mm9_v1_chr4_-_91066674_91066674	7.33916	ACCCUGU	BC049125|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	BC058393|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207685|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr4_-_91042997_91043190	6.89683	ACCCUGU	AK149201|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	AK141919|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_001177883|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr4_-_91038729_91038745	6.79345	ACCCUGU	U29088|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_010486|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207686|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr1_+_155500166_155500298	4.98031	ACCCUGU	NM_026380|Rgs8|67792|regulator of G-protein signaling 8	BC065056|Rgs8|67792|regulator of G-protein signaling 8	AK044337|Rgs8|67792|regulator of G-protein signaling 8	AK142301|Rgs8|67792|regulator of G-protein signaling 8
mm9_v1_chr12_+_30219769_30219800	4.67484	ACCCUGU	AK036205|Myt1l|17933|myelin transcription factor 1-like	NM_001093776|Myt1l|17933|myelin transcription factor 1-like	BC079651|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr11_-_36757743_36757744	4.45726	ACCCUGU	BC141361|Odz2|23964|odd Oz/ten-m homolog 2 (Drosophila)	NM_011856|Odz2|23964|odd Oz/ten-m homolog 2 (Drosophila)
mm9_v1_chr12_+_30213224_30213265	4.29852	ACCCUGU	AK012660|Myt1l|17933|myelin transcription factor 1-like	AK139366|Myt1l|17933|myelin transcription factor 1-like	NM_001093775|Myt1l|17933|myelin transcription factor 1-like	NM_001093778|Myt1l|17933|myelin transcription factor 1-like	NM_008666|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr11_+_42233258_42233286	4.24836	ACCCUGU	AK090279|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	NM_008070|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	BC145973|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	BC145975|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2
mm9_v1_chr11_+_98769464_98769464	4.21407	ACCCUGU	AJ009559|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AJ223087|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	NM_011799|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)
mm9_v1_chr11_+_98769162_98769202	4.11264	ACCCUGU	AK162669|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK075975|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK085020|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK012192|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	BC052434|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	NM_001025779|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)
mm9_v1_chr13_+_118391126_118391233	3.68318	ACCCUGU	AK158322|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1	NM_010408|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1
mm9_v1_chr2_+_65683823_65683911	3.40696	ACCCUGU	NM_153409|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	NM_178634|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	EF210820|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK039150|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK082649|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK020730|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK080761|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	BC055701|Csrnp3|77771|cysteine-serine-rich nuclear protein 3
mm9_v1_chr1_-_134603848_134603902	3.24552	ACCCUGU	AK129207|Nfasc|269116|neurofascin	NM_001160318|Nfasc|269116|neurofascin
mm9_v1_chr4_+_32504409_32504501	3.16678	ACCCUGU	NM_001109661|Bach2|12014|BTB and CNC homology 2	BC131642|Bach2|12014|BTB and CNC homology 2
mm9_v1_chr1_-_134539434_134539434	3.11836	ACCCUGU	NM_001160316|Nfasc|269116|neurofascin
mm9_v1_chr12_-_68323528_68323535	2.97664	ACCCUGU	AK034513|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2	AK137667|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2	NM_001193266|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2	NM_207010|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2
