mm9_v1_chr11_+_98769464_98769464	14.1975	AGCUGCC	AJ009559|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AJ223087|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	NM_011799|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)
mm9_v1_chr11_+_98769162_98769202	13.9495	AGCUGCC	AK162669|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK075975|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK085020|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK012192|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	BC052434|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	NM_001025779|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)
mm9_v1_chr4_+_140257340_140257464	11.9264	AGCUGCC	NM_173867|Rcc2|108911|regulator of chromosome condensation 2	BC060624|Rcc2|108911|regulator of chromosome condensation 2	AK076040|Rcc2|108911|regulator of chromosome condensation 2	BC086666|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr10_+_96079634_96079769	11.2837	AGCUGCC	NM_007569|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK162764|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK149547|Btg1|12226|B-cell translocation gene 1, anti-proliferative	BC018309|Btg1|12226|B-cell translocation gene 1, anti-proliferative	L16846|Btg1|12226|B-cell translocation gene 1, anti-proliferative	BC006834|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK181728|Btg1|12226|B-cell translocation gene 1, anti-proliferative
mm9_v1_chr6_-_83267540_83267619	10.558	AGCUGCC	J04627|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK076801|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK076019|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK159680|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK166262|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	BC019511|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK152249|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK165840|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	NM_008638|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase
mm9_v1_chr16_-_89818596_89818596	9.38444	AGCUGCC	AK136856|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	NM_001145887|Tiam1|21844|T-cell lymphoma invasion and metastasis 1
mm9_v1_chr19_-_41922577_41922621	9.09602	AGCUGCC	BC034214|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	BC085510|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	AK081171|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	NM_177603|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2
mm9_v1_chr4_+_11083585_11083598	8.1459	AGCUGCC	AJ131776|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AY034611|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AY034612|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	NM_021897|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AK054214|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AK142321|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1
mm9_v1_chr9_+_100978450_100978485	7.89865	AGCUGCC	NM_001100451|Msl2|77853|male-specific lethal 2 homolog (Drosophila)	BC070432|Msl2|77853|male-specific lethal 2 homolog (Drosophila)
mm9_v1_chr1_-_74590801_74590859	7.64089	AGCUGCC	BC139091|Usp37|319651|ubiquitin specific peptidase 37	AK133317|Usp37|319651|ubiquitin specific peptidase 37	AK030013|Usp37|319651|ubiquitin specific peptidase 37	NM_176972|Usp37|319651|ubiquitin specific peptidase 37
mm9_v1_chr9_+_57556346_57556409	7.60378	AGCUGCC	AK146804|Edc3|353190|enhancer of mRNA decapping 3 homolog (S. cerevisiae)	AK140127|Edc3|353190|enhancer of mRNA decapping 3 homolog (S. cerevisiae)	AK168118|Edc3|353190|enhancer of mRNA decapping 3 homolog (S. cerevisiae)	AK090005|Edc3|353190|enhancer of mRNA decapping 3 homolog (S. cerevisiae)	AK166286|Edc3|353190|enhancer of mRNA decapping 3 homolog (S. cerevisiae)	NM_153799|Edc3|353190|enhancer of mRNA decapping 3 homolog (S. cerevisiae)	BC031725|Edc3|353190|enhancer of mRNA decapping 3 homolog (S. cerevisiae)	BC033484|Edc3|353190|enhancer of mRNA decapping 3 homolog (S. cerevisiae)
mm9_v1_chr5_+_115224911_115225148	7.43141	AGCUGCC	AK039432|Ankrd13a|68420|ankyrin repeat domain 13a	AK156539|Ankrd13a|68420|ankyrin repeat domain 13a	BC049187|Ankrd13a|68420|ankyrin repeat domain 13a	BC061692|Ankrd13a|68420|ankyrin repeat domain 13a	NM_026718|Ankrd13a|68420|ankyrin repeat domain 13a
mm9_v1_chrX_+_139115908_139116076	7.36893	AGCUGCC	AK166488|Tmem164|209497|transmembrane protein 164	BC056470|Tmem164|209497|transmembrane protein 164	NM_177592|Tmem164|209497|transmembrane protein 164
mm9_v1_chr2_+_36085945_36085997	6.89561	AGCUGCC	AK159907|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	NM_008969|Ptgs1|19224|prostaglandin-endoperoxide synthase 1
mm9_v1_chr13_+_5860701_5860744	6.85469	AGCUGCC	NM_011803|Klf6|23849|Kruppel-like factor 6	AY027436|Klf6|23849|Kruppel-like factor 6
mm9_v1_chr19_+_32832002_32832163	6.8089	AGCUGCC	NM_008960|Pten|19211|phosphatase and tensin homolog	AK164302|Pten|19211|phosphatase and tensin homolog	AK088717|Pten|19211|phosphatase and tensin homolog	AK076980|Pten|19211|phosphatase and tensin homolog
mm9_v1_chr12_+_112278008_112278010	6.49993	AGCUGCC	NM_198023|Rcor1|217864|REST corepressor 1	BC042731|Rcor1|217864|REST corepressor 1
mm9_v1_chr10_-_59414516_59414582	6.04311	AGCUGCC	BC131992|Ddit4|74747|DNA-damage-inducible transcript 4	BC132645|Ddit4|74747|DNA-damage-inducible transcript 4	BC145370|Ddit4|74747|DNA-damage-inducible transcript 4	AK017926|Ddit4|74747|DNA-damage-inducible transcript 4	NM_029083|Ddit4|74747|DNA-damage-inducible transcript 4	AK081046|Ddit4|74747|DNA-damage-inducible transcript 4
mm9_v1_chr6_-_86619001_86619180	5.83437	AGCUGCC	CT010233|Mxd1|17119|MAX dimerization protein 1	L38926|Mxd1|17119|MAX dimerization protein 1	X83106|Mxd1|17119|MAX dimerization protein 1	BC034860|Mxd1|17119|MAX dimerization protein 1	U20614|Mxd1|17119|MAX dimerization protein 1	AK036504|Mxd1|17119|MAX dimerization protein 1	AK151882|Mxd1|17119|MAX dimerization protein 1	AK153303|Mxd1|17119|MAX dimerization protein 1	AK151114|Mxd1|17119|MAX dimerization protein 1	AK151014|Mxd1|17119|MAX dimerization protein 1	AK151305|Mxd1|17119|MAX dimerization protein 1	NM_010751|Mxd1|17119|MAX dimerization protein 1
mm9_v1_chr11_-_115885714_115885820	5.72338	AGCUGCC	BC092300|H3f3b|15081|H3 histone, family 3B	X13605|H3f3b|15081|H3 histone, family 3B	BC021768|H3f3b|15081|H3 histone, family 3B	BC092043|H3f3b|15081|H3 histone, family 3B	BC002052|H3f3b|15081|H3 histone, family 3B	AK169620|H3f3b|15081|H3 histone, family 3B	BC037730|H3f3b|15081|H3 histone, family 3B	AK167828|H3f3b|15081|H3 histone, family 3B	AK153239|H3f3b|15081|H3 histone, family 3B	AK159615|H3f3b|15081|H3 histone, family 3B	AK166605|H3f3b|15081|H3 histone, family 3B	AK168931|H3f3b|15081|H3 histone, family 3B	AK169042|H3f3b|15081|H3 histone, family 3B	AK044933|H3f3b|15081|H3 histone, family 3B	AK151451|H3f3b|15081|H3 histone, family 3B	AK153189|H3f3b|15081|H3 histone, family 3B	AK151274|H3f3b|15081|H3 histone, family 3B	AK151336|H3f3b|15081|H3 histone, family 3B	AK152026|H3f3b|15081|H3 histone, family 3B	AK153294|H3f3b|15081|H3 histone, family 3B	AK153371|H3f3b|15081|H3 histone, family 3B	AK159338|H3f3b|15081|H3 histone, family 3B	AK169226|H3f3b|15081|H3 histone, family 3B	AK146070|H3f3b|15081|H3 histone, family 3B	AK151658|H3f3b|15081|H3 histone, family 3B	AK151661|H3f3b|15081|H3 histone, family 3B	AK151869|H3f3b|15081|H3 histone, family 3B	AK152453|H3f3b|15081|H3 histone, family 3B	AK152455|H3f3b|15081|H3 histone, family 3B	AK152911|H3f3b|15081|H3 histone, family 3B	AK161675|H3f3b|15081|H3 histone, family 3B	AK162426|H3f3b|15081|H3 histone, family 3B	AK168698|H3f3b|15081|H3 histone, family 3B	AK169039|H3f3b|15081|H3 histone, family 3B	AK163244|H3f3b|15081|H3 histone, family 3B	AK002928|H3f3b|15081|H3 histone, family 3B	AK011431|H3f3b|15081|H3 histone, family 3B	AK159807|H3f3b|15081|H3 histone, family 3B	AK159850|H3f3b|15081|H3 histone, family 3B	AK135839|H3f3b|15081|H3 histone, family 3B	AK151222|H3f3b|15081|H3 histone, family 3B	AK152623|H3f3b|15081|H3 histone, family 3B	AK153530|H3f3b|15081|H3 histone, family 3B	NM_008211|H3f3b|15081|H3 histone, family 3B
mm9_v1_chr4_-_133843139_133843188	5.68305	AGCUGCC	AK053750|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK157013|Pdik1l|230809|PDLIM1 interacting kinase 1 like	BC027088|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141566|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK139413|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141823|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK162350|Pdik1l|230809|PDLIM1 interacting kinase 1 like	NM_001163794|Pdik1l|230809|PDLIM1 interacting kinase 1 like
mm9_v1_chr11_+_51433236_51433386	5.54231	AGCUGCC	AK008766|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	AK019134|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	NM_026631|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	BC024944|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	AK007340|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	AK193298|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	AK199159|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)
mm9_v1_chr16_-_89960987_89961071	5.49654	AGCUGCC	AK017465|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	NM_009384|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	U05245|Tiam1|21844|T-cell lymphoma invasion and metastasis 1
mm9_v1_chr9_-_77391865_77391878	5.48159	AGCUGCC	AK082721|Lrrc1|214345|leucine rich repeat containing 1	NM_172528|Lrrc1|214345|leucine rich repeat containing 1	AK053293|Lrrc1|214345|leucine rich repeat containing 1
mm9_v1_chr15_+_80541675_80541764	5.45316	AGCUGCC	AK048628|Tnrc6b|213988|trinucleotide repeat containing 6b	NM_144812|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr4_-_133843746_133843812	5.32204	AGCUGCC	BC058514|Pdik1l|230809|PDLIM1 interacting kinase 1 like	NM_146156|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK164975|Pdik1l|230809|PDLIM1 interacting kinase 1 like
mm9_v1_chr13_+_44826121_44826271	5.28499	AGCUGCC	D31967|Jarid2|16468|jumonji, AT rich interactive domain 2	BC052444|Jarid2|16468|jumonji, AT rich interactive domain 2	BC060695|Jarid2|16468|jumonji, AT rich interactive domain 2	NM_021878|Jarid2|16468|jumonji, AT rich interactive domain 2
mm9_v1_chr1_-_145851257_145851282	5.17498	AGCUGCC	AF432916|Rgs2|19735|regulator of G-protein signaling 2	BC023001|Rgs2|19735|regulator of G-protein signaling 2	AF215668|Rgs2|19735|regulator of G-protein signaling 2	U67187|Rgs2|19735|regulator of G-protein signaling 2	AK029310|Rgs2|19735|regulator of G-protein signaling 2	AK031603|Rgs2|19735|regulator of G-protein signaling 2	AK077922|Rgs2|19735|regulator of G-protein signaling 2	AK162276|Rgs2|19735|regulator of G-protein signaling 2	NM_009061|Rgs2|19735|regulator of G-protein signaling 2
mm9_v1_chr5_+_108494692_108494781	5.11	AGCUGCC	AK031409|Mtf2|17765|metal response element binding transcription factor 2	BC024889|Mtf2|17765|metal response element binding transcription factor 2	AK032798|Mtf2|17765|metal response element binding transcription factor 2	AK032819|Mtf2|17765|metal response element binding transcription factor 2	AK137539|Mtf2|17765|metal response element binding transcription factor 2	BC050826|Mtf2|17765|metal response element binding transcription factor 2	AK030752|Mtf2|17765|metal response element binding transcription factor 2	AB050541|Mtf2|17765|metal response element binding transcription factor 2	BC092237|Mtf2|17765|metal response element binding transcription factor 2	NM_013827|Mtf2|17765|metal response element binding transcription factor 2	BC100340|Mtf2|17765|metal response element binding transcription factor 2	BC029076|Mtf2|17765|metal response element binding transcription factor 2
mm9_v1_chr6_-_98978185_98978383	5.09236	AGCUGCC	AK077062|Foxp1|108655|forkhead box P1	AK144920|Foxp1|108655|forkhead box P1	NM_001197322|Foxp1|108655|forkhead box P1
mm9_v1_chr15_+_102236709_102236810	5.07647	AGCUGCC	EF200005|Sp1|20683|trans-acting transcription factor 1	NM_013672|Sp1|20683|trans-acting transcription factor 1	AF022363|Sp1|20683|trans-acting transcription factor 1	S79832|Sp1|20683|trans-acting transcription factor 1	AF062566|Sp1|20683|trans-acting transcription factor 1
mm9_v1_chr10_-_128082881_128083048	5.04078	AGCUGCC	AK089522|Ikzf4|22781|IKAROS family zinc finger 4	AK170453|Ikzf4|22781|IKAROS family zinc finger 4	NM_011772|Ikzf4|22781|IKAROS family zinc finger 4
mm9_v1_chr5_+_64551449_64551546	4.96763	AGCUGCC	AK080526|Tbc1d1|57915|TBC1 domain family, member 1	NM_019636|Tbc1d1|57915|TBC1 domain family, member 1	AK159256|Tbc1d1|57915|TBC1 domain family, member 1	U33005|Tbc1d1|57915|TBC1 domain family, member 1
mm9_v1_chr11_-_69227176_69227176	4.94859	AGCUGCC	NM_001017426|Kdm6b|216850|KDM1 lysine (K)-specific demethylase 6B
mm9_v1_chr13_+_55471092_55471131	4.93434	AGCUGCC	NM_016758|Rgs14|51791|regulator of G-protein signaling 14	BC030321|Rgs14|51791|regulator of G-protein signaling 14
mm9_v1_chr2_+_90585526_90585673	4.84783	AGCUGCC	NM_018828|Fnbp4|55935|formin binding protein 4	U40750|Fnbp4|55935|formin binding protein 4
mm9_v1_chr15_+_78757148_78757164	4.82714	AGCUGCC	NM_008495|Lgals1|16852|lectin, galactose binding, soluble 1	X66532|Lgals1|16852|lectin, galactose binding, soluble 1	AK004298|Lgals1|16852|lectin, galactose binding, soluble 1
mm9_v1_chr4_-_149050154_149050197	4.81814	AGCUGCC	AK171025|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK011923|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164051|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm9_v1_chr16_-_89974943_89974943	4.79452	AGCUGCC	AK147392|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	NM_001145886|Tiam1|21844|T-cell lymphoma invasion and metastasis 1
mm9_v1_chr6_-_99216494_99216530	4.73086	AGCUGCC	BC064764|Foxp1|108655|forkhead box P1	AK171994|Foxp1|108655|forkhead box P1	BC065386|Foxp1|108655|forkhead box P1	NM_001197321|Foxp1|108655|forkhead box P1	AK040800|Foxp1|108655|forkhead box P1
