mm9_v1_chrX_-_70510714_70510728	22.9415	AIRE.p2	L22977|Xlr3c|22446|X-linked lymphocyte-regulated 3C	NM_011727|Xlr3c|22446|X-linked lymphocyte-regulated 3C	U02600|Xlr3c|22446|X-linked lymphocyte-regulated 3C
mm9_v1_chrX_+_70437517_70437560	19.0083	AIRE.p2	NM_001081643|Xlr3b|574437|X-linked lymphocyte-regulated 3B	BC057003|Xlr3b|574437|X-linked lymphocyte-regulated 3B	AK146398|Xlr3b|574437|X-linked lymphocyte-regulated 3B	BC038862|Xlr3b|574437|X-linked lymphocyte-regulated 3B	BC064787|Xlr3b|574437|X-linked lymphocyte-regulated 3B
mm9_v1_chrX_-_70342343_70342433	15.0505	AIRE.p2	BC107255|Xlr3a|22445|X-linked lymphocyte-regulated 3A	BC107283|Xlr3a|22445|X-linked lymphocyte-regulated 3A	BC127145|Xlr3a|22445|X-linked lymphocyte-regulated 3A	BC127146|Xlr3a|22445|X-linked lymphocyte-regulated 3A	BC093495|Xlr3a|22445|X-linked lymphocyte-regulated 3A	BC003812|Xlr3a|22445|X-linked lymphocyte-regulated 3A	NM_001110784|Xlr3a|22445|X-linked lymphocyte-regulated 3A
mm9_v1_chr11_+_83251195_83251208	14.5775	AIRE.p2	AK006174|1700020L24Rik|66330|RIKEN cDNA 1700020L24 gene	NM_025492|1700020L24Rik|66330|RIKEN cDNA 1700020L24 gene	AK005809|1700020L24Rik|66330|RIKEN cDNA 1700020L24 gene	BC152320|1700020L24Rik|66330|RIKEN cDNA 1700020L24 gene
mm9_v1_chr6_+_48689045_48689097	13.0207	AIRE.p2	NM_008376|Gimap1|16205|GTPase, IMAP family member 1	NM_175860|Gimap1|16205|GTPase, IMAP family member 1	AK156732|Gimap1|16205|GTPase, IMAP family member 1	BC132601|Gimap1|16205|GTPase, IMAP family member 1	BC132603|Gimap1|16205|GTPase, IMAP family member 1	AK169133|Gimap1|16205|GTPase, IMAP family member 1
mm9_v1_chr6_+_48597232_48597434	12.478	AIRE.p2	AK134199|Gimap8|243374|GTPase, IMAP family member 8	NM_001077410|Gimap8|243374|GTPase, IMAP family member 8	AB178029|Gimap8|243374|GTPase, IMAP family member 8	AK155985|Gimap8|243374|GTPase, IMAP family member 8	NM_212486|Gimap8|243374|GTPase, IMAP family member 8	BC137943|Gimap8|243374|GTPase, IMAP family member 8	BC137944|Gimap8|243374|GTPase, IMAP family member 8	AJ617674|Gimap8|243374|GTPase, IMAP family member 8
mm9_v1_chrX_-_7544940_7545019	12.1328	AIRE.p2	NM_008089|Gata1|14460|GATA binding protein 1	X15763|Gata1|14460|GATA binding protein 1	BC052653|Gata1|14460|GATA binding protein 1	AK146915|Gata1|14460|GATA binding protein 1
mm9_v1_chr4_+_15211137_15211173	11.233	AIRE.p2	AK162736|Tmem64|100201|transmembrane protein 64
mm9_v1_chr11_+_83037063_83037095	10.5791	AIRE.p2	AK028715|AI662270|100043636|expressed sequence AI662270	AK168001|AI662270|100043636|expressed sequence AI662270
mm9_v1_chr14_+_51748742_51748810	10.4915	AIRE.p2	NM_030098|Rnase6|78416|ribonuclease, RNase A family, 6	AY545655|Rnase6|78416|ribonuclease, RNase A family, 6	BC094892|Rnase6|78416|ribonuclease, RNase A family, 6	AK020595|Rnase6|78416|ribonuclease, RNase A family, 6	BC132632|Rnase6|78416|ribonuclease, RNase A family, 6	BC132634|Rnase6|78416|ribonuclease, RNase A family, 6
mm9_v1_chr3_+_41419561_41419606	9.9335	AIRE.p2	AK040146|Phf17|269424|PHD finger protein 17
mm9_v1_chr10_-_61960613_61960625	9.75168	AIRE.p2	AK087960|Srgn|19073|serglycin
mm9_v1_chr13_+_24706474_24706497	9.3693	AIRE.p2	AK041665|Fam65b|193385|family with sequence similarity 65, member B	NM_178658|Fam65b|193385|family with sequence similarity 65, member B	AK036452|Fam65b|193385|family with sequence similarity 65, member B	AK040887|Fam65b|193385|family with sequence similarity 65, member B
mm9_v1_chr10_+_40290141_40290167	9.00335	AIRE.p2	DQ164804|Slc22a16|70840|solute carrier family 22 (organic cation transporter), member 16	BC138326|Slc22a16|70840|solute carrier family 22 (organic cation transporter), member 16	BC138327|Slc22a16|70840|solute carrier family 22 (organic cation transporter), member 16	BC100473|Slc22a16|70840|solute carrier family 22 (organic cation transporter), member 16	NM_027572|Slc22a16|70840|solute carrier family 22 (organic cation transporter), member 16
mm9_v1_chr16_+_20128178_20128320	8.79327	AIRE.p2	AK004187|Klhl24|75785|kelch-like 24 (Drosophila)
mm9_v1_chr14_-_122314994_122315068	7.67066	AIRE.p2	AK172401|Gpr18|110168|G protein-coupled receptor 18	BC034872|Gpr18|110168|G protein-coupled receptor 18	NM_182806|Gpr18|110168|G protein-coupled receptor 18	AK157029|Gpr18|110168|G protein-coupled receptor 18	AK156868|Gpr18|110168|G protein-coupled receptor 18	AK156039|Gpr18|110168|G protein-coupled receptor 18
mm9_v1_chr19_+_29441927_29441979	7.46019	AIRE.p2	NM_021893|Cd274|60533|CD274 antigen	BC066841|Cd274|60533|CD274 antigen	AK080003|Cd274|60533|CD274 antigen	AK154403|Cd274|60533|CD274 antigen	AK089307|Cd274|60533|CD274 antigen
mm9_v1_chr19_-_4190836_4191046	7.40699	AIRE.p2	AK154444|Tbc1d10c|108995|TBC1 domain family, member 10c	BC094901|Tbc1d10c|108995|TBC1 domain family, member 10c	AK088119|Tbc1d10c|108995|TBC1 domain family, member 10c	AK131177|Tbc1d10c|108995|TBC1 domain family, member 10c	AK075803|Tbc1d10c|108995|TBC1 domain family, member 10c	AK146426|Tbc1d10c|108995|TBC1 domain family, member 10c	AK153836|Tbc1d10c|108995|TBC1 domain family, member 10c	AK040487|Tbc1d10c|108995|TBC1 domain family, member 10c	NM_178650|Tbc1d10c|108995|TBC1 domain family, member 10c
mm9_v1_chr19_+_12873115_12873132	6.97365	AIRE.p2	BC026563|Lpxn|107321|leupaxin
mm9_v1_chr10_+_126504125_126504226	6.54604	AIRE.p2	
mm9_v1_chr7_-_108709378_108709380	6.48735	AIRE.p2	AK018555|Art2a-ps|11871|ADP-ribosyltransferase 2a, pseudogene
mm9_v1_chr4_+_150302107_150302108	6.40935	AIRE.p2	NM_001077509|Tnfrsf9|21942|tumor necrosis factor receptor superfamily, member 9	AK154625|Tnfrsf9|21942|tumor necrosis factor receptor superfamily, member 9
mm9_v1_chr1_+_19202046_19202134	6.31677	AIRE.p2	AK032045|Tcfap2b|21419|transcription factor AP-2 beta	NM_001025305|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr11_-_58615400_58615517	6.03128	AIRE.p2	FJ468008|Fam183b|75429|family with sequence similarity 183, member B	BC094630|Fam183b|75429|family with sequence similarity 183, member B	BC061254|Fam183b|75429|family with sequence similarity 183, member B	BC048748|Fam183b|75429|family with sequence similarity 183, member B	AK157972|Fam183b|75429|family with sequence similarity 183, member B	AK013920|Fam183b|75429|family with sequence similarity 183, member B	NM_001162878|Fam183b|75429|family with sequence similarity 183, member B	NM_029283|Fam183b|75429|family with sequence similarity 183, member B	BC126964|Fam183b|75429|family with sequence similarity 183, member B	BC117741|Fam183b|75429|family with sequence similarity 183, member B
mm9_v1_chr3_+_105707338_105707346	6.02958	AIRE.p2	AK154312|Adora3|11542|adenosine A3 receptor	NM_009631|Adora3|11542|adenosine A3 receptor	AK013534|Adora3|11542|adenosine A3 receptor
mm9_v1_chr13_-_60998747_60998807	5.99362	AIRE.p2	AY034578|Ctla2b|13025|cytotoxic T lymphocyte-associated protein 2 beta	X15592|Ctla2b|13025|cytotoxic T lymphocyte-associated protein 2 beta	AK150917|Ctla2b|13025|cytotoxic T lymphocyte-associated protein 2 beta	NM_001145801|Ctla2b|13025|cytotoxic T lymphocyte-associated protein 2 beta	NM_007797|Ctla2b|13025|cytotoxic T lymphocyte-associated protein 2 beta
mm9_v1_chr19_+_12873063_12873098	5.99025	AIRE.p2	AK039922|Lpxn|107321|leupaxin	AB071194|Lpxn|107321|leupaxin	NM_134152|Lpxn|107321|leupaxin
mm9_v1_chr14_-_25306261_25306271	5.96577	AIRE.p2	NM_001081247|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	AK170475|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A
mm9_v1_chr7_+_29052821_29052973	5.88086	AIRE.p2	BC094513|Eid2|386655|EP300 interacting inhibitor of differentiation 2	NM_198425|Eid2|386655|EP300 interacting inhibitor of differentiation 2	AY251273|Eid2|386655|EP300 interacting inhibitor of differentiation 2
mm9_v1_chr15_-_76701806_76701851	5.76323	AIRE.p2	AK153967|Zfp251|71591|zinc finger protein 251	AK047148|Zfp251|71591|zinc finger protein 251	AK140082|Zfp251|71591|zinc finger protein 251
mm9_v1_chr6_-_127075853_127076093	5.74829	AIRE.p2	AK193960|Ccnd2|12444|cyclin D2	AK011429|Ccnd2|12444|cyclin D2	AK009602|Ccnd2|12444|cyclin D2
mm9_v1_chr6_+_136467315_136467378	5.73597	AIRE.p2	AK082697|Atf7ip|54343|activating transcription factor 7 interacting protein	AK167542|Atf7ip|54343|activating transcription factor 7 interacting protein	BC048827|Atf7ip|54343|activating transcription factor 7 interacting protein	AK134252|Atf7ip|54343|activating transcription factor 7 interacting protein	BC052460|Atf7ip|54343|activating transcription factor 7 interacting protein	NM_019426|Atf7ip|54343|activating transcription factor 7 interacting protein	AJ132702|Atf7ip|54343|activating transcription factor 7 interacting protein	BC022714|Atf7ip|54343|activating transcription factor 7 interacting protein
mm9_v1_chr14_-_59797556_59797585	5.68959	AIRE.p2	BC099536|Gm5142|380907|predicted gene 5142	AK076969|Gm5142|380907|predicted gene 5142	NM_001004158|Gm5142|380907|predicted gene 5142
mm9_v1_chr8_-_26707934_26708016	5.6821	AIRE.p2	AK076546|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	BC055685|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	NM_173012|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	AK041725|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	AK031563|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	AK034050|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	AK050943|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	AK163507|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2
mm9_v1_chr10_-_80962881_80962881	5.66939	AIRE.p2	AJ006074|S1pr4|13611|sphingosine-1-phosphate receptor 4	NM_010102|S1pr4|13611|sphingosine-1-phosphate receptor 4
mm9_v1_chr15_-_76701864_76701885	5.65466	AIRE.p2	BC059071|Zfp251|71591|zinc finger protein 251	NM_001007568|Zfp251|71591|zinc finger protein 251
mm9_v1_chr8_+_90812964_90813045	5.63048	AIRE.p2	NM_001037723|Adcy7|11513|adenylate cyclase 7	AK154262|Adcy7|11513|adenylate cyclase 7	AK138911|Adcy7|11513|adenylate cyclase 7
mm9_v1_chr17_-_81464406_81464435	5.62152	AIRE.p2	AK012806|Thumpd2|72167|THUMP domain containing 2	NM_028138|Thumpd2|72167|THUMP domain containing 2
mm9_v1_chr5_-_123183537_123183571	5.58042	AIRE.p2	AK213252|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chr7_+_51268047_51268089	5.56901	AIRE.p2	K01831|Klk1b26|16618|kallikrein 1-related petidase b26	NM_010644|Klk1b26|16618|kallikrein 1-related petidase b26	NM_010115|Egfbp2|13647|epidermal growth factor binding protein type B	BC138704|Klk1b26|16618|kallikrein 1-related petidase b26	X58628|Egfbp2|13647|epidermal growth factor binding protein type B	X63327|Klk1b26|16618|kallikrein 1-related petidase b26	BC024688|Klk1b26|16618|kallikrein 1-related petidase b26	AB016032|Egfbp2|13647|epidermal growth factor binding protein type B
mm9_v1_chr18_+_74442753_74442835	5.44393	AIRE.p2	NM_028948|Ccdc11|74453|coiled-coil domain containing 11	AK016821|Ccdc11|74453|coiled-coil domain containing 11	AK162352|Ccdc11|74453|coiled-coil domain containing 11	BC099500|Ccdc11|74453|coiled-coil domain containing 11
mm9_v1_chr19_+_4154645_4154678	5.43734	AIRE.p2	NM_016933|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	AK088334|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	AK165203|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	BC013273|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	BC100560|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	D10105|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein
mm9_v1_chr10_-_129717244_129717295	5.41695	AIRE.p2	BC042639|Neurod4|11923|neurogenic differentiation 4	AK012183|Neurod4|11923|neurogenic differentiation 4	BC054391|Neurod4|11923|neurogenic differentiation 4	NM_007501|Neurod4|11923|neurogenic differentiation 4
mm9_v1_chr1_+_46123582_46123582	5.29141	AIRE.p2	NM_001160386|Dnahc7b|227058|dynein, axonemal, heavy chain 7B
mm9_v1_chr14_-_25306175_25306259	5.25963	AIRE.p2	BC151168|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC151002|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC151169|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	AK143315|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC053071|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A
mm9_v1_chr5_+_114580397_114580568	5.23378	AIRE.p2	BC011039|Ung|22256|uracil DNA glycosylase	NM_001040691|Ung|22256|uracil DNA glycosylase	Y08975|Ung|22256|uracil DNA glycosylase	AK146178|Ung|22256|uracil DNA glycosylase
mm9_v1_chr16_+_33500899_33501016	5.21264	AIRE.p2	AK037342|Zfp148|22661|zinc finger protein 148
mm9_v1_chr17_+_23949101_23949124	5.08665	AIRE.p2	AK081577|Srrm2|75956|serine/arginine repetitive matrix 2
mm9_v1_chr6_-_122289630_122289670	5.07842	AIRE.p2	S73882|Phc1|13619|polyhomeotic-like 1 (Drosophila)	S73883|Phc1|13619|polyhomeotic-like 1 (Drosophila)	S73884|Phc1|13619|polyhomeotic-like 1 (Drosophila)	BC046535|Phc1|13619|polyhomeotic-like 1 (Drosophila)	AK167590|Phc1|13619|polyhomeotic-like 1 (Drosophila)
mm9_v1_chr1_-_152011986_152012077	5.00488	AIRE.p2	
mm9_v1_chr7_+_52877180_52877296	4.97188	AIRE.p2	AB195681|Izumo1|73456|izumo sperm-egg fusion 1	AK006830|Izumo1|73456|izumo sperm-egg fusion 1	NM_001018013|Izumo1|73456|izumo sperm-egg fusion 1	BC139270|Izumo1|73456|izumo sperm-egg fusion 1
mm9_v1_chr14_-_122364309_122364416	4.96801	AIRE.p2	BC052868|Gpr183|321019|G protein-coupled receptor 183	AK141593|Gpr183|321019|G protein-coupled receptor 183	AK153216|Gpr183|321019|G protein-coupled receptor 183	AK087951|Gpr183|321019|G protein-coupled receptor 183	AK156005|Gpr183|321019|G protein-coupled receptor 183	AK156289|Gpr183|321019|G protein-coupled receptor 183	NM_183031|Gpr183|321019|G protein-coupled receptor 183	AK138693|Gpr183|321019|G protein-coupled receptor 183
mm9_v1_chr7_+_13466525_13466568	4.95561	AIRE.p2	AK132244|Zfp128|243833|zinc finger protein 128	AK035906|Zfp128|243833|zinc finger protein 128	NM_153802|Zfp128|243833|zinc finger protein 128	AK032046|Zfp128|243833|zinc finger protein 128	BC088998|Zfp128|243833|zinc finger protein 128	BC094248|Zfp128|243833|zinc finger protein 128	AF480861|Zfp128|243833|zinc finger protein 128
mm9_v1_chr12_+_16817772_16817797	4.85972	AIRE.p2	AK035116|E2f6|50496|E2F transcription factor 6	AK146792|E2f6|50496|E2F transcription factor 6	BC057929|E2f6|50496|E2F transcription factor 6	BC019166|E2f6|50496|E2F transcription factor 6
mm9_v1_chr5_+_106039499_106039528	4.8224	AIRE.p2	AK081556|Lrrc8c|100604|leucine rich repeat containing 8 family, member C
mm9_v1_chr6_-_135068260_135068300	4.82116	AIRE.p2	BC119192|Gprc5d|93746|G protein-coupled receptor, family C, group 5, member D	BC119194|Gprc5d|93746|G protein-coupled receptor, family C, group 5, member D	AK137739|Gprc5d|93746|G protein-coupled receptor, family C, group 5, member D	AF218809|Gprc5d|93746|G protein-coupled receptor, family C, group 5, member D	NM_053118|Gprc5d|93746|G protein-coupled receptor, family C, group 5, member D
mm9_v1_chr8_+_107951514_107951547	4.81508	AIRE.p2	AK133042|Lrrc36|270091|leucine rich repeat containing 36	NM_001033371|Lrrc36|270091|leucine rich repeat containing 36	NM_001170789|Lrrc36|270091|leucine rich repeat containing 36	BC150957|Lrrc36|270091|leucine rich repeat containing 36	BC172120|Lrrc36|270091|leucine rich repeat containing 36
mm9_v1_chr9_-_106378454_106378490	4.76397	AIRE.p2	BC058754|Parp3|235587|poly (ADP-ribose) polymerase family, member 3
mm9_v1_chr1_+_169298077_169298107	4.75538	AIRE.p2	AK208220|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1
mm9_v1_chr17_+_34375847_34375923	4.70096	AIRE.p2	AK172191|H2-Ob|15002|histocompatibility 2, O region beta locus	AK155650|H2-Ob|15002|histocompatibility 2, O region beta locus	NM_010389|H2-Ob|15002|histocompatibility 2, O region beta locus	AK172273|H2-Ob|15002|histocompatibility 2, O region beta locus	AK172299|H2-Ob|15002|histocompatibility 2, O region beta locus	AK155144|H2-Ob|15002|histocompatibility 2, O region beta locus	BC127027|H2-Ob|15002|histocompatibility 2, O region beta locus	BC127028|H2-Ob|15002|histocompatibility 2, O region beta locus	BC100707|H2-Ob|15002|histocompatibility 2, O region beta locus	BC100710|H2-Ob|15002|histocompatibility 2, O region beta locus	BC100709|H2-Ob|15002|histocompatibility 2, O region beta locus
mm9_v1_chr6_+_91828040_91828112	4.69337	AIRE.p2	NM_172730|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	BC051147|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK170727|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK156259|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK081505|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK039818|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK155581|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK170492|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	BC038871|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK051852|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene
mm9_v1_chr11_-_107209443_107209486	4.63548	AIRE.p2	AK021206|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1
mm9_v1_chr6_+_134961629_134961652	4.59867	AIRE.p2	NM_026360|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	AK010310|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC132242|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC132244|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	AK076982|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC060168|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC095944|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
mm9_v1_chr1_+_21339757_21339831	4.59308	AIRE.p2	NM_183322|Khdc1a|368204|KH domain containing 1A	AK136166|Khdc1a|368204|KH domain containing 1A
mm9_v1_chr11_+_31900378_31900504	4.54734	AIRE.p2	AK088499|Nsg2|18197|neuron specific gene family member 2	NM_008741|Nsg2|18197|neuron specific gene family member 2	U17259|Nsg2|18197|neuron specific gene family member 2	AK049679|Nsg2|18197|neuron specific gene family member 2	AK075612|Nsg2|18197|neuron specific gene family member 2	AK160712|Nsg2|18197|neuron specific gene family member 2	BC018224|Nsg2|18197|neuron specific gene family member 2	AK041338|Nsg2|18197|neuron specific gene family member 2
mm9_v1_chr6_-_66629677_66629677	4.49328	AIRE.p2	NM_134167|Vmn1r35|171185|vomeronasal 1 receptor 35
mm9_v1_chrX_-_159402465_159402479	4.47461	AIRE.p2	BC010751|S100g|12309|S100 calcium binding protein G
mm9_v1_chr4_-_151665770_151665770	4.47041	AIRE.p2	AK090218|Hes3|15207|hairy and enhancer of split 3 (Drosophila)	NM_008237|Hes3|15207|hairy and enhancer of split 3 (Drosophila)
mm9_v1_chr7_+_65913571_65913874	4.44866	AIRE.p2	NM_009728|Atp10a|11982|ATPase, class V, type 10A	AK132174|Atp10a|11982|ATPase, class V, type 10A	AK172149|Atp10a|11982|ATPase, class V, type 10A	AF156549|Atp10a|11982|ATPase, class V, type 10A	BC138356|Atp10a|11982|ATPase, class V, type 10A	BC138357|Atp10a|11982|ATPase, class V, type 10A	AK172972|Atp10a|11982|ATPase, class V, type 10A	AF011337|Atp10a|11982|ATPase, class V, type 10A
mm9_v1_chr12_-_80084464_80084464	4.41724	AIRE.p2	BC057677|Tmem229b|268567|transmembrane protein 229B	NM_001170401|Tmem229b|268567|transmembrane protein 229B
mm9_v1_chr12_+_77471173_77471252	4.38548	AIRE.p2	AK035036|Zbtb1|268564|zinc finger and BTB domain containing 1	AK049397|Zbtb1|268564|zinc finger and BTB domain containing 1	AY611626|Zbtb1|268564|zinc finger and BTB domain containing 1	NM_178744|Zbtb1|268564|zinc finger and BTB domain containing 1
mm9_v1_chr1_+_40497472_40497552	4.3793	AIRE.p2	NM_001025602|Il1rl1|17082|interleukin 1 receptor-like 1	D13695|Il1rl1|17082|interleukin 1 receptor-like 1
mm9_v1_chr13_-_67710581_67710643	4.35759	AIRE.p2	AK170565|AA987161|380856|expressed sequence AA987161	BC047145|AA987161|380856|expressed sequence AA987161	AK137425|AA987161|380856|expressed sequence AA987161
mm9_v1_chr11_-_54601133_54601161	4.21665	AIRE.p2	BC034079|Cdc42se2|72729|CDC42 small effector 2	AK088090|Cdc42se2|72729|CDC42 small effector 2	AK090381|Cdc42se2|72729|CDC42 small effector 2	AK012983|Cdc42se2|72729|CDC42 small effector 2	AK039301|Cdc42se2|72729|CDC42 small effector 2	AK135775|Cdc42se2|72729|CDC42 small effector 2
mm9_v1_chr9_+_72122705_72122721	4.19219	AIRE.p2	NM_146224|Zfp280d|235469|zinc finger protein 280D	AK169622|Zfp280d|235469|zinc finger protein 280D	AK172652|Zfp280d|235469|zinc finger protein 280D	AK083266|Zfp280d|235469|zinc finger protein 280D
mm9_v1_chr4_+_62220880_62220880	4.13424	AIRE.p2	AJ250999|Rgs3|50780|regulator of G-protein signaling 3	NM_019492|Rgs3|50780|regulator of G-protein signaling 3
mm9_v1_chr10_-_62342761_62342761	4.11674	AIRE.p2	GU079948|Tet1|52463|tet oncogene 1	NM_027384|Tet1|52463|tet oncogene 1
mm9_v1_chr16_-_11137100_11137212	4.11065	AIRE.p2	AK218593|Zc3h7a|106205|zinc finger CCCH type containing 7 A
mm9_v1_chr8_-_74150754_74150876	4.06632	AIRE.p2	AK141620|Unc13a|382018|unc-13 homolog A (C. elegans)	AK048697|Unc13a|382018|unc-13 homolog A (C. elegans)	AK039579|Unc13a|382018|unc-13 homolog A (C. elegans)
mm9_v1_chr4_-_120781830_120781830	4.02554	AIRE.p2	AK006456|Tmco2|69469|transmembrane and coiled-coil domains 2	NM_001081312|Tmco2|69469|transmembrane and coiled-coil domains 2
mm9_v1_chr16_+_49913305_49913369	3.95991	AIRE.p2	AK050387|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm9_v1_chr15_-_102993714_102993747	3.95723	AIRE.p2	BC062960|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	NM_027885|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK090367|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK198888|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK204061|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase
mm9_v1_chr8_+_35178083_35178147	3.93922	AIRE.p2	EU721729|Mboat4|234155|membrane bound O-acyltransferase domain containing 4	NM_001126314|Mboat4|234155|membrane bound O-acyltransferase domain containing 4	BC147844|Mboat4|234155|membrane bound O-acyltransferase domain containing 4	BC147849|Mboat4|234155|membrane bound O-acyltransferase domain containing 4	EU518496|Mboat4|234155|membrane bound O-acyltransferase domain containing 4
mm9_v1_chr12_+_85758189_85758266	3.93046	AIRE.p2	AK016795|Rnf113a2|66381|ring finger protein 113A2	BC116426|Rnf113a2|66381|ring finger protein 113A2	BC058194|Rnf113a2|66381|ring finger protein 113A2
mm9_v1_chr12_+_114727721_114727775	3.92146	AIRE.p2	AK029742|Adam6b|238405|a disintegrin and metallopeptidase domain 6B	AK076580|Adam6b|238405|a disintegrin and metallopeptidase domain 6B	BC111877|Adam6b|238405|a disintegrin and metallopeptidase domain 6B	NM_001009545|Adam6b|238405|a disintegrin and metallopeptidase domain 6B
mm9_v1_chr16_+_34651296_34651296	3.91786	AIRE.p2	BC049544|Ropn1|76378|ropporin, rhophilin associated protein 1	NM_030744|Ropn1|76378|ropporin, rhophilin associated protein 1
mm9_v1_chr4_+_130469048_130469149	3.91612	AIRE.p2	BC158032|Laptm5|16792|lysosomal-associated protein transmembrane 5
mm9_v1_chr13_+_113450958_113450993	3.90195	AIRE.p2	AK020109|Slc38a9|268706|solute carrier family 38, member 9	BC052361|Slc38a9|268706|solute carrier family 38, member 9	NM_178746|Slc38a9|268706|solute carrier family 38, member 9	AK044735|Slc38a9|268706|solute carrier family 38, member 9	AK043402|Slc38a9|268706|solute carrier family 38, member 9	AK034958|Slc38a9|268706|solute carrier family 38, member 9	AK039821|Slc38a9|268706|solute carrier family 38, member 9
mm9_v1_chr7_-_85992096_85992145	3.89398	AIRE.p2	BC031930|Det1|76375|de-etiolated homolog 1 (Arabidopsis)	NM_029585|Det1|76375|de-etiolated homolog 1 (Arabidopsis)	AK011666|Det1|76375|de-etiolated homolog 1 (Arabidopsis)
mm9_v1_chr10_-_61970481_61970509	3.85687	AIRE.p2	BC037076|Srgn|19073|serglycin	J04549|Srgn|19073|serglycin	AK157945|Srgn|19073|serglycin	M34603|Srgn|19073|serglycin	NM_011157|Srgn|19073|serglycin	X16133|Srgn|19073|serglycin	AK168124|Srgn|19073|serglycin	AK151357|Srgn|19073|serglycin
mm9_v1_chr14_-_66211842_66211926	3.82311	AIRE.p2	NM_028811|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	AK012072|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	AK150058|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	BC057453|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	AK088457|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)
mm9_v1_chr17_+_25960571_25960660	3.82023	AIRE.p2	NM_173741|Wdr24|268933|WD repeat domain 24	AK078694|Wdr24|268933|WD repeat domain 24	AK170253|Wdr24|268933|WD repeat domain 24	BC037651|Wdr24|268933|WD repeat domain 24
mm9_v1_chr3_-_152003317_152003373	3.81215	AIRE.p2	BC138328|Fam73a|215708|family with sequence similarity 73, member A	BC138329|Fam73a|215708|family with sequence similarity 73, member A	AK166051|Fam73a|215708|family with sequence similarity 73, member A	BC059928|Fam73a|215708|family with sequence similarity 73, member A	AK044739|Fam73a|215708|family with sequence similarity 73, member A	BC098205|Fam73a|215708|family with sequence similarity 73, member A	AK045347|Fam73a|215708|family with sequence similarity 73, member A	AK143366|Fam73a|215708|family with sequence similarity 73, member A	AK085017|Fam73a|215708|family with sequence similarity 73, member A	NM_001162375|Fam73a|215708|family with sequence similarity 73, member A	NM_174868|Fam73a|215708|family with sequence similarity 73, member A
mm9_v1_chr11_-_94834751_94834776	3.8074	AIRE.p2	AF019564|Sgca|20391|sarcoglycan, alpha (dystrophin-associated glycoprotein)	BC060287|Sgca|20391|sarcoglycan, alpha (dystrophin-associated glycoprotein)	AK009015|Sgca|20391|sarcoglycan, alpha (dystrophin-associated glycoprotein)	AK075915|Sgca|20391|sarcoglycan, alpha (dystrophin-associated glycoprotein)	NM_001136080|Sgca|20391|sarcoglycan, alpha (dystrophin-associated glycoprotein)
mm9_v1_chr13_+_54167169_54167276	3.76058	AIRE.p2	AK012650|Sfxn1|14057|sideroflexin 1	NM_027324|Sfxn1|14057|sideroflexin 1	AF325260|Sfxn1|14057|sideroflexin 1	BC005743|Sfxn1|14057|sideroflexin 1	AK151110|Sfxn1|14057|sideroflexin 1
mm9_v1_chr1_-_88284715_88284736	3.72915	AIRE.p2	AF044602|Nmur1|14767|neuromedin U receptor 1	NM_010341|Nmur1|14767|neuromedin U receptor 1	BC120822|Nmur1|14767|neuromedin U receptor 1	BC137775|Nmur1|14767|neuromedin U receptor 1
mm9_v1_chr16_-_55934909_55934966	3.69522	AIRE.p2	BC065773|Cep97|74201|centrosomal protein 97	AK079884|Cep97|74201|centrosomal protein 97	AK154885|Cep97|74201|centrosomal protein 97	AK012971|Cep97|74201|centrosomal protein 97	AK080249|Cep97|74201|centrosomal protein 97	BC067049|Cep97|74201|centrosomal protein 97	NM_001159364|Cep97|74201|centrosomal protein 97	NM_001159365|Cep97|74201|centrosomal protein 97	NM_001159366|Cep97|74201|centrosomal protein 97	NM_028815|Cep97|74201|centrosomal protein 97	AK040079|Cep97|74201|centrosomal protein 97
mm9_v1_chr5_-_74023659_74023666	3.67471	AIRE.p2	BC031901|Lrrc66|231296|leucine rich repeat containing 66	NM_153568|Lrrc66|231296|leucine rich repeat containing 66	AK051875|Lrrc66|231296|leucine rich repeat containing 66
mm9_v1_chr13_+_49063750_49063790	3.66264	AIRE.p2	AK014080|C030044B11Rik|68128|RIKEN cDNA C030044B11 gene	AK021143|C030044B11Rik|68128|RIKEN cDNA C030044B11 gene
mm9_v1_chr1_-_73062445_73062472	3.63259	AIRE.p2	X12521|Tnp1|21958|transition protein 1	AK006495|Tnp1|21958|transition protein 1	BC061170|Tnp1|21958|transition protein 1	BC048494|Tnp1|21958|transition protein 1	NM_009407|Tnp1|21958|transition protein 1
mm9_v1_chr11_-_54601093_54601128	3.63015	AIRE.p2	BC048935|Cdc42se2|72729|CDC42 small effector 2	AK080473|Cdc42se2|72729|CDC42 small effector 2	AK146313|Cdc42se2|72729|CDC42 small effector 2
mm9_v1_chr8_+_108583449_108583790	3.61691	AIRE.p2	NM_010901|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK147708|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK155087|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK051602|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK134054|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK039929|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK220187|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	BC120900|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	BC120901|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	D85612|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887629|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887630|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887631|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3
mm9_v1_chr17_-_29052264_29052268	3.61665	AIRE.p2	BC117930|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene	AK033585|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene	NM_172450|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene
mm9_v1_chr3_+_30543428_30543428	3.58942	AIRE.p2	AK019775|Lrriq4|68307|leucine-rich repeats and IQ motif containing 4	NM_026668|Lrriq4|68307|leucine-rich repeats and IQ motif containing 4
mm9_v1_chr15_-_76500300_76500377	3.58521	AIRE.p2	AF079514|Foxh1|14106|forkhead box H1	AF110506|Foxh1|14106|forkhead box H1	AF177770|Foxh1|14106|forkhead box H1	AB221574|Foxh1|14106|forkhead box H1	AF069303|Foxh1|14106|forkhead box H1	NM_007989|Foxh1|14106|forkhead box H1	BC119156|Foxh1|14106|forkhead box H1	BC137781|Foxh1|14106|forkhead box H1
mm9_v1_chr2_+_59322709_59322728	3.56509	AIRE.p2	NM_029723|Dapl1|76747|death associated protein-like 1	AK009567|Dapl1|76747|death associated protein-like 1	BC116916|Dapl1|76747|death associated protein-like 1	BC116920|Dapl1|76747|death associated protein-like 1	BC063096|Dapl1|76747|death associated protein-like 1	BC052745|Dapl1|76747|death associated protein-like 1
mm9_v1_chr2_+_158450623_158450686	3.54397	AIRE.p2	AK046312|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	AK142980|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	NM_175419|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	AK046584|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	BC028806|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	BC052039|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	BC037522|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)
mm9_v1_chr5_+_136293975_136293975	3.52442	AIRE.p2	BC058385|Srrm3|58212|serine/arginine repetitive matrix 3	NM_021403|Srrm3|58212|serine/arginine repetitive matrix 3
mm9_v1_chr9_-_71011053_71011095	3.48658	AIRE.p2	BC024105|Aqp9|64008|aquaporin 9	AK050042|Aqp9|64008|aquaporin 9	NM_022026|Aqp9|64008|aquaporin 9
mm9_v1_chr9_+_98197001_98197080	3.47605	AIRE.p2	BC005737|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	NM_144533|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK040783|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK041526|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK041897|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3
mm9_v1_chr7_-_127813763_127813856	3.46964	AIRE.p2	AK006727|Pdzd9|67983|PDZ domain containing 9	AK015115|Pdzd9|67983|PDZ domain containing 9	AK015578|Pdzd9|67983|PDZ domain containing 9	AK017019|Pdzd9|67983|PDZ domain containing 9	NM_001040137|Pdzd9|67983|PDZ domain containing 9	BC147551|Pdzd9|67983|PDZ domain containing 9	BC147563|Pdzd9|67983|PDZ domain containing 9	BC172089|Pdzd9|67983|PDZ domain containing 9	AK005921|Pdzd9|67983|PDZ domain containing 9	NM_001040136|Pdzd9|67983|PDZ domain containing 9
mm9_v1_chr15_-_102993757_102993775	3.46247	AIRE.p2	AK045411|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK172510|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK004735|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase
mm9_v1_chr6_+_41488583_41488591	3.4591	AIRE.p2	
mm9_v1_chr9_+_114976396_114976396	3.45016	AIRE.p2	BC027256|Osbpl10|74486|oxysterol binding protein-like 10	NM_148958|Osbpl10|74486|oxysterol binding protein-like 10
mm9_v1_chr16_+_21794392_21794464	3.43266	AIRE.p2	AK004850|1300002E11Rik|100043489|RIKEN cDNA 1300002E11 gene	AK005305|1300002E11Rik|100043489|RIKEN cDNA 1300002E11 gene	AK031500|1300002E11Rik|100043489|RIKEN cDNA 1300002E11 gene
mm9_v1_chr2_+_104430617_104430708	3.40653	AIRE.p2	AK158169|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	NM_001037326|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	NM_145529|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	NM_177253|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	BC003241|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	BC058605|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	AK028899|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3
mm9_v1_chr19_+_11592938_11593140	3.40556	AIRE.p2	AF237909|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	NM_027209|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK172345|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	BC027425|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK075671|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK007613|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B
mm9_v1_chr9_+_72122785_72122816	3.3988	AIRE.p2	AK169721|Zfp280d|235469|zinc finger protein 280D	BC079878|Zfp280d|235469|zinc finger protein 280D	AK045173|Zfp280d|235469|zinc finger protein 280D	AK146597|Zfp280d|235469|zinc finger protein 280D
mm9_v1_chr5_-_138596915_138596971	3.39849	AIRE.p2	BC052453|Zfp113|56314|zinc finger protein 113	BC054525|Zfp113|56314|zinc finger protein 113	BC056991|Zfp113|56314|zinc finger protein 113	AF167320|Zfp113|56314|zinc finger protein 113	AK076349|Zfp113|56314|zinc finger protein 113	AK220556|Zfp113|56314|zinc finger protein 113	NM_019747|Zfp113|56314|zinc finger protein 113
mm9_v1_chr7_+_130267661_130267769	3.39349	AIRE.p2	AK147327|Tnrc6a|233833|trinucleotide repeat containing 6a	AK008599|Tnrc6a|233833|trinucleotide repeat containing 6a	BC026849|Tnrc6a|233833|trinucleotide repeat containing 6a	AK083848|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr4_-_147183894_147183948	3.38409	AIRE.p2	NM_001127189|Gm13157|100041677|predicted gene 13157	AK011687|2610036A22Rik|70190|RIKEN cDNA 2610036A22 gene