mm9_v1_chr9_+_72655019_72655080	2.75354	ACCCUGU	AY630257|Prtg|235472|protogenin homolog (Gallus gallus)	DQ360114|Prtg|235472|protogenin homolog (Gallus gallus)	NM_175485|Prtg|235472|protogenin homolog (Gallus gallus)
mm9_v1_chr6_-_113145321_113145377	2.74565	ACCCUGU	AK220449|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	BC085130|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	AK046437|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	NM_177763|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4
mm9_v1_chr9_+_21001148_21001171	2.73316	ACCCUGU	NM_019798|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chr10_+_4795808_4795848	2.58585	ACCCUGU	AF535143|Syne1|64009|synaptic nuclear envelope 1	NM_153399|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr5_-_84846348_84846408	2.57818	ACCCUGU	BC057401|Epha5|13839|Eph receptor A5	AK133698|Epha5|13839|Eph receptor A5	AK034289|Epha5|13839|Eph receptor A5	AK049740|Epha5|13839|Eph receptor A5	NM_007937|Epha5|13839|Eph receptor A5
mm9_v1_chr6_+_103460834_103460869	2.5145	ACCCUGU	AK040765|Chl1|12661|cell adhesion molecule with homology to L1CAM	NM_007697|Chl1|12661|cell adhesion molecule with homology to L1CAM
mm9_v1_chr10_-_42894259_42894340	2.45785	ACCCUGU	BC059851|Sobp|109205|sine oculis-binding protein homolog (Drosophila)	NM_175407|Sobp|109205|sine oculis-binding protein homolog (Drosophila)
mm9_v1_chr11_-_5965743_5965763	2.39717	ACCCUGU	AK046454|Camk2b|12323|calcium/calmodulin-dependent protein kinase II, beta	NM_001174053|Camk2b|12323|calcium/calmodulin-dependent protein kinase II, beta	NM_001174054|Camk2b|12323|calcium/calmodulin-dependent protein kinase II, beta	NM_007595|Camk2b|12323|calcium/calmodulin-dependent protein kinase II, beta
mm9_v1_chr1_-_134638361_134638397	2.32948	ACCCUGU	AK052440|Nfasc|269116|neurofascin	NM_001160317|Nfasc|269116|neurofascin	NM_182716|Nfasc|269116|neurofascin
mm9_v1_chr7_-_116651647_116651647	2.2678	ACCCUGU	AY572454|Trim66|330627|tripartite motif-containing 66	AY572455|Trim66|330627|tripartite motif-containing 66	NM_001170912|Trim66|330627|tripartite motif-containing 66	NM_181853|Trim66|330627|tripartite motif-containing 66
mm9_v1_chr7_-_116637251_116637251	2.22198	ACCCUGU	AK147559|Trim66|330627|tripartite motif-containing 66	NM_001170913|Trim66|330627|tripartite motif-containing 66
mm9_v1_chr18_-_24688688_24688704	1.95673	ACCCUGU	AK220475|Rprd1a|225283|regulation of nuclear pre-mRNA domain containing 1A	NM_144861|Rprd1a|225283|regulation of nuclear pre-mRNA domain containing 1A
mm9_v1_chr4_+_57580989_57581153	1.91846	ACCCUGU	AK045344|Palm2|242481|paralemmin 2	NM_172868|Palm2|242481|paralemmin 2	BC113156|Palm2|242481|paralemmin 2
mm9_v1_chr8_-_17535279_17535384	1.89535	ACCCUGU	AY017475|Csmd1|94109|CUB and Sushi multiple domains 1	AK038679|Csmd1|94109|CUB and Sushi multiple domains 1	AK048698|Csmd1|94109|CUB and Sushi multiple domains 1	AK134585|Csmd1|94109|CUB and Sushi multiple domains 1	NM_053171|Csmd1|94109|CUB and Sushi multiple domains 1
mm9_v1_chr1_-_63160764_63160840	1.8566	ACCCUGU	AK049468|Ino80d|227195|INO80 complex subunit D	NM_001081436|Ino80d|227195|INO80 complex subunit D	NM_001114609|Ino80d|227195|INO80 complex subunit D
mm9_v1_chr18_-_77803843_77803942	1.79704	ACCCUGU	DQ465971|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	NM_001164504|Rnf165|225743|ring finger protein 165
mm9_v1_chr14_-_55482884_55482994	1.78898	ACCCUGU	AK129361|Homez|239099|homeodomain leucine zipper-encoding gene	AY258064|Homez|239099|homeodomain leucine zipper-encoding gene	NM_001177705|Homez|239099|homeodomain leucine zipper-encoding gene
mm9_v1_chr6_-_120443824_120443824	1.77672	ACCCUGU	AF277399|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	BC137862|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	NM_033567|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)
mm9_v1_chr11_-_118074052_118074068	1.76058	ACCCUGU	AK158216|Cyth1|19157|cytohesin 1	NM_001112700|Cyth1|19157|cytohesin 1