mm9_v1_chr6_-_71582871_71582939	4.70744	AGCUGCC	BC032256|Kdm3a|104263|lysine (K)-specific demethylase 3A	AK129204|Kdm3a|104263|lysine (K)-specific demethylase 3A	NM_001038695|Kdm3a|104263|lysine (K)-specific demethylase 3A
mm9_v1_chr16_-_8738377_8738512	4.69617	AGCUGCC	AF548565|Usp7|252870|ubiquitin specific peptidase 7	NM_001003918|Usp7|252870|ubiquitin specific peptidase 7	BC046963|Usp7|252870|ubiquitin specific peptidase 7
mm9_v1_chr4_+_140462254_140462341	4.66552	AGCUGCC	NM_008812|Padi2|18600|peptidyl arginine deiminase, type II	AK158382|Padi2|18600|peptidyl arginine deiminase, type II	AK171275|Padi2|18600|peptidyl arginine deiminase, type II	AK148156|Padi2|18600|peptidyl arginine deiminase, type II	AK154814|Padi2|18600|peptidyl arginine deiminase, type II	BC049947|Padi2|18600|peptidyl arginine deiminase, type II	BC040350|Padi2|18600|peptidyl arginine deiminase, type II	D16580|Padi2|18600|peptidyl arginine deiminase, type II
mm9_v1_chr1_+_64579358_64579513	4.52549	AGCUGCC	NM_001037726|Creb1|12912|cAMP responsive element binding protein 1	NM_009952|Creb1|12912|cAMP responsive element binding protein 1	NM_133828|Creb1|12912|cAMP responsive element binding protein 1	AK079223|Creb1|12912|cAMP responsive element binding protein 1	X92497|Creb1|12912|cAMP responsive element binding protein 1	AK042595|Creb1|12912|cAMP responsive element binding protein 1	BC021649|Creb1|12912|cAMP responsive element binding protein 1	M95106|Creb1|12912|cAMP responsive element binding protein 1	AF448507|Creb1|12912|cAMP responsive element binding protein 1
mm9_v1_chr15_+_80629020_80629144	4.52246	AGCUGCC	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr4_-_149072755_149072816	4.44045	AGCUGCC	BC035203|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164049|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164050|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_008840|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm9_v1_chrX_+_39503858_39503966	4.38901	AGCUGCC	AK146718|Stag2|20843|stromal antigen 2	AK168899|Stag2|20843|stromal antigen 2	NM_021465|Stag2|20843|stromal antigen 2
mm9_v1_chr4_-_149037392_149037424	4.27683	AGCUGCC	CT010349|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	U86587|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164052|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm9_v1_chr2_-_153067043_153067211	4.11834	AGCUGCC	BC037664|Plagl2|54711|pleiomorphic adenoma gene-like 2	BC078453|Plagl2|54711|pleiomorphic adenoma gene-like 2	NM_018807|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK040626|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK133833|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK141713|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK150243|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK129087|Plagl2|54711|pleiomorphic adenoma gene-like 2
mm9_v1_chr1_+_154613622_154613679	4.09814	AGCUGCC	NM_026369|Arpc5|67771|actin related protein 2/3 complex, subunit 5
mm9_v1_chr6_-_99385338_99385338	4.08015	AGCUGCC	NM_053202|Foxp1|108655|forkhead box P1
mm9_v1_chr5_-_141124884_141125029	4.06187	AGCUGCC	AK052340|Ttyh3|78339|tweety homolog 3 (Drosophila)	BC059083|Ttyh3|78339|tweety homolog 3 (Drosophila)	BC062917|Ttyh3|78339|tweety homolog 3 (Drosophila)	NM_175274|Ttyh3|78339|tweety homolog 3 (Drosophila)
mm9_v1_chr18_-_6490848_6490911	4.05978	AGCUGCC	AK040254|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	NM_027497|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	BC059708|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)
mm9_v1_chr7_+_106683983_106683997	3.98766	AGCUGCC	AK147508|Arrb1|109689|arrestin, beta 1	NM_177231|Arrb1|109689|arrestin, beta 1	NM_178220|Arrb1|109689|arrestin, beta 1
mm9_v1_chr6_-_71582562_71582698	3.9791	AGCUGCC	BC059264|Kdm3a|104263|lysine (K)-specific demethylase 3A	AK144825|Kdm3a|104263|lysine (K)-specific demethylase 3A	NM_173001|Kdm3a|104263|lysine (K)-specific demethylase 3A
mm9_v1_chr9_-_77392505_77392711	3.96744	AGCUGCC	BC087542|Lrrc1|214345|leucine rich repeat containing 1	AK079854|Lrrc1|214345|leucine rich repeat containing 1	BC046591|Lrrc1|214345|leucine rich repeat containing 1	AK051043|Lrrc1|214345|leucine rich repeat containing 1	AK147075|Lrrc1|214345|leucine rich repeat containing 1	NM_001146048|Lrrc1|214345|leucine rich repeat containing 1	AK220166|Lrrc1|214345|leucine rich repeat containing 1
mm9_v1_chr3_+_60305108_60305212	3.89262	AGCUGCC	AK162039|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK149405|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AB093240|Mbnl1|56758|muscleblind-like 1 (Drosophila)	NM_020007|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK088871|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK153848|Mbnl1|56758|muscleblind-like 1 (Drosophila)	BC060031|Mbnl1|56758|muscleblind-like 1 (Drosophila)	BC096600|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr7_+_134628622_134628734	3.83277	AGCUGCC	NM_010183|Fbrs|14123|fibrosin
mm9_v1_chr12_+_84973146_84973375	3.83018	AGCUGCC	NM_027349|Rbm25|67039|RNA binding motif protein 25	AK011403|Rbm25|67039|RNA binding motif protein 25	AK164367|Rbm25|67039|RNA binding motif protein 25	AK151910|Rbm25|67039|RNA binding motif protein 25	AK144341|AA645497|100499479|expressed sequence AA645497
mm9_v1_chr10_-_62801726_62801784	3.74145	AGCUGCC	AK140330|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	BC152314|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159590|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AY377984|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AF214646|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_019812|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AK144203|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159589|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)
mm9_v1_chr11_+_95198329_95198359	3.71276	AGCUGCC	AK077747|Fam117a|215512|family with sequence similarity 117, memberA	AK143632|Fam117a|215512|family with sequence similarity 117, memberA	AK165378|Fam117a|215512|family with sequence similarity 117, memberA	AK167417|Fam117a|215512|family with sequence similarity 117, memberA	NM_172543|Fam117a|215512|family with sequence similarity 117, memberA	BC055690|Fam117a|215512|family with sequence similarity 117, memberA
mm9_v1_chr15_+_102038697_102038697	3.68263	AGCUGCC	BC030410|Zfp740|68744|zinc finger protein 740	NM_153194|Zfp740|68744|zinc finger protein 740
mm9_v1_chr17_+_29230715_29230763	3.58721	AGCUGCC	AK139306|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)	AK149910|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)	AK170467|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)	NM_007669|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)	AK007630|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)	AK089093|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)	U24173|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)	BC002043|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)
mm9_v1_chr4_+_134676559_134676571	3.53182	AGCUGCC	NM_019732|Runx3|12399|runt related transcription factor 3	AK155436|Runx3|12399|runt related transcription factor 3	AK155802|Runx3|12399|runt related transcription factor 3
mm9_v1_chr3_-_29912113_29912128	3.50448	AGCUGCC	AK085548|Mecom|14013|MDS1 and EVI1 complex locus	NM_007963|Mecom|14013|MDS1 and EVI1 complex locus
mm9_v1_chr8_+_23970006_23970020	3.49721	AGCUGCC	AK028058|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK082463|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	NM_001081149|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK039615|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK036885|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK054322|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK132474|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK143408|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3
mm9_v1_chr12_+_3806955_3807159	3.4721	AGCUGCC	NM_007872|Dnmt3a|13435|DNA methyltransferase 3A	AF503867|Dnmt3a|13435|DNA methyltransferase 3A	AK090132|Dnmt3a|13435|DNA methyltransferase 3A	AK147676|Dnmt3a|13435|DNA methyltransferase 3A	BC007466|Dnmt3a|13435|DNA methyltransferase 3A	AF068625|Dnmt3a|13435|DNA methyltransferase 3A	AK147263|Dnmt3a|13435|DNA methyltransferase 3A	AK147627|Dnmt3a|13435|DNA methyltransferase 3A	AK147642|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr9_+_109778051_109778082	3.42996	AGCUGCC	AK077991|Cdc25a|12530|cell division cycle 25 homolog A (S. pombe)	NM_007658|Cdc25a|12530|cell division cycle 25 homolog A (S. pombe)
mm9_v1_chr3_-_107135939_107136206	3.41663	AGCUGCC	BC080828|Rbm15|229700|RNA binding motif protein 15	AK048987|Rbm15|229700|RNA binding motif protein 15	BC051409|Rbm15|229700|RNA binding motif protein 15	AK168242|Rbm15|229700|RNA binding motif protein 15	AK166271|Rbm15|229700|RNA binding motif protein 15	BC057038|Rbm15|229700|RNA binding motif protein 15	AK220162|Rbm15|229700|RNA binding motif protein 15	AK168936|Rbm15|229700|RNA binding motif protein 15	BC120590|Rbm15|229700|RNA binding motif protein 15	BC137741|Rbm15|229700|RNA binding motif protein 15	NM_001045807|Rbm15|229700|RNA binding motif protein 15
mm9_v1_chr2_-_33743465_33743465	3.37476	AGCUGCC	BC059907|Fam125b|72543|family with sequence similarity 125, member B	NM_175184|Fam125b|72543|family with sequence similarity 125, member B
mm9_v1_chrX_+_39502588_39502859	3.37376	AGCUGCC	NM_001077712|Stag2|20843|stromal antigen 2	AK050415|Stag2|20843|stromal antigen 2	AK077318|Stag2|20843|stromal antigen 2	AK020968|Stag2|20843|stromal antigen 2	AK020316|Stag2|20843|stromal antigen 2
mm9_v1_chr18_+_36823713_36823835	3.36688	AGCUGCC	BC061242|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3	NM_201256|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3	BC111107|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3	BC038258|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3	AY226182|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3
mm9_v1_chr4_-_154596628_154596643	3.34307	AGCUGCC	AF435852|Ski|20481|ski sarcoma viral oncogene homolog (avian)	BC068305|Ski|20481|ski sarcoma viral oncogene homolog (avian)	NM_011385|Ski|20481|ski sarcoma viral oncogene homolog (avian)
mm9_v1_chr4_-_149075697_149075737	3.32084	AGCUGCC	AK040867|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK153304|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK155835|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK169494|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001029837|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm9_v1_chr12_+_3891743_3891823	3.28312	AGCUGCC	AF480164|Dnmt3a|13435|DNA methyltransferase 3A	NM_153743|Dnmt3a|13435|DNA methyltransferase 3A	AK157792|Dnmt3a|13435|DNA methyltransferase 3A	AK077792|Dnmt3a|13435|DNA methyltransferase 3A	AK136170|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr14_+_56503783_56503825	3.25924	AGCUGCC	AK136301|Khnyn|219094|KH and NYN domain containing	AK033704|Khnyn|219094|KH and NYN domain containing	NM_027143|Khnyn|219094|KH and NYN domain containing	AK047054|Khnyn|219094|KH and NYN domain containing	BC116260|Khnyn|219094|KH and NYN domain containing	BC116261|Khnyn|219094|KH and NYN domain containing
mm9_v1_chr18_-_6516073_6516084	3.24732	AGCUGCC	AK148194|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	AF079765|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	NM_007935|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)
mm9_v1_chr3_+_102862151_102862295	3.22941	AGCUGCC	X13664|Nras|18176|neuroblastoma ras oncogene	NM_010937|Nras|18176|neuroblastoma ras oncogene	AK011704|Nras|18176|neuroblastoma ras oncogene	AK165960|Nras|18176|neuroblastoma ras oncogene	AK150357|Nras|18176|neuroblastoma ras oncogene	BC058755|Nras|18176|neuroblastoma ras oncogene	BC014704|Nras|18176|neuroblastoma ras oncogene	BC051443|Nras|18176|neuroblastoma ras oncogene
mm9_v1_chr14_+_22319075_22319102	3.12533	AGCUGCC	AK052307|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4	NM_017479|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4	AF222800|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4
mm9_v1_chr1_+_161974503_161974570	3.11327	AGCUGCC	NM_001162896|4930523C07Rik|67647|RIKEN cDNA 4930523C07 gene	AK132698|4930523C07Rik|67647|RIKEN cDNA 4930523C07 gene	AK035814|4930523C07Rik|67647|RIKEN cDNA 4930523C07 gene	AK015875|4930523C07Rik|67647|RIKEN cDNA 4930523C07 gene
mm9_v1_chr10_-_94878845_94878845	3.03151	AGCUGCC	NM_001168655|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr13_-_54789148_54789168	3.01951	AGCUGCC	AK147349|Rnf44|105239|ring finger protein 44	NM_001146025|Rnf44|105239|ring finger protein 44	NM_001146026|Rnf44|105239|ring finger protein 44	NM_134064|Rnf44|105239|ring finger protein 44
mm9_v1_chr2_-_28771940_28771959	2.99819	AGCUGCC	NM_019446|Barhl1|54422|BarH-like 1 (Drosophila)	AB043980|Barhl1|54422|BarH-like 1 (Drosophila)	BC055731|Barhl1|54422|BarH-like 1 (Drosophila)	NM_001164186|Barhl1|54422|BarH-like 1 (Drosophila)
mm9_v1_chr3_+_84756090_84756352	2.99101	AGCUGCC	AF391192|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_080428|Fbxw7|50754|F-box and WD-40 domain protein 7	AF427101|Fbxw7|50754|F-box and WD-40 domain protein 7	BC131648|Fbxw7|50754|F-box and WD-40 domain protein 7	AB221593|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr2_+_24240916_24240916	2.88984	AGCUGCC	BC068231|Psd4|215632|pleckstrin and Sec7 domain containing 4	NM_177611|Psd4|215632|pleckstrin and Sec7 domain containing 4
mm9_v1_chr2_+_112219335_112219462	2.86273	AGCUGCC	AK036861|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	NM_024254|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK168639|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK049599|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK151464|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK010654|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK152570|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC003216|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC012402|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC080661|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK162183|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene
mm9_v1_chr14_+_35487052_35487113	2.85381	AGCUGCC	AK046038|Wapal|218914|wings apart-like homolog (Drosophila)	AK129105|Wapal|218914|wings apart-like homolog (Drosophila)	NM_001004436|Wapal|218914|wings apart-like homolog (Drosophila)
mm9_v1_chr7_+_107641853_107641862	2.78436	AGCUGCC	NM_011671|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)
mm9_v1_chr15_+_81416643_81416789	2.75545	AGCUGCC	NM_177821|Ep300|328572|E1A binding protein p300	AK042627|Ep300|328572|E1A binding protein p300	BC144976|Ep300|328572|E1A binding protein p300	BC150681|Ep300|328572|E1A binding protein p300
mm9_v1_chr9_-_71011053_71011095	2.7377	AGCUGCC	BC024105|Aqp9|64008|aquaporin 9	AK050042|Aqp9|64008|aquaporin 9	NM_022026|Aqp9|64008|aquaporin 9
mm9_v1_chr10_-_62342761_62342761	2.70698	AGCUGCC	GU079948|Tet1|52463|tet oncogene 1	NM_027384|Tet1|52463|tet oncogene 1
mm9_v1_chr3_-_116126932_116126949	2.6757	AGCUGCC	AK043956|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK052560|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK142294|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001080818|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001173553|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)
mm9_v1_chr4_-_44181148_44181210	2.67152	AGCUGCC	AK044324|Rnf38|73469|ring finger protein 38	NM_001038993|Rnf38|73469|ring finger protein 38	AK147608|Rnf38|73469|ring finger protein 38
mm9_v1_chr5_+_30559138_30559249	2.64937	AGCUGCC	NM_027652|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK040494|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK079325|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK083973|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK140416|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC106097|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK048011|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK014530|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC115783|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC117551|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK122544|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK040745|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
mm9_v1_chr4_+_132925684_132925804	2.59569	AGCUGCC	AK150135|Slc9a1|20544|solute carrier family 9 (sodium/hydrogen exchanger), member 1	AK165501|Slc9a1|20544|solute carrier family 9 (sodium/hydrogen exchanger), member 1	NM_016981|Slc9a1|20544|solute carrier family 9 (sodium/hydrogen exchanger), member 1	BC052708|Slc9a1|20544|solute carrier family 9 (sodium/hydrogen exchanger), member 1
mm9_v1_chr17_+_47748530_47748580	2.58759	AGCUGCC	AK041624|Med20|56771|mediator complex subunit 20	AK019130|Med20|56771|mediator complex subunit 20	AK043396|Med20|56771|mediator complex subunit 20	AK146345|Med20|56771|mediator complex subunit 20	NM_020048|Med20|56771|mediator complex subunit 20	AK031504|Med20|56771|mediator complex subunit 20	BC060122|Med20|56771|mediator complex subunit 20	AK141369|Med20|56771|mediator complex subunit 20	AJ245617|Med20|56771|mediator complex subunit 20
mm9_v1_chr3_+_84619399_84619498	2.54315	AGCUGCC	BC085184|Fbxw7|50754|F-box and WD-40 domain protein 7	BC060620|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177773|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr12_-_78063011_78063244	2.54228	AGCUGCC	S80521|Max|17187|Max protein	BC138671|Max|17187|Max protein	BC138672|Max|17187|Max protein	BC145369|Max|17187|Max protein	M63903|Max|17187|Max protein	AK080431|Max|17187|Max protein	NM_001146176|Max|17187|Max protein	NM_008558|Max|17187|Max protein
mm9_v1_chr2_+_4802609_4802674	2.53861	AGCUGCC	BC066037|Sephs1|109079|selenophosphate synthetase 1	NM_175400|Sephs1|109079|selenophosphate synthetase 1	BC065165|Sephs1|109079|selenophosphate synthetase 1	AK044971|Sephs1|109079|selenophosphate synthetase 1
mm9_v1_chr5_+_144861227_144861325	2.52229	AGCUGCC	AK158724|Lmtk2|231876|lemur tyrosine kinase 2	NM_001081109|Lmtk2|231876|lemur tyrosine kinase 2
mm9_v1_chr1_-_34899878_34899900	2.52175	AGCUGCC	AK220453|Fam168b|214469|family with sequence similarity 168, member B	NM_001160235|Fam168b|214469|family with sequence similarity 168, member B	NM_001160236|Fam168b|214469|family with sequence similarity 168, member B	NM_174997|Fam168b|214469|family with sequence similarity 168, member B
mm9_v1_chr11_-_95171521_95171560	2.48431	AGCUGCC	AK078483|Myst2|217127|MYST histone acetyltransferase 2	AK166915|Myst2|217127|MYST histone acetyltransferase 2	NM_001195003|Myst2|217127|MYST histone acetyltransferase 2	NM_001195004|Myst2|217127|MYST histone acetyltransferase 2	NM_177619|Myst2|217127|MYST histone acetyltransferase 2
mm9_v1_chr14_-_70999625_70999666	2.44617	AGCUGCC	NM_194345|Fam160b2|239170|family with sequence similarity 160, member B2	BC050861|Fam160b2|239170|family with sequence similarity 160, member B2
mm9_v1_chr2_+_119500777_119500991	2.44202	AGCUGCC	NM_030112|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC048535|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC022717|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC038032|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117848|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117849|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK177377|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr4_-_108251843_108251953	2.41277	AGCUGCC	BC025853|Prpf38a|230596|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	BC139277|Prpf38a|230596|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	BC139305|Prpf38a|230596|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	AK169741|Prpf38a|230596|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	BC024734|Prpf38a|230596|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	AK075925|Prpf38a|230596|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	NM_172697|Prpf38a|230596|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
mm9_v1_chr3_+_103718042_103718073	2.35892	AGCUGCC	AB101658|Rsbn1|229675|rosbin, round spermatid basic protein 1	NM_172684|Rsbn1|229675|rosbin, round spermatid basic protein 1	BC139213|Rsbn1|229675|rosbin, round spermatid basic protein 1	BC139215|Rsbn1|229675|rosbin, round spermatid basic protein 1
mm9_v1_chr1_-_194956399_194956457	2.35351	AGCUGCC	AK088756|Diexf|215193|digestive organ expansion factor homolog (zebrafish)	AK147251|Diexf|215193|digestive organ expansion factor homolog (zebrafish)	AK052355|Diexf|215193|digestive organ expansion factor homolog (zebrafish)	NM_145415|Diexf|215193|digestive organ expansion factor homolog (zebrafish)
mm9_v1_chr14_+_56384798_56384867	2.34488	AGCUGCC	AK155181|Ltb4r1|16995|leukotriene B4 receptor 1	NM_008519|Ltb4r1|16995|leukotriene B4 receptor 1	AF044030|Ltb4r1|16995|leukotriene B4 receptor 1	AK010895|Ltb4r1|16995|leukotriene B4 receptor 1	AF110104|Ltb4r1|16995|leukotriene B4 receptor 1	BC064063|Ltb4r1|16995|leukotriene B4 receptor 1
mm9_v1_chr1_-_179178874_179178897	2.33178	AGCUGCC	AF124142|Akt3|23797|thymoma viral proto-oncogene 3	BC066861|Akt3|23797|thymoma viral proto-oncogene 3	NM_011785|Akt3|23797|thymoma viral proto-oncogene 3
mm9_v1_chr17_+_29227908_29227961	2.31719	AGCUGCC	NM_001111099|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)
mm9_v1_chr8_+_93352723_93352742	2.3079	AGCUGCC	AK034446|Chd9|109151|chromodomain helicase DNA binding protein 9	NM_177224|Chd9|109151|chromodomain helicase DNA binding protein 9	AK039562|Chd9|109151|chromodomain helicase DNA binding protein 9	DQ127229|Chd9|109151|chromodomain helicase DNA binding protein 9
mm9_v1_chr11_+_72861327_72861399	2.28081	AGCUGCC	NM_025818|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK163780|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK017496|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK020130|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK165317|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK004766|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK033682|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153152|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153241|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC118943|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK011450|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC098495|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene
mm9_v1_chr1_-_175297778_175297829	2.24947	AGCUGCC	AK036352|Cadm3|94332|cell adhesion molecule 3	AK053077|Cadm3|94332|cell adhesion molecule 3	AK038917|Cadm3|94332|cell adhesion molecule 3	NM_053199|Cadm3|94332|cell adhesion molecule 3
mm9_v1_chr11_+_72503487_72503520	2.23981	AGCUGCC	BC139231|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	BC145583|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	NM_009671|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB011370|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB098329|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AK134008|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1
mm9_v1_chr6_+_120616386_120616438	2.22387	AGCUGCC	AK137536|Cecr2|330409|cat eye syndrome chromosome region, candidate 2 homolog (human)	NM_001128151|Cecr2|330409|cat eye syndrome chromosome region, candidate 2 homolog (human)
mm9_v1_chr4_+_59202363_59202463	2.20711	AGCUGCC	AK138848|Ugcg|22234|UDP-glucose ceramide glucosyltransferase	BC050828|Ugcg|22234|UDP-glucose ceramide glucosyltransferase	NM_011673|Ugcg|22234|UDP-glucose ceramide glucosyltransferase
mm9_v1_chr16_-_45654180_45654230	2.19918	AGCUGCC	AK078878|BC016579|212998|cDNA sequence, BC016579	BC016579|BC016579|212998|cDNA sequence, BC016579	NM_145389|BC016579|212998|cDNA sequence, BC016579
mm9_v1_chr4_+_122673318_122673349	2.18181	AGCUGCC	AK146959|Mycl1|16918|v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)	BC053059|Mycl1|16918|v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)	BC089346|Mycl1|16918|v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)	NM_008506|Mycl1|16918|v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)
mm9_v1_chr19_-_60656627_60656934	2.13495	AGCUGCC	AK036606|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	AK169791|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	AK019216|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	BC026363|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	AK147382|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	NM_001172096|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	NM_001172097|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	NM_030197|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene
mm9_v1_chr4_+_128867038_128867085	2.08147	AGCUGCC	NM_134151|Yars|107271|tyrosyl-tRNA synthetase
mm9_v1_chr10_-_94879435_94879509	2.07933	AGCUGCC	AK160537|Socs2|216233|suppressor of cytokine signaling 2	AK162591|Socs2|216233|suppressor of cytokine signaling 2	BC106153|Socs2|216233|suppressor of cytokine signaling 2	NM_007706|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr6_-_37249957_37249977	2.07043	AGCUGCC	AK081360|Dgki|320127|diacylglycerol kinase, iota	NM_001081206|Dgki|320127|diacylglycerol kinase, iota
mm9_v1_chr3_+_84668066_84668066	2.06335	AGCUGCC	BC066093|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177774|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr11_-_97605846_97606123	2.05228	AGCUGCC	AY050219|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK170392|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK037013|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK171497|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK089414|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	BC047282|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	NM_054051|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK146559|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
mm9_v1_chr2_+_32426348_32426407	2.04931	AGCUGCC	BC008256|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2	NM_010073|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2	AK002468|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2	AK086634|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2	AK004241|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2	AB013360|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2
mm9_v1_chr9_-_57682040_57682040	2.038	AGCUGCC	AF116847|Arid3b|56380|AT rich interactive domain 3B (BRIGHT-like)	BC145330|Arid3b|56380|AT rich interactive domain 3B (BRIGHT-like)	BC150755|Arid3b|56380|AT rich interactive domain 3B (BRIGHT-like)	NM_019689|Arid3b|56380|AT rich interactive domain 3B (BRIGHT-like)
mm9_v1_chr7_-_87550315_87550316	2.02176	AGCUGCC	AK020294|Furin|18550|furin (paired basic amino acid cleaving enzyme)	NM_001081454|Furin|18550|furin (paired basic amino acid cleaving enzyme)
mm9_v1_chr10_-_94877824_94877916	1.97913	AGCUGCC	U88327|Socs2|216233|suppressor of cytokine signaling 2	NM_001168657|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr17_+_28828286_28828455	1.96707	AGCUGCC	BC012235|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168508|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168514|Mapk14|26416|mitogen-activated protein kinase 14	NM_011951|Mapk14|26416|mitogen-activated protein kinase 14	BC085303|Mapk14|26416|mitogen-activated protein kinase 14	AK089059|Mapk14|26416|mitogen-activated protein kinase 14	AK133684|Mapk14|26416|mitogen-activated protein kinase 14	AF128892|Mapk14|26416|mitogen-activated protein kinase 14	BC018227|Mapk14|26416|mitogen-activated protein kinase 14	U10871|Mapk14|26416|mitogen-activated protein kinase 14	D83073|Mapk14|26416|mitogen-activated protein kinase 14
mm9_v1_chr6_-_32538191_32538191	1.94755	AGCUGCC	AB073228|Plxna4|243743|plexin A4	NM_175750|Plxna4|243743|plexin A4
mm9_v1_chr2_-_160738055_160738063	1.9362	AGCUGCC	BC054738|Emilin3|280635|elastin microfibril interfacer 3	BC057619|Emilin3|280635|elastin microfibril interfacer 3	NM_182840|Emilin3|280635|elastin microfibril interfacer 3