mm9_v1_chr11_-_53520771_53520798	3.38335	AIRE.p2	BC058180|Rad50|19360|RAD50 homolog (S. cerevisiae)	U66887|Rad50|19360|RAD50 homolog (S. cerevisiae)
mm9_v1_chr14_-_52780511_52780625	3.37565	AIRE.p2	AK082901|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)
mm9_v1_chr11_-_54601163_54601250	3.37198	AIRE.p2	AK145931|Cdc42se2|72729|CDC42 small effector 2	AK160934|Cdc42se2|72729|CDC42 small effector 2	NM_178626|Cdc42se2|72729|CDC42 small effector 2
mm9_v1_chrY_-_133778_133851	3.34514	AIRE.p2	X14382|Zfy1|22767|zinc finger protein 1, Y linked	AK076618|Zfy1|22767|zinc finger protein 1, Y linked	NM_009570|Zfy1|22767|zinc finger protein 1, Y linked
mm9_v1_chr1_-_196957694_196957780	3.33632	AIRE.p2	AK017702|Cr1l|12946|complement component (3b/4b) receptor 1-like	AK004825|Cr1l|12946|complement component (3b/4b) receptor 1-like	NM_013499|Cr1l|12946|complement component (3b/4b) receptor 1-like
mm9_v1_chr3_-_94240497_94240537	3.31608	AIRE.p2	AB045835|Oaz3|53814|ornithine decarboxylase antizyme 3	BC119339|Oaz3|53814|ornithine decarboxylase antizyme 3	BC119341|Oaz3|53814|ornithine decarboxylase antizyme 3	AK006116|Oaz3|53814|ornithine decarboxylase antizyme 3	AK006634|Oaz3|53814|ornithine decarboxylase antizyme 3	AK076942|Oaz3|53814|ornithine decarboxylase antizyme 3	AF175297|Oaz3|53814|ornithine decarboxylase antizyme 3	NM_016901|Oaz3|53814|ornithine decarboxylase antizyme 3
mm9_v1_chr6_+_90288207_90288212	3.29109	AIRE.p2	BC033269|Uroc1|243537|urocanase domain containing 1
mm9_v1_chr7_-_55237665_55237665	3.29104	AIRE.p2	AY042194|Mrgpra4|235854|MAS-related GPR, member A4	NM_153524|Mrgpra4|235854|MAS-related GPR, member A4
mm9_v1_chr6_+_54839147_54839273	3.28966	AIRE.p2	AK078666|Znrf2|387524|zinc and ring finger 2
mm9_v1_chr10_-_127188724_127188780	3.28347	AIRE.p2	BC125279|Gpr182|11536|G protein-coupled receptor 182	D17292|Gpr182|11536|G protein-coupled receptor 182
mm9_v1_chr17_+_36131397_36131470	3.2832	AIRE.p2	AK078380|A930015D03Rik|77810|RIKEN cDNA A930015D03 gene	AK020860|A930015D03Rik|77810|RIKEN cDNA A930015D03 gene	AK142942|A930015D03Rik|77810|RIKEN cDNA A930015D03 gene	BC055918|A930015D03Rik|77810|RIKEN cDNA A930015D03 gene
mm9_v1_chr2_-_91019477_91019477	3.27225	AIRE.p2	NM_001177720|Madd|228355|MAP-kinase activating death domain
mm9_v1_chr8_+_3515373_3515441	3.25396	AIRE.p2	AF173829|Pnpla6|50767|patatin-like phospholipase domain containing 6	NM_001122818|Pnpla6|50767|patatin-like phospholipase domain containing 6	NM_015801|Pnpla6|50767|patatin-like phospholipase domain containing 6	AK040720|Pnpla6|50767|patatin-like phospholipase domain containing 6	BC054789|Pnpla6|50767|patatin-like phospholipase domain containing 6	BC056999|Pnpla6|50767|patatin-like phospholipase domain containing 6
mm9_v1_chr7_+_134072351_134072419	3.2497	AIRE.p2	AK075722|Kctd13|233877|potassium channel tetramerisation domain containing 13	NM_172747|Kctd13|233877|potassium channel tetramerisation domain containing 13	BC079607|Kctd13|233877|potassium channel tetramerisation domain containing 13	AF534881|Kctd13|233877|potassium channel tetramerisation domain containing 13
mm9_v1_chr2_-_169968174_169968177	3.22796	AIRE.p2	AK139547|Zfp217|228913|zinc finger protein 217	NM_001159683|Zfp217|228913|zinc finger protein 217	AK163381|Zfp217|228913|zinc finger protein 217
mm9_v1_chr13_-_4278605_4278680	3.22208	AIRE.p2	AB027237|Akr1c12|622402|aldo-keto reductase family 1, member C12	BC012643|Akr1c12|622402|aldo-keto reductase family 1, member C12	BC063780|Akr1c12|622402|aldo-keto reductase family 1, member C12	AF177041|Akr1c12|622402|aldo-keto reductase family 1, member C12	AK007716|Akr1c12|622402|aldo-keto reductase family 1, member C12	NM_013777|Akr1c12|622402|aldo-keto reductase family 1, member C12
mm9_v1_chr3_-_102586596_102586636	3.21533	AIRE.p2	M35719|Tshb|22094|thyroid stimulating hormone, beta subunit	M35720|Tshb|22094|thyroid stimulating hormone, beta subunit	M35721|Tshb|22094|thyroid stimulating hormone, beta subunit	M35723|Tshb|22094|thyroid stimulating hormone, beta subunit	NM_001165939|Tshb|22094|thyroid stimulating hormone, beta subunit	NM_001165940|Tshb|22094|thyroid stimulating hormone, beta subunit	NM_009432|Tshb|22094|thyroid stimulating hormone, beta subunit
mm9_v1_chr5_-_21290971_21291070	3.20629	AIRE.p2	AK013295|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	D63784|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	NM_009584|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	BC021755|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK167991|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK131964|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK161376|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK162409|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK136951|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	BC052027|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK169850|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2
mm9_v1_chr9_-_106378494_106378548	3.18676	AIRE.p2	AK165070|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	BC014870|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK170541|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AY046317|Parp3|235587|poly (ADP-ribose) polymerase family, member 3
mm9_v1_chr14_-_56704033_56704109	3.17534	AIRE.p2	NM_008572|Mcpt8|17231|mast cell protease 8	X78545|Mcpt8|17231|mast cell protease 8	AK136485|Mcpt8|17231|mast cell protease 8	BC120607|Mcpt8|17231|mast cell protease 8	BC119342|Mcpt8|17231|mast cell protease 8	BC144934|Mcpt8|17231|mast cell protease 8
mm9_v1_chr7_-_30691111_30691122	3.16184	AIRE.p2	AK147732|Zfp27|22689|zinc finger protein 27	NM_001037707|Zfp27|22689|zinc finger protein 27	NM_011754|Zfp27|22689|zinc finger protein 27
mm9_v1_chr11_-_51807636_51807676	3.14396	AIRE.p2	AK017280|5430406J06Rik|73848|RIKEN cDNA 5430406J06 gene
mm9_v1_chr1_-_56694278_56694294	3.10815	AIRE.p2	AK016803|Hsfy2|71066|heat shock transcription factor, Y linked 2	BC049724|Hsfy2|71066|heat shock transcription factor, Y linked 2	NM_027661|Hsfy2|71066|heat shock transcription factor, Y linked 2
mm9_v1_chr6_-_129610573_129610706	3.08071	AIRE.p2	AF109785|Klrc2|16642|killer cell lectin-like receptor subfamily C, member 2	NM_010653|Klrc2|16642|killer cell lectin-like receptor subfamily C, member 2	AK036555|Klrc2|16642|killer cell lectin-like receptor subfamily C, member 2	AF106011|Klrc2|16642|killer cell lectin-like receptor subfamily C, member 2	NM_001098669|Klrc2|16642|killer cell lectin-like receptor subfamily C, member 2	AK040721|Klrc2|16642|killer cell lectin-like receptor subfamily C, member 2	AF106010|Klrc2|16642|killer cell lectin-like receptor subfamily C, member 2
mm9_v1_chr2_-_32942666_32942723	3.0759	AIRE.p2	BC132143|Garnl3|99326|GTPase activating RANGAP domain-like 3	AK034068|Garnl3|99326|GTPase activating RANGAP domain-like 3	NM_178888|Garnl3|99326|GTPase activating RANGAP domain-like 3
mm9_v1_chr13_+_120251565_120251614	3.06859	AIRE.p2	AK008565|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	NM_001113550|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	NM_026127|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK008588|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK149119|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK020163|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK146515|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK014735|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	BC021327|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK017802|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK160863|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK008746|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	BC028328|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK215837|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene
mm9_v1_chr1_-_53353810_53353878	3.0499	AIRE.p2	AK045010|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)	BC028939|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)	NM_153556|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)	AK140689|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)
mm9_v1_chr18_+_74433418_74433450	3.04112	AIRE.p2	AK166042|Mbd1|17190|methyl-CpG binding domain protein 1	AK193128|Mbd1|17190|methyl-CpG binding domain protein 1
mm9_v1_chr8_-_47209499_47209499	3.03968	AIRE.p2	NM_207213|Snx25|102141|sorting nexin 25
mm9_v1_chr6_+_146798631_146798631	3.00645	AIRE.p2	AK006257|1700023A16Rik|69371|RIKEN cDNA 1700023A16 gene	NM_027059|1700023A16Rik|69371|RIKEN cDNA 1700023A16 gene
mm9_v1_chr2_+_119722957_119723040	2.9804	AIRE.p2	AK046252|Mga|29808|MAX gene associated	NM_001164274|Mga|29808|MAX gene associated	NM_013720|Mga|29808|MAX gene associated	AK162302|Mga|29808|MAX gene associated	AK032570|Mga|29808|MAX gene associated	AK012050|Mga|29808|MAX gene associated	AK139919|Mga|29808|MAX gene associated	AK172962|Mga|29808|MAX gene associated
mm9_v1_chr7_+_17545027_17545143	2.9602	AIRE.p2	AK079661|Pnmal1|71691|PNMA-like 1	BC048228|Pnmal1|71691|PNMA-like 1	NM_001007569|Pnmal1|71691|PNMA-like 1
mm9_v1_chr2_+_103909961_103910022	2.95446	AIRE.p2	BC038128|Cd59b|333883|CD59b antigen	BC059731|Cd59b|333883|CD59b antigen
mm9_v1_chr5_+_135058559_135058657	2.9331	AIRE.p2	NM_020022|Rfc2|19718|replication factor C (activator 1) 2	BC099370|Rfc2|19718|replication factor C (activator 1) 2	AK154681|Rfc2|19718|replication factor C (activator 1) 2	BC023028|Rfc2|19718|replication factor C (activator 1) 2	AK011649|Rfc2|19718|replication factor C (activator 1) 2	AK011353|Rfc2|19718|replication factor C (activator 1) 2	AK075997|Rfc2|19718|replication factor C (activator 1) 2
mm9_v1_chr10_+_89207730_89207982	2.93286	AIRE.p2	AK141050|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	NM_029166|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AB093261|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC030383|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK033300|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC132134|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC138092|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK087280|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like
mm9_v1_chr15_-_72926936_72926959	2.91254	AIRE.p2	AK003962|1110029L17Rik|68722|RIKEN cDNA 1110029L17 gene
mm9_v1_chr17_-_5440223_5440262	2.91063	AIRE.p2	BC019420|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene	AK043276|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene	AK158107|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene	AK088025|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene	AK155326|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene	AK009851|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene	AK017626|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene	AK003559|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene	NM_027457|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene
mm9_v1_chr9_+_77765170_77765271	2.90228	AIRE.p2	AK031743|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK162451|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	NM_134255|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK051580|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK045274|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK085663|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK085696|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK028761|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK167755|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK168360|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK088153|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK168987|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	BC022911|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm9_v1_chrX_-_92673432_92673467	2.89287	AIRE.p2	BC107257|Asb12|70392|ankyrin repeat and SOCS box-containing 12	AF403040|Asb12|70392|ankyrin repeat and SOCS box-containing 12	AK009644|Asb12|70392|ankyrin repeat and SOCS box-containing 12	NM_080858|Asb12|70392|ankyrin repeat and SOCS box-containing 12
mm9_v1_chr16_-_89974943_89974943	2.86969	AIRE.p2	AK147392|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	NM_001145886|Tiam1|21844|T-cell lymphoma invasion and metastasis 1
mm9_v1_chrX_+_162608411_162608448	2.86879	AIRE.p2	AK045118|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK160583|Gemin8|237221|gem (nuclear organelle) associated protein 8	NM_146238|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK085045|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK037580|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK047511|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK053774|Gemin8|237221|gem (nuclear organelle) associated protein 8
mm9_v1_chr12_+_85758140_85758149	2.86865	AIRE.p2	AK009420|Rnf113a2|66381|ring finger protein 113A2	NM_025525|Rnf113a2|66381|ring finger protein 113A2
mm9_v1_chr12_-_88784769_88784966	2.8628	AIRE.p2	BC050856|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	BC094381|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	AK012518|Nrp|654309|neural regeneration protein	AK143105|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	AK042102|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	AK049549|Nrp|654309|neural regeneration protein	AK144828|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	NM_001102565|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	BC119399|Nrp|654309|neural regeneration protein	BC119401|Nrp|654309|neural regeneration protein	AY753183|Nrp|654309|neural regeneration protein	NM_001013372|Nrp|654309|neural regeneration protein
mm9_v1_chr6_-_114871769_114871855	2.84867	AIRE.p2	BC048841|Vgll4|232334|vestigial like 4 (Drosophila)	NM_177683|Vgll4|232334|vestigial like 4 (Drosophila)	BC060305|Vgll4|232334|vestigial like 4 (Drosophila)	AK144447|Vgll4|232334|vestigial like 4 (Drosophila)	AK078466|Vgll4|232334|vestigial like 4 (Drosophila)
mm9_v1_chr16_-_94509462_94509462	2.83862	AIRE.p2	BC050090|Hlcs|110948|holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	NM_139145|Hlcs|110948|holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)
mm9_v1_chr7_-_53435334_53435402	2.8368	AIRE.p2	BC141411|Abcc8|20927|ATP-binding cassette, sub-family C (CFTR/MRP), member 8	AK086472|Abcc8|20927|ATP-binding cassette, sub-family C (CFTR/MRP), member 8	NM_011510|Abcc8|20927|ATP-binding cassette, sub-family C (CFTR/MRP), member 8
mm9_v1_chr4_-_109203808_109203901	2.83416	AIRE.p2	AK005726|4930522H14Rik|67646|RIKEN cDNA 4930522H14 gene	AK015869|4930522H14Rik|67646|RIKEN cDNA 4930522H14 gene	BC125547|4930522H14Rik|67646|RIKEN cDNA 4930522H14 gene	BC125549|4930522H14Rik|67646|RIKEN cDNA 4930522H14 gene	AK019777|4930522H14Rik|67646|RIKEN cDNA 4930522H14 gene	NM_026291|4930522H14Rik|67646|RIKEN cDNA 4930522H14 gene
mm9_v1_chr19_-_10813341_10813463	2.81993	AIRE.p2	M15177|Cd5|12507|CD5 antigen	U65961|Cd5|12507|CD5 antigen	AK042105|Cd5|12507|CD5 antigen	AK089076|Cd5|12507|CD5 antigen	AK143736|Cd5|12507|CD5 antigen	BC011258|Cd5|12507|CD5 antigen	NM_007650|Cd5|12507|CD5 antigen
mm9_v1_chr5_+_137169015_137169047	2.81099	AIRE.p2	NM_021611|Myl10|59310|myosin, light chain 10, regulatory	X65981|Myl10|59310|myosin, light chain 10, regulatory	BC125528|Myl10|59310|myosin, light chain 10, regulatory
mm9_v1_chr6_-_35258102_35258131	2.79186	AIRE.p2	BC089161|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK036354|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	NM_172892|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK038937|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK139428|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4
mm9_v1_chr6_-_122692754_122692762	2.78843	AIRE.p2	AK140176|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	NM_011401|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3
mm9_v1_chr7_-_36103433_36103463	2.77103	AIRE.p2	BC100577|Gpatch1|67471|G patch domain containing 1	AK154571|Gpatch1|67471|G patch domain containing 1	AK014367|Gpatch1|67471|G patch domain containing 1	BC125584|Gpatch1|67471|G patch domain containing 1	BC132155|Gpatch1|67471|G patch domain containing 1	AK004868|Gpatch1|67471|G patch domain containing 1	NM_026181|Gpatch1|67471|G patch domain containing 1
mm9_v1_chr6_-_127076410_127076426	2.76702	AIRE.p2	AK011225|Ccnd2|12444|cyclin D2
mm9_v1_chr3_-_36589048_36589088	2.74567	AIRE.p2	AK082063|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	AK080619|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	AK032317|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	NM_019510|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3
mm9_v1_chr12_-_77470450_77470546	2.74045	AIRE.p2	NM_001172104|Zbtb25|109929|zinc finger and BTB domain containing 25	AK137486|Zbtb25|109929|zinc finger and BTB domain containing 25	NM_028356|Zbtb25|109929|zinc finger and BTB domain containing 25
mm9_v1_chr11_-_78020699_78020746	2.74034	AIRE.p2	
mm9_v1_chr17_-_65890082_65890121	2.72578	AIRE.p2	BC150885|Tmem232|381107|transmembrane protein 232	BC172032|Tmem232|381107|transmembrane protein 232	AF338469|Tmem232|381107|transmembrane protein 232	NM_001008973|Tmem232|381107|transmembrane protein 232
mm9_v1_chr5_+_130505154_130505232	2.72374	AIRE.p2	AF118271|Crcp|12909|calcitonin gene-related peptide-receptor component protein	NM_007761|Crcp|12909|calcitonin gene-related peptide-receptor component protein	AK075587|Crcp|12909|calcitonin gene-related peptide-receptor component protein	AF028242|Crcp|12909|calcitonin gene-related peptide-receptor component protein
mm9_v1_chr17_+_34734773_34734813	2.71901	AIRE.p2	AK004802|Ager|11596|advanced glycosylation end product-specific receptor	BC061182|Ager|11596|advanced glycosylation end product-specific receptor	NM_007425|Ager|11596|advanced glycosylation end product-specific receptor
mm9_v1_chr2_-_164653995_164654033	2.70952	AIRE.p2	BC116354|1700020C07Rik|75642|RIKEN cDNA 1700020C07 gene	BC116355|1700020C07Rik|75642|RIKEN cDNA 1700020C07 gene	AK006145|1700020C07Rik|75642|RIKEN cDNA 1700020C07 gene	NM_029370|1700020C07Rik|75642|RIKEN cDNA 1700020C07 gene
mm9_v1_chr5_-_124804538_124804560	2.68996	AIRE.p2	BC103772|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm9_v1_chr2_-_52532100_52532129	2.67467	AIRE.p2	AK147338|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	NM_001037099|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit
mm9_v1_chr17_+_56909672_56909698	2.67412	AIRE.p2	NM_001195673|Prr22|224908|proline rich 22
mm9_v1_chr2_-_35973217_35973333	2.6735	AIRE.p2	
mm9_v1_chr7_+_126705221_126705245	2.66881	AIRE.p2	AK057650|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2	NM_001177978|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2	NM_146197|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2	AK165353|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2	AK143757|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2	AK165401|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2	BC031140|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2
mm9_v1_chr11_-_100683830_100683883	2.64997	AIRE.p2	AY040231|Stat5b|20851|signal transducer and activator of transcription 5B	AY042906|Stat5b|20851|signal transducer and activator of transcription 5B	AY044901|Stat5b|20851|signal transducer and activator of transcription 5B	AY044902|Stat5b|20851|signal transducer and activator of transcription 5B	AY044903|Stat5b|20851|signal transducer and activator of transcription 5B	U21110|Stat5b|20851|signal transducer and activator of transcription 5B	AK088966|Stat5b|20851|signal transducer and activator of transcription 5B	AK154014|Stat5b|20851|signal transducer and activator of transcription 5B	NM_011489|Stat5b|20851|signal transducer and activator of transcription 5B
mm9_v1_chr7_-_19751441_19751475	2.64982	AIRE.p2	AK050472|Gipr|381853|gastric inhibitory polypeptide receptor	AK146552|Gipr|381853|gastric inhibitory polypeptide receptor	NM_001080815|Gipr|381853|gastric inhibitory polypeptide receptor
mm9_v1_chr9_-_78290953_78291043	2.64584	AIRE.p2	BC052196|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	NM_173386|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK078662|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK054330|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK145268|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK154165|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	BC145651|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	BC145653|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK030292|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene
mm9_v1_chr15_-_78893275_78893359	2.63151	AIRE.p2	BC014743|Ankrd54|223690|ankyrin repeat domain 54	NM_144849|Ankrd54|223690|ankyrin repeat domain 54	DQ884878|Ankrd54|223690|ankyrin repeat domain 54	AK133785|Ankrd54|223690|ankyrin repeat domain 54	AK050440|Ankrd54|223690|ankyrin repeat domain 54	AK143625|Ankrd54|223690|ankyrin repeat domain 54	AK084500|Ankrd54|223690|ankyrin repeat domain 54
mm9_v1_chr5_-_21290925_21290949	2.62858	AIRE.p2	U53208|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK161347|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2
mm9_v1_chr10_-_74495269_74495330	2.62004	AIRE.p2	BC147792|Rtdr1|71236|rhabdoid tumor deletion region gene 1	BC147801|Rtdr1|71236|rhabdoid tumor deletion region gene 1	NM_001163534|Rtdr1|71236|rhabdoid tumor deletion region gene 1	NM_001163535|Rtdr1|71236|rhabdoid tumor deletion region gene 1	AK017008|Rtdr1|71236|rhabdoid tumor deletion region gene 1	AK077078|Rtdr1|71236|rhabdoid tumor deletion region gene 1	NM_001163533|Rtdr1|71236|rhabdoid tumor deletion region gene 1	NM_027730|Rtdr1|71236|rhabdoid tumor deletion region gene 1
mm9_v1_chr9_-_105999021_105999113	2.6181	AIRE.p2	AM231151|Col6a4|68553|collagen, type VI, alpha 4	NM_026763|Col6a4|68553|collagen, type VI, alpha 4	AB370265|Col6a4|68553|collagen, type VI, alpha 4
mm9_v1_chr9_-_53475610_53475616	2.61183	AIRE.p2	AK031955|Cul5|75717|cullin 5	NM_001161618|Cul5|75717|cullin 5	NM_027807|Cul5|75717|cullin 5
mm9_v1_chr6_-_130183339_130183339	2.60737	AIRE.p2	NM_001110323|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	U10093|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	U10095|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7
mm9_v1_chr1_+_132762248_132762329	2.59399	AIRE.p2	BC116674|Faim3|69169|Fas apoptotic inhibitory molecule 3	BC118505|Faim3|69169|Fas apoptotic inhibitory molecule 3
mm9_v1_chr1_+_78507634_78507743	2.58451	AIRE.p2	NM_026713|Mogat1|68393|monoacylglycerol O-acyltransferase 1	BC031920|Mogat1|68393|monoacylglycerol O-acyltransferase 1
mm9_v1_chr2_-_165225861_165225904	2.57751	AIRE.p2	BC020160|4833422F24Rik|74614|RIKEN cDNA 4833422F24 gene	AK014751|4833422F24Rik|74614|RIKEN cDNA 4833422F24 gene	NM_029021|4833422F24Rik|74614|RIKEN cDNA 4833422F24 gene	AK042271|4833422F24Rik|74614|RIKEN cDNA 4833422F24 gene
mm9_v1_chr1_+_132762353_132762436	2.57658	AIRE.p2	AK007714|Faim3|69169|Fas apoptotic inhibitory molecule 3	AK155943|Faim3|69169|Fas apoptotic inhibitory molecule 3	NM_026976|Faim3|69169|Fas apoptotic inhibitory molecule 3	AK156523|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227385|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227386|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227387|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227388|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227389|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227390|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227391|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227392|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227393|Faim3|69169|Fas apoptotic inhibitory molecule 3
mm9_v1_chr4_+_154243693_154243744	2.57289	AIRE.p2	AF176569|Mmel1|27390|membrane metallo-endopeptidase-like 1	NM_013783|Mmel1|27390|membrane metallo-endopeptidase-like 1	AF157105|Mmel1|27390|membrane metallo-endopeptidase-like 1
mm9_v1_chr10_+_41607235_41607307	2.56109	AIRE.p2	NM_001013370|Sesn1|140742|sestrin 1	BC055753|Sesn1|140742|sestrin 1	AK160083|Sesn1|140742|sestrin 1	AK159531|Sesn1|140742|sestrin 1
mm9_v1_chr12_+_114782118_114782165	2.56065	AIRE.p2	AY158689|Adam6a|238406|a disintegrin and metallopeptidase domain 6A	NM_174885|Adam6a|238406|a disintegrin and metallopeptidase domain 6A	BC139059|Adam6a|238406|a disintegrin and metallopeptidase domain 6A	BC108387|Adam6a|238406|a disintegrin and metallopeptidase domain 6A
mm9_v1_chr10_+_60638341_60638497	2.55337	AIRE.p2	AJ249392|Tbata|65971|thymus, brain and testes associated	AK038284|Tbata|65971|thymus, brain and testes associated	AK088524|Tbata|65971|thymus, brain and testes associated	AY243459|Tbata|65971|thymus, brain and testes associated	AY243458|Tbata|65971|thymus, brain and testes associated
mm9_v1_chr6_-_129826635_129826689	2.55196	AIRE.p2	BC132236|Klra17|170733|killer cell lectin-like receptor, subfamily A, member 17	AB033769|Klra17|170733|killer cell lectin-like receptor, subfamily A, member 17	AK080021|Klra17|170733|killer cell lectin-like receptor, subfamily A, member 17	NM_133203|Klra17|170733|killer cell lectin-like receptor, subfamily A, member 17
mm9_v1_chr15_+_76210904_76210993	2.54091	AIRE.p2	AK036810|Heatr7a|223658|HEAT repeat containing 7A	NM_175457|Heatr7a|223658|HEAT repeat containing 7A	AK170702|Heatr7a|223658|HEAT repeat containing 7A	AK090131|Heatr7a|223658|HEAT repeat containing 7A	AK147808|Heatr7a|223658|HEAT repeat containing 7A	AK147897|Heatr7a|223658|HEAT repeat containing 7A	AK038863|Heatr7a|223658|HEAT repeat containing 7A	AK052153|Heatr7a|223658|HEAT repeat containing 7A
mm9_v1_chr18_-_65553541_65553541	2.53618	AIRE.p2	NM_001037294|Alpk2|225638|alpha-kinase 2
mm9_v1_chr1_-_132586370_132586494	2.53495	AIRE.p2	BC065379|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
mm9_v1_chr18_-_36926866_36926900	2.53439	AIRE.p2	
mm9_v1_chr5_-_124804583_124804698	2.51345	AIRE.p2	BC083075|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1	NM_013812|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1	AK004852|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm9_v1_chr18_+_14941735_14941757	2.51003	AIRE.p2	AK012135|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_001100449|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr2_+_173348092_173348148	2.50482	AIRE.p2	NM_028158|1700021F07Rik|72221|RIKEN cDNA 1700021F07 gene	BC050790|1700021F07Rik|72221|RIKEN cDNA 1700021F07 gene	AK006200|1700021F07Rik|72221|RIKEN cDNA 1700021F07 gene
mm9_v1_chr17_-_90436488_90436574	2.48686	AIRE.p2	AJ006802|Nrxn1|18189|neurexin I
mm9_v1_chr10_+_116018336_116018351	2.48667	AIRE.p2	AK077360|5330438D12Rik|327824|RIKEN cDNA 5330438D12 gene
mm9_v1_chr10_+_19949600_19949600	2.47928	AIRE.p2	AK008018|Mtap7|17761|microtubule-associated protein 7	NM_001198636|Mtap7|17761|microtubule-associated protein 7
mm9_v1_chr8_+_47095955_47095964	2.47269	AIRE.p2	BC051150|Lrp2bp|67620|Lrp2 binding protein	NM_026278|Lrp2bp|67620|Lrp2 binding protein	AK007202|Lrp2bp|67620|Lrp2 binding protein	AK015594|Lrp2bp|67620|Lrp2 binding protein
mm9_v1_chr7_-_138554028_138554053	2.47256	AIRE.p2	AK088289|Ikzf5|67143|IKAROS family zinc finger 5
mm9_v1_chr2_-_164104007_164104044	2.47142	AIRE.p2	M35732|Svs4|20941|seminal vesicle secretory protein 4	AK020349|Svs4|20941|seminal vesicle secretory protein 4	BC115604|Svs4|20941|seminal vesicle secretory protein 4	BC115605|Svs4|20941|seminal vesicle secretory protein 4	NM_009300|Svs4|20941|seminal vesicle secretory protein 4
mm9_v1_chr6_+_114347929_114347929	2.46617	AIRE.p2	AK046607|Hrh1|15465|histamine receptor H1	NM_008285|Hrh1|15465|histamine receptor H1
mm9_v1_chr6_+_134591028_134591136	2.46504	AIRE.p2	AK018019|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)	AK169615|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)	AK151342|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)	AK089648|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)	AK007423|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)
mm9_v1_chr1_+_169280112_169280187	2.45947	AIRE.p2	AK165730|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	NM_019993|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK154914|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK168261|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK168309|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK168878|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AB296386|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1
mm9_v1_chr6_-_129050920_129050933	2.45501	AIRE.p2	BC051091|Clec2e|232409|C-type lectin domain family 2, member e	NM_153506|Clec2e|232409|C-type lectin domain family 2, member e
mm9_v1_chr7_+_4866810_4866885	2.45375	AIRE.p2	AK155214|Zfp628|232816|zinc finger protein 628	NM_170759|Zfp628|232816|zinc finger protein 628	AK048291|Zfp628|232816|zinc finger protein 628	BC056945|Zfp628|232816|zinc finger protein 628	BC062973|Zfp628|232816|zinc finger protein 628
mm9_v1_chr11_+_98667577_98667599	2.44882	AIRE.p2	AK031902|Msl1|74026|male-specific lethal 1 homolog (Drosophila)
mm9_v1_chr4_-_25169970_25170022	2.44271	AIRE.p2	AF083394|Fhl5|57756|four and a half LIM domains 5	AK006414|Fhl5|57756|four and a half LIM domains 5	BC048473|Fhl5|57756|four and a half LIM domains 5	NM_021318|Fhl5|57756|four and a half LIM domains 5
mm9_v1_chr10_+_41239248_41239438	2.4337	AIRE.p2	AK145131|Cd164|53599|CD164 antigen	AK169275|Cd164|53599|CD164 antigen	AB028895|Cd164|53599|CD164 antigen	NM_016898|Cd164|53599|CD164 antigen	AK018009|Cd164|53599|CD164 antigen	BC005414|Cd164|53599|CD164 antigen	AB014464|Cd164|53599|CD164 antigen	AF299345|Cd164|53599|CD164 antigen	AK194033|Cd164|53599|CD164 antigen
mm9_v1_chr10_+_39451923_39451975	2.42465	AIRE.p2	AK032532|Rev3l|19714|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)	BC048946|Rev3l|19714|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)	AB031049|Rev3l|19714|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)	NM_011264|Rev3l|19714|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)
mm9_v1_chrX_+_75983101_75983130	2.41593	AIRE.p2	AK014848|Fam47a-ps|70864|family with sequence similarity 47, member A, pseudogene	NM_001164739|Fam47a-ps|70864|family with sequence similarity 47, member A, pseudogene	BC115971|Fam47a-ps|70864|family with sequence similarity 47, member A, pseudogene
mm9_v1_chrX_+_150266835_150266835	2.41362	AIRE.p2	BC068162|Spin2|278240|spindlin family, member 2	NM_001005370|Spin2|278240|spindlin family, member 2
mm9_v1_chr9_-_52484889_52484906	2.40509	AIRE.p2	AK053489|AI593442|330941|expressed sequence AI593442
mm9_v1_chr5_-_97885939_97886039	2.40437	AIRE.p2	AK075761|Gk2|14626|glycerol kinase 2	BC061147|Gk2|14626|glycerol kinase 2	AF117734|Gk2|14626|glycerol kinase 2	NM_010294|Gk2|14626|glycerol kinase 2	BC050764|Gk2|14626|glycerol kinase 2
mm9_v1_chr10_-_127188787_127188853	2.40157	AIRE.p2	AK031480|Gpr182|11536|G protein-coupled receptor 182	NM_007412|Gpr182|11536|G protein-coupled receptor 182
mm9_v1_chr7_+_13063673_13063734	2.39313	AIRE.p2	AK044645|Zfp606|67370|zinc finger protein 606	AK143200|Zfp606|67370|zinc finger protein 606	AK021179|Zfp606|67370|zinc finger protein 606	AK039817|Zfp606|67370|zinc finger protein 606	AK173278|Zfp606|67370|zinc finger protein 606	AK165095|Zfp606|67370|zinc finger protein 606	BC052747|Zfp606|67370|zinc finger protein 606
mm9_v1_chr5_+_66154740_66154759	2.38851	AIRE.p2	BC054549|N4bp2|333789|NEDD4 binding protein 2	NM_001024917|N4bp2|333789|NEDD4 binding protein 2
mm9_v1_chr2_-_79296732_79296799	2.362	AIRE.p2	BC094611|Neurod1|18012|neurogenic differentiation 1	BC018241|Neurod1|18012|neurogenic differentiation 1	AK018781|Neurod1|18012|neurogenic differentiation 1	AK005073|Neurod1|18012|neurogenic differentiation 1	NM_010894|Neurod1|18012|neurogenic differentiation 1	AK028055|Neurod1|18012|neurogenic differentiation 1
mm9_v1_chr5_-_138066184_138066305	2.3619	AIRE.p2	AK016870|Fbxo24|71176|F-box protein 24	NM_027708|Fbxo24|71176|F-box protein 24
mm9_v1_chr8_-_74195650_74195661	2.36072	AIRE.p2	NM_001029873|Unc13a|382018|unc-13 homolog A (C. elegans)	AK035920|Unc13a|382018|unc-13 homolog A (C. elegans)
mm9_v1_chr18_-_32071556_32071556	2.3494	AIRE.p2	NM_026006|Sft2d3|67158|SFT2 domain containing 3
mm9_v1_chr16_+_91465283_91465348	2.34878	AIRE.p2	AK162627|A930006K02Rik|78433|RIKEN cDNA A930006K02 gene	AK038602|A930006K02Rik|78433|RIKEN cDNA A930006K02 gene
mm9_v1_chr11_-_62190182_62190262	2.34113	AIRE.p2	AB093281|Ncor1|20185|nuclear receptor co-repressor 1
mm9_v1_chr11_+_53138176_53138190	2.33918	AIRE.p2	AK010803|Zcchc10|67966|zinc finger, CCHC domain containing 10	AK027985|Zcchc10|67966|zinc finger, CCHC domain containing 10	BC025078|Zcchc10|67966|zinc finger, CCHC domain containing 10	AK020177|Zcchc10|67966|zinc finger, CCHC domain containing 10	AK169856|Zcchc10|67966|zinc finger, CCHC domain containing 10	BC087902|Zcchc10|67966|zinc finger, CCHC domain containing 10	NM_026479|Zcchc10|67966|zinc finger, CCHC domain containing 10
mm9_v1_chr1_+_179659944_179659944	2.33878	AIRE.p2	AK006014|1700016C15Rik|69428|RIKEN cDNA 1700016C15 gene	NM_027077|1700016C15Rik|69428|RIKEN cDNA 1700016C15 gene
mm9_v1_chr4_+_136166351_136166390	2.3357	AIRE.p2	AK016074|4930549C01Rik|67663|RIKEN cDNA 4930549C01 gene	NM_026300|4930549C01Rik|67663|RIKEN cDNA 4930549C01 gene	BC048442|4930549C01Rik|67663|RIKEN cDNA 4930549C01 gene	AK015053|4930549C01Rik|67663|RIKEN cDNA 4930549C01 gene
mm9_v1_chr6_+_116123984_116124113	2.33403	AIRE.p2	AK210116|Gm8203|666634|predicted pseudogene 8203
mm9_v1_chrM_-_13886_13905	2.332	AIRE.p2	
