mm9_v1_chr7_+_121558695_121558794	6.26329	ACAGUAU	NM_011055|Pde3b|18576|phosphodiesterase 3B, cGMP-inhibited	AF547435|Pde3b|18576|phosphodiesterase 3B, cGMP-inhibited
mm9_v1_chr15_+_7090525_7090548	4.35038	ACAGUAU	D17444|Lifr|16880|leukemia inhibitory factor receptor	D26177|Lifr|16880|leukemia inhibitory factor receptor	S73495|Lifr|16880|leukemia inhibitory factor receptor	S73496|Lifr|16880|leukemia inhibitory factor receptor	NM_013584|Lifr|16880|leukemia inhibitory factor receptor	BC031929|Lifr|16880|leukemia inhibitory factor receptor
mm9_v1_chr12_+_82127791_82127817	3.91907	ACAGUAU	AK040931|Smoc1|64075|SPARC related modular calcium binding 1	NM_001146217|Smoc1|64075|SPARC related modular calcium binding 1	NM_022316|Smoc1|64075|SPARC related modular calcium binding 1	BC031804|Smoc1|64075|SPARC related modular calcium binding 1	AF070470|Smoc1|64075|SPARC related modular calcium binding 1
mm9_v1_chr1_-_82287990_82288082	3.87589	ACAGUAU	AK045317|Irs1|16367|insulin receptor substrate 1	NM_010570|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr15_+_68758773_68758908	3.56224	ACAGUAU	AF079763|Khdrbs3|13992|KH domain containing, RNA binding, signal transduction associated 3	AF099092|Khdrbs3|13992|KH domain containing, RNA binding, signal transduction associated 3	NM_010158|Khdrbs3|13992|KH domain containing, RNA binding, signal transduction associated 3	AK014353|Khdrbs3|13992|KH domain containing, RNA binding, signal transduction associated 3	BC057577|Khdrbs3|13992|KH domain containing, RNA binding, signal transduction associated 3
mm9_v1_chr14_-_17407701_17408109	3.32209	ACAGUAU	AK078471|Rarb|218772|retinoic acid receptor, beta	NM_011243|Rarb|218772|retinoic acid receptor, beta	S92180|Rarb|218772|retinoic acid receptor, beta	S56660|Rarb|218772|retinoic acid receptor, beta	AK054178|Rarb|218772|retinoic acid receptor, beta	BC076597|Rarb|218772|retinoic acid receptor, beta	X56573|Rarb|218772|retinoic acid receptor, beta
mm9_v1_chr15_+_85566122_85566257	3.25834	ACAGUAU	AK035676|Ppara|19013|peroxisome proliferator activated receptor alpha	NM_011144|Ppara|19013|peroxisome proliferator activated receptor alpha	BC016892|Ppara|19013|peroxisome proliferator activated receptor alpha
mm9_v1_chr3_+_52072251_52072295	3.14137	ACAGUAU	AK154041|Foxo1|56458|forkhead box O1	NM_019739|Foxo1|56458|forkhead box O1	AJ252157|Foxo1|56458|forkhead box O1
mm9_v1_chr15_+_85565935_85565993	3.03123	ACAGUAU	AK081709|Ppara|19013|peroxisome proliferator activated receptor alpha	NM_001113418|Ppara|19013|peroxisome proliferator activated receptor alpha
mm9_v1_chr1_-_166388431_166388540	2.94601	ACAGUAU	AK010677|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	NM_009721|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr13_-_115248924_115248982	2.94413	ACAGUAU	AK083556|Fst|14313|follistatin	NM_008046|Fst|14313|follistatin	BC144926|Fst|14313|follistatin	BC145945|Fst|14313|follistatin
mm9_v1_chr4_-_131631226_131631229	2.8752	ACAGUAU	NM_001128607|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr2_-_115890247_115890356	2.83659	ACAGUAU	AK158513|Meis2|17536|Meis homeobox 2	AK158839|Meis2|17536|Meis homeobox 2	NM_001159569|Meis2|17536|Meis homeobox 2	NM_001159570|Meis2|17536|Meis homeobox 2
mm9_v1_chr8_-_105308910_105309020	2.75859	ACAGUAU	BC046314|Cdh11|12552|cadherin 11	D31963|Cdh11|12552|cadherin 11	AK049652|Cdh11|12552|cadherin 11	AK045023|Cdh11|12552|cadherin 11	NM_009866|Cdh11|12552|cadherin 11
mm9_v1_chr2_-_115890747_115890848	2.75076	ACAGUAU	U68383|Meis2|17536|Meis homeobox 2	U68384|Meis2|17536|Meis homeobox 2	AJ000504|Meis2|17536|Meis homeobox 2	AJ000505|Meis2|17536|Meis homeobox 2	AJ000506|Meis2|17536|Meis homeobox 2	AJ000507|Meis2|17536|Meis homeobox 2	AK146633|Meis2|17536|Meis homeobox 2	NM_001136072|Meis2|17536|Meis homeobox 2	NM_001159567|Meis2|17536|Meis homeobox 2	NM_001159568|Meis2|17536|Meis homeobox 2	NM_010825|Meis2|17536|Meis homeobox 2	BC017375|Meis2|17536|Meis homeobox 2
mm9_v1_chr5_+_15440508_15440728	2.71564	ACAGUAU	AK164580|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110843|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110844|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110845|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110846|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_009784|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	AK084101|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73483|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73484|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73485|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73486|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73487|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	BC115871|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	AK052898|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm9_v1_chr4_-_131628011_131628011	2.67308	ACAGUAU	L00919|Epb4.1|269587|erythrocyte protein band 4.1	NM_183428|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr13_+_109444370_109444370	2.59298	ACAGUAU	AF536978|Pde4d|238871|phosphodiesterase 4D, cAMP specific	NM_011056|Pde4d|238871|phosphodiesterase 4D, cAMP specific
mm9_v1_chr4_+_132567420_132567463	2.55096	ACAGUAU	BC042621|Ahdc1|230793|AT hook, DNA binding motif, containing 1	NM_146155|Ahdc1|230793|AT hook, DNA binding motif, containing 1
mm9_v1_chr18_+_64500017_64500040	2.48777	ACAGUAU	AY242995|Onecut2|225631|one cut domain, family member 2	NM_194268|Onecut2|225631|one cut domain, family member 2	BC100750|Onecut2|225631|one cut domain, family member 2	BC100755|Onecut2|225631|one cut domain, family member 2	BC103668|Onecut2|225631|one cut domain, family member 2
mm9_v1_chr1_-_31006599_31006606	2.32659	ACAGUAU	AK148288|Ptp4a1|19243|protein tyrosine phosphatase 4a1	NM_011200|Ptp4a1|19243|protein tyrosine phosphatase 4a1
mm9_v1_chr10_-_94879435_94879509	2.31413	ACAGUAU	AK160537|Socs2|216233|suppressor of cytokine signaling 2	AK162591|Socs2|216233|suppressor of cytokine signaling 2	BC106153|Socs2|216233|suppressor of cytokine signaling 2	NM_007706|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr10_-_94878845_94878845	2.28209	ACAGUAU	NM_001168655|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr15_+_10106992_10106998	2.28107	ACAGUAU	AK054551|Prlr|19116|prolactin receptor	NM_011169|Prlr|19116|prolactin receptor	AK042147|Prlr|19116|prolactin receptor
mm9_v1_chr11_-_5344795_5344912	2.25994	ACAGUAU	AK163639|Znrf3|407821|zinc and ring finger 3	NM_001080924|Znrf3|407821|zinc and ring finger 3
mm9_v1_chr4_-_131604821_131605088	2.24814	ACAGUAU	BC079875|Epb4.1|269587|erythrocyte protein band 4.1	AK220462|Epb4.1|269587|erythrocyte protein band 4.1	NM_001128606|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr10_-_94877824_94877916	2.23643	ACAGUAU	U88327|Socs2|216233|suppressor of cytokine signaling 2	NM_001168657|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr10_-_94878117_94878117	2.21465	ACAGUAU	NM_001168656|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr13_-_55671276_55671335	2.19279	ACAGUAU	AK173303|Fam193b|212483|family with sequence similarity 193, member B	BC025483|Fam193b|212483|family with sequence similarity 193, member B	NM_001162881|Fam193b|212483|family with sequence similarity 193, member B
mm9_v1_chr19_-_37281762_37281782	2.18925	ACAGUAU	BC128377|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	AY313774|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	NM_198300|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3
mm9_v1_chr14_+_34736772_34736788	2.17949	ACAGUAU	BC058358|Gdf10|14560|growth differentiation factor 10	NM_145741|Gdf10|14560|growth differentiation factor 10	AK042684|Gdf10|14560|growth differentiation factor 10
mm9_v1_chr6_-_21802514_21802514	2.15754	ACAGUAU	AK050737|Tspan12|269831|tetraspanin 12	NM_173007|Tspan12|269831|tetraspanin 12
mm9_v1_chr18_+_35989376_35989483	2.15078	ACAGUAU	AK005364|Cxxc5|67393|CXXC finger 5	BC089314|Cxxc5|67393|CXXC finger 5	NM_133687|Cxxc5|67393|CXXC finger 5
mm9_v1_chr16_-_11254052_11254466	2.12305	ACAGUAU	BC031640|Gspt1|14852|G1 to S phase transition 1	AK030760|Gspt1|14852|G1 to S phase transition 1	AK032059|Gspt1|14852|G1 to S phase transition 1	AK148603|Gspt1|14852|G1 to S phase transition 1	AK134128|Gspt1|14852|G1 to S phase transition 1	AK037929|Gspt1|14852|G1 to S phase transition 1	AK166626|Gspt1|14852|G1 to S phase transition 1	NM_001130008|Gspt1|14852|G1 to S phase transition 1	NM_146066|Gspt1|14852|G1 to S phase transition 1
mm9_v1_chr6_-_148894953_148895000	2.1015	ACAGUAU	BC076599|Fam60a|56306|family with sequence similarity 60, member A	NM_019643|Fam60a|56306|family with sequence similarity 60, member A	AK166569|Fam60a|56306|family with sequence similarity 60, member A	AK145384|Fam60a|56306|family with sequence similarity 60, member A
mm9_v1_chr6_+_117118552_117118673	2.07694	ACAGUAU	NM_001012477|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	NM_013655|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	NM_021704|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK157553|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK045092|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK075596|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D43804|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D43805|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	L12029|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	L12030|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC046827|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC006640|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC020297|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC029335|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D21072|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	S74318|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	CT010389|Cxcl12|20315|chemokine (C-X-C motif) ligand 12
mm9_v1_chr15_+_80629020_80629144	1.98915	ACAGUAU	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr7_-_116760660_116760660	1.89363	ACAGUAU	NM_001001326|St5|76954|suppression of tumorigenicity 5	NM_029811|St5|76954|suppression of tumorigenicity 5
mm9_v1_chr18_+_5591869_5591894	1.89197	ACAGUAU	AK014114|Zeb1|21417|zinc finger E-box binding homeobox 1	U26259|Zeb1|21417|zinc finger E-box binding homeobox 1	BC139768|Zeb1|21417|zinc finger E-box binding homeobox 1	BC139769|Zeb1|21417|zinc finger E-box binding homeobox 1	D76432|Zeb1|21417|zinc finger E-box binding homeobox 1	NM_011546|Zeb1|21417|zinc finger E-box binding homeobox 1	BC090987|Zeb1|21417|zinc finger E-box binding homeobox 1	AK135371|Zeb1|21417|zinc finger E-box binding homeobox 1
mm9_v1_chr9_-_14419410_14419443	1.88924	ACAGUAU	NM_001081395|Amotl1|75723|angiomotin-like 1
mm9_v1_chr2_+_121692687_121692705	1.87945	ACAGUAU	BC064446|Casc4|319996|cancer susceptibility candidate 4	NM_177054|Casc4|319996|cancer susceptibility candidate 4	NM_199038|Casc4|319996|cancer susceptibility candidate 4
mm9_v1_chr3_+_82830071_82830096	1.87052	ACAGUAU	NM_001111048|Fga|14161|fibrinogen alpha chain	NM_010196|Fga|14161|fibrinogen alpha chain	AK146828|Fga|14161|fibrinogen alpha chain	BC005467|Fga|14161|fibrinogen alpha chain	BC024778|Fga|14161|fibrinogen alpha chain
mm9_v1_chr2_-_154900188_154900232	1.83301	ACAGUAU	AK151097|Ahcy|269378|S-adenosylhomocysteine hydrolase	AK153421|Ahcy|269378|S-adenosylhomocysteine hydrolase	AK154302|Ahcy|269378|S-adenosylhomocysteine hydrolase	AK169331|Ahcy|269378|S-adenosylhomocysteine hydrolase	NM_016661|Ahcy|269378|S-adenosylhomocysteine hydrolase
mm9_v1_chr4_+_32504409_32504501	1.81185	ACAGUAU	NM_001109661|Bach2|12014|BTB and CNC homology 2	BC131642|Bach2|12014|BTB and CNC homology 2
mm9_v1_chr19_+_27291507_27291624	1.81017	ACAGUAU	AK044683|Vldlr|22359|very low density lipoprotein receptor	AK076172|Vldlr|22359|very low density lipoprotein receptor	NM_001161420|Vldlr|22359|very low density lipoprotein receptor	NM_013703|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr2_-_76820599_76820607	1.75357	ACAGUAU	AK084718|Ttn|22138|titin	AK052859|Ttn|22138|titin	AK084709|Ttn|22138|titin	AK085811|Ttn|22138|titin	AK085832|Ttn|22138|titin	NM_011652|Ttn|22138|titin	NM_028004|Ttn|22138|titin
mm9_v1_chr8_+_24521967_24522003	1.71943	ACAGUAU	AK088868|Sfrp1|20377|secreted frizzled-related protein 1	NM_013834|Sfrp1|20377|secreted frizzled-related protein 1	BC094662|Sfrp1|20377|secreted frizzled-related protein 1	U88566|Sfrp1|20377|secreted frizzled-related protein 1	BC024495|Sfrp1|20377|secreted frizzled-related protein 1
mm9_v1_chr18_-_23197156_23197163	1.69406	ACAGUAU	BC056377|Nol4|319211|nucleolar protein 4	NM_001161483|Nol4|319211|nucleolar protein 4
mm9_v1_chr10_+_85763156_85763226	1.69064	ACAGUAU	NM_011595|Timp3|21859|tissue inhibitor of metalloproteinase 3
mm9_v1_chr11_+_72420705_72421072	1.6844	ACAGUAU	NM_025985|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	BC065083|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK083029|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK012539|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK013902|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK167472|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK197264|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)
mm9_v1_chr10_-_62342761_62342761	1.62015	ACAGUAU	GU079948|Tet1|52463|tet oncogene 1	NM_027384|Tet1|52463|tet oncogene 1