mm9_v1_chr3_+_98944990_98945019	1.90647	AGCUGCC	BC089583|Wars2|70560|tryptophanyl tRNA synthetase 2 (mitochondrial)	AK036902|Wars2|70560|tryptophanyl tRNA synthetase 2 (mitochondrial)	AK017602|Wars2|70560|tryptophanyl tRNA synthetase 2 (mitochondrial)	AK042715|Wars2|70560|tryptophanyl tRNA synthetase 2 (mitochondrial)	AK042964|Wars2|70560|tryptophanyl tRNA synthetase 2 (mitochondrial)	NM_027462|Wars2|70560|tryptophanyl tRNA synthetase 2 (mitochondrial)	AK033774|Wars2|70560|tryptophanyl tRNA synthetase 2 (mitochondrial)
mm9_v1_chr18_-_39646734_39646900	1.89976	AGCUGCC	AK037733|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	DQ504162|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	HM236293|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13358|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13359|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	NM_008173|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129912|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129913|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X04435|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr6_+_54766562_54766917	1.877	AGCUGCC	AF513708|Znrf2|387524|zinc and ring finger 2	NM_199143|Znrf2|387524|zinc and ring finger 2	BC104316|Znrf2|387524|zinc and ring finger 2	BC104317|Znrf2|387524|zinc and ring finger 2	BC125242|Znrf2|387524|zinc and ring finger 2
mm9_v1_chr12_-_4234293_4234293	1.8681	AGCUGCC	AK029226|Cenpo|52504|centromere protein O	NM_134046|Cenpo|52504|centromere protein O
mm9_v1_chr2_+_75497282_75497379	1.84091	AGCUGCC	NM_053263|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_146130|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_198090|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK133860|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK010481|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC038364|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK169663|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AB201711|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC057655|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC062198|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AF463524|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116250|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116251|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC157904|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC157919|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158038|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158074|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC172011|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC023908|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC064824|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3
mm9_v1_chr11_-_117830554_117830679	1.82107	AGCUGCC	NM_007707|Socs3|12702|suppressor of cytokine signaling 3
mm9_v1_chr4_-_44180323_44180519	1.81568	AGCUGCC	BC062976|Rnf38|73469|ring finger protein 38	BC060730|Rnf38|73469|ring finger protein 38	NM_175201|Rnf38|73469|ring finger protein 38	AK006888|Rnf38|73469|ring finger protein 38
mm9_v1_chr10_+_19654195_19654331	1.80762	AGCUGCC	AB006787|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5	BC116627|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5	BC116628|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5	BC133697|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5	NM_008580|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5
mm9_v1_chr5_-_124778459_124778459	1.78848	AGCUGCC	NM_001081323|Mphosph9|269702|M-phase phosphoprotein 9
mm9_v1_chr15_-_96472392_96472392	1.7883	AGCUGCC	AK034130|Slc38a1|105727|solute carrier family 38, member 1	NM_134086|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr3_-_133207209_133207353	1.77639	AGCUGCC	AK155776|Tet2|214133|tet oncogene family member 2	DQ079067|Tet2|214133|tet oncogene family member 2	NM_001040400|Tet2|214133|tet oncogene family member 2
mm9_v1_chr16_+_24448176_24448242	1.75098	AGCUGCC	AK054550|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	NM_001145952|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	BC085321|Lpp|210126|LIM domain containing preferred translocation partner in lipoma
mm9_v1_chr10_-_128133261_128133372	1.73688	AGCUGCC	AK144551|Rab5b|19344|RAB5B, member RAS oncogene family	AK083034|Rab5b|19344|RAB5B, member RAS oncogene family	AK081251|Rab5b|19344|RAB5B, member RAS oncogene family	NM_177411|Rab5b|19344|RAB5B, member RAS oncogene family
mm9_v1_chr2_-_65962685_65962849	1.71567	AGCUGCC	U70538|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	BC043331|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	BC003765|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK007135|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK135489|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK019995|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	NM_015736|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3
mm9_v1_chr13_+_55311142_55311142	1.66824	AGCUGCC	AK145783|Nsd1|18193|nuclear receptor-binding SET-domain protein 1	NM_008739|Nsd1|18193|nuclear receptor-binding SET-domain protein 1
mm9_v1_chr7_-_87547589_87547748	1.66268	AGCUGCC	L26489|Furin|18550|furin (paired basic amino acid cleaving enzyme)	NM_011046|Furin|18550|furin (paired basic amino acid cleaving enzyme)
mm9_v1_chr10_+_127814144_127814228	1.64041	AGCUGCC	AK144017|Ankrd52|237615|ankyrin repeat domain 52	AK032429|Ankrd52|237615|ankyrin repeat domain 52	NM_172790|Ankrd52|237615|ankyrin repeat domain 52	AK090124|Ankrd52|237615|ankyrin repeat domain 52	AK035533|Ankrd52|237615|ankyrin repeat domain 52	BC117907|Ankrd52|237615|ankyrin repeat domain 52	BC117908|Ankrd52|237615|ankyrin repeat domain 52
mm9_v1_chr4_+_13678443_13678575	1.63854	AGCUGCC	NM_001111027|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chrX_+_156278399_156278494	1.61559	AGCUGCC	AK028299|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_001135728|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr13_-_3917356_3917465	1.58663	AGCUGCC	AF094520|Net1|56349|neuroepithelial cell transforming gene 1	AK077728|Net1|56349|neuroepithelial cell transforming gene 1	NM_019671|Net1|56349|neuroepithelial cell transforming gene 1
mm9_v1_chr3_+_88336316_88336316	1.58345	AGCUGCC	NM_001029890|Mex3a|72640|mex3 homolog A (C. elegans)
mm9_v1_chr17_+_29797537_29797684	1.55966	AGCUGCC	AK080379|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	NM_028791|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK049190|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK154773|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK042060|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK043733|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK088624|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK150392|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK151194|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK152276|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK152799|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK153021|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK153066|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	BC024691|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK005044|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK152452|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK198101|Ftsjd2|74157|FtsJ methyltransferase domain containing 2
mm9_v1_chr15_-_96473193_96473343	1.55762	AGCUGCC	AK162612|Slc38a1|105727|solute carrier family 38, member 1	AK081724|Slc38a1|105727|solute carrier family 38, member 1	NM_001166458|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chrX_+_156065141_156065596	1.53055	AGCUGCC	AK049182|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK172022|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK080930|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_001135727|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK038540|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK208632|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr5_-_68238654_68238670	1.50693	AGCUGCC	DQ503480|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK151709|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503479|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_001038999|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_009727|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503477|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chrX_+_156146532_156146595	1.49339	AGCUGCC	AK030839|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_021389|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK004636|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK020782|Sh3kbp1|58194|SH3-domain kinase binding protein 1	BC052863|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr10_-_94878117_94878117	1.48577	AGCUGCC	NM_001168656|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr18_+_82644510_82644514	1.48536	AGCUGCC	NM_001025245|Mbp|17196|myelin basic protein	NM_010777|Mbp|17196|myelin basic protein
mm9_v1_chr2_-_73052484_73052503	1.44355	AGCUGCC	AK013055|Ola1|67059|Obg-like ATPase 1	NM_025942|Ola1|67059|Obg-like ATPase 1	NM_030091|Ola1|67059|Obg-like ATPase 1
mm9_v1_chr19_+_5447546_5447754	1.44147	AGCUGCC	AK144785|Fosl1|14283|fos-like antigen 1	NM_010235|Fosl1|14283|fos-like antigen 1	AK144839|Fosl1|14283|fos-like antigen 1	AK145035|Fosl1|14283|fos-like antigen 1	BC052917|Fosl1|14283|fos-like antigen 1	U34245|Fosl1|14283|fos-like antigen 1
mm9_v1_chr13_-_54789548_54789560	1.42182	AGCUGCC	AK171943|Rnf44|105239|ring finger protein 44	AK172257|Rnf44|105239|ring finger protein 44	NM_001146027|Rnf44|105239|ring finger protein 44
mm9_v1_chrX_-_71330931_71331012	1.4169	AGCUGCC	AF158181|Mecp2|17257|methyl CpG binding protein 2	NM_010788|Mecp2|17257|methyl CpG binding protein 2	AK041453|Mecp2|17257|methyl CpG binding protein 2	BC027153|Mecp2|17257|methyl CpG binding protein 2	AK158664|Mecp2|17257|methyl CpG binding protein 2	NM_001081979|Mecp2|17257|methyl CpG binding protein 2
mm9_v1_chr7_+_109118356_109118356	1.38026	AGCUGCC	BC049791|Numa1|101706|nuclear mitotic apparatus protein 1	NM_133947|Numa1|101706|nuclear mitotic apparatus protein 1
mm9_v1_chr1_+_88483674_88483733	1.35118	AGCUGCC	AK081309|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	NM_172974|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	AK053615|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	AK168740|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	AK170140|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	AF071317|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	BC012659|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)
mm9_v1_chr8_+_107064705_107064811	1.34686	AGCUGCC	AK090390|Car7|12354|carbonic anhydrase 7	AY075021|Car7|12354|carbonic anhydrase 7	NM_053070|Car7|12354|carbonic anhydrase 7	BC094913|Car7|12354|carbonic anhydrase 7	AF291660|Car7|12354|carbonic anhydrase 7
mm9_v1_chr2_+_155601077_155601159	1.33754	AGCUGCC	NM_010808|Mmp24|17391|matrix metallopeptidase 24	AJ010262|Mmp24|17391|matrix metallopeptidase 24	AB021226|Mmp24|17391|matrix metallopeptidase 24
mm9_v1_chr11_+_105042843_105042862	1.33228	AGCUGCC	AK165667|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)	NM_001112705|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)	NM_011903|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)
mm9_v1_chr6_-_3713622_3713622	1.31217	AGCUGCC	AK133983|Calcr|12311|calcitonin receptor	NM_001042725|Calcr|12311|calcitonin receptor
mm9_v1_chr4_-_139388882_139388882	1.30659	AGCUGCC	AF254422|Pax7|18509|paired box gene 7	NM_011039|Pax7|18509|paired box gene 7
mm9_v1_chr11_-_102742230_102742316	1.29259	AGCUGCC	U97079|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK172875|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK052242|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	BC052674|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	BC054778|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK150158|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK165624|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK153473|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK154878|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK165151|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	NM_001109995|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	NM_011431|Eftud2|20624|elongation factor Tu GTP binding domain containing 2
mm9_v1_chr11_+_94491055_94491166	1.27958	AGCUGCC	AK159374|Lrrc59|98238|leucine rich repeat containing 59	AK159552|Lrrc59|98238|leucine rich repeat containing 59	AK166576|Lrrc59|98238|leucine rich repeat containing 59	AK053450|Lrrc59|98238|leucine rich repeat containing 59	BC006877|Lrrc59|98238|leucine rich repeat containing 59	NM_133807|Lrrc59|98238|leucine rich repeat containing 59	AK169390|Lrrc59|98238|leucine rich repeat containing 59	BC066172|Lrrc59|98238|leucine rich repeat containing 59	AK167604|Lrrc59|98238|leucine rich repeat containing 59	AK169250|Lrrc59|98238|leucine rich repeat containing 59
mm9_v1_chr7_+_51565563_51565633	1.27489	AGCUGCC	NM_001034115|Shank1|243961|SH3/ankyrin domain gene 1
mm9_v1_chr2_+_22751003_22751041	1.27369	AGCUGCC	NM_019501|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1
mm9_v1_chr17_-_84865455_84865547	1.25717	AGCUGCC	EF222207|Thada|240174|thyroid adenoma associated	AK154078|Thada|240174|thyroid adenoma associated	AK044550|Thada|240174|thyroid adenoma associated	NM_183021|Thada|240174|thyroid adenoma associated
mm9_v1_chr14_+_45970767_45970937	1.25567	AGCUGCC	AK154136|Styx|56291|serine/threonine/tyrosine interaction protein	AK030122|Styx|56291|serine/threonine/tyrosine interaction protein	BC096674|Styx|56291|serine/threonine/tyrosine interaction protein	NM_019637|Styx|56291|serine/threonine/tyrosine interaction protein	AK166043|Styx|56291|serine/threonine/tyrosine interaction protein	AK046970|Styx|56291|serine/threonine/tyrosine interaction protein	AK042741|Styx|56291|serine/threonine/tyrosine interaction protein	U34973|Styx|56291|serine/threonine/tyrosine interaction protein	BC038608|Styx|56291|serine/threonine/tyrosine interaction protein	BC085089|Styx|56291|serine/threonine/tyrosine interaction protein	AK002822|Styx|56291|serine/threonine/tyrosine interaction protein