mm9_v1_chr5_-_105411580_105411736	2.32541	AIRE.p2	BC029095|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AK037614|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AF324242|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AK051880|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AK156626|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	BC138773|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	BC138772|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	NM_030239|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AK030831|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3
mm9_v1_chrX_-_93152262_93152300	2.32072	AIRE.p2	AK089160|Las1l|76130|LAS1-like (S. cerevisiae)	NM_152822|Las1l|76130|LAS1-like (S. cerevisiae)	AK163919|Las1l|76130|LAS1-like (S. cerevisiae)
mm9_v1_chrX_+_155970637_155970677	2.31394	AIRE.p2	BC075674|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene	AK145159|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene
mm9_v1_chr17_+_34734816_34734871	2.31086	AIRE.p2	L33412|Ager|11596|advanced glycosylation end product-specific receptor	AB207883|Ager|11596|advanced glycosylation end product-specific receptor	EU520325|Ager|11596|advanced glycosylation end product-specific receptor	EU570240|Ager|11596|advanced glycosylation end product-specific receptor	EU570241|Ager|11596|advanced glycosylation end product-specific receptor	EU570242|Ager|11596|advanced glycosylation end product-specific receptor	EU570243|Ager|11596|advanced glycosylation end product-specific receptor	EU570244|Ager|11596|advanced glycosylation end product-specific receptor	EU570245|Ager|11596|advanced glycosylation end product-specific receptor	EU570246|Ager|11596|advanced glycosylation end product-specific receptor	EU570247|Ager|11596|advanced glycosylation end product-specific receptor	EU906857|Ager|11596|advanced glycosylation end product-specific receptor	EU906858|Ager|11596|advanced glycosylation end product-specific receptor	EU906859|Ager|11596|advanced glycosylation end product-specific receptor	EU906860|Ager|11596|advanced glycosylation end product-specific receptor	EU906861|Ager|11596|advanced glycosylation end product-specific receptor	EU906862|Ager|11596|advanced glycosylation end product-specific receptor	EU906863|Ager|11596|advanced glycosylation end product-specific receptor	EU906864|Ager|11596|advanced glycosylation end product-specific receptor	EU906865|Ager|11596|advanced glycosylation end product-specific receptor
mm9_v1_chr17_-_23923018_23923069	2.30909	AIRE.p2	AK019378|Flywch2|76917|FLYWCH family member 2	AK013108|Flywch2|76917|FLYWCH family member 2	NM_029798|Flywch2|76917|FLYWCH family member 2
mm9_v1_chr7_+_13063644_13063667	2.2951	AIRE.p2	AK032301|Zfp606|67370|zinc finger protein 606	AK139269|Zfp606|67370|zinc finger protein 606	NM_001039951|Zfp606|67370|zinc finger protein 606	NM_026112|Zfp606|67370|zinc finger protein 606	AK010575|Zfp606|67370|zinc finger protein 606
mm9_v1_chr17_+_35978442_35978442	2.29268	AIRE.p2	NM_001010833|Mdc1|240087|mediator of DNA damage checkpoint 1
mm9_v1_chr3_+_84668066_84668066	2.29227	AIRE.p2	BC066093|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177774|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr4_+_88428034_88428034	2.29027	AIRE.p2	AK046550|Ifnz|319146|interferon zeta	NM_197889|Ifnz|319146|interferon zeta
mm9_v1_chr14_-_59761715_59761729	2.28893	AIRE.p2	AK015075|1700129C05Rik|67932|RIKEN cDNA 1700129C05 gene	AK006084|1700129C05Rik|67932|RIKEN cDNA 1700129C05 gene	AK007313|1700129C05Rik|67932|RIKEN cDNA 1700129C05 gene	BC049552|1700129C05Rik|67932|RIKEN cDNA 1700129C05 gene	NM_026461|1700129C05Rik|67932|RIKEN cDNA 1700129C05 gene
mm9_v1_chr2_-_33323966_33324113	2.28544	AIRE.p2	AK206442|Zbtb43|71834|zinc finger and BTB domain containing 43	AK212293|Zbtb43|71834|zinc finger and BTB domain containing 43	AK122277|Zbtb43|71834|zinc finger and BTB domain containing 43	AK005818|Zbtb43|71834|zinc finger and BTB domain containing 43	AK147806|Zbtb43|71834|zinc finger and BTB domain containing 43	BC043117|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_001025594|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_027947|Zbtb43|71834|zinc finger and BTB domain containing 43
mm9_v1_chr9_+_46081146_46081375	2.28331	AIRE.p2	NM_011752|Zfp259|22687|zinc finger protein 259	AK158995|Zfp259|22687|zinc finger protein 259	AK170372|Zfp259|22687|zinc finger protein 259	AK044472|Zfp259|22687|zinc finger protein 259	AB041612|Zfp259|22687|zinc finger protein 259	BC021397|Zfp259|22687|zinc finger protein 259	AK167849|Zfp259|22687|zinc finger protein 259	AK168061|Zfp259|22687|zinc finger protein 259	AK215085|Zfp259|22687|zinc finger protein 259
mm9_v1_chr10_-_78215809_78215811	2.28063	AIRE.p2	AK016452|Ccdc105|70976|coiled-coil domain containing 105	NM_027630|Ccdc105|70976|coiled-coil domain containing 105
mm9_v1_chrX_-_34650263_34650340	2.28058	AIRE.p2	AK019989|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC058761|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK162222|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK011606|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK145431|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	NM_026573|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC117769|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC117770|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)
mm9_v1_chr4_+_122731563_122731731	2.27913	AIRE.p2	AK188355|Trit1|66966|tRNA isopentenyltransferase 1	AK219389|Trit1|66966|tRNA isopentenyltransferase 1	AK189511|Trit1|66966|tRNA isopentenyltransferase 1
mm9_v1_chr6_-_56319574_56319627	2.27798	AIRE.p2	AK077123|Pde1c|18575|phosphodiesterase 1C	AK015375|Pde1c|18575|phosphodiesterase 1C	AK014887|Pde1c|18575|phosphodiesterase 1C	AK133243|Pde1c|18575|phosphodiesterase 1C	AK029531|Pde1c|18575|phosphodiesterase 1C	NM_001159955|Pde1c|18575|phosphodiesterase 1C	NM_001159956|Pde1c|18575|phosphodiesterase 1C	NM_001159957|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr7_+_113988126_113988127	2.27536	AIRE.p2	NM_146596|Olfr703|258589|olfactory receptor 703	BC111815|Olfr703|258589|olfactory receptor 703
mm9_v1_chr14_-_64162562_64162594	2.25609	AIRE.p2	AK152320|Mtmr9|210376|myotubularin related protein 9
mm9_v1_chr14_-_21315902_21316122	2.24897	AIRE.p2	AK014794|Zmynd17|74843|zinc finger, MYND domain containing 17	BC119773|Zmynd17|74843|zinc finger, MYND domain containing 17	BC119816|Zmynd17|74843|zinc finger, MYND domain containing 17	NM_029104|Zmynd17|74843|zinc finger, MYND domain containing 17
mm9_v1_chr9_+_104955563_104955826	2.24565	AIRE.p2	AK008592|Mrpl3|94062|mitochondrial ribosomal protein L3	AK145687|Mrpl3|94062|mitochondrial ribosomal protein L3	AK169272|Mrpl3|94062|mitochondrial ribosomal protein L3	NM_053159|Mrpl3|94062|mitochondrial ribosomal protein L3	AK077857|Mrpl3|94062|mitochondrial ribosomal protein L3	AK002509|Mrpl3|94062|mitochondrial ribosomal protein L3	BC011128|Mrpl3|94062|mitochondrial ribosomal protein L3	BC016586|Mrpl3|94062|mitochondrial ribosomal protein L3	BC034877|Mrpl3|94062|mitochondrial ribosomal protein L3	AB049633|Mrpl3|94062|mitochondrial ribosomal protein L3	AK217246|Mrpl3|94062|mitochondrial ribosomal protein L3
mm9_v1_chr19_+_53218486_53218486	2.24499	AIRE.p2	BC037116|Add3|27360|adducin 3 (gamma)	NM_013758|Add3|27360|adducin 3 (gamma)
mm9_v1_chr5_+_151062363_151062504	2.24291	AIRE.p2	NM_172887|Fry|320365|furry homolog (Drosophila)
mm9_v1_chr17_+_46848407_46848441	2.23203	AIRE.p2	BC003424|Pex6|224824|peroxisomal biogenesis factor 6	NM_145488|Pex6|224824|peroxisomal biogenesis factor 6	AK083898|Pex6|224824|peroxisomal biogenesis factor 6	AK143173|Pex6|224824|peroxisomal biogenesis factor 6	AK030565|Pex6|224824|peroxisomal biogenesis factor 6	AK220525|Pex6|224824|peroxisomal biogenesis factor 6
mm9_v1_chr9_-_42280256_42280323	2.22987	AIRE.p2	BC139386|Tbcel|272589|tubulin folding cofactor E-like	BC139387|Tbcel|272589|tubulin folding cofactor E-like	AK077017|Tbcel|272589|tubulin folding cofactor E-like	NM_173038|Tbcel|272589|tubulin folding cofactor E-like	AK084854|Tbcel|272589|tubulin folding cofactor E-like
mm9_v1_chr7_-_86762417_86762542	2.2273	AIRE.p2	AY254686|Rhcg|56315|Rhesus blood group-associated C glycoprotein	BC119045|Rhcg|56315|Rhesus blood group-associated C glycoprotein	BC137652|Rhcg|56315|Rhesus blood group-associated C glycoprotein	AF193810|Rhcg|56315|Rhesus blood group-associated C glycoprotein	AK076757|Rhcg|56315|Rhesus blood group-associated C glycoprotein	NM_019799|Rhcg|56315|Rhesus blood group-associated C glycoprotein
mm9_v1_chr8_+_47254909_47254909	2.2217	AIRE.p2	BC058092|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	NM_025747|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene
mm9_v1_chr4_+_89885510_89885510	2.2201	AIRE.p2	AF290196|Zfp352|236537|zinc finger protein 352	NM_153102|Zfp352|236537|zinc finger protein 352
mm9_v1_chr17_+_87316687_87316777	2.20829	AIRE.p2	NM_030104|1700090G07Rik|78469|RIKEN cDNA 1700090G07 gene	AK018916|1700090G07Rik|78469|RIKEN cDNA 1700090G07 gene	BC100486|1700090G07Rik|78469|RIKEN cDNA 1700090G07 gene	AK076910|1700090G07Rik|78469|RIKEN cDNA 1700090G07 gene
mm9_v1_chr6_-_134847832_134848056	2.20731	AIRE.p2	NM_001167695|Gpr19|14760|G protein-coupled receptor 19	NM_001167696|Gpr19|14760|G protein-coupled receptor 19	BC021648|Gpr19|14760|G protein-coupled receptor 19	AK132917|Gpr19|14760|G protein-coupled receptor 19	AK140770|Gpr19|14760|G protein-coupled receptor 19	AK160688|Gpr19|14760|G protein-coupled receptor 19	NM_001167693|Gpr19|14760|G protein-coupled receptor 19	NM_001167694|Gpr19|14760|G protein-coupled receptor 19	NM_001167700|Gpr19|14760|G protein-coupled receptor 19
mm9_v1_chr9_+_21760196_21760229	2.20087	AIRE.p2	NM_025870|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	BC150493|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	AK009864|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	BC019749|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	AK043948|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene
mm9_v1_chr17_-_29079205_29079208	2.19916	AIRE.p2	BC100437|Pxt1|69307|peroxisomal, testis specific 1	AF486826|Pxt1|69307|peroxisomal, testis specific 1	NM_153390|Pxt1|69307|peroxisomal, testis specific 1	AK005593|Pxt1|69307|peroxisomal, testis specific 1
mm9_v1_chrX_+_54662330_54662330	2.19352	AIRE.p2	NM_001128625|Gm364|245423|predicted gene 364
mm9_v1_chr7_+_46773116_46773135	2.19301	AIRE.p2	BC080693|Zfp619|70227|zinc finger protein 619	NM_001004139|Zfp619|70227|zinc finger protein 619
mm9_v1_chr9_-_107673288_107673315	2.18961	AIRE.p2	AK133999|Rbm5|83486|RNA binding motif protein 5	BC042419|Rbm5|83486|RNA binding motif protein 5	BC023854|Rbm5|83486|RNA binding motif protein 5	BC054729|Rbm5|83486|RNA binding motif protein 5	BC060985|Rbm5|83486|RNA binding motif protein 5
mm9_v1_chr4_+_140924106_140924134	2.18583	AIRE.p2	BC147048|Fam131c|277743|family with sequence similarity 131, member C	BC147049|Fam131c|277743|family with sequence similarity 131, member C	NM_001085513|Fam131c|277743|family with sequence similarity 131, member C
mm9_v1_chr4_-_147016606_147016616	2.17583	AIRE.p2	BC058858|2610305D13Rik|112422|RIKEN cDNA 2610305D13 gene	NM_145078|2610305D13Rik|112422|RIKEN cDNA 2610305D13 gene
mm9_v1_chr8_-_46380165_46380188	2.16898	AIRE.p2	NM_008455|Klkb1|16621|kallikrein B, plasma 1
mm9_v1_chr11_+_94828911_94828981	2.15812	AIRE.p2	BC061119|Hils1|54388|histone H1-like protein in spermatids 1	BC050966|Hils1|54388|histone H1-like protein in spermatids 1	AK005718|Hils1|54388|histone H1-like protein in spermatids 1	AB022320|Hils1|54388|histone H1-like protein in spermatids 1	AY286319|Hils1|54388|histone H1-like protein in spermatids 1	NM_018792|Hils1|54388|histone H1-like protein in spermatids 1	AB045724|Hils1|54388|histone H1-like protein in spermatids 1
mm9_v1_chr19_+_46782153_46782204	2.14273	AIRE.p2	AK009814|As3mt|57344|arsenic (+3 oxidation state) methyltransferase
mm9_v1_chr1_-_132526172_132526182	2.13987	AIRE.p2	BC119121|Zp3r|22789|zona pellucida 3 receptor	BC119123|Zp3r|22789|zona pellucida 3 receptor	U17108|Zp3r|22789|zona pellucida 3 receptor	NM_009581|Zp3r|22789|zona pellucida 3 receptor
mm9_v1_chr1_-_99024782_99024879	2.13848	AIRE.p2	BC139066|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	BC139067|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK132668|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK161249|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK016647|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK029505|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	NM_028942|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1
mm9_v1_chr15_+_96199877_96199934	2.13466	AIRE.p2	AK014481|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)
mm9_v1_chr18_-_35900005_35900208	2.12917	AIRE.p2	DQ910493|Tmem173|72512|transmembrane protein 173	AK153868|Tmem173|72512|transmembrane protein 173	AK146284|Tmem173|72512|transmembrane protein 173	AX775911|Tmem173|72512|transmembrane protein 173	AK077788|Tmem173|72512|transmembrane protein 173	AK157370|Tmem173|72512|transmembrane protein 173	AK158458|Tmem173|72512|transmembrane protein 173	BC046640|Tmem173|72512|transmembrane protein 173	AK171612|Tmem173|72512|transmembrane protein 173	AK012006|Tmem173|72512|transmembrane protein 173	AK171065|Tmem173|72512|transmembrane protein 173	AK171203|Tmem173|72512|transmembrane protein 173	AK089405|Tmem173|72512|transmembrane protein 173	AK170724|Tmem173|72512|transmembrane protein 173	NM_028261|Tmem173|72512|transmembrane protein 173
mm9_v1_chr3_+_142428186_142428231	2.12899	AIRE.p2	AK146223|Gtf2b|229906|general transcription factor IIB	AK131856|Gtf2b|229906|general transcription factor IIB	AK133097|Gtf2b|229906|general transcription factor IIB	AK133825|Gtf2b|229906|general transcription factor IIB	AK143935|Gtf2b|229906|general transcription factor IIB	AK145403|Gtf2b|229906|general transcription factor IIB	AK146666|Gtf2b|229906|general transcription factor IIB	AK146910|Gtf2b|229906|general transcription factor IIB	AK151577|Gtf2b|229906|general transcription factor IIB	BC016637|Gtf2b|229906|general transcription factor IIB	NM_145546|Gtf2b|229906|general transcription factor IIB
mm9_v1_chr5_+_136533136_136533238	2.1276	AIRE.p2	BC115563|2310043J07Rik|69665|RIKEN cDNA 2310043J07 gene	BC115564|2310043J07Rik|69665|RIKEN cDNA 2310043J07 gene	NM_027158|2310043J07Rik|69665|RIKEN cDNA 2310043J07 gene	BC099515|2310043J07Rik|69665|RIKEN cDNA 2310043J07 gene
mm9_v1_chr3_-_120874549_120874636	2.11883	AIRE.p2	AK014130|Rwdd3|66568|RWD domain containing 3	AK134288|Rwdd3|66568|RWD domain containing 3	AK153551|Rwdd3|66568|RWD domain containing 3	AF439556|Rwdd3|66568|RWD domain containing 3	AF439557|Rwdd3|66568|RWD domain containing 3	AK011007|Rwdd3|66568|RWD domain containing 3	AK011008|Rwdd3|66568|RWD domain containing 3	BC128287|Rwdd3|66568|RWD domain containing 3	BC128288|Rwdd3|66568|RWD domain containing 3	BC139340|Rwdd3|66568|RWD domain containing 3	BC139342|Rwdd3|66568|RWD domain containing 3	BC150838|Rwdd3|66568|RWD domain containing 3	AK151329|Rwdd3|66568|RWD domain containing 3	AK151467|Rwdd3|66568|RWD domain containing 3	NM_025637|Rwdd3|66568|RWD domain containing 3	NM_028456|Rwdd3|66568|RWD domain containing 3
mm9_v1_chr7_+_142843598_142843624	2.11872	AIRE.p2	U36758|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	AK154910|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	AK160947|Ptpre|19267|protein tyrosine phosphatase, receptor type, E
mm9_v1_chr12_+_35669432_35669444	2.11044	AIRE.p2	AK077203|Prps1l1|75456|phosphoribosyl pyrophosphate synthetase 1-like 1	NM_029294|Prps1l1|75456|phosphoribosyl pyrophosphate synthetase 1-like 1	BC109355|Prps1l1|75456|phosphoribosyl pyrophosphate synthetase 1-like 1
mm9_v1_chr8_-_46380114_46380132	2.09499	AIRE.p2	BC026555|Klkb1|16621|kallikrein B, plasma 1
mm9_v1_chr14_-_64147067_64147107	2.09437	AIRE.p2	AF073881|Mtmr9|210376|myotubularin related protein 9
mm9_v1_chr10_-_43621518_43621567	2.08899	AIRE.p2	BC070459|Qrsl1|76563|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	AK012351|Qrsl1|76563|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	NM_001081054|Qrsl1|76563|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	AK041347|Qrsl1|76563|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	AK038801|Qrsl1|76563|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
mm9_v1_chr8_+_77972592_77972689	2.08723	AIRE.p2	AK005693|1700007B14Rik|71831|RIKEN cDNA 1700007B14 gene	NM_001164235|1700007B14Rik|71831|RIKEN cDNA 1700007B14 gene	NM_027944|1700007B14Rik|71831|RIKEN cDNA 1700007B14 gene	BC117767|1700007B14Rik|71831|RIKEN cDNA 1700007B14 gene	BC117768|1700007B14Rik|71831|RIKEN cDNA 1700007B14 gene
mm9_v1_chr5_-_23122181_23122418	2.08223	AIRE.p2	AB006036|Srpk2|20817|serine/arginine-rich protein specific kinase 2	BC020178|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK136861|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK169580|Srpk2|20817|serine/arginine-rich protein specific kinase 2	NM_009274|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chrX_+_104284572_104284678	2.07697	AIRE.p2	AK038124|P2ry10|78826|purinergic receptor P2Y, G-protein coupled 10	AK041351|P2ry10|78826|purinergic receptor P2Y, G-protein coupled 10	AK088234|P2ry10|78826|purinergic receptor P2Y, G-protein coupled 10	NM_172435|P2ry10|78826|purinergic receptor P2Y, G-protein coupled 10	BC053707|P2ry10|78826|purinergic receptor P2Y, G-protein coupled 10
mm9_v1_chr9_-_107673316_107673317	2.06959	AIRE.p2	AK161794|Rbm5|83486|RNA binding motif protein 5	BC054820|Rbm5|83486|RNA binding motif protein 5	BC031899|Rbm5|83486|RNA binding motif protein 5
mm9_v1_chr7_-_94641859_94642021	2.06051	AIRE.p2	M26729|Tyr|22173|tyrosinase	AK148341|Tyr|22173|tyrosinase	BC079678|Tyr|22173|tyrosinase	AK148432|Tyr|22173|tyrosinase	D00440|Tyr|22173|tyrosinase	M24560|Tyr|22173|tyrosinase	NM_011661|Tyr|22173|tyrosinase	D00131|Tyr|22173|tyrosinase	AK148172|Tyr|22173|tyrosinase	AK148357|Tyr|22173|tyrosinase	AK014619|Tyr|22173|tyrosinase	AY526904|Tyr|22173|tyrosinase	X12782|Tyr|22173|tyrosinase	M20234|Tyr|22173|tyrosinase
mm9_v1_chr5_-_92792262_92792321	2.05201	AIRE.p2	AK040051|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	BC025903|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	AF136449|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	AF178672|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	AF179872|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	NM_019494|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	AK020750|Cxcl11|56066|chemokine (C-X-C motif) ligand 11
mm9_v1_chr5_-_124804519_124804530	2.04994	AIRE.p2	BC147052|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1	BC147053|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm9_v1_chr9_-_86358490_86358538	2.04549	AIRE.p2	BC115687|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein	BC115686|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein	AK049229|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein	NM_027394|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein	AK011446|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein
mm9_v1_chr9_-_107673268_107673286	2.03994	AIRE.p2	BC043058|Rbm5|83486|RNA binding motif protein 5	BC019766|Rbm5|83486|RNA binding motif protein 5
mm9_v1_chr7_-_109713935_109713982	2.0295	AIRE.p2	BC010580|Trim21|20821|tripartite motif-containing 21	L27990|Trim21|20821|tripartite motif-containing 21	AK150484|Trim21|20821|tripartite motif-containing 21	AK171489|Trim21|20821|tripartite motif-containing 21	AK152619|Trim21|20821|tripartite motif-containing 21	AK141294|Trim21|20821|tripartite motif-containing 21	NM_001082552|Trim21|20821|tripartite motif-containing 21	NM_009277|Trim21|20821|tripartite motif-containing 21
mm9_v1_chr5_+_11594955_11594955	2.0128	AIRE.p2	BC110565|Gm6460|623898|predicted gene 6460	NM_001037919|Gm6460|623898|predicted gene 6460
mm9_v1_chr13_-_64599099_64599099	2.01084	AIRE.p2	AK004471|1190003K10Rik|68880|RIKEN cDNA 1190003K10 gene	NM_001195435|1190003K10Rik|68880|RIKEN cDNA 1190003K10 gene
mm9_v1_chr7_-_25873560_25873562	2.00877	AIRE.p2	
mm9_v1_chr5_+_135582754_135582797	2.00854	AIRE.p2	AK143999|Mlxipl|58805|MLX interacting protein-like	AK143800|Mlxipl|58805|MLX interacting protein-like	AF245475|Mlxipl|58805|MLX interacting protein-like	AF245476|Mlxipl|58805|MLX interacting protein-like	AF245477|Mlxipl|58805|MLX interacting protein-like	AF245478|Mlxipl|58805|MLX interacting protein-like	AF245479|Mlxipl|58805|MLX interacting protein-like	NM_021455|Mlxipl|58805|MLX interacting protein-like	AF156604|Mlxipl|58805|MLX interacting protein-like	BC064053|Mlxipl|58805|MLX interacting protein-like
mm9_v1_chr7_-_111299000_111299069	1.99154	AIRE.p2	BC111901|Ubqlnl|244179|ubiquilin-like	BC113134|Ubqlnl|244179|ubiquilin-like	AK076645|Ubqlnl|244179|ubiquilin-like	NM_198624|Ubqlnl|244179|ubiquilin-like
mm9_v1_chr11_+_34214821_34214821	1.98381	AIRE.p2	BC072605|Fam196b|574403|family with sequence similarity 196, member B	NM_001025382|Fam196b|574403|family with sequence similarity 196, member B
mm9_v1_chr15_+_52127107_52127278	1.97147	AIRE.p2	AK050494|Slc30a8|239436|solute carrier family 30 (zinc transporter), member 8	NM_172816|Slc30a8|239436|solute carrier family 30 (zinc transporter), member 8	AK050482|Slc30a8|239436|solute carrier family 30 (zinc transporter), member 8	BC117544|Slc30a8|239436|solute carrier family 30 (zinc transporter), member 8	BC118521|Slc30a8|239436|solute carrier family 30 (zinc transporter), member 8
mm9_v1_chr6_-_148719426_148719561	1.96912	AIRE.p2	X67534|Ipo8|320727|importin 8
mm9_v1_chr4_-_94223435_94223491	1.95638	AIRE.p2	AK046647|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK076487|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK013385|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK032696|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	BC020067|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK150311|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK140382|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK171141|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK160297|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK160572|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	NM_026368|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene
mm9_v1_chr16_+_17208227_17208227	1.95318	AIRE.p2	NM_001033338|Rimbp3|239731|RIMS binding protein 3
mm9_v1_chr5_-_97821348_97821397	1.951	AIRE.p2	AK135863|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	BC139104|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	BC145776|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	NM_001033191|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	AK133248|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	EU192141|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit
mm9_v1_chr4_+_94406190_94406316	1.93891	AIRE.p2	X67553|Tek|21687|endothelial-specific receptor tyrosine kinase	X71426|Tek|21687|endothelial-specific receptor tyrosine kinase	S67051|Tek|21687|endothelial-specific receptor tyrosine kinase
mm9_v1_chr2_+_24817941_24817990	1.93872	AIRE.p2	AK152000|Wdr85|67228|WD repeat domain 85	AK153537|Wdr85|67228|WD repeat domain 85	NM_026044|Wdr85|67228|WD repeat domain 85	BC086486|Wdr85|67228|WD repeat domain 85	AK013297|Wdr85|67228|WD repeat domain 85	AK078448|Wdr85|67228|WD repeat domain 85	AK087998|Wdr85|67228|WD repeat domain 85	BC056962|Wdr85|67228|WD repeat domain 85
mm9_v1_chr11_-_99016390_99016390	1.93768	AIRE.p2	AK037965|Ccr7|12775|chemokine (C-C motif) receptor 7	AK154349|Ccr7|12775|chemokine (C-C motif) receptor 7	AK154736|Ccr7|12775|chemokine (C-C motif) receptor 7	AK154849|Ccr7|12775|chemokine (C-C motif) receptor 7	NM_007719|Ccr7|12775|chemokine (C-C motif) receptor 7
mm9_v1_chr4_+_147822690_147822721	1.93595	AIRE.p2	NM_020009|Mtor|56717|mechanistic target of rapamycin (serine/threonine kinase)	AK172584|Mtor|56717|mechanistic target of rapamycin (serine/threonine kinase)	AF152838|Mtor|56717|mechanistic target of rapamycin (serine/threonine kinase)	AK036004|Mtor|56717|mechanistic target of rapamycin (serine/threonine kinase)
mm9_v1_chr13_-_8870975_8870975	1.93495	AIRE.p2	NM_001039388|Wdr37|207615|WD repeat domain 37
mm9_v1_chr17_-_57013869_57013869	1.93326	AIRE.p2	DQ250679|Acsbg2|328845|acyl-CoA synthetase bubblegum family member 2	NM_001039114|Acsbg2|328845|acyl-CoA synthetase bubblegum family member 2
mm9_v1_chr6_-_88848650_88848773	1.93124	AIRE.p2	AF004105|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK129039|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK077801|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK088378|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	BC055318|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK145176|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK088156|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK146187|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	D86725|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK146375|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK037751|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	NM_008564|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)
mm9_v1_chr9_-_53012444_53012529	1.92552	AIRE.p2	AK166787|Ddx10|77591|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
mm9_v1_chr5_+_31754808_31754902	1.92501	AIRE.p2	NM_172993|Zfp512|269639|zinc finger protein 512	AK173267|Zfp512|269639|zinc finger protein 512	AK146353|Zfp512|269639|zinc finger protein 512	AK084205|Zfp512|269639|zinc finger protein 512	AK149921|Zfp512|269639|zinc finger protein 512	AK154918|Zfp512|269639|zinc finger protein 512	BC089160|Zfp512|269639|zinc finger protein 512	BC066136|Zfp512|269639|zinc finger protein 512
mm9_v1_chr14_-_66696533_66696571	1.92463	AIRE.p2	AK161261|Adam2|11495|a disintegrin and metallopeptidase domain 2	AK161266|Adam2|11495|a disintegrin and metallopeptidase domain 2	U16242|Adam2|11495|a disintegrin and metallopeptidase domain 2	AK016550|Adam2|11495|a disintegrin and metallopeptidase domain 2	NM_009618|Adam2|11495|a disintegrin and metallopeptidase domain 2	U38806|Adam2|11495|a disintegrin and metallopeptidase domain 2
mm9_v1_chr9_-_95758738_95758738	1.92158	AIRE.p2	BC053441|1700065D16Rik|73410|RIKEN cDNA 1700065D16 gene	NM_028533|1700065D16Rik|73410|RIKEN cDNA 1700065D16 gene
mm9_v1_chr7_+_128084130_128084187	1.91985	AIRE.p2	AK002918|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr6_-_28399248_28399339	1.91917	AIRE.p2	BC131908|Pax4|18506|paired box gene 4	BC131906|Pax4|18506|paired box gene 4	BC145168|Pax4|18506|paired box gene 4	BC145169|Pax4|18506|paired box gene 4	AB010557|Pax4|18506|paired box gene 4	AF145233|Pax4|18506|paired box gene 4	AB010558|Pax4|18506|paired box gene 4	AB008912|Pax4|18506|paired box gene 4	NM_001159925|Pax4|18506|paired box gene 4	NM_001159926|Pax4|18506|paired box gene 4	NM_011038|Pax4|18506|paired box gene 4
mm9_v1_chr6_-_49214015_49214054	1.91653	AIRE.p2	AK170599|Tra2a|101214|transformer 2 alpha homolog (Drosophila)	AK076230|Tra2a|101214|transformer 2 alpha homolog (Drosophila)	AK089980|Tra2a|101214|transformer 2 alpha homolog (Drosophila)	AK171708|Tra2a|101214|transformer 2 alpha homolog (Drosophila)	AK005187|Tra2a|101214|transformer 2 alpha homolog (Drosophila)	NM_198102|Tra2a|101214|transformer 2 alpha homolog (Drosophila)	AK148552|Tra2a|101214|transformer 2 alpha homolog (Drosophila)
mm9_v1_chr4_-_107890526_107890526	1.91477	AIRE.p2	NM_001167936|Zyg11a|230590|zyg-11 homolog A (C. elegans)
mm9_v1_chr5_+_37442095_37442154	1.91313	AIRE.p2	NM_178394|Jakmip1|76071|janus kinase and microtubule interacting protein 1	AK077298|Jakmip1|76071|janus kinase and microtubule interacting protein 1	AK143621|Jakmip1|76071|janus kinase and microtubule interacting protein 1
mm9_v1_chr7_-_134281327_134281330	1.90929	AIRE.p2	AK041480|Spn|20737|sialophorin	AK041712|Spn|20737|sialophorin	AK077764|Spn|20737|sialophorin	AK134098|Spn|20737|sialophorin	NM_001037810|Spn|20737|sialophorin	NM_009259|Spn|20737|sialophorin
mm9_v1_chr13_-_29947456_29947544	1.89728	AIRE.p2	BC016073|Cdkal1|68916|CDK5 regulatory subunit associated protein 1-like 1	NM_144536|Cdkal1|68916|CDK5 regulatory subunit associated protein 1-like 1	AK158546|Cdkal1|68916|CDK5 regulatory subunit associated protein 1-like 1	AK041864|Cdkal1|68916|CDK5 regulatory subunit associated protein 1-like 1	AK018346|Cdkal1|68916|CDK5 regulatory subunit associated protein 1-like 1	AK169761|Cdkal1|68916|CDK5 regulatory subunit associated protein 1-like 1	AK082629|Cdkal1|68916|CDK5 regulatory subunit associated protein 1-like 1	AK045506|Cdkal1|68916|CDK5 regulatory subunit associated protein 1-like 1
mm9_v1_chr4_-_151822815_151822985	1.88942	AIRE.p2	AK152613|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	L48983|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	AK157053|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm9_v1_chr4_+_143309357_143309357	1.8859	AIRE.p2	NM_001085412|Gm13078|277666|predicted gene 13078
mm9_v1_chrX_+_20127488_20127626	1.88456	AIRE.p2	D86217|Rgn|19733|regucalcin
mm9_v1_chr6_-_82602836_82602872	1.87486	AIRE.p2	BC023189|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK167631|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK010135|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK010300|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	NM_025882|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK145365|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK011595|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK160582|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)
mm9_v1_chr17_-_35299913_35299918	1.87128	AIRE.p2	AK220526|Prrc2a|53761|proline-rich coiled-coil 2A
mm9_v1_chr14_-_64162509_64162554	1.86806	AIRE.p2	BC145946|Mtmr9|210376|myotubularin related protein 9	BC145948|Mtmr9|210376|myotubularin related protein 9
mm9_v1_chr1_+_135206360_135206408	1.86579	AIRE.p2	AY707855|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)	BC024448|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)	AK002581|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)	AK141378|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)	NM_026680|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)
mm9_v1_chr11_-_99105293_99105435	1.86462	AIRE.p2	BC079890|Krt222|268481|keratin 222	AK031954|Krt222|268481|keratin 222	NM_172946|Krt222|268481|keratin 222	AK044068|Krt222|268481|keratin 222	AK138778|Krt222|268481|keratin 222
mm9_v1_chr4_+_146125090_146125090	1.85562	AIRE.p2	BC108352|Zfp600|667666|zinc finger protein 600	NM_001177545|Zfp600|667666|zinc finger protein 600
mm9_v1_chr4_-_60514761_60514831	1.8464	AIRE.p2	BC012221|Mup1|17840|major urinary protein 1	BC013649|Mup1|17840|major urinary protein 1	BC106092|Mup1|17840|major urinary protein 1	BC037152|Mup1|17840|major urinary protein 1	BC091775|Mup1|17840|major urinary protein 1	M28649|Mup1|17840|major urinary protein 1	M16355|Mup1|17840|major urinary protein 1	NM_001163010|Mup1|17840|major urinary protein 1	NM_001163011|Mup1|17840|major urinary protein 1	NM_031188|Mup1|17840|major urinary protein 1
mm9_v1_chr6_+_134590957_134591017	1.84061	AIRE.p2	NM_026371|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)	BC023059|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)
mm9_v1_chr4_+_73888400_73888400	1.83005	AIRE.p2	BC042424|Kdm4c|76804|lysine (K)-specific demethylase 4C	NM_001172095|Kdm4c|76804|lysine (K)-specific demethylase 4C
mm9_v1_chr16_-_14159346_14159388	1.82645	AIRE.p2	AK158881|4921513D23Rik|223989|RIKEN cDNA 4921513D23 gene	NM_001081154|4921513D23Rik|223989|RIKEN cDNA 4921513D23 gene
mm9_v1_chr14_+_33647147_33647147	1.82336	AIRE.p2	NM_001164485|Fam170b|105511|family with sequence similarity 170, member B
mm9_v1_chr15_+_57747523_57747567	1.82206	AIRE.p2	AK084542|Wdr67|210544|WD repeat domain 67
mm9_v1_chr6_+_126889979_126890004	1.82184	AIRE.p2	AK037095|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK045541|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	NM_138594|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK043521|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK137201|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK042976|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK046707|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed
mm9_v1_chr18_+_37571327_37571327	1.8201	AIRE.p2	NM_053135|Pcdhb10|93881|protocadherin beta 10
mm9_v1_chr6_+_139789965_139790178	1.81316	AIRE.p2	AB008792|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	NM_011084|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	AK054415|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	AK054271|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	AK054266|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	BC061142|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide
mm9_v1_chr18_+_14864659_14864697	1.81242	AIRE.p2	AK010717|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	NM_001163609|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	BC116990|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	BC116992|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	BC144771|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	BC144772|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8
mm9_v1_chr19_+_46781939_46782006	1.80713	AIRE.p2	AK006571|As3mt|57344|arsenic (+3 oxidation state) methyltransferase	AF166383|As3mt|57344|arsenic (+3 oxidation state) methyltransferase	AK011320|As3mt|57344|arsenic (+3 oxidation state) methyltransferase	BC145663|As3mt|57344|arsenic (+3 oxidation state) methyltransferase	AK002801|As3mt|57344|arsenic (+3 oxidation state) methyltransferase	BC013468|As3mt|57344|arsenic (+3 oxidation state) methyltransferase