mm9_v1_chr5_+_97426665_97426877	1.72714	ACCCUGU	AY050249|Bmp2k|140780|BMP2 inducible kinase	NM_080708|Bmp2k|140780|BMP2 inducible kinase	AK046752|Bmp2k|140780|BMP2 inducible kinase
mm9_v1_chr9_+_20970150_20970317	1.72501	ACCCUGU	AK153657|Pde4a|18577|phosphodiesterase 4A, cAMP specific	NM_183408|Pde4a|18577|phosphodiesterase 4A, cAMP specific	BC139405|Pde4a|18577|phosphodiesterase 4A, cAMP specific	BC139408|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chr17_+_31194623_31194718	1.62669	ACCCUGU	NM_009593|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	AF323659|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	Z48745|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	U34920|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	BC119471|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	AK037433|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1
mm9_v1_chr10_+_110182506_110182701	1.62231	ACCCUGU	AK051521|E2f7|52679|E2F transcription factor 7	NM_178609|E2f7|52679|E2F transcription factor 7	AK031078|E2f7|52679|E2F transcription factor 7	AK041481|E2f7|52679|E2F transcription factor 7	AY463359|E2f7|52679|E2F transcription factor 7	AK143686|E2f7|52679|E2F transcription factor 7	BC145429|E2f7|52679|E2F transcription factor 7	BC150772|E2f7|52679|E2F transcription factor 7	AK045040|E2f7|52679|E2F transcription factor 7
mm9_v1_chr15_+_80629020_80629144	1.62064	ACCCUGU	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr13_+_41701584_41701584	1.61738	ACCCUGU	NM_001163572|Tmem170b|621976|transmembrane protein 170B
mm9_v1_chr19_-_5118229_5118407	1.61676	ACCCUGU	AF055666|Klc2|16594|kinesin light chain 2	BC014845|Klc2|16594|kinesin light chain 2	AK141439|Klc2|16594|kinesin light chain 2	NM_008451|Klc2|16594|kinesin light chain 2
mm9_v1_chr12_-_81861527_81861701	1.59065	ACCCUGU	AK147473|Gm1568|380768|predicted gene 1568	BC067044|Gm1568|380768|predicted gene 1568	NM_001008423|Gm1568|380768|predicted gene 1568
mm9_v1_chr19_-_58935470_58935484	1.56897	ACCCUGU	AY196789|Hspa12a|73442|heat shock protein 12A	AK141925|Hspa12a|73442|heat shock protein 12A	NM_175199|Hspa12a|73442|heat shock protein 12A
mm9_v1_chr14_-_55479326_55479326	1.56885	ACCCUGU	BC094669|Homez|239099|homeodomain leucine zipper-encoding gene	NM_183174|Homez|239099|homeodomain leucine zipper-encoding gene
mm9_v1_chr19_+_32832002_32832163	1.56603	ACCCUGU	NM_008960|Pten|19211|phosphatase and tensin homolog	AK164302|Pten|19211|phosphatase and tensin homolog	AK088717|Pten|19211|phosphatase and tensin homolog	AK076980|Pten|19211|phosphatase and tensin homolog
mm9_v1_chr8_+_109394141_109394246	1.5528	ACCCUGU	NM_008217|Has3|15118|hyaluronan synthase 3	U86408|Has3|15118|hyaluronan synthase 3	BC138152|Has3|15118|hyaluronan synthase 3	BC138161|Has3|15118|hyaluronan synthase 3
mm9_v1_chr11_-_103611082_103611134	1.51672	ACCCUGU	AF469004|Wnt9b|22412|wingless-type MMTV integration site 9B	AB073819|Wnt9b|22412|wingless-type MMTV integration site 9B	BC110482|Wnt9b|22412|wingless-type MMTV integration site 9B	AK052708|Wnt9b|22412|wingless-type MMTV integration site 9B	NM_011719|Wnt9b|22412|wingless-type MMTV integration site 9B
mm9_v1_chr2_+_172375092_172375143	1.50841	ACCCUGU	NM_009335|Tcfap2c|21420|transcription factor AP-2, gamma	X94694|Tcfap2c|21420|transcription factor AP-2, gamma	AK145166|Tcfap2c|21420|transcription factor AP-2, gamma
mm9_v1_chr11_-_118109789_118109956	1.44247	ACCCUGU	BC057974|Cyth1|19157|cytohesin 1	AK078502|Cyth1|19157|cytohesin 1	AB013464|Cyth1|19157|cytohesin 1	AK220302|Cyth1|19157|cytohesin 1	AK172296|Cyth1|19157|cytohesin 1	AB035538|Cyth1|19157|cytohesin 1	AY126516|Cyth1|19157|cytohesin 1	NM_001112699|Cyth1|19157|cytohesin 1	NM_011180|Cyth1|19157|cytohesin 1