mm9_v1_chr7_+_100023762_100023966	1.25093	AGCUGCC	NM_028243|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK011112|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK051677|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK166282|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK011816|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	BC089575|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK054462|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	BC055022|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	BC026424|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)
mm9_v1_chr14_-_75347637_75347721	1.24412	AGCUGCC	AK129264|Lrch1|380916|leucine-rich repeats and calponin homology (CH) domain containing 1	AK143909|Lrch1|380916|leucine-rich repeats and calponin homology (CH) domain containing 1	NM_001033439|Lrch1|380916|leucine-rich repeats and calponin homology (CH) domain containing 1
mm9_v1_chr6_-_72389491_72389552	1.23613	AGCUGCC	BC003451|Mat2a|232087|methionine adenosyltransferase II, alpha	AB070266|Mat2a|232087|methionine adenosyltransferase II, alpha	BC058360|Mat2a|232087|methionine adenosyltransferase II, alpha	AK145407|Mat2a|232087|methionine adenosyltransferase II, alpha	AK052764|Mat2a|232087|methionine adenosyltransferase II, alpha	AK133960|Mat2a|232087|methionine adenosyltransferase II, alpha	AK144189|Mat2a|232087|methionine adenosyltransferase II, alpha	AK150040|Mat2a|232087|methionine adenosyltransferase II, alpha	AK151281|Mat2a|232087|methionine adenosyltransferase II, alpha	AK160869|Mat2a|232087|methionine adenosyltransferase II, alpha	AK161852|Mat2a|232087|methionine adenosyltransferase II, alpha	AK164137|Mat2a|232087|methionine adenosyltransferase II, alpha	AK166671|Mat2a|232087|methionine adenosyltransferase II, alpha	AK168155|Mat2a|232087|methionine adenosyltransferase II, alpha	AK169705|Mat2a|232087|methionine adenosyltransferase II, alpha	AK034757|Mat2a|232087|methionine adenosyltransferase II, alpha	NM_145569|Mat2a|232087|methionine adenosyltransferase II, alpha
mm9_v1_chr7_-_54263783_54263783	1.22295	AGCUGCC	NM_175318|Spty2d1|101685|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
mm9_v1_chr16_+_17233664_17233756	1.22247	AGCUGCC	AK157276|Hic2|58180|hypermethylated in cancer 2	AK156332|Hic2|58180|hypermethylated in cancer 2	NM_178922|Hic2|58180|hypermethylated in cancer 2	BC065124|Hic2|58180|hypermethylated in cancer 2	AK129266|Hic2|58180|hypermethylated in cancer 2	AK084975|Hic2|58180|hypermethylated in cancer 2
mm9_v1_chr4_-_35792385_35792444	1.21444	AGCUGCC	BC137866|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC144985|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC145692|Lingo2|242384|leucine rich repeat and Ig domain containing 2	AK045639|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_001166001|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_175516|Lingo2|242384|leucine rich repeat and Ig domain containing 2
mm9_v1_chr4_-_151370212_151370359	1.21235	AGCUGCC	AY069976|Phf13|230936|PHD finger protein 13	BC029632|Phf13|230936|PHD finger protein 13	BC059282|Phf13|230936|PHD finger protein 13	NM_172705|Phf13|230936|PHD finger protein 13	AK132066|Phf13|230936|PHD finger protein 13
mm9_v1_chr12_+_81891479_81891592	1.19859	AGCUGCC	AK030233|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK161132|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK143867|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	BC040401|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	NM_178682|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK151939|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK152820|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK164823|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene
mm9_v1_chr13_-_3892788_3892823	1.18915	AGCUGCC	AJ010045|Net1|56349|neuroepithelial cell transforming gene 1	AK020636|Net1|56349|neuroepithelial cell transforming gene 1	AK088632|Net1|56349|neuroepithelial cell transforming gene 1	AK139921|Net1|56349|neuroepithelial cell transforming gene 1	BC004699|Net1|56349|neuroepithelial cell transforming gene 1	AK082128|Net1|56349|neuroepithelial cell transforming gene 1	NM_001047159|Net1|56349|neuroepithelial cell transforming gene 1
mm9_v1_chr2_-_62249934_62250287	1.18529	AGCUGCC	X58384|Dpp4|13482|dipeptidylpeptidase 4	AK040409|Dpp4|13482|dipeptidylpeptidase 4	BC022183|Dpp4|13482|dipeptidylpeptidase 4	AK163085|Dpp4|13482|dipeptidylpeptidase 4	NM_001159543|Dpp4|13482|dipeptidylpeptidase 4	NM_010074|Dpp4|13482|dipeptidylpeptidase 4
mm9_v1_chr19_-_5912757_5912865	1.18331	AGCUGCC	U10435|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK215194|Dpf2|19708|D4, zinc and double PHD fingers family 2	BC012709|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK138047|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144848|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK019051|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144106|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK004812|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144954|Dpf2|19708|D4, zinc and double PHD fingers family 2	U43921|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK145851|Dpf2|19708|D4, zinc and double PHD fingers family 2	NM_011262|Dpf2|19708|D4, zinc and double PHD fingers family 2
mm9_v1_chr18_-_67884185_67884280	1.17938	AGCUGCC	S52655|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	AK076072|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	M80739|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	M81477|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	AK132013|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	AK014528|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	BC008269|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	NM_001127177|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	NM_008977|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2
mm9_v1_chr1_+_192922288_192922292	1.17562	AGCUGCC	AK020278|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3	BC117083|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3	BC117085|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3	NM_030060|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3
mm9_v1_chr15_+_83610434_83610456	1.17141	AGCUGCC	AK048421|Mpped1|223726|metallophosphoesterase domain containing 1	NM_172610|Mpped1|223726|metallophosphoesterase domain containing 1
mm9_v1_chr1_-_57028171_57028177	1.1421	AGCUGCC	AF319623|Satb2|212712|special AT-rich sequence binding protein 2	NM_139146|Satb2|212712|special AT-rich sequence binding protein 2
mm9_v1_chr10_-_128258639_128258702	1.1406	AGCUGCC	AK002824|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	AK002583|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	AK013455|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	BC002146|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	NM_024180|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)
mm9_v1_chrX_+_147955201_147955234	1.13876	AGCUGCC	AK040969|Phf8|320595|PHD finger protein 8	NM_001113354|Phf8|320595|PHD finger protein 8	NM_177201|Phf8|320595|PHD finger protein 8
mm9_v1_chr9_+_106073255_106073259	1.13102	AGCUGCC	AK037620|Wdr82|77305|WD repeat domain containing 82	AK035109|Wdr82|77305|WD repeat domain containing 82	AK149692|Wdr82|77305|WD repeat domain containing 82	AK159240|Wdr82|77305|WD repeat domain containing 82	AK172474|Wdr82|77305|WD repeat domain containing 82	NM_029896|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr11_+_68316520_68316601	1.10973	AGCUGCC	NM_001004435|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	NM_001081566|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	AK169948|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	AK036623|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	BC028998|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	AK171063|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	AK151178|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	AK153039|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6
mm9_v1_chr19_-_12870612_12870615	1.09667	AGCUGCC	NM_053009|Zfp91|109910|zinc finger protein 91	AK147560|Zfp91|109910|zinc finger protein 91
mm9_v1_chr11_+_115794942_115794982	1.09567	AGCUGCC	AK147869|Sap30bp|57230|SAP30 binding protein	AK012245|Sap30bp|57230|SAP30 binding protein	BC021757|Sap30bp|57230|SAP30 binding protein	NM_020483|Sap30bp|57230|SAP30 binding protein	X68061|Sap30bp|57230|SAP30 binding protein
mm9_v1_chr17_+_26551909_26551909	1.09051	AGCUGCC	DQ839448|Neurl1b|240055|neuralized homolog 1b (Drosophila)	GQ414760|Neurl1b|240055|neuralized homolog 1b (Drosophila)	NM_001081656|Neurl1b|240055|neuralized homolog 1b (Drosophila)
mm9_v1_chr2_-_156904966_156905000	1.0573	AGCUGCC	AK147227|9830001H06Rik|320706|RIKEN cDNA 9830001H06 gene	NM_001164663|9830001H06Rik|320706|RIKEN cDNA 9830001H06 gene
mm9_v1_chr7_-_30290470_30290595	1.05581	AGCUGCC	AK171182|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3	AK154121|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3	NM_001081028|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3
mm9_v1_chr6_-_3714466_3714712	1.05468	AGCUGCC	AK162391|Calcr|12311|calcitonin receptor	U18542|Calcr|12311|calcitonin receptor	AK039161|Calcr|12311|calcitonin receptor	AK138275|Calcr|12311|calcitonin receptor	NM_007588|Calcr|12311|calcitonin receptor
mm9_v1_chr5_+_150821249_150821339	1.04267	AGCUGCC	AF346501|Rxfp2|140498|relaxin/insulin-like family peptide receptor 2	NM_080468|Rxfp2|140498|relaxin/insulin-like family peptide receptor 2	BC120741|Rxfp2|140498|relaxin/insulin-like family peptide receptor 2	BC144802|Rxfp2|140498|relaxin/insulin-like family peptide receptor 2	BC144803|Rxfp2|140498|relaxin/insulin-like family peptide receptor 2	AK034592|Rxfp2|140498|relaxin/insulin-like family peptide receptor 2
mm9_v1_chr17_+_28829512_28829512	1.02633	AGCUGCC	AK151348|Mapk14|26416|mitogen-activated protein kinase 14	AK153025|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168513|Mapk14|26416|mitogen-activated protein kinase 14
mm9_v1_chr11_-_100511964_100512006	1.02219	AGCUGCC	BC116726|Zfp385c|278304|zinc finger protein 385C	AK044299|Zfp385c|278304|zinc finger protein 385C	NM_177790|Zfp385c|278304|zinc finger protein 385C
mm9_v1_chr9_-_108092712_108092716	1.0046	AGCUGCC	NM_007567|Bsn|12217|bassoon
mm9_v1_chr14_+_14845004_14845173	0.990825	AGCUGCC	AK046679|Atxn7|246103|ataxin 7	NM_139227|Atxn7|246103|ataxin 7	BC137846|Atxn7|246103|ataxin 7
mm9_v1_chr18_+_32536846_32536879	0.987467	AGCUGCC	NM_001083334|Bin1|30948|bridging integrator 1	NM_009668|Bin1|30948|bridging integrator 1
mm9_v1_chr19_+_57527393_57527409	0.958457	AGCUGCC	NM_028115|Trub1|72133|TruB pseudouridine (psi) synthase homolog 1 (E. coli)	NM_029839|Trub1|72133|TruB pseudouridine (psi) synthase homolog 1 (E. coli)	AK011362|Trub1|72133|TruB pseudouridine (psi) synthase homolog 1 (E. coli)
mm9_v1_chr13_-_17896909_17896930	0.940993	AGCUGCC	AK173265|Cdk13|69562|cyclin-dependent kinase 13	NM_001081058|Cdk13|69562|cyclin-dependent kinase 13	NM_027118|Cdk13|69562|cyclin-dependent kinase 13
mm9_v1_chr5_+_65928483_65928591	0.91968	AGCUGCC	AK139564|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	NM_016786|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK048194|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK035371|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK018366|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK160728|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK031055|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK036068|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK162142|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AB011081|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	BC085311|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK166647|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)
mm9_v1_chr15_-_96472600_96472827	0.913184	AGCUGCC	AK040250|Slc38a1|105727|solute carrier family 38, member 1	AK029189|Slc38a1|105727|solute carrier family 38, member 1	BC066815|Slc38a1|105727|solute carrier family 38, member 1	BC030378|Slc38a1|105727|solute carrier family 38, member 1	AK049173|Slc38a1|105727|solute carrier family 38, member 1	AK050914|Slc38a1|105727|solute carrier family 38, member 1	AK082683|Slc38a1|105727|solute carrier family 38, member 1	NM_001166456|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr2_-_153355706_153355706	0.907111	AGCUGCC	AK147524|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	NM_001134300|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene
mm9_v1_chr6_-_124813922_124813935	0.887158	AGCUGCC	BC031437|Gpr162|14788|G protein-coupled receptor 162	NM_013533|Gpr162|14788|G protein-coupled receptor 162
mm9_v1_chr4_-_99495806_99495876	0.88579	AGCUGCC	AK045037|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	AK166362|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	NM_026348|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	AK179730|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	BC049557|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	AK013373|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	AK015557|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	AK153726|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	AK088352|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	AK165072|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	AK005779|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)
mm9_v1_chr4_-_126145660_126145664	0.877237	AGCUGCC	BC129915|Eif2c1|236511|eukaryotic translation initiation factor 2C, 1	AB081471|Eif2c1|236511|eukaryotic translation initiation factor 2C, 1	BC129914|Eif2c1|236511|eukaryotic translation initiation factor 2C, 1	NM_153403|Eif2c1|236511|eukaryotic translation initiation factor 2C, 1