mm9_v1_chr14_+_20570444_20570550	1.60564	ACAGUAU	NM_008695|Nid2|18074|nidogen 2	BC054746|Nid2|18074|nidogen 2	AK045306|Nid2|18074|nidogen 2	AK051664|Nid2|18074|nidogen 2	AK052839|Nid2|18074|nidogen 2	AK083629|Nid2|18074|nidogen 2	AK140832|Nid2|18074|nidogen 2	AK164258|Nid2|18074|nidogen 2	AY074820|Nid2|18074|nidogen 2	BC050224|Nid2|18074|nidogen 2	AB017202|Nid2|18074|nidogen 2	BC057016|Nid2|18074|nidogen 2
mm9_v1_chr1_-_160887568_160887568	1.6054	ACAGUAU	NM_001085376|Pappa2|23850|pappalysin 2
mm9_v1_chr8_-_124175827_124175832	1.56402	ACAGUAU	BC132449|Zcchc14|142682|zinc finger, CCHC domain containing 14	BC137853|Zcchc14|142682|zinc finger, CCHC domain containing 14	AB030244|Zcchc14|142682|zinc finger, CCHC domain containing 14	NM_080855|Zcchc14|142682|zinc finger, CCHC domain containing 14
mm9_v1_chr15_+_80541675_80541764	1.55839	ACAGUAU	AK048628|Tnrc6b|213988|trinucleotide repeat containing 6b	NM_144812|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr9_+_32503600_32503674	1.55248	ACAGUAU	NM_001038642|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	NM_011808|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	BC010588|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	AK168247|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain
mm9_v1_chr2_+_158492468_158492468	1.54504	ACAGUAU	NM_153089|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm9_v1_chr4_+_137418151_137418162	1.5361	ACAGUAU	AK134088|Ece1|230857|endothelin converting enzyme 1	NM_199307|Ece1|230857|endothelin converting enzyme 1
mm9_v1_chr16_+_33380860_33381006	1.52691	ACAGUAU	NM_011749|Zfp148|22661|zinc finger protein 148	AF316548|Zfp148|22661|zinc finger protein 148	X98096|Zfp148|22661|zinc finger protein 148	BC026144|Zfp148|22661|zinc finger protein 148
mm9_v1_chr8_-_49760037_49760043	1.46471	ACAGUAU	BC145284|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)	AB025412|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)	NM_001145937|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)	NM_011857|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)
mm9_v1_chr13_-_55672471_55672500	1.43858	ACAGUAU	AK155237|Fam193b|212483|family with sequence similarity 193, member B	NM_145382|Fam193b|212483|family with sequence similarity 193, member B
mm9_v1_chr6_+_88148657_88148753	1.43321	ACAGUAU	AK154981|Gata2|14461|GATA binding protein 2	NM_008090|Gata2|14461|GATA binding protein 2	AK004551|Gata2|14461|GATA binding protein 2	AK154792|Gata2|14461|GATA binding protein 2	BC107009|Gata2|14461|GATA binding protein 2
mm9_v1_chr1_-_72921438_72921462	1.40685	ACAGUAU	BC057447|Igfbp5|16011|insulin-like growth factor binding protein 5	NM_010518|Igfbp5|16011|insulin-like growth factor binding protein 5	AK142108|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr4_+_133871031_133871138	1.40474	ACAGUAU	NM_001039048|Trim63|433766|tripartite motif-containing 63	BC147663|Trim63|433766|tripartite motif-containing 63	BC147666|Trim63|433766|tripartite motif-containing 63	AK052911|Trim63|433766|tripartite motif-containing 63	DQ229108|Trim63|433766|tripartite motif-containing 63
mm9_v1_chr8_-_38001686_38001686	1.33767	ACAGUAU	HM008381|Dlc1|50768|deleted in liver cancer 1	NM_001194940|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr15_+_38837839_38837957	1.29263	ACAGUAU	NM_008056|Fzd6|14368|frizzled homolog 6 (Drosophila)	BC026150|Fzd6|14368|frizzled homolog 6 (Drosophila)	AK088399|Fzd6|14368|frizzled homolog 6 (Drosophila)
mm9_v1_chr8_+_12915892_12915957	1.28606	ACAGUAU	NM_178076|Mcf2l|17207|mcf.2 transforming sequence-like	AK082849|Mcf2l|17207|mcf.2 transforming sequence-like	AK048898|Mcf2l|17207|mcf.2 transforming sequence-like	BC058622|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr8_+_12949417_12949485	1.28142	ACAGUAU	NM_001159485|Mcf2l|17207|mcf.2 transforming sequence-like	NM_001159486|Mcf2l|17207|mcf.2 transforming sequence-like	AK170186|Mcf2l|17207|mcf.2 transforming sequence-like	AK170558|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr15_+_38837818_38837834	1.27326	ACAGUAU	NM_001162494|Fzd6|14368|frizzled homolog 6 (Drosophila)
mm9_v1_chr2_+_109757803_109757808	1.26392	ACAGUAU	NM_172671|Lgr4|107515|leucine-rich repeat-containing G protein-coupled receptor 4
mm9_v1_chr8_+_106625524_106625609	1.25575	ACAGUAU	NM_009868|Cdh5|12562|cadherin 5	AK164474|Cdh5|12562|cadherin 5	D63942|Cdh5|12562|cadherin 5	AK167620|Cdh5|12562|cadherin 5	BC054790|Cdh5|12562|cadherin 5	X83930|Cdh5|12562|cadherin 5
mm9_v1_chr8_-_91568060_91568092	1.25427	ACAGUAU	BC062937|Sall1|58198|sal-like 1 (Drosophila)	NM_021390|Sall1|58198|sal-like 1 (Drosophila)
mm9_v1_chr10_+_110943341_110943375	1.23684	ACAGUAU	NM_009344|Phlda1|21664|pleckstrin homology-like domain, family A, member 1	U44088|Phlda1|21664|pleckstrin homology-like domain, family A, member 1
mm9_v1_chr17_+_26551909_26551909	1.23054	ACAGUAU	DQ839448|Neurl1b|240055|neuralized homolog 1b (Drosophila)	GQ414760|Neurl1b|240055|neuralized homolog 1b (Drosophila)	NM_001081656|Neurl1b|240055|neuralized homolog 1b (Drosophila)
mm9_v1_chr6_+_38383918_38383949	1.2303	ACAGUAU	NM_177185|Ubn2|320538|ubinuclein 2	AK013733|Ubn2|320538|ubinuclein 2	BC051458|Ubn2|320538|ubinuclein 2
mm9_v1_chr9_-_94438499_94438504	1.22478	ACAGUAU	NM_001033145|1190002N15Rik|68861|RIKEN cDNA 1190002N15 gene
mm9_v1_chr18_+_58038278_58038331	1.16635	ACAGUAU	NM_009194|Slc12a2|20496|solute carrier family 12, member 2	U13174|Slc12a2|20496|solute carrier family 12, member 2
mm9_v1_chr4_-_53172748_53172872	1.14743	ACAGUAU	AK051920|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1	NM_013454|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1
mm9_v1_chr18_+_10325174_10325177	1.12988	ACAGUAU	AK142556|Greb1l|381157|growth regulation by estrogen in breast cancer-like	NM_001083628|Greb1l|381157|growth regulation by estrogen in breast cancer-like
mm9_v1_chr18_+_69505374_69505487	1.11738	ACAGUAU	NM_001083967|Tcf4|21413|transcription factor 4	AK081012|Tcf4|21413|transcription factor 4	AK145285|Tcf4|21413|transcription factor 4	AK028748|Tcf4|21413|transcription factor 4	S75870|Tcf4|21413|transcription factor 4
mm9_v1_chr2_+_181531011_181531011	1.09931	ACAGUAU	AF004294|Myt1|17932|myelin transcription factor 1	NM_001171680|Myt1|17932|myelin transcription factor 1
mm9_v1_chr8_-_37796104_37796107	1.09727	ACAGUAU	AK147539|Dlc1|50768|deleted in liver cancer 1	NM_001194941|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr15_+_99223377_99223451	1.091	ACAGUAU	NM_001171034|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	NM_001171036|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	NM_026669|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK019865|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK050299|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK088030|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK088683|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK139901|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK159380|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK166935|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK036782|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK036994|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK049604|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK050323|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	BC005588|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6
mm9_v1_chr3_+_31801595_31801757	1.07998	ACAGUAU	AK012400|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	BC046227|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	BC058957|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	NM_028231|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm9_v1_chr6_-_52184909_52184937	1.07505	ACAGUAU	BC050839|Hoxa10|15395|homeobox A10	L08757|Hoxa10|15395|homeobox A10	NM_008263|Hoxa10|15395|homeobox A10
mm9_v1_chr19_-_47538898_47538933	1.0623	ACAGUAU	AJ007012|Sh3pxd2a|14218|SH3 and PX domains 2A	NM_001164717|Sh3pxd2a|14218|SH3 and PX domains 2A	NM_008018|Sh3pxd2a|14218|SH3 and PX domains 2A
mm9_v1_chr9_-_30729990_30730036	1.05059	ACAGUAU	BC094677|Adamts15|235130|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15	NM_001024139|Adamts15|235130|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15
mm9_v1_chr7_+_37483093_37483136	1.04316	ACAGUAU	AY063491|Tshz3|243931|teashirt zinc finger family member 3	NM_172298|Tshz3|243931|teashirt zinc finger family member 3
mm9_v1_chr8_+_109674517_109674597	1.03522	ACAGUAU	BC054749|Cyb5b|66427|cytochrome b5 type B	BC062980|Cyb5b|66427|cytochrome b5 type B	AK003333|Cyb5b|66427|cytochrome b5 type B	AK088970|Cyb5b|66427|cytochrome b5 type B	AK165543|Cyb5b|66427|cytochrome b5 type B	AK052810|Cyb5b|66427|cytochrome b5 type B	NM_025558|Cyb5b|66427|cytochrome b5 type B	AK019263|Cyb5b|66427|cytochrome b5 type B	BC048147|Cyb5b|66427|cytochrome b5 type B	AK003815|Cyb5b|66427|cytochrome b5 type B	AK168422|Cyb5b|66427|cytochrome b5 type B	AK166544|Cyb5b|66427|cytochrome b5 type B	BC046810|Cyb5b|66427|cytochrome b5 type B	BC046479|Cyb5b|66427|cytochrome b5 type B	BC058812|Cyb5b|66427|cytochrome b5 type B
mm9_v1_chr10_+_61143056_61143106	1.01126	ACAGUAU	AK157843|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	AK168175|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	AK159239|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	NM_009120|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	BC005549|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	L20294|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)
mm9_v1_chr7_-_123182257_123182257	1.0036	ACAGUAU	AK048143|Sox6|20679|SRY-box containing gene 6	NM_001025559|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr4_+_97248556_97248685	0.991817	ACAGUAU	D90173|Nfia|18027|nuclear factor I/A	AK048696|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene	AK139357|Nfia|18027|nuclear factor I/A	NM_001122952|Nfia|18027|nuclear factor I/A	AK051361|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene
mm9_v1_chr8_+_23587151_23587348	0.990863	ACAGUAU	NM_011394|Slc20a2|20516|solute carrier family 20, member 2	AK170985|Slc20a2|20516|solute carrier family 20, member 2	BC046510|Slc20a2|20516|solute carrier family 20, member 2	AK157206|Slc20a2|20516|solute carrier family 20, member 2	AK087507|Slc20a2|20516|solute carrier family 20, member 2
mm9_v1_chr1_+_189821727_189821874	0.989425	ACAGUAU	BC082324|Esrrg|26381|estrogen-related receptor gamma	NM_011935|Esrrg|26381|estrogen-related receptor gamma	AB093266|Esrrg|26381|estrogen-related receptor gamma	AF117254|Esrrg|26381|estrogen-related receptor gamma	AB221580|Esrrg|26381|estrogen-related receptor gamma
mm9_v1_chr16_+_11066390_11066492	0.986458	ACAGUAU	NM_009223|Snn|20621|stannin	BC006961|Snn|20621|stannin	AK149685|Snn|20621|stannin	BC063027|Snn|20621|stannin	BC017685|Snn|20621|stannin
mm9_v1_chrX_+_80194208_80194241	0.968343	ACAGUAU	AK052856|Dmd|13405|dystrophin, muscular dystrophy	NM_007868|Dmd|13405|dystrophin, muscular dystrophy	M68859|Dmd|13405|dystrophin, muscular dystrophy
mm9_v1_chr2_+_158492854_158492905	0.944825	ACAGUAU	AK044453|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	NM_001159662|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC054764|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC057542|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AF423761|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AK042123|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm9_v1_chr2_-_12223518_12223578	0.94119	ACAGUAU	BC137793|Itga8|241226|integrin alpha 8	AK135193|Itga8|241226|integrin alpha 8	AK044910|Itga8|241226|integrin alpha 8	NM_001001309|Itga8|241226|integrin alpha 8
mm9_v1_chr2_-_156904966_156905000	0.933152	ACAGUAU	AK147227|9830001H06Rik|320706|RIKEN cDNA 9830001H06 gene	NM_001164663|9830001H06Rik|320706|RIKEN cDNA 9830001H06 gene
mm9_v1_chr2_-_37278415_37278506	0.931997	ACAGUAU	BC117951|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	BC117952|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	AK053071|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	NM_001100591|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2
mm9_v1_chr4_+_97444312_97444317	0.928961	ACAGUAU	NM_001122953|Nfia|18027|nuclear factor I/A	NM_010905|Nfia|18027|nuclear factor I/A
mm9_v1_chr3_+_5218545_5218658	0.922707	ACAGUAU	AK084213|Zfhx4|80892|zinc finger homeodomain 4	BC061199|Zfhx4|80892|zinc finger homeodomain 4	NM_030708|Zfhx4|80892|zinc finger homeodomain 4	AK044540|Zfhx4|80892|zinc finger homeodomain 4
mm9_v1_chr5_-_38215607_38215829	0.922253	ACAGUAU	AF308572|Msx1|17701|homeobox, msh-like 1	X14759|Msx1|17701|homeobox, msh-like 1	X59251|Msx1|17701|homeobox, msh-like 1	BC016426|Msx1|17701|homeobox, msh-like 1	AK077524|Msx1|17701|homeobox, msh-like 1	AK145726|Msx1|17701|homeobox, msh-like 1	AK078600|Msx1|17701|homeobox, msh-like 1	NM_010835|Msx1|17701|homeobox, msh-like 1
mm9_v1_chr5_+_144861227_144861325	0.920901	ACAGUAU	AK158724|Lmtk2|231876|lemur tyrosine kinase 2	NM_001081109|Lmtk2|231876|lemur tyrosine kinase 2
mm9_v1_chr3_-_126646303_126646303	0.89769	ACAGUAU	BC043123|Ank2|109676|ankyrin 2, brain	NM_001034168|Ank2|109676|ankyrin 2, brain
mm9_v1_chr10_+_43198945_43198945	0.885323	ACAGUAU	BC060240|Bend3|331623|BEN domain containing 3	NM_199028|Bend3|331623|BEN domain containing 3
mm9_v1_chr7_-_123138599_123138599	0.880004	ACAGUAU	NM_011445|Sox6|20679|SRY-box containing gene 6	U32614|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr19_-_34952377_34952406	0.877327	ACAGUAU	AF200357|Pank1|75735|pantothenate kinase 1	AK050222|Pank1|75735|pantothenate kinase 1	NM_023792|Pank1|75735|pantothenate kinase 1