mm9_v1_chr2_-_122011924_122011924	1.80532	AIRE.p2	AK015195|Patl2|67578|protein associated with topoisomerase II homolog 2 (yeast)	NM_026251|Patl2|67578|protein associated with topoisomerase II homolog 2 (yeast)
mm9_v1_chr4_-_135543058_135543193	1.80384	AIRE.p2	BC052695|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene	AF400670|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene	AK050261|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene	NM_025411|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene	AK004208|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene
mm9_v1_chr16_-_4624877_4625001	1.80156	AIRE.p2	AB073618|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	BC024346|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	BC096419|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	AF349454|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	AK003227|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	AK008380|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	NM_025571|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)
mm9_v1_chr5_-_72978788_72978788	1.79773	AIRE.p2	AK084047|Gm5868|545758|predicted gene 5868	NM_001024147|Gm5868|545758|predicted gene 5868
mm9_v1_chr2_-_155127037_155127091	1.78637	AIRE.p2	BC013076|Pigu|228812|phosphatidylinositol glycan anchor biosynthesis, class U
mm9_v1_chr4_+_140257340_140257464	1.78615	AIRE.p2	NM_173867|Rcc2|108911|regulator of chromosome condensation 2	BC060624|Rcc2|108911|regulator of chromosome condensation 2	AK076040|Rcc2|108911|regulator of chromosome condensation 2	BC086666|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chrX_+_155970593_155970627	1.78464	AIRE.p2	AK044001|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene	NM_001033472|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene
mm9_v1_chr11_-_43239482_43239482	1.77489	AIRE.p2	AF069051|Pttg1|30939|pituitary tumor-transforming gene 1	AF071209|Pttg1|30939|pituitary tumor-transforming gene 1	NM_013917|Pttg1|30939|pituitary tumor-transforming gene 1
mm9_v1_chr6_+_134874663_134874674	1.77037	AIRE.p2	AK154276|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	AK169586|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B
mm9_v1_chr5_-_113739711_113739807	1.76706	AIRE.p2	BC138049|Sgsm1|52850|small G protein signaling modulator 1	BC138050|Sgsm1|52850|small G protein signaling modulator 1	AK053555|Sgsm1|52850|small G protein signaling modulator 1	AK044716|Sgsm1|52850|small G protein signaling modulator 1	AK170021|Sgsm1|52850|small G protein signaling modulator 1	NM_001162965|Sgsm1|52850|small G protein signaling modulator 1	NM_172718|Sgsm1|52850|small G protein signaling modulator 1
mm9_v1_chr1_+_87804881_87804999	1.76642	AIRE.p2	AK195066|Itm2c|64294|integral membrane protein 2C	AK181068|Itm2c|64294|integral membrane protein 2C	AK184077|Itm2c|64294|integral membrane protein 2C	AK184543|Itm2c|64294|integral membrane protein 2C	AK184789|Itm2c|64294|integral membrane protein 2C	AK185815|Itm2c|64294|integral membrane protein 2C	AK187837|Itm2c|64294|integral membrane protein 2C	AK202316|Itm2c|64294|integral membrane protein 2C	AK208625|Itm2c|64294|integral membrane protein 2C	AK210908|Itm2c|64294|integral membrane protein 2C	AK214441|Itm2c|64294|integral membrane protein 2C	AK214627|Itm2c|64294|integral membrane protein 2C	AK188840|Itm2c|64294|integral membrane protein 2C	AK215527|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr8_-_74090499_74090547	1.76637	AIRE.p2	BC021911|Nxnl1|234404|nucleoredoxin-like 1	BC017153|Nxnl1|234404|nucleoredoxin-like 1	NM_145598|Nxnl1|234404|nucleoredoxin-like 1
mm9_v1_chr14_-_53110720_53110720	1.7568	AIRE.p2	BC119163|Olfr1507|57269|olfactory receptor 1507	BC119165|Olfr1507|57269|olfactory receptor 1507	NM_020512|Olfr1507|57269|olfactory receptor 1507
mm9_v1_chr2_-_180436533_180436806	1.75099	AIRE.p2	BC029110|Dido1|23856|death inducer-obliterator 1	AJ238332|Dido1|23856|death inducer-obliterator 1	AY425951|Dido1|23856|death inducer-obliterator 1	AY425952|Dido1|23856|death inducer-obliterator 1	AK044919|Dido1|23856|death inducer-obliterator 1	AK083334|Dido1|23856|death inducer-obliterator 1	AK042474|Dido1|23856|death inducer-obliterator 1	NM_011805|Dido1|23856|death inducer-obliterator 1	NM_175551|Dido1|23856|death inducer-obliterator 1	AK014422|Dido1|23856|death inducer-obliterator 1
mm9_v1_chr2_+_127034072_127034128	1.74773	AIRE.p2	AK081920|Snrnp200|320632|small nuclear ribonucleoprotein 200 (U5)	AK149291|Snrnp200|320632|small nuclear ribonucleoprotein 200 (U5)
mm9_v1_chr10_-_84590718_84590771	1.73844	AIRE.p2	BC046619|Mterfd3|74238|MTERF domain containing 3	AK047778|Mterfd3|74238|MTERF domain containing 3	AK039816|Mterfd3|74238|MTERF domain containing 3	NM_028832|Mterfd3|74238|MTERF domain containing 3
mm9_v1_chr17_+_31814873_31814975	1.73769	AIRE.p2	AK143463|Cryaa|12954|crystallin, alpha A	BC085170|Cryaa|12954|crystallin, alpha A	BC085172|Cryaa|12954|crystallin, alpha A	NM_013501|Cryaa|12954|crystallin, alpha A	AJ310308|Cryaa|12954|crystallin, alpha A	BC092385|Cryaa|12954|crystallin, alpha A	J00376|Cryaa|12954|crystallin, alpha A
mm9_v1_chr9_+_106091656_106091698	1.73756	AIRE.p2	BC054453|Wdr82|77305|WD repeat domain containing 82	BC112907|Wdr82|77305|WD repeat domain containing 82	BC044669|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr18_-_77870871_77870990	1.73361	AIRE.p2	AK009215|2310007O11Rik|74177|RIKEN cDNA 2310007O11 gene
mm9_v1_chr2_-_121206675_121206675	1.73257	AIRE.p2	AF375593|Strc|140476|stereocilin	NM_080459|Strc|140476|stereocilin
mm9_v1_chr4_+_155387803_155387982	1.72874	AIRE.p2	NM_011659|Tnfrsf4|22163|tumor necrosis factor receptor superfamily, member 4	BC139239|Tnfrsf4|22163|tumor necrosis factor receptor superfamily, member 4	BC139266|Tnfrsf4|22163|tumor necrosis factor receptor superfamily, member 4	BC065782|Tnfrsf4|22163|tumor necrosis factor receptor superfamily, member 4	Z21674|Tnfrsf4|22163|tumor necrosis factor receptor superfamily, member 4
mm9_v1_chr13_-_101603253_101603421	1.72206	AIRE.p2	AF461761|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	BC033452|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	AK090176|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	AK088004|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	AK051183|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	NM_022885|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5
mm9_v1_chr2_+_130230994_130231035	1.72172	AIRE.p2	NM_029375|1700020A23Rik|75656|RIKEN cDNA 1700020A23 gene	BC049710|1700020A23Rik|75656|RIKEN cDNA 1700020A23 gene	NM_001163483|1700020A23Rik|75656|RIKEN cDNA 1700020A23 gene	BC137914|1700020A23Rik|75656|RIKEN cDNA 1700020A23 gene	BC137915|1700020A23Rik|75656|RIKEN cDNA 1700020A23 gene
mm9_v1_chr2_+_17976897_17976897	1.71322	AIRE.p2	BC070475|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	NM_010804|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm9_v1_chr1_+_65357830_65357830	1.71031	AIRE.p2	AK045576|Pth2r|213527|parathyroid hormone 2 receptor	NM_139270|Pth2r|213527|parathyroid hormone 2 receptor
mm9_v1_chr14_-_51363998_51363998	1.70939	AIRE.p2	NM_020288|Olfr749|56858|olfactory receptor 749
mm9_v1_chr2_+_122090555_122090603	1.70656	AIRE.p2	AK216108|Sord|20322|sorbitol dehydrogenase
mm9_v1_chr4_-_61335031_61335133	1.7065	AIRE.p2	EU882231|Mup10|100039008|major urinary protein 10	AJ309921|Mup10|100039008|major urinary protein 10	EU882232|Mup19|100189605|major urinary protein 19	BC012221|Mup1|17840|major urinary protein 1	BC013649|Mup1|17840|major urinary protein 1	BC059097|Mup2|17841|major urinary protein 2	BC099597|Mup1|17840|major urinary protein 1	BC055353|LOC100048884|100048884|novel member of the major urinary protein (Mup) gene family	BC106092|Mup1|17840|major urinary protein 1	BC037152|Mup1|17840|major urinary protein 1	BC091775|Mup1|17840|major urinary protein 1	M16356|Mup2|17841|major urinary protein 2	M28649|Mup1|17840|major urinary protein 1	BC012259|Mup2|17841|major urinary protein 2	AK013259|Mup19|100189605|major urinary protein 19
mm9_v1_chr18_-_46397319_46397437	1.70351	AIRE.p2	AK131923|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	AK077685|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit
mm9_v1_chr9_+_88734001_88734001	1.70136	AIRE.p2	NM_001177858|Trim43c|666731|tripartite motif-containing 43C
mm9_v1_chr9_-_112090150_112090479	1.69714	AIRE.p2	BC128376|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AF324451|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_033264|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK159004|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK002950|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	BC027107|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK160860|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177615|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177620|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_028755|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chr2_+_172805342_172805379	1.693	AIRE.p2	AF126400|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	AF163053|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	AF163054|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	NM_001083959|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	NM_001083960|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	NM_012046|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	AF169386|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	AF165313|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	AF167439|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	AF173848|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	AF149309|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)
mm9_v1_chrX_-_93152223_93152253	1.69282	AIRE.p2	BC032218|Las1l|76130|LAS1-like (S. cerevisiae)	AK018059|Las1l|76130|LAS1-like (S. cerevisiae)	BC141155|Las1l|76130|LAS1-like (S. cerevisiae)
mm9_v1_chr12_+_113209769_113209769	1.69198	AIRE.p2	AB362563|Tdrd9|74691|tudor domain containing 9	NM_029056|Tdrd9|74691|tudor domain containing 9
mm9_v1_chr18_+_13165498_13165545	1.69061	AIRE.p2	AF358859|Hrh4|225192|histamine receptor H4	NM_153087|Hrh4|225192|histamine receptor H4	BC111862|Hrh4|225192|histamine receptor H4	EU660535|Hrh4|225192|histamine receptor H4	EU660534|Hrh4|225192|histamine receptor H4
mm9_v1_chr9_-_107673318_107673340	1.68928	AIRE.p2	AK134183|Rbm5|83486|RNA binding motif protein 5	AK146880|Rbm5|83486|RNA binding motif protein 5	NM_148930|Rbm5|83486|RNA binding motif protein 5
mm9_v1_chr16_+_43619057_43619100	1.68863	AIRE.p2	AK178854|Zbtb20|56490|zinc finger and BTB domain containing 20	AK013698|Zbtb20|56490|zinc finger and BTB domain containing 20	AK036125|Zbtb20|56490|zinc finger and BTB domain containing 20
mm9_v1_chr16_+_57152994_57153228	1.68727	AIRE.p2	BC025450|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK011763|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm9_v1_chr6_-_70868896_70868915	1.68649	AIRE.p2	BC049736|1700011F03Rik|74221|RIKEN cDNA 1700011F03 gene	AK005862|1700011F03Rik|74221|RIKEN cDNA 1700011F03 gene	NM_028825|1700011F03Rik|74221|RIKEN cDNA 1700011F03 gene
mm9_v1_chr16_+_13986691_13986753	1.67277	AIRE.p2	AK049997|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK076136|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK139470|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK136859|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	NM_144518|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK019307|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	BC022741|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK035868|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene
mm9_v1_chr14_-_51405130_51405204	1.67211	AIRE.p2	BC003272|Ttc5|219022|tetratricopeptide repeat domain 5	BC025610|Ttc5|219022|tetratricopeptide repeat domain 5	AK077874|Ttc5|219022|tetratricopeptide repeat domain 5	BC092074|Ttc5|219022|tetratricopeptide repeat domain 5	AK081214|Ttc5|219022|tetratricopeptide repeat domain 5	AK161279|Ttc5|219022|tetratricopeptide repeat domain 5	AK157777|Ttc5|219022|tetratricopeptide repeat domain 5	AK133953|Ttc5|219022|tetratricopeptide repeat domain 5	BC069946|Ttc5|219022|tetratricopeptide repeat domain 5	AK044781|Ttc5|219022|tetratricopeptide repeat domain 5	NM_001080949|Ttc5|219022|tetratricopeptide repeat domain 5	NM_177625|Ttc5|219022|tetratricopeptide repeat domain 5
mm9_v1_chr18_+_42435006_42435038	1.66792	AIRE.p2	NM_172626|Rbm27|225432|RNA binding motif protein 27	AY461716|Rbm27|225432|RNA binding motif protein 27
mm9_v1_chr3_-_146278561_146278561	1.66569	AIRE.p2	AK079224|Dnase2b|56629|deoxyribonuclease II beta	NM_019957|Dnase2b|56629|deoxyribonuclease II beta
mm9_v1_chr13_+_36209279_36209279	1.66344	AIRE.p2	NM_001039189|Fars2|69955|phenylalanine-tRNA synthetase 2 (mitochondrial)	NM_024274|Fars2|69955|phenylalanine-tRNA synthetase 2 (mitochondrial)
mm9_v1_chr4_-_143998305_143998366	1.66305	AIRE.p2	AK167683|Pramef12|77632|PRAME family member 12	BC066168|Pramef12|77632|PRAME family member 12	AK019795|Pramef12|77632|PRAME family member 12	NM_029948|Pramef12|77632|PRAME family member 12
mm9_v1_chr16_-_64786146_64786199	1.65944	AIRE.p2	BC068018|Zfp654|72020|zinc finger protein 654	NM_028059|Zfp654|72020|zinc finger protein 654	AK005508|Zfp654|72020|zinc finger protein 654
mm9_v1_chrX_+_154137193_154137229	1.65786	AIRE.p2	BC132358|Smpx|66106|small muscle protein, X-linked	BC138801|Smpx|66106|small muscle protein, X-linked
mm9_v1_chrX_-_146747906_146747906	1.6429	AIRE.p2	NM_001101501|Gm15104|333588|predicted gene 15104
mm9_v1_chr19_+_46781921_46781932	1.64248	AIRE.p2	NM_020577|As3mt|57344|arsenic (+3 oxidation state) methyltransferase
mm9_v1_chr9_-_123169866_123169957	1.64213	AIRE.p2	AK009669|Tmem158|72309|transmembrane protein 158	NM_001002267|Tmem158|72309|transmembrane protein 158
mm9_v1_chr1_-_58752798_58752832	1.64105	AIRE.p2	AK077190|Als2cr12|108812|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 (human)	AK016678|Als2cr12|108812|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 (human)	AK133373|Als2cr12|108812|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 (human)	NM_175370|Als2cr12|108812|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 (human)
mm9_v1_chr13_-_21842373_21842421	1.63495	AIRE.p2	BC119612|Hist1h4k|319160|histone cluster 1, H4k	NM_178211|Hist1h4k|319160|histone cluster 1, H4k	BC096767|Hist1h4k|319160|histone cluster 1, H4k	AK139521|Hist1h4k|319160|histone cluster 1, H4k	BC117010|Hist1h4k|319160|histone cluster 1, H4k	BC117012|Hist1h4k|319160|histone cluster 1, H4k
mm9_v1_chrX_+_13209894_13209986	1.63444	AIRE.p2	DQ103766|Gpr34|23890|G protein-coupled receptor 34	DQ103767|Gpr34|23890|G protein-coupled receptor 34	NM_011823|Gpr34|23890|G protein-coupled receptor 34	AK033675|Gpr34|23890|G protein-coupled receptor 34	AK039528|Gpr34|23890|G protein-coupled receptor 34	AK039041|Gpr34|23890|G protein-coupled receptor 34	AK140507|Gpr34|23890|G protein-coupled receptor 34
mm9_v1_chr11_-_46202942_46203016	1.63365	AIRE.p2	BC128374|Itk|16428|IL2-inducible T-cell kinase	BC128375|Itk|16428|IL2-inducible T-cell kinase	D14042|Itk|16428|IL2-inducible T-cell kinase	BC028478|Itk|16428|IL2-inducible T-cell kinase	AK020772|Itk|16428|IL2-inducible T-cell kinase	AK079693|Itk|16428|IL2-inducible T-cell kinase	AK153613|Itk|16428|IL2-inducible T-cell kinase	AK153692|Itk|16428|IL2-inducible T-cell kinase	L05631|Itk|16428|IL2-inducible T-cell kinase	L10628|Itk|16428|IL2-inducible T-cell kinase	AK083380|Itk|16428|IL2-inducible T-cell kinase	L00619|Itk|16428|IL2-inducible T-cell kinase	NM_010583|Itk|16428|IL2-inducible T-cell kinase
mm9_v1_chr1_-_58480910_58480931	1.63203	AIRE.p2	NM_001042634|Clk1|12747|CDC-like kinase 1
mm9_v1_chr2_-_30033944_30034014	1.62901	AIRE.p2	AK044983|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK036945|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK147162|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK046148|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	NM_172660|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed
mm9_v1_chr7_+_133960398_133960398	1.62683	AIRE.p2	NM_026884|Fam57b|68952|family with sequence similarity 57, member B
mm9_v1_chr5_-_122110456_122110520	1.62385	AIRE.p2	BC027825|Acad10|71985|acyl-Coenzyme A dehydrogenase family, member 10	AK050332|Acad10|71985|acyl-Coenzyme A dehydrogenase family, member 10	AK148195|Acad10|71985|acyl-Coenzyme A dehydrogenase family, member 10	NM_028037|Acad10|71985|acyl-Coenzyme A dehydrogenase family, member 10
mm9_v1_chr14_+_26761977_26762068	1.62306	AIRE.p2	DQ224405|Cphx|105594|cytoplasmic polyadenylated homeobox	AK049114|Cphx|105594|cytoplasmic polyadenylated homeobox	NM_175342|Cphx|105594|cytoplasmic polyadenylated homeobox	BC132038|Cphx|105594|cytoplasmic polyadenylated homeobox	BC132040|Cphx|105594|cytoplasmic polyadenylated homeobox	BC095973|Cphx|105594|cytoplasmic polyadenylated homeobox
mm9_v1_chr14_+_26901730_26901821	1.62306	AIRE.p2	DQ224405|Cphx|105594|cytoplasmic polyadenylated homeobox	AK049114|Cphx|105594|cytoplasmic polyadenylated homeobox	NM_175342|Cphx|105594|cytoplasmic polyadenylated homeobox	BC132038|Cphx|105594|cytoplasmic polyadenylated homeobox	BC132040|Cphx|105594|cytoplasmic polyadenylated homeobox	BC095973|Cphx|105594|cytoplasmic polyadenylated homeobox
mm9_v1_chr14_+_27041341_27041432	1.62306	AIRE.p2	DQ224405|Cphx|105594|cytoplasmic polyadenylated homeobox	AK049114|Cphx|105594|cytoplasmic polyadenylated homeobox	NM_175342|Cphx|105594|cytoplasmic polyadenylated homeobox	BC132038|Cphx|105594|cytoplasmic polyadenylated homeobox	BC132040|Cphx|105594|cytoplasmic polyadenylated homeobox	BC095973|Cphx|105594|cytoplasmic polyadenylated homeobox
mm9_v1_chr11_-_43650152_43650304	1.62186	AIRE.p2	Y12738|Adra1b|11548|adrenergic receptor, alpha 1b
mm9_v1_chr4_+_130469187_130469272	1.61673	AIRE.p2	AK171481|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK089432|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171269|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171285|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171575|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK172486|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171057|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171280|Laptm5|16792|lysosomal-associated protein transmembrane 5	U51239|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171571|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK170690|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171250|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171053|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK089508|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171149|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK170867|Laptm5|16792|lysosomal-associated protein transmembrane 5	AF364050|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171270|Laptm5|16792|lysosomal-associated protein transmembrane 5	U29539|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK031802|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK050633|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK153877|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK163146|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171105|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171172|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171213|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171244|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171547|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK172306|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK172707|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK089535|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171116|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171193|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171236|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK150299|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK152918|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK155744|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171274|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171562|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK170438|Laptm5|16792|lysosomal-associated protein transmembrane 5	NM_010686|Laptm5|16792|lysosomal-associated protein transmembrane 5	BC020993|Laptm5|16792|lysosomal-associated protein transmembrane 5	BC055057|Laptm5|16792|lysosomal-associated protein transmembrane 5	BC114403|Laptm5|16792|lysosomal-associated protein transmembrane 5
mm9_v1_chr9_+_75862772_75862821	1.61601	AIRE.p2	BC037381|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	NM_173731|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	AK141622|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	AK164164|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1
mm9_v1_chr7_-_16457733_16457733	1.61152	AIRE.p2	AK139691|Crx|12951|cone-rod homeobox containing gene	NM_001113330|Crx|12951|cone-rod homeobox containing gene
mm9_v1_chr7_-_113358823_113358853	1.6112	AIRE.p2	AY167973|Gvin1|74558|GTPase, very large interferon inducible 1	AY167974|Gvin1|74558|GTPase, very large interferon inducible 1	AK036418|Gvin1|74558|GTPase, very large interferon inducible 1	AY167972|Gvin1|74558|GTPase, very large interferon inducible 1	AK154796|Gvin1|74558|GTPase, very large interferon inducible 1	NM_001039160|Gvin1|74558|GTPase, very large interferon inducible 1	NM_029000|Gvin1|74558|GTPase, very large interferon inducible 1
mm9_v1_chr7_-_113102453_113102483	1.6112	AIRE.p2	AY167973|Gvin1|74558|GTPase, very large interferon inducible 1	AY167974|Gvin1|74558|GTPase, very large interferon inducible 1	AK036418|Gvin1|74558|GTPase, very large interferon inducible 1	AY167972|Gvin1|74558|GTPase, very large interferon inducible 1	AK154796|Gvin1|74558|GTPase, very large interferon inducible 1	NM_001039160|Gvin1|74558|GTPase, very large interferon inducible 1	NM_029000|Gvin1|74558|GTPase, very large interferon inducible 1
mm9_v1_chr12_+_16817770_16817770	1.61082	AIRE.p2	NM_033270|E2f6|50496|E2F transcription factor 6
mm9_v1_chr8_+_109555200_109555247	1.60985	AIRE.p2	AK159117|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK047821|Vps4a|116733|vacuolar protein sorting 4a (yeast)	BC018368|Vps4a|116733|vacuolar protein sorting 4a (yeast)	NM_126165|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK169949|Vps4a|116733|vacuolar protein sorting 4a (yeast)
mm9_v1_chr1_+_137914635_137914732	1.60956	AIRE.p2	NM_001160146|Tmem9|66241|transmembrane protein 9
mm9_v1_chr9_+_96159666_96159703	1.60499	AIRE.p2	NM_001184710|Tfdp2|211586|transcription factor Dp 2	NM_001184711|Tfdp2|211586|transcription factor Dp 2	AK158829|Tfdp2|211586|transcription factor Dp 2	BC092230|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr6_+_136467388_136467391	1.6044	AIRE.p2	BC060246|Atf7ip|54343|activating transcription factor 7 interacting protein
mm9_v1_chr1_+_44204752_44204764	1.60417	AIRE.p2	AK140825|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5	AK137563|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5	BC141070|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5	AK038822|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5
mm9_v1_chr11_-_86171026_86171057	1.60137	AIRE.p2	NM_001080931|Med13|327987|mediator complex subunit 13
mm9_v1_chr1_-_173465423_173465424	1.59744	AIRE.p2	AB016496|Itln1|16429|intelectin 1 (galactofuranose binding)	NM_010584|Itln1|16429|intelectin 1 (galactofuranose binding)	AK007447|Itln1|16429|intelectin 1 (galactofuranose binding)
mm9_v1_chr6_+_120413200_120413305	1.59642	AIRE.p2	NM_008359|Il17ra|16172|interleukin 17 receptor A	AK036587|Il17ra|16172|interleukin 17 receptor A	AK080226|Il17ra|16172|interleukin 17 receptor A
mm9_v1_chr16_+_32914183_32914232	1.59153	AIRE.p2	AK155550|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	NM_001081255|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	AK076529|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC151058|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC157924|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC172144|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	AK133482|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3
mm9_v1_chr1_+_129702056_129702170	1.58818	AIRE.p2	AK033697|Ccnt2|72949|cyclin T2
mm9_v1_chr11_-_95973271_95973275	1.5828	AIRE.p2	AK166939|Calcoco2|76815|calcium binding and coiled-coil domain 2	AF490344|Calcoco2|76815|calcium binding and coiled-coil domain 2	AK010816|Calcoco2|76815|calcium binding and coiled-coil domain 2	AK145542|Calcoco2|76815|calcium binding and coiled-coil domain 2	AK166710|Calcoco2|76815|calcium binding and coiled-coil domain 2	AK166756|Calcoco2|76815|calcium binding and coiled-coil domain 2	AK167009|Calcoco2|76815|calcium binding and coiled-coil domain 2	AK167172|Calcoco2|76815|calcium binding and coiled-coil domain 2	AK167291|Calcoco2|76815|calcium binding and coiled-coil domain 2	NM_001100177|Calcoco2|76815|calcium binding and coiled-coil domain 2	NM_029755|Calcoco2|76815|calcium binding and coiled-coil domain 2
mm9_v1_chr13_+_24506990_24507004	1.58047	AIRE.p2	AK166486|Cmah|12763|cytidine monophospho-N-acetylneuraminic acid hydroxylase	AK145199|Cmah|12763|cytidine monophospho-N-acetylneuraminic acid hydroxylase	NM_007717|Cmah|12763|cytidine monophospho-N-acetylneuraminic acid hydroxylase	BC055079|Cmah|12763|cytidine monophospho-N-acetylneuraminic acid hydroxylase
mm9_v1_chr11_+_80196766_80196898	1.57748	AIRE.p2	AK087885|Zfp207|22680|zinc finger protein 207	NM_001130169|Zfp207|22680|zinc finger protein 207	NM_001130170|Zfp207|22680|zinc finger protein 207	NM_001130171|Zfp207|22680|zinc finger protein 207	NM_011751|Zfp207|22680|zinc finger protein 207	AK140139|Zfp207|22680|zinc finger protein 207	AK146787|Zfp207|22680|zinc finger protein 207	AK159683|Zfp207|22680|zinc finger protein 207	AK033497|Zfp207|22680|zinc finger protein 207	BC003715|Zfp207|22680|zinc finger protein 207	AB013357|Zfp207|22680|zinc finger protein 207	AB032196|Zfp207|22680|zinc finger protein 207
mm9_v1_chr17_-_37095372_37095414	1.57178	AIRE.p2	AK003714|Znrd1|66136|zinc ribbon domain containing, 1	NM_023162|Znrd1|66136|zinc ribbon domain containing, 1	BC043016|Znrd1|66136|zinc ribbon domain containing, 1
mm9_v1_chrY_+_155091_155155	1.57119	AIRE.p2	AF150963|Ube1y1|22202|ubiquitin-activating enzyme E1, Chr Y 1	AK030031|Ube1y1|22202|ubiquitin-activating enzyme E1, Chr Y 1	NM_011667|Ube1y1|22202|ubiquitin-activating enzyme E1, Chr Y 1
mm9_v1_chr7_-_25084361_25084383	1.56629	AIRE.p2	AK149960|Zfp61|22719|zinc finger protein 61	AK148158|Zfp61|22719|zinc finger protein 61
mm9_v1_chr2_+_32583221_32583245	1.56235	AIRE.p2	AK042709|Sh2d3c|27387|SH2 domain containing 3C	AK085885|Sh2d3c|27387|SH2 domain containing 3C	AK135231|Sh2d3c|27387|SH2 domain containing 3C	AB030442|Sh2d3c|27387|SH2 domain containing 3C
mm9_v1_chr19_-_34240392_34240542	1.56147	AIRE.p2	BC003460|Ankrd22|52024|ankyrin repeat domain 22	AK017408|Ankrd22|52024|ankyrin repeat domain 22	AK037242|Ankrd22|52024|ankyrin repeat domain 22	AK017360|Ankrd22|52024|ankyrin repeat domain 22	NM_024204|Ankrd22|52024|ankyrin repeat domain 22	AK012869|Ankrd22|52024|ankyrin repeat domain 22
mm9_v1_chr4_+_138012860_138012969	1.55497	AIRE.p2	AK021100|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm9_v1_chr10_+_128143313_128143342	1.55496	AIRE.p2	AK012808|Pmel|20431|premelanosome protein	AK131956|Pmel|20431|premelanosome protein	NM_021882|Pmel|20431|premelanosome protein	BC075667|Pmel|20431|premelanosome protein	BC082555|Pmel|20431|premelanosome protein	U14133|Pmel|20431|premelanosome protein
mm9_v1_chr18_-_35097374_35097402	1.55233	AIRE.p2	AK028123|Hspa9|15526|heat shock protein 9
mm9_v1_chr7_+_63049505_63049618	1.55226	AIRE.p2	NM_146190|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK051326|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK044887|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK160939|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK032031|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK086158|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK152033|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK153331|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK161681|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK151454|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK153357|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK044444|Tubgcp5|233276|tubulin, gamma complex associated protein 5
mm9_v1_chr10_+_42580317_42580598	1.54963	AIRE.p2	NM_172938|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AF397911|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AK034171|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	BC043310|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AK047972|Scml4|268297|sex comb on midleg-like 4 (Drosophila)
mm9_v1_chr13_+_27290771_27290771	1.54914	AIRE.p2	AK014980|Prl3c1|27372|prolactin family 3, subfamily c, member 1	NM_001163218|Prl3c1|27372|prolactin family 3, subfamily c, member 1
mm9_v1_chr17_-_37095420_37095443	1.54898	AIRE.p2	AK005976|Znrd1|66136|zinc ribbon domain containing, 1	AK019152|Znrd1|66136|zinc ribbon domain containing, 1
mm9_v1_chrX_+_156278399_156278494	1.5488	AIRE.p2	AK028299|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_001135728|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr11_+_110260435_110260577	1.54354	AIRE.p2	AK043482|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK086722|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK138757|Map2k6|26399|mitogen-activated protein kinase kinase 6	NM_011943|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK077712|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK140289|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK141708|Map2k6|26399|mitogen-activated protein kinase kinase 6	BC075652|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK162671|Map2k6|26399|mitogen-activated protein kinase kinase 6	X97052|Map2k6|26399|mitogen-activated protein kinase kinase 6
mm9_v1_chr3_-_89856250_89856452	1.54311	AIRE.p2	AK030218|Ubap2l|74383|ubiquitin associated protein 2-like	AK031934|Ubap2l|74383|ubiquitin associated protein 2-like	BC023906|Ubap2l|74383|ubiquitin associated protein 2-like	BC029075|Ubap2l|74383|ubiquitin associated protein 2-like	AK088702|Ubap2l|74383|ubiquitin associated protein 2-like	AF276967|Ubap2l|74383|ubiquitin associated protein 2-like	AK048286|Ubap2l|74383|ubiquitin associated protein 2-like	AK079895|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165983|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165985|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165987|Ubap2l|74383|ubiquitin associated protein 2-like	NM_028475|Ubap2l|74383|ubiquitin associated protein 2-like	NM_153489|Ubap2l|74383|ubiquitin associated protein 2-like	AK014274|Ubap2l|74383|ubiquitin associated protein 2-like	AK152135|Ubap2l|74383|ubiquitin associated protein 2-like	AK040551|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165984|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165986|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165988|Ubap2l|74383|ubiquitin associated protein 2-like
mm9_v1_chr4_-_107356766_107356766	1.54281	AIRE.p2	AF542048|Dmrtb1|56296|DMRT-like family B with proline-rich C-terminal, 1	NM_019872|Dmrtb1|56296|DMRT-like family B with proline-rich C-terminal, 1
mm9_v1_chr3_+_154756397_154756433	1.52958	AIRE.p2	AK087661|Lrriq3|74435|leucine-rich repeats and IQ motif containing 3	NM_028938|Lrriq3|74435|leucine-rich repeats and IQ motif containing 3	AK132656|Lrriq3|74435|leucine-rich repeats and IQ motif containing 3
mm9_v1_chr7_+_134380580_134380598	1.52636	AIRE.p2	AK218462|Zfp553|233887|zinc finger protein 553
mm9_v1_chr17_-_26206487_26206493	1.52321	AIRE.p2	AK163013|Rab11fip3|215445|RAB11 family interacting protein 3 (class II)
mm9_v1_chr14_-_22567834_22567843	1.51744	AIRE.p2	AY674052|Dusp13|27389|dual specificity phosphatase 13	NM_001007268|Dusp13|27389|dual specificity phosphatase 13
mm9_v1_chr9_+_7692089_7692096	1.51671	AIRE.p2	L36244|Mmp7|17393|matrix metallopeptidase 7	AK144515|Mmp7|17393|matrix metallopeptidase 7
mm9_v1_chr14_+_55551531_55551607	1.51559	AIRE.p2	BC120568|Il25|140806|interleukin 25	BC125524|Il25|140806|interleukin 25	BC144962|Il25|140806|interleukin 25	NM_080729|Il25|140806|interleukin 25	AF458060|Il25|140806|interleukin 25
mm9_v1_chr13_-_61037960_61037985	1.51544	AIRE.p2	NM_007796|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha
mm9_v1_chr2_-_140215417_140215459	1.51455	AIRE.p2	BC150948|Sel1l2|228684|sel-1 suppressor of lin-12-like 2 (C. elegans)	AK131753|Sel1l2|228684|sel-1 suppressor of lin-12-like 2 (C. elegans)	AK132650|Sel1l2|228684|sel-1 suppressor of lin-12-like 2 (C. elegans)	NM_001033296|Sel1l2|228684|sel-1 suppressor of lin-12-like 2 (C. elegans)	AK016809|Sel1l2|228684|sel-1 suppressor of lin-12-like 2 (C. elegans)
mm9_v1_chr10_+_62849310_62849422	1.51348	AIRE.p2	NM_013888|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	AK032207|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	AF132906|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	BC013501|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	BC071211|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12
mm9_v1_chrX_-_159402493_159402530	1.51209	AIRE.p2	AF136283|S100g|12309|S100 calcium binding protein G	AF028071|S100g|12309|S100 calcium binding protein G	AK146558|S100g|12309|S100 calcium binding protein G	AF293948|S100g|12309|S100 calcium binding protein G	AF293949|S100g|12309|S100 calcium binding protein G	NM_009789|S100g|12309|S100 calcium binding protein G