mm9_v1_chr15_+_80541675_80541764	1.39993	ACCCUGU	AK048628|Tnrc6b|213988|trinucleotide repeat containing 6b	NM_144812|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr1_+_64579358_64579513	1.33432	ACCCUGU	NM_001037726|Creb1|12912|cAMP responsive element binding protein 1	NM_009952|Creb1|12912|cAMP responsive element binding protein 1	NM_133828|Creb1|12912|cAMP responsive element binding protein 1	AK079223|Creb1|12912|cAMP responsive element binding protein 1	X92497|Creb1|12912|cAMP responsive element binding protein 1	AK042595|Creb1|12912|cAMP responsive element binding protein 1	BC021649|Creb1|12912|cAMP responsive element binding protein 1	M95106|Creb1|12912|cAMP responsive element binding protein 1	AF448507|Creb1|12912|cAMP responsive element binding protein 1
mm9_v1_chr2_-_7317824_7317824	1.23263	ACCCUGU	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr1_-_67085404_67085478	1.21636	ACCCUGU	Y16518|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	BC058560|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	NM_001190984|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	Y11550|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	AK146120|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	AJ294535|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	NM_001190985|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	NM_021295|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1
mm9_v1_chr6_-_126690651_126690691	1.1394	ACCCUGU	NM_013568|Kcna6|16494|potassium voltage-gated channel, shaker-related, subfamily, member 6
mm9_v1_chr11_+_74433092_74433113	1.13838	ACCCUGU	AK143211|E130309D14Rik|432582|RIKEN cDNA E130309D14 gene	NM_001013784|E130309D14Rik|432582|RIKEN cDNA E130309D14 gene
mm9_v1_chr19_+_45438212_45438344	1.13391	ACCCUGU	NM_001037758|Btrc|12234|beta-transducin repeat containing protein	NM_009771|Btrc|12234|beta-transducin repeat containing protein	AK220183|Btrc|12234|beta-transducin repeat containing protein	AK145624|Btrc|12234|beta-transducin repeat containing protein	AK052317|Btrc|12234|beta-transducin repeat containing protein	AK083257|Btrc|12234|beta-transducin repeat containing protein	AF081887|Btrc|12234|beta-transducin repeat containing protein	AK032221|Btrc|12234|beta-transducin repeat containing protein	AK145091|Btrc|12234|beta-transducin repeat containing protein	BC052879|Btrc|12234|beta-transducin repeat containing protein	BC003989|Btrc|12234|beta-transducin repeat containing protein	AF099932|Btrc|12234|beta-transducin repeat containing protein	AF110396|Btrc|12234|beta-transducin repeat containing protein	AF112979|Btrc|12234|beta-transducin repeat containing protein	AK180045|Btrc|12234|beta-transducin repeat containing protein	AK188552|Btrc|12234|beta-transducin repeat containing protein	AK189588|Btrc|12234|beta-transducin repeat containing protein
mm9_v1_chr2_+_172376490_172376538	1.08581	ACCCUGU	NM_001159696|Tcfap2c|21420|transcription factor AP-2, gamma	AK145603|Tcfap2c|21420|transcription factor AP-2, gamma
mm9_v1_chr19_-_19075535_19075606	1.08243	ACCCUGU	DQ779924|Rorb|225998|RAR-related orphan receptor beta	BC024768|Rorb|225998|RAR-related orphan receptor beta	AK044421|Rorb|225998|RAR-related orphan receptor beta	BC024842|Rorb|225998|RAR-related orphan receptor beta	NM_146095|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr8_+_109817355_109817761	1.02676	ACCCUGU	AK045123|Nfat5|54446|nuclear factor of activated T-cells 5	AK134022|Nfat5|54446|nuclear factor of activated T-cells 5	NM_018823|Nfat5|54446|nuclear factor of activated T-cells 5	NM_133957|Nfat5|54446|nuclear factor of activated T-cells 5	AK052632|Nfat5|54446|nuclear factor of activated T-cells 5	AF162853|Nfat5|54446|nuclear factor of activated T-cells 5	AK172011|Nfat5|54446|nuclear factor of activated T-cells 5	AF369980|Nfat5|54446|nuclear factor of activated T-cells 5	AF453571|Nfat5|54446|nuclear factor of activated T-cells 5
mm9_v1_chr17_-_66426361_66426428	0.986382	ACCCUGU	AK153850|Ankrd12|106585|ankyrin repeat domain 12	BC094292|Ankrd12|106585|ankyrin repeat domain 12	BC050185|Ankrd12|106585|ankyrin repeat domain 12	BC080825|Ankrd12|106585|ankyrin repeat domain 12	BC064777|Ankrd12|106585|ankyrin repeat domain 12	AK012645|Ankrd12|106585|ankyrin repeat domain 12	AK133715|Ankrd12|106585|ankyrin repeat domain 12	NM_001025572|Ankrd12|106585|ankyrin repeat domain 12	AK013457|Ankrd12|106585|ankyrin repeat domain 12
