mm9_v1_chrX_+_33868347_33868594	10.2226	AGGUAGU	AK167341|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK016522|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK147751|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	NM_028894|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	BC120688|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	BC120690|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK030866|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3
mm9_v1_chr15_-_78136032_78136039	6.61075	AGGUAGU	M29855|Csf2rb2|12984|colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	NM_007781|Csf2rb2|12984|colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)
mm9_v1_chrX_+_126284271_126284381	5.92672	AGGUAGU	AK153986|Diap2|54004|diaphanous homolog 2 (Drosophila)	NM_172493|Diap2|54004|diaphanous homolog 2 (Drosophila)	AK088648|Diap2|54004|diaphanous homolog 2 (Drosophila)	AY312280|Diap2|54004|diaphanous homolog 2 (Drosophila)	BC100759|Diap2|54004|diaphanous homolog 2 (Drosophila)
mm9_v1_chr5_+_53981453_53981812	5.88464	AGGUAGU	NM_009035|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	S63463|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK152746|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	X17459|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK028363|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK132145|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK139087|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	NM_001080927|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region
mm9_v1_chr11_+_67399999_67400271	5.53107	AGGUAGU	AK031455|Gas7|14457|growth arrest specific 7	NM_001109657|Gas7|14457|growth arrest specific 7	AK154463|Gas7|14457|growth arrest specific 7	AK017394|Gas7|14457|growth arrest specific 7
mm9_v1_chr4_+_140257340_140257464	5.51592	AGGUAGU	NM_173867|Rcc2|108911|regulator of chromosome condensation 2	BC060624|Rcc2|108911|regulator of chromosome condensation 2	AK076040|Rcc2|108911|regulator of chromosome condensation 2	BC086666|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr11_+_67346499_67346579	5.3891	AGGUAGU	NM_008088|Gas7|14457|growth arrest specific 7	BC120528|Gas7|14457|growth arrest specific 7	BC120530|Gas7|14457|growth arrest specific 7
mm9_v1_chr10_-_119913990_119913990	5.36138	AGGUAGU	NM_010441|Hmga2|15364|high mobility group AT-hook 2
mm9_v1_chr9_-_103268075_103268109	4.85788	AGGUAGU	NM_001134426|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	NM_175565|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	NM_175833|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3
mm9_v1_chr14_+_31528034_31528081	4.76873	AGGUAGU	NM_019460|Sfmbt1|54650|Scm-like with four mbt domains 1	BC066188|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr3_+_102862151_102862295	4.5472	AGGUAGU	X13664|Nras|18176|neuroblastoma ras oncogene	NM_010937|Nras|18176|neuroblastoma ras oncogene	AK011704|Nras|18176|neuroblastoma ras oncogene	AK165960|Nras|18176|neuroblastoma ras oncogene	AK150357|Nras|18176|neuroblastoma ras oncogene	BC058755|Nras|18176|neuroblastoma ras oncogene	BC014704|Nras|18176|neuroblastoma ras oncogene	BC051443|Nras|18176|neuroblastoma ras oncogene
mm9_v1_chr14_+_31528352_31528352	4.35266	AGGUAGU	AK160573|Sfmbt1|54650|Scm-like with four mbt domains 1	NM_001166531|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr8_+_96996662_96996662	4.14359	AGGUAGU	FJ889356|Nlrc5|434341|NLR family, CARD domain containing 5	NM_001033207|Nlrc5|434341|NLR family, CARD domain containing 5
mm9_v1_chr14_+_31528800_31528932	4.11066	AGGUAGU	AK154826|Sfmbt1|54650|Scm-like with four mbt domains 1	NM_001166532|Sfmbt1|54650|Scm-like with four mbt domains 1	BC036972|Sfmbt1|54650|Scm-like with four mbt domains 1	AK142330|Sfmbt1|54650|Scm-like with four mbt domains 1	BC018217|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr5_+_53946944_53947017	4.10755	AGGUAGU	AY512934|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	NM_001080928|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region
mm9_v1_chr7_+_87171113_87171302	3.97295	AGGUAGU	NM_175433|Zfp710|209225|zinc finger protein 710	AK155416|Zfp710|209225|zinc finger protein 710	BC060641|Zfp710|209225|zinc finger protein 710	AK083979|Zfp710|209225|zinc finger protein 710	BC058640|Zfp710|209225|zinc finger protein 710
mm9_v1_chr9_+_72655019_72655080	3.88332	AGGUAGU	AY630257|Prtg|235472|protogenin homolog (Gallus gallus)	DQ360114|Prtg|235472|protogenin homolog (Gallus gallus)	NM_175485|Prtg|235472|protogenin homolog (Gallus gallus)
mm9_v1_chr5_-_130478687_130478765	3.81858	AGGUAGU	AK159564|Gusb|110006|glucuronidase, beta	AK041058|Gusb|110006|glucuronidase, beta	AK150048|Gusb|110006|glucuronidase, beta	AK151802|Gusb|110006|glucuronidase, beta	AK152206|Gusb|110006|glucuronidase, beta	AK159163|Gusb|110006|glucuronidase, beta	AK159526|Gusb|110006|glucuronidase, beta	AK159804|Gusb|110006|glucuronidase, beta	AK162436|Gusb|110006|glucuronidase, beta	J03047|Gusb|110006|glucuronidase, beta	M19279|Gusb|110006|glucuronidase, beta	M28540|Gusb|110006|glucuronidase, beta	M28541|Gusb|110006|glucuronidase, beta	M63836|Gusb|110006|glucuronidase, beta	NM_010368|Gusb|110006|glucuronidase, beta	BC071226|Gusb|110006|glucuronidase, beta	AK149814|Gusb|110006|glucuronidase, beta	AK076109|Gusb|110006|glucuronidase, beta	BC004616|Gusb|110006|glucuronidase, beta	AK002832|Gusb|110006|glucuronidase, beta	AK136519|Gusb|110006|glucuronidase, beta
mm9_v1_chr17_+_31194623_31194718	3.78008	AGGUAGU	NM_009593|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	AF323659|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	Z48745|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	U34920|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	BC119471|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	AK037433|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1
mm9_v1_chr16_+_87699143_87699302	3.53567	AGGUAGU	D86603|Bach1|12013|BTB and CNC homology 1	AK140765|Bach1|12013|BTB and CNC homology 1	AK140903|Bach1|12013|BTB and CNC homology 1	NM_007520|Bach1|12013|BTB and CNC homology 1	AK030871|Bach1|12013|BTB and CNC homology 1	AK141405|Bach1|12013|BTB and CNC homology 1	BC057894|Bach1|12013|BTB and CNC homology 1
mm9_v1_chr11_-_76660476_76660569	3.52386	AGGUAGU	AK142583|Cpd|12874|carboxypeptidase D	AK134907|Cpd|12874|carboxypeptidase D	AK137737|Cpd|12874|carboxypeptidase D	D85391|Cpd|12874|carboxypeptidase D	NM_007754|Cpd|12874|carboxypeptidase D
mm9_v1_chr13_-_8870975_8870975	3.50238	AGGUAGU	NM_001039388|Wdr37|207615|WD repeat domain 37
mm9_v1_chr7_+_87169699_87169719	3.43955	AGGUAGU	AK154953|Zfp710|209225|zinc finger protein 710	NM_001145999|Zfp710|209225|zinc finger protein 710	NM_001146000|Zfp710|209225|zinc finger protein 710	AK154871|Zfp710|209225|zinc finger protein 710
mm9_v1_chr2_-_38640034_38640034	3.27761	AGGUAGU	NM_001159548|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	NM_001159549|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1
mm9_v1_chr4_+_62021728_62021759	3.21917	AGGUAGU	NM_175090|Slc31a1|20529|solute carrier family 31, member 1	AK151337|Slc31a1|20529|solute carrier family 31, member 1