mm9_v1_chr4_-_153349097_153349234	0.867222	AGCUGCC	AB009377|Dffb|13368|DNA fragmentation factor, beta subunit	BC053052|Dffb|13368|DNA fragmentation factor, beta subunit	AK036094|Dffb|13368|DNA fragmentation factor, beta subunit	AK089267|Dffb|13368|DNA fragmentation factor, beta subunit	NM_007859|Dffb|13368|DNA fragmentation factor, beta subunit	AK077619|Dffb|13368|DNA fragmentation factor, beta subunit
mm9_v1_chr4_+_59818521_59818521	0.811759	AGCUGCC	AK147437|Snx30|209131|sorting nexin family member 30	NM_172468|Snx30|209131|sorting nexin family member 30
mm9_v1_chr16_-_17911283_17911450	0.810602	AGCUGCC	AK088520|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK142684|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK148404|Dgcr14|27886|DiGeorge syndrome critical region gene 14	BC013711|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AF037256|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_001081633|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_022408|Dgcr14|27886|DiGeorge syndrome critical region gene 14
mm9_v1_chr7_-_17509228_17509415	0.803279	AGCUGCC	AK169630|Calm3|12315|calmodulin 3	BC050926|Calm3|12315|calmodulin 3	M19380|Calm3|12315|calmodulin 3	AK165568|Calm3|12315|calmodulin 3	AK153179|Calm3|12315|calmodulin 3	AK152754|Calm3|12315|calmodulin 3	AK151610|Calm3|12315|calmodulin 3	NM_007590|Calm3|12315|calmodulin 3
mm9_v1_chr11_-_78200059_78200059	0.795413	AGCUGCC	NM_008238|Foxn1|15218|forkhead box N1	X81593|Foxn1|15218|forkhead box N1
mm9_v1_chr1_-_153937364_153937449	0.794689	AGCUGCC	AK144357|LOC545371|545371|hypothetical protein LOC545371	NM_197990|1700025G04Rik|69399|RIKEN cDNA 1700025G04 gene
mm9_v1_chr11_-_101327431_101327547	0.775527	AGCUGCC	BC085504|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK159310|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	BC025496|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK170371|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	BC099678|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK154965|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK154178|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK159315|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK160891|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK034795|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK155342|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	NM_012037|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK145193|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)
mm9_v1_chr9_+_56842653_56842808	0.765806	AGCUGCC	BC053017|Ptpn9|56294|protein tyrosine phosphatase, non-receptor type 9	NM_019651|Ptpn9|56294|protein tyrosine phosphatase, non-receptor type 9
mm9_v1_chr2_+_121782185_121782265	0.760791	AGCUGCC	AK033382|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	NM_212450|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK169248|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK044805|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK053513|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	BC066219|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK030085|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK041422|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK049463|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK160431|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	BC052660|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm9_v1_chr1_+_40738476_40738556	0.742903	AGCUGCC	BC103685|Slc9a2|226999|solute carrier family 9 (sodium/hydrogen exchanger), member 2	BC104737|Slc9a2|226999|solute carrier family 9 (sodium/hydrogen exchanger), member 2	BC105676|Slc9a2|226999|solute carrier family 9 (sodium/hydrogen exchanger), member 2	NM_001033289|Slc9a2|226999|solute carrier family 9 (sodium/hydrogen exchanger), member 2
mm9_v1_chr1_-_37776633_37776680	0.735355	AGCUGCC	AK039052|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene	BC072639|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene	NM_028096|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene
mm9_v1_chr9_+_57385317_57385465	0.729907	AGCUGCC	AK028365|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene	NM_001166364|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene	NM_175273|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene	BC111883|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene	BC112403|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene
mm9_v1_chr7_-_106632113_106632218	0.729412	AGCUGCC	AK206775|Rps3|27050|ribosomal protein S3	X76772|Rps3|27050|ribosomal protein S3	BC010721|Rps3|27050|ribosomal protein S3	AK165174|Rps3|27050|ribosomal protein S3	AK167266|Rps3|27050|ribosomal protein S3	AK168845|Rps3|27050|ribosomal protein S3	AK150479|Rps3|27050|ribosomal protein S3	AK003181|Rps3|27050|ribosomal protein S3	AK011655|Rps3|27050|ribosomal protein S3	AK146796|Rps3|27050|ribosomal protein S3	AK012234|Rps3|27050|ribosomal protein S3	AK012314|Rps3|27050|ribosomal protein S3	AK012538|Rps3|27050|ribosomal protein S3	AK088038|Rps3|27050|ribosomal protein S3	AK143603|Rps3|27050|ribosomal protein S3	AK148030|Rps3|27050|ribosomal protein S3	AK160526|Rps3|27050|ribosomal protein S3	AK167210|Rps3|27050|ribosomal protein S3	AK010579|Rps3|27050|ribosomal protein S3	AK010678|Rps3|27050|ribosomal protein S3	AK051243|Rps3|27050|ribosomal protein S3	AK146165|Rps3|27050|ribosomal protein S3	AK159508|Rps3|27050|ribosomal protein S3	AK164077|Rps3|27050|ribosomal protein S3	AK166750|Rps3|27050|ribosomal protein S3	NM_012052|Rps3|27050|ribosomal protein S3
mm9_v1_chr6_-_71390592_71390638	0.722414	AGCUGCC	AK164384|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)	NM_024288|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
mm9_v1_chr13_-_112280018_112280262	0.721063	AGCUGCC	BC067075|Gpbp1|73274|GC-rich promoter binding protein 1	AK136894|Gpbp1|73274|GC-rich promoter binding protein 1	AK161928|Gpbp1|73274|GC-rich promoter binding protein 1	BC094888|Gpbp1|73274|GC-rich promoter binding protein 1	AK169406|Gpbp1|73274|GC-rich promoter binding protein 1	AY382529|Gpbp1|73274|GC-rich promoter binding protein 1	AK082704|Gpbp1|73274|GC-rich promoter binding protein 1	BC096442|Gpbp1|73274|GC-rich promoter binding protein 1	BC076635|Gpbp1|73274|GC-rich promoter binding protein 1	AK163370|Gpbp1|73274|GC-rich promoter binding protein 1	AK135728|Gpbp1|73274|GC-rich promoter binding protein 1	AK145318|Gpbp1|73274|GC-rich promoter binding protein 1	AK163390|Gpbp1|73274|GC-rich promoter binding protein 1	NM_001122963|Gpbp1|73274|GC-rich promoter binding protein 1	NM_028487|Gpbp1|73274|GC-rich promoter binding protein 1	AK006608|Gpbp1|73274|GC-rich promoter binding protein 1
mm9_v1_chr1_+_135027742_135027959	0.701902	AGCUGCC	NM_133819|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK082957|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK170862|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK167565|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	BC006897|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	BC058078|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b
mm9_v1_chr17_-_46693110_46693149	0.697523	AGCUGCC	NM_020493|Srf|20807|serum response factor	BC051950|Srf|20807|serum response factor
mm9_v1_chr3_+_99689339_99689354	0.693943	AGCUGCC	AK029691|Spag17|74362|sperm associated antigen 17	NM_028892|Spag17|74362|sperm associated antigen 17	AK029947|Spag17|74362|sperm associated antigen 17	AK016477|Spag17|74362|sperm associated antigen 17	AY555275|Spag17|74362|sperm associated antigen 17	AY792594|Spag17|74362|sperm associated antigen 17
mm9_v1_chr6_-_52141697_52141712	0.67596	AGCUGCC	AK076098|Hoxa4|15401|homeobox A4	BC107172|Hoxa4|15401|homeobox A4	NM_008265|Hoxa4|15401|homeobox A4
mm9_v1_chr19_-_42687234_42687295	0.662315	AGCUGCC	BC068307|Loxl4|67573|lysyl oxidase-like 4	AK014331|Loxl4|67573|lysyl oxidase-like 4	NM_001164311|Loxl4|67573|lysyl oxidase-like 4	NM_053083|Loxl4|67573|lysyl oxidase-like 4
mm9_v1_chr16_+_5050149_5050235	0.654904	AGCUGCC	AK019173|Ubn1|170644|ubinuclein 1	AK147571|Ubn1|170644|ubinuclein 1	NM_026666|Ubn1|170644|ubinuclein 1	AK020146|Ubn1|170644|ubinuclein 1
mm9_v1_chr7_-_120512849_120512864	0.649094	AGCUGCC	BC050781|Btbd10|68815|BTB (POZ) domain containing 10	NM_133700|Btbd10|68815|BTB (POZ) domain containing 10
mm9_v1_chr11_+_58144207_58144291	0.628783	AGCUGCC	AK156171|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK159202|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK172333|Sh3bp5l|79566|SH3 binding domain protein 5 like	NM_001161338|Sh3bp5l|79566|SH3 binding domain protein 5 like	NM_024480|Sh3bp5l|79566|SH3 binding domain protein 5 like	BC094418|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK166491|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK144928|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK086088|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK150129|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK167203|Sh3bp5l|79566|SH3 binding domain protein 5 like
mm9_v1_chr1_-_164670534_164670687	0.62337	AGCUGCC	AK013732|Prrc2c|226562|proline-rich coiled-coil 2C	AK077748|Prrc2c|226562|proline-rich coiled-coil 2C	BC053406|Prrc2c|226562|proline-rich coiled-coil 2C	BC064009|Prrc2c|226562|proline-rich coiled-coil 2C	BC021412|Prrc2c|226562|proline-rich coiled-coil 2C	BC037745|Prrc2c|226562|proline-rich coiled-coil 2C	BC080672|Prrc2c|226562|proline-rich coiled-coil 2C	AK030766|Prrc2c|226562|proline-rich coiled-coil 2C	AK135245|Prrc2c|226562|proline-rich coiled-coil 2C	BC006723|Prrc2c|226562|proline-rich coiled-coil 2C	AK007762|Prrc2c|226562|proline-rich coiled-coil 2C	AK167018|Prrc2c|226562|proline-rich coiled-coil 2C	AK082487|Prrc2c|226562|proline-rich coiled-coil 2C	AK166509|Prrc2c|226562|proline-rich coiled-coil 2C	NM_001081290|Prrc2c|226562|proline-rich coiled-coil 2C
mm9_v1_chr6_+_39523866_39523933	0.595785	AGCUGCC	AK028557|Adck2|57869|aarF domain containing kinase 2	AK161225|Adck2|57869|aarF domain containing kinase 2	AK028568|Adck2|57869|aarF domain containing kinase 2	NM_178873|Adck2|57869|aarF domain containing kinase 2
mm9_v1_chr10_-_122513447_122513560	0.578107	AGCUGCC	AK122425|Mon2|67074|MON2 homolog (yeast)	NM_001163024|Mon2|67074|MON2 homolog (yeast)	NM_001163025|Mon2|67074|MON2 homolog (yeast)	NM_153395|Mon2|67074|MON2 homolog (yeast)
mm9_v1_chrX_-_160396490_160396625	0.568912	AGCUGCC	BC083160|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	BC099617|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	BC065693|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	D45205|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	AK030296|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	AK045504|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	NM_009453|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	NM_178794|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2
mm9_v1_chr4_+_13711928_13711928	0.564345	AGCUGCC	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr6_+_119186543_119186612	0.551285	AGCUGCC	NM_001033382|Cacna2d4|319734|calcium channel, voltage-dependent, alpha 2/delta subunit 4	AK044427|Cacna2d4|319734|calcium channel, voltage-dependent, alpha 2/delta subunit 4	BC141091|Cacna2d4|319734|calcium channel, voltage-dependent, alpha 2/delta subunit 4
mm9_v1_chr2_-_118982714_118982769	0.548558	AGCUGCC	BC061186|Fam82a2|67809|family with sequence similarity 82, member A2	AK171770|Fam82a2|67809|family with sequence similarity 82, member A2	NM_001033136|Fam82a2|67809|family with sequence similarity 82, member A2
mm9_v1_chr7_-_52715059_52715287	0.548259	AGCUGCC	BC150761|Ftl2|14337|ferritin light chain 2	BC081462|Ftl1|14325|ferritin light chain 1	BC106145|Ftl1|14325|ferritin light chain 1	J04716|Ftl1|14325|ferritin light chain 1	BC092259|Ftl1|14325|ferritin light chain 1	BC083350|Ftl1|14325|ferritin light chain 1	AK213945|Gm15590|100270751|ferritin light chain 1 pseudogene	BC019840|Ftl1|14325|ferritin light chain 1	BC085309|Ftl1|14325|ferritin light chain 1	BC106146|Ftl1|14325|ferritin light chain 1	BC020403|Ftl1|14325|ferritin light chain 1	AK152385|Ftl1|14325|ferritin light chain 1	AK150481|Ftl1|14325|ferritin light chain 1	AK152393|Ftl1|14325|ferritin light chain 1	AK167410|Ftl1|14325|ferritin light chain 1	AK168862|Ftl1|14325|ferritin light chain 1	AK002253|Ftl1|14325|ferritin light chain 1	AK002547|Ftl1|14325|ferritin light chain 1	AK011029|Ftl1|14325|ferritin light chain 1	AK150480|Ftl1|14325|ferritin light chain 1	AK152030|Ftl1|14325|ferritin light chain 1	AK152564|Ftl1|14325|ferritin light chain 1	AK152612|Ftl1|14325|ferritin light chain 1	AK168310|Ftl1|14325|ferritin light chain 1	AK168735|Ftl1|14325|ferritin light chain 1	AK168866|Ftl1|14325|ferritin light chain 1	AK169100|Ftl1|14325|ferritin light chain 1	AK002242|Ftl1|14325|ferritin light chain 1	AK011009|Ftl1|14325|ferritin light chain 1	AK011244|Ftl1|14325|ferritin light chain 1	AK075620|Ftl1|14325|ferritin light chain 1	AK145265|Ftl1|14325|ferritin light chain 1	AK145658|Ftl1|14325|ferritin light chain 1	AK150960|Ftl1|14325|ferritin light chain 1	AK151255|Ftl1|14325|ferritin light chain 1	AK159574|Ftl1|14325|ferritin light chain 1	AK169159|Ftl1|14325|ferritin light chain 1	AK088647|Ftl1|14325|ferritin light chain 1	NM_010240|Ftl1|14325|ferritin light chain 1
mm9_v1_chr13_-_38085986_38086062	0.545625	AGCUGCC	BC011255|Ssr1|107513|signal sequence receptor, alpha	AK010884|Ssr1|107513|signal sequence receptor, alpha	AK167793|Ssr1|107513|signal sequence receptor, alpha	AK160285|Ssr1|107513|signal sequence receptor, alpha	AF326229|Ssr1|107513|signal sequence receptor, alpha	AF395811|Ssr1|107513|signal sequence receptor, alpha	AY993942|Ssr1|107513|signal sequence receptor, alpha	AK166235|Ssr1|107513|signal sequence receptor, alpha	AK031538|Ssr1|107513|signal sequence receptor, alpha	AB009295|Ssr1|107513|signal sequence receptor, alpha	NM_025965|Ssr1|107513|signal sequence receptor, alpha
mm9_v1_chr11_-_100481438_100481481	0.540746	AGCUGCC	BC055729|Dnajc7|56354|DnaJ (Hsp40) homolog, subfamily C, member 7	NM_019795|Dnajc7|56354|DnaJ (Hsp40) homolog, subfamily C, member 7