mm9_v1_chr10_-_58904445_58904526	1.50486	AIRE.p2	AY180915|Oit3|18302|oncoprotein induced transcript 3	AF356506|Oit3|18302|oncoprotein induced transcript 3	AK050081|Oit3|18302|oncoprotein induced transcript 3	AK040570|Oit3|18302|oncoprotein induced transcript 3	NM_010959|Oit3|18302|oncoprotein induced transcript 3
mm9_v1_chrX_-_45944937_45944938	1.50226	AIRE.p2	BC051397|Zfp280c|208968|zinc finger protein 280C	NM_001166650|Zfp280c|208968|zinc finger protein 280C	BC028839|Zfp280c|208968|zinc finger protein 280C
mm9_v1_chr5_+_77445047_77445068	1.49581	AIRE.p2	BC053422|1700023E05Rik|71868|RIKEN cDNA 1700023E05 gene	NM_027970|1700023E05Rik|71868|RIKEN cDNA 1700023E05 gene	AK006270|1700023E05Rik|71868|RIKEN cDNA 1700023E05 gene
mm9_v1_chr2_-_164082375_164082378	1.49492	AIRE.p2	AK035235|Svs3b|329557|seminal vesicle secretory protein 3B	NM_173377|Svs3b|329557|seminal vesicle secretory protein 3B
mm9_v1_chr11_-_53520811_53520848	1.48425	AIRE.p2	BC002033|Rad50|19360|RAD50 homolog (S. cerevisiae)	AK018001|Rad50|19360|RAD50 homolog (S. cerevisiae)	AK037641|Rad50|19360|RAD50 homolog (S. cerevisiae)	NM_009012|Rad50|19360|RAD50 homolog (S. cerevisiae)
mm9_v1_chr5_+_113919352_113919613	1.48383	AIRE.p2	BC096526|Wscd2|320916|WSC domain containing 2	NM_177292|Wscd2|320916|WSC domain containing 2
mm9_v1_chr17_+_8118823_8118919	1.47494	AIRE.p2	NM_145968|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC030886|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC039780|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC150728|Tagap|72536|T-cell activation Rho GTPase-activating protein
mm9_v1_chr2_+_132516018_132516018	1.46751	AIRE.p2	BC100475|1110034G24Rik|73747|RIKEN cDNA 1110034G24 gene	NM_028637|1110034G24Rik|73747|RIKEN cDNA 1110034G24 gene
mm9_v1_chr13_+_33096472_33096539	1.46567	AIRE.p2	AK035624|Serpinb9|20723|serine (or cysteine) peptidase inhibitor, clade B, member 9	BC029900|Serpinb9|20723|serine (or cysteine) peptidase inhibitor, clade B, member 9	AK087785|Serpinb9|20723|serine (or cysteine) peptidase inhibitor, clade B, member 9	U96700|Serpinb9|20723|serine (or cysteine) peptidase inhibitor, clade B, member 9
mm9_v1_chr19_+_54003803_54003809	1.46266	AIRE.p2	AK050175|Pdcd4|18569|programmed cell death 4
mm9_v1_chr3_-_98367865_98367960	1.46252	AIRE.p2	NM_001111336|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	BC132402|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	BC013449|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	L16919|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	AK146749|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	NM_008294|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4
mm9_v1_chr10_+_111520409_111520427	1.45845	AIRE.p2	AK014846|Glipr1l2|67537|GLI pathogenesis-related 1 like 2	AK161292|Glipr1l2|67537|GLI pathogenesis-related 1 like 2	BC118017|Glipr1l2|67537|GLI pathogenesis-related 1 like 2	NM_026223|Glipr1l2|67537|GLI pathogenesis-related 1 like 2	AK015834|Glipr1l2|67537|GLI pathogenesis-related 1 like 2
mm9_v1_chr17_-_24580867_24580878	1.45625	AIRE.p2	AK178081|E4f1|13560|E4F transcription factor 1
mm9_v1_chr3_-_98314394_98314489	1.45413	AIRE.p2	NM_001111336|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	BC132402|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	BC013449|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	L16919|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	AK146749|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	NM_008294|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4
mm9_v1_chr7_+_4971977_4971977	1.44498	AIRE.p2	AK154737|Zfp865|319748|zinc finger protein 865	NM_001033383|Zfp865|319748|zinc finger protein 865
mm9_v1_chr11_-_68825972_68825998	1.44363	AIRE.p2	
mm9_v1_chr1_+_20720985_20720998	1.44317	AIRE.p2	AK040420|Il17a|16171|interleukin 17A	BC119303|Il17a|16171|interleukin 17A	BC119309|Il17a|16171|interleukin 17A	NM_010552|Il17a|16171|interleukin 17A	U43088|Il17a|16171|interleukin 17A
mm9_v1_chr11_-_42134548_42134554	1.43874	AIRE.p2	AK135145|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	AK137331|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	NM_001099641|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	NM_008068|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6
mm9_v1_chr8_-_3720642_3720662	1.43683	AIRE.p2	BC025069|Clec4g|75863|C-type lectin domain family 4, member g	AK079992|Clec4g|75863|C-type lectin domain family 4, member g	BC087963|Clec4g|75863|C-type lectin domain family 4, member g	NM_029465|Clec4g|75863|C-type lectin domain family 4, member g
mm9_v1_chr7_+_51052946_51053024	1.43527	AIRE.p2	D30785|Klk8|259277|kallikrein related-peptidase 8	NM_008940|Klk8|259277|kallikrein related-peptidase 8
mm9_v1_chr8_-_109620286_109620323	1.43454	AIRE.p2	AF003000|Terf2|21750|telomeric repeat binding factor 2
mm9_v1_chr6_-_131197295_131197381	1.43245	AIRE.p2	U10304|Klra2|16633|killer cell lectin-like receptor, subfamily A, member 2	AK017140|Klra2|16633|killer cell lectin-like receptor, subfamily A, member 2	BC064711|Klra2|16633|killer cell lectin-like receptor, subfamily A, member 2	NM_001170851|Klra2|16633|killer cell lectin-like receptor, subfamily A, member 2	NM_008462|Klra2|16633|killer cell lectin-like receptor, subfamily A, member 2
mm9_v1_chr8_-_13562404_13562447	1.43016	AIRE.p2	AK006340|1700029H14Rik|66501|RIKEN cDNA 1700029H14 gene	AK006493|1700029H14Rik|66501|RIKEN cDNA 1700029H14 gene	AK016674|1700029H14Rik|66501|RIKEN cDNA 1700029H14 gene	BC049575|1700029H14Rik|66501|RIKEN cDNA 1700029H14 gene	NM_001080781|1700029H14Rik|66501|RIKEN cDNA 1700029H14 gene	NM_025601|1700029H14Rik|66501|RIKEN cDNA 1700029H14 gene
mm9_v1_chr8_+_109417539_109417610	1.42756	AIRE.p2	NM_011574|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	BC068113|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK144455|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK146263|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK150862|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK168470|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK173318|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)
mm9_v1_chr15_-_8394462_8394663	1.42609	AIRE.p2	AJ627033|Nipbl|71175|Nipped-B homolog (Drosophila)	AJ640138|Nipbl|71175|Nipped-B homolog (Drosophila)	NM_027707|Nipbl|71175|Nipped-B homolog (Drosophila)	NM_201232|Nipbl|71175|Nipped-B homolog (Drosophila)
mm9_v1_chr9_+_88475873_88475994	1.42559	AIRE.p2	AK145647|Trim43a|547109|tripartite motif-containing 43A	NM_001034906|Trim43a|547109|tripartite motif-containing 43A	AK166678|Trim43a|547109|tripartite motif-containing 43A	BC141236|Trim43a|547109|tripartite motif-containing 43A
mm9_v1_chr10_+_41170163_41170242	1.42205	AIRE.p2	AK146986|Zbtb24|268294|zinc finger and BTB domain containing 24	AK154467|Zbtb24|268294|zinc finger and BTB domain containing 24	AY210402|Zbtb24|268294|zinc finger and BTB domain containing 24	BC050933|Zbtb24|268294|zinc finger and BTB domain containing 24	NM_153398|Zbtb24|268294|zinc finger and BTB domain containing 24	AK054097|Zbtb24|268294|zinc finger and BTB domain containing 24	AK169260|Zbtb24|268294|zinc finger and BTB domain containing 24	BC055367|Zbtb24|268294|zinc finger and BTB domain containing 24	AF263010|Zbtb24|268294|zinc finger and BTB domain containing 24
mm9_v1_chr10_-_75297615_75297625	1.42018	AIRE.p2	AK158939|Gstt2|14872|glutathione S-transferase, theta 2	NM_010361|Gstt2|14872|glutathione S-transferase, theta 2
mm9_v1_chr12_+_72456427_72456435	1.41997	AIRE.p2	
mm9_v1_chr5_-_38871369_38871544	1.41509	AIRE.p2	AF490463|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	AK037093|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	AK172234|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	AK156740|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	AF469480|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	NM_001102414|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	NM_001102415|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9
mm9_v1_chr12_-_86644527_86644534	1.40652	AIRE.p2	AK052182|Nek9|217718|NIMA (never in mitosis gene a)-related expressed kinase 9
mm9_v1_chr8_+_86239131_86239208	1.39651	AIRE.p2	AK146294|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK145927|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK150997|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK172448|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK012002|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK016960|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK149475|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK151395|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK152394|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK137114|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	BC020134|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK164289|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK168079|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK167890|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
mm9_v1_chr10_-_43621485_43621487	1.39456	AIRE.p2	AK170225|Qrsl1|76563|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
mm9_v1_chr9_+_107483603_107483637	1.38891	AIRE.p2	BC018457|Hyal3|109685|hyaluronoglucosaminidase 3	NM_178020|Hyal3|109685|hyaluronoglucosaminidase 3	AY048681|Hyal3|109685|hyaluronoglucosaminidase 3
mm9_v1_chr4_+_140258090_140258179	1.38801	AIRE.p2	AK186216|Rcc2|108911|regulator of chromosome condensation 2	AK129370|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr4_-_124359695_124359773	1.38095	AIRE.p2	AK008801|Utp11l|67205|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)
mm9_v1_chr6_-_128476708_128476738	1.37944	AIRE.p2	M93264|Pzp|11287|pregnancy zone protein	NM_007376|Pzp|11287|pregnancy zone protein
mm9_v1_chr9_-_57110250_57110427	1.37725	AIRE.p2	BC150963|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	BC150965|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	BC118527|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK006055|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK145074|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK155015|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK029230|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK031730|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK044396|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK155487|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK165963|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	NM_028820|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK080676|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK169617|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene
mm9_v1_chr1_-_39707919_39708026	1.37429	AIRE.p2	BC116790|Creg2|263764|cellular repressor of E1A-stimulated genes 2	BC116792|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK044192|Creg2|263764|cellular repressor of E1A-stimulated genes 2	NM_170597|Creg2|263764|cellular repressor of E1A-stimulated genes 2
mm9_v1_chr7_-_140974399_140974445	1.36584	AIRE.p2	AK028910|Dhx32|101437|DEAH (Asp-Glu-Ala-His) box polypeptide 32
mm9_v1_chr5_+_25021884_25021967	1.36492	AIRE.p2	AK133375|Cct8l1|242891|chaperonin containing TCP1, subunit 8 (theta)-like 1	NM_198621|Cct8l1|242891|chaperonin containing TCP1, subunit 8 (theta)-like 1	BC050797|Cct8l1|242891|chaperonin containing TCP1, subunit 8 (theta)-like 1
mm9_v1_chr15_+_8119063_8119105	1.36219	AIRE.p2	AK028897|2410089E03Rik|73692|RIKEN cDNA 2410089E03 gene	NM_001162906|2410089E03Rik|73692|RIKEN cDNA 2410089E03 gene
mm9_v1_chrX_+_7184223_7184271	1.35088	AIRE.p2	BC057653|Cacna1f|54652|calcium channel, voltage-dependent, alpha 1F subunit	NM_019582|Cacna1f|54652|calcium channel, voltage-dependent, alpha 1F subunit	AF192497|Cacna1f|54652|calcium channel, voltage-dependent, alpha 1F subunit	AK044695|Cacna1f|54652|calcium channel, voltage-dependent, alpha 1F subunit	BC051413|Cacna1f|54652|calcium channel, voltage-dependent, alpha 1F subunit	BC043482|Cacna1f|54652|calcium channel, voltage-dependent, alpha 1F subunit	AJ579852|Cacna1f|54652|calcium channel, voltage-dependent, alpha 1F subunit
mm9_v1_chr15_+_99125666_99125690	1.3503	AIRE.p2	BC058389|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	BC082994|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	AK140075|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	AK164947|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)
mm9_v1_chr7_-_97052120_97052138	1.34507	AIRE.p2	AK014876|Ccdc81|70884|coiled-coil domain containing 81	BC127049|Ccdc81|70884|coiled-coil domain containing 81	BC152307|Ccdc81|70884|coiled-coil domain containing 81	BC152308|Ccdc81|70884|coiled-coil domain containing 81	AK029544|Ccdc81|70884|coiled-coil domain containing 81	NM_001162979|Ccdc81|70884|coiled-coil domain containing 81
mm9_v1_chr7_+_17307277_17307306	1.34152	AIRE.p2	L49180|Ceacam9|26368|carcinoembryonic antigen-related cell adhesion molecule 9	NM_011927|Ceacam9|26368|carcinoembryonic antigen-related cell adhesion molecule 9	AK049543|Ceacam9|26368|carcinoembryonic antigen-related cell adhesion molecule 9
mm9_v1_chr16_-_4077714_4077843	1.33674	AIRE.p2	AK188521|Trap1|68015|TNF receptor-associated protein 1	BC006864|Trap1|68015|TNF receptor-associated protein 1	BC006685|Trap1|68015|TNF receptor-associated protein 1	AK002409|Trap1|68015|TNF receptor-associated protein 1	AK088471|Trap1|68015|TNF receptor-associated protein 1	AK162067|Trap1|68015|TNF receptor-associated protein 1	AK167181|Trap1|68015|TNF receptor-associated protein 1	BC022912|Trap1|68015|TNF receptor-associated protein 1	AK010341|Trap1|68015|TNF receptor-associated protein 1	NM_026508|Trap1|68015|TNF receptor-associated protein 1	AK143494|Trap1|68015|TNF receptor-associated protein 1
mm9_v1_chr9_-_114690887_114691007	1.33661	AIRE.p2	AK151785|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AF188504|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK168280|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	NM_133978|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	BC038633|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK167886|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	BC026773|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK168024|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AY241869|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK040123|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7
mm9_v1_chr16_-_57292963_57292977	1.32689	AIRE.p2	AK161475|Tmem30c|71027|transmembrane protein 30C	NM_027651|Tmem30c|71027|transmembrane protein 30C	AK016747|Tmem30c|71027|transmembrane protein 30C	AK016597|Tmem30c|71027|transmembrane protein 30C
mm9_v1_chr9_+_7692110_7692113	1.32661	AIRE.p2	BC119057|Mmp7|17393|matrix metallopeptidase 7	BC120655|Mmp7|17393|matrix metallopeptidase 7	NM_010810|Mmp7|17393|matrix metallopeptidase 7
mm9_v1_chr1_+_40141586_40141636	1.32563	AIRE.p2	AK132264|Il1r2|16178|interleukin 1 receptor, type II	NM_010555|Il1r2|16178|interleukin 1 receptor, type II	X59769|Il1r2|16178|interleukin 1 receptor, type II	BC032962|Il1r2|16178|interleukin 1 receptor, type II
mm9_v1_chr19_+_11771544_11771582	1.32294	AIRE.p2	AK143410|Gm97|225923|predicted gene 97	NM_001033283|Gm97|225923|predicted gene 97	BC141228|Gm97|225923|predicted gene 97	BC145553|Gm97|225923|predicted gene 97	BC094934|Gm97|225923|predicted gene 97
mm9_v1_chr4_+_146927385_146927415	1.32288	AIRE.p2	NM_001014397|Gm13154|433804|predicted gene 13154	BC085112|Gm13154|433804|predicted gene 13154
mm9_v1_chr19_-_44103644_44103736	1.32127	AIRE.p2	BC024068|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	BC034834|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	BC022141|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	BC025819|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	BC026766|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	AK050436|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	AK149451|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	NM_001001446|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	NM_001167905|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44
mm9_v1_chr7_+_135409196_135409210	1.3111	AIRE.p2	AK128900|Slc5a2|246787|solute carrier family 5 (sodium/glucose cotransporter), member 2	AY033886|Slc5a2|246787|solute carrier family 5 (sodium/glucose cotransporter), member 2	BC022226|Slc5a2|246787|solute carrier family 5 (sodium/glucose cotransporter), member 2	NM_133254|Slc5a2|246787|solute carrier family 5 (sodium/glucose cotransporter), member 2
mm9_v1_chr1_-_9999200_9999216	1.29943	AIRE.p2	BC022722|Lrrc67|69312|leucine rich repeat containing 67	NM_145692|Lrrc67|69312|leucine rich repeat containing 67	AK005871|Lrrc67|69312|leucine rich repeat containing 67	AK015164|Lrrc67|69312|leucine rich repeat containing 67	NM_027033|Lrrc67|69312|leucine rich repeat containing 67	AK076637|Lrrc67|69312|leucine rich repeat containing 67
mm9_v1_chr16_-_32079317_32079415	1.29265	AIRE.p2	BC086650|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2	NM_177326|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2
mm9_v1_chr7_-_108437135_108437187	1.29051	AIRE.p2	
mm9_v1_chr16_-_16829386_16829548	1.29024	AIRE.p2	AF173866|Spag6|50525|sperm associated antigen 6	BC090660|Spag6|50525|sperm associated antigen 6	AK053966|Spag6|50525|sperm associated antigen 6	AK005732|Spag6|50525|sperm associated antigen 6	BC100455|Spag6|50525|sperm associated antigen 6	AK054199|Spag6|50525|sperm associated antigen 6	NM_015773|Spag6|50525|sperm associated antigen 6	AK164680|Spag6|50525|sperm associated antigen 6
mm9_v1_chr9_+_96159123_96159160	1.28769	AIRE.p2	NM_001184709|Tfdp2|211586|transcription factor Dp 2	AK033356|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr14_-_20796411_20796481	1.28228	AIRE.p2	AK158697|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	NM_001038637|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	NM_010315|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2
mm9_v1_chr11_+_26287083_26287211	1.28222	AIRE.p2	AF513619|Fancl|67030|Fanconi anemia, complementation group L	NM_025923|Fancl|67030|Fanconi anemia, complementation group L	AK011520|Fancl|67030|Fanconi anemia, complementation group L	AK168538|Fancl|67030|Fanconi anemia, complementation group L	AK008605|Fancl|67030|Fanconi anemia, complementation group L	AK011903|Fancl|67030|Fanconi anemia, complementation group L	AK017431|Fancl|67030|Fanconi anemia, complementation group L	AK020981|Fancl|67030|Fanconi anemia, complementation group L	AK076017|Fancl|67030|Fanconi anemia, complementation group L	AK018018|Fancl|67030|Fanconi anemia, complementation group L	AK011752|Fancl|67030|Fanconi anemia, complementation group L	BC032876|Fancl|67030|Fanconi anemia, complementation group L
mm9_v1_chr17_-_35342157_35342435	1.28156	AIRE.p2	AK080308|Lta|16992|lymphotoxin A	AK153694|Lta|16992|lymphotoxin A	BC099464|Lta|16992|lymphotoxin A	NM_010735|Lta|16992|lymphotoxin A	AK156659|Lta|16992|lymphotoxin A
mm9_v1_chr7_-_27179256_27179261	1.28094	AIRE.p2	AY360472|Nlrp9c|330490|NLR family, pyrin domain containing 9C	AY596203|Nlrp9c|330490|NLR family, pyrin domain containing 9C	NM_001042612|Nlrp9c|330490|NLR family, pyrin domain containing 9C
mm9_v1_chr2_+_122012007_122012007	1.27648	AIRE.p2	AK016695|4933406J08Rik|74401|RIKEN cDNA 4933406J08 gene	NM_028914|4933406J08Rik|74401|RIKEN cDNA 4933406J08 gene
mm9_v1_chr2_-_24647157_24647300	1.27352	AIRE.p2	AK020308|Ehmt1|77683|euchromatic histone methyltransferase 1
mm9_v1_chr7_-_139978601_139978617	1.27266	AIRE.p2	BC035523|Fam53b|77938|family with sequence similarity 53, member B	AK020830|Fam53b|77938|family with sequence similarity 53, member B	NM_175268|Fam53b|77938|family with sequence similarity 53, member B
mm9_v1_chr4_-_60152702_60152728	1.26829	AIRE.p2	BC012221|Mup1|17840|major urinary protein 1	BC013649|Mup1|17840|major urinary protein 1	BC106092|Mup1|17840|major urinary protein 1	BC091775|Mup1|17840|major urinary protein 1	M28649|Mup1|17840|major urinary protein 1	NM_001045550|Mup2|17841|major urinary protein 2	NM_008647|Mup2|17841|major urinary protein 2
mm9_v1_chr8_-_44712538_44712623	1.26676	AIRE.p2	NM_001025240|Gm5346|384813|predicted gene 5346	BC151154|Gm5346|384813|predicted gene 5346	BC157897|Gm5346|384813|predicted gene 5346
mm9_v1_chr17_-_80879792_80879792	1.26588	AIRE.p2	AK140310|Sos1|20662|son of sevenless homolog 1 (Drosophila)	NM_009231|Sos1|20662|son of sevenless homolog 1 (Drosophila)
mm9_v1_chr11_-_53432145_53432166	1.26502	AIRE.p2	AB174765|Il4|16189|interleukin 4	BC027514|Il4|16189|interleukin 4	AF352783|Il4|16189|interleukin 4	M13238|Il4|16189|interleukin 4	NM_021283|Il4|16189|interleukin 4	X03532|Il4|16189|interleukin 4
mm9_v1_chr8_+_3665753_3665761	1.26281	AIRE.p2	AK007679|1810033B17Rik|69189|RIKEN cDNA 1810033B17 gene	AK087121|1810033B17Rik|69189|RIKEN cDNA 1810033B17 gene	AK036449|1810033B17Rik|69189|RIKEN cDNA 1810033B17 gene	NM_026985|1810033B17Rik|69189|RIKEN cDNA 1810033B17 gene
mm9_v1_chr8_+_28479182_28479253	1.25959	AIRE.p2	AK030464|Chrnb3|108043|cholinergic receptor, nicotinic, beta polypeptide 3	NM_027454|Chrnb3|108043|cholinergic receptor, nicotinic, beta polypeptide 3	NM_173212|Chrnb3|108043|cholinergic receptor, nicotinic, beta polypeptide 3	AK133689|Chrnb3|108043|cholinergic receptor, nicotinic, beta polypeptide 3	AK017571|Chrnb3|108043|cholinergic receptor, nicotinic, beta polypeptide 3
mm9_v1_chr19_-_33466561_33466800	1.25181	AIRE.p2	DQ788834|Rnls|67795|renalase, FAD-dependent amine oxidase	BC052355|Rnls|67795|renalase, FAD-dependent amine oxidase	AK014866|Rnls|67795|renalase, FAD-dependent amine oxidase	AK018322|Rnls|67795|renalase, FAD-dependent amine oxidase	AK170321|Rnls|67795|renalase, FAD-dependent amine oxidase	NM_001146342|Rnls|67795|renalase, FAD-dependent amine oxidase	NM_001167818|Rnls|67795|renalase, FAD-dependent amine oxidase
mm9_v1_chr7_-_19942264_19942376	1.24834	AIRE.p2	AK075701|Cd3eap|70333|CD3E antigen, epsilon polypeptide associated protein
mm9_v1_chr11_-_41814008_41814185	1.2474	AIRE.p2	M86572|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	BC031762|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	M62374|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	NM_008073|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK034338|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm9_v1_chr9_-_96371668_96371747	1.24699	AIRE.p2	AK208401|Rnf7|19823|ring finger protein 7
mm9_v1_chr19_+_12752655_12752655	1.24579	AIRE.p2	BC065104|Olfr1443|258693|olfactory receptor 1443	NM_146698|Olfr1443|258693|olfactory receptor 1443
mm9_v1_chr1_+_87546558_87546676	1.24523	AIRE.p2	AK042095|Sp100|20684|nuclear antigen Sp100	AK080004|Sp100|20684|nuclear antigen Sp100	AK152348|Sp100|20684|nuclear antigen Sp100	U83630|Sp100|20684|nuclear antigen Sp100	AK146054|Sp100|20684|nuclear antigen Sp100	AK153487|Sp100|20684|nuclear antigen Sp100	BC069183|Sp100|20684|nuclear antigen Sp100	AK083304|Sp100|20684|nuclear antigen Sp100	NM_013673|Sp100|20684|nuclear antigen Sp100	CT010199|Sp100|20684|nuclear antigen Sp100	U83636|Sp100|20684|nuclear antigen Sp100
mm9_v1_chr2_-_109118405_109118446	1.24317	AIRE.p2	BC115926|Mett5d1|76894|methyltransferase 5 domain containing 1	BC117549|Mett5d1|76894|methyltransferase 5 domain containing 1	BC106186|Mett5d1|76894|methyltransferase 5 domain containing 1	BC089533|Mett5d1|76894|methyltransferase 5 domain containing 1	AK002682|Mett5d1|76894|methyltransferase 5 domain containing 1	NM_029790|Mett5d1|76894|methyltransferase 5 domain containing 1
mm9_v1_chr19_-_4059293_4059472	1.23968	AIRE.p2	BC021614|BC021614|225884|cDNA sequence BC021614	NM_144869|BC021614|225884|cDNA sequence BC021614	BC034269|BC021614|225884|cDNA sequence BC021614
mm9_v1_chr8_-_122159431_122159579	1.23488	AIRE.p2	BC043936|Kcng4|66733|potassium voltage-gated channel, subfamily G, member 4	NM_025734|Kcng4|66733|potassium voltage-gated channel, subfamily G, member 4
mm9_v1_chrX_-_92853721_92853847	1.23204	AIRE.p2	AK129302|Zc4h2|245522|zinc finger, C4H2 domain containing	AK162005|Zc4h2|245522|zinc finger, C4H2 domain containing	AK086554|Zc4h2|245522|zinc finger, C4H2 domain containing	BC050850|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119285|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119311|Zc4h2|245522|zinc finger, C4H2 domain containing	BC079862|Zc4h2|245522|zinc finger, C4H2 domain containing	NM_001003916|Zc4h2|245522|zinc finger, C4H2 domain containing	AK155445|Zc4h2|245522|zinc finger, C4H2 domain containing
mm9_v1_chr3_-_88259682_88259708	1.22977	AIRE.p2	NM_013658|Sema4a|20351|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm9_v1_chr11_-_42134509_42134538	1.2277	AIRE.p2	X51986|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6
mm9_v1_chrX_+_97710893_97711108	1.22562	AIRE.p2	AK218313|Igbp1|18518|immunoglobulin (CD79A) binding protein 1	AK210875|Igbp1|18518|immunoglobulin (CD79A) binding protein 1
mm9_v1_chr5_-_135825744_135825913	1.22524	AIRE.p2	AY029192|Fkbp6|94244|FK506 binding protein 6	AF367710|Fkbp6|94244|FK506 binding protein 6	AF367711|Fkbp6|94244|FK506 binding protein 6	NM_033571|Fkbp6|94244|FK506 binding protein 6	AF367709|Fkbp6|94244|FK506 binding protein 6	AK090036|Fkbp6|94244|FK506 binding protein 6	BC139092|Fkbp6|94244|FK506 binding protein 6	BC139097|Fkbp6|94244|FK506 binding protein 6
mm9_v1_chr18_-_50728323_50728377	1.22215	AIRE.p2	AK014922|Hdhd1a|67365|haloacid dehalogenase-like hydrolase domain containing 1A	BC048447|Hdhd1a|67365|haloacid dehalogenase-like hydrolase domain containing 1A	NM_026108|Hdhd1a|67365|haloacid dehalogenase-like hydrolase domain containing 1A	AK007231|Hdhd1a|67365|haloacid dehalogenase-like hydrolase domain containing 1A
mm9_v1_chr8_+_73221637_73221637	1.21001	AIRE.p2	NM_010592|Jund|16478|Jun proto-oncogene related gene d
mm9_v1_chr4_-_124742875_124742900	1.2082	AIRE.p2	BC118619|Dnali1|75563|dynein, axonemal, light intermediate polypeptide 1	BC122552|Dnali1|75563|dynein, axonemal, light intermediate polypeptide 1	AK077109|Dnali1|75563|dynein, axonemal, light intermediate polypeptide 1	NM_175223|Dnali1|75563|dynein, axonemal, light intermediate polypeptide 1
mm9_v1_chr13_-_84204320_84204376	1.20656	AIRE.p2	AK082072|LOC553095|553095|hypothetical LOC553095
mm9_v1_chr5_+_110783114_110783176	1.20616	AIRE.p2	AK141249|Gm1679|381667|predicted gene 1679	NM_001033459|Gm1679|381667|predicted gene 1679	BC147447|Gm1679|381667|predicted gene 1679	BC147469|Gm1679|381667|predicted gene 1679	BC171993|Gm1679|381667|predicted gene 1679
mm9_v1_chr2_-_176421012_176421051	1.19767	AIRE.p2	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001099349|Gm14308|100043381|predicted gene 14308	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr10_+_127691272_127691399	1.19746	AIRE.p2	BC022137|Apon|28194|apolipoprotein N	BC030734|Apon|28194|apolipoprotein N
mm9_v1_chr6_-_49195555_49195581	1.19623	AIRE.p2	AK164994|Tra2a|101214|transformer 2 alpha homolog (Drosophila)
mm9_v1_chr2_+_97306600_97306623	1.19552	AIRE.p2	
mm9_v1_chr7_+_51392136_51392136	1.18771	AIRE.p2	J03877|Klk1b16|16615|kallikrein 1-related peptidase b16	NM_008454|Klk1b16|16615|kallikrein 1-related peptidase b16
mm9_v1_chr16_+_7409879_7410026	1.18492	AIRE.p2	AK034297|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr1_-_196918418_196918441	1.18256	AIRE.p2	AB001566|Cd46|17221|CD46 antigen, complement regulatory protein	AB022600|Cd46|17221|CD46 antigen, complement regulatory protein	AB010919|Cd46|17221|CD46 antigen, complement regulatory protein	AK006632|Cd46|17221|CD46 antigen, complement regulatory protein	BC150660|Cd46|17221|CD46 antigen, complement regulatory protein	NM_010778|Cd46|17221|CD46 antigen, complement regulatory protein
mm9_v1_chr4_-_60434715_60434862	1.18117	AIRE.p2	EU882232|Mup19|100189605|major urinary protein 19	AJ309921|Mup10|100039008|major urinary protein 10	BC012221|Mup1|17840|major urinary protein 1	BC013649|Mup1|17840|major urinary protein 1	BC055353|LOC100048884|100048884|novel member of the major urinary protein (Mup) gene family	BC106092|Mup1|17840|major urinary protein 1	BC091775|Mup1|17840|major urinary protein 1	M16356|Mup2|17841|major urinary protein 2	BC012259|Mup2|17841|major urinary protein 2	NM_001126319|Mup9|100038948|major urinary protein 9
mm9_v1_chr17_+_23737822_23737907	1.17987	AIRE.p2	AK141259|Zscan10|332221|zinc finger and SCAN domain containing 10	NM_001033425|Zscan10|332221|zinc finger and SCAN domain containing 10	DQ323929|Zscan10|332221|zinc finger and SCAN domain containing 10	DQ323930|Zscan10|332221|zinc finger and SCAN domain containing 10	DQ323931|Zscan10|332221|zinc finger and SCAN domain containing 10	EF152499|Zscan10|332221|zinc finger and SCAN domain containing 10	EF152500|Zscan10|332221|zinc finger and SCAN domain containing 10	BC068284|Zscan10|332221|zinc finger and SCAN domain containing 10
mm9_v1_chrX_+_100825924_100825935	1.17949	AIRE.p2	AK015789|Zcchc13|75064|zinc finger, CCHC domain containing 13	NM_029158|Zcchc13|75064|zinc finger, CCHC domain containing 13	BC145772|Zcchc13|75064|zinc finger, CCHC domain containing 13	BC145774|Zcchc13|75064|zinc finger, CCHC domain containing 13
mm9_v1_chr4_+_88445478_88445478	1.16852	AIRE.p2	NM_001085533|Gm13275|545652|predicted gene 13275
mm9_v1_chr4_+_88430957_88430957	1.16586	AIRE.p2	NM_001085532|Gm13276|545649|predicted gene 13276
mm9_v1_chr4_+_88442645_88442645	1.16586	AIRE.p2	NM_001098841|Gm13278|545651|predicted gene 13278
mm9_v1_chr4_+_88433880_88433880	1.16586	AIRE.p2	NM_001098840|Gm13277|545650|predicted gene 13277
mm9_v1_chr4_+_88436798_88436798	1.16586	AIRE.p2	NM_001098841|Gm13278|545651|predicted gene 13278
mm9_v1_chr4_+_24825226_24825304	1.16381	AIRE.p2	NM_026742|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK160341|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK034728|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK019042|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	BC028764|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK003553|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4
mm9_v1_chr3_+_63780020_63780051	1.16215	AIRE.p2	AK146654|Gmps|229363|guanine monophosphate synthetase
mm9_v1_chr10_-_80827546_80827600	1.1611	AIRE.p2	AK008872|4930404N11Rik|432479|RIKEN cDNA 4930404N11 gene
mm9_v1_chr3_-_94910762_94910779	1.16094	AIRE.p2	BC031774|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	NM_008847|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm9_v1_chr17_-_23736453_23736453	1.15549	AIRE.p2	AK030240|Zfp13|22654|zinc finger protein 13	NM_011747|Zfp13|22654|zinc finger protein 13
mm9_v1_chr13_+_28234352_28234406	1.15508	AIRE.p2	AK005447|Prl5a1|28078|prolactin family 5, subfamily a, member 1	NM_023746|Prl5a1|28078|prolactin family 5, subfamily a, member 1	BC051672|Prl5a1|28078|prolactin family 5, subfamily a, member 1	AF226611|Prl5a1|28078|prolactin family 5, subfamily a, member 1
mm9_v1_chr11_-_94837640_94837640	1.15152	AIRE.p2	AB024920|Sgca|20391|sarcoglycan, alpha (dystrophin-associated glycoprotein)	NM_009161|Sgca|20391|sarcoglycan, alpha (dystrophin-associated glycoprotein)
mm9_v1_chr9_-_110018085_110018088	1.15108	AIRE.p2	AB047557|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	NM_133347|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	BC058331|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm9_v1_chr14_+_73992436_73992469	1.1437	AIRE.p2	AK003867|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit
mm9_v1_chrX_-_6618729_6618744	1.14334	AIRE.p2	AJ555465|Ccnb3|209091|cyclin B3	AJ555464|Ccnb3|209091|cyclin B3	NM_183015|Ccnb3|209091|cyclin B3
mm9_v1_chr1_-_173465366_173465415	1.13828	AIRE.p2	BC150795|Itln1|16429|intelectin 1 (galactofuranose binding)	AY157363|Itln1|16429|intelectin 1 (galactofuranose binding)	AY157364|Itln1|16429|intelectin 1 (galactofuranose binding)	AY619693|Itln1|16429|intelectin 1 (galactofuranose binding)
mm9_v1_chr16_-_4679664_4679776	1.13817	AIRE.p2	AK143624|Coro7|78885|coronin 7	AK018739|Coro7|78885|coronin 7	AK088155|Coro7|78885|coronin 7	AK041000|Coro7|78885|coronin 7	AK037894|Coro7|78885|coronin 7	BC061006|Coro7|78885|coronin 7	NM_030205|Coro7|78885|coronin 7	AK040408|Coro7|78885|coronin 7	AK150051|Coro7|78885|coronin 7	AK039585|Coro7|78885|coronin 7
mm9_v1_chr10_-_3557441_3557947	1.13785	AIRE.p2	AY397681|Oprm1|18390|opioid receptor, mu 1	AF062754|Oprm1|18390|opioid receptor, mu 1	DQ363376|Oprm1|18390|opioid receptor, mu 1	DQ363377|Oprm1|18390|opioid receptor, mu 1	AB441734|Oprm1|18390|opioid receptor, mu 1	AB441735|Oprm1|18390|opioid receptor, mu 1	AB441736|Oprm1|18390|opioid receptor, mu 1	AB441737|Oprm1|18390|opioid receptor, mu 1	AB441738|Oprm1|18390|opioid receptor, mu 1	AB441739|Oprm1|18390|opioid receptor, mu 1	AB441740|Oprm1|18390|opioid receptor, mu 1	AB441741|Oprm1|18390|opioid receptor, mu 1	AB441742|Oprm1|18390|opioid receptor, mu 1	AB441743|Oprm1|18390|opioid receptor, mu 1	AK038389|Oprm1|18390|opioid receptor, mu 1	AF062753|Oprm1|18390|opioid receptor, mu 1	AF074973|Oprm1|18390|opioid receptor, mu 1	AF074974|Oprm1|18390|opioid receptor, mu 1	AF167565|Oprm1|18390|opioid receptor, mu 1	AF167566|Oprm1|18390|opioid receptor, mu 1	AF167567|Oprm1|18390|opioid receptor, mu 1	AF167568|Oprm1|18390|opioid receptor, mu 1	AF346812|Oprm1|18390|opioid receptor, mu 1	AF346813|Oprm1|18390|opioid receptor, mu 1	AF346814|Oprm1|18390|opioid receptor, mu 1	AY036621|Oprm1|18390|opioid receptor, mu 1	AY160190|Oprm1|18390|opioid receptor, mu 1	AY923181|Oprm1|18390|opioid receptor, mu 1	AY923183|Oprm1|18390|opioid receptor, mu 1	BC119545|Oprm1|18390|opioid receptor, mu 1	DQ868787|Oprm1|18390|opioid receptor, mu 1	DQ868788|Oprm1|18390|opioid receptor, mu 1	EF105311|Oprm1|18390|opioid receptor, mu 1	EF105312|Oprm1|18390|opioid receptor, mu 1	EF105313|Oprm1|18390|opioid receptor, mu 1	EF105314|Oprm1|18390|opioid receptor, mu 1	AY923182|Oprm1|18390|opioid receptor, mu 1	AB047546|Oprm1|18390|opioid receptor, mu 1	U19380|Oprm1|18390|opioid receptor, mu 1	NM_001039652|Oprm1|18390|opioid receptor, mu 1	U26915|Oprm1|18390|opioid receptor, mu 1