mm9_v1_chr2_-_38781939_38781980	3.11941	AGGUAGU	U14666|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	NM_010264|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	U09563|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1
mm9_v1_chr1_-_37592976_37593103	3.06714	AGGUAGU	AB053217|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	AK163327|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	AK082702|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	NM_173870|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm9_v1_chr8_-_86628606_86628694	3.05831	AGGUAGU	AK153305|Dcaf15|212123|DDB1 and CUL4 associated factor 15	AK155000|Dcaf15|212123|DDB1 and CUL4 associated factor 15	NM_172502|Dcaf15|212123|DDB1 and CUL4 associated factor 15	BC057552|Dcaf15|212123|DDB1 and CUL4 associated factor 15	AK144808|Dcaf15|212123|DDB1 and CUL4 associated factor 15	AK032982|Dcaf15|212123|DDB1 and CUL4 associated factor 15
mm9_v1_chr17_+_27693518_27693641	3.03323	AGGUAGU	NM_001025427|Hmga1|15361|high mobility group AT-hook 1	NM_001039356|Hmga1|15361|high mobility group AT-hook 1	NM_001166535|Hmga1|15361|high mobility group AT-hook 1	NM_001166536|Hmga1|15361|high mobility group AT-hook 1	NM_001166539|Hmga1|15361|high mobility group AT-hook 1	NM_001166540|Hmga1|15361|high mobility group AT-hook 1	NM_001166541|Hmga1|15361|high mobility group AT-hook 1	NM_001166542|Hmga1|15361|high mobility group AT-hook 1	NM_001166543|Hmga1|15361|high mobility group AT-hook 1	NM_001166544|Hmga1|15361|high mobility group AT-hook 1	NM_001166545|Hmga1|15361|high mobility group AT-hook 1	NM_001166546|Hmga1|15361|high mobility group AT-hook 1	NM_001166537|Hmga1|15361|high mobility group AT-hook 1	NM_016660|Hmga1|15361|high mobility group AT-hook 1	AK171334|Hmga1|15361|high mobility group AT-hook 1	AK155661|Hmga1|15361|high mobility group AT-hook 1	BC013455|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	AK010617|Hmga1|15361|high mobility group AT-hook 1	AK169783|Hmga1|15361|high mobility group AT-hook 1	NM_001166476|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	NM_001166477|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	AK154957|Hmga1|15361|high mobility group AT-hook 1	AK160036|Hmga1|15361|high mobility group AT-hook 1	BC008125|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	BC093496|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1
mm9_v1_chr8_-_60131768_60131885	2.8618	AGGUAGU	AF349573|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK030683|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK033427|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK036523|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	BC052461|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK041791|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_001167981|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_144731|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7
mm9_v1_chr1_+_135027742_135027959	2.69413	AGGUAGU	NM_133819|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK082957|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK170862|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK167565|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	BC006897|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	BC058078|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b
mm9_v1_chr5_-_66542161_66542216	2.63808	AGGUAGU	AK035620|Rbm47|245945|RNA binding motif protein 47	AK142584|Rbm47|245945|RNA binding motif protein 47	AK085733|Rbm47|245945|RNA binding motif protein 47	NM_178446|Rbm47|245945|RNA binding motif protein 47	BC112902|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr19_+_40905768_40905801	2.63181	AGGUAGU	AK052506|Ccnj|240665|cyclin J	NM_172839|Ccnj|240665|cyclin J	AK157841|Ccnj|240665|cyclin J	BC120921|Ccnj|240665|cyclin J	BC120922|Ccnj|240665|cyclin J	BC117559|Ccnj|240665|cyclin J
mm9_v1_chr5_-_66543123_66543228	2.57232	AGGUAGU	AK170082|Rbm47|245945|RNA binding motif protein 47	NM_001127382|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr5_-_66489416_66489417	2.48422	AGGUAGU	NM_139065|Rbm47|245945|RNA binding motif protein 47	BC013481|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr2_-_152223710_152223930	2.45575	AGGUAGU	BC067019|Sox12|20667|SRY-box containing gene 12	NM_011438|Sox12|20667|SRY-box containing gene 12
mm9_v1_chr6_-_49164952_49164952	2.41414	AGGUAGU	AK147140|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	NM_023670|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3
mm9_v1_chr9_+_111214242_111214242	2.4076	AGGUAGU	AK079552|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1	NM_001164659|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1
mm9_v1_chr12_+_3806955_3807159	2.35108	AGGUAGU	NM_007872|Dnmt3a|13435|DNA methyltransferase 3A	AF503867|Dnmt3a|13435|DNA methyltransferase 3A	AK090132|Dnmt3a|13435|DNA methyltransferase 3A	AK147676|Dnmt3a|13435|DNA methyltransferase 3A	BC007466|Dnmt3a|13435|DNA methyltransferase 3A	AF068625|Dnmt3a|13435|DNA methyltransferase 3A	AK147263|Dnmt3a|13435|DNA methyltransferase 3A	AK147627|Dnmt3a|13435|DNA methyltransferase 3A	AK147642|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr6_+_4697305_4697405	2.30653	AGGUAGU	NM_001040611|Peg10|170676|paternally expressed 10	NM_130877|Peg10|170676|paternally expressed 10	AB091827|Peg10|170676|paternally expressed 10	AJ006464|Peg10|170676|paternally expressed 10
mm9_v1_chr12_+_101437735_101437896	2.29702	AGGUAGU	AK150978|Calm1|12313|calmodulin 1	AK151784|Calm1|12313|calmodulin 1	AK151992|Calm1|12313|calmodulin 1	AK159762|Calm1|12313|calmodulin 1	AK160057|Calm1|12313|calmodulin 1	AK160508|Calm1|12313|calmodulin 1	AK162314|Calm1|12313|calmodulin 1	AK169027|Calm1|12313|calmodulin 1	AK167353|Calm1|12313|calmodulin 1	M19381|Calm1|12313|calmodulin 1	AK004673|Calm1|12313|calmodulin 1	AK151923|Calm1|12313|calmodulin 1	AK152148|Calm1|12313|calmodulin 1	AK152850|Calm1|12313|calmodulin 1	AK153348|Calm1|12313|calmodulin 1	AK153546|Calm1|12313|calmodulin 1	AK168002|Calm1|12313|calmodulin 1	AK168803|Calm1|12313|calmodulin 1	AK169055|Calm1|12313|calmodulin 1	AK169640|Calm1|12313|calmodulin 1	AK153426|Calm1|12313|calmodulin 1	AK013695|Calm1|12313|calmodulin 1	AK088141|Calm1|12313|calmodulin 1	AK150288|Calm1|12313|calmodulin 1	AK151001|Calm1|12313|calmodulin 1	AK151552|Calm1|12313|calmodulin 1	AK152897|Calm1|12313|calmodulin 1	AK152719|Calm1|12313|calmodulin 1	AK166308|Calm1|12313|calmodulin 1	AK168663|Calm1|12313|calmodulin 1	AK152715|Calm1|12313|calmodulin 1	AK153004|Calm1|12313|calmodulin 1	BC054805|Calm1|12313|calmodulin 1	NM_009790|Calm1|12313|calmodulin 1	AK161302|Calm1|12313|calmodulin 1	AK168241|Calm1|12313|calmodulin 1	X61432|Calm1|12313|calmodulin 1
mm9_v1_chr18_-_81183260_81183316	2.26333	AGGUAGU	BC072631|Sall3|20689|sal-like 3 (Drosophila)	NM_178280|Sall3|20689|sal-like 3 (Drosophila)
mm9_v1_chr13_-_112599181_112599204	2.24812	AGGUAGU	AB014614|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	AF117340|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	NM_011945|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1