mm9_v1_chr9_+_44412931_44412987	0.539599	AGCUGCC	NM_001110826|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_007841|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_181324|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK148483|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK036648|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK054144|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chr3_-_92631151_92631173	0.531679	AGCUGCC	BC141372|Kprp|433619|keratinocyte expressed, proline-rich	NM_028629|Kprp|433619|keratinocyte expressed, proline-rich
mm9_v1_chr14_-_55036515_55036535	0.526191	AGCUGCC	AJ130943|Slc7a7|20540|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	AK150950|Slc7a7|20540|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	AK151718|Slc7a7|20540|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	NM_011405|Slc7a7|20540|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm9_v1_chr5_+_35104373_35104397	0.510431	AGCUGCC	AK042204|Htt|15194|huntingtin	NM_010414|Htt|15194|huntingtin
mm9_v1_chr9_+_63450444_63450525	0.508018	AGCUGCC	AK159897|Aagab|66939|alpha- and gamma-adaptin binding protein	NM_025857|Aagab|66939|alpha- and gamma-adaptin binding protein	BC027311|Aagab|66939|alpha- and gamma-adaptin binding protein	AK017714|Aagab|66939|alpha- and gamma-adaptin binding protein
mm9_v1_chr10_+_127176590_127176697	0.505686	AGCUGCC	BC058661|Zbtb39|320080|zinc finger and BTB domain containing 39	NM_198035|Zbtb39|320080|zinc finger and BTB domain containing 39	AK135409|Zbtb39|320080|zinc finger and BTB domain containing 39	AK155700|Zbtb39|320080|zinc finger and BTB domain containing 39	BC079569|Zbtb39|320080|zinc finger and BTB domain containing 39
mm9_v1_chr19_+_42007957_42008102	0.497293	AGCUGCC	NM_023740|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AK151505|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AK168042|Zdhhc16|74168|zinc finger, DHHC domain containing 16	BC010835|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AF176814|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AK183781|Zdhhc16|74168|zinc finger, DHHC domain containing 16
mm9_v1_chr1_+_36364557_36364660	0.484183	AGCUGCC	NM_001172205|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	NM_001172206|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	NM_145996|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK029237|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK085015|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK149839|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK156376|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK156622|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK156934|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK157607|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK150170|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK155555|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	BC027152|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)
mm9_v1_chr3_-_107889507_107889627	0.472363	AGCUGCC	BC049119|Ampd2|109674|adenosine monophosphate deaminase 2	NM_028779|Ampd2|109674|adenosine monophosphate deaminase 2	AK169980|Ampd2|109674|adenosine monophosphate deaminase 2	AK004759|Ampd2|109674|adenosine monophosphate deaminase 2
mm9_v1_chr16_+_22009551_22009592	0.457965	AGCUGCC	NM_029457|Senp2|75826|SUMO/sentrin specific peptidase 2	AK031030|Senp2|75826|SUMO/sentrin specific peptidase 2	AK015987|Senp2|75826|SUMO/sentrin specific peptidase 2	BC031652|Senp2|75826|SUMO/sentrin specific peptidase 2	AF368904|Senp2|75826|SUMO/sentrin specific peptidase 2
mm9_v1_chr2_-_153270059_153270214	0.455314	AGCUGCC	BC079552|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	AK157863|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	AK139459|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	NM_001001986|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene
mm9_v1_chr11_-_78325602_78325669	0.454809	AGCUGCC	AK156856|Tmem199|195040|transmembrane protein 199	AK158039|Tmem199|195040|transmembrane protein 199	BC050977|Tmem199|195040|transmembrane protein 199	BC147070|Tmem199|195040|transmembrane protein 199	BC147071|Tmem199|195040|transmembrane protein 199	NM_199199|Tmem199|195040|transmembrane protein 199
mm9_v1_chr18_-_12394830_12394911	0.444532	AGCUGCC	AK044878|Npc1|18145|Niemann Pick type C1	AK170880|Npc1|18145|Niemann Pick type C1	AK171371|Npc1|18145|Niemann Pick type C1	AK087174|Npc1|18145|Niemann Pick type C1	AF003348|Npc1|18145|Niemann Pick type C1	AK040367|Npc1|18145|Niemann Pick type C1	BC052437|Npc1|18145|Niemann Pick type C1	BC054539|Npc1|18145|Niemann Pick type C1	NM_008720|Npc1|18145|Niemann Pick type C1
mm9_v1_chr3_+_88140181_88140184	0.439374	AGCUGCC	AK143911|Smg5|229512|Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_178246|Smg5|229512|Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr9_+_107904919_107905018	0.428629	AGCUGCC	AK172921|Ip6k1|27399|inositol hexaphosphate kinase 1	AK037925|Ip6k1|27399|inositol hexaphosphate kinase 1	AK088872|Ip6k1|27399|inositol hexaphosphate kinase 1	BC053030|Ip6k1|27399|inositol hexaphosphate kinase 1	AK171310|Ip6k1|27399|inositol hexaphosphate kinase 1	AK166143|Ip6k1|27399|inositol hexaphosphate kinase 1	BC059006|Ip6k1|27399|inositol hexaphosphate kinase 1	NM_013785|Ip6k1|27399|inositol hexaphosphate kinase 1
mm9_v1_chr17_-_32421025_32421067	0.426692	AGCUGCC	BC082782|Brd4|57261|bromodomain containing 4	AK147545|Brd4|57261|bromodomain containing 4	BC138835|Brd4|57261|bromodomain containing 4	BC138834|Brd4|57261|bromodomain containing 4	AF461395|Brd4|57261|bromodomain containing 4	AF461396|Brd4|57261|bromodomain containing 4	NM_020508|Brd4|57261|bromodomain containing 4	NM_198094|Brd4|57261|bromodomain containing 4
mm9_v1_chr8_+_109394141_109394246	0.41703	AGCUGCC	NM_008217|Has3|15118|hyaluronan synthase 3	U86408|Has3|15118|hyaluronan synthase 3	BC138152|Has3|15118|hyaluronan synthase 3	BC138161|Has3|15118|hyaluronan synthase 3
mm9_v1_chr19_+_8893890_8893890	0.415347	AGCUGCC	NM_001081196|Hnrnpul2|68693|heterogeneous nuclear ribonucleoprotein U-like 2
mm9_v1_chr2_+_142888774_142888806	0.403641	AGCUGCC	AK011274|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	BC026794|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	AK012944|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	AK013871|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	NM_021335|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	AK005107|Snrpb2|20639|U2 small nuclear ribonucleoprotein B
mm9_v1_chr11_-_70501586_70501625	0.399687	AGCUGCC	NM_001190376|Camta2|216874|calmodulin binding transcription activator 2	NM_001190378|Camta2|216874|calmodulin binding transcription activator 2	NM_001190379|Camta2|216874|calmodulin binding transcription activator 2	NM_178116|Camta2|216874|calmodulin binding transcription activator 2
mm9_v1_chr4_-_140695648_140695720	0.399431	AGCUGCC	BC066992|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK171420|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK027934|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK145912|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK171702|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	NM_001025608|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	NM_174996|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed
mm9_v1_chr15_+_99532698_99532771	0.388003	AGCUGCC	NM_031842|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC059921|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	M25773|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	U66620|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC079839|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chrX_-_106029678_106029693	0.383727	AGCUGCC	AK050539|Brwd3|382236|bromodomain and WD repeat domain containing 3	AK163354|Brwd3|382236|bromodomain and WD repeat domain containing 3	NM_001081477|Brwd3|382236|bromodomain and WD repeat domain containing 3
mm9_v1_chrX_-_138740740_138740752	0.380072	AGCUGCC	AJ131398|Kcne1l|66240|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	NM_021487|Kcne1l|66240|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene
mm9_v1_chr5_-_114830457_114830513	0.369062	AGCUGCC	AK147714|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK163351|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK161199|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK028657|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK041516|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK145295|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK166505|Kctd10|330171|potassium channel tetramerisation domain containing 10	BC006935|Kctd10|330171|potassium channel tetramerisation domain containing 10	NM_001159941|Kctd10|330171|potassium channel tetramerisation domain containing 10	NM_026145|Kctd10|330171|potassium channel tetramerisation domain containing 10
mm9_v1_chr8_+_15011024_15011024	0.353162	AGCUGCC	AK013531|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11	NM_029116|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11
mm9_v1_chr16_-_4879787_4879850	0.346947	AGCUGCC	BC013706|Fam100a|207740|family with sequence similarity 100, member A	BC064081|Fam100a|207740|family with sequence similarity 100, member A	BC056472|Fam100a|207740|family with sequence similarity 100, member A	AK005316|Fam100a|207740|family with sequence similarity 100, member A	NM_145359|Fam100a|207740|family with sequence similarity 100, member A
mm9_v1_chr1_+_134776927_134777014	0.326341	AGCUGCC	AK036271|Lrrn2|16980|leucine rich repeat protein 2, neuronal	AK039216|Lrrn2|16980|leucine rich repeat protein 2, neuronal	NM_010732|Lrrn2|16980|leucine rich repeat protein 2, neuronal
mm9_v1_chr4_-_132895228_132895231	0.320705	AGCUGCC	AK172431|Wdtc1|230796|WD and tetratricopeptide repeats 1	NM_199306|Wdtc1|230796|WD and tetratricopeptide repeats 1
mm9_v1_chr9_+_44307218_44307218	0.2963	AGCUGCC	AY296058|Bcl9l|80288|B-cell CLL/lymphoma 9-like	NM_030256|Bcl9l|80288|B-cell CLL/lymphoma 9-like
mm9_v1_chr4_+_47366162_47366183	0.295475	AGCUGCC	BC063260|Tgfbr1|21812|transforming growth factor, beta receptor I	NM_009370|Tgfbr1|21812|transforming growth factor, beta receptor I	D25540|Tgfbr1|21812|transforming growth factor, beta receptor I	CT010393|Tgfbr1|21812|transforming growth factor, beta receptor I	D28526|Tgfbr1|21812|transforming growth factor, beta receptor I
mm9_v1_chrX_-_141921588_141921636	0.290173	AGCUGCC	AF461135|Amot|27494|angiomotin	NM_153319|Amot|27494|angiomotin	BC057638|Amot|27494|angiomotin
mm9_v1_chr1_-_155179844_155179930	0.2895	AGCUGCC	J02930|Lamc1|226519|laminin, gamma 1	AK144233|Lamc1|226519|laminin, gamma 1	J03484|Lamc1|226519|laminin, gamma 1	NM_010683|Lamc1|226519|laminin, gamma 1
mm9_v1_chr4_+_135411923_135412023	0.284591	AGCUGCC	NM_001080387|Srsf10|14105|serine/arginine-rich splicing factor 10	NM_010178|Srsf10|14105|serine/arginine-rich splicing factor 10	AK134076|Srsf10|14105|serine/arginine-rich splicing factor 10	AK134289|Srsf10|14105|serine/arginine-rich splicing factor 10
mm9_v1_chr9_+_66006025_66006053	0.270125	AGCUGCC	NM_010019|Dapk2|13143|death-associated protein kinase 2	AK158082|Dapk2|13143|death-associated protein kinase 2	AB018002|Dapk2|13143|death-associated protein kinase 2
mm9_v1_chr18_+_34918559_34918559	0.256222	AGCUGCC	BC057111|Fam53c|66306|family with sequence similarity 53, member C	NM_175104|Fam53c|66306|family with sequence similarity 53, member C
mm9_v1_chr6_+_65902564_65902776	0.254969	AGCUGCC	NM_001161773|4930544G11Rik|67653|RIKEN cDNA 4930544G11 gene	AK016035|4930544G11Rik|67653|RIKEN cDNA 4930544G11 gene	AK006363|4930544G11Rik|67653|RIKEN cDNA 4930544G11 gene	BC107181|4930544G11Rik|67653|RIKEN cDNA 4930544G11 gene	BC107182|4930544G11Rik|67653|RIKEN cDNA 4930544G11 gene	EU477372|4930544G11Rik|67653|RIKEN cDNA 4930544G11 gene
mm9_v1_chr11_+_4537719_4537795	0.254174	AGCUGCC	AK051387|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	AK048876|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	AK148105|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	BC013537|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	NM_029291|Ascc2|75452|activating signal cointegrator 1 complex subunit 2
mm9_v1_chr2_+_31007833_31007940	0.247727	AGCUGCC	NM_178760|Gpr107|277463|G protein-coupled receptor 107	AK082237|Gpr107|277463|G protein-coupled receptor 107	AK030433|Gpr107|277463|G protein-coupled receptor 107	AK154530|Gpr107|277463|G protein-coupled receptor 107	AK083025|Gpr107|277463|G protein-coupled receptor 107	AK088544|Gpr107|277463|G protein-coupled receptor 107	AK034815|Gpr107|277463|G protein-coupled receptor 107	BC117900|Gpr107|277463|G protein-coupled receptor 107	BC117901|Gpr107|277463|G protein-coupled receptor 107	BC092231|Gpr107|277463|G protein-coupled receptor 107	AK036987|Gpr107|277463|G protein-coupled receptor 107	AK142454|Gpr107|277463|G protein-coupled receptor 107	AK129407|Gpr107|277463|G protein-coupled receptor 107
mm9_v1_chr4_-_135050358_135050475	0.236945	AGCUGCC	BC057168|Nipal3|74552|NIPA-like domain containing 3	AK018640|Nipal3|74552|NIPA-like domain containing 3	AK138843|Nipal3|74552|NIPA-like domain containing 3	NM_028995|Nipal3|74552|NIPA-like domain containing 3	AK053937|Nipal3|74552|NIPA-like domain containing 3	AK082376|Nipal3|74552|NIPA-like domain containing 3	AK087811|Nipal3|74552|NIPA-like domain containing 3	AK148206|Nipal3|74552|NIPA-like domain containing 3	AK049696|Nipal3|74552|NIPA-like domain containing 3
mm9_v1_chr11_-_118109789_118109956	0.228191	AGCUGCC	BC057974|Cyth1|19157|cytohesin 1	AK078502|Cyth1|19157|cytohesin 1	AB013464|Cyth1|19157|cytohesin 1	AK220302|Cyth1|19157|cytohesin 1	AK172296|Cyth1|19157|cytohesin 1	AB035538|Cyth1|19157|cytohesin 1	AY126516|Cyth1|19157|cytohesin 1	NM_001112699|Cyth1|19157|cytohesin 1	NM_011180|Cyth1|19157|cytohesin 1
