 2 homolog (human)
mm9_v1_chr2_-_131970786_131970867	0.749439	AAUGCCC	AY004874|Slc23a2|54338|solute carrier family 23 (nucleobase transporters), member 2	AK087175|Slc23a2|54338|solute carrier family 23 (nucleobase transporters), member 2	AK169991|Slc23a2|54338|solute carrier family 23 (nucleobase transporters), member 2	NM_018824|Slc23a2|54338|solute carrier family 23 (nucleobase transporters), member 2
mm9_v1_chr15_+_80541675_80541764	0.720158	AAUGCCC	AK048628|Tnrc6b|213988|trinucleotide repeat containing 6b	NM_144812|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr11_+_20443168_20443285	0.670561	AAUGCCC	AK147674|Sertad2|58172|SERTA domain containing 2	AK142268|Sertad2|58172|SERTA domain containing 2	NM_021372|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr7_-_54263783_54263783	0.668541	AAUGCCC	NM_175318|Spty2d1|101685|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
mm9_v1_chr12_-_74147698_74147707	0.666545	AAUGCCC	AK131925|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	NM_009189|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	AK144753|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr9_+_106073255_106073259	0.664514	AAUGCCC	AK037620|Wdr82|77305|WD repeat domain containing 82	AK035109|Wdr82|77305|WD repeat domain containing 82	AK149692|Wdr82|77305|WD repeat domain containing 82	AK159240|Wdr82|77305|WD repeat domain containing 82	AK172474|Wdr82|77305|WD repeat domain containing 82	NM_029896|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr3_+_51028368_51028391	0.646389	AAUGCCC	AK087790|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	NM_009834|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	AF183960|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	AK149340|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)
mm9_v1_chr16_-_44028057_44028057	0.643852	AAUGCCC	AK029543|Gramd1c|207798|GRAM domain containing 1C	NM_001172107|Gramd1c|207798|GRAM domain containing 1C
mm9_v1_chr18_-_39646734_39646900	0.634093	AAUGCCC	AK037733|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	DQ504162|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	HM236293|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13358|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13359|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	NM_008173|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129912|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129913|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X04435|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr11_+_20531941_20532003	0.571977	AAUGCCC	AK146621|Sertad2|58172|SERTA domain containing 2	NM_001038625|Sertad2|58172|SERTA domain containing 2	AK146897|Sertad2|58172|SERTA domain containing 2	AK132846|Sertad2|58172|SERTA domain containing 2	AK142018|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr10_-_90634236_90634341	0.567431	AAUGCCC	U39073|Tmpo|21917|thymopoietin	U39078|Tmpo|21917|thymopoietin	U39074|Tmpo|21917|thymopoietin	U39075|Tmpo|21917|thymopoietin	U39076|Tmpo|21917|thymopoietin	U39077|Tmpo|21917|thymopoietin	AK150515|Tmpo|21917|thymopoietin	AK153281|Tmpo|21917|thymopoietin	AK150305|Tmpo|21917|thymopoietin	AK141845|Tmpo|21917|thymopoietin	AK156206|Tmpo|21917|thymopoietin	AK165282|Tmpo|21917|thymopoietin	AK151936|Tmpo|21917|thymopoietin	AK152737|Tmpo|21917|thymopoietin	AK165851|Tmpo|21917|thymopoietin	AK144642|Tmpo|21917|thymopoietin	AK146903|Tmpo|21917|thymopoietin	NM_001080129|Tmpo|21917|thymopoietin	NM_001080130|Tmpo|21917|thymopoietin	NM_001080131|Tmpo|21917|thymopoietin	NM_001080132|Tmpo|21917|thymopoietin	NM_001080134|Tmpo|21917|thymopoietin	NM_011605|Tmpo|21917|thymopoietin
mm9_v1_chr18_-_6135924_6136095	0.567175	AAUGCCC	AK031648|Arhgap12|75415|Rho GTPase activating protein 12	AK012717|Arhgap12|75415|Rho GTPase activating protein 12	AK077063|Arhgap12|75415|Rho GTPase activating protein 12	NM_001039692|Arhgap12|75415|Rho GTPase activating protein 12	NM_029277|Arhgap12|75415|Rho GTPase activating protein 12