mm9_v1_chr15_-_25343483_25343542	2.21709	AGGUAGU	AK159486|Basp1|70350|brain abundant, membrane attached signal protein 1	AK011545|Basp1|70350|brain abundant, membrane attached signal protein 1	AK046868|Basp1|70350|brain abundant, membrane attached signal protein 1	NM_027395|Basp1|70350|brain abundant, membrane attached signal protein 1
mm9_v1_chr2_-_153355706_153355706	2.21552	AGGUAGU	AK147524|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	NM_001134300|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene
mm9_v1_chr4_-_82505534_82505564	2.16708	AGGUAGU	NM_026647|Zdhhc21|68268|zinc finger, DHHC domain containing 21
mm9_v1_chr13_+_35833181_35833351	2.1053	AGGUAGU	BC062123|Cdyl|12593|chromodomain protein, Y chromosome-like	AK156509|Cdyl|12593|chromodomain protein, Y chromosome-like	NM_001123386|Cdyl|12593|chromodomain protein, Y chromosome-like
mm9_v1_chr8_-_28285056_28285121	1.95028	AGGUAGU	AK014696|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK089792|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	BC125400|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	BC132094|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK166735|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK086797|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK151024|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK030769|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	NM_001080813|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	NM_029423|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)
mm9_v1_chr8_-_125222837_125223008	1.94074	AGGUAGU	BC141396|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	BC151156|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AF038029|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_009824|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr8_-_125201971_125202083	1.93123	AGGUAGU	AK033680|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AK041887|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_001109873|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_177289|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr11_-_77421308_77421363	1.92379	AGGUAGU	AK143530|Taok1|216965|TAO kinase 1	NM_144825|Taok1|216965|TAO kinase 1
mm9_v1_chrX_-_45816308_45816348	1.91158	AGGUAGU	AK155709|Elf4|56501|E74-like factor 4 (ets domain transcription factor)	NM_019680|Elf4|56501|E74-like factor 4 (ets domain transcription factor)	AK084896|Elf4|56501|E74-like factor 4 (ets domain transcription factor)
mm9_v1_chr6_-_115944822_115945034	1.84968	AGGUAGU	AY688678|Plxnd1|67784|plexin D1	AK147513|Plxnd1|67784|plexin D1	NM_026376|Plxnd1|67784|plexin D1
mm9_v1_chr13_+_35751730_35751781	1.81988	AGGUAGU	NM_009881|Cdyl|12593|chromodomain protein, Y chromosome-like	AF081260|Cdyl|12593|chromodomain protein, Y chromosome-like	AF081261|Cdyl|12593|chromodomain protein, Y chromosome-like	BC055103|Cdyl|12593|chromodomain protein, Y chromosome-like
mm9_v1_chr11_-_79337251_79337263	1.78775	AGGUAGU	NM_001077496|Evi2b|216984|ecotropic viral integration site 2b
mm9_v1_chr17_-_26232411_26232456	1.71987	AGGUAGU	AF153451|Nme4|56520|non-metastatic cells 4, protein expressed in	NM_019731|Nme4|56520|non-metastatic cells 4, protein expressed in	AK011573|Nme4|56520|non-metastatic cells 4, protein expressed in	AK017724|Nme4|56520|non-metastatic cells 4, protein expressed in	AF288690|Nme4|56520|non-metastatic cells 4, protein expressed in	BC027277|Nme4|56520|non-metastatic cells 4, protein expressed in	AK012805|Nme4|56520|non-metastatic cells 4, protein expressed in
mm9_v1_chr1_-_157820378_157820386	1.71163	AGGUAGU	AK044664|Cep350|74081|centrosomal protein 350	NM_001039184|Cep350|74081|centrosomal protein 350
mm9_v1_chr7_-_148620437_148620500	1.71157	AGGUAGU	AK162400|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	BC037949|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	AK155276|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	NM_001177576|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm9_v1_chr2_+_28496752_28496773	1.69398	AGGUAGU	AK030318|Tsc1|64930|tuberous sclerosis 1	AJ271912|Tsc1|64930|tuberous sclerosis 1	AK147428|Tsc1|64930|tuberous sclerosis 1	NM_022887|Tsc1|64930|tuberous sclerosis 1	AK083363|Tsc1|64930|tuberous sclerosis 1	AK078140|Tsc1|64930|tuberous sclerosis 1	AK154416|Tsc1|64930|tuberous sclerosis 1
mm9_v1_chrX_-_71330931_71331012	1.67889	AGGUAGU	AF158181|Mecp2|17257|methyl CpG binding protein 2	NM_010788|Mecp2|17257|methyl CpG binding protein 2	AK041453|Mecp2|17257|methyl CpG binding protein 2	BC027153|Mecp2|17257|methyl CpG binding protein 2	AK158664|Mecp2|17257|methyl CpG binding protein 2	NM_001081979|Mecp2|17257|methyl CpG binding protein 2
mm9_v1_chr4_-_133574655_133574730	1.56131	AGGUAGU	AB221669|Lin28a|83557|lin-28 homolog A (C. elegans)	BC068304|Lin28a|83557|lin-28 homolog A (C. elegans)	AF521097|Lin28a|83557|lin-28 homolog A (C. elegans)	NM_145833|Lin28a|83557|lin-28 homolog A (C. elegans)
mm9_v1_chr2_-_153270059_153270214	1.53929	AGGUAGU	BC079552|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	AK157863|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	AK139459|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	NM_001001986|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene
mm9_v1_chr11_-_115465172_115465241	1.45967	AGGUAGU	BC056424|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	BC110676|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK082327|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK147882|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK132183|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK031086|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK122212|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	BC085617|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	NM_173048|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3
mm9_v1_chr18_+_11052464_11052648	1.42112	AGGUAGU	AK053151|Gata6|14465|GATA binding protein 6	NM_010258|Gata6|14465|GATA binding protein 6	AK142381|Gata6|14465|GATA binding protein 6
mm9_v1_chr6_-_52154455_52154585	1.42025	AGGUAGU	M36604|Hoxa5|15402|homeobox A5	X16840|Hoxa5|15402|homeobox A5	M28021|Hoxa5|15402|homeobox A5	NM_010453|Hoxa5|15402|homeobox A5
mm9_v1_chr19_+_23833310_23833547	1.39139	AGGUAGU	NM_177034|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147583|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147623|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	BC141181|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1
mm9_v1_chr1_+_95700522_95700570	1.38593	AGGUAGU	AK028397|Ing5|66262|inhibitor of growth family, member 5	NM_025454|Ing5|66262|inhibitor of growth family, member 5	AK007536|Ing5|66262|inhibitor of growth family, member 5	BC064674|Ing5|66262|inhibitor of growth family, member 5	AK009312|Ing5|66262|inhibitor of growth family, member 5	AK028010|Ing5|66262|inhibitor of growth family, member 5	AK145695|Ing5|66262|inhibitor of growth family, member 5
mm9_v1_chr10_+_95403283_95403412	1.37251	AGGUAGU	AK042055|Eea1|216238|early endosome antigen 1	NM_001001932|Eea1|216238|early endosome antigen 1	AK082278|Eea1|216238|early endosome antigen 1	AK163235|Eea1|216238|early endosome antigen 1	BC021363|Eea1|216238|early endosome antigen 1	BC075637|Eea1|216238|early endosome antigen 1	AK046231|Eea1|216238|early endosome antigen 1	AK040844|Eea1|216238|early endosome antigen 1