mm9_v1_chr5_+_67137054_67137078	0.874663	ACAGUAU	NM_001001980|Limch1|77569|LIM and calponin homology domains 1
mm9_v1_chr2_+_155207581_155207616	0.857251	ACAGUAU	AJ297793|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK146589|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	BC043086|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	NM_178111|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK149495|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr4_-_82151180_82151288	0.853096	ACAGUAU	AK034793|Nfib|18028|nuclear factor I/B	Y07686|Nfib|18028|nuclear factor I/B	AK146480|Nfib|18028|nuclear factor I/B	NM_001113209|Nfib|18028|nuclear factor I/B	NM_001113210|Nfib|18028|nuclear factor I/B	NM_008687|Nfib|18028|nuclear factor I/B	AK034261|Nfib|18028|nuclear factor I/B	AK087480|Nfib|18028|nuclear factor I/B	AK084941|Nfib|18028|nuclear factor I/B
mm9_v1_chr18_-_58369579_58369752	0.849942	ACAGUAU	AK132163|Fbn2|14119|fibrillin 2	NM_010181|Fbn2|14119|fibrillin 2
mm9_v1_chr5_+_89316245_89316323	0.843201	ACAGUAU	NM_001136260|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	NM_001197147|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	NM_018760|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	HQ204220|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	AF020195|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	BC129863|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	BC148292|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	BC129864|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4
mm9_v1_chr7_-_88599560_88599643	0.813313	ACAGUAU	BC125476|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	BC144948|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	NM_007755|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	Y08260|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	AK136088|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1
mm9_v1_chr11_-_61393108_61393198	0.807378	ACAGUAU	AK195274|Epn2|13855|epsin 2	AK139793|Epn2|13855|epsin 2	BC039138|Epn2|13855|epsin 2	NM_010148|Epn2|13855|epsin 2	AK036331|Epn2|13855|epsin 2	AK173093|Epn2|13855|epsin 2	AK139234|Epn2|13855|epsin 2	AK160782|Epn2|13855|epsin 2
mm9_v1_chr10_+_77068939_77069034	0.80479	ACAGUAU	AK012742|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK150063|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK150200|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK162035|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK160169|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK013019|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK148306|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK168988|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	NM_019929|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK167207|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AF063847|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	BC115488|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	BC115489|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)
mm9_v1_chr17_+_31701700_31701809	0.802793	ACAGUAU	NM_016670|Pknox1|18771|Pbx/knotted 1 homeobox	AF061270|Pknox1|18771|Pbx/knotted 1 homeobox	AK134000|Pknox1|18771|Pbx/knotted 1 homeobox
mm9_v1_chr19_-_19075535_19075606	0.800755	ACAGUAU	DQ779924|Rorb|225998|RAR-related orphan receptor beta	BC024768|Rorb|225998|RAR-related orphan receptor beta	AK044421|Rorb|225998|RAR-related orphan receptor beta	BC024842|Rorb|225998|RAR-related orphan receptor beta	NM_146095|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr11_+_80196766_80196898	0.791121	ACAGUAU	AK087885|Zfp207|22680|zinc finger protein 207	NM_001130169|Zfp207|22680|zinc finger protein 207	NM_001130170|Zfp207|22680|zinc finger protein 207	NM_001130171|Zfp207|22680|zinc finger protein 207	NM_011751|Zfp207|22680|zinc finger protein 207	AK140139|Zfp207|22680|zinc finger protein 207	AK146787|Zfp207|22680|zinc finger protein 207	AK159683|Zfp207|22680|zinc finger protein 207	AK033497|Zfp207|22680|zinc finger protein 207	BC003715|Zfp207|22680|zinc finger protein 207	AB013357|Zfp207|22680|zinc finger protein 207	AB032196|Zfp207|22680|zinc finger protein 207
mm9_v1_chr11_-_118947424_118947559	0.78353	ACAGUAU	BC117801|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	BC117802|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	U63387|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	BC045162|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	BC018304|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	NM_007625|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)
mm9_v1_chr16_-_13668230_13668281	0.782179	ACAGUAU	AK041044|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK160611|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	BC021899|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK049829|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK045181|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK004572|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	NM_028761|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)
mm9_v1_chr4_+_11083585_11083598	0.782002	ACAGUAU	AJ131776|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AY034611|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AY034612|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	NM_021897|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AK054214|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AK142321|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1
mm9_v1_chr7_-_123174560_123174560	0.78092	ACAGUAU	AK030713|Sox6|20679|SRY-box containing gene 6	NM_001025560|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr4_+_54960816_54960816	0.778714	ACAGUAU	NM_172867|Zfp462|242466|zinc finger protein 462
mm9_v1_chr13_-_46060325_46060353	0.776179	ACAGUAU	BC058178|Atxn1|20238|ataxin 1	AK048268|Atxn1|20238|ataxin 1	NM_009124|Atxn1|20238|ataxin 1	AK169931|Atxn1|20238|ataxin 1
mm9_v1_chr18_+_69504145_69504185	0.771592	ACAGUAU	AK051958|Tcf4|21413|transcription factor 4	NM_013685|Tcf4|21413|transcription factor 4	U16322|Tcf4|21413|transcription factor 4
mm9_v1_chr4_+_130219255_130219279	0.77142	ACAGUAU	AK162742|Pum1|80912|pumilio 1 (Drosophila)	NM_001159603|Pum1|80912|pumilio 1 (Drosophila)	NM_001159604|Pum1|80912|pumilio 1 (Drosophila)	NM_001159605|Pum1|80912|pumilio 1 (Drosophila)	NM_001159606|Pum1|80912|pumilio 1 (Drosophila)	NM_030722|Pum1|80912|pumilio 1 (Drosophila)	AK141921|Pum1|80912|pumilio 1 (Drosophila)
mm9_v1_chr11_+_53164267_53164268	0.757513	ACAGUAU	NM_033565|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr15_+_99223622_99223695	0.754582	ACAGUAU	NM_001171035|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6
mm9_v1_chr19_+_3851772_3851838	0.747882	ACAGUAU	AK005057|Chka|12660|choline kinase alpha	NM_001025566|Chka|12660|choline kinase alpha	NM_013490|Chka|12660|choline kinase alpha	AK014174|Chka|12660|choline kinase alpha	BC060218|Chka|12660|choline kinase alpha	AK052056|Chka|12660|choline kinase alpha	AK053818|Chka|12660|choline kinase alpha	AK166465|Chka|12660|choline kinase alpha	AK166641|Chka|12660|choline kinase alpha
mm9_v1_chr7_-_87260156_87260248	0.740162	ACAGUAU	AK213553|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	AK145753|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	AF212319|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	AK088110|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	AK146564|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	AK161640|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	BC060030|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	AK169395|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	NM_173011|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial
mm9_v1_chr8_-_37676995_37677010	0.733179	ACAGUAU	AK162413|Dlc1|50768|deleted in liver cancer 1	NM_015802|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr4_-_128483355_128483429	0.728823	ACAGUAU	NM_001081098|Zfp362|230761|zinc finger protein 362
mm9_v1_chr14_+_22319075_22319102	0.720276	ACAGUAU	AK052307|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4	NM_017479|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4	AF222800|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4
mm9_v1_chrX_+_135448968_135449043	0.718057	ACAGUAU	NM_013724|Nrk|27206|Nik related kinase	AK041377|Nrk|27206|Nik related kinase	BC068311|Nrk|27206|Nik related kinase	AB020741|Nrk|27206|Nik related kinase
mm9_v1_chr2_+_69735301_69735369	0.707657	ACAGUAU	DQ924536|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3	NM_001081548|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3	NM_177783|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3	AK037622|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3
mm9_v1_chr12_-_52792851_52792915	0.707512	ACAGUAU	BC138055|Strn3|94186|striatin, calmodulin binding protein 3	BC145127|Strn3|94186|striatin, calmodulin binding protein 3	AF307777|Strn3|94186|striatin, calmodulin binding protein 3	EF685152|Strn3|94186|striatin, calmodulin binding protein 3	AK139183|Strn3|94186|striatin, calmodulin binding protein 3	AK140447|Strn3|94186|striatin, calmodulin binding protein 3	AK164967|Strn3|94186|striatin, calmodulin binding protein 3	NM_001172098|Strn3|94186|striatin, calmodulin binding protein 3	NM_052973|Strn3|94186|striatin, calmodulin binding protein 3
mm9_v1_chr5_-_115608153_115608220	0.69197	ACAGUAU	AK031525|Mlec|109154|malectin	AK075940|Mlec|109154|malectin	NM_175403|Mlec|109154|malectin
mm9_v1_chr17_+_86567003_86567165	0.687762	ACAGUAU	AK082438|Prkce|18754|protein kinase C, epsilon	NM_011104|Prkce|18754|protein kinase C, epsilon	AK042994|Prkce|18754|protein kinase C, epsilon
mm9_v1_chr10_-_42894259_42894340	0.686704	ACAGUAU	BC059851|Sobp|109205|sine oculis-binding protein homolog (Drosophila)	NM_175407|Sobp|109205|sine oculis-binding protein homolog (Drosophila)
mm9_v1_chr14_+_19103655_19103798	0.682107	ACAGUAU	NM_023526|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	AK028539|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	AK148040|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	AK010285|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	BC061092|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	AK167340|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	AF225707|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1
mm9_v1_chr4_-_154010868_154010981	0.677672	ACAGUAU	AB078338|Prdm16|70673|PR domain containing 16	AK083829|Prdm16|70673|PR domain containing 16	BC053082|Prdm16|70673|PR domain containing 16	BC059838|Prdm16|70673|PR domain containing 16	NM_001177995|Prdm16|70673|PR domain containing 16	NM_027504|Prdm16|70673|PR domain containing 16
mm9_v1_chr5_-_36022428_36022430	0.663953	ACAGUAU	AK035194|Htra3|78558|HtrA serine peptidase 3	NM_001042615|Htra3|78558|HtrA serine peptidase 3	NM_030127|Htra3|78558|HtrA serine peptidase 3
mm9_v1_chr6_-_148779856_148779997	0.661957	ACAGUAU	BC151036|Ipo8|320727|importin 8	BC151052|Ipo8|320727|importin 8	BC044819|Ipo8|320727|importin 8	BC054373|Ipo8|320727|importin 8	NM_001081113|Ipo8|320727|importin 8
mm9_v1_chr13_-_54789548_54789560	0.661022	ACAGUAU	AK171943|Rnf44|105239|ring finger protein 44	AK172257|Rnf44|105239|ring finger protein 44	NM_001146027|Rnf44|105239|ring finger protein 44
mm9_v1_chr2_+_4802609_4802674	0.659175	ACAGUAU	BC066037|Sephs1|109079|selenophosphate synthetase 1	NM_175400|Sephs1|109079|selenophosphate synthetase 1	BC065165|Sephs1|109079|selenophosphate synthetase 1	AK044971|Sephs1|109079|selenophosphate synthetase 1
mm9_v1_chr3_-_113332817_113333068	0.653342	ACAGUAU	AK173272|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	AK179549|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	AK187884|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	AK084372|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	AK013288|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	AK161974|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	AK163729|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	AK134241|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	BC043695|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	AK161063|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	NM_001038696|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	NM_026043|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3
mm9_v1_chr2_-_102241053_102241195	0.643306	ACAGUAU	AJ278191|Trim44|80985|tripartite motif-containing 44	NM_020267|Trim44|80985|tripartite motif-containing 44
mm9_v1_chr5_-_37087204_37087208	0.641279	ACAGUAU	AK033480|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed	NM_001081232|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed
mm9_v1_chr7_-_73572306_73572369	0.641185	ACAGUAU	BC058277|Aldh1a3|56847|aldehyde dehydrogenase family 1, subfamily A3	AF246711|Aldh1a3|56847|aldehyde dehydrogenase family 1, subfamily A3	AF280404|Aldh1a3|56847|aldehyde dehydrogenase family 1, subfamily A3	AF152359|Aldh1a3|56847|aldehyde dehydrogenase family 1, subfamily A3	AF253409|Aldh1a3|56847|aldehyde dehydrogenase family 1, subfamily A3	AK147006|Aldh1a3|56847|aldehyde dehydrogenase family 1, subfamily A3	NM_053080|Aldh1a3|56847|aldehyde dehydrogenase family 1, subfamily A3
mm9_v1_chr11_-_69419419_69419489	0.626384	ACAGUAU	BC058763|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide	BC034586|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide	AK158321|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide	AK141786|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide	NM_013415|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide
mm9_v1_chr5_+_36235967_36236084	0.624668	ACAGUAU	BC050814|Afap1|70292|actin filament associated protein 1	NM_027373|Afap1|70292|actin filament associated protein 1	AK161385|Afap1|70292|actin filament associated protein 1	AK080756|Afap1|70292|actin filament associated protein 1	AK129483|Afap1|70292|actin filament associated protein 1	AK147706|Afap1|70292|actin filament associated protein 1
mm9_v1_chr7_-_118226515_118226580	0.62315	ACAGUAU	AK150745|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	AK151637|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	AK144309|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	U76112|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	BC057673|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	BC127064|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	NM_001040131|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	NM_013507|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr2_-_58177217_58177217	0.616011	ACAGUAU	AK049089|Acvr1c|269275|activin A receptor, type IC	NM_001033369|Acvr1c|269275|activin A receptor, type IC
mm9_v1_chr2_+_156665812_156665874	0.612709	ACAGUAU	AK029490|Tgif2|228839|TGFB-induced factor homeobox 2	NM_173396|Tgif2|228839|TGFB-induced factor homeobox 2	BC138706|Tgif2|228839|TGFB-induced factor homeobox 2	BC138705|Tgif2|228839|TGFB-induced factor homeobox 2	AK157623|Tgif2|228839|TGFB-induced factor homeobox 2	AK017884|Tgif2|228839|TGFB-induced factor homeobox 2
mm9_v1_chr11_-_18918923_18918971	0.6092	ACAGUAU	AK032947|Meis1|17268|Meis homeobox 1	AK049720|Meis1|17268|Meis homeobox 1	BC023689|Meis1|17268|Meis homeobox 1	AK168684|Meis1|17268|Meis homeobox 1	AK134321|Meis1|17268|Meis homeobox 1	AK140748|Meis1|17268|Meis homeobox 1	NM_001193271|Meis1|17268|Meis homeobox 1	NM_010789|Meis1|17268|Meis homeobox 1
mm9_v1_chr13_+_55311142_55311142	0.604061	ACAGUAU	AK145783|Nsd1|18193|nuclear receptor-binding SET-domain protein 1	NM_008739|Nsd1|18193|nuclear receptor-binding SET-domain protein 1
mm9_v1_chr13_-_54789148_54789168	0.598384	ACAGUAU	AK147349|Rnf44|105239|ring finger protein 44	NM_001146025|Rnf44|105239|ring finger protein 44	NM_001146026|Rnf44|105239|ring finger protein 44	NM_134064|Rnf44|105239|ring finger protein 44
mm9_v1_chr2_-_9800211_9800245	0.597219	ACAGUAU	AK156634|Gata3|14462|GATA binding protein 3	AK053728|Gata3|14462|GATA binding protein 3	AK090089|Gata3|14462|GATA binding protein 3	AK155549|Gata3|14462|GATA binding protein 3	NM_008091|Gata3|14462|GATA binding protein 3
mm9_v1_chr3_+_133903056_133903111	0.594284	ACAGUAU	NM_001004367|Cxxc4|319478|CXXC finger 4
mm9_v1_chrX_+_132804791_132804829	0.593057	ACAGUAU	NM_001110233|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1	NM_001110234|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1	NM_009750|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr10_+_56097078_56097350	0.590521	ACAGUAU	AY427554|Gja1|14609|gap junction protein, alpha 1	AY427555|Gja1|14609|gap junction protein, alpha 1	NM_010288|Gja1|14609|gap junction protein, alpha 1	M63801|Gja1|14609|gap junction protein, alpha 1	AK011459|Gja1|14609|gap junction protein, alpha 1	AK036979|Gja1|14609|gap junction protein, alpha 1	AK145692|Gja1|14609|gap junction protein, alpha 1	AK161997|Gja1|14609|gap junction protein, alpha 1	AK171955|Gja1|14609|gap junction protein, alpha 1	AY427560|Gja1|14609|gap junction protein, alpha 1	BC006894|Gja1|14609|gap junction protein, alpha 1	BC055375|Gja1|14609|gap junction protein, alpha 1	AK029291|Gja1|14609|gap junction protein, alpha 1	AK165986|Gja1|14609|gap junction protein, alpha 1	X61576|Gja1|14609|gap junction protein, alpha 1	AY427556|Gja1|14609|gap junction protein, alpha 1	AY427557|Gja1|14609|gap junction protein, alpha 1	AY427558|Gja1|14609|gap junction protein, alpha 1
mm9_v1_chr12_-_12948513_12948641	0.582603	ACAGUAU	BC005453|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	AK144126|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	AK146913|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	AK146696|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	NM_008709|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
mm9_v1_chr3_-_9610062_9610137	0.582471	ACAGUAU	AF292939|Zfp704|170753|zinc finger protein 704	NM_133218|Zfp704|170753|zinc finger protein 704
mm9_v1_chr19_-_34953810_34953944	0.577759	ACAGUAU	AK017345|Pank1|75735|pantothenate kinase 1	AF347700|Pank1|75735|pantothenate kinase 1	NM_001114339|Pank1|75735|pantothenate kinase 1
mm9_v1_chr9_+_21001148_21001171	0.57168	ACAGUAU	NM_019798|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chr2_+_103252254_103252254	0.5711	ACAGUAU	AK076331|Elf5|13711|E74-like factor 5	NM_001145813|Elf5|13711|E74-like factor 5
mm9_v1_chr12_+_16901671_16901783	0.571097	ACAGUAU	NM_009072|Rock2|19878|Rho-associated coiled-coil containing protein kinase 2
mm9_v1_chr19_+_32832002_32832163	0.568864	ACAGUAU	NM_008960|Pten|19211|phosphatase and tensin homolog	AK164302|Pten|19211|phosphatase and tensin homolog	AK088717|Pten|19211|phosphatase and tensin homolog	AK076980|Pten|19211|phosphatase and tensin homolog
mm9_v1_chr2_-_38640034_38640034	0.567331	ACAGUAU	NM_001159548|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	NM_001159549|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1
mm9_v1_chrX_+_97170927_97171053	0.559575	ACAGUAU	AK028502|Eda|13607|ectodysplasin-A	AF016627|Eda|13607|ectodysplasin-A	AF016628|Eda|13607|ectodysplasin-A	AF016629|Eda|13607|ectodysplasin-A	AF016630|Eda|13607|ectodysplasin-A	DQ168876|Eda|13607|ectodysplasin-A	DQ168877|Eda|13607|ectodysplasin-A	DQ168878|Eda|13607|ectodysplasin-A	DQ168879|Eda|13607|ectodysplasin-A	DQ168880|Eda|13607|ectodysplasin-A	DQ168881|Eda|13607|ectodysplasin-A	NM_001177937|Eda|13607|ectodysplasin-A	NM_001177938|Eda|13607|ectodysplasin-A	NM_001177939|Eda|13607|ectodysplasin-A	NM_001177940|Eda|13607|ectodysplasin-A	NM_001177941|Eda|13607|ectodysplasin-A	NM_001177942|Eda|13607|ectodysplasin-A	NM_001177943|Eda|13607|ectodysplasin-A	NM_001177944|Eda|13607|ectodysplasin-A	NM_010099|Eda|13607|ectodysplasin-A	AF016631|Eda|13607|ectodysplasin-A	AJ243657|Eda|13607|ectodysplasin-A	AK040754|Eda|13607|ectodysplasin-A	AF004435|Eda|13607|ectodysplasin-A	AJ243658|Eda|13607|ectodysplasin-A	AK137551|Eda|13607|ectodysplasin-A	BC125387|Eda|13607|ectodysplasin-A	BC144790|Eda|13607|ectodysplasin-A	BC144791|Eda|13607|ectodysplasin-A
mm9_v1_chr13_-_64376186_64376295	0.557569	ACAGUAU	BC057357|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	BC049794|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	AK161345|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_172587|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chr15_+_66409094_66409201	0.552233	ACAGUAU	AK047044|Phf20l1|239510|PHD finger protein 20-like 1	AK032638|Phf20l1|239510|PHD finger protein 20-like 1	NM_001081409|Phf20l1|239510|PHD finger protein 20-like 1	BC082777|Phf20l1|239510|PHD finger protein 20-like 1	BC052212|Phf20l1|239510|PHD finger protein 20-like 1	BC061492|Phf20l1|239510|PHD finger protein 20-like 1
mm9_v1_chr1_-_58642994_58643176	0.552202	ACAGUAU	AK052638|Fam126b|213056|family with sequence similarity 126, member B	BC068302|Fam126b|213056|family with sequence similarity 126, member B	AK144602|Fam126b|213056|family with sequence similarity 126, member B	BC049806|Fam126b|213056|family with sequence similarity 126, member B	AK168372|Fam126b|213056|family with sequence similarity 126, member B	NM_172513|Fam126b|213056|family with sequence similarity 126, member B
mm9_v1_chr9_+_77602582_77602622	0.548801	ACAGUAU	AK160876|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	BC019374|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	NM_010295|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	U85414|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	U85498|Gclc|14629|glutamate-cysteine ligase, catalytic subunit
mm9_v1_chr2_-_58210162_58210168	0.545884	ACAGUAU	AK142396|Acvr1c|269275|activin A receptor, type IC	NM_001111030|Acvr1c|269275|activin A receptor, type IC
mm9_v1_chr6_+_107479719_107479841	0.539912	ACAGUAU	AK139965|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK139355|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK164849|Lrrn1|16979|leucine rich repeat protein 1, neuronal	D45913|Lrrn1|16979|leucine rich repeat protein 1, neuronal	NM_008516|Lrrn1|16979|leucine rich repeat protein 1, neuronal	BC058701|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK160841|Lrrn1|16979|leucine rich repeat protein 1, neuronal
mm9_v1_chr1_+_193149772_193149878	0.535916	ACAGUAU	AK049641|Tmem206|66950|transmembrane protein 206	AK031270|Tmem206|66950|transmembrane protein 206	AK012107|Tmem206|66950|transmembrane protein 206	AK009526|Tmem206|66950|transmembrane protein 206	AK044482|Tmem206|66950|transmembrane protein 206	NM_025864|Tmem206|66950|transmembrane protein 206	BC027151|Tmem206|66950|transmembrane protein 206
mm9_v1_chr2_+_181498036_181498036	0.527112	ACAGUAU	BC063252|Myt1|17932|myelin transcription factor 1	NM_001171615|Myt1|17932|myelin transcription factor 1
mm9_v1_chr6_+_112409498_112409498	0.52453	ACAGUAU	BC024383|Cav3|12391|caveolin 3	NM_007617|Cav3|12391|caveolin 3
mm9_v1_chr15_+_96117952_96118007	0.520027	ACAGUAU	AK007269|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)	NM_175251|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)
mm9_v1_chr17_-_63230665_63230665	0.519172	ACAGUAU	BC040218|Efna5|13640|ephrin A5	NM_010109|Efna5|13640|ephrin A5	NM_207654|Efna5|13640|ephrin A5
mm9_v1_chr3_-_126701367_126701380	0.516645	ACAGUAU	AK032060|Ank2|109676|ankyrin 2, brain	NM_178655|Ank2|109676|ankyrin 2, brain
mm9_v1_chr9_-_114473486_114473486	0.513989	ACAGUAU	DQ005956|Trim71|636931|tripartite motif-containing 71	NM_001042503|Trim71|636931|tripartite motif-containing 71
mm9_v1_chr5_+_143105467_143105567	0.513	ACAGUAU	AK010881|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	AK043857|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	AK155113|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	BC044894|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	NM_178398|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	AK169051|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	AK172030|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2
mm9_v1_chr16_+_70314331_70314522	0.510175	ACAGUAU	NM_028803|Gbe1|74185|glucan (1,4-alpha-), branching enzyme 1	BC017541|Gbe1|74185|glucan (1,4-alpha-), branching enzyme 1	AK009815|Gbe1|74185|glucan (1,4-alpha-), branching enzyme 1	AK013167|Gbe1|74185|glucan (1,4-alpha-), branching enzyme 1	AK206164|Gbe1|74185|glucan (1,4-alpha-), branching enzyme 1
mm9_v1_chr2_-_24775083_24775154	0.509512	ACAGUAU	AK054555|Ehmt1|77683|euchromatic histone methyltransferase 1	AK052174|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_001012518|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_001109686|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_001109687|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_172545|Ehmt1|77683|euchromatic histone methyltransferase 1	AK084994|Ehmt1|77683|euchromatic histone methyltransferase 1	AK043898|Ehmt1|77683|euchromatic histone methyltransferase 1	AK082062|Ehmt1|77683|euchromatic histone methyltransferase 1	AB205007|Ehmt1|77683|euchromatic histone methyltransferase 1
mm9_v1_chr3_+_88769733_88769733	0.504836	ACAGUAU	NM_138679|Ash1l|192195|ash1 (absent, small, or homeotic)-like (Drosophila)
mm9_v1_chr3_+_135101664_135101764	0.503612	ACAGUAU	AK153111|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK152231|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK153410|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167801|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK151594|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK032885|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167077|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK090099|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC098220|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC024351|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK004001|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK049906|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	NM_025356|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167650|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK159546|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK152541|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK159963|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC057941|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK088448|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
mm9_v1_chr5_+_73872293_73872293	0.502962	ACAGUAU	AK076991|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_001190734|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr13_+_55794441_55794492	0.497834	ACAGUAU	AK088693|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene	BC051430|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene	NM_181278|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene
mm9_v1_chr13_+_48356795_48356817	0.496484	ACAGUAU	NM_031166|Id4|15904|inhibitor of DNA binding 4	X75018|Id4|15904|inhibitor of DNA binding 4	BC145367|Id4|15904|inhibitor of DNA binding 4