mm9_v1_chr8_-_73363618_73363618	0.564989	AAUGCCC	AK014582|Arrdc2|70807|arrestin domain containing 2	NM_027560|Arrdc2|70807|arrestin domain containing 2
mm9_v1_chr5_-_76733540_76733585	0.555068	AAUGCCC	AF000998|Clock|12753|circadian locomotor output cycles kaput	NM_007715|Clock|12753|circadian locomotor output cycles kaput
mm9_v1_chr4_+_115894518_115894602	0.542442	AAUGCCC	BC053102|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	NM_181585|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	AK031936|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm9_v1_chr14_+_47917895_47918025	0.520038	AAUGCCC	AK164183|Mapk1ip1l|218975|mitogen-activated protein kinase 1 interacting protein 1-like	AK048061|Mapk1ip1l|218975|mitogen-activated protein kinase 1 interacting protein 1-like	AK086896|Mapk1ip1l|218975|mitogen-activated protein kinase 1 interacting protein 1-like	AK168694|Mapk1ip1l|218975|mitogen-activated protein kinase 1 interacting protein 1-like	BC047201|Mapk1ip1l|218975|mitogen-activated protein kinase 1 interacting protein 1-like	AK169333|Mapk1ip1l|218975|mitogen-activated protein kinase 1 interacting protein 1-like	NM_178684|Mapk1ip1l|218975|mitogen-activated protein kinase 1 interacting protein 1-like
mm9_v1_chr16_-_44016471_44016548	0.490839	AAUGCCC	BC037472|Gramd1c|207798|GRAM domain containing 1C	AK129016|Gramd1c|207798|GRAM domain containing 1C	AK035257|Gramd1c|207798|GRAM domain containing 1C	NM_153528|Gramd1c|207798|GRAM domain containing 1C
mm9_v1_chr8_-_80248313_80248382	0.489422	AAUGCCC	BC008277|Ednra|13617|endothelin receptor type A	AK017486|Ednra|13617|endothelin receptor type A	NM_010332|Ednra|13617|endothelin receptor type A	AK042211|Ednra|13617|endothelin receptor type A
mm9_v1_chr16_+_44139908_44140168	0.484379	AAUGCCC	NM_028108|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK167141|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK168394|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC057117|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK135658|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK156791|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK011160|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK145345|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC046283|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC004086|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK198408|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC055846|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm9_v1_chr16_-_30388534_30388615	0.468566	AAUGCCC	NM_001128094|Atp13a3|224088|ATPase type 13A3	NM_001128096|Atp13a3|224088|ATPase type 13A3
mm9_v1_chr7_-_123138599_123138599	0.46672	AAUGCCC	NM_011445|Sox6|20679|SRY-box containing gene 6	U32614|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr11_-_61743706_61743758	0.450033	AAUGCCC	AK049399|Akap10|56697|A kinase (PRKA) anchor protein 10	AK083255|Akap10|56697|A kinase (PRKA) anchor protein 10	NM_019921|Akap10|56697|A kinase (PRKA) anchor protein 10	AK162966|Akap10|56697|A kinase (PRKA) anchor protein 10
mm9_v1_chr4_-_131767968_131768170	0.444414	AAUGCCC	AK083882|Ythdf2|213541|YTH domain family 2	BC028994|Ythdf2|213541|YTH domain family 2	BC014797|Ythdf2|213541|YTH domain family 2	AK150350|Ythdf2|213541|YTH domain family 2	AK150669|Ythdf2|213541|YTH domain family 2	AK151392|Ythdf2|213541|YTH domain family 2	AK151862|Ythdf2|213541|YTH domain family 2	AK159548|Ythdf2|213541|YTH domain family 2	AK031616|Ythdf2|213541|YTH domain family 2	AK144209|Ythdf2|213541|YTH domain family 2	AK034655|Ythdf2|213541|YTH domain family 2	NM_145393|Ythdf2|213541|YTH domain family 2
mm9_v1_chr1_+_34906775_34906890	0.435331	AAUGCCC	NM_145516|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK148653|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	BC057994|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK039771|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK166091|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AF189817|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK149868|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK150074|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK082118|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK179998|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2