mm9_v1_chr19_-_19185685_19185685	0.976894	ACCCUGU	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr2_-_65405546_65405588	0.957206	ACCCUGU	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr7_-_135883942_135884024	0.847195	ACCCUGU	BC038342|Mcmbp|210711|MCM (minichromosome maintenance deficient) binding protein	NM_145955|Mcmbp|210711|MCM (minichromosome maintenance deficient) binding protein	BC025641|Mcmbp|210711|MCM (minichromosome maintenance deficient) binding protein	AK083385|Mcmbp|210711|MCM (minichromosome maintenance deficient) binding protein
mm9_v1_chr11_-_115885714_115885820	0.836744	ACCCUGU	BC092300|H3f3b|15081|H3 histone, family 3B	X13605|H3f3b|15081|H3 histone, family 3B	BC021768|H3f3b|15081|H3 histone, family 3B	BC092043|H3f3b|15081|H3 histone, family 3B	BC002052|H3f3b|15081|H3 histone, family 3B	AK169620|H3f3b|15081|H3 histone, family 3B	BC037730|H3f3b|15081|H3 histone, family 3B	AK167828|H3f3b|15081|H3 histone, family 3B	AK153239|H3f3b|15081|H3 histone, family 3B	AK159615|H3f3b|15081|H3 histone, family 3B	AK166605|H3f3b|15081|H3 histone, family 3B	AK168931|H3f3b|15081|H3 histone, family 3B	AK169042|H3f3b|15081|H3 histone, family 3B	AK044933|H3f3b|15081|H3 histone, family 3B	AK151451|H3f3b|15081|H3 histone, family 3B	AK153189|H3f3b|15081|H3 histone, family 3B	AK151274|H3f3b|15081|H3 histone, family 3B	AK151336|H3f3b|15081|H3 histone, family 3B	AK152026|H3f3b|15081|H3 histone, family 3B	AK153294|H3f3b|15081|H3 histone, family 3B	AK153371|H3f3b|15081|H3 histone, family 3B	AK159338|H3f3b|15081|H3 histone, family 3B	AK169226|H3f3b|15081|H3 histone, family 3B	AK146070|H3f3b|15081|H3 histone, family 3B	AK151658|H3f3b|15081|H3 histone, family 3B	AK151661|H3f3b|15081|H3 histone, family 3B	AK151869|H3f3b|15081|H3 histone, family 3B	AK152453|H3f3b|15081|H3 histone, family 3B	AK152455|H3f3b|15081|H3 histone, family 3B	AK152911|H3f3b|15081|H3 histone, family 3B	AK161675|H3f3b|15081|H3 histone, family 3B	AK162426|H3f3b|15081|H3 histone, family 3B	AK168698|H3f3b|15081|H3 histone, family 3B	AK169039|H3f3b|15081|H3 histone, family 3B	AK163244|H3f3b|15081|H3 histone, family 3B	AK002928|H3f3b|15081|H3 histone, family 3B	AK011431|H3f3b|15081|H3 histone, family 3B	AK159807|H3f3b|15081|H3 histone, family 3B	AK159850|H3f3b|15081|H3 histone, family 3B	AK135839|H3f3b|15081|H3 histone, family 3B	AK151222|H3f3b|15081|H3 histone, family 3B	AK152623|H3f3b|15081|H3 histone, family 3B	AK153530|H3f3b|15081|H3 histone, family 3B	NM_008211|H3f3b|15081|H3 histone, family 3B
mm9_v1_chr4_-_136512727_136512761	0.79798	ACCCUGU	NM_007939|Epha8|13842|Eph receptor A8	U72207|Epha8|13842|Eph receptor A8
mm9_v1_chr9_-_108551631_108551731	0.794333	ACCCUGU	AK165028|Arih2|23807|ariadne homolog 2 (Drosophila)	AK149936|Arih2|23807|ariadne homolog 2 (Drosophila)	BC051998|Arih2|23807|ariadne homolog 2 (Drosophila)	BC052422|Arih2|23807|ariadne homolog 2 (Drosophila)	NM_011790|Arih2|23807|ariadne homolog 2 (Drosophila)	AK011094|Arih2|23807|ariadne homolog 2 (Drosophila)	AK168055|Arih2|23807|ariadne homolog 2 (Drosophila)
mm9_v1_chr2_-_38640034_38640034	0.792815	ACCCUGU	NM_001159548|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	NM_001159549|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1
mm9_v1_chr6_+_92041408_92041534	0.776374	ACCCUGU	NM_011630|Nr2c2|22026|nuclear receptor subfamily 2, group C, member 2	AK157305|Nr2c2|22026|nuclear receptor subfamily 2, group C, member 2
mm9_v1_chr2_-_6805937_6806041	0.727027	ACCCUGU	AK042749|Celf2|14007|CUGBP, Elav-like family member 2	AK164112|Celf2|14007|CUGBP, Elav-like family member 2	AK052102|Celf2|14007|CUGBP, Elav-like family member 2	AK135166|Celf2|14007|CUGBP, Elav-like family member 2	BC026856|Celf2|14007|CUGBP, Elav-like family member 2	AF090697|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110228|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160293|Celf2|14007|CUGBP, Elav-like family member 2	NM_010160|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr2_+_109514856_109514856	0.693696	ACCCUGU	AY057908|Bdnf|12064|brain derived neurotrophic factor	EF125669|Bdnf|12064|brain derived neurotrophic factor	NM_007540|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr1_-_157820378_157820386	0.636156	ACCCUGU	AK044664|Cep350|74081|centrosomal protein 350	NM_001039184|Cep350|74081|centrosomal protein 350