mm9_v1_chr2_-_104334610_104334646	0.484479	ACAGUAU	NM_001145824|Hipk3|15259|homeodomain interacting protein kinase 3	NM_010434|Hipk3|15259|homeodomain interacting protein kinase 3
mm9_v1_chr14_+_73952438_73952612	0.483628	ACAGUAU	AK016060|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK081965|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK088801|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK150594|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK152783|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK160130|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	NM_011506|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK153198|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	BC056353|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	BC057605|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK132762|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK160652|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK005273|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit
mm9_v1_chr9_+_20970150_20970317	0.483431	ACAGUAU	AK153657|Pde4a|18577|phosphodiesterase 4A, cAMP specific	NM_183408|Pde4a|18577|phosphodiesterase 4A, cAMP specific	BC139405|Pde4a|18577|phosphodiesterase 4A, cAMP specific	BC139408|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chr4_-_133309484_133309525	0.478165	ACAGUAU	NM_001080819|Arid1a|93760|AT rich interactive domain 1A (SWI-like)
mm9_v1_chr5_-_20387886_20387948	0.477756	ACAGUAU	AK152951|Phtf2|68770|putative homeodomain transcription factor 2	AK035536|Phtf2|68770|putative homeodomain transcription factor 2	AK042382|Phtf2|68770|putative homeodomain transcription factor 2	NM_172992|Phtf2|68770|putative homeodomain transcription factor 2
mm9_v1_chr7_-_77505248_77505478	0.457115	ACAGUAU	X76653|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	U07635|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	AK140125|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	BC042484|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	NM_009697|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2
mm9_v1_chr19_-_41338400_41338559	0.45464	ACAGUAU	AF269151|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK075807|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK220279|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK147380|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK147629|Tm9sf3|107358|transmembrane 9 superfamily member 3	NM_133352|Tm9sf3|107358|transmembrane 9 superfamily member 3
mm9_v1_chr14_-_25065141_25065143	0.453935	ACAGUAU	AK147699|Dlg5|71228|discs, large homolog 5 (Drosophila)	NM_001163513|Dlg5|71228|discs, large homolog 5 (Drosophila)	NM_027726|Dlg5|71228|discs, large homolog 5 (Drosophila)
mm9_v1_chr15_-_102501463_102501513	0.449529	ACAGUAU	BC081437|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK002311|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK012279|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK007747|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK075793|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	NM_026468|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)
mm9_v1_chr15_-_93426312_93426402	0.444075	ACAGUAU	AK153711|Prickle1|106042|prickle homolog 1 (Drosophila)	NM_001033217|Prickle1|106042|prickle homolog 1 (Drosophila)
mm9_v1_chr13_-_43576328_43576357	0.439567	ACAGUAU	AF006465|Ranbp9|56705|RAN binding protein 9	NM_019930|Ranbp9|56705|RAN binding protein 9
mm9_v1_chr12_+_8681486_8681486	0.438691	ACAGUAU	AF315590|Pum2|80913|pumilio 2 (Drosophila)	NM_030723|Pum2|80913|pumilio 2 (Drosophila)
mm9_v1_chr7_+_80520360_80520429	0.437328	ACAGUAU	AK082560|Rgma|244058|RGM domain family, member A	BC059072|Rgma|244058|RGM domain family, member A	NM_177740|Rgma|244058|RGM domain family, member A
mm9_v1_chr5_-_90795190_90795275	0.436066	ACAGUAU	AK031350|Ankrd17|81702|ankyrin repeat domain 17	NM_030886|Ankrd17|81702|ankyrin repeat domain 17	NM_198010|Ankrd17|81702|ankyrin repeat domain 17
mm9_v1_chr5_+_147043131_147043250	0.426855	ACAGUAU	NM_153599|Cdk8|264064|cyclin-dependent kinase 8
mm9_v1_chr5_-_151992724_151992782	0.421651	ACAGUAU	AK148227|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	AK050259|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	NM_001163493|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	NM_146258|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	BC027830|Stard13|243362|StAR-related lipid transfer (START) domain containing 13
mm9_v1_chrX_-_35929359_35929377	0.403889	ACAGUAU	BC004026|Cul4b|72584|cullin 4B	AK032701|Cul4b|72584|cullin 4B	AY330868|Cul4b|72584|cullin 4B	NM_001110142|Cul4b|72584|cullin 4B	NM_028288|Cul4b|72584|cullin 4B
mm9_v1_chr6_-_48036561_48036593	0.398842	ACAGUAU	AK156312|Zfp746|69228|zinc finger protein 746	NM_001163475|Zfp746|69228|zinc finger protein 746
mm9_v1_chrX_-_12339096_12339247	0.396412	ACAGUAU	AB019028|Med14|26896|mediator complex subunit 14	NM_001048208|Med14|26896|mediator complex subunit 14	NM_012005|Med14|26896|mediator complex subunit 14	BC065072|Med14|26896|mediator complex subunit 14
mm9_v1_chr13_+_9275741_9275783	0.395269	ACAGUAU	NM_001081426|Dip2c|208440|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm9_v1_chr4_+_64785207_64785207	0.392056	ACAGUAU	NM_021362|Pappa|18491|pregnancy-associated plasma protein A
mm9_v1_chr8_+_93593971_93593997	0.389706	ACAGUAU	AK155256|Rbl2|19651|retinoblastoma-like 2	NM_011250|Rbl2|19651|retinoblastoma-like 2	AK142172|Rbl2|19651|retinoblastoma-like 2
mm9_v1_chrX_+_155970593_155970627	0.387416	ACAGUAU	AK044001|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene	NM_001033472|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene
mm9_v1_chr2_+_103264218_103264240	0.38403	ACAGUAU	AK145214|Elf5|13711|E74-like factor 5	NM_010125|Elf5|13711|E74-like factor 5	AF049702|Elf5|13711|E74-like factor 5
mm9_v1_chrX_+_104479684_104479684	0.380478	ACAGUAU	NM_001177782|Gpr174|213439|G protein-coupled receptor 174
mm9_v1_chr5_+_73882264_73882364	0.378653	ACAGUAU	NM_001190733|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_178896|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	AK033559|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137627|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137628|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC144794|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC060213|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC108346|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr1_-_180267913_180267920	0.361509	ACAGUAU	AK165844|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	NM_016805|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK089058|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK145682|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK159614|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK167200|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK145499|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK162264|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chrX_-_103124651_103124717	0.357585	ACAGUAU	AK135019|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AF026032|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AK088095|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	NM_009530|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm9_v1_chr5_-_135223110_135223192	0.356593	ACAGUAU	U08210|Eln|13717|elastin	BC051074|Eln|13717|elastin	AK086777|Eln|13717|elastin	AK041860|Eln|13717|elastin	NM_007925|Eln|13717|elastin	AK080277|Eln|13717|elastin	BC051649|Eln|13717|elastin
mm9_v1_chr8_+_97876182_97876236	0.353464	ACAGUAU	BC047278|Mmp15|17388|matrix metallopeptidase 15	NM_008609|Mmp15|17388|matrix metallopeptidase 15
mm9_v1_chr17_-_31992708_31992780	0.350359	ACAGUAU	U11494|Sik1|17691|salt inducible kinase 1	AK141817|Sik1|17691|salt inducible kinase 1	NM_010831|Sik1|17691|salt inducible kinase 1	AK172427|Sik1|17691|salt inducible kinase 1
mm9_v1_chr3_-_141645214_141645214	0.349361	ACAGUAU	BC065143|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B	NM_007560|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B
mm9_v1_chr5_+_19413335_19413335	0.342746	ACAGUAU	AK147530|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_001170745|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_015823|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chr1_-_59293936_59294089	0.340511	ACAGUAU	AK029858|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_001159948|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	BC046828|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	BC031479|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	AB053307|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_028717|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_146109|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)
mm9_v1_chr2_+_31428244_31428356	0.337146	ACAGUAU	NM_001033389|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK166081|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK137035|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK145377|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK166478|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK167671|Fubp3|320267|far upstream element (FUSE) binding protein 3
mm9_v1_chr12_-_14158843_14158897	0.336661	ACAGUAU	BC005488|Fam84a|105005|family with sequence similarity 84, member A	NM_029007|Fam84a|105005|family with sequence similarity 84, member A	AK014625|Fam84a|105005|family with sequence similarity 84, member A
mm9_v1_chr7_-_77511607_77511666	0.335547	ACAGUAU	BC094360|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	NM_183261|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2
mm9_v1_chr5_+_138526303_138526341	0.32937	ACAGUAU	NM_029869|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	NM_133906|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK036807|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK031759|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020355|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK154831|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020039|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK054323|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1
mm9_v1_chr9_+_56924152_56924295	0.328627	ACAGUAU	NM_001110350|Sin3a|20466|transcriptional regulator, SIN3A (yeast)	NM_011378|Sin3a|20466|transcriptional regulator, SIN3A (yeast)	U22394|Sin3a|20466|transcriptional regulator, SIN3A (yeast)	AK220292|Sin3a|20466|transcriptional regulator, SIN3A (yeast)	BC052716|Sin3a|20466|transcriptional regulator, SIN3A (yeast)
mm9_v1_chr10_+_57206184_57206291	0.325275	ACAGUAU	AK053976|Hsf2|15500|heat shock factor 2	NM_008297|Hsf2|15500|heat shock factor 2	BC018414|Hsf2|15500|heat shock factor 2	AK052270|Hsf2|15500|heat shock factor 2
mm9_v1_chr17_-_12511525_12511663	0.323779	ACAGUAU	BC058719|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	NM_011948|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	U85607|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	U85608|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	AK014185|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	AK035823|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	AK133605|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4
mm9_v1_chr3_+_38785861_38785861	0.317667	ACAGUAU	DQ286572|Fat4|329628|FAT tumor suppressor homolog 4 (Drosophila)	NM_183221|Fat4|329628|FAT tumor suppressor homolog 4 (Drosophila)
mm9_v1_chr13_-_64349830_64349845	0.317621	ACAGUAU	AK041155|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_001122989|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chr2_+_160471623_160471632	0.314709	ACAGUAU	AK145538|Top1|21969|topoisomerase (DNA) I	NM_009408|Top1|21969|topoisomerase (DNA) I
mm9_v1_chr10_+_68675404_68675423	0.3115	ACAGUAU	AK034826|Rhobtb1|69288|Rho-related BTB domain containing 1	NM_001081347|Rhobtb1|69288|Rho-related BTB domain containing 1	BC099973|Rhobtb1|69288|Rho-related BTB domain containing 1
mm9_v1_chr16_+_56075506_56075529	0.309313	ACAGUAU	AK040314|Senp7|66315|SUMO1/sentrin specific peptidase 7	NM_001003971|Senp7|66315|SUMO1/sentrin specific peptidase 7	NM_001003972|Senp7|66315|SUMO1/sentrin specific peptidase 7	NM_001003973|Senp7|66315|SUMO1/sentrin specific peptidase 7	NM_025483|Senp7|66315|SUMO1/sentrin specific peptidase 7
mm9_v1_chr9_+_21420612_21420824	0.30699	ACAGUAU	BC079560|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_001174078|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_001174079|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_011417|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK147285|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK166837|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK160825|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK135308|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK142137|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC061214|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC060229|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC023830|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC032162|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC054056|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC014760|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK051530|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm9_v1_chr2_+_59450080_59450110	0.297756	ACAGUAU	NM_198294|Tanc1|66860|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm9_v1_chr10_-_70747929_70748034	0.294968	ACAGUAU	AK144468|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	AK043167|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	BC019464|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	AK148364|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	NM_145420|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)