mm9_v1_chr3_+_88336316_88336316	0.422813	AAUGCCC	NM_001029890|Mex3a|72640|mex3 homolog A (C. elegans)
mm9_v1_chr11_-_102157904_102158007	0.418536	AAUGCCC	NM_001098836|Atxn7l3|217218|ataxin 7-like 3	NM_001098837|Atxn7l3|217218|ataxin 7-like 3	AK090368|Atxn7l3|217218|ataxin 7-like 3
mm9_v1_chrX_+_97972559_97972657	0.41709	AAUGCCC	NM_001177780|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK159655|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK167365|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK148464|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr10_+_39451923_39451975	0.416912	AAUGCCC	AK032532|Rev3l|19714|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)	BC048946|Rev3l|19714|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)	AB031049|Rev3l|19714|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)	NM_011264|Rev3l|19714|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)
mm9_v1_chr8_+_107694536_107694875	0.413656	AAUGCCC	AK089094|Cbfb|12400|core binding factor beta	NM_001161456|Cbfb|12400|core binding factor beta	NM_001161457|Cbfb|12400|core binding factor beta	NM_001161458|Cbfb|12400|core binding factor beta	NM_022309|Cbfb|12400|core binding factor beta	D14570|Cbfb|12400|core binding factor beta	D14571|Cbfb|12400|core binding factor beta	D14572|Cbfb|12400|core binding factor beta	BC026749|Cbfb|12400|core binding factor beta	BC040752|Cbfb|12400|core binding factor beta	BC006763|Cbfb|12400|core binding factor beta	L03305|Cbfb|12400|core binding factor beta	L03306|Cbfb|12400|core binding factor beta
mm9_v1_chr11_+_77796215_77796321	0.409666	AAUGCCC	AK170155|Phf12|268448|PHD finger protein 12	AK089226|Phf12|268448|PHD finger protein 12	AK010807|Phf12|268448|PHD finger protein 12	AK155354|Phf12|268448|PHD finger protein 12	AK053787|Phf12|268448|PHD finger protein 12	NM_174852|Phf12|268448|PHD finger protein 12
mm9_v1_chr2_+_109731003_109731053	0.409513	AAUGCCC	AK135810|Lin7c|22343|lin-7 homolog C (C. elegans)	AK083299|Lin7c|22343|lin-7 homolog C (C. elegans)	AK015399|Lin7c|22343|lin-7 homolog C (C. elegans)	AK078923|Lin7c|22343|lin-7 homolog C (C. elegans)	AK128989|Lin7c|22343|lin-7 homolog C (C. elegans)	BC052471|Lin7c|22343|lin-7 homolog C (C. elegans)	AK133531|Lin7c|22343|lin-7 homolog C (C. elegans)	AF173083|Lin7c|22343|lin-7 homolog C (C. elegans)	AF087695|Lin7c|22343|lin-7 homolog C (C. elegans)	BC046966|Lin7c|22343|lin-7 homolog C (C. elegans)	NM_011699|Lin7c|22343|lin-7 homolog C (C. elegans)	AK161076|Lin7c|22343|lin-7 homolog C (C. elegans)
mm9_v1_chr14_-_19071459_19071620	0.397949	AAUGCCC	BC096461|Nr1d2|353187|nuclear receptor subfamily 1, group D, member 2	AK079075|Nr1d2|353187|nuclear receptor subfamily 1, group D, member 2	AK054522|Nr1d2|353187|nuclear receptor subfamily 1, group D, member 2	U12142|Nr1d2|353187|nuclear receptor subfamily 1, group D, member 2	NM_011584|Nr1d2|353187|nuclear receptor subfamily 1, group D, member 2
mm9_v1_chr11_+_33863012_33863012	0.394066	AAUGCCC	AF020711|Kcnmb1|16533|potassium large conductance calcium-activated channel, subfamily M, beta member 1	NM_031169|Kcnmb1|16533|potassium large conductance calcium-activated channel, subfamily M, beta member 1
mm9_v1_chr2_-_101679136_101679136	0.384741	AAUGCCC	NM_001110849|Prr5l|72446|proline rich 5 like
mm9_v1_chr1_+_108831025_108831035	0.376527	AAUGCCC	AK009018|Serpinb12|71869|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	NM_027971|Serpinb12|71869|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12
mm9_v1_chr2_+_129626252_129626487	0.373352	AAUGCCC	NM_001038635|Stk35|67333|serine/threonine kinase 35	NM_183262|Stk35|67333|serine/threonine kinase 35	BC138904|Stk35|67333|serine/threonine kinase 35	BC138905|Stk35|67333|serine/threonine kinase 35	AK165988|Stk35|67333|serine/threonine kinase 35	AK006778|Stk35|67333|serine/threonine kinase 35