mm9_v1_chr4_+_6292817_6292904	1.32732	AGGUAGU	AK169415|Sdcbp|53378|syndecan binding protein	NM_001098227|Sdcbp|53378|syndecan binding protein	NM_016807|Sdcbp|53378|syndecan binding protein	AK033412|Sdcbp|53378|syndecan binding protein	AF003693|Sdcbp|53378|syndecan binding protein	AK150721|Sdcbp|53378|syndecan binding protein	AK152080|Sdcbp|53378|syndecan binding protein	AK159677|Sdcbp|53378|syndecan binding protein	AK150623|Sdcbp|53378|syndecan binding protein	AK152552|Sdcbp|53378|syndecan binding protein	AK153112|Sdcbp|53378|syndecan binding protein	AK169219|Sdcbp|53378|syndecan binding protein	AK045668|Sdcbp|53378|syndecan binding protein	AK168004|Sdcbp|53378|syndecan binding protein	AK028429|Sdcbp|53378|syndecan binding protein	AK146085|Sdcbp|53378|syndecan binding protein	AK150544|Sdcbp|53378|syndecan binding protein	AK150996|Sdcbp|53378|syndecan binding protein	AK151050|Sdcbp|53378|syndecan binding protein	AK152017|Sdcbp|53378|syndecan binding protein	AK152434|Sdcbp|53378|syndecan binding protein	AK153042|Sdcbp|53378|syndecan binding protein	AK159538|Sdcbp|53378|syndecan binding protein	AK169687|Sdcbp|53378|syndecan binding protein	AK171162|Sdcbp|53378|syndecan binding protein	AK150707|Sdcbp|53378|syndecan binding protein	AK152001|Sdcbp|53378|syndecan binding protein	AK152577|Sdcbp|53378|syndecan binding protein	AK152855|Sdcbp|53378|syndecan binding protein	AK152109|Sdcbp|53378|syndecan binding protein	AK150801|Sdcbp|53378|syndecan binding protein	AK014678|Sdcbp|53378|syndecan binding protein	AK150321|Sdcbp|53378|syndecan binding protein	AK150661|Sdcbp|53378|syndecan binding protein	AK150736|Sdcbp|53378|syndecan binding protein	AK159124|Sdcbp|53378|syndecan binding protein	AK165657|Sdcbp|53378|syndecan binding protein	AK167513|Sdcbp|53378|syndecan binding protein	AK168777|Sdcbp|53378|syndecan binding protein	BC019400|Sdcbp|53378|syndecan binding protein	AK150278|Sdcbp|53378|syndecan binding protein	AF077527|Sdcbp|53378|syndecan binding protein	AK159323|Sdcbp|53378|syndecan binding protein
mm9_v1_chr15_+_10994444_10994583	1.30049	AGGUAGU	AK145096|Adamts12|239337|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12	AK135354|Adamts12|239337|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12	NM_175501|Adamts12|239337|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12	AK054015|Adamts12|239337|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12	AK048612|Adamts12|239337|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12
mm9_v1_chr15_-_89209682_89209731	1.28526	AGGUAGU	BC087962|Odf3b|70113|outer dense fiber of sperm tails 3B	NM_001013022|Odf3b|70113|outer dense fiber of sperm tails 3B
mm9_v1_chr11_+_54251680_54251744	1.24796	AGGUAGU	NM_173753|Fnip1|216742|folliculin interacting protein 1	BC079892|Fnip1|216742|folliculin interacting protein 1	AK122574|Fnip1|216742|folliculin interacting protein 1
mm9_v1_chr2_+_152891690_152891738	1.20852	AGGUAGU	BC020535|BC020535|228788|cDNA sequence BC020535	NM_145536|BC020535|228788|cDNA sequence BC020535
mm9_v1_chr15_+_99803210_99803320	1.2083	AGGUAGU	NM_001024526|Larp4|207214|La ribonucleoprotein domain family, member 4	AK165392|Larp4|207214|La ribonucleoprotein domain family, member 4	AK172198|Larp4|207214|La ribonucleoprotein domain family, member 4	AK049756|Larp4|207214|La ribonucleoprotein domain family, member 4	BC075726|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr3_+_93246251_93246251	1.1691	AGGUAGU	NM_001163098|Tchh|99681|trichohyalin
mm9_v1_chr2_+_112219335_112219462	1.16196	AGGUAGU	AK036861|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	NM_024254|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK168639|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK049599|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK151464|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK010654|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK152570|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC003216|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC012402|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC080661|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK162183|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene
mm9_v1_chr15_+_80064503_80064578	1.15406	AGGUAGU	AK163389|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	NM_178719|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK041184|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK038466|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK044773|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK050546|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK080375|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	BC094597|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)
mm9_v1_chr11_-_95867076_95867257	1.11758	AGGUAGU	AF061569|Igf2bp1|140486|insulin-like growth factor 2 mRNA binding protein 1	AK044850|Igf2bp1|140486|insulin-like growth factor 2 mRNA binding protein 1	AK013940|Igf2bp1|140486|insulin-like growth factor 2 mRNA binding protein 1	BC051679|Igf2bp1|140486|insulin-like growth factor 2 mRNA binding protein 1	NM_009951|Igf2bp1|140486|insulin-like growth factor 2 mRNA binding protein 1
mm9_v1_chr10_-_23069692_23069708	1.1141	AGGUAGU	BC120898|Eya4|14051|eyes absent 4 homolog (Drosophila)	BC120899|Eya4|14051|eyes absent 4 homolog (Drosophila)	AK041625|Eya4|14051|eyes absent 4 homolog (Drosophila)	NM_010167|Eya4|14051|eyes absent 4 homolog (Drosophila)
mm9_v1_chr11_-_86171026_86171057	1.09942	AGGUAGU	NM_001080931|Med13|327987|mediator complex subunit 13
mm9_v1_chr17_+_74927634_74927745	1.0826	AGGUAGU	NM_007566|Birc6|12211|baculoviral IAP repeat-containing 6	Y17267|Birc6|12211|baculoviral IAP repeat-containing 6
mm9_v1_chr9_-_88376937_88377419	1.05606	AGGUAGU	BC080309|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC108363|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK083398|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK077588|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC050079|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC055863|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK076026|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AB035725|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK034845|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC041148|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC058807|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019666|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019796|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein
mm9_v1_chr14_+_22569752_22569797	1.0493	AGGUAGU	AK006211|Samd8|67630|sterile alpha motif domain containing 8	NM_026283|Samd8|67630|sterile alpha motif domain containing 8	BC116745|Samd8|67630|sterile alpha motif domain containing 8	BC116747|Samd8|67630|sterile alpha motif domain containing 8	AK015593|Samd8|67630|sterile alpha motif domain containing 8	BC100476|Samd8|67630|sterile alpha motif domain containing 8