mm9_v1_chr4_+_116549978_116550006	0.291353	ACAGUAU	AK016928|Zswim5|74464|zinc finger, SWIM domain containing 5	AK122519|Zswim5|74464|zinc finger, SWIM domain containing 5	NM_001029912|Zswim5|74464|zinc finger, SWIM domain containing 5
mm9_v1_chr19_-_28057437_28057437	0.284726	ACAGUAU	NM_001166414|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr7_+_35904310_35904321	0.281319	ACAGUAU	NM_007678|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	BC011118|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	BC028890|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	BC051102|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	BC058161|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha
mm9_v1_chr4_-_155559234_155559243	0.280786	ACAGUAU	BC150703|Agrn|11603|agrin	NM_021604|Agrn|11603|agrin
mm9_v1_chr9_-_31019392_31019409	0.279678	ACAGUAU	AK013376|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	Z27070|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK149977|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK150020|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK087459|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK160471|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	NM_001102455|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	NM_001102456|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	NM_009691|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	Z22592|Aplp2|11804|amyloid beta (A4) precursor-like protein 2
mm9_v1_chr19_-_17912073_17912162	0.277866	ACAGUAU	AK086210|Pcsk5|18552|proprotein convertase subtilisin/kexin type 5	AK087337|Pcsk5|18552|proprotein convertase subtilisin/kexin type 5	AK143998|Pcsk5|18552|proprotein convertase subtilisin/kexin type 5	NM_001163144|Pcsk5|18552|proprotein convertase subtilisin/kexin type 5	NM_001190483|Pcsk5|18552|proprotein convertase subtilisin/kexin type 5
mm9_v1_chr9_-_88376937_88377419	0.277461	ACAGUAU	BC080309|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC108363|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK083398|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK077588|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC050079|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC055863|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK076026|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AB035725|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK034845|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC041148|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC058807|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019666|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019796|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein
mm9_v1_chr7_+_16986478_16986599	0.276111	ACAGUAU	NM_198631|Zc3h4|330474|zinc finger CCCH-type containing 4	AK151148|Zc3h4|330474|zinc finger CCCH-type containing 4	AK151306|Zc3h4|330474|zinc finger CCCH-type containing 4	BC057627|Zc3h4|330474|zinc finger CCCH-type containing 4
mm9_v1_chr11_-_51570335_51570335	0.275996	ACAGUAU	NM_175255|Sec24a|77371|Sec24 related gene family, member A (S. cerevisiae)
mm9_v1_chrX_+_104451216_104451366	0.27406	ACAGUAU	AK171832|Gpr174|213439|G protein-coupled receptor 174	NM_001177781|Gpr174|213439|G protein-coupled receptor 174	AK156069|Gpr174|213439|G protein-coupled receptor 174	AK153611|Gpr174|213439|G protein-coupled receptor 174	NM_001033251|Gpr174|213439|G protein-coupled receptor 174
mm9_v1_chr13_-_104554635_104554661	0.270603	ACAGUAU	AK081447|Srsf12|218543|serine/arginine-rich splicing factor 12	AK037115|Srsf12|218543|serine/arginine-rich splicing factor 12	AK033354|Srsf12|218543|serine/arginine-rich splicing factor 12	NM_172592|Srsf12|218543|serine/arginine-rich splicing factor 12
mm9_v1_chr5_-_74464390_74464465	0.269403	ACAGUAU	BC039916|Usp46|69727|ubiquitin specific peptidase 46	NM_177561|Usp46|69727|ubiquitin specific peptidase 46	AK145298|Usp46|69727|ubiquitin specific peptidase 46
mm9_v1_chr11_+_57615080_57615164	0.268751	ACAGUAU	BC051686|Sap30l|50724|SAP30-like	NM_001081168|Sap30l|50724|SAP30-like	BC094930|Sap30l|50724|SAP30-like
mm9_v1_chr7_+_130114059_130114440	0.260868	ACAGUAU	NM_011247|Rbbp6|19647|retinoblastoma binding protein 6	NM_175023|Rbbp6|19647|retinoblastoma binding protein 6	AK081261|Rbbp6|19647|retinoblastoma binding protein 6	AK045635|Rbbp6|19647|retinoblastoma binding protein 6	BC025874|Rbbp6|19647|retinoblastoma binding protein 6
mm9_v1_chr2_-_7317513_7317626	0.257659	ACAGUAU	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chrX_-_138825032_138825081	0.255567	ACAGUAU	AK054387|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	NM_001033600|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	NM_019477|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	NM_207625|Acsl4|50790|acyl-CoA synthetase long-chain family member 4
mm9_v1_chr10_-_116585527_116585608	0.251631	ACAGUAU	BC043109|Frs2|327826|fibroblast growth factor receptor substrate 2	NM_177798|Frs2|327826|fibroblast growth factor receptor substrate 2	AK028813|Frs2|327826|fibroblast growth factor receptor substrate 2	AK163442|Frs2|327826|fibroblast growth factor receptor substrate 2	BC055334|Frs2|327826|fibroblast growth factor receptor substrate 2	AK138144|Frs2|327826|fibroblast growth factor receptor substrate 2
mm9_v1_chr3_+_16083164_16083288	0.251406	ACAGUAU	NM_001145919|Ythdf3|229096|YTH domain family 3	NM_172677|Ythdf3|229096|YTH domain family 3	BC067040|Ythdf3|229096|YTH domain family 3	AK039176|Ythdf3|229096|YTH domain family 3	AK137245|Ythdf3|229096|YTH domain family 3	BC067042|Ythdf3|229096|YTH domain family 3	AK053736|Ythdf3|229096|YTH domain family 3	BC057158|Ythdf3|229096|YTH domain family 3
mm9_v1_chr7_+_119166928_119167032	0.25071	ACAGUAU	AK151051|Usp47|74996|ubiquitin specific peptidase 47	NM_133758|Usp47|74996|ubiquitin specific peptidase 47
mm9_v1_chr12_+_8680904_8680950	0.250545	ACAGUAU	AK134185|Pum2|80913|pumilio 2 (Drosophila)	NM_001160221|Pum2|80913|pumilio 2 (Drosophila)	NM_001160222|Pum2|80913|pumilio 2 (Drosophila)	AK163964|Pum2|80913|pumilio 2 (Drosophila)
mm9_v1_chr8_+_77737842_77737842	0.24887	ACAGUAU	BC036988|Rasd2|75141|RASD family, member 2	NM_029182|Rasd2|75141|RASD family, member 2
mm9_v1_chr2_-_38781939_38781980	0.247761	ACAGUAU	U14666|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	NM_010264|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	U09563|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1
mm9_v1_chr7_+_56501558_56501558	0.241806	ACAGUAU	AK039374|Nav2|78286|neuron navigator 2	NM_175272|Nav2|78286|neuron navigator 2
mm9_v1_chr12_+_66066728_66067042	0.235274	ACAGUAU	NM_177805|Fam179b|328108|family with sequence similarity 179, member B	AK141238|Fam179b|328108|family with sequence similarity 179, member B	BC157958|Fam179b|328108|family with sequence similarity 179, member B	BC158008|Fam179b|328108|family with sequence similarity 179, member B	BC172117|Fam179b|328108|family with sequence similarity 179, member B	AK039995|Fam179b|328108|family with sequence similarity 179, member B
mm9_v1_chr12_+_84973146_84973375	0.234968	ACAGUAU	NM_027349|Rbm25|67039|RNA binding motif protein 25	AK011403|Rbm25|67039|RNA binding motif protein 25	AK164367|Rbm25|67039|RNA binding motif protein 25	AK151910|Rbm25|67039|RNA binding motif protein 25	AK144341|AA645497|100499479|expressed sequence AA645497
mm9_v1_chr11_-_51420336_51420404	0.234146	ACAGUAU	BC043069|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	D90151|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	L36663|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK076132|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK013384|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK013709|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK165609|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	NM_001048061|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	NM_010448|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B
mm9_v1_chr9_+_77961044_77961183	0.227621	ACAGUAU	NM_019987|Ick|56542|intestinal cell kinase	AK045950|Ick|56542|intestinal cell kinase	AK164613|Ick|56542|intestinal cell kinase	AK008991|Ick|56542|intestinal cell kinase	AK133537|Ick|56542|intestinal cell kinase	AK087484|Ick|56542|intestinal cell kinase
mm9_v1_chrX_+_65931715_65931923	0.225213	ACAGUAU	AK053829|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	BC079671|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	NM_008031|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK140343|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK046605|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK053701|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK080898|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK080948|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	L23971|Fmr1|14265|fragile X mental retardation syndrome 1 homolog
mm9_v1_chr1_-_145624156_145624181	0.221235	ACAGUAU	AK076167|Trove2|20822|TROVE domain family, member 2	NM_013835|Trove2|20822|TROVE domain family, member 2
mm9_v1_chr17_-_82137708_82137731	0.220453	ACAGUAU	AF004666|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_001112798|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_011406|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	U70033|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	AK084813|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene	AK085810|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene
mm9_v1_chr11_-_78510874_78510941	0.218844	ACAGUAU	BC058652|Nlk|18099|nemo like kinase	NM_008702|Nlk|18099|nemo like kinase
mm9_v1_chr18_-_24179208_24179311	0.218026	ACAGUAU	AK146726|Zfp191|59057|zinc finger protein 191	BC054832|Zfp191|59057|zinc finger protein 191	NM_021559|Zfp191|59057|zinc finger protein 191	AY832930|Zfp191|59057|zinc finger protein 191
mm9_v1_chr14_+_69647294_69647485	0.217371	ACAGUAU	AF099098|Stc1|20855|stanniocalcin 1	BC021425|Stc1|20855|stanniocalcin 1	AK134260|Stc1|20855|stanniocalcin 1	NM_009285|Stc1|20855|stanniocalcin 1	AK142220|Stc1|20855|stanniocalcin 1	AK149293|Stc1|20855|stanniocalcin 1	AK149351|Stc1|20855|stanniocalcin 1	AK161960|Stc1|20855|stanniocalcin 1
mm9_v1_chr3_-_142544883_142544984	0.217209	ACAGUAU	AK046248|Pkn2|109333|protein kinase N2	AK171092|Pkn2|109333|protein kinase N2	BC052073|Pkn2|109333|protein kinase N2	AK077910|Pkn2|109333|protein kinase N2	AK028469|Pkn2|109333|protein kinase N2	AK049713|Pkn2|109333|protein kinase N2	AK133298|Pkn2|109333|protein kinase N2	NM_178654|Pkn2|109333|protein kinase N2
mm9_v1_chr5_+_139728268_139728480	0.216818	ACAGUAU	NM_026269|Get4|67604|golgi to ER traffic protein 4 homolog (S. cerevisiae)	AK003551|Get4|67604|golgi to ER traffic protein 4 homolog (S. cerevisiae)
mm9_v1_chr6_+_8459595_8459595	0.216328	ACAGUAU	NM_133236|Glcci1|170772|glucocorticoid induced transcript 1
mm9_v1_chr6_+_140571183_140571183	0.213587	ACAGUAU	AK029011|Aebp2|11569|AE binding protein 2	NM_178803|Aebp2|11569|AE binding protein 2
mm9_v1_chrX_+_102959815_102959879	0.209111	ACAGUAU	BC132641|Fgf16|80903|fibroblast growth factor 16	BC137993|Fgf16|80903|fibroblast growth factor 16	NM_030614|Fgf16|80903|fibroblast growth factor 16	AB049219|Fgf16|80903|fibroblast growth factor 16	AF292104|Fgf16|80903|fibroblast growth factor 16
mm9_v1_chr17_+_13897509_13897625	0.207577	ACAGUAU	NM_010806|Mllt4|17356|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4	AF172447|Mllt4|17356|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4	AK166398|Mllt4|17356|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4
mm9_v1_chr11_+_77499638_77499656	0.199363	ACAGUAU	AK030113|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK160601|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	NM_001024205|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK170764|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK122494|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2
mm9_v1_chr1_-_135557934_135557977	0.198759	ACAGUAU	AK148376|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK078105|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK145740|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK167700|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK041148|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK017663|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK035705|Zbed6|667118|zinc finger, BED domain containing 6	NM_144530|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr2_+_124436031_124436031	0.198717	ACAGUAU	AB091532|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_172537|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199238|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199239|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199240|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199241|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr9_+_56919839_56919849	0.198205	ACAGUAU	NM_001110351|Sin3a|20466|transcriptional regulator, SIN3A (yeast)
mm9_v1_chr12_+_8681058_8681080	0.196177	ACAGUAU	NM_001160219|Pum2|80913|pumilio 2 (Drosophila)	NM_001160220|Pum2|80913|pumilio 2 (Drosophila)	AK147617|Pum2|80913|pumilio 2 (Drosophila)