mm9_v1_chr8_+_26960094_26960127	1.13695	AIRE.p2	NM_008432|Kcnu1|16532|potassium channel, subfamily U, member 1	AF039213|Kcnu1|16532|potassium channel, subfamily U, member 1
mm9_v1_chr17_-_23330163_23330200	1.13594	AIRE.p2	BC061205|Zfp40|22700|zinc finger protein 40	AK164585|Zfp40|22700|zinc finger protein 40	BC065097|Zfp40|22700|zinc finger protein 40	NM_009555|Zfp40|22700|zinc finger protein 40	AK049894|Zfp40|22700|zinc finger protein 40
mm9_v1_chr8_-_22995888_22995905	1.13085	AIRE.p2	BC109177|Defb9|246079|defensin beta 9	AJ437647|Defb9|246079|defensin beta 9	NM_139219|Defb9|246079|defensin beta 9
mm9_v1_chr6_+_128349783_128350065	1.12802	AIRE.p2	AJ278170|Nrip2|60345|nuclear receptor interacting protein 2	NM_001162858|Nrip2|60345|nuclear receptor interacting protein 2	NM_021717|Nrip2|60345|nuclear receptor interacting protein 2	AK156526|Nrip2|60345|nuclear receptor interacting protein 2	AK134689|Nrip2|60345|nuclear receptor interacting protein 2	BC115523|Nrip2|60345|nuclear receptor interacting protein 2	BC094230|Nrip2|60345|nuclear receptor interacting protein 2
mm9_v1_chr14_+_34402392_34402458	1.12597	AIRE.p2	AK017003|Ptpn20|19256|protein tyrosine phosphatase, non-receptor type 20	NM_008978|Ptpn20|19256|protein tyrosine phosphatase, non-receptor type 20	AK029493|Ptpn20|19256|protein tyrosine phosphatase, non-receptor type 20
mm9_v1_chr9_+_62225584_62225601	1.12589	AIRE.p2	AK166489|Anp32a|11737|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm9_v1_chrX_+_51028002_51028007	1.1255	AIRE.p2	AK015678|4930502E18Rik|75013|RIKEN cDNA 4930502E18 gene	BC115663|4930502E18Rik|75013|RIKEN cDNA 4930502E18 gene	BC115664|4930502E18Rik|75013|RIKEN cDNA 4930502E18 gene	NM_029142|4930502E18Rik|75013|RIKEN cDNA 4930502E18 gene
mm9_v1_chr18_-_43847367_43847426	1.12504	AIRE.p2	AK133750|Jakmip2|76217|janus kinase and microtubule interacting protein 2	NM_001163637|Jakmip2|76217|janus kinase and microtubule interacting protein 2
mm9_v1_chr3_-_98662116_98662184	1.12297	AIRE.p2	BC052659|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	M58567|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1
mm9_v1_chr11_+_97702093_97702093	1.11914	AIRE.p2	NM_001080935|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene
mm9_v1_chr5_+_136108487_136108731	1.11827	AIRE.p2	AK140006|Rhbdd2|215160|rhomboid domain containing 2	AK141182|Rhbdd2|215160|rhomboid domain containing 2	NM_146002|Rhbdd2|215160|rhomboid domain containing 2	AK165926|Rhbdd2|215160|rhomboid domain containing 2	AK041845|Rhbdd2|215160|rhomboid domain containing 2	AK030434|Rhbdd2|215160|rhomboid domain containing 2	AK043674|Rhbdd2|215160|rhomboid domain containing 2	BC018360|Rhbdd2|215160|rhomboid domain containing 2	BC028957|Rhbdd2|215160|rhomboid domain containing 2	AK189822|Rhbdd2|215160|rhomboid domain containing 2	AK212798|Rhbdd2|215160|rhomboid domain containing 2
mm9_v1_chr10_+_52111413_52111541	1.11776	AIRE.p2	AK017780|Nepn|66650|nephrocan	AY938536|Nepn|66650|nephrocan	NM_025684|Nepn|66650|nephrocan	AK017656|Nepn|66650|nephrocan	BC132046|Nepn|66650|nephrocan	BC132048|Nepn|66650|nephrocan	AK017842|Nepn|66650|nephrocan
mm9_v1_chr9_-_97011440_97011575	1.11564	AIRE.p2	BC008171|Slc25a36|192287|solute carrier family 25, member 36	AK078779|Slc25a36|192287|solute carrier family 25, member 36	NM_138756|Slc25a36|192287|solute carrier family 25, member 36	AK042075|Slc25a36|192287|solute carrier family 25, member 36	AK053646|Slc25a36|192287|solute carrier family 25, member 36
mm9_v1_chr11_+_82878590_82878700	1.11484	AIRE.p2	AF099973|Slfn2|20556|schlafen 2	NM_011408|Slfn2|20556|schlafen 2	BC138749|Slfn2|20556|schlafen 2	BC138750|Slfn2|20556|schlafen 2
mm9_v1_chr8_+_109034784_109034845	1.11354	AIRE.p2	AK045041|Cdh3|12560|cadherin 3	AK164577|Cdh3|12560|cadherin 3	NM_007665|Cdh3|12560|cadherin 3	AK031265|Cdh3|12560|cadherin 3	NM_001037809|Cdh3|12560|cadherin 3	X06340|Cdh3|12560|cadherin 3	BC098459|Cdh3|12560|cadherin 3
mm9_v1_chr12_-_32398730_32398790	1.11273	AIRE.p2	AK140577|Gpr22|73010|G protein-coupled receptor 22	AK034194|Gpr22|73010|G protein-coupled receptor 22	AK013755|Gpr22|73010|G protein-coupled receptor 22	AK048077|Gpr22|73010|G protein-coupled receptor 22	AK141569|Gpr22|73010|G protein-coupled receptor 22	BC089509|Gpr22|73010|G protein-coupled receptor 22	NM_175191|Gpr22|73010|G protein-coupled receptor 22
mm9_v1_chr17_+_74898763_74898780	1.11188	AIRE.p2	AK086213|Yipf4|67864|Yip1 domain family, member 4
mm9_v1_chr7_-_13007839_13007937	1.10433	AIRE.p2	AK137311|Zfp551|619331|zinc fingr protein 551	NM_001033820|Zfp551|619331|zinc fingr protein 551	BC141160|Zfp551|619331|zinc fingr protein 551	BC145466|Zfp551|619331|zinc fingr protein 551
mm9_v1_chr11_-_43239663_43239784	1.10336	AIRE.p2	NM_001131054|Pttg1|30939|pituitary tumor-transforming gene 1	BC023324|Pttg1|30939|pituitary tumor-transforming gene 1
mm9_v1_chr1_+_138311847_138311988	1.10261	AIRE.p2	AK004833|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	NM_026500|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	AK013179|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	AK133731|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	AK076462|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	BC023840|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
mm9_v1_chrX_+_35669345_35669443	1.10098	AIRE.p2	BC137923|Atp1b4|67821|ATPase, (Na+)/K+ transporting, beta 4 polypeptide	BC137924|Atp1b4|67821|ATPase, (Na+)/K+ transporting, beta 4 polypeptide	AK053500|Atp1b4|67821|ATPase, (Na+)/K+ transporting, beta 4 polypeptide	AF348324|Atp1b4|67821|ATPase, (Na+)/K+ transporting, beta 4 polypeptide	AF348325|Atp1b4|67821|ATPase, (Na+)/K+ transporting, beta 4 polypeptide	NM_133690|Atp1b4|67821|ATPase, (Na+)/K+ transporting, beta 4 polypeptide
mm9_v1_chr8_+_23069185_23069185	1.10036	AIRE.p2	AK135805|C86695|97476|expressed sequence C86695	NM_001081662|C86695|97476|expressed sequence C86695
mm9_v1_chr5_+_148241736_148241750	1.09903	AIRE.p2	AK153632|Pan3|72587|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm9_v1_chr18_+_52805869_52805873	1.0972	AIRE.p2	AK018840|1700034E13Rik|78414|RIKEN cDNA 1700034E13 gene	BC048563|1700034E13Rik|78414|RIKEN cDNA 1700034E13 gene	NM_030097|1700034E13Rik|78414|RIKEN cDNA 1700034E13 gene
mm9_v1_chr19_-_7008874_7009004	1.09577	AIRE.p2	BC119784|Kcnk4|16528|potassium channel, subfamily K, member 4	NM_008431|Kcnk4|16528|potassium channel, subfamily K, member 4
mm9_v1_chr7_-_90943328_90943348	1.09529	AIRE.p2	BC048079|1700026D08Rik|75556|RIKEN cDNA 1700026D08 gene	AK006375|1700026D08Rik|75556|RIKEN cDNA 1700026D08 gene	BC061016|1700026D08Rik|75556|RIKEN cDNA 1700026D08 gene	NM_029335|1700026D08Rik|75556|RIKEN cDNA 1700026D08 gene
mm9_v1_chr11_+_80671864_80671927	1.09483	AIRE.p2	AK006357|Spaca3|75622|sperm acrosome associated 3	BC100503|Spaca3|75622|sperm acrosome associated 3	NM_029367|Spaca3|75622|sperm acrosome associated 3	AY572448|Spaca3|75622|sperm acrosome associated 3
mm9_v1_chr17_+_19190456_19190456	1.09452	AIRE.p2	NM_001104550|Vmn2r98|224552|vomeronasal 2, receptor 98
mm9_v1_chr9_+_64809499_64809621	1.09295	AIRE.p2	AK168222|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene
mm9_v1_chr6_-_49213980_49214011	1.09212	AIRE.p2	AK171788|Tra2a|101214|transformer 2 alpha homolog (Drosophila)	AK172413|Tra2a|101214|transformer 2 alpha homolog (Drosophila)	BC057448|Tra2a|101214|transformer 2 alpha homolog (Drosophila)	BC058764|Tra2a|101214|transformer 2 alpha homolog (Drosophila)	AK076606|Tra2a|101214|transformer 2 alpha homolog (Drosophila)
mm9_v1_chrX_+_90920450_90920749	1.08997	AIRE.p2	NM_211138|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	BC048917|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189949|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK032027|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chr14_-_66627993_66628046	1.08923	AIRE.p2	BC019856|Gulo|268756|gulonolactone (L-) oxidase	BC028822|Gulo|268756|gulonolactone (L-) oxidase	BC028828|Gulo|268756|gulonolactone (L-) oxidase	AK167460|Gulo|268756|gulonolactone (L-) oxidase	AK077740|Gulo|268756|gulonolactone (L-) oxidase	NM_178747|Gulo|268756|gulonolactone (L-) oxidase
mm9_v1_chr5_-_21371421_21371421	1.08878	AIRE.p2	AF529192|Slc26a5|80979|solute carrier family 26, member 5	NM_030727|Slc26a5|80979|solute carrier family 26, member 5
mm9_v1_chr9_-_53418394_53418489	1.08403	AIRE.p2	AK146241|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK032097|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK075593|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	BC024763|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	BC024429|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AJ510150|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK169771|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK081715|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	NM_144784|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK163402|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1
mm9_v1_chr18_-_35821788_35821845	1.08009	AIRE.p2	BC060950|Spata24|71242|spermatogenesis associated 24	AK017218|Spata24|71242|spermatogenesis associated 24	AK016341|Spata24|71242|spermatogenesis associated 24	AK012241|Spata24|71242|spermatogenesis associated 24	AY730532|Spata24|71242|spermatogenesis associated 24	NM_027733|Spata24|71242|spermatogenesis associated 24	NM_029485|Spata24|71242|spermatogenesis associated 24
mm9_v1_chrX_-_119510890_119511030	1.07686	AIRE.p2	BC027045|Nap1l3|54561|nucleosome assembly protein 1-like 3	AK078521|Nap1l3|54561|nucleosome assembly protein 1-like 3	BC020176|Nap1l3|54561|nucleosome assembly protein 1-like 3	NM_138742|Nap1l3|54561|nucleosome assembly protein 1-like 3	AB010711|Nap1l3|54561|nucleosome assembly protein 1-like 3
mm9_v1_chr11_+_83755589_83755687	1.07669	AIRE.p2	NM_030096|Ddx52|78394|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	AK141200|Ddx52|78394|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	AK133545|Ddx52|78394|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	AK080767|Ddx52|78394|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	AK166789|Ddx52|78394|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	AK019204|Ddx52|78394|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	BC029094|Ddx52|78394|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
mm9_v1_chr19_-_10557362_10557417	1.076	AIRE.p2	BC118523|4930579J09Rik|67752|RIKEN cDNA 4930579J09 gene	AY032666|4930579J09Rik|67752|RIKEN cDNA 4930579J09 gene	NM_133689|4930579J09Rik|67752|RIKEN cDNA 4930579J09 gene	AK005821|4930579J09Rik|67752|RIKEN cDNA 4930579J09 gene	AK016325|4930579J09Rik|67752|RIKEN cDNA 4930579J09 gene
mm9_v1_chr11_-_101036732_101036756	1.0756	AIRE.p2	AF215983|Ccr10|12777|chemokine (C-C motif) receptor 10	AF208238|Ccr10|12777|chemokine (C-C motif) receptor 10	AF215982|Ccr10|12777|chemokine (C-C motif) receptor 10	AK090044|Ccr10|12777|chemokine (C-C motif) receptor 10	BC117043|Ccr10|12777|chemokine (C-C motif) receptor 10	BC120542|Ccr10|12777|chemokine (C-C motif) receptor 10	NM_007721|Ccr10|12777|chemokine (C-C motif) receptor 10
mm9_v1_chr13_-_119175893_119176078	1.07176	AIRE.p2	AK013360|Mrps30|59054|mitochondrial ribosomal protein S30	BC029784|Mrps30|59054|mitochondrial ribosomal protein S30	AK011476|Mrps30|59054|mitochondrial ribosomal protein S30	AK151642|Mrps30|59054|mitochondrial ribosomal protein S30	NM_021556|Mrps30|59054|mitochondrial ribosomal protein S30
mm9_v1_chr7_+_109250256_109250275	1.0704	AIRE.p2	AK003107|Art1|11870|ADP-ribosyltransferase 1	AK009284|Art1|11870|ADP-ribosyltransferase 1	AK009902|Art1|11870|ADP-ribosyltransferase 1	NM_009710|Art1|11870|ADP-ribosyltransferase 1	BC132492|Art1|11870|ADP-ribosyltransferase 1	BC132496|Art1|11870|ADP-ribosyltransferase 1	BC063760|Art1|11870|ADP-ribosyltransferase 1
mm9_v1_chr1_+_163325568_163325712	1.06684	AIRE.p2	NM_009452|Tnfsf4|22164|tumor necrosis factor (ligand) superfamily, member 4	U12763|Tnfsf4|22164|tumor necrosis factor (ligand) superfamily, member 4	FJ176943|Tnfsf4|22164|tumor necrosis factor (ligand) superfamily, member 4
mm9_v1_chr7_-_20189709_20189838	1.06651	AIRE.p2	AF042799|Clasrp|53609|CLK4-associating serine/arginine rich protein	AK009334|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC010728|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC079543|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC103781|Clasrp|53609|CLK4-associating serine/arginine rich protein	AK159443|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC106129|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC060092|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC051916|Clasrp|53609|CLK4-associating serine/arginine rich protein	NM_016680|Clasrp|53609|CLK4-associating serine/arginine rich protein
mm9_v1_chr11_-_46503858_46503858	1.06607	AIRE.p2	AB009015|Timd2|171284|T-cell immunoglobulin and mucin domain containing 2	NM_001161356|Timd2|171284|T-cell immunoglobulin and mucin domain containing 2
mm9_v1_chrX_+_72627673_72627773	1.06052	AIRE.p2	NM_026126|Fundc2|67391|FUN14 domain containing 2	AK013460|Fundc2|67391|FUN14 domain containing 2	AK014705|Fundc2|67391|FUN14 domain containing 2	AK031214|Fundc2|67391|FUN14 domain containing 2	BC049566|Fundc2|67391|FUN14 domain containing 2	BC061464|Fundc2|67391|FUN14 domain containing 2	AY234858|Fundc2|67391|FUN14 domain containing 2
mm9_v1_chr7_+_107423813_107423829	1.05762	AIRE.p2	AK164085|Pgm2l1|70974|phosphoglucomutase 2-like 1
mm9_v1_chr10_+_32803288_32803366	1.05548	AIRE.p2	NM_029726|Trdn|76757|triadin	AK009816|Trdn|76757|triadin	AF223415|Trdn|76757|triadin	AF223416|Trdn|76757|triadin	BC034343|Trdn|76757|triadin	AF223417|Trdn|76757|triadin
mm9_v1_chrX_-_102265380_102265463	1.05475	AIRE.p2	AK153718|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC019699|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK017459|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085485|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085098|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084980|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC055463|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK080296|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK043766|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK047017|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084653|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK144934|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK157237|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK164650|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene
mm9_v1_chr2_-_177691943_177692036	1.05465	AIRE.p2	BC042711|Gm14326|665211|predicted gene 14326	BC079554|Gm14326|665211|predicted gene 14326	NM_001190302|Gm14326|665211|predicted gene 14326
mm9_v1_chr6_-_97010364_97010406	1.05067	AIRE.p2	BC089490|Fam19a4|320701|family with sequence similarity 19, member A4	AK081531|Fam19a4|320701|family with sequence similarity 19, member A4	AK084114|Fam19a4|320701|family with sequence similarity 19, member A4	NM_177233|Fam19a4|320701|family with sequence similarity 19, member A4	AK149355|Fam19a4|320701|family with sequence similarity 19, member A4
mm9_v1_chr11_+_69435553_69435610	1.04833	AIRE.p2	AK011406|Sat2|69215|spermidine/spermine N1-acetyl transferase 2	AK161230|Sat2|69215|spermidine/spermine N1-acetyl transferase 2	BC061227|Sat2|69215|spermidine/spermine N1-acetyl transferase 2	NM_026991|Sat2|69215|spermidine/spermine N1-acetyl transferase 2
mm9_v1_chr1_+_44204588_44204751	1.04651	AIRE.p2	AK047192|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5	NM_011729|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5	U40796|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5
mm9_v1_chr1_+_173612132_173612157	1.03971	AIRE.p2	AK146173|Cd48|12506|CD48 antigen	AK088027|Cd48|12506|CD48 antigen	AK084984|Cd48|12506|CD48 antigen	BC060977|Cd48|12506|CD48 antigen
mm9_v1_chr5_+_125365789_125365870	1.03521	AIRE.p2	BC096550|Zfp664|269704|zinc finger protein 664
mm9_v1_chr4_-_149072755_149072816	1.03516	AIRE.p2	BC035203|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164049|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164050|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_008840|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm9_v1_chr11_+_46337752_46337752	1.03409	AIRE.p2	NM_001163357|Gm12169|210535|predicted gene 12169
mm9_v1_chr8_+_23348971_23348971	1.02977	AIRE.p2	AB039946|Thsd1|56229|thrombospondin, type I, domain 1	BC119603|Thsd1|56229|thrombospondin, type I, domain 1	NM_019576|Thsd1|56229|thrombospondin, type I, domain 1
mm9_v1_chr16_+_17489703_17489734	1.02397	AIRE.p2	AK158809|Aifm3|72168|apoptosis-inducing factor, mitochondrion-associated 3
mm9_v1_chr10_+_39332934_39333058	1.02071	AIRE.p2	AK037407|Traf3ip2|103213|TRAF3 interacting protein 2	BC138234|Traf3ip2|103213|TRAF3 interacting protein 2	BC138235|Traf3ip2|103213|TRAF3 interacting protein 2	AK031556|Traf3ip2|103213|TRAF3 interacting protein 2	AK098107|Traf3ip2|103213|TRAF3 interacting protein 2	BC096483|Traf3ip2|103213|TRAF3 interacting protein 2
mm9_v1_chrX_-_154006916_154006936	1.01941	AIRE.p2	AK161451|Yy2|100073351|Yy2 transcription factor	NM_001098723|Yy2|100073351|Yy2 transcription factor	AK077220|Mbtps2|270669|membrane-bound transcription factor peptidase, site 2
mm9_v1_chr5_+_11918042_11918042	1.0179	AIRE.p2	BC133658|4933402N22Rik|545732|RIKEN cDNA 4933402N22 gene	NM_001177510|4933402N22Rik|545732|RIKEN cDNA 4933402N22 gene
mm9_v1_chr8_-_108503199_108503328	1.01715	AIRE.p2	AF488553|Dpep3|71854|dipeptidase 3	AK006085|Dpep3|71854|dipeptidase 3	NM_027960|Dpep3|71854|dipeptidase 3	BC051148|Dpep3|71854|dipeptidase 3
mm9_v1_chr5_+_16981913_16981939	1.01575	AIRE.p2	BC116901|Speer4f|70935|spermatogenesis associated glutamate (E)-rich protein 4f	BC116903|Speer4f|70935|spermatogenesis associated glutamate (E)-rich protein 4f	AK015022|Speer4f|70935|spermatogenesis associated glutamate (E)-rich protein 4f	NM_027609|Speer4f|70935|spermatogenesis associated glutamate (E)-rich protein 4f
mm9_v1_chr15_+_4325490_4325644	1.0122	AIRE.p2	AK038575|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	NM_177355|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	BC137637|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	BC137639|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	AK044972|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3
mm9_v1_chrX_-_7505625_7505732	1.01179	AIRE.p2	AK141212|Eras|353283|ES cell-expressed Ras	BC119277|Eras|353283|ES cell-expressed Ras	BC119281|Eras|353283|ES cell-expressed Ras	AB093573|Eras|353283|ES cell-expressed Ras	NM_181548|Eras|353283|ES cell-expressed Ras
mm9_v1_chr11_-_29925939_29926032	1.0042	AIRE.p2	AK049034|Eml6|237711|echinoderm microtubule associated protein like 6	NM_146016|Eml6|237711|echinoderm microtubule associated protein like 6
mm9_v1_chr12_+_34114475_34114519	1.00028	AIRE.p2	AK010829|Twistnb|28071|TWIST neighbor	NM_172253|Twistnb|28071|TWIST neighbor	AK016638|Twistnb|28071|TWIST neighbor	AK017016|Twistnb|28071|TWIST neighbor	AK153090|Twistnb|28071|TWIST neighbor	AK160682|Twistnb|28071|TWIST neighbor	BC139162|Twistnb|28071|TWIST neighbor	BC139163|Twistnb|28071|TWIST neighbor	AK017810|Twistnb|28071|TWIST neighbor	AK008677|Twistnb|28071|TWIST neighbor	BC082580|Twistnb|28071|TWIST neighbor
mm9_v1_chr14_-_20796255_20796277	0.998219	AIRE.p2	AK003588|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	AK036138|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2
mm9_v1_chr12_+_85393093_85393100	0.996632	AIRE.p2	AY563098|Acot3|171281|acyl-CoA thioesterase 3	AY563097|Acot3|171281|acyl-CoA thioesterase 3	NM_134246|Acot3|171281|acyl-CoA thioesterase 3
mm9_v1_chr1_-_42749940_42749978	0.98697	AIRE.p2	BC059892|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	BC058417|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr10_-_78560301_78560348	0.986911	AIRE.p2	BC082302|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene	AK148309|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene	NM_001004362|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene
mm9_v1_chr12_+_16817904_16818081	0.986185	AIRE.p2	BC037656|E2f6|50496|E2F transcription factor 6	AB221552|E2f6|50496|E2F transcription factor 6
mm9_v1_chr5_+_34185760_34185844	0.986004	AIRE.p2	NM_001081102|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_001177884|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_175231|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	BC079668|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)
mm9_v1_chr17_+_34341467_34341526	0.985384	AIRE.p2	AK145234|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151657|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK161091|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	BC051257|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK020022|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK079667|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151376|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151483|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK153287|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	BC005578|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
mm9_v1_chr10_+_8604373_8604391	0.984468	AIRE.p2	AK010852|Sash1|70097|SAM and SH3 domain containing 1
mm9_v1_chr8_+_98057984_98058038	0.983755	AIRE.p2	AK077130|Ccdc113|244608|coiled-coil domain containing 113	NM_172914|Ccdc113|244608|coiled-coil domain containing 113	BC060957|Ccdc113|244608|coiled-coil domain containing 113	BC048506|Ccdc113|244608|coiled-coil domain containing 113
mm9_v1_chr13_-_113442508_113442517	0.98214	AIRE.p2	AK014844|Ddx4|13206|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	AK133366|Ddx4|13206|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	NM_001145885|Ddx4|13206|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	NM_010029|Ddx4|13206|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
mm9_v1_chr1_-_60155312_60155400	0.98194	AIRE.p2	AB041608|Wdr12|57750|WD repeat domain 12	NM_001199060|Wdr12|57750|WD repeat domain 12
mm9_v1_chr12_+_84866998_84867032	0.981614	AIRE.p2	NM_001165256|Dcaf4|73828|DDB1 and CUL4 associated factor 4	BC003284|Dcaf4|73828|DDB1 and CUL4 associated factor 4
mm9_v1_chr3_+_133899454_133899460	0.979044	AIRE.p2	BC065149|Cxxc4|319478|CXXC finger 4
mm9_v1_chr9_+_114640266_114640368	0.979026	AIRE.p2	AK171394|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK152723|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK152817|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK012941|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK150775|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK151092|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK151431|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK152448|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK153092|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	NM_026036|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK170905|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK159735|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK167854|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK128960|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK154481|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK167499|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK030885|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK145743|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	BC027248|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK165948|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK159439|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6
mm9_v1_chr6_-_40850379_40850385	0.974573	AIRE.p2	BC048599|BC048599|232717|cDNA sequence BC048599	AK075754|BC048599|232717|cDNA sequence BC048599	NM_175020|BC048599|232717|cDNA sequence BC048599
mm9_v1_chr13_-_41165827_41165833	0.974533	AIRE.p2	X66983|Mak|17152|male germ cell-associated kinase	NM_008547|Mak|17152|male germ cell-associated kinase
mm9_v1_chr3_+_138078450_138078473	0.972593	AIRE.p2	AK132994|Adh4|26876|alcohol dehydrogenase 4 (class II), pi polypeptide	NM_011996|Adh4|26876|alcohol dehydrogenase 4 (class II), pi polypeptide	AJ245750|Adh4|26876|alcohol dehydrogenase 4 (class II), pi polypeptide	BC100729|Adh4|26876|alcohol dehydrogenase 4 (class II), pi polypeptide	BC100736|Adh4|26876|alcohol dehydrogenase 4 (class II), pi polypeptide	BC100730|Adh4|26876|alcohol dehydrogenase 4 (class II), pi polypeptide
mm9_v1_chr3_-_104580464_104580464	0.972323	AIRE.p2	AK078681|Fam19a3|329731|family with sequence similarity 19, member A3	NM_183224|Fam19a3|329731|family with sequence similarity 19, member A3
mm9_v1_chr17_-_3082572_3082713	0.967208	AIRE.p2	
mm9_v1_chr16_+_48431349_48431418	0.963573	AIRE.p2	AF084945|Morc1|17450|microrchidia 1	NM_010816|Morc1|17450|microrchidia 1	BC030893|Morc1|17450|microrchidia 1
mm9_v1_chr14_+_67254087_67254180	0.963207	AIRE.p2	AK085653|Adra1a|11549|adrenergic receptor, alpha 1a	AK079597|Adra1a|11549|adrenergic receptor, alpha 1a	NM_013461|Adra1a|11549|adrenergic receptor, alpha 1a	AK050183|Adra1a|11549|adrenergic receptor, alpha 1a	AK042759|Adra1a|11549|adrenergic receptor, alpha 1a	AK138919|Adra1a|11549|adrenergic receptor, alpha 1a
mm9_v1_chr3_-_108692732_108692925	0.960809	AIRE.p2	BC111898|Fndc7|320181|fibronectin type III domain containing 7	BC113188|Fndc7|320181|fibronectin type III domain containing 7	AK053989|Fndc7|320181|fibronectin type III domain containing 7	AK054241|Fndc7|320181|fibronectin type III domain containing 7	NM_001165965|Fndc7|320181|fibronectin type III domain containing 7	NM_177091|Fndc7|320181|fibronectin type III domain containing 7
mm9_v1_chr5_+_33760994_33761117	0.960217	AIRE.p2	AK084585|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	AK163728|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene
mm9_v1_chr13_-_54570167_54570211	0.959598	AIRE.p2	BC019603|Thoc3|73666|THO complex 3	AK010668|Thoc3|73666|THO complex 3	NM_028597|Thoc3|73666|THO complex 3
mm9_v1_chr19_-_11765519_11765545	0.958662	AIRE.p2	BC100313|Oosp1|170834|oocyte secreted protein 1	AB086437|Oosp1|170834|oocyte secreted protein 1	AB050982|Oosp1|170834|oocyte secreted protein 1	AK033038|Oosp1|170834|oocyte secreted protein 1	AK162132|Oosp1|170834|oocyte secreted protein 1	NM_133353|Oosp1|170834|oocyte secreted protein 1	AF420487|Oosp1|170834|oocyte secreted protein 1
mm9_v1_chr19_+_41904459_41904605	0.950987	AIRE.p2	NM_008043|Frat1|14296|frequently rearranged in advanced T-cell lymphomas	AK015680|Frat1|14296|frequently rearranged in advanced T-cell lymphomas	BC140987|Frat1|14296|frequently rearranged in advanced T-cell lymphomas	U58974|Frat1|14296|frequently rearranged in advanced T-cell lymphomas
mm9_v1_chr17_+_34341417_34341460	0.948905	AIRE.p2	NM_011530|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK159200|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
mm9_v1_chr10_-_126700105_126700237	0.948693	AIRE.p2	AF067179|Kif5a|16572|kinesin family member 5A	AK147660|Kif5a|16572|kinesin family member 5A	BC058396|Kif5a|16572|kinesin family member 5A	AK147707|Kif5a|16572|kinesin family member 5A	BC027115|Kif5a|16572|kinesin family member 5A	AK147352|Kif5a|16572|kinesin family member 5A
mm9_v1_chr15_-_83197706_83197713	0.945525	AIRE.p2	AK132681|1700001L05Rik|69291|RIKEN cDNA 1700001L05 gene	BC099567|1700001L05Rik|69291|RIKEN cDNA 1700001L05 gene
mm9_v1_chr1_+_173612173_173612224	0.945019	AIRE.p2	X17501|Cd48|12506|CD48 antigen	X53526|Cd48|12506|CD48 antigen	AK007741|Cd48|12506|CD48 antigen	NM_007649|Cd48|12506|CD48 antigen	AK151601|Cd48|12506|CD48 antigen	AB196820|Cd48|12506|CD48 antigen	AB196821|Cd48|12506|CD48 antigen	AB196822|Cd48|12506|CD48 antigen	AB196823|Cd48|12506|CD48 antigen
mm9_v1_chr11_+_77796215_77796321	0.93968	AIRE.p2	AK170155|Phf12|268448|PHD finger protein 12	AK089226|Phf12|268448|PHD finger protein 12	AK010807|Phf12|268448|PHD finger protein 12	AK155354|Phf12|268448|PHD finger protein 12	AK053787|Phf12|268448|PHD finger protein 12	NM_174852|Phf12|268448|PHD finger protein 12
mm9_v1_chr3_+_63780058_63780135	0.938871	AIRE.p2	AK143197|Gmps|229363|guanine monophosphate synthetase	NM_001033300|Gmps|229363|guanine monophosphate synthetase	AK169701|Gmps|229363|guanine monophosphate synthetase	AK169043|Gmps|229363|guanine monophosphate synthetase	AK167857|Gmps|229363|guanine monophosphate synthetase	AK049755|Gmps|229363|guanine monophosphate synthetase	BC138411|Gmps|229363|guanine monophosphate synthetase	BC138412|Gmps|229363|guanine monophosphate synthetase	AK168239|Gmps|229363|guanine monophosphate synthetase
mm9_v1_chr18_-_46372017_46372260	0.936868	AIRE.p2	AY251389|Trim36|28105|tripartite motif-containing 36	AB103063|Trim36|28105|tripartite motif-containing 36	BC058106|Trim36|28105|tripartite motif-containing 36	NM_178872|Trim36|28105|tripartite motif-containing 36
mm9_v1_chr6_+_96063137_96063148	0.935139	AIRE.p2	AK050001|Fam19a1|320265|family with sequence similarity 19, member A1	NM_182808|Fam19a1|320265|family with sequence similarity 19, member A1
mm9_v1_chr4_+_116381526_116381534	0.928141	AIRE.p2	BC022718|Ccdc163|68394|coiled-coil domain containing 163	BC022733|Ccdc163|68394|coiled-coil domain containing 163	NM_026714|Ccdc163|68394|coiled-coil domain containing 163
mm9_v1_chr6_+_47827535_47827591	0.927409	AIRE.p2	NM_146175|Zfp282|101095|zinc finger protein 282	AK088531|Zfp282|101095|zinc finger protein 282	AK148038|Zfp282|101095|zinc finger protein 282
mm9_v1_chr12_+_16817741_16817769	0.927182	AIRE.p2	AK149061|E2f6|50496|E2F transcription factor 6
mm9_v1_chr5_+_69948162_69948312	0.92603	AIRE.p2	AK160956|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	NM_172711|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK032597|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK165012|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK084627|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK053420|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK140534|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	BC057962|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK047411|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)
mm9_v1_chr13_-_61037894_61037926	0.925762	AIRE.p2	AY034577|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha	X15591|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha	BC028437|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha	AK018801|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha	AK132290|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha	AK167433|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha	AK167664|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha	AK005471|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha	NM_001145799|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha
mm9_v1_chr4_+_154927385_154927543	0.925113	AIRE.p2	BC003294|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr16_-_95078278_95078296	0.92505	AIRE.p2	AB029502|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U51126|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	AK015481|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	NM_001025590|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6
mm9_v1_chr3_-_145770980_145771093	0.923771	AIRE.p2	AK029903|Wdr63|242253|WD repeat domain 63	NM_172864|Wdr63|242253|WD repeat domain 63	BC158119|Wdr63|242253|WD repeat domain 63
mm9_v1_chr7_+_51206036_51206051	0.921511	AIRE.p2	BC031798|Klk1b8|16624|kallikrein 1-related peptidase b8	NM_008457|Klk1b8|16624|kallikrein 1-related peptidase b8	X03994|Klk1b8|16624|kallikrein 1-related peptidase b8
mm9_v1_chr9_+_18282802_18282838	0.918848	AIRE.p2	AK018931|Mbd3l1|73503|methyl-CpG binding domain protein 3-like 1	BC049738|Mbd3l1|73503|methyl-CpG binding domain protein 3-like 1	BC061034|Mbd3l1|73503|methyl-CpG binding domain protein 3-like 1	AK006927|Mbd3l1|73503|methyl-CpG binding domain protein 3-like 1	NM_028557|Mbd3l1|73503|methyl-CpG binding domain protein 3-like 1