mm9_v1_chr2_-_6805937_6806041	1.02198	AGGUAGU	AK042749|Celf2|14007|CUGBP, Elav-like family member 2	AK164112|Celf2|14007|CUGBP, Elav-like family member 2	AK052102|Celf2|14007|CUGBP, Elav-like family member 2	AK135166|Celf2|14007|CUGBP, Elav-like family member 2	BC026856|Celf2|14007|CUGBP, Elav-like family member 2	AF090697|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110228|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160293|Celf2|14007|CUGBP, Elav-like family member 2	NM_010160|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr10_-_63552994_63553028	1.0169	AGGUAGU	AK036366|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK163753|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035773|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035858|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035882|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	NM_178678|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK032485|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK036180|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3
mm9_v1_chrX_-_101396356_101396482	0.994209	AGGUAGU	AK220439|C77370|245555|expressed sequence C77370	DQ975302|C77370|245555|expressed sequence C77370	DQ975303|C77370|245555|expressed sequence C77370	NM_001077354|C77370|245555|expressed sequence C77370	AK038635|C77370|245555|expressed sequence C77370
mm9_v1_chr13_-_8870231_8870293	0.98818	AGGUAGU	AK129254|Wdr37|207615|WD repeat domain 37	AK032582|Wdr37|207615|WD repeat domain 37	AK146209|Wdr37|207615|WD repeat domain 37	AK014128|Wdr37|207615|WD repeat domain 37	AK044740|Wdr37|207615|WD repeat domain 37	AK036203|Wdr37|207615|WD repeat domain 37	NM_001039389|Wdr37|207615|WD repeat domain 37	NM_172445|Wdr37|207615|WD repeat domain 37
mm9_v1_chr11_-_79344055_79344121	0.958895	AGGUAGU	AK046407|Evi2a|14017|ecotropic viral integration site 2a	BC038124|Evi2a|14017|ecotropic viral integration site 2a	AK170527|Evi2a|14017|ecotropic viral integration site 2a	AK005353|Evi2a|14017|ecotropic viral integration site 2a	NM_146023|Evi2b|216984|ecotropic viral integration site 2b	NM_001033711|Evi2a|14017|ecotropic viral integration site 2a	NM_010161|Evi2a|14017|ecotropic viral integration site 2a
mm9_v1_chr6_+_54545104_54545338	0.917839	AGGUAGU	AK078040|Plekha8|231999|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	NM_001164361|Plekha8|231999|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	AK170592|Plekha8|231999|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
mm9_v1_chr9_+_110034489_110034583	0.915781	AGGUAGU	NM_009211|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK143485|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK144122|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK133922|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	U85614|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK144631|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK145352|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK042194|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	BC056375|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	BC052423|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	BC053064|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	BC022173|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
mm9_v1_chr12_-_28027541_28027588	0.905444	AGGUAGU	AK146514|Sox11|20666|SRY-box containing gene 11	AF009414|Sox11|20666|SRY-box containing gene 11	BC078643|Sox11|20666|SRY-box containing gene 11	AK165693|Sox11|20666|SRY-box containing gene 11	AK165005|Sox11|20666|SRY-box containing gene 11	NM_009234|Sox11|20666|SRY-box containing gene 11
mm9_v1_chr6_+_54553140_54553140	0.867293	AGGUAGU	BC052360|Plekha8|231999|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	NM_001001335|Plekha8|231999|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
mm9_v1_chr11_+_96227071_96227074	0.853495	AGGUAGU	AK017686|Hoxb1|15407|homeobox B1	NM_008266|Hoxb1|15407|homeobox B1	BC103597|Hoxb1|15407|homeobox B1	BC103598|Hoxb1|15407|homeobox B1	BC103605|Hoxb1|15407|homeobox B1	BC103606|Hoxb1|15407|homeobox B1
mm9_v1_chr11_-_57645498_57645648	0.821316	AGGUAGU	BC050182|Hand1|15110|heart and neural crest derivatives expressed transcript 1	U43714|Hand1|15110|heart and neural crest derivatives expressed transcript 1	S79216|Hand1|15110|heart and neural crest derivatives expressed transcript 1	NM_008213|Hand1|15110|heart and neural crest derivatives expressed transcript 1	U21226|Hand1|15110|heart and neural crest derivatives expressed transcript 1
mm9_v1_chr11_+_96160484_96160526	0.813268	AGGUAGU	BC016893|Hoxb6|15414|homeobox B6	NM_008269|Hoxb6|15414|homeobox B6
mm9_v1_chr9_-_50425561_50425568	0.797176	AGGUAGU	NM_001134902|AU019823|270156|expressed sequence AU019823	NM_212449|AU019823|270156|expressed sequence AU019823
mm9_v1_chr16_-_95751971_95751971	0.764612	AGGUAGU	AB073078|Erg|13876|avian erythroblastosis virus E-26 (v-ets) oncogene related	AB073079|Erg|13876|avian erythroblastosis virus E-26 (v-ets) oncogene related	AB073080|Erg|13876|avian erythroblastosis virus E-26 (v-ets) oncogene related	NM_133659|Erg|13876|avian erythroblastosis virus E-26 (v-ets) oncogene related
mm9_v1_chr1_+_138521477_138521641	0.764339	AGGUAGU	NM_001160251|Zfp281|226442|zinc finger protein 281	NM_177643|Zfp281|226442|zinc finger protein 281	BC003243|Zfp281|226442|zinc finger protein 281	BC062153|Zfp281|226442|zinc finger protein 281	AK157189|Zfp281|226442|zinc finger protein 281	AK142218|Zfp281|226442|zinc finger protein 281
mm9_v1_chr19_+_30104914_30105033	0.760526	AGGUAGU	AK082518|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK031036|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK042321|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK051743|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK080925|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK041564|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	BC060241|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	NM_144873|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2
mm9_v1_chr15_+_99800504_99800504	0.750293	AGGUAGU	AK139636|Larp4|207214|La ribonucleoprotein domain family, member 4	NM_001080948|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr2_+_167906462_167906503	0.724359	AGGUAGU	NM_021409|Pard6b|58220|par-6 (partitioning defective 6) homolog beta (C. elegans)
mm9_v1_chr10_+_127176590_127176697	0.719522	AGGUAGU	BC058661|Zbtb39|320080|zinc finger and BTB domain containing 39	NM_198035|Zbtb39|320080|zinc finger and BTB domain containing 39	AK135409|Zbtb39|320080|zinc finger and BTB domain containing 39	AK155700|Zbtb39|320080|zinc finger and BTB domain containing 39	BC079569|Zbtb39|320080|zinc finger and BTB domain containing 39
mm9_v1_chr1_+_123327625_123327651	0.702584	AGGUAGU	AK142302|Ccdc93|70829|coiled-coil domain containing 93	NM_001025156|Ccdc93|70829|coiled-coil domain containing 93	NM_029955|Ccdc93|70829|coiled-coil domain containing 93	AK082581|Ccdc93|70829|coiled-coil domain containing 93
mm9_v1_chr15_+_10106992_10106998	0.70248	AGGUAGU	AK054551|Prlr|19116|prolactin receptor	NM_011169|Prlr|19116|prolactin receptor	AK042147|Prlr|19116|prolactin receptor