mm9_v1_chr8_+_91051531_91051531	0.372064	AAUGCCC	NM_001163660|Nkd1|93960|naked cuticle 1 homolog (Drosophila)
mm9_v1_chr10_+_84039622_84039691	0.371183	AAUGCCC	AK040850|Tcp11l2|216198|t-complex 11 (mouse) like 2	BC029663|Tcp11l2|216198|t-complex 11 (mouse) like 2	NM_146008|Tcp11l2|216198|t-complex 11 (mouse) like 2
mm9_v1_chr15_+_80629020_80629144	0.363967	AAUGCCC	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr4_-_120770603_120770864	0.358885	AAUGCCC	AY029194|Zmpste24|230709|zinc metallopeptidase, STE24 homolog (S. cerevisiae)	BC138578|Zmpste24|230709|zinc metallopeptidase, STE24 homolog (S. cerevisiae)	BC023740|Zmpste24|230709|zinc metallopeptidase, STE24 homolog (S. cerevisiae)	AK170946|Zmpste24|230709|zinc metallopeptidase, STE24 homolog (S. cerevisiae)	AJ487544|Zmpste24|230709|zinc metallopeptidase, STE24 homolog (S. cerevisiae)	AK083566|Zmpste24|230709|zinc metallopeptidase, STE24 homolog (S. cerevisiae)	NM_172700|Zmpste24|230709|zinc metallopeptidase, STE24 homolog (S. cerevisiae)
mm9_v1_chr4_+_59202363_59202463	0.356167	AAUGCCC	AK138848|Ugcg|22234|UDP-glucose ceramide glucosyltransferase	BC050828|Ugcg|22234|UDP-glucose ceramide glucosyltransferase	NM_011673|Ugcg|22234|UDP-glucose ceramide glucosyltransferase
mm9_v1_chr16_-_35363927_35364003	0.340498	AAUGCCC	AK037540|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	AK044615|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	AK007341|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	AK082516|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	NM_133704|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)
mm9_v1_chr14_+_122277821_122277919	0.306743	AAUGCCC	NM_026861|Ubac2|68889|ubiquitin associated domain containing 2	BC024467|Ubac2|68889|ubiquitin associated domain containing 2	AK049109|Ubac2|68889|ubiquitin associated domain containing 2	AK158177|Ubac2|68889|ubiquitin associated domain containing 2
mm9_v1_chr16_+_87699143_87699302	0.292481	AAUGCCC	D86603|Bach1|12013|BTB and CNC homology 1	AK140765|Bach1|12013|BTB and CNC homology 1	AK140903|Bach1|12013|BTB and CNC homology 1	NM_007520|Bach1|12013|BTB and CNC homology 1	AK030871|Bach1|12013|BTB and CNC homology 1	AK141405|Bach1|12013|BTB and CNC homology 1	BC057894|Bach1|12013|BTB and CNC homology 1
mm9_v1_chr4_-_147462051_147462172	0.266636	AAUGCCC	AF102548|Agtrap|11610|angiotensin II, type I receptor-associated protein	BC057196|Agtrap|11610|angiotensin II, type I receptor-associated protein	AK007502|Agtrap|11610|angiotensin II, type I receptor-associated protein	AK036598|Agtrap|11610|angiotensin II, type I receptor-associated protein	AK007383|Agtrap|11610|angiotensin II, type I receptor-associated protein	AK152467|Agtrap|11610|angiotensin II, type I receptor-associated protein	NM_009642|Agtrap|11610|angiotensin II, type I receptor-associated protein
mm9_v1_chr1_+_168931547_168931719	0.258237	AAUGCCC	NM_001160261|Fam78b|226610|family with sequence similarity 78, member B	NM_001160262|Fam78b|226610|family with sequence similarity 78, member B	NM_175461|Fam78b|226610|family with sequence similarity 78, member B	BC132161|Fam78b|226610|family with sequence similarity 78, member B	BC132525|Fam78b|226610|family with sequence similarity 78, member B	AK144212|Fam78b|226610|family with sequence similarity 78, member B	AK047703|Fam78b|226610|family with sequence similarity 78, member B	BC066094|Fam78b|226610|family with sequence similarity 78, member B
mm9_v1_chr5_-_90795190_90795275	0.25686	AAUGCCC	AK031350|Ankrd17|81702|ankyrin repeat domain 17	NM_030886|Ankrd17|81702|ankyrin repeat domain 17	NM_198010|Ankrd17|81702|ankyrin repeat domain 17
mm9_v1_chr5_+_13399301_13399308	0.250738	AAUGCCC	D85028|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	NM_009152|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm9_v1_chr2_-_101637773_101637865	0.249346	AAUGCCC	BC048394|Prr5l|72446|proline rich 5 like	AK030499|Prr5l|72446|proline rich 5 like	NM_001083810|Prr5l|72446|proline rich 5 like	NM_175181|Prr5l|72446|proline rich 5 like	AK145981|Prr5l|72446|proline rich 5 like