mm9_v1_chr5_+_139729444_139729468	0.191178	ACAGUAU	NM_001163316|Get4|67604|golgi to ER traffic protein 4 homolog (S. cerevisiae)	BC019557|Get4|67604|golgi to ER traffic protein 4 homolog (S. cerevisiae)
mm9_v1_chr18_+_36440748_36440822	0.188287	ACAGUAU	NM_008989|Pura|19290|purine rich element binding protein A	U02098|Pura|19290|purine rich element binding protein A
mm9_v1_chr16_-_50432421_50432504	0.188112	ACAGUAU	AK044855|Bbx|70508|bobby sox homolog (Drosophila)	BC019456|Bbx|70508|bobby sox homolog (Drosophila)	BC066821|Bbx|70508|bobby sox homolog (Drosophila)	AF276951|Bbx|70508|bobby sox homolog (Drosophila)	BC064763|Bbx|70508|bobby sox homolog (Drosophila)	BC057869|Bbx|70508|bobby sox homolog (Drosophila)	AK157813|Bbx|70508|bobby sox homolog (Drosophila)	AK049516|Bbx|70508|bobby sox homolog (Drosophila)	AF454943|Bbx|70508|bobby sox homolog (Drosophila)	AK017487|Bbx|70508|bobby sox homolog (Drosophila)	AK029747|Bbx|70508|bobby sox homolog (Drosophila)	AK167724|Bbx|70508|bobby sox homolog (Drosophila)	NM_027444|Bbx|70508|bobby sox homolog (Drosophila)
mm9_v1_chr16_-_17891608_17891820	0.186238	ACAGUAU	AK153026|Dgcr2|13356|DiGeorge syndrome critical region gene 2	X95480|Dgcr2|13356|DiGeorge syndrome critical region gene 2	BC062978|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK145495|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK042786|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK161022|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK163903|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK088131|Dgcr2|13356|DiGeorge syndrome critical region gene 2	D78641|Dgcr2|13356|DiGeorge syndrome critical region gene 2	BC060636|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK163872|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK141594|Dgcr2|13356|DiGeorge syndrome critical region gene 2	NM_001109750|Dgcr2|13356|DiGeorge syndrome critical region gene 2	NM_010048|Dgcr2|13356|DiGeorge syndrome critical region gene 2
mm9_v1_chr3_+_53267715_53267853	0.184224	ACAGUAU	AK087909|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene	AK038404|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene	NM_173382|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene	AK012908|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene	AK161440|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene
mm9_v1_chr9_+_13553574_13553628	0.183357	ACAGUAU	AK020065|Mtmr2|77116|myotubularin related protein 2	NM_023858|Mtmr2|77116|myotubularin related protein 2
mm9_v1_chr9_-_44773594_44773682	0.182445	ACAGUAU	BC025043|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028721|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC006649|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC021406|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028850|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK172893|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	NM_145400|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)
mm9_v1_chr6_+_140572056_140572226	0.175535	ACAGUAU	NM_001005605|Aebp2|11569|AE binding protein 2
mm9_v1_chr5_+_18732863_18732863	0.175169	ACAGUAU	NM_001170746|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chr16_+_35983402_35983472	0.174591	ACAGUAU	AK169464|Kpna1|16646|karyopherin (importin) alpha 1	AK169311|Kpna1|16646|karyopherin (importin) alpha 1	AK169348|Kpna1|16646|karyopherin (importin) alpha 1	AK028307|Kpna1|16646|karyopherin (importin) alpha 1	AK154800|Kpna1|16646|karyopherin (importin) alpha 1	AK028259|Kpna1|16646|karyopherin (importin) alpha 1	NM_008465|Kpna1|16646|karyopherin (importin) alpha 1	U20619|Kpna1|16646|karyopherin (importin) alpha 1	BC006771|Kpna1|16646|karyopherin (importin) alpha 1
mm9_v1_chr12_-_28027541_28027588	0.173627	ACAGUAU	AK146514|Sox11|20666|SRY-box containing gene 11	AF009414|Sox11|20666|SRY-box containing gene 11	BC078643|Sox11|20666|SRY-box containing gene 11	AK165693|Sox11|20666|SRY-box containing gene 11	AK165005|Sox11|20666|SRY-box containing gene 11	NM_009234|Sox11|20666|SRY-box containing gene 11
mm9_v1_chr16_-_18587061_18587061	0.171586	ACAGUAU	AF326960|Tbx1|21380|T-box 1	BC139474|Tbx1|21380|T-box 1	BC145636|Tbx1|21380|T-box 1	NM_011532|Tbx1|21380|T-box 1
mm9_v1_chr13_-_56996948_56996948	0.169169	ACAGUAU	AF139923|Trpc7|26946|transient receptor potential cation channel, subfamily C, member 7	BC117995|Trpc7|26946|transient receptor potential cation channel, subfamily C, member 7	NM_012035|Trpc7|26946|transient receptor potential cation channel, subfamily C, member 7
mm9_v1_chr13_-_85428957_85429102	0.16696	ACAGUAU	NM_145452|Rasa1|218397|RAS p21 protein activator 1	AK046620|Rasa1|218397|RAS p21 protein activator 1
mm9_v1_chr15_-_58046428_58046480	0.164461	ACAGUAU	AK014793|Fbxo32|67731|F-box protein 32	NM_026346|Fbxo32|67731|F-box protein 32	AF441120|Fbxo32|67731|F-box protein 32
mm9_v1_chr11_+_93747419_93747532	0.160544	ACAGUAU	AK153919|Mbtd1|103537|mbt domain containing 1	BC064014|Mbtd1|103537|mbt domain containing 1	BC062907|Mbtd1|103537|mbt domain containing 1	NM_134012|Mbtd1|103537|mbt domain containing 1
mm9_v1_chr9_+_114640266_114640368	0.160502	ACAGUAU	AK171394|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK152723|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK152817|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK012941|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK150775|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK151092|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK151431|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK152448|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK153092|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	NM_026036|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK170905|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK159735|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK167854|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK128960|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK154481|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK167499|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK030885|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK145743|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	BC027248|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK165948|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK159439|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6
mm9_v1_chr5_+_122734363_122734418	0.15701	ACAGUAU	AK135118|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)	AK083481|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)	AK078914|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)	BC068149|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)	NM_177242|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)
mm9_v1_chr5_+_151062363_151062504	0.150949	ACAGUAU	NM_172887|Fry|320365|furry homolog (Drosophila)
mm9_v1_chr1_+_64579358_64579513	0.144624	ACAGUAU	NM_001037726|Creb1|12912|cAMP responsive element binding protein 1	NM_009952|Creb1|12912|cAMP responsive element binding protein 1	NM_133828|Creb1|12912|cAMP responsive element binding protein 1	AK079223|Creb1|12912|cAMP responsive element binding protein 1	X92497|Creb1|12912|cAMP responsive element binding protein 1	AK042595|Creb1|12912|cAMP responsive element binding protein 1	BC021649|Creb1|12912|cAMP responsive element binding protein 1	M95106|Creb1|12912|cAMP responsive element binding protein 1	AF448507|Creb1|12912|cAMP responsive element binding protein 1
mm9_v1_chr12_-_76836549_76836721	0.138661	ACAGUAU	AF415215|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	BC037592|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	BC026814|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AF247177|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AK154116|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AK043586|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AK149860|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	NM_030750|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1
mm9_v1_chr3_-_133207209_133207353	0.134177	ACAGUAU	AK155776|Tet2|214133|tet oncogene family member 2	DQ079067|Tet2|214133|tet oncogene family member 2	NM_001040400|Tet2|214133|tet oncogene family member 2
mm9_v1_chr12_+_109417947_109418052	0.133817	ACAGUAU	NM_009832|Ccnk|12454|cyclin K	AK089386|Ccnk|12454|cyclin K	AK146711|Ccnk|12454|cyclin K	AK154765|Ccnk|12454|cyclin K	AK154679|Ccnk|12454|cyclin K	BC027297|Ccnk|12454|cyclin K
mm9_v1_chr18_-_23200150_23200199	0.129779	ACAGUAU	AK006244|Nol4|319211|nucleolar protein 4	AK031008|Nol4|319211|nucleolar protein 4	NM_199024|Nol4|319211|nucleolar protein 4	AK005959|Nol4|319211|nucleolar protein 4
mm9_v1_chr14_-_78707695_78707851	0.12865	ACAGUAU	AB008426|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	AB032771|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	AB032772|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	AB036798|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	BC125603|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	BC131970|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	AF019048|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	AF013170|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	AK159997|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	AK159498|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	NM_011613|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11
mm9_v1_chr14_+_55512965_55513167	0.126605	ACAGUAU	NM_019402|Pabpn1|54196|poly(A) binding protein, nuclear 1	AK032172|Pabpn1|54196|poly(A) binding protein, nuclear 1	BC055866|Pabpn1|54196|poly(A) binding protein, nuclear 1	AK157143|Pabpn1|54196|poly(A) binding protein, nuclear 1	BC049869|Pabpn1|54196|poly(A) binding protein, nuclear 1
mm9_v1_chr3_-_84024766_84024812	0.126372	ACAGUAU	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr9_-_106691395_106691543	0.125244	ACAGUAU	BC133714|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK155151|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK090250|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK083903|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	NM_030730|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)
mm9_v1_chr17_+_26852581_26852657	0.120117	ACAGUAU	AK030092|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	NM_029870|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK044760|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK020796|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132423|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132454|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene
mm9_v1_chr11_+_51076626_51076703	0.112425	ACAGUAU	NM_007714|Clk4|12750|CDC like kinase 4	BC012675|Clk4|12750|CDC like kinase 4	AK013974|Clk4|12750|CDC like kinase 4	U94846|Clk4|12750|CDC like kinase 4	AF033566|Clk4|12750|CDC like kinase 4
mm9_v1_chr4_-_129349948_129350020	0.11173	ACAGUAU	AK084212|Kpna6|16650|karyopherin (importin) alpha 6	AK046371|Kpna6|16650|karyopherin (importin) alpha 6	AK154882|Kpna6|16650|karyopherin (importin) alpha 6	NM_008468|Kpna6|16650|karyopherin (importin) alpha 6
mm9_v1_chr13_+_14156038_14156092	0.105359	ACAGUAU	AK136105|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	AK041414|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	NM_194262|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	NM_198122|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	AK161669|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	AK031062|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)
mm9_v1_chr3_-_90313339_90313430	0.104795	ACAGUAU	AK004558|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	NM_023215|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AB041654|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK152492|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	BC066837|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	BC051939|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK005377|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK047914|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK132769|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK135914|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK010866|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK077960|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene
mm9_v1_chr1_+_166179176_166179227	0.102603	ACAGUAU	AK044825|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	AF179403|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	AF418986|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	NM_054087|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	AF360396|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	BC034659|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	AF216204|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2
mm9_v1_chr17_+_8358382_8358453	0.100651	ACAGUAU	AK016110|Fgfr1op|75296|Fgfr1 oncogene partner	NM_001197046|Fgfr1op|75296|Fgfr1 oncogene partner	NM_201230|Fgfr1op|75296|Fgfr1 oncogene partner	AK029470|Fgfr1op|75296|Fgfr1 oncogene partner	BC108331|Fgfr1op|75296|Fgfr1 oncogene partner	BC080717|Fgfr1op|75296|Fgfr1 oncogene partner	AK031261|Fgfr1op|75296|Fgfr1 oncogene partner	BC050774|Fgfr1op|75296|Fgfr1 oncogene partner	AK050389|Fgfr1op|75296|Fgfr1 oncogene partner	BC058804|Fgfr1op|75296|Fgfr1 oncogene partner	AK028778|Fgfr1op|75296|Fgfr1 oncogene partner