mm9_v1_chr7_-_148623725_148623772	0.701366	AGGUAGU	BC050887|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	NM_026646|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm9_v1_chr2_+_49307005_49307084	0.693064	AGGUAGU	NM_172663|Epc2|227867|enhancer of polycomb homolog 2 (Drosophila)	AK031025|Epc2|227867|enhancer of polycomb homolog 2 (Drosophila)
mm9_v1_chr19_-_50752974_50753135	0.68207	AGGUAGU	AF137367|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	AF195056|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	AF284755|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	NM_021377|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	AK030440|Sorcs1|58178|VPS10 domain receptor protein SORCS 1
mm9_v1_chr1_-_9690289_9690338	0.679914	AGGUAGU	L35261|Mybl1|17864|myeloblastosis oncogene-like 1	NM_008651|Mybl1|17864|myeloblastosis oncogene-like 1
mm9_v1_chr2_+_31101302_31101442	0.678218	AGGUAGU	BC059825|Ncs1|14299|neuronal calcium sensor 1	NM_019681|Ncs1|14299|neuronal calcium sensor 1
mm9_v1_chr10_+_87321789_87322010	0.658586	AGGUAGU	NM_001111275|Igf1|16000|insulin-like growth factor 1	NM_010512|Igf1|16000|insulin-like growth factor 1	AK050118|Igf1|16000|insulin-like growth factor 1	AK081019|Igf1|16000|insulin-like growth factor 1	AK165471|Igf1|16000|insulin-like growth factor 1	AY878192|Igf1|16000|insulin-like growth factor 1	AY878193|Igf1|16000|insulin-like growth factor 1	AK052033|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr7_+_104480819_104480860	0.657448	AGGUAGU	NM_001039039|Kctd21|622320|potassium channel tetramerisation domain containing 21	AK141547|Kctd21|622320|potassium channel tetramerisation domain containing 21
mm9_v1_chr13_-_38085986_38086062	0.645158	AGGUAGU	BC011255|Ssr1|107513|signal sequence receptor, alpha	AK010884|Ssr1|107513|signal sequence receptor, alpha	AK167793|Ssr1|107513|signal sequence receptor, alpha	AK160285|Ssr1|107513|signal sequence receptor, alpha	AF326229|Ssr1|107513|signal sequence receptor, alpha	AF395811|Ssr1|107513|signal sequence receptor, alpha	AY993942|Ssr1|107513|signal sequence receptor, alpha	AK166235|Ssr1|107513|signal sequence receptor, alpha	AK031538|Ssr1|107513|signal sequence receptor, alpha	AB009295|Ssr1|107513|signal sequence receptor, alpha	NM_025965|Ssr1|107513|signal sequence receptor, alpha
mm9_v1_chr5_-_46248719_46248778	0.644109	AGGUAGU	BC066151|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK041987|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK043498|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK154398|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK155421|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK083689|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK043845|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	BC138563|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_001163073|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_178142|Lcorl|209707|ligand dependent nuclear receptor corepressor-like
mm9_v1_chrX_+_90900201_90900217	0.637596	AGGUAGU	AK149304|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189950|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	NM_177546|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK053577|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chr15_+_89041957_89042070	0.636306	AGGUAGU	AK084684|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	NM_026813|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	NM_027805|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	AK083335|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	BC024879|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	AK018403|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2
mm9_v1_chr2_-_7317824_7317824	0.626404	AGGUAGU	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr3_-_133207209_133207353	0.614221	AGGUAGU	AK155776|Tet2|214133|tet oncogene family member 2	DQ079067|Tet2|214133|tet oncogene family member 2	NM_001040400|Tet2|214133|tet oncogene family member 2
mm9_v1_chr6_+_15135505_15135508	0.597002	AGGUAGU	BC062926|Foxp2|114142|forkhead box P2	NM_212435|Foxp2|114142|forkhead box P2	BC058960|Foxp2|114142|forkhead box P2
mm9_v1_chr2_+_151907264_151907264	0.59339	AGGUAGU	NM_001160410|Scrt2|545474|scratch homolog 2, zinc finger protein (Drosophila)
mm9_v1_chr9_-_103267226_103267309	0.583687	AGGUAGU	AK172053|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC031362|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	NM_001134427|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	AK048941|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3
mm9_v1_chr15_-_76352331_76352558	0.577198	AGGUAGU	BC057562|Scrt1|170729|scratch homolog 1, zinc finger protein (Drosophila)	BC089316|Scrt1|170729|scratch homolog 1, zinc finger protein (Drosophila)	NM_130893|Scrt1|170729|scratch homolog 1, zinc finger protein (Drosophila)
mm9_v1_chr14_-_125076242_125076348	0.573326	AGGUAGU	BC107003|Fgf14|14169|fibroblast growth factor 14	BC107004|Fgf14|14169|fibroblast growth factor 14	AK079100|Fgf14|14169|fibroblast growth factor 14	NM_207667|Fgf14|14169|fibroblast growth factor 14
mm9_v1_chr10_+_127114119_127114144	0.570879	AGGUAGU	BC030440|Tmem194|210035|transmembrane protein 194	NM_001113211|Tmem194|210035|transmembrane protein 194	NM_173732|Tmem194|210035|transmembrane protein 194	AK129110|Tmem194|210035|transmembrane protein 194	AK090031|Tmem194|210035|transmembrane protein 194
mm9_v1_chr12_-_92828018_92828088	0.539823	AGGUAGU	AF250834|Gtf2a1|83602|general transcription factor II A, 1	BC079909|Gtf2a1|83602|general transcription factor II A, 1	AK139996|Gtf2a1|83602|general transcription factor II A, 1	NM_031391|Gtf2a1|83602|general transcription factor II A, 1
mm9_v1_chr16_+_20733199_20733225	0.534821	AGGUAGU	AF069501|Chrd|12667|chordin	NM_009893|Chrd|12667|chordin	BC145017|Chrd|12667|chordin	BC145018|Chrd|12667|chordin	BC145019|Chrd|12667|chordin	BC145696|Chrd|12667|chordin	AK077460|Chrd|12667|chordin	AK165339|Chrd|12667|chordin	AF096276|Chrd|12667|chordin	AK149445|Chrd|12667|chordin
mm9_v1_chrX_+_102959815_102959879	0.523245	AGGUAGU	BC132641|Fgf16|80903|fibroblast growth factor 16	BC137993|Fgf16|80903|fibroblast growth factor 16	NM_030614|Fgf16|80903|fibroblast growth factor 16	AB049219|Fgf16|80903|fibroblast growth factor 16	AF292104|Fgf16|80903|fibroblast growth factor 16
mm9_v1_chr17_-_91492065_91492142	0.508373	AGGUAGU	BC079893|Nrxn1|18189|neurexin I	AK005349|Nrxn1|18189|neurexin I	AK139280|Nrxn1|18189|neurexin I	AK163484|Nrxn1|18189|neurexin I	AK037724|Nrxn1|18189|neurexin I	AB093249|Nrxn1|18189|neurexin I	NM_020252|Nrxn1|18189|neurexin I	NM_177284|Nrxn1|18189|neurexin I	AK137407|Nrxn1|18189|neurexin I
mm9_v1_chr16_+_77013880_77014313	0.504821	AGGUAGU	AK011798|Usp25|30940|ubiquitin specific peptidase 25	AK036456|Usp25|30940|ubiquitin specific peptidase 25	AF170563|Usp25|30940|ubiquitin specific peptidase 25	BC048171|Usp25|30940|ubiquitin specific peptidase 25	BC063059|Usp25|30940|ubiquitin specific peptidase 25	NM_013918|Usp25|30940|ubiquitin specific peptidase 25
mm9_v1_chr2_+_164658367_164658483	0.502195	AGGUAGU	NM_001038492|Ctsa|19025|cathepsin A	NM_008906|Ctsa|19025|cathepsin A	AK019861|Ctsa|19025|cathepsin A	J05261|Ctsa|19025|cathepsin A