mm9_v1_chr7_+_5031809_5032021	0.245719	AAUGCCC	AK155033|Epn1|13854|epsin 1	BC067206|Epn1|13854|epsin 1	BC099682|Epn1|13854|epsin 1	NM_010147|Epn1|13854|epsin 1
mm9_v1_chr7_+_75097142_75097267	0.240598	AAUGCCC	NM_010513|Igf1r|16001|insulin-like growth factor I receptor
mm9_v1_chr3_+_135101664_135101764	0.239509	AAUGCCC	AK153111|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK152231|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK153410|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167801|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK151594|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK032885|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167077|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK090099|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC098220|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC024351|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK004001|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK049906|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	NM_025356|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167650|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK159546|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK152541|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK159963|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC057941|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK088448|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
mm9_v1_chr15_-_98701613_98701613	0.238624	AAUGCCC	NM_001033276|Mll2|381022|myeloid/lymphoid or mixed-lineage leukemia 2
mm9_v1_chr10_-_119913990_119913990	0.237683	AAUGCCC	NM_010441|Hmga2|15364|high mobility group AT-hook 2
mm9_v1_chr17_-_36408313_36408377	0.225367	AAUGCCC	AK220298|Trim39|79263|tripartite motif-containing 39	AK145861|Trim39|79263|tripartite motif-containing 39	AK053507|Trim39|79263|tripartite motif-containing 39	NM_178281|Trim39|79263|tripartite motif-containing 39
mm9_v1_chr15_-_73015345_73015397	0.214259	AAUGCCC	NM_153178|Eif2c2|239528|eukaryotic translation initiation factor 2C, 2
mm9_v1_chr16_+_33380860_33381006	0.205439	AAUGCCC	NM_011749|Zfp148|22661|zinc finger protein 148	AF316548|Zfp148|22661|zinc finger protein 148	X98096|Zfp148|22661|zinc finger protein 148	BC026144|Zfp148|22661|zinc finger protein 148
mm9_v1_chr17_-_10512217_10512250	0.203242	AAUGCCC	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr6_-_22306070_22306242	0.202083	AAUGCCC	AY424275|Fam3c|27999|family with sequence similarity 3, member C	BC009086|Fam3c|27999|family with sequence similarity 3, member C	NM_138587|Fam3c|27999|family with sequence similarity 3, member C	BC055853|Fam3c|27999|family with sequence similarity 3, member C	AK154498|Fam3c|27999|family with sequence similarity 3, member C	AK170887|Fam3c|27999|family with sequence similarity 3, member C	BC069880|Fam3c|27999|family with sequence similarity 3, member C
mm9_v1_chr9_-_62828677_62828715	0.195398	AAUGCCC	AF077950|Pias1|56469|protein inhibitor of activated STAT 1	BC051417|Pias1|56469|protein inhibitor of activated STAT 1	AK075708|Pias1|56469|protein inhibitor of activated STAT 1	NM_019663|Pias1|56469|protein inhibitor of activated STAT 1	AK153871|Pias1|56469|protein inhibitor of activated STAT 1
mm9_v1_chr11_+_77499638_77499656	0.187903	AAUGCCC	AK030113|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK160601|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	NM_001024205|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK170764|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK122494|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2
mm9_v1_chr11_-_97049185_97049278	0.181034	AAUGCCC	BC055115|Kpnb1|16211|karyopherin (importin) beta 1	AK077709|Kpnb1|16211|karyopherin (importin) beta 1	NM_008379|Kpnb1|16211|karyopherin (importin) beta 1	AK147175|Kpnb1|16211|karyopherin (importin) beta 1