mm9_v1_chr7_-_142129892_142130112	0.609387	ACCCUGU	BC158077|Fam196a|627214|family with sequence similarity 196, member A	BC158080|Fam196a|627214|family with sequence similarity 196, member A	AK046823|Fam196a|627214|family with sequence similarity 196, member A	AK046846|Fam196a|627214|family with sequence similarity 196, member A	AK140373|Fam196a|627214|family with sequence similarity 196, member A	NM_001143802|Fam196a|627214|family with sequence similarity 196, member A
mm9_v1_chrX_-_47150892_47150921	0.592993	ACCCUGU	AK030452|Igsf1|209268|immunoglobulin superfamily, member 1	BC089474|Igsf1|209268|immunoglobulin superfamily, member 1	AY227771|Igsf1|209268|immunoglobulin superfamily, member 1	AY227772|Igsf1|209268|immunoglobulin superfamily, member 1	BC100420|Igsf1|209268|immunoglobulin superfamily, member 1	NM_177591|Igsf1|209268|immunoglobulin superfamily, member 1	NM_177915|Igsf1|209268|immunoglobulin superfamily, member 1
mm9_v1_chr16_+_32332294_32332380	0.55869	ACCCUGU	NM_177633|Ubxn7|224111|UBX domain protein 7	AK147730|Ubxn7|224111|UBX domain protein 7	BC062904|Ubxn7|224111|UBX domain protein 7
mm9_v1_chr3_-_104315778_104315782	0.539379	ACCCUGU	AK036116|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2	NM_001025067|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chr6_+_90319485_90319663	0.538653	ACCCUGU	AK081005|Zxdc|80292|ZXD family zinc finger C	NM_030260|Zxdc|80292|ZXD family zinc finger C	NM_173002|Zxdc|80292|ZXD family zinc finger C	BC003332|Zxdc|80292|ZXD family zinc finger C	AK042190|Zxdc|80292|ZXD family zinc finger C	AK044529|Zxdc|80292|ZXD family zinc finger C	AK030287|Zxdc|80292|ZXD family zinc finger C	AK047538|Zxdc|80292|ZXD family zinc finger C	AK042392|Zxdc|80292|ZXD family zinc finger C	AK080307|Zxdc|80292|ZXD family zinc finger C	AK044429|Zxdc|80292|ZXD family zinc finger C	AK044948|Zxdc|80292|ZXD family zinc finger C	AK169517|Zxdc|80292|ZXD family zinc finger C	AK047079|Zxdc|80292|ZXD family zinc finger C	AK137347|Zxdc|80292|ZXD family zinc finger C	AK141613|Zxdc|80292|ZXD family zinc finger C
mm9_v1_chr4_+_21703416_21703444	0.52989	ACCCUGU	AK040660|Usp45|77593|ubiquitin specific petidase 45	AK162825|Usp45|77593|ubiquitin specific petidase 45	NM_152825|Usp45|77593|ubiquitin specific petidase 45	AK088073|Usp45|77593|ubiquitin specific petidase 45	BC027768|Usp45|77593|ubiquitin specific petidase 45
mm9_v1_chr15_+_84753817_84753857	0.524004	ACCCUGU	AK141750|Nup50|18141|nucleoporin 50	AK165581|Nup50|18141|nucleoporin 50	AK133562|Nup50|18141|nucleoporin 50	BC060234|Nup50|18141|nucleoporin 50	AK161713|Nup50|18141|nucleoporin 50	BC065102|Nup50|18141|nucleoporin 50	AK087706|Nup50|18141|nucleoporin 50	AK168888|Nup50|18141|nucleoporin 50	AK151947|Nup50|18141|nucleoporin 50	AK152309|Nup50|18141|nucleoporin 50	BC059239|Nup50|18141|nucleoporin 50	NM_016714|Nup50|18141|nucleoporin 50
mm9_v1_chr2_-_59963796_59963833	0.516122	ACCCUGU	NM_001001182|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK147737|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B
mm9_v1_chr11_+_93857338_93857584	0.501508	ACCCUGU	AK161623|Spag9|70834|sperm associated antigen 9	NM_027569|Spag9|70834|sperm associated antigen 9	AF327451|Spag9|70834|sperm associated antigen 9	AB047782|Spag9|70834|sperm associated antigen 9	FJ042496|Spag9|70834|sperm associated antigen 9	AK030165|Spag9|70834|sperm associated antigen 9
mm9_v1_chr14_+_120877548_120877707	0.49104	ACCCUGU	AK140318|Rap2a|76108|RAS related protein 2a	BC067194|Rap2a|76108|RAS related protein 2a	BC049084|Rap2a|76108|RAS related protein 2a	BC053003|Rap2a|76108|RAS related protein 2a	NM_029519|Rap2a|76108|RAS related protein 2a	AK018024|Rap2a|76108|RAS related protein 2a