mm9_v1_chr8_-_113551636_113551700	0.491803	AGGUAGU	AK147499|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	AK013362|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	NM_001190800|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	NM_172284|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
mm9_v1_chr1_+_88199795_88199833	0.480601	AGGUAGU	NM_145222|B3gnt7|227327|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	AK080081|B3gnt7|227327|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	AF502429|B3gnt7|227327|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
mm9_v1_chr8_+_24780132_24780145	0.471709	AGGUAGU	AK140391|Zmat4|320158|zinc finger, matrin type 4	AK140413|Zmat4|320158|zinc finger, matrin type 4	NM_177086|Zmat4|320158|zinc finger, matrin type 4	AK036254|Zmat4|320158|zinc finger, matrin type 4	AK134793|Zmat4|320158|zinc finger, matrin type 4	BC065110|Zmat4|320158|zinc finger, matrin type 4	BC079657|Zmat4|320158|zinc finger, matrin type 4
mm9_v1_chr7_+_98239230_98239295	0.465293	AGGUAGU	NM_011807|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr2_-_34227309_34227557	0.464825	AGGUAGU	AK052017|Pbx3|18516|pre B-cell leukemia transcription factor 3	BC057879|Pbx3|18516|pre B-cell leukemia transcription factor 3	AK144363|Pbx3|18516|pre B-cell leukemia transcription factor 3	AF020199|Pbx3|18516|pre B-cell leukemia transcription factor 3	NM_016768|Pbx3|18516|pre B-cell leukemia transcription factor 3	AF020200|Pbx3|18516|pre B-cell leukemia transcription factor 3
mm9_v1_chr8_-_113555584_113555650	0.463357	AGGUAGU	AK033235|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	NM_001190786|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
mm9_v1_chr9_+_51855254_51855279	0.411188	AGGUAGU	NM_001104616|Rdx|19684|radixin	AK162204|Rdx|19684|radixin
mm9_v1_chr18_+_83080270_83080270	0.411152	AGGUAGU	NM_183033|Zfp516|329003|zinc finger protein 516
mm9_v1_chr8_-_113521722_113521757	0.394222	AGGUAGU	NM_007916|Ddx19a|13680|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a
mm9_v1_chr2_-_7002344_7002370	0.385977	AGGUAGU	NM_001110229|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110230|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160292|Celf2|14007|CUGBP, Elav-like family member 2	AK159996|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr7_+_51697856_51697856	0.381158	AGGUAGU	BC060263|Lrrc4b|272381|leucine rich repeat containing 4B	NM_198250|Lrrc4b|272381|leucine rich repeat containing 4B
mm9_v1_chr4_+_55362895_55362941	0.375562	AGGUAGU	NM_009011|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK084917|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK142280|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK150089|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK160880|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK163379|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK167582|Rad23b|19359|RAD23b homolog (S. cerevisiae)	BC027747|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK160890|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK160973|Rad23b|19359|RAD23b homolog (S. cerevisiae)
mm9_v1_chr14_-_71166340_71166465	0.371808	AGGUAGU	AJ297360|Xpo7|65246|exportin 7	AK041768|Xpo7|65246|exportin 7	AK051105|Xpo7|65246|exportin 7	AK035775|Xpo7|65246|exportin 7	BC029702|Xpo7|65246|exportin 7	AK164595|Xpo7|65246|exportin 7	NM_023045|Xpo7|65246|exportin 7
mm9_v1_chr7_+_29478162_29478199	0.364126	AGGUAGU	AK158463|Fbxo27|233040|F-box protein 27	NM_001163702|Fbxo27|233040|F-box protein 27	AK140275|Fbxo27|233040|F-box protein 27	BC075656|Fbxo27|233040|F-box protein 27
mm9_v1_chr2_+_122564227_122564360	0.361779	AGGUAGU	AK147116|Pldn|18457|pallidin	NM_019788|Pldn|18457|pallidin	BC016554|Pldn|18457|pallidin	AK172571|Pldn|18457|pallidin	AK077720|Pldn|18457|pallidin	AK038381|Pldn|18457|pallidin	BC085260|Pldn|18457|pallidin	AK160580|Pldn|18457|pallidin	AK170964|Pldn|18457|pallidin
mm9_v1_chr5_+_124889925_124890006	0.358629	AGGUAGU	NM_030241|Setd8|67956|SET domain containing (lysine methyltransferase) 8	AK030904|Setd8|67956|SET domain containing (lysine methyltransferase) 8	AK088097|Setd8|67956|SET domain containing (lysine methyltransferase) 8	BC108333|Setd8|67956|SET domain containing (lysine methyltransferase) 8
mm9_v1_chr7_+_16715637_16715696	0.34522	AGGUAGU	BC058704|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2	NM_148946|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2	BC080277|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2
mm9_v1_chr2_+_156022382_156022502	0.337451	AGGUAGU	NM_172674|Phf20|228829|PHD finger protein 20	AK045309|Phf20|228829|PHD finger protein 20	AK033017|Phf20|228829|PHD finger protein 20	AK038573|Phf20|228829|PHD finger protein 20	AK142424|Phf20|228829|PHD finger protein 20	BC060121|Phf20|228829|PHD finger protein 20
mm9_v1_chr12_+_54349663_54349663	0.318886	AGGUAGU	AF173871|Npas3|27386|neuronal PAS domain protein 3	BC120885|Npas3|27386|neuronal PAS domain protein 3	BC148199|Npas3|27386|neuronal PAS domain protein 3	NM_013780|Npas3|27386|neuronal PAS domain protein 3
mm9_v1_chr12_-_92828896_92828926	0.306417	AGGUAGU	BC117829|Gtf2a1|83602|general transcription factor II A, 1	BC117830|Gtf2a1|83602|general transcription factor II A, 1	AK048711|Gtf2a1|83602|general transcription factor II A, 1	NM_175335|Gtf2a1|83602|general transcription factor II A, 1
mm9_v1_chr4_+_28740280_28740313	0.286827	AGGUAGU	AK033903|Epha7|13841|Eph receptor A7	NM_001122889|Epha7|13841|Eph receptor A7	NM_010141|Epha7|13841|Eph receptor A7	X79082|Epha7|13841|Eph receptor A7	X79083|Epha7|13841|Eph receptor A7	X79084|Epha7|13841|Eph receptor A7
mm9_v1_chr13_+_25147872_25147872	0.27454	AGGUAGU	BC045136|Dcdc2a|195208|doublecortin domain containing 2a	NM_001195617|Dcdc2a|195208|doublecortin domain containing 2a	NM_177577|Dcdc2a|195208|doublecortin domain containing 2a
mm9_v1_chrX_+_90920450_90920749	0.270238	AGGUAGU	NM_211138|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	BC048917|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189949|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK032027|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chrX_-_101176600_101176631	0.263276	AGGUAGU	AK013207|Rlim|19820|ring finger protein, LIM domain interacting	AK029295|Rlim|19820|ring finger protein, LIM domain interacting	AK163276|Rlim|19820|ring finger protein, LIM domain interacting	NM_011276|Rlim|19820|ring finger protein, LIM domain interacting
mm9_v1_chr8_-_92872139_92872206	0.262217	AGGUAGU	AK082602|Tox3|244579|TOX high mobility group box family member 3	NM_172913|Tox3|244579|TOX high mobility group box family member 3
mm9_v1_chr7_+_114514258_114514338	0.240983	AGGUAGU	AK089115|Syt9|60510|synaptotagmin IX	NM_021889|Syt9|60510|synaptotagmin IX	AK156631|Syt9|60510|synaptotagmin IX	BC132495|Syt9|60510|synaptotagmin IX	BC137904|Syt9|60510|synaptotagmin IX	BC145024|Syt9|60510|synaptotagmin IX
mm9_v1_chr15_+_102820969_102821018	0.239328	AGGUAGU	NM_010466|Hoxc8|15426|homeobox C8	X07439|Hoxc8|15426|homeobox C8
mm9_v1_chr18_+_83084023_83084023	0.229782	AGGUAGU	NM_001177464|Zfp516|329003|zinc finger protein 516