mm9_v1_chr1_+_140860285_140860402	0.177382	AAUGCCC	NM_001166501|Dennd1b|329260|DENN/MADD domain containing 1B	BC042698|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr12_-_109241423_109241623	0.17597	AAUGCCC	BC019503|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AF186019|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AK088219|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043551|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043553|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043583|Bcl11b|58208|B-cell leukemia/lymphoma 11B	NM_001079883|Bcl11b|58208|B-cell leukemia/lymphoma 11B	NM_021399|Bcl11b|58208|B-cell leukemia/lymphoma 11B
mm9_v1_chr2_-_94278303_94278325	0.171447	AAUGCCC	AK137466|Api5|11800|apoptosis inhibitor 5	NM_007466|Api5|11800|apoptosis inhibitor 5
mm9_v1_chr2_+_18598644_18598801	0.165992	AAUGCCC	M64279|Bmi1|12151|Bmi1 polycomb ring finger oncogene	NM_007552|Bmi1|12151|Bmi1 polycomb ring finger oncogene
mm9_v1_chr19_-_7416286_7416363	0.164215	AAUGCCC	BC058556|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	AK172444|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080388|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080389|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_007928|Mark2|13728|MAP/microtubule affinity-regulating kinase 2
mm9_v1_chr18_+_65590615_65590687	0.156925	AAUGCCC	AK164626|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	AK041919|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	AK085071|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	NM_172833|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	AK045200|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	BC110487|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	BC110488|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1
mm9_v1_chr18_-_6516073_6516084	0.14966	AAUGCCC	AK148194|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	AF079765|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	NM_007935|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)
mm9_v1_chr4_+_85699818_85699939	0.138154	AAUGCCC	NM_029967|Adamtsl1|77739|ADAMTS-like 1	AK020115|Adamtsl1|77739|ADAMTS-like 1	BC062814|Adamtsl1|77739|ADAMTS-like 1	AK045085|Adamtsl1|77739|ADAMTS-like 1	BC139339|Adamtsl1|77739|ADAMTS-like 1	BC139367|Adamtsl1|77739|ADAMTS-like 1
mm9_v1_chr18_-_68459958_68459986	0.136726	AAUGCCC	AK077093|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene	NM_153794|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene
mm9_v1_chr7_-_142129892_142130112	0.134263	AAUGCCC	BC158077|Fam196a|627214|family with sequence similarity 196, member A	BC158080|Fam196a|627214|family with sequence similarity 196, member A	AK046823|Fam196a|627214|family with sequence similarity 196, member A	AK046846|Fam196a|627214|family with sequence similarity 196, member A	AK140373|Fam196a|627214|family with sequence similarity 196, member A	NM_001143802|Fam196a|627214|family with sequence similarity 196, member A
mm9_v1_chr10_-_121023773_121023881	0.13104	AAUGCCC	AK083214|Tbk1|56480|TANK-binding kinase 1	AK004649|Tbk1|56480|TANK-binding kinase 1	AK168193|Tbk1|56480|TANK-binding kinase 1	NM_019786|Tbk1|56480|TANK-binding kinase 1
mm9_v1_chr11_+_29618531_29618569	0.127778	AAUGCCC	NM_024226|Rtn4|68585|reticulon 4	AY102283|Rtn4|68585|reticulon 4
mm9_v1_chr5_+_110564841_110564902	0.120709	AAUGCCC	NM_172717|Chfr|231600|checkpoint with forkhead and ring finger domains	AK039281|Chfr|231600|checkpoint with forkhead and ring finger domains	AK133154|Chfr|231600|checkpoint with forkhead and ring finger domains	AK154038|Chfr|231600|checkpoint with forkhead and ring finger domains	AK048930|Chfr|231600|checkpoint with forkhead and ring finger domains	AK147892|Chfr|231600|checkpoint with forkhead and ring finger domains	AK077629|Chfr|231600|checkpoint with forkhead and ring finger domains	AK148436|Chfr|231600|checkpoint with forkhead and ring finger domains	AK155295|Chfr|231600|checkpoint with forkhead and ring finger domains	AK155525|Chfr|231600|checkpoint with forkhead and ring finger domains	AK052473|Chfr|231600|checkpoint with forkhead and ring finger domains	AK169193|Chfr|231600|checkpoint with forkhead and ring finger domains	BC049792|Chfr|231600|checkpoint with forkhead and ring finger domains	AK169182|Chfr|231600|checkpoint with forkhead and ring finger domains