mm9_v1_chr3_+_55265811_55265928	0.916289	AIRE.p2	AF155821|Dclk1|13175|doublecortin-like kinase 1	AK032424|Dclk1|13175|doublecortin-like kinase 1	AK081200|Dclk1|13175|doublecortin-like kinase 1	AB073969|Dclk1|13175|doublecortin-like kinase 1	AK047716|Dclk1|13175|doublecortin-like kinase 1	AY968047|Dclk1|13175|doublecortin-like kinase 1	AY968048|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr2_-_175163697_175163736	0.914974	AIRE.p2	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001099349|Gm14308|100043381|predicted gene 14308	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr11_-_41813792_41813857	0.914354	AIRE.p2	AK047085|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK136889|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	NM_177408|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233775|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233776|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233777|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233778|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233779|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233780|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233781|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233782|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233783|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233784|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233785|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233786|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233787|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233788|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233789|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233790|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233791|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233792|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233793|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233794|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233795|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233796|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233797|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233798|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233799|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233800|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233801|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233802|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK141129|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK049857|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm9_v1_chr4_-_46579311_46579311	0.914212	AIRE.p2	AK030097|Coro2a|107684|coronin, actin binding protein 2A	NM_178893|Coro2a|107684|coronin, actin binding protein 2A
mm9_v1_chr2_-_66473008_66473018	0.913663	AIRE.p2	NM_018852|Scn9a|20274|sodium channel, voltage-gated, type IX, alpha	AK141871|Scn9a|20274|sodium channel, voltage-gated, type IX, alpha
mm9_v1_chr9_+_57385317_57385465	0.913291	AIRE.p2	AK028365|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene	NM_001166364|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene	NM_175273|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene	BC111883|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene	BC112403|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene
mm9_v1_chr9_-_48719069_48719203	0.913166	AIRE.p2	AY605711|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	AF513221|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	X72395|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	BC144799|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	BC145743|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	M74425|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	NM_001099644|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	NM_013561|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A
mm9_v1_chr12_+_80309899_80309933	0.912797	AIRE.p2	AK164157|Rdh12|77974|retinol dehydrogenase 12	AK039233|Rdh12|77974|retinol dehydrogenase 12	NM_030017|Rdh12|77974|retinol dehydrogenase 12	AK020927|Rdh12|77974|retinol dehydrogenase 12	BC016204|Rdh12|77974|retinol dehydrogenase 12	BC067213|Rdh12|77974|retinol dehydrogenase 12
mm9_v1_chr1_+_40522396_40522520	0.912783	AIRE.p2	AK089237|Il18r1|16182|interleukin 18 receptor 1	NM_001161842|Il18r1|16182|interleukin 18 receptor 1	AK170705|Il18r1|16182|interleukin 18 receptor 1	NM_001161843|Il18r1|16182|interleukin 18 receptor 1	BC023240|Il18r1|16182|interleukin 18 receptor 1
mm9_v1_chr10_+_127691240_127691249	0.912256	AIRE.p2	BC034832|Apon|28194|apolipoprotein N
mm9_v1_chr1_-_34617764_34617802	0.911053	AIRE.p2	AB008911|Prss40|21756|protease, serine, 40	AK132909|Prss40|21756|protease, serine, 40	NM_009356|Prss40|21756|protease, serine, 40	BC145989|Prss40|21756|protease, serine, 40
mm9_v1_chr9_+_124016886_124016921	0.910754	AIRE.p2	AK154590|Ccr2|12772|chemokine (C-C motif) receptor 2	NM_009915|Ccr2|12772|chemokine (C-C motif) receptor 2	U56819|Ccr2|12772|chemokine (C-C motif) receptor 2
mm9_v1_chr13_-_60904143_60904204	0.908789	AIRE.p2	BC147423|Ctsll3|70202|cathepsin L-like 3	BC147424|Ctsll3|70202|cathepsin L-like 3	AK145382|Ctsll3|70202|cathepsin L-like 3	NM_027344|Ctsll3|70202|cathepsin L-like 3
mm9_v1_chr2_-_169956719_169956719	0.908436	AIRE.p2	AK156475|Zfp217|228913|zinc finger protein 217	NM_001033299|Zfp217|228913|zinc finger protein 217
mm9_v1_chr1_+_93041665_93041717	0.904838	AIRE.p2	AK133355|Rbm44|329207|RNA binding motif protein 44	NM_001033408|Rbm44|329207|RNA binding motif protein 44	BC150950|Rbm44|329207|RNA binding motif protein 44
mm9_v1_chr11_-_75346554_75346608	0.904783	AIRE.p2	
mm9_v1_chrX_+_20374922_20374939	0.904089	AIRE.p2	AK034861|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog
mm9_v1_chr12_+_89192945_89192962	0.903581	AIRE.p2	AK145346|Oog1|193322|oogenesin 1	AK087852|Oog1|193322|oogenesin 1	AK135749|Oog1|193322|oogenesin 1	AK139641|Oog1|193322|oogenesin 1	AK143386|Oog1|193322|oogenesin 1	NM_178657|Oog1|193322|oogenesin 1	BC086484|Oog1|193322|oogenesin 1
mm9_v1_chr4_-_91066674_91066674	0.903172	AIRE.p2	BC049125|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	BC058393|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207685|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr7_-_93924317_93924373	0.900309	AIRE.p2	BC119604|Folh1|53320|folate hydrolase	BC119605|Folh1|53320|folate hydrolase	AK002920|Folh1|53320|folate hydrolase	AF026380|Folh1|53320|folate hydrolase	AK090289|Folh1|53320|folate hydrolase	NM_001159706|Folh1|53320|folate hydrolase	NM_016770|Folh1|53320|folate hydrolase
mm9_v1_chr17_-_23923163_23923198	0.897629	AIRE.p2	BC024947|Flywch2|76917|FLYWCH family member 2
mm9_v1_chr11_+_22872016_22872058	0.895613	AIRE.p2	NM_011663|Zrsr1|22183|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	D17407|Zrsr1|22183|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	S69507|Zrsr1|22183|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1
mm9_v1_chr6_-_132160538_132160538	0.895219	AIRE.p2	BC011176|Prb1|381833|proline-rich protein BstNI subfamily 1	NM_198669|Prb1|381833|proline-rich protein BstNI subfamily 1
mm9_v1_chr1_+_137914574_137914625	0.888003	AIRE.p2	NM_025439|Tmem9|66241|transmembrane protein 9	AK005248|Tmem9|66241|transmembrane protein 9	AK021225|Tmem9|66241|transmembrane protein 9	AK154423|Tmem9|66241|transmembrane protein 9	BC016524|Tmem9|66241|transmembrane protein 9	AK134909|Tmem9|66241|transmembrane protein 9	BC048017|Tmem9|66241|transmembrane protein 9	BC020291|Tmem9|66241|transmembrane protein 9
mm9_v1_chr18_-_36942673_36942858	0.885675	AIRE.p2	AK211613|Hars|15115|histidyl-tRNA synthetase	AK011685|Hars|15115|histidyl-tRNA synthetase	AK077437|Hars|15115|histidyl-tRNA synthetase	AK166826|Hars|15115|histidyl-tRNA synthetase	AK150081|Hars|15115|histidyl-tRNA synthetase	AK152329|Hars|15115|histidyl-tRNA synthetase	BC020088|Hars|15115|histidyl-tRNA synthetase	AK088824|Hars|15115|histidyl-tRNA synthetase	AK146922|Hars|15115|histidyl-tRNA synthetase	AK166892|Hars|15115|histidyl-tRNA synthetase	U39473|Hars|15115|histidyl-tRNA synthetase	NM_008214|Hars|15115|histidyl-tRNA synthetase
mm9_v1_chr15_+_97998090_97998244	0.885443	AIRE.p2	AK080988|AI836003|239650|expressed sequence AI836003	NM_177716|AI836003|239650|expressed sequence AI836003
mm9_v1_chr13_+_104711339_104711339	0.883876	AIRE.p2	AK083877|D130037M23Rik|328330|RIKEN cDNA D130037M23 gene
mm9_v1_chr5_-_141178143_141178224	0.883596	AIRE.p2	AK006472|Iqce|74239|IQ motif containing E	BC065128|Iqce|74239|IQ motif containing E
mm9_v1_chr4_+_58298833_58298983	0.881563	AIRE.p2	NM_001037127|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037128|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037129|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037130|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001165996|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_010944|Musk|18198|muscle, skeletal, receptor tyrosine kinase	U37708|Musk|18198|muscle, skeletal, receptor tyrosine kinase	U37709|Musk|18198|muscle, skeletal, receptor tyrosine kinase	BC100342|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY360453|Musk|18198|muscle, skeletal, receptor tyrosine kinase	X86444|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955296|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955297|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955298|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY956403|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY956404|Musk|18198|muscle, skeletal, receptor tyrosine kinase
mm9_v1_chr13_+_4573320_4573394	0.881313	AIRE.p2	AK020439|Akr1c21|77337|aldo-keto reductase family 1, member C21	NM_029901|Akr1c21|77337|aldo-keto reductase family 1, member C21	BC061057|Akr1c21|77337|aldo-keto reductase family 1, member C21	BC013531|Akr1c21|77337|aldo-keto reductase family 1, member C21	BC091761|Akr1c21|77337|aldo-keto reductase family 1, member C21	AB178898|Akr1c21|77337|aldo-keto reductase family 1, member C21	AY742217|Akr1c21|77337|aldo-keto reductase family 1, member C21
mm9_v1_chr8_-_113426341_113426387	0.877421	AIRE.p2	AK140503|Fuk|234730|fucokinase	AK164340|Fuk|234730|fucokinase	AJ297482|Fuk|234730|fucokinase	AJ534942|Fuk|234730|fucokinase	AY223865|Fuk|234730|fucokinase	NM_172283|Fuk|234730|fucokinase	NM_181666|Fuk|234730|fucokinase	AK161763|Fuk|234730|fucokinase
mm9_v1_chr4_+_101659444_101659444	0.877046	AIRE.p2	NM_001085520|Gm12789|381536|predicted gene 12789
mm9_v1_chr16_-_36562219_36562219	0.876836	AIRE.p2	AF110178|Casr|12374|calcium-sensing receptor	AF110179|Casr|12374|calcium-sensing receptor	NM_013803|Casr|12374|calcium-sensing receptor
mm9_v1_chr13_-_21494549_21494625	0.876683	AIRE.p2	BC007473|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	AK031286|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	AK031080|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	AK050028|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	AK028902|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	NM_001145778|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	NM_023685|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3
mm9_v1_chr10_-_53349752_53349783	0.87369	AIRE.p2	AK139112|Mcm9|71567|minichromosome maintenance complex component 9	AK046636|Mcm9|71567|minichromosome maintenance complex component 9
mm9_v1_chr6_-_115201790_115201797	0.87283	AIRE.p2	AF282730|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr17_-_18414529_18414529	0.872149	AIRE.p2	NM_001104543|Vmn2r94|665227|vomeronasal 2, receptor 94
mm9_v1_chrX_+_147024463_147024599	0.870693	AIRE.p2	AK132629|Pfkfb1|18639|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	NM_008824|Pfkfb1|18639|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	BC132561|Pfkfb1|18639|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	BC132563|Pfkfb1|18639|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm9_v1_chr9_-_88987672_88987672	0.866692	AIRE.p2	NM_001170884|Trim43b|666747|tripartite motif-containing 43B
mm9_v1_chr5_+_135845811_135845865	0.865322	AIRE.p2	AK079400|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	NM_145414|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AK156651|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AF412029|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AK149521|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5
mm9_v1_chr18_-_68588897_68588973	0.865213	AIRE.p2	AK033100|Mc2r|17200|melanocortin 2 receptor	NM_008560|Mc2r|17200|melanocortin 2 receptor	D85688|Mc2r|17200|melanocortin 2 receptor
mm9_v1_chr17_-_40931024_40931046	0.862765	AIRE.p2	AK018856|Crisp2|22024|cysteine-rich secretory protein 2	M25533|Crisp2|22024|cysteine-rich secretory protein 2	NM_009420|Crisp2|22024|cysteine-rich secretory protein 2	BC049615|Crisp2|22024|cysteine-rich secretory protein 2
mm9_v1_chr8_-_46347384_46347394	0.861996	AIRE.p2	AK005546|F11|109821|coagulation factor XI	NM_028066|F11|109821|coagulation factor XI
mm9_v1_chr13_-_53024983_53025057	0.861245	AIRE.p2	BC026525|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK134886|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK019978|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK003219|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK003929|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK169661|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	BC049597|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	NM_016709|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK147855|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase
mm9_v1_chr7_+_51231430_51231466	0.85791	AIRE.p2	M17962|Klk1b9|13648|kallikrein 1-related peptidase b9	NM_010116|Klk1b9|13648|kallikrein 1-related peptidase b9	BC024624|Klk1b9|13648|kallikrein 1-related peptidase b9	BC048869|Klk1b9|13648|kallikrein 1-related peptidase b9
mm9_v1_chr16_-_93603971_93604059	0.8557	AIRE.p2	BC029101|Setd4|224440|SET domain containing 4	AY037804|Setd4|224440|SET domain containing 4	NM_145482|Setd4|224440|SET domain containing 4
mm9_v1_chr13_+_33096402_33096415	0.855577	AIRE.p2	AK161581|Serpinb9|20723|serine (or cysteine) peptidase inhibitor, clade B, member 9	NM_009256|Serpinb9|20723|serine (or cysteine) peptidase inhibitor, clade B, member 9
mm9_v1_chr8_-_87461251_87461273	0.854152	AIRE.p2	BC054524|Mast1|56527|microtubule associated serine/threonine kinase 1	NM_019945|Mast1|56527|microtubule associated serine/threonine kinase 1	AK141034|Mast1|56527|microtubule associated serine/threonine kinase 1
mm9_v1_chrX_-_8038851_8038851	0.853956	AIRE.p2	AK076879|Ssxb2|387132|synovial sarcoma, X member B, breakpoint 2	AY244793|Ssxb2|387132|synovial sarcoma, X member B, breakpoint 2	BC048441|Ssxb2|387132|synovial sarcoma, X member B, breakpoint 2	BC089478|Ssxb2|387132|synovial sarcoma, X member B, breakpoint 2	NM_001001450|Ssxb2|387132|synovial sarcoma, X member B, breakpoint 2	NM_001134226|Ssxb2|387132|synovial sarcoma, X member B, breakpoint 2
mm9_v1_chr13_+_27248667_27248686	0.852046	AIRE.p2	AF525161|Prl3d3|215029|prolactin family 3, subfamily d, member 3	NM_172156|Prl3d3|215029|prolactin family 3, subfamily d, member 3	BC068253|Prl3d3|215029|prolactin family 3, subfamily d, member 3
mm9_v1_chr17_+_34053120_34053173	0.849945	AIRE.p2	NM_020625|Zbtb22|81630|zinc finger and BTB domain containing 22	AK157161|Zbtb22|81630|zinc finger and BTB domain containing 22	AK159082|Zbtb22|81630|zinc finger and BTB domain containing 22	AK159789|Zbtb22|81630|zinc finger and BTB domain containing 22	AK155199|Zbtb22|81630|zinc finger and BTB domain containing 22	BC026964|Zbtb22|81630|zinc finger and BTB domain containing 22	BC052154|Zbtb22|81630|zinc finger and BTB domain containing 22
mm9_v1_chr10_+_73284612_73284690	0.843556	AIRE.p2	NM_001142735|Pcdh15|11994|protocadherin 15	NM_001142736|Pcdh15|11994|protocadherin 15	NM_001142737|Pcdh15|11994|protocadherin 15	NM_001142738|Pcdh15|11994|protocadherin 15	NM_001142739|Pcdh15|11994|protocadherin 15	NM_001142740|Pcdh15|11994|protocadherin 15	NM_001142741|Pcdh15|11994|protocadherin 15	NM_001142742|Pcdh15|11994|protocadherin 15	NM_001142743|Pcdh15|11994|protocadherin 15	NM_001142746|Pcdh15|11994|protocadherin 15	NM_001142747|Pcdh15|11994|protocadherin 15	NM_001142748|Pcdh15|11994|protocadherin 15	NM_001142760|Pcdh15|11994|protocadherin 15	NM_023115|Pcdh15|11994|protocadherin 15	AF281899|Pcdh15|11994|protocadherin 15	AY949849|Pcdh15|11994|protocadherin 15	DQ354396|Pcdh15|11994|protocadherin 15	DQ354397|Pcdh15|11994|protocadherin 15	DQ354398|Pcdh15|11994|protocadherin 15	DQ354399|Pcdh15|11994|protocadherin 15	DQ354400|Pcdh15|11994|protocadherin 15	DQ354401|Pcdh15|11994|protocadherin 15	DQ354402|Pcdh15|11994|protocadherin 15	DQ354403|Pcdh15|11994|protocadherin 15	DQ354404|Pcdh15|11994|protocadherin 15	DQ354405|Pcdh15|11994|protocadherin 15	DQ354406|Pcdh15|11994|protocadherin 15	DQ354407|Pcdh15|11994|protocadherin 15	DQ354408|Pcdh15|11994|protocadherin 15	DQ354409|Pcdh15|11994|protocadherin 15	DQ354410|Pcdh15|11994|protocadherin 15	DQ354411|Pcdh15|11994|protocadherin 15	DQ354412|Pcdh15|11994|protocadherin 15	DQ354413|Pcdh15|11994|protocadherin 15	DQ354414|Pcdh15|11994|protocadherin 15	DQ354415|Pcdh15|11994|protocadherin 15	AK139154|Pcdh15|11994|protocadherin 15	DQ354416|Pcdh15|11994|protocadherin 15	DQ354417|Pcdh15|11994|protocadherin 15	DQ354418|Pcdh15|11994|protocadherin 15
mm9_v1_chr5_-_94100392_94100534	0.842512	AIRE.p2	BC085232|C87414|381654|expressed sequence C87414	AK163343|C87414|381654|expressed sequence C87414	NM_001164284|C87414|381654|expressed sequence C87414	NM_001164285|C87414|381654|expressed sequence C87414	AK139835|C87414|381654|expressed sequence C87414
mm9_v1_chr4_-_126738303_126738384	0.840588	AIRE.p2	BC064774|Zmym1|68310|zinc finger, MYM domain containing 1	AK138687|Zmym1|68310|zinc finger, MYM domain containing 1	AK166769|Zmym1|68310|zinc finger, MYM domain containing 1	AK049568|Zmym1|68310|zinc finger, MYM domain containing 1	AK035618|Zmym1|68310|zinc finger, MYM domain containing 1	NM_026670|Zmym1|68310|zinc finger, MYM domain containing 1	AK167508|Zmym1|68310|zinc finger, MYM domain containing 1	AK016783|Zmym1|68310|zinc finger, MYM domain containing 1	AK044538|Zmym1|68310|zinc finger, MYM domain containing 1
mm9_v1_chr3_+_102877936_102877949	0.836012	AIRE.p2	NM_001033303|Ampd1|229665|adenosine monophosphate deaminase 1	AK137549|Ampd1|229665|adenosine monophosphate deaminase 1	AK132524|Ampd1|229665|adenosine monophosphate deaminase 1
mm9_v1_chr13_+_67964262_67964324	0.835645	AIRE.p2	AK133011|BC048507|408058|cDNA sequence BC048507	BC048507|BC048507|408058|cDNA sequence BC048507	NM_001001185|BC048507|408058|cDNA sequence BC048507
mm9_v1_chr2_-_112099427_112099447	0.832557	AIRE.p2	BC125332|BC125332|213765|cDNA sequence BC125332	BC125334|BC125332|213765|cDNA sequence BC125332	AK077049|BC125332|213765|cDNA sequence BC125332	NM_172521|BC125332|213765|cDNA sequence BC125332
mm9_v1_chrX_+_136916509_136916509	0.829665	AIRE.p2	AK047241|Frmpd3|245643|FERM and PDZ domain containing 3	NM_177750|Frmpd3|245643|FERM and PDZ domain containing 3
mm9_v1_chr11_+_87569075_87569079	0.827724	AIRE.p2	AK020764|A430104N18Rik|78591|RIKEN cDNA A430104N18 gene
mm9_v1_chr9_+_57981881_57981881	0.82646	AIRE.p2	NM_001162476|Stra6|20897|stimulated by retinoic acid gene 6
mm9_v1_chr2_-_143688908_143688908	0.824728	AIRE.p2	BC057580|Bfsp1|12075|beaded filament structural protein 1, in lens-CP94	NM_009751|Bfsp1|12075|beaded filament structural protein 1, in lens-CP94
mm9_v1_chr4_-_6381171_6381368	0.823292	AIRE.p2	AK134518|Nsmaf|18201|neutral sphingomyelinase (N-SMase) activation associated factor	BC145961|Nsmaf|18201|neutral sphingomyelinase (N-SMase) activation associated factor	BC145963|Nsmaf|18201|neutral sphingomyelinase (N-SMase) activation associated factor	AK147709|Nsmaf|18201|neutral sphingomyelinase (N-SMase) activation associated factor
mm9_v1_chr3_-_92242684_92242702	0.823248	AIRE.p2	X91825|Sprr1b|20754|small proline-rich protein 1B	BC119288|Sprr1b|20754|small proline-rich protein 1B	BC119290|Sprr1b|20754|small proline-rich protein 1B	AK003398|Sprr1b|20754|small proline-rich protein 1B	AK009752|Sprr1b|20754|small proline-rich protein 1B	NM_009265|Sprr1b|20754|small proline-rich protein 1B
mm9_v1_chr12_+_85379311_85379384	0.822638	AIRE.p2	AK046630|Acot4|171282|acyl-CoA thioesterase 4	NM_134247|Acot4|171282|acyl-CoA thioesterase 4	AK080883|Acot4|171282|acyl-CoA thioesterase 4	AK050420|Acot4|171282|acyl-CoA thioesterase 4	BC113185|Acot4|171282|acyl-CoA thioesterase 4
mm9_v1_chr5_-_145962668_145962756	0.820637	AIRE.p2	BC099448|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	BC141244|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	U62906|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	BC027512|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	AK153972|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	AK013258|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	AK009842|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	AK138775|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	NM_023322|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14
mm9_v1_chr7_-_51745554_51745568	0.819869	AIRE.p2	
mm9_v1_chr2_-_4544898_4544915	0.818258	AIRE.p2	BC019370|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)
mm9_v1_chr16_+_32271553_32271694	0.817779	AIRE.p2	AK009281|2310010M20Rik|69576|RIKEN cDNA 2310010M20 gene	NM_183283|2310010M20Rik|69576|RIKEN cDNA 2310010M20 gene
mm9_v1_chr2_-_118375365_118375421	0.81592	AIRE.p2	AK040622|Bmf|171543|BCL2 modifying factor	AK169903|Bmf|171543|BCL2 modifying factor	NM_138313|Bmf|171543|BCL2 modifying factor	AK084658|Bmf|171543|BCL2 modifying factor
mm9_v1_chr11_+_78312621_78312770	0.811159	AIRE.p2	NM_011707|Vtn|22370|vitronectin	AK011736|Vtn|22370|vitronectin	AK090325|Vtn|22370|vitronectin	AK167494|Vtn|22370|vitronectin
mm9_v1_chr12_-_89420210_89420337	0.81042	AIRE.p2	BC094894|Gm10436|100039315|predicted gene 10436	AK139576|Gm10436|100039315|predicted gene 10436	NM_001105254|Gm10436|100039315|predicted gene 10436
mm9_v1_chr12_+_72212414_72212430	0.808185	AIRE.p2	BC048520|Tomm20l|75266|translocase of outer mitochondrial membrane 20 homolog (yeast)-like	NM_029227|Tomm20l|75266|translocase of outer mitochondrial membrane 20 homolog (yeast)-like	AK016101|Tomm20l|75266|translocase of outer mitochondrial membrane 20 homolog (yeast)-like
mm9_v1_chr7_+_50469408_50469408	0.807629	AIRE.p2	EU599041|EU599041|100170401|expressed sequence EU599041	EU599042|EU599041|100170401|expressed sequence EU599041	NM_001177525|EU599041|100170401|expressed sequence EU599041
mm9_v1_chr2_+_176266744_176266783	0.806018	AIRE.p2	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	NM_001099349|Gm14308|100043381|predicted gene 14308	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr10_-_12581443_12581532	0.805409	AIRE.p2	Y12229|Utrn|22288|utrophin	NM_011682|Utrn|22288|utrophin
mm9_v1_chr2_-_18314387_18314456	0.80501	AIRE.p2	AK144228|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	BC080300|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	AK133582|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	AK012505|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	NM_001190817|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	NM_007869|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1
mm9_v1_chr7_-_3169082_3169203	0.804261	AIRE.p2	BC050126|AU018091|245128|expressed sequence AU018091	AB201954|AU018091|245128|expressed sequence AU018091	BC080735|AU018091|245128|expressed sequence AU018091	NM_001004153|AU018091|245128|expressed sequence AU018091
mm9_v1_chr7_+_29222465_29222512	0.804167	AIRE.p2	AK002834|Gmfg|63986|glia maturation factor, gamma	AK014214|Gmfg|63986|glia maturation factor, gamma	NM_022024|Gmfg|63986|glia maturation factor, gamma	AF297221|Gmfg|63986|glia maturation factor, gamma	BC011488|Gmfg|63986|glia maturation factor, gamma
mm9_v1_chr7_+_27220131_27220231	0.803021	AIRE.p2	AK087843|Nlrp4a|243880|NLR family, pyrin domain containing 4A	AY355341|Nlrp4a|243880|NLR family, pyrin domain containing 4A	NM_172896|Nlrp4a|243880|NLR family, pyrin domain containing 4A	BC141342|Nlrp4a|243880|NLR family, pyrin domain containing 4A	BC141343|Nlrp4a|243880|NLR family, pyrin domain containing 4A
mm9_v1_chr10_+_33577526_33577529	0.801087	AIRE.p2	AF026075|Sult3a1|57430|sulfotransferase family 3A, member 1	BC125593|Sult3a1|57430|sulfotransferase family 3A, member 1	BC125595|Sult3a1|57430|sulfotransferase family 3A, member 1	NM_020565|Sult3a1|57430|sulfotransferase family 3A, member 1
mm9_v1_chr4_+_141302635_141302765	0.80095	AIRE.p2	AK017155|Agmat|75986|agmatine ureohydrolase (agmatinase)	BC115693|Agmat|75986|agmatine ureohydrolase (agmatinase)
mm9_v1_chr3_+_95733228_95733353	0.798448	AIRE.p2	U89345|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK168380|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	BC080684|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	BC005690|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK202920|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK076049|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm9_v1_chr4_-_120597563_120597650	0.798332	AIRE.p2	BC023360|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)	AK014134|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)	NM_001160043|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)	NM_028457|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)
mm9_v1_chrX_+_34971918_34972062	0.796005	AIRE.p2	AJ972669|Rhox4e|194856|reproductive homeobox 4E	NM_201236|Rhox4e|194856|reproductive homeobox 4E	BC094891|Rhox4e|194856|reproductive homeobox 4E	BC172128|Rhox4e|194856|reproductive homeobox 4E
mm9_v1_chr11_+_79498993_79499001	0.794413	AIRE.p2	AK122559|Rab11fip4|268451|RAB11 family interacting protein 4 (class II)
mm9_v1_chr8_-_86217895_86217983	0.794103	AIRE.p2	AK150062|Pkn1|320795|protein kinase N1	AK149649|Pkn1|320795|protein kinase N1	AK089431|Pkn1|320795|protein kinase N1	AK171297|Pkn1|320795|protein kinase N1
mm9_v1_chr2_-_175261262_175261335	0.792897	AIRE.p2	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001099349|Gm14308|100043381|predicted gene 14308	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK039408|Gm4724|100043915|predicted gene 4724
mm9_v1_chr6_+_142563114_142563114	0.791354	AIRE.p2	AK019938|5330439B14Rik|321015|RIKEN cDNA 5330439B14 gene	NM_177314|5330439B14Rik|321015|RIKEN cDNA 5330439B14 gene
mm9_v1_chr12_-_57714253_57714270	0.790038	AIRE.p2	BC150762|Nkx2-9|18094|NK2 transcription factor related, locus 9 (Drosophila)	Y15741|Nkx2-9|18094|NK2 transcription factor related, locus 9 (Drosophila)	NM_008701|Nkx2-9|18094|NK2 transcription factor related, locus 9 (Drosophila)
mm9_v1_chr13_-_21875234_21875270	0.789814	AIRE.p2	BC107287|Hist1h3i|319153|histone cluster 1, H3i	BC127148|Hist1h3i|319153|histone cluster 1, H3i	BC116383|Hist1h3i|319153|histone cluster 1, H3i	AK155722|Hist1h3i|319153|histone cluster 1, H3i	NM_178207|Hist1h3i|319153|histone cluster 1, H3i
mm9_v1_chr2_+_164286416_164286607	0.789369	AIRE.p2	AK007882|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	NM_025575|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK139605|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK011753|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK003071|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK013220|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK032073|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK009684|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK075770|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK005510|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK148305|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK005249|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
mm9_v1_chr8_+_75247184_75247186	0.788604	AIRE.p2	AK146847|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	AK159076|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	AK169433|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	NM_001113248|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	NM_009188|Sin3b|20467|transcriptional regulator, SIN3B (yeast)
mm9_v1_chr4_-_143802891_143802919	0.786379	AIRE.p2	BC094895|C87977|97187|expressed sequence C87977	AK139502|C87977|97187|expressed sequence C87977	NM_001177542|C87977|97187|expressed sequence C87977
mm9_v1_chr5_+_30062437_30062485	0.786214	AIRE.p2	NM_001037940|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	NM_001037941|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	NM_001127367|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	NM_011847|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK134387|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6
mm9_v1_chrY_+_2156898_2156920	0.786168	AIRE.p2	AK016258|Rbmy1a1|19657|RNA binding motif protein, Y chromosome, family 1, member A1	NM_001166384|Rbmy1a1|19657|RNA binding motif protein, Y chromosome, family 1, member A1	NM_011253|Rbmy1a1|19657|RNA binding motif protein, Y chromosome, family 1, member A1	BC150670|Rbmy1a1|19657|RNA binding motif protein, Y chromosome, family 1, member A1	Y15131|Rbmy1a1|19657|RNA binding motif protein, Y chromosome, family 1, member A1	U36929|Rbmy1a1|19657|RNA binding motif protein, Y chromosome, family 1, member A1
mm9_v1_chr19_+_6184321_6184495	0.785593	AIRE.p2	AK028710|1700123I01Rik|622554|RIKEN cDNA 1700123I01 gene	AK007250|1700123I01Rik|622554|RIKEN cDNA 1700123I01 gene	NM_001165919|1700123I01Rik|622554|RIKEN cDNA 1700123I01 gene	BC138005|1700123I01Rik|622554|RIKEN cDNA 1700123I01 gene	BC145092|1700123I01Rik|622554|RIKEN cDNA 1700123I01 gene
mm9_v1_chr6_-_51416921_51416984	0.7812	AIRE.p2	BC059107|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chrX_+_20937988_20937991	0.778404	AIRE.p2	AK032684|Gm5124|331392|predicted pseudogene 5124	NM_198633|Gm5124|331392|predicted pseudogene 5124
mm9_v1_chr17_-_13185014_13185022	0.77833	AIRE.p2	AK156334|Wtap|60532|Wilms' tumour 1-associating protein
mm9_v1_chr3_+_41359653_41359655	0.777432	AIRE.p2	AK049332|Phf17|269424|PHD finger protein 17	NM_001130184|Phf17|269424|PHD finger protein 17
mm9_v1_chr12_+_110834872_110834878	0.776625	AIRE.p2	AK038654|1110006E14Rik|76286|RIKEN cDNA 1110006E14 gene
mm9_v1_chr7_-_25022472_25022616	0.776525	AIRE.p2	AF167316|Zfp109|56869|zinc finger protein 109	NM_020262|Zfp109|56869|zinc finger protein 109
mm9_v1_chr2_+_91570304_91570382	0.775432	AIRE.p2	AK148887|Ambra1|228361|autophagy/beclin 1 regulator 1	AK084557|Ambra1|228361|autophagy/beclin 1 regulator 1	AK155513|Ambra1|228361|autophagy/beclin 1 regulator 1	AK037516|Ambra1|228361|autophagy/beclin 1 regulator 1	AK083596|Ambra1|228361|autophagy/beclin 1 regulator 1	AK169280|Ambra1|228361|autophagy/beclin 1 regulator 1	BC054082|Ambra1|228361|autophagy/beclin 1 regulator 1	BC032293|Ambra1|228361|autophagy/beclin 1 regulator 1
mm9_v1_chr12_+_34079718_34079950	0.775431	AIRE.p2	AK015697|Efcab10|75040|EF-hand calcium binding domain 10	BC099564|Efcab10|75040|EF-hand calcium binding domain 10	NM_029152|Efcab10|75040|EF-hand calcium binding domain 10	BC119387|Efcab10|75040|EF-hand calcium binding domain 10	BC120662|Efcab10|75040|EF-hand calcium binding domain 10
mm9_v1_chrY_+_2188491_2188510	0.773291	AIRE.p2	AK016258|Rbmy1a1|19657|RNA binding motif protein, Y chromosome, family 1, member A1	NM_001166384|Rbmy1a1|19657|RNA binding motif protein, Y chromosome, family 1, member A1	NM_011253|Rbmy1a1|19657|RNA binding motif protein, Y chromosome, family 1, member A1	Y15131|Rbmy1a1|19657|RNA binding motif protein, Y chromosome, family 1, member A1
mm9_v1_chr13_-_61304752_61304770	0.772531	AIRE.p2	AF223401|Cts6|58518|cathepsin 6	NM_021445|Cts6|58518|cathepsin 6	BC099455|Cts6|58518|cathepsin 6	AY014781|Cts6|58518|cathepsin 6	AK005518|Cts6|58518|cathepsin 6
mm9_v1_chr7_-_67285104_67285104	0.772454	AIRE.p2	NM_001082962|Snrpn|20646|small nuclear ribonucleoprotein N
mm9_v1_chr17_-_33783578_33783579	0.771709	AIRE.p2	AK150477|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M
mm9_v1_chr11_-_97879685_97879687	0.7695	AIRE.p2	AK036404|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	NM_001159320|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit
mm9_v1_chr11_+_67051128_67051361	0.769056	AIRE.p2	DQ066415|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066416|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066417|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	AK138608|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	AY963801|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066418|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle
mm9_v1_chrX_-_45945309_45945309	0.76724	AIRE.p2	BC063775|Zfp280c|208968|zinc finger protein 280C	NM_153532|Zfp280c|208968|zinc finger protein 280C
mm9_v1_chrX_+_38754605_38754612	0.765551	AIRE.p2	BC076584|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr13_-_64190493_64190508	0.765074	AIRE.p2	U66827|Hsd17b3|15487|hydroxysteroid (17-beta) dehydrogenase 3	NM_008291|Hsd17b3|15487|hydroxysteroid (17-beta) dehydrogenase 3
mm9_v1_chr10_+_92916131_92916143	0.765045	AIRE.p2	AK005161|Lta4h|16993|leukotriene A4 hydrolase	NM_008517|Lta4h|16993|leukotriene A4 hydrolase
mm9_v1_chr7_+_11591093_11591093	0.759129	AIRE.p2	BC050218|Zscan4c|245109|zinc finger and SCAN domain containing 4C	NM_001013765|Zscan4c|245109|zinc finger and SCAN domain containing 4C
mm9_v1_chr13_-_55201655_55201679	0.758804	AIRE.p2	AK052704|Uimc1|20184|ubiquitin interaction motif containing 1	NM_011307|Uimc1|20184|ubiquitin interaction motif containing 1	AK078206|Uimc1|20184|ubiquitin interaction motif containing 1	AK161177|Uimc1|20184|ubiquitin interaction motif containing 1	AK160926|Uimc1|20184|ubiquitin interaction motif containing 1
mm9_v1_chr5_+_138635541_138635706	0.756327	AIRE.p2	AK049381|Mblac1|330216|metallo-beta-lactamase domain containing 1	NM_177878|Mblac1|330216|metallo-beta-lactamase domain containing 1	BC038925|Mblac1|330216|metallo-beta-lactamase domain containing 1
mm9_v1_chr9_-_67680136_67680136	0.756285	AIRE.p2	NM_001163143|C2cd4a|244911|C2 calcium-dependent domain containing 4A
mm9_v1_chr10_+_19076344_19076344	0.756156	AIRE.p2	NM_053008|Olig3|94222|oligodendrocyte transcription factor 3
mm9_v1_chr10_+_127691166_127691233	0.755893	AIRE.p2	NM_133996|Apon|28194|apolipoprotein N	AK083289|Apon|28194|apolipoprotein N
mm9_v1_chr7_+_19967358_19967392	0.754648	AIRE.p2	AK141692|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK082323|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK145969|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK082761|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	NM_007949|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	BC034517|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2
mm9_v1_chr3_-_86803173_86803261	0.753943	AIRE.p2	FJ594117|Cd1d1|12479|CD1d1 antigen	AK002582|Cd1d1|12479|CD1d1 antigen	BC055902|Cd1d1|12479|CD1d1 antigen	M63695|Cd1d1|12479|CD1d1 antigen	NM_007639|Cd1d1|12479|CD1d1 antigen