mm9_v1_chr14_-_65881225_65881304	0.229757	AGGUAGU	BC066186|Fzd3|14365|frizzled homolog 3 (Drosophila)	BC103714|Fzd3|14365|frizzled homolog 3 (Drosophila)	AK134261|Fzd3|14365|frizzled homolog 3 (Drosophila)	AK160554|Fzd3|14365|frizzled homolog 3 (Drosophila)	BC050965|Fzd3|14365|frizzled homolog 3 (Drosophila)	NM_021458|Fzd3|14365|frizzled homolog 3 (Drosophila)
mm9_v1_chr15_+_6658368_6658402	0.226369	AGGUAGU	AK029196|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK036149|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK036492|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK082586|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK087858|Rictor|78757|RPTOR independent companion of MTOR, complex 2	NM_030168|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AY540053|Rictor|78757|RPTOR independent companion of MTOR, complex 2	BC120903|Rictor|78757|RPTOR independent companion of MTOR, complex 2	BC120904|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK019537|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK054119|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AY497009|Rictor|78757|RPTOR independent companion of MTOR, complex 2
mm9_v1_chr14_-_27783615_27783757	0.220522	AGGUAGU	AK030445|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK045438|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK088080|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AY113705|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK033566|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK146356|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK049307|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	NM_145221|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	BC063751|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm9_v1_chr14_-_124591742_124591767	0.217401	AGGUAGU	U66204|Fgf14|14169|fibroblast growth factor 14	NM_010201|Fgf14|14169|fibroblast growth factor 14
mm9_v1_chr14_+_31292750_31292775	0.207463	AGGUAGU	AJ344447|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)	NM_133761|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)
mm9_v1_chr2_+_156373311_156373449	0.199918	AGGUAGU	NM_001164818|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	NM_026661|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	AK169526|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	AK018741|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	AK166203|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	AK028890|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	BC019988|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	BC020112|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	AK187905|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	AK201919|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	AK210506|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene
mm9_v1_chr9_+_119803988_119804030	0.195394	AGGUAGU	BC050106|Wdr48|67561|WD repeat domain 48	AK031244|Wdr48|67561|WD repeat domain 48	BC062967|Wdr48|67561|WD repeat domain 48	AK018396|Wdr48|67561|WD repeat domain 48	AK030041|Wdr48|67561|WD repeat domain 48	AK035273|Wdr48|67561|WD repeat domain 48	AK035864|Wdr48|67561|WD repeat domain 48	AK043970|Wdr48|67561|WD repeat domain 48	AK128953|Wdr48|67561|WD repeat domain 48	NM_026236|Wdr48|67561|WD repeat domain 48	AK033631|Wdr48|67561|WD repeat domain 48	AK012599|Wdr48|67561|WD repeat domain 48	BC048155|Wdr48|67561|WD repeat domain 48
mm9_v1_chr3_+_9250566_9250566	0.190962	AGGUAGU	NM_177660|Zbtb10|229055|zinc finger and BTB domain containing 10
mm9_v1_chr19_-_7457485_7457515	0.189729	AGGUAGU	NM_001033139|AI846148|68229|expressed sequence AI846148	NM_001167831|AI846148|68229|expressed sequence AI846148
mm9_v1_chr9_+_103014374_103014418	0.182406	AGGUAGU	BC060618|Rab6b|270192|RAB6B, member RAS oncogene family	NM_173781|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr2_-_7317513_7317626	0.181244	AGGUAGU	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr12_-_88488851_88488917	0.181219	AGGUAGU	AK076813|Pomt2|217734|protein-O-mannosyltransferase 2	AY090481|Pomt2|217734|protein-O-mannosyltransferase 2	NM_153415|Pomt2|217734|protein-O-mannosyltransferase 2	AK085703|Pomt2|217734|protein-O-mannosyltransferase 2
mm9_v1_chr1_-_9289810_9289957	0.16544	AGGUAGU	NM_027671|Sntg1|71096|syntrophin, gamma 1	AK038698|Sntg1|71096|syntrophin, gamma 1
mm9_v1_chr5_+_30431701_30431755	0.155463	AGGUAGU	NM_001167879|Fam59b|242915|family with sequence similarity 59, member B
mm9_v1_chr6_+_92041408_92041534	0.154908	AGGUAGU	NM_011630|Nr2c2|22026|nuclear receptor subfamily 2, group C, member 2	AK157305|Nr2c2|22026|nuclear receptor subfamily 2, group C, member 2
mm9_v1_chr11_-_97213379_97213390	0.147028	AGGUAGU	AK038894|Gpr179|217143|G protein-coupled receptor 179	NM_001081220|Gpr179|217143|G protein-coupled receptor 179	AK030625|Gpr179|217143|G protein-coupled receptor 179
mm9_v1_chr5_-_72895711_72895778	0.117076	AGGUAGU	BC093485|Corin|53419|corin	NM_001122756|Corin|53419|corin
mm9_v1_chr8_+_28134259_28134401	0.113931	AGGUAGU	BC036333|Erlin2|244373|ER lipid raft associated 2	AK030557|Erlin2|244373|ER lipid raft associated 2	BC038374|Erlin2|244373|ER lipid raft associated 2	NM_153592|Erlin2|244373|ER lipid raft associated 2
mm9_v1_chr6_-_120443824_120443824	0.0509737	AGGUAGU	AF277399|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	BC137862|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	NM_033567|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)
mm9_v1_chr5_-_72895429_72895446	0.0480124	AGGUAGU	BC138339|Corin|53419|corin	BC138340|Corin|53419|corin	BC145243|Corin|53419|corin	AB013874|Corin|53419|corin	NM_016869|Corin|53419|corin
mm9_v1_chr7_+_29477867_29477867	0.0378231	AGGUAGU	AK053292|Fbxo27|233040|F-box protein 27	NM_207238|Fbxo27|233040|F-box protein 27
mm9_v1_chrX_-_45947549_45947628	0.0338509	AGGUAGU	AK141491|Zfp280c|208968|zinc finger protein 280C	NM_001166648|Zfp280c|208968|zinc finger protein 280C	AK044137|Zfp280c|208968|zinc finger protein 280C	AK129399|Zfp280c|208968|zinc finger protein 280C	NM_001166649|Zfp280c|208968|zinc finger protein 280C
mm9_v1_chr6_-_39675456_39675512	0.021061	AGGUAGU	AK140431|Braf|109880|Braf transforming gene	NM_139294|Braf|109880|Braf transforming gene
mm9_v1_chr3_+_145883924_145883983	0.0133554	AGGUAGU	NM_022983|Lpar3|65086|lysophosphatidic acid receptor 3	AK042255|Lpar3|65086|lysophosphatidic acid receptor 3	AK042084|Lpar3|65086|lysophosphatidic acid receptor 3	AF293845|Lpar3|65086|lysophosphatidic acid receptor 3	AK132289|Lpar3|65086|lysophosphatidic acid receptor 3
mm9_v1_chr4_+_21858472_21858503	0.013081	AGGUAGU	AK144924|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	NM_175234|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK081616|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK082464|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK018081|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene
mm9_v1_chr9_-_90165508_90165664	0.0111457	AGGUAGU	AK089175|Tbc1d2b|67016|TBC1 domain family, member 2B	AK129273|Tbc1d2b|67016|TBC1 domain family, member 2B	AK156788|Tbc1d2b|67016|TBC1 domain family, member 2B	NM_194334|Tbc1d2b|67016|TBC1 domain family, member 2B	AK148382|Tbc1d2b|67016|TBC1 domain family, member 2B