mm9_v1_chr1_+_69873535_69873574	0.104183	AAUGCCC	AK015884|Spag16|66722|sperm associated antigen 16	BC120668|Spag16|66722|sperm associated antigen 16	BC145006|Spag16|66722|sperm associated antigen 16	AF490391|Spag16|66722|sperm associated antigen 16	NM_029160|Spag16|66722|sperm associated antigen 16	AK083083|Spag16|66722|sperm associated antigen 16
mm9_v1_chr6_+_21899614_21899692	0.0929151	AAUGCCC	NM_023626|Ing3|71777|inhibitor of growth family, member 3	AY007791|Ing3|71777|inhibitor of growth family, member 3	AK080787|Ing3|71777|inhibitor of growth family, member 3	AK131993|Ing3|71777|inhibitor of growth family, member 3	BC018342|Ing3|71777|inhibitor of growth family, member 3
mm9_v1_chr10_+_43198945_43198945	0.0892679	AAUGCCC	BC060240|Bend3|331623|BEN domain containing 3	NM_199028|Bend3|331623|BEN domain containing 3
mm9_v1_chr10_-_55948481_55948530	0.0868136	AAUGCCC	NM_001033385|D630037F22Rik|544696|RIKEN cDNA D630037F22 gene
mm9_v1_chr9_-_56265833_56265857	0.0783437	AAUGCCC	AK035440|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene	AK048912|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene	NM_172924|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene
mm9_v1_chr6_-_148894953_148895000	0.0731661	AAUGCCC	BC076599|Fam60a|56306|family with sequence similarity 60, member A	NM_019643|Fam60a|56306|family with sequence similarity 60, member A	AK166569|Fam60a|56306|family with sequence similarity 60, member A	AK145384|Fam60a|56306|family with sequence similarity 60, member A
mm9_v1_chrX_-_101609169_101609195	0.0676669	AAUGCCC	AK151967|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152535|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152816|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152946|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK084853|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK040069|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	BC151037|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	NM_009592|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	BC080769|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm9_v1_chr6_-_116143380_116143517	0.0654779	AAUGCCC	AK173022|Tmcc1|330401|transmembrane and coiled coil domains 1	NM_177412|Tmcc1|330401|transmembrane and coiled coil domains 1
mm9_v1_chr15_+_84062273_84062503	0.0591932	AAUGCCC	BC158113|Parvb|170736|parvin, beta	BC138747|Parvb|170736|parvin, beta	BC138748|Parvb|170736|parvin, beta	NM_133167|Parvb|170736|parvin, beta	AK143614|Parvb|170736|parvin, beta	AF237770|Parvb|170736|parvin, beta	AK147758|Parvb|170736|parvin, beta
mm9_v1_chr15_+_98462650_98462843	0.0476163	AAUGCCC	NM_001044741|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit
mm9_v1_chr16_+_94085504_94085555	0.038935	AAUGCCC	NM_011377|Sim2|20465|single-minded homolog 2 (Drosophila)	D63383|Sim2|20465|single-minded homolog 2 (Drosophila)	D64135|Sim2|20465|single-minded homolog 2 (Drosophila)
mm9_v1_chr12_-_57637894_57637894	0.0153077	AAUGCCC	BC057607|Nkx2-1|21869|NK2 homeobox 1	NM_009385|Nkx2-1|21869|NK2 homeobox 1
mm9_v1_chr8_+_23970006_23970020	0.0149573	AAUGCCC	AK028058|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK082463|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	NM_001081149|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK039615|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK036885|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK054322|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK132474|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK143408|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3
mm9_v1_chr2_+_130732201_130732231	0.00996799	AAUGCCC	AK155069|Atrn|11990|attractin	AF116897|Atrn|11990|attractin	NM_009730|Atrn|11990|attractin