mm9_v1_chr4_+_148919218_148919225	0.448693	ACCCUGU	AK003595|Ctnnbip1|67087|catenin beta interacting protein 1	NM_001141930|Ctnnbip1|67087|catenin beta interacting protein 1
mm9_v1_chr7_+_54051432_54051635	0.424239	ACCCUGU	NM_008186|Gtf2h1|14884|general transcription factor II H, polypeptide 1	AK005065|Gtf2h1|14884|general transcription factor II H, polypeptide 1	AK182163|Gtf2h1|14884|general transcription factor II H, polypeptide 1	AK185521|Gtf2h1|14884|general transcription factor II H, polypeptide 1
mm9_v1_chr6_-_126595818_126595818	0.419406	ACCCUGU	NM_010595|Kcna1|16485|potassium voltage-gated channel, shaker-related subfamily, member 1
mm9_v1_chr2_+_109532592_109532697	0.417503	ACCCUGU	AY057913|Bdnf|12064|brain derived neurotrophic factor	EF125673|Bdnf|12064|brain derived neurotrophic factor	NM_001048141|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr13_+_44826121_44826271	0.412918	ACCCUGU	D31967|Jarid2|16468|jumonji, AT rich interactive domain 2	BC052444|Jarid2|16468|jumonji, AT rich interactive domain 2	BC060695|Jarid2|16468|jumonji, AT rich interactive domain 2	NM_021878|Jarid2|16468|jumonji, AT rich interactive domain 2
mm9_v1_chr14_-_21613162_21613325	0.385274	ACCCUGU	AF395884|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK154764|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC025597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK078311|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC019162|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK081969|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK031213|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK054406|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039138|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039139|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_178597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma
mm9_v1_chr4_+_148892231_148892432	0.383263	ACCCUGU	AK036181|Ctnnbip1|67087|catenin beta interacting protein 1	NM_023465|Ctnnbip1|67087|catenin beta interacting protein 1	AK048258|Ctnnbip1|67087|catenin beta interacting protein 1	BC038253|Ctnnbip1|67087|catenin beta interacting protein 1	BC018436|Ctnnbip1|67087|catenin beta interacting protein 1	AB021261|Ctnnbip1|67087|catenin beta interacting protein 1
mm9_v1_chr16_-_23988680_23988725	0.333008	ACCCUGU	D38377|Bcl6|12053|B-cell leukemia/lymphoma 6	BC052315|Bcl6|12053|B-cell leukemia/lymphoma 6	NM_009744|Bcl6|12053|B-cell leukemia/lymphoma 6	AK039228|Bcl6|12053|B-cell leukemia/lymphoma 6	AK036975|Bcl6|12053|B-cell leukemia/lymphoma 6	AK151229|Bcl6|12053|B-cell leukemia/lymphoma 6
mm9_v1_chr2_-_168427037_168427156	0.319825	ACCCUGU	EU887581|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887587|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887593|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887599|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	AK083119|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887583|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887585|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887589|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887591|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887595|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887597|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887601|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887603|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	NM_001037178|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	AK044489|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2
mm9_v1_chr14_+_49065971_49066097	0.315082	ACCCUGU	AK141246|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	NM_172600|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK032809|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK054494|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK040456|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK153648|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK038175|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene
mm9_v1_chr5_+_135663096_135663289	0.293125	ACCCUGU	AK017894|Baz1b|22385|bromodomain adjacent to zinc finger domain, 1B	NM_011714|Baz1b|22385|bromodomain adjacent to zinc finger domain, 1B	AF084480|Baz1b|22385|bromodomain adjacent to zinc finger domain, 1B	BC141399|Baz1b|22385|bromodomain adjacent to zinc finger domain, 1B	BC171975|Baz1b|22385|bromodomain adjacent to zinc finger domain, 1B
mm9_v1_chr14_+_29831283_29831689	0.272589	ACCCUGU	NM_176920|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	AK044492|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	AK138618|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC099587|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC132594|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC145990|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1
mm9_v1_chr2_+_32462471_32462603	0.227675	ACCCUGU	NM_001025310|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	NM_016973|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	AK157562|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	AK159158|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	BC036985|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	AB035123|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	BC022924|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
mm9_v1_chr2_+_32455168_32455228	0.222403	ACCCUGU	NM_001025311|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
mm9_v1_chr1_-_138856866_138857085	0.219106	ACCCUGU	AB221629|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	BC137845|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	M81385|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	NM_030676|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2
mm9_v1_chr2_+_109533719_109533771	0.167721	ACCCUGU	AY057914|Bdnf|12064|brain derived neurotrophic factor	EF125674|Bdnf|12064|brain derived neurotrophic factor	NM_001048142|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr16_+_33251485_33251551	0.109413	ACCCUGU	AK007706|Snx4|69150|sorting nexin 4	AK030657|Snx4|69150|sorting nexin 4	AK031368|Snx4|69150|sorting nexin 4	AK135356|Snx4|69150|sorting nexin 4	BC016599|Snx4|69150|sorting nexin 4	NM_080557|Snx4|69150|sorting nexin 4	BC006043|Snx4|69150|sorting nexin 4
mm9_v1_chr13_-_30077931_30077931	0.0788354	ACCCUGU	AK133828|E2f3|13557|E2F transcription factor 3	NM_010093|E2f3|13557|E2F transcription factor 3
mm9_v1_chr5_-_125659422_125659602	0.064257	ACCCUGU	AF125671|Ncor2|20602|nuclear receptor co-repressor 2	BC057218|Ncor2|20602|nuclear receptor co-repressor 2	AK147394|Ncor2|20602|nuclear receptor co-repressor 2	AF113002|Ncor2|20602|nuclear receptor co-repressor 2	NM_011424|Ncor2|20602|nuclear receptor co-repressor 2
mm9_v1_chr4_-_132478424_132478474	0.0640301	ACCCUGU	BC008163|Fam76a|230789|family with sequence similarity 76, member A	AK154575|Fam76a|230789|family with sequence similarity 76, member A	NM_001163792|Fam76a|230789|family with sequence similarity 76, member A	NM_145553|Fam76a|230789|family with sequence similarity 76, member A	AK038831|Fam76a|230789|family with sequence similarity 76, member A
mm9_v1_chr11_+_79153388_79153393	0.0429546	ACCCUGU	AK085050|Nf1|18015|neurofibromatosis 1	NM_010897|Nf1|18015|neurofibromatosis 1
mm9_v1_chr5_+_120284671_120284671	0.0224303	ACCCUGU	BC090639|Tbx5|21388|T-box 5	NM_011537|Tbx5|21388|T-box 5
mm9_v1_chr1_-_138850206_138850206	0.0130181	ACCCUGU	DQ133942|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	NM_001159769|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2
mm9_v1_chr11_+_72503487_72503520	0.0107595	ACCCUGU	BC139231|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	BC145583|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	NM_009671|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB011370|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB098329|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AK134008|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1