mm9_v1_chr6_+_66846377_66846490	0.227839	AGCUGCC	NM_001177556|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	NM_001177557|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	NM_001177559|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	NM_001177560|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	NM_025278|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK005561|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	BC040685|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK162342|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK166035|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK159872|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK148765|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK033422|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12
mm9_v1_chr2_+_160706405_160706468	0.224122	AGCUGCC	AK220228|Lpin3|64899|lipin 3	AF286724|Lpin3|64899|lipin 3	NM_022883|Lpin3|64899|lipin 3
mm9_v1_chr19_-_5609896_5610062	0.221945	AGCUGCC	AK195015|Kat5|81601|K(lysine) acetyltransferase 5	AK159568|Kat5|81601|K(lysine) acetyltransferase 5	AK160077|Kat5|81601|K(lysine) acetyltransferase 5	BC129967|Kat5|81601|K(lysine) acetyltransferase 5	AF528195|Kat5|81601|K(lysine) acetyltransferase 5	AF528196|Kat5|81601|K(lysine) acetyltransferase 5	BC129968|Kat5|81601|K(lysine) acetyltransferase 5	DQ139980|Kat5|81601|K(lysine) acetyltransferase 5	NM_178637|Kat5|81601|K(lysine) acetyltransferase 5	BC110675|Kat5|81601|K(lysine) acetyltransferase 5	AK143674|Kat5|81601|K(lysine) acetyltransferase 5	AK146352|Kat5|81601|K(lysine) acetyltransferase 5
mm9_v1_chr4_+_147415297_147415395	0.200892	AGCUGCC	AK150159|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	NM_001161798|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	AK149795|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	BC052466|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	AF404273|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	BC051017|Mthfr|17769|5,10-methylenetetrahydrofolate reductase
mm9_v1_chr10_+_73284612_73284690	0.194284	AGCUGCC	NM_001142735|Pcdh15|11994|protocadherin 15	NM_001142736|Pcdh15|11994|protocadherin 15	NM_001142737|Pcdh15|11994|protocadherin 15	NM_001142738|Pcdh15|11994|protocadherin 15	NM_001142739|Pcdh15|11994|protocadherin 15	NM_001142740|Pcdh15|11994|protocadherin 15	NM_001142741|Pcdh15|11994|protocadherin 15	NM_001142742|Pcdh15|11994|protocadherin 15	NM_001142743|Pcdh15|11994|protocadherin 15	NM_001142746|Pcdh15|11994|protocadherin 15	NM_001142747|Pcdh15|11994|protocadherin 15	NM_001142748|Pcdh15|11994|protocadherin 15	NM_001142760|Pcdh15|11994|protocadherin 15	NM_023115|Pcdh15|11994|protocadherin 15	AF281899|Pcdh15|11994|protocadherin 15	AY949849|Pcdh15|11994|protocadherin 15	DQ354396|Pcdh15|11994|protocadherin 15	DQ354397|Pcdh15|11994|protocadherin 15	DQ354398|Pcdh15|11994|protocadherin 15	DQ354399|Pcdh15|11994|protocadherin 15	DQ354400|Pcdh15|11994|protocadherin 15	DQ354401|Pcdh15|11994|protocadherin 15	DQ354402|Pcdh15|11994|protocadherin 15	DQ354403|Pcdh15|11994|protocadherin 15	DQ354404|Pcdh15|11994|protocadherin 15	DQ354405|Pcdh15|11994|protocadherin 15	DQ354406|Pcdh15|11994|protocadherin 15	DQ354407|Pcdh15|11994|protocadherin 15	DQ354408|Pcdh15|11994|protocadherin 15	DQ354409|Pcdh15|11994|protocadherin 15	DQ354410|Pcdh15|11994|protocadherin 15	DQ354411|Pcdh15|11994|protocadherin 15	DQ354412|Pcdh15|11994|protocadherin 15	DQ354413|Pcdh15|11994|protocadherin 15	DQ354414|Pcdh15|11994|protocadherin 15	DQ354415|Pcdh15|11994|protocadherin 15	AK139154|Pcdh15|11994|protocadherin 15	DQ354416|Pcdh15|11994|protocadherin 15	DQ354417|Pcdh15|11994|protocadherin 15	DQ354418|Pcdh15|11994|protocadherin 15
mm9_v1_chr4_+_13670425_13670448	0.190928	AGCUGCC	AK142006|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_001111026|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr1_+_74438182_74438368	0.182978	AGCUGCC	NM_153088|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	AK089478|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	BC049184|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	BC058085|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
mm9_v1_chr13_+_108948931_108948987	0.16613	AGCUGCC	AK010576|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK013216|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK014517|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK082676|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK157175|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK157504|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	NM_028042|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK082109|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	BC066170|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK045333|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK156267|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	BC056463|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	BC037200|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AJ427222|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8
mm9_v1_chr7_+_88907810_88907869	0.161781	AGCUGCC	AK169392|Fam103a1|67148|family with sequence similarity 103, member A1	AK011881|Fam103a1|67148|family with sequence similarity 103, member A1	NM_025997|Fam103a1|67148|family with sequence similarity 103, member A1	AK018614|Fam103a1|67148|family with sequence similarity 103, member A1	AK160347|Fam103a1|67148|family with sequence similarity 103, member A1	AK085230|Fam103a1|67148|family with sequence similarity 103, member A1	AK081301|Fam103a1|67148|family with sequence similarity 103, member A1
mm9_v1_chr11_+_50191220_50191290	0.13973	AGCUGCC	NM_021510|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	BC016459|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	AK052983|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	AK088169|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	Y14196|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	BC042187|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	BC056224|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1
mm9_v1_chr2_-_52601140_52601264	0.117399	AGCUGCC	AK214650|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK004604|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	NM_019667|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AB012611|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK044230|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK159699|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK017668|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK078244|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK168729|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	BC013818|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	DQ141211|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK035789|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
mm9_v1_chr2_+_103264218_103264240	0.115071	AGCUGCC	AK145214|Elf5|13711|E74-like factor 5	NM_010125|Elf5|13711|E74-like factor 5	AF049702|Elf5|13711|E74-like factor 5
mm9_v1_chr2_+_119625249_119625324	0.11503	AGCUGCC	BC066058|Tyro3|22174|TYRO3 protein tyrosine kinase 3	NM_019392|Tyro3|22174|TYRO3 protein tyrosine kinase 3	BC082325|Tyro3|22174|TYRO3 protein tyrosine kinase 3	X78103|Tyro3|22174|TYRO3 protein tyrosine kinase 3	U18933|Tyro3|22174|TYRO3 protein tyrosine kinase 3
mm9_v1_chr16_-_34514112_34514198	0.111367	AGCUGCC	BC157950|Kalrn|545156|kalirin, RhoGEF kinase	BC172101|Kalrn|545156|kalirin, RhoGEF kinase	NM_001164268|Kalrn|545156|kalirin, RhoGEF kinase	NM_177357|Kalrn|545156|kalirin, RhoGEF kinase	AK147314|Kalrn|545156|kalirin, RhoGEF kinase	AK147518|Kalrn|545156|kalirin, RhoGEF kinase
mm9_v1_chr5_+_31191349_31191378	0.095849	AGCUGCC	BC057349|Agbl5|231093|ATP/GTP binding protein-like 5	DQ867034|Agbl5|231093|ATP/GTP binding protein-like 5	DQ867035|Agbl5|231093|ATP/GTP binding protein-like 5	DQ867036|Agbl5|231093|ATP/GTP binding protein-like 5	DQ867037|Agbl5|231093|ATP/GTP binding protein-like 5	DQ867038|Agbl5|231093|ATP/GTP binding protein-like 5	NM_001048192|Agbl5|231093|ATP/GTP binding protein-like 5
mm9_v1_chr18_-_61885933_61886002	0.0916085	AGCUGCC	AF041060|Grpel2|17714|GrpE-like 2, mitochondrial	BC094583|Grpel2|17714|GrpE-like 2, mitochondrial	BC068232|Grpel2|17714|GrpE-like 2, mitochondrial	AK012634|Grpel2|17714|GrpE-like 2, mitochondrial	AK134455|Grpel2|17714|GrpE-like 2, mitochondrial	AK003011|Grpel2|17714|GrpE-like 2, mitochondrial	AK082983|Grpel2|17714|GrpE-like 2, mitochondrial	BC120747|Grpel2|17714|GrpE-like 2, mitochondrial	AK145493|Grpel2|17714|GrpE-like 2, mitochondrial	NM_021296|Grpel2|17714|GrpE-like 2, mitochondrial
mm9_v1_chr11_-_62352690_62352764	0.0789713	AGCUGCC	BC147794|Cenpv|73139|centromere protein V	BC147795|Cenpv|73139|centromere protein V	BC147835|Cenpv|73139|centromere protein V	BC147837|Cenpv|73139|centromere protein V	AK014046|Cenpv|73139|centromere protein V	NM_028448|Cenpv|73139|centromere protein V
mm9_v1_chr11_-_43649708_43649999	0.067485	AGCUGCC	BC138653|Adra1b|11548|adrenergic receptor, alpha 1b	BC138654|Adra1b|11548|adrenergic receptor, alpha 1b	AK043877|Adra1b|11548|adrenergic receptor, alpha 1b	NM_007416|Adra1b|11548|adrenergic receptor, alpha 1b	AK139448|Adra1b|11548|adrenergic receptor, alpha 1b
mm9_v1_chr5_-_135028197_135028344	0.0656939	AGCUGCC	BC039162|Clip2|269713|CAP-GLY domain containing linker protein 2	BC053048|Clip2|269713|CAP-GLY domain containing linker protein 2	NM_001039162|Clip2|269713|CAP-GLY domain containing linker protein 2	NM_009990|Clip2|269713|CAP-GLY domain containing linker protein 2
mm9_v1_chr4_-_137952372_137952372	0.0536254	AGCUGCC	AK134570|Fam43b|625638|family with sequence similarity 43, member B	NM_001081672|Fam43b|625638|family with sequence similarity 43, member B
mm9_v1_chr6_-_129422702_129422806	0.0474362	AGCUGCC	AY534909|Clec7a|56644|C-type lectin domain family 7, member a	BC027742|Clec7a|56644|C-type lectin domain family 7, member a	AF262985|Clec7a|56644|C-type lectin domain family 7, member a	NM_020008|Clec7a|56644|C-type lectin domain family 7, member a
mm9_v1_chrX_+_97170927_97171053	0.0466161	AGCUGCC	AK028502|Eda|13607|ectodysplasin-A	AF016627|Eda|13607|ectodysplasin-A	AF016628|Eda|13607|ectodysplasin-A	AF016629|Eda|13607|ectodysplasin-A	AF016630|Eda|13607|ectodysplasin-A	DQ168876|Eda|13607|ectodysplasin-A	DQ168877|Eda|13607|ectodysplasin-A	DQ168878|Eda|13607|ectodysplasin-A	DQ168879|Eda|13607|ectodysplasin-A	DQ168880|Eda|13607|ectodysplasin-A	DQ168881|Eda|13607|ectodysplasin-A	NM_001177937|Eda|13607|ectodysplasin-A	NM_001177938|Eda|13607|ectodysplasin-A	NM_001177939|Eda|13607|ectodysplasin-A	NM_001177940|Eda|13607|ectodysplasin-A	NM_001177941|Eda|13607|ectodysplasin-A	NM_001177942|Eda|13607|ectodysplasin-A	NM_001177943|Eda|13607|ectodysplasin-A	NM_001177944|Eda|13607|ectodysplasin-A	NM_010099|Eda|13607|ectodysplasin-A	AF016631|Eda|13607|ectodysplasin-A	AJ243657|Eda|13607|ectodysplasin-A	AK040754|Eda|13607|ectodysplasin-A	AF004435|Eda|13607|ectodysplasin-A	AJ243658|Eda|13607|ectodysplasin-A	AK137551|Eda|13607|ectodysplasin-A	BC125387|Eda|13607|ectodysplasin-A	BC144790|Eda|13607|ectodysplasin-A	BC144791|Eda|13607|ectodysplasin-A
mm9_v1_chr1_-_136258503_136258598	0.0391834	AGCUGCC	BC003210|Tmem183a|57439|transmembrane protein 183A	AK152852|Tmem183a|57439|transmembrane protein 183A	AK168331|Tmem183a|57439|transmembrane protein 183A	AK006183|Tmem183a|57439|transmembrane protein 183A	AB041592|Tmem183a|57439|transmembrane protein 183A	AK007779|Tmem183a|57439|transmembrane protein 183A	AK004922|Tmem183a|57439|transmembrane protein 183A	NM_001042485|Tmem183a|57439|transmembrane protein 183A	NM_020588|Tmem183a|57439|transmembrane protein 183A
mm9_v1_chr11_-_65601774_65601862	0.0260051	AGCUGCC	AK139777|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK044534|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK044698|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK036928|Map2k4|26398|mitogen-activated protein kinase kinase 4	NM_009157|Map2k4|26398|mitogen-activated protein kinase kinase 4
mm9_v1_chr18_-_75120759_75120936	0.0254748	AGCUGCC	BC020991|Lipg|16891|lipase, endothelial	AF118768|Lipg|16891|lipase, endothelial	AK090224|Lipg|16891|lipase, endothelial	AK152430|Lipg|16891|lipase, endothelial	AK152161|Lipg|16891|lipase, endothelial	AK153541|Lipg|16891|lipase, endothelial	AK152872|Lipg|16891|lipase, endothelial	AK172101|Lipg|16891|lipase, endothelial	NM_010720|Lipg|16891|lipase, endothelial
mm9_v1_chr12_+_88367442_88367513	0.0243869	AGCUGCC	AK034410|Tmem63c|217733|transmembrane protein 63c	AK043536|Tmem63c|217733|transmembrane protein 63c	BC056936|Tmem63c|217733|transmembrane protein 63c	BC057088|Tmem63c|217733|transmembrane protein 63c	NM_172583|Tmem63c|217733|transmembrane protein 63c
mm9_v1_chr7_+_134985164_134985421	0.0199883	AGCUGCC	AK145909|Stx4a|20909|syntaxin 4A (placental)	BC011491|Stx4a|20909|syntaxin 4A (placental)	NM_009294|Stx4a|20909|syntaxin 4A (placental)	AK161971|Stx4a|20909|syntaxin 4A (placental)	BC052023|Stx4a|20909|syntaxin 4A (placental)
mm9_v1_chr6_+_127837606_127837652	0.0187179	AGCUGCC	AK087294|Tspan11|68498|tetraspanin 11	NM_026743|Tspan11|68498|tetraspanin 11	AK090022|Tspan11|68498|tetraspanin 11	AK053788|Tspan11|68498|tetraspanin 11
mm9_v1_chr14_+_31638767_31638861	0.0116692	AGCUGCC	AK007740|Tmem110|69179|transmembrane protein 110	NM_028839|Tmem110|69179|transmembrane protein 110	AK009341|Tmem110|69179|transmembrane protein 110	AK076341|Tmem110|69179|transmembrane protein 110	AK149088|Tmem110|69179|transmembrane protein 110	AK155257|Tmem110|69179|transmembrane protein 110
mm9_v1_chr10_+_52137324_52137453	0.00749353	AGCUGCC	AK155620|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	NM_030250|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	AK167939|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	AK167741|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	BC018372|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	BC003223|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)
mm9_v1_chr16_-_20734583_20734583	0.00488179	AGCUGCC	AK047512|Thpo|21832|thrombopoietin	NM_009379|Thpo|21832|thrombopoietin