mm9_v1_chr3_+_126066744_126066789	0.100475	ACAGUAU	AK034584|Arsj|271970|arylsulfatase J	AK034454|Arsj|271970|arylsulfatase J	NM_173451|Arsj|271970|arylsulfatase J	AK046410|Arsj|271970|arylsulfatase J	AK052931|Arsj|271970|arylsulfatase J
mm9_v1_chr4_-_33335761_33335761	0.0996598	ACAGUAU	NM_001033225|Pnrc1|108767|proline-rich nuclear receptor coactivator 1
mm9_v1_chr9_+_77956998_77957048	0.0979666	ACAGUAU	AK154185|Ick|56542|intestinal cell kinase	NM_001163780|Ick|56542|intestinal cell kinase
mm9_v1_chr6_-_47998112_47998112	0.0952975	ACAGUAU	NM_001081382|Zfp777|72306|zinc finger protein 777
mm9_v1_chr8_-_83538732_83538837	0.0952792	ACAGUAU	BC058784|Usp38|74841|ubiquitin specific peptidase 38	BC066786|Usp38|74841|ubiquitin specific peptidase 38	AK129464|Usp38|74841|ubiquitin specific peptidase 38	AK049287|Usp38|74841|ubiquitin specific peptidase 38	AK028904|Usp38|74841|ubiquitin specific peptidase 38	BC057122|Usp38|74841|ubiquitin specific peptidase 38	AK142200|Usp38|74841|ubiquitin specific peptidase 38	BC054404|Usp38|74841|ubiquitin specific peptidase 38	NM_027554|Usp38|74841|ubiquitin specific peptidase 38	AK054116|Usp38|74841|ubiquitin specific peptidase 38	AK139639|Usp38|74841|ubiquitin specific peptidase 38	AK052219|Usp38|74841|ubiquitin specific peptidase 38
mm9_v1_chr7_-_34953455_34953570	0.0940012	ACAGUAU	AK178317|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK184258|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK189465|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK192304|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK194855|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK204958|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK213601|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK219234|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK219985|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK169168|Uba2|50995|ubiquitin-like modifier activating enzyme 2	U35833|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK163451|Uba2|50995|ubiquitin-like modifier activating enzyme 2	NM_016682|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK151765|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK152977|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK168673|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK164826|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK165321|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK152415|Uba2|50995|ubiquitin-like modifier activating enzyme 2
mm9_v1_chr14_-_103381744_103381856	0.0919312	ACAGUAU	BC116647|Kctd12|239217|potassium channel tetramerisation domain containing 12	BC116648|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK035535|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK172581|Kctd12|239217|potassium channel tetramerisation domain containing 12	NM_177715|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK087895|Kctd12|239217|potassium channel tetramerisation domain containing 12
mm9_v1_chr9_-_86775154_86775279	0.0917123	ACAGUAU	M83985|Snap91|20616|synaptosomal-associated protein 91	NM_013669|Snap91|20616|synaptosomal-associated protein 91	BC031773|Snap91|20616|synaptosomal-associated protein 91	AK159570|Snap91|20616|synaptosomal-associated protein 91	AK147087|Snap91|20616|synaptosomal-associated protein 91
mm9_v1_chr5_-_144493077_144493148	0.0840979	ACAGUAU	NM_029749|Usp42|76800|ubiquitin specific peptidase 42
mm9_v1_chr2_+_177876635_177876639	0.0827064	ACAGUAU	AK135144|Phactr3|74189|phosphatase and actin regulator 3	NM_028806|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr14_+_28051224_28051247	0.0812261	ACAGUAU	AK004600|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	NM_027871|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	AK036737|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	AK036749|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3
mm9_v1_chr7_+_130267398_130267398	0.0808597	ACAGUAU	NM_144925|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chrX_+_50265390_50265552	0.0777168	ACAGUAU	AK157045|Phf6|70998|PHD finger protein 6	AK012211|Phf6|70998|PHD finger protein 6	AK077803|Phf6|70998|PHD finger protein 6	AK163345|Phf6|70998|PHD finger protein 6	BC043127|Phf6|70998|PHD finger protein 6	NM_027642|Phf6|70998|PHD finger protein 6	AK141804|Phf6|70998|PHD finger protein 6	BC055330|Phf6|70998|PHD finger protein 6	AK122560|Phf6|70998|PHD finger protein 6	AK028498|Phf6|70998|PHD finger protein 6	AK038320|Phf6|70998|PHD finger protein 6	BC057374|Phf6|70998|PHD finger protein 6	AK192342|Phf6|70998|PHD finger protein 6	AK213676|Phf6|70998|PHD finger protein 6
mm9_v1_chr2_+_125977876_125977974	0.0701388	ACAGUAU	AK149746|Dtwd1|69185|DTW domain containing 1	NM_026981|Dtwd1|69185|DTW domain containing 1	BC020149|Dtwd1|69185|DTW domain containing 1
mm9_v1_chr3_-_153388047_153388152	0.0690872	ACAGUAU	BC131987|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	BC132317|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	BC058387|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	AK034804|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	NM_011372|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	Y11342|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
mm9_v1_chrX_-_5046382_5046382	0.0687398	ACAGUAU	AK132789|Mycs|17870|myc-like oncogene, s-myc protein	NM_010850|Mycs|17870|myc-like oncogene, s-myc protein
mm9_v1_chr3_+_58810899_58810899	0.061816	ACAGUAU	AK047743|Med12l|329650|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like	NM_177855|Med12l|329650|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like
mm9_v1_chr4_+_147822690_147822721	0.0616433	ACAGUAU	NM_020009|Mtor|56717|mechanistic target of rapamycin (serine/threonine kinase)	AK172584|Mtor|56717|mechanistic target of rapamycin (serine/threonine kinase)	AF152838|Mtor|56717|mechanistic target of rapamycin (serine/threonine kinase)	AK036004|Mtor|56717|mechanistic target of rapamycin (serine/threonine kinase)
mm9_v1_chr10_-_20444654_20444883	0.0599289	ACAGUAU	AF190639|Pde7b|29863|phosphodiesterase 7B	BC130267|Pde7b|29863|phosphodiesterase 7B	AK020137|Pde7b|29863|phosphodiesterase 7B	AK040876|Pde7b|29863|phosphodiesterase 7B	NM_013875|Pde7b|29863|phosphodiesterase 7B	AK035385|Pde7b|29863|phosphodiesterase 7B
mm9_v1_chr14_-_103498719_103498784	0.0579902	ACAGUAU	AK142007|Fbxl3|50789|F-box and leucine-rich repeat protein 3	NM_015822|Fbxl3|50789|F-box and leucine-rich repeat protein 3	AK080863|Fbxl3|50789|F-box and leucine-rich repeat protein 3	AK080802|Fbxl3|50789|F-box and leucine-rich repeat protein 3
mm9_v1_chrX_+_162608411_162608448	0.0569797	ACAGUAU	AK045118|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK160583|Gemin8|237221|gem (nuclear organelle) associated protein 8	NM_146238|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK085045|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK037580|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK047511|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK053774|Gemin8|237221|gem (nuclear organelle) associated protein 8
mm9_v1_chr9_-_50817077_50817177	0.0566396	ACAGUAU	AB067780|Sik2|235344|salt inducible kinase 2	AK090386|Sik2|235344|salt inducible kinase 2	AK028526|Sik2|235344|salt inducible kinase 2	AK041032|Sik2|235344|salt inducible kinase 2	NM_178710|Sik2|235344|salt inducible kinase 2
mm9_v1_chr2_+_22923653_22923769	0.0519826	ACAGUAU	NM_001102436|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	NM_028793|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	AK050450|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	BC090641|Acbd5|74159|acyl-Coenzyme A binding domain containing 5
mm9_v1_chr15_+_58720783_58720964	0.0516791	ACAGUAU	AK029069|Rnf139|75841|ring finger protein 139	NM_175226|Rnf139|75841|ring finger protein 139	AK028400|Rnf139|75841|ring finger protein 139	BC052901|Rnf139|75841|ring finger protein 139	AK033506|Rnf139|75841|ring finger protein 139	AK171807|Tatdn1|69694|TatD DNase domain containing 1
mm9_v1_chr9_+_91263809_91263809	0.0510474	ACAGUAU	AK046913|Zic4|22774|zinc finger protein of the cerebellum 4	NM_009576|Zic4|22774|zinc finger protein of the cerebellum 4
mm9_v1_chr1_+_155587480_155587527	0.0503963	ACAGUAU	AK079543|Rgs16|19734|regulator of G-protein signaling 16	NM_011267|Rgs16|19734|regulator of G-protein signaling 16	AK154324|Rgs16|19734|regulator of G-protein signaling 16	U94828|Rgs16|19734|regulator of G-protein signaling 16	U67189|Rgs16|19734|regulator of G-protein signaling 16	BC049968|Rgs16|19734|regulator of G-protein signaling 16	BC010980|Rgs16|19734|regulator of G-protein signaling 16	BC055459|Rgs16|19734|regulator of G-protein signaling 16	U72881|Rgs16|19734|regulator of G-protein signaling 16
mm9_v1_chr14_-_62058627_62058783	0.0493913	ACAGUAU	AF020772|Kpna3|16648|karyopherin (importin) alpha 3	AK011559|Kpna3|16648|karyopherin (importin) alpha 3	AK049373|Kpna3|16648|karyopherin (importin) alpha 3	BC026885|Kpna3|16648|karyopherin (importin) alpha 3	AK161664|Kpna3|16648|karyopherin (importin) alpha 3	NM_008466|Kpna3|16648|karyopherin (importin) alpha 3
mm9_v1_chrX_-_48559008_48559019	0.0488009	ACAGUAU	AK040522|Mbnl3|171170|muscleblind-like 3 (Drosophila)	NM_134163|Mbnl3|171170|muscleblind-like 3 (Drosophila)	AK088971|Mbnl3|171170|muscleblind-like 3 (Drosophila)
mm9_v1_chr2_+_22924561_22924686	0.0468584	ACAGUAU	NM_001102437|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	NM_001102438|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	AK147839|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	BC053518|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	BC035202|Acbd5|74159|acyl-Coenzyme A binding domain containing 5
mm9_v1_chr7_-_151739579_151739635	0.0460518	ACAGUAU	BC157936|Ppfia1|233977|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	BC158007|Ppfia1|233977|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	EU568869|Ppfia1|233977|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	NM_001033319|Ppfia1|233977|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	NM_001195086|Ppfia1|233977|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
mm9_v1_chr18_+_23573908_23573935	0.0402829	ACAGUAU	NM_010087|Dtna|13527|dystrobrevin alpha	NM_207650|Dtna|13527|dystrobrevin alpha
mm9_v1_chr15_-_43002356_43002397	0.039649	ACAGUAU	AK087485|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	NM_172815|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK052457|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK049891|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)
mm9_v1_chr17_+_30141959_30142039	0.0359608	ACAGUAU	AK082915|Zfand3|21769|zinc finger, AN1-type domain 3	AK148316|Zfand3|21769|zinc finger, AN1-type domain 3	BC083124|Zfand3|21769|zinc finger, AN1-type domain 3	NM_148926|Zfand3|21769|zinc finger, AN1-type domain 3
mm9_v1_chr1_-_63160764_63160840	0.0341433	ACAGUAU	AK049468|Ino80d|227195|INO80 complex subunit D	NM_001081436|Ino80d|227195|INO80 complex subunit D	NM_001114609|Ino80d|227195|INO80 complex subunit D
mm9_v1_chr7_-_81699435_81699678	0.0335326	ACAGUAU	AK166266|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	BC094464|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	AK037938|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	BC025059|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	AK152488|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	AF226324|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	AK151781|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	AK031280|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	NM_001038643|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	NM_023908|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1
mm9_v1_chr19_-_28085534_28085655	0.029289	ACAGUAU	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr8_-_112261607_112261664	0.0288228	ACAGUAU	AK089170|Atxn1l|52335|ataxin 1-like	NM_001080930|Atxn1l|52335|ataxin 1-like	AK172521|Atxn1l|52335|ataxin 1-like
mm9_v1_chr4_-_152856922_152856938	0.0255679	ACAGUAU	NM_001099299|Ajap1|230959|adherens junction associated protein 1
mm9_v1_chr3_-_107320881_107320937	0.0136588	ACAGUAU	AK163113|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	AY155578|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	NM_172271|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17
mm9_v1_chr8_+_113245378_113245384	0.0110552	ACAGUAU	BC060632|Mtss1l|244654|metastasis suppressor 1-like	NM_198625|Mtss1l|244654|metastasis suppressor 1-like
mm9_v1_chr7_+_56214442_56214485	0.010403	ACAGUAU	AK019901|Nav2|78286|neuron navigator 2	NM_001111016|Nav2|78286|neuron navigator 2	AK084063|Nav2|78286|neuron navigator 2	AK162444|Nav2|78286|neuron navigator 2
mm9_v1_chr2_+_154262114_154262265	0.00324444	ACAGUAU	AK148027|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_009823|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_172860|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK040403|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	DQ213025|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	BC064679|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK049206|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)
mm9_v1_chr4_-_148681792_148681843	0.000844221	ACAGUAU	AK036129|Kif1b|16561|kinesin family member 1B	NM_008441|Kif1b|16561|kinesin family member 1B	NM_207682|Kif1b|16561|kinesin family member 1B	AK134946|Kif1b|16561|kinesin family member 1B