mm9_v1_chr8_-_5105158_5105231	0.753271	AIRE.p2	D87059|Slc10a2|20494|solute carrier family 10, member 2	BC120703|Slc10a2|20494|solute carrier family 10, member 2	BC125290|Slc10a2|20494|solute carrier family 10, member 2	AB002693|Slc10a2|20494|solute carrier family 10, member 2	AY529655|Slc10a2|20494|solute carrier family 10, member 2	AY529656|Slc10a2|20494|solute carrier family 10, member 2	NM_011388|Slc10a2|20494|solute carrier family 10, member 2
mm9_v1_chr2_+_175737015_175737088	0.752792	AIRE.p2	AK039408|Gm4724|100043915|predicted gene 4724	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	NM_001099349|Gm14308|100043381|predicted gene 14308	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr19_-_8955377_8955422	0.750522	AIRE.p2	AK131892|AI462493|107197|expressed sequence AI462493	AY941793|AI462493|107197|expressed sequence AI462493	AK131602|AI462493|107197|expressed sequence AI462493	AK132116|AI462493|107197|expressed sequence AI462493	NM_001160356|AI462493|107197|expressed sequence AI462493
mm9_v1_chr4_+_132776723_132776800	0.750463	AIRE.p2	NM_027152|Cd164l2|69655|CD164 sialomucin-like 2	AK139809|Cd164l2|69655|CD164 sialomucin-like 2	AK009888|Cd164l2|69655|CD164 sialomucin-like 2	BC111824|Cd164l2|69655|CD164 sialomucin-like 2
mm9_v1_chrX_-_35065833_35065833	0.749156	AIRE.p2	AJ972671|Rhox4g|664608|reproductive homeobox 4G	NM_001039698|Rhox4g|664608|reproductive homeobox 4G
mm9_v1_chr11_-_81387006_81387040	0.749069	AIRE.p2	BC139179|1700071K01Rik|237880|RIKEN cDNA 1700071K01 gene	BC139181|1700071K01Rik|237880|RIKEN cDNA 1700071K01 gene	AK131752|1700071K01Rik|237880|RIKEN cDNA 1700071K01 gene	NM_001033765|1700071K01Rik|237880|RIKEN cDNA 1700071K01 gene
mm9_v1_chr6_-_82889694_82889743	0.748939	AIRE.p2	AB021291|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC057048|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC090625|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK047067|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC094567|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK035993|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK143196|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	NM_001113481|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	NM_011350|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm9_v1_chr17_+_71168939_71168940	0.746861	AIRE.p2	AK034215|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr8_-_87461220_87461246	0.74567	AIRE.p2	AF077818|Mast1|56527|microtubule associated serine/threonine kinase 1
mm9_v1_chr9_+_43877511_43877533	0.743789	AIRE.p2	NM_016808|Usp2|53376|ubiquitin specific peptidase 2	BC017517|Usp2|53376|ubiquitin specific peptidase 2	AY255640|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr6_-_88396477_88396541	0.742632	AIRE.p2	AF268871|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	AF283518|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	BC099675|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	AK147924|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	BC024915|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	AK171885|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	AK028424|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	AK087501|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	NM_023060|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific
mm9_v1_chr18_+_37493599_37493681	0.740616	AIRE.p2	BC150716|Pcdhb6|93877|protocadherin beta 6	AY013788|Pcdhb6|93877|protocadherin beta 6	NM_053131|Pcdhb6|93877|protocadherin beta 6
mm9_v1_chr1_+_145587576_145587576	0.739703	AIRE.p2	AK142654|Glrx2|69367|glutaredoxin 2 (thioltransferase)	NM_001038594|Glrx2|69367|glutaredoxin 2 (thioltransferase)
mm9_v1_chr2_+_69588414_69588564	0.739633	AIRE.p2	AK079931|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	AK045812|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chr8_+_3641684_3641749	0.734385	AIRE.p2	AK196224|Stxbp2|20911|syntaxin binding protein 2
mm9_v1_chr2_-_25070107_25070150	0.731379	AIRE.p2	AK029738|4933433C11Rik|74472|RIKEN cDNA 4933433C11 gene	BC132286|4933433C11Rik|74472|RIKEN cDNA 4933433C11 gene	BC138006|4933433C11Rik|74472|RIKEN cDNA 4933433C11 gene	NM_028961|4933433C11Rik|74472|RIKEN cDNA 4933433C11 gene	AK017033|4933433C11Rik|74472|RIKEN cDNA 4933433C11 gene
mm9_v1_chr13_+_109444370_109444370	0.730037	AIRE.p2	AF536978|Pde4d|238871|phosphodiesterase 4D, cAMP specific	NM_011056|Pde4d|238871|phosphodiesterase 4D, cAMP specific
mm9_v1_chr4_-_57314708_57314708	0.729075	AIRE.p2	AK052928|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3	NM_011207|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3
mm9_v1_chr2_-_26092876_26092939	0.726196	AIRE.p2	AK157992|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	AK140324|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	AK165642|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	BC030934|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	NM_153559|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2
mm9_v1_chr14_-_64162744_64162804	0.725811	AIRE.p2	BC046275|Mtmr9|210376|myotubularin related protein 9	NM_177594|Mtmr9|210376|myotubularin related protein 9	AK035026|Mtmr9|210376|myotubularin related protein 9
mm9_v1_chr3_+_3508029_3508207	0.724239	AIRE.p2	AK143816|Hnf4g|30942|hepatocyte nuclear factor 4, gamma	NM_013920|Hnf4g|30942|hepatocyte nuclear factor 4, gamma	AJ242626|Hnf4g|30942|hepatocyte nuclear factor 4, gamma	BC125519|Hnf4g|30942|hepatocyte nuclear factor 4, gamma
mm9_v1_chrX_+_38754568_38754592	0.719157	AIRE.p2	AK138615|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr7_-_134563059_134563065	0.718004	AIRE.p2	BC038680|Zfp688|69234|zinc finger protein 688
mm9_v1_chr5_+_88254710_88254721	0.717649	AIRE.p2	BC049645|4930432K09Rik|73779|RIKEN cDNA 4930432K09 gene	BC103787|4930432K09Rik|73779|RIKEN cDNA 4930432K09 gene	AK015291|4930432K09Rik|73779|RIKEN cDNA 4930432K09 gene	NM_001163551|4930432K09Rik|73779|RIKEN cDNA 4930432K09 gene	NM_028648|4930432K09Rik|73779|RIKEN cDNA 4930432K09 gene
mm9_v1_chr8_-_75091078_75091201	0.716134	AIRE.p2	
mm9_v1_chr1_+_21373636_21373636	0.712524	AIRE.p2	AK139842|Khdc1b|98582|KH domain containing 1B	NM_001113187|Khdc1b|98582|KH domain containing 1B
mm9_v1_chr4_-_129118034_129118085	0.708442	AIRE.p2	BC023839|Zbtb8b|215627|zinc finger and BTB domain containing 8b	AK140914|Zbtb8b|215627|zinc finger and BTB domain containing 8b	AK163930|Zbtb8b|215627|zinc finger and BTB domain containing 8b	NM_153541|Zbtb8b|215627|zinc finger and BTB domain containing 8b
mm9_v1_chr4_-_141402189_141402273	0.707906	AIRE.p2	AK007772|Ctrc|76701|chymotrypsin C (caldecrin)	BC103715|Ctrc|76701|chymotrypsin C (caldecrin)	BC115516|Ctrc|76701|chymotrypsin C (caldecrin)	BC115517|Ctrc|76701|chymotrypsin C (caldecrin)	NM_001033875|Ctrc|76701|chymotrypsin C (caldecrin)
mm9_v1_chr1_-_158330120_158330120	0.707693	AIRE.p2	AK134071|9430070O13Rik|77352|RIKEN cDNA 9430070O13 gene	NM_001198597|9430070O13Rik|77352|RIKEN cDNA 9430070O13 gene
mm9_v1_chr14_-_79647102_79647173	0.706226	AIRE.p2	AK139686|Zfp957|105590|zinc finger protein 957	NM_001033215|Zfp957|105590|zinc finger protein 957
mm9_v1_chr7_+_52810297_52810297	0.705859	AIRE.p2	NM_025330|Hsd17b14|66065|hydroxysteroid (17-beta) dehydrogenase 14
mm9_v1_chr6_-_38238095_38238171	0.7057	AIRE.p2	AK045178|Zc3hav1l|209032|zinc finger CCCH-type, antiviral 1-like
mm9_v1_chr13_+_77847947_77848021	0.703926	AIRE.p2	NM_001163419|Fam172a|68675|family with sequence similarity 172, member A	NM_001163420|Fam172a|68675|family with sequence similarity 172, member A	NM_138312|Fam172a|68675|family with sequence similarity 172, member A	AK165273|Fam172a|68675|family with sequence similarity 172, member A	AK052419|Fam172a|68675|family with sequence similarity 172, member A	AK166285|Fam172a|68675|family with sequence similarity 172, member A	BC057380|Fam172a|68675|family with sequence similarity 172, member A	AK049727|Fam172a|68675|family with sequence similarity 172, member A	AF064782|Fam172a|68675|family with sequence similarity 172, member A	AK081188|Fam172a|68675|family with sequence similarity 172, member A
mm9_v1_chr5_-_123632567_123632737	0.702271	AIRE.p2	X59530|Hpd|15445|4-hydroxyphenylpyruvic acid dioxygenase	NM_008277|Hpd|15445|4-hydroxyphenylpyruvic acid dioxygenase	BC013343|Hpd|15445|4-hydroxyphenylpyruvic acid dioxygenase	AK149416|Hpd|15445|4-hydroxyphenylpyruvic acid dioxygenase	D29987|Hpd|15445|4-hydroxyphenylpyruvic acid dioxygenase
mm9_v1_chr11_+_62388079_62388082	0.699998	AIRE.p2	AK089004|Trpv2|22368|transient receptor potential cation channel, subfamily V, member 2	AK089502|Trpv2|22368|transient receptor potential cation channel, subfamily V, member 2
mm9_v1_chr6_-_130256444_130256498	0.691688	AIRE.p2	AF204265|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	AF204266|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	AF204267|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	AF204268|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	BC099861|Klra13-ps|16631|killer cell lectin-like receptor subfamily A, member 13, pseudogene	AF074460|Klra13-ps|16631|killer cell lectin-like receptor subfamily A, member 13, pseudogene	AF283250|Klra23|79410|killer cell lectin-like receptor subfamily A, member 23	AF283251|Klra23|79410|killer cell lectin-like receptor subfamily A, member 23	AF283252|Klra13-ps|16631|killer cell lectin-like receptor subfamily A, member 13, pseudogene	AF307947|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	AF307948|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	NM_010646|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12
mm9_v1_chr15_-_82624668_82624681	0.691568	AIRE.p2	AK004915|Cyp2d26|76279|cytochrome P450, family 2, subfamily d, polypeptide 26	NM_029562|Cyp2d26|76279|cytochrome P450, family 2, subfamily d, polypeptide 26
mm9_v1_chr10_+_26492282_26492396	0.689916	AIRE.p2	BC030858|Arhgap18|73910|Rho GTPase activating protein 18	NM_176837|Arhgap18|73910|Rho GTPase activating protein 18	AK087800|Arhgap18|73910|Rho GTPase activating protein 18	AK014728|Arhgap18|73910|Rho GTPase activating protein 18
mm9_v1_chr2_+_172847371_172847458	0.685634	AIRE.p2	AK166609|Rbm38|56190|RNA binding motif protein 38	NM_019547|Rbm38|56190|RNA binding motif protein 38	BC006687|Rbm38|56190|RNA binding motif protein 38	AK162141|Rbm38|56190|RNA binding motif protein 38	AK146026|Rbm38|56190|RNA binding motif protein 38	AK172625|Rbm38|56190|RNA binding motif protein 38	BC085307|Rbm38|56190|RNA binding motif protein 38
mm9_v1_chr9_+_92204214_92204235	0.685	AIRE.p2	AK132905|1700057G04Rik|78459|RIKEN cDNA 1700057G04 gene	NM_001033184|1700057G04Rik|78459|RIKEN cDNA 1700057G04 gene	AK018865|1700057G04Rik|78459|RIKEN cDNA 1700057G04 gene
mm9_v1_chr9_-_96632093_96632093	0.684244	AIRE.p2	AK044467|Zbtb38|245007|zinc finger and BTB domain containing 38	NM_175537|Zbtb38|245007|zinc finger and BTB domain containing 38
mm9_v1_chr7_+_25055436_25055599	0.684047	AIRE.p2	AK132229|Zfp93|22755|zinc finger protein 93	NM_009567|Zfp93|22755|zinc finger protein 93	U46186|Zfp93|22755|zinc finger protein 93	AK146095|Zfp93|22755|zinc finger protein 93	AK165630|Zfp93|22755|zinc finger protein 93	AK040325|Zfp93|22755|zinc finger protein 93	AK028905|Zfp93|22755|zinc finger protein 93
mm9_v1_chr1_+_173144098_173144105	0.680111	AIRE.p2	AK133515|Nr1i3|12355|nuclear receptor subfamily 1, group I, member 3	NM_009803|Nr1i3|12355|nuclear receptor subfamily 1, group I, member 3
mm9_v1_chr15_-_83953604_83953604	0.679908	AIRE.p2	AK014771|Pnpla5|75772|patatin-like phospholipase domain containing 5	BC109360|Pnpla5|75772|patatin-like phospholipase domain containing 5	BC109361|Pnpla5|75772|patatin-like phospholipase domain containing 5	NM_029427|Pnpla5|75772|patatin-like phospholipase domain containing 5
mm9_v1_chr5_-_83783923_83784219	0.677823	AIRE.p2	AK052302|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	AK052378|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	AK052276|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	BC107366|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	BC107367|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	AF548365|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	AK052284|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	NM_153801|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like
mm9_v1_chr18_+_36942877_36943029	0.677669	AIRE.p2	AK088789|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	AK014515|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	AK145003|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	AK077621|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	BC004596|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	NM_080636|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)
mm9_v1_chr19_-_60937266_60937332	0.676924	AIRE.p2	AF325263|Sfxn4|94281|sideroflexin 4	BC089535|Sfxn4|94281|sideroflexin 4	AK148530|Sfxn4|94281|sideroflexin 4	BC058211|Sfxn4|94281|sideroflexin 4	NM_053198|Sfxn4|94281|sideroflexin 4
mm9_v1_chr4_-_117564594_117564651	0.676878	AIRE.p2	BC031124|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK018638|Dph2|67728|DPH2 homolog (S. cerevisiae)	NM_026344|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK011199|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK051026|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK080747|Dph2|67728|DPH2 homolog (S. cerevisiae)	BC014746|Dph2|67728|DPH2 homolog (S. cerevisiae)
mm9_v1_chr11_-_5662259_5662400	0.674964	AIRE.p2	BC066994|Urgcp|72046|upregulator of cell proliferation	AK035580|Urgcp|72046|upregulator of cell proliferation	AK041953|Urgcp|72046|upregulator of cell proliferation	NM_001077661|Urgcp|72046|upregulator of cell proliferation	AK037923|Urgcp|72046|upregulator of cell proliferation	AK053862|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr13_-_12612537_12612714	0.673838	AIRE.p2	AK148351|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	AK041545|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	AK042414|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	AF358671|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	NM_133643|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain
mm9_v1_chr6_-_30341017_30341032	0.672391	AIRE.p2	AK168071|Zc3hc1|232679|zinc finger, C3HC type 1	AK146228|Zc3hc1|232679|zinc finger, C3HC type 1	AK167992|Zc3hc1|232679|zinc finger, C3HC type 1
mm9_v1_chr2_-_27118325_27118417	0.671406	AIRE.p2	AK012893|Vav2|22325|vav 2 oncogene	BC025845|Vav2|22325|vav 2 oncogene
mm9_v1_chr8_-_109620413_109620444	0.669532	AIRE.p2	AK089419|Terf2|21750|telomeric repeat binding factor 2	BC046284|Terf2|21750|telomeric repeat binding factor 2	AK049507|Terf2|21750|telomeric repeat binding factor 2	NM_001083118|Terf2|21750|telomeric repeat binding factor 2	NM_009353|Terf2|21750|telomeric repeat binding factor 2
mm9_v1_chr2_+_181449669_181449860	0.669241	AIRE.p2	AF043276|Oprl1|18389|opioid receptor-like 1	U09421|Oprl1|18389|opioid receptor-like 1	AK031926|Oprl1|18389|opioid receptor-like 1	AK079529|Oprl1|18389|opioid receptor-like 1	NM_011012|Oprl1|18389|opioid receptor-like 1	AK043275|Oprl1|18389|opioid receptor-like 1	AK044178|Oprl1|18389|opioid receptor-like 1	X91813|Oprl1|18389|opioid receptor-like 1	AK142474|Oprl1|18389|opioid receptor-like 1	BC050885|Oprl1|18389|opioid receptor-like 1	U04952|Oprl1|18389|opioid receptor-like 1	BC051982|Oprl1|18389|opioid receptor-like 1
mm9_v1_chr8_+_58419621_58419700	0.667502	AIRE.p2	NM_080438|Glra3|110304|glycine receptor, alpha 3 subunit	AY230204|Glra3|110304|glycine receptor, alpha 3 subunit	AF362764|Glra3|110304|glycine receptor, alpha 3 subunit
mm9_v1_chr18_+_9957913_9958236	0.666896	AIRE.p2	AK168619|Thoc1|225160|THO complex 1	BC024951|Thoc1|225160|THO complex 1	AK167374|Thoc1|225160|THO complex 1	AK042867|Thoc1|225160|THO complex 1	AK139307|Thoc1|225160|THO complex 1	AK013983|Thoc1|225160|THO complex 1	AK031785|Thoc1|225160|THO complex 1	AK032200|Thoc1|225160|THO complex 1	NM_153552|Thoc1|225160|THO complex 1	AK052835|Thoc1|225160|THO complex 1	AK082591|Thoc1|225160|THO complex 1
mm9_v1_chr6_+_122576437_122576540	0.666629	AIRE.p2	AK135769|Dppa3|73708|developmental pluripotency-associated 3	AK136263|Dppa3|73708|developmental pluripotency-associated 3	AY134859|Dppa3|73708|developmental pluripotency-associated 3	AF490347|Dppa3|73708|developmental pluripotency-associated 3	AY082485|Dppa3|73708|developmental pluripotency-associated 3	NM_139218|Dppa3|73708|developmental pluripotency-associated 3	BC099433|Dppa3|73708|developmental pluripotency-associated 3	BC100331|Dppa3|73708|developmental pluripotency-associated 3	BC107340|Dppa3|73708|developmental pluripotency-associated 3	BC107341|Dppa3|73708|developmental pluripotency-associated 3	AK010723|Dppa3|73708|developmental pluripotency-associated 3	AB072734|Dppa3|73708|developmental pluripotency-associated 3
mm9_v1_chr14_-_20796199_20796254	0.666225	AIRE.p2	AK075698|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	AK160396|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	AK012405|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2
mm9_v1_chr11_-_97372344_97372370	0.66437	AIRE.p2	AK051643|Srcin1|56013|SRC kinase signaling inhibitor 1
mm9_v1_chr8_-_63461923_63462073	0.663512	AIRE.p2	BC057855|Clcn3|12725|chloride channel 3	X78874|Clcn3|12725|chloride channel 3	AK169297|Clcn3|12725|chloride channel 3	AK161327|Clcn3|12725|chloride channel 3	AK150688|Clcn3|12725|chloride channel 3	AK163732|Clcn3|12725|chloride channel 3	AK141136|Clcn3|12725|chloride channel 3	AK162639|Clcn3|12725|chloride channel 3
mm9_v1_chrX_-_159326220_159326424	0.663424	AIRE.p2	BC021373|Syap1|67043|synapse associated protein 1	AK147055|Syap1|67043|synapse associated protein 1	AK154843|Syap1|67043|synapse associated protein 1	AK051251|Syap1|67043|synapse associated protein 1	AK161413|Syap1|67043|synapse associated protein 1	AK008390|Syap1|67043|synapse associated protein 1	AK014893|Syap1|67043|synapse associated protein 1	AK011337|Syap1|67043|synapse associated protein 1	NM_025932|Syap1|67043|synapse associated protein 1
mm9_v1_chr4_+_12067460_12067484	0.662604	AIRE.p2	BC050844|Rbm12b|72397|RNA binding motif protein 12B
mm9_v1_chr2_-_87814819_87814819	0.662393	AIRE.p2	AB061229|Olfr74|117005|olfactory receptor 74	NM_054091|Olfr74|117005|olfactory receptor 74
mm9_v1_chr16_+_48283847_48283930	0.661906	AIRE.p2	AK033197|Dppa4|73693|developmental pluripotency associated 4	NM_001018002|Dppa4|73693|developmental pluripotency associated 4	NM_028610|Dppa4|73693|developmental pluripotency associated 4	AK010753|Dppa4|73693|developmental pluripotency associated 4	BC064754|Dppa4|73693|developmental pluripotency associated 4	AF490348|Dppa4|73693|developmental pluripotency associated 4
mm9_v1_chr8_-_46347363_46347377	0.66067	AIRE.p2	BC019485|F11|109821|coagulation factor XI	AF356627|F11|109821|coagulation factor XI
mm9_v1_chr1_+_173144142_173144169	0.660156	AIRE.p2	AK149381|Nr1i3|12355|nuclear receptor subfamily 1, group I, member 3	BC089541|Nr1i3|12355|nuclear receptor subfamily 1, group I, member 3	AF009327|Nr1i3|12355|nuclear receptor subfamily 1, group I, member 3
mm9_v1_chr3_+_154756499_154756551	0.660106	AIRE.p2	AK015333|Lrriq3|74435|leucine-rich repeats and IQ motif containing 3	AK016634|Lrriq3|74435|leucine-rich repeats and IQ motif containing 3	BC112424|Lrriq3|74435|leucine-rich repeats and IQ motif containing 3	BC113130|Lrriq3|74435|leucine-rich repeats and IQ motif containing 3	AK015758|Lrriq3|74435|leucine-rich repeats and IQ motif containing 3
mm9_v1_chr7_-_116651647_116651647	0.659124	AIRE.p2	AY572454|Trim66|330627|tripartite motif-containing 66	AY572455|Trim66|330627|tripartite motif-containing 66	NM_001170912|Trim66|330627|tripartite motif-containing 66	NM_181853|Trim66|330627|tripartite motif-containing 66
mm9_v1_chr5_-_124171015_124171067	0.657938	AIRE.p2	AK156770|Zcchc8|70650|zinc finger, CCHC domain containing 8	AK032349|Zcchc8|70650|zinc finger, CCHC domain containing 8	NM_027494|Zcchc8|70650|zinc finger, CCHC domain containing 8
mm9_v1_chr18_+_37157533_37157533	0.657933	AIRE.p2	AY013767|Pcdha9|192161|protocadherin alpha 9	NM_138661|Pcdha9|192161|protocadherin alpha 9
mm9_v1_chr17_-_56724005_56724033	0.65605	AIRE.p2	NM_001029979|Safb2|224902|scaffold attachment factor B2
mm9_v1_chr14_-_75991756_75991791	0.653967	AIRE.p2	AY092416|Spert|67926|spermatid associated	AK007022|Spert|67926|spermatid associated	BC109147|Spert|67926|spermatid associated	AK005703|Spert|67926|spermatid associated	NM_001164141|Spert|67926|spermatid associated	NM_026457|Spert|67926|spermatid associated
mm9_v1_chr3_+_13471681_13471721	0.649702	AIRE.p2	AK079659|Ralyl|76897|RALY RNA binding protein-like	AK032086|Ralyl|76897|RALY RNA binding protein-like
mm9_v1_chr5_-_124482223_124482295	0.645761	AIRE.p2	AK082658|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK172114|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK172337|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK149893|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK166359|Vps37b|330192|vacuolar protein sorting 37B (yeast)	BC026744|Vps37b|330192|vacuolar protein sorting 37B (yeast)	NM_177876|Vps37b|330192|vacuolar protein sorting 37B (yeast)
mm9_v1_chr19_-_11735008_11735048	0.638857	AIRE.p2	BC099498|Plac1l|225922|placenta-specific 1-like	AK143411|Plac1l|225922|placenta-specific 1-like	NM_001037634|Plac1l|225922|placenta-specific 1-like
mm9_v1_chrX_-_35022192_35022192	0.638779	AIRE.p2	AJ972670|Rhox4f|636177|reproductive homeobox 4F	NM_001039696|Rhox4f|636177|reproductive homeobox 4F
mm9_v1_chr7_+_16705217_16705304	0.638271	AIRE.p2	NM_133727|Kptn|70394|kaptin	AK081226|Kptn|70394|kaptin	AK009746|Kptn|70394|kaptin	BC018316|Kptn|70394|kaptin
mm9_v1_chr10_+_87663839_87663973	0.637336	AIRE.p2	AK013835|Ccdc53|67282|coiled-coil domain containing 53	AK158822|Ccdc53|67282|coiled-coil domain containing 53	NM_001122960|Ccdc53|67282|coiled-coil domain containing 53	NM_026070|Ccdc53|67282|coiled-coil domain containing 53	NM_027487|Ccdc53|67282|coiled-coil domain containing 53	AK017732|Ccdc53|67282|coiled-coil domain containing 53	AK004206|Ccdc53|67282|coiled-coil domain containing 53	AK028599|Ccdc53|67282|coiled-coil domain containing 53	AK009358|Ccdc53|67282|coiled-coil domain containing 53	BC029256|Ccdc53|67282|coiled-coil domain containing 53
mm9_v1_chr16_+_45158927_45158941	0.634404	AIRE.p2	AK005266|Atg3|67841|autophagy-related 3 (yeast)	AK011409|Atg3|67841|autophagy-related 3 (yeast)	AK150914|Atg3|67841|autophagy-related 3 (yeast)	AK159231|Atg3|67841|autophagy-related 3 (yeast)	NM_026402|Atg3|67841|autophagy-related 3 (yeast)
mm9_v1_chr6_+_52263491_52263491	0.633311	AIRE.p2	NM_007966|Evx1|14028|even skipped homeotic gene 1 homolog	X54239|Evx1|14028|even skipped homeotic gene 1 homolog
mm9_v1_chr4_-_94316806_94316834	0.6306	AIRE.p2	BC061228|Lrrc19|100061|leucine rich repeat containing 19	AK033594|Lrrc19|100061|leucine rich repeat containing 19	NM_175305|Lrrc19|100061|leucine rich repeat containing 19
mm9_v1_chr9_+_44446796_44446798	0.630234	AIRE.p2	AK156303|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chr17_+_37138107_37138107	0.630072	AIRE.p2	AK139625|Zfp57|22715|zinc finger protein 57	NM_001168502|Zfp57|22715|zinc finger protein 57
mm9_v1_chrX_+_38754480_38754557	0.629924	AIRE.p2	NM_016886|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	BC086678|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr1_+_92811676_92811782	0.629585	AIRE.p2	NM_053015|Mlph|171531|melanophilin	AF384098|Mlph|171531|melanophilin	BC006900|Mlph|171531|melanophilin	AK008973|Mlph|171531|melanophilin	AK019883|Mlph|171531|melanophilin	AK148274|Mlph|171531|melanophilin	BC150804|Mlph|171531|melanophilin
mm9_v1_chr12_-_82633781_82633909	0.628688	AIRE.p2	AY138960|Synj2bp|24071|synaptojanin 2 binding protein	BC027433|Synj2bp|24071|synaptojanin 2 binding protein	AK013474|Synj2bp|24071|synaptojanin 2 binding protein	AK163362|Synj2bp|24071|synaptojanin 2 binding protein	AK008254|Synj2bp|24071|synaptojanin 2 binding protein	AY566156|Synj2bp|24071|synaptojanin 2 binding protein	AK008054|Synj2bp|24071|synaptojanin 2 binding protein	AK078422|Synj2bp|24071|synaptojanin 2 binding protein	AK030379|Synj2bp|24071|synaptojanin 2 binding protein	AK033514|Synj2bp|24071|synaptojanin 2 binding protein	NM_025292|Synj2bp|24071|synaptojanin 2 binding protein
mm9_v1_chr6_-_136870688_136870700	0.626968	AIRE.p2	BC104406|Erp27|69187|endoplasmic reticulum protein 27	BC104407|Erp27|69187|endoplasmic reticulum protein 27	AK007684|Erp27|69187|endoplasmic reticulum protein 27	AK007800|Erp27|69187|endoplasmic reticulum protein 27	AK131830|Erp27|69187|endoplasmic reticulum protein 27	NM_026983|Erp27|69187|endoplasmic reticulum protein 27
mm9_v1_chr16_+_59148654_59148677	0.625632	AIRE.p2	BC119110|Olfr195|259000|olfactory receptor 195	NM_146998|Olfr195|259000|olfactory receptor 195
mm9_v1_chr15_-_82624638_82624663	0.625601	AIRE.p2	BC023241|Cyp2d26|76279|cytochrome P450, family 2, subfamily d, polypeptide 26
mm9_v1_chr4_-_12099125_12099161	0.6255	AIRE.p2	AK032690|Fam92a|68099|family with sequence similarity 92, member A	AK078438|Fam92a|68099|family with sequence similarity 92, member A	AK088705|Fam92a|68099|family with sequence similarity 92, member A	NM_026558|Fam92a|68099|family with sequence similarity 92, member A
mm9_v1_chr6_-_115201846_115201865	0.625458	AIRE.p2	BC064046|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK038820|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK040814|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr2_+_90585526_90585673	0.625414	AIRE.p2	NM_018828|Fnbp4|55935|formin binding protein 4	U40750|Fnbp4|55935|formin binding protein 4
mm9_v1_chr9_-_14849831_14849921	0.625325	AIRE.p2	BC020413|Panx1|55991|pannexin 1	AK089764|Panx1|55991|pannexin 1	AK014033|Panx1|55991|pannexin 1	AK156194|Panx1|55991|pannexin 1	AK053871|Panx1|55991|pannexin 1	BC049074|Panx1|55991|pannexin 1	EU446265|Panx1|55991|pannexin 1	NM_019482|Panx1|55991|pannexin 1
mm9_v1_chr18_+_37602153_37602224	0.623764	AIRE.p2	BC138123|Pcdhb13|93884|protocadherin beta 13	BC138124|Pcdhb13|93884|protocadherin beta 13	AK082435|Pcdhb13|93884|protocadherin beta 13	NM_053138|Pcdhb13|93884|protocadherin beta 13	AY013774|Pcdhb13|93884|protocadherin beta 13
mm9_v1_chr8_+_55686133_55686133	0.623728	AIRE.p2	AF395083|Spata4|69281|spermatogenesis associated 4	AF530515|Spata4|69281|spermatogenesis associated 4	AK005612|Spata4|69281|spermatogenesis associated 4	BC048650|Spata4|69281|spermatogenesis associated 4	NM_133711|Spata4|69281|spermatogenesis associated 4
mm9_v1_chr4_-_129118091_129118098	0.62371	AIRE.p2	AK132152|Zbtb8b|215627|zinc finger and BTB domain containing 8b
mm9_v1_chr4_+_135728188_135728308	0.621633	AIRE.p2	AK087452|E2f2|242705|E2F transcription factor 2	NM_177733|E2f2|242705|E2F transcription factor 2
mm9_v1_chr15_+_73582208_73582380	0.621088	AIRE.p2	BC027445|Ptp4a3|19245|protein tyrosine phosphatase 4a3	CT010215|Ptp4a3|19245|protein tyrosine phosphatase 4a3	AK003954|Ptp4a3|19245|protein tyrosine phosphatase 4a3
mm9_v1_chr7_+_24443334_24443439	0.621007	AIRE.p2	AF324873|Vmn1r172|81010|vomeronasal 1 receptor 172	NM_030735|Vmn1r172|81010|vomeronasal 1 receptor 172	BC139316|Vmn1r172|81010|vomeronasal 1 receptor 172	BC139317|Vmn1r172|81010|vomeronasal 1 receptor 172	BC145601|Vmn1r172|81010|vomeronasal 1 receptor 172
mm9_v1_chr1_+_44204776_44204895	0.620746	AIRE.p2	BC060659|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5	BC053034|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5	BC092235|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5	BC033413|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5	D16306|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5
mm9_v1_chr7_+_87331726_87331785	0.620731	AIRE.p2	AK145570|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	NM_013659|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	AK028896|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	AK173249|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm9_v1_chr2_+_104726480_104726480	0.620081	AIRE.p2	NM_177600|Ccdc73|211936|coiled-coil domain containing 73
mm9_v1_chr1_+_65973093_65973127	0.619775	AIRE.p2	AK013953|Crygf|12969|crystallin, gamma F	NM_027010|Crygf|12969|crystallin, gamma F	BC056453|Crygf|12969|crystallin, gamma F	M64543|Crygf|12969|crystallin, gamma F
mm9_v1_chr16_+_38362258_38362337	0.619133	AIRE.p2	NM_001081984|Popdc2|64082|popeye domain containing 2	BC064005|Popdc2|64082|popeye domain containing 2	NM_022318|Popdc2|64082|popeye domain containing 2	AK084713|Popdc2|64082|popeye domain containing 2	AF204175|Popdc2|64082|popeye domain containing 2
mm9_v1_chr12_+_111976121_111976196	0.61735	AIRE.p2	NM_027149|Wdr20a|69641|WD repeat domain 20A
mm9_v1_chr8_+_86239094_86239097	0.616648	AIRE.p2	NM_197982|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
mm9_v1_chr15_+_99800504_99800504	0.616221	AIRE.p2	AK139636|Larp4|207214|La ribonucleoprotein domain family, member 4	NM_001080948|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr17_-_20185168_20185168	0.614791	AIRE.p2	NM_001104566|Vmn2r104|22313|vomeronasal 2, receptor 104
mm9_v1_chr13_+_38129095_38129163	0.61446	AIRE.p2	AK152707|Riok1|71340|RIO kinase 1 (yeast)	BC006884|Riok1|71340|RIO kinase 1 (yeast)	AK017312|Riok1|71340|RIO kinase 1 (yeast)	NM_024242|Riok1|71340|RIO kinase 1 (yeast)
mm9_v1_chr13_+_67295437_67295470	0.61394	AIRE.p2	NM_001048204|Zfp455|218311|zinc finger protein 455	AK028336|Zfp455|218311|zinc finger protein 455
mm9_v1_chr6_-_78328836_78328858	0.613125	AIRE.p2	AK019033|Reg3d|30053|regenerating islet-derived 3 delta	AB035204|Reg3d|30053|regenerating islet-derived 3 delta	BC113760|Reg3d|30053|regenerating islet-derived 3 delta	AB028625|Reg3d|30053|regenerating islet-derived 3 delta	NM_001161741|Reg3d|30053|regenerating islet-derived 3 delta	NM_013893|Reg3d|30053|regenerating islet-derived 3 delta
mm9_v1_chr8_+_71317827_71317912	0.610483	AIRE.p2	AK040574|Ints10|70885|integrator complex subunit 10	AK047093|Ints10|70885|integrator complex subunit 10	AK014939|Ints10|70885|integrator complex subunit 10	NM_027590|Ints10|70885|integrator complex subunit 10	AK147743|Ints10|70885|integrator complex subunit 10	AK169819|Ints10|70885|integrator complex subunit 10	AK030974|Ints10|70885|integrator complex subunit 10	BC031923|Ints10|70885|integrator complex subunit 10	AK083331|Ints10|70885|integrator complex subunit 10	AK034498|Ints10|70885|integrator complex subunit 10
mm9_v1_chr6_-_115201866_115201882	0.608724	AIRE.p2	AK079347|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK140367|Timp4|110595|tissue inhibitor of metalloproteinase 4	NM_080639|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr12_-_74018746_74018843	0.608162	AIRE.p2	BC137875|4930447C04Rik|75801|RIKEN cDNA 4930447C04 gene	AK015397|4930447C04Rik|75801|RIKEN cDNA 4930447C04 gene	NM_029444|4930447C04Rik|75801|RIKEN cDNA 4930447C04 gene	AK014811|4930447C04Rik|75801|RIKEN cDNA 4930447C04 gene
mm9_v1_chr17_+_21560190_21560333	0.608043	AIRE.p2	BC080782|Zfp54|22712|zinc finger protein 54	NM_011760|Zfp54|22712|zinc finger protein 54	AK148292|Zfp54|22712|zinc finger protein 54	AF080070|Zfp54|22712|zinc finger protein 54	AK012854|Zfp54|22712|zinc finger protein 54
mm9_v1_chr17_-_26206459_26206461	0.60632	AIRE.p2	AK080103|Rab11fip3|215445|RAB11 family interacting protein 3 (class II)
mm9_v1_chr7_-_34977928_34978057	0.604176	AIRE.p2	BC025090|Pdcd2l|68079|programmed cell death 2-like	BC038524|Pdcd2l|68079|programmed cell death 2-like
mm9_v1_chr6_-_30340952_30341009	0.602857	AIRE.p2	BC037445|Zc3hc1|232679|zinc finger, C3HC type 1	AJ537495|Zc3hc1|232679|zinc finger, C3HC type 1	AK151694|Zc3hc1|232679|zinc finger, C3HC type 1	BC050141|Zc3hc1|232679|zinc finger, C3HC type 1	AK088527|Zc3hc1|232679|zinc finger, C3HC type 1	AK167465|Zc3hc1|232679|zinc finger, C3HC type 1	NM_172735|Zc3hc1|232679|zinc finger, C3HC type 1
mm9_v1_chr18_+_37105758_37105860	0.602619	AIRE.p2	AK129120|Pcdha3|192163|protocadherin alpha 3	BC141348|Pcdha3|192163|protocadherin alpha 3	AY013761|Pcdha3|192163|protocadherin alpha 3	NM_138662|Pcdha3|192163|protocadherin alpha 3
mm9_v1_chr1_+_173144116_173144124	0.602212	AIRE.p2	AK149430|Nr1i3|12355|nuclear receptor subfamily 1, group I, member 3
mm9_v1_chr3_+_20008792_20008792	0.601914	AIRE.p2	BC039796|Hltf|20585|helicase-like transcription factor
mm9_v1_chrX_-_7258126_7258153	0.60099	AIRE.p2	BC132580|Magix|54634|MAGI family member, X-linked	BC132582|Magix|54634|MAGI family member, X-linked
mm9_v1_chr8_-_35153699_35153753	0.600802	AIRE.p2	
mm9_v1_chr5_-_14914888_14914888	0.600591	AIRE.p2	BC048454|Gm9758|381714|predicted gene 9758	NM_198666|Gm9758|381714|predicted gene 9758
mm9_v1_chr4_-_94595442_94595518	0.599476	AIRE.p2	AB438105|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	AB438106|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	AK006446|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	DQ336137|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	AK016313|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	BC089517|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	NM_027089|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	AK016738|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	EU828781|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	EU828782|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene
mm9_v1_chr5_+_88983413_88983556	0.599269	AIRE.p2	BC003213|Utp3|65961|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)	AK010316|Utp3|65961|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)	AK145637|Utp3|65961|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)	BC016581|Utp3|65961|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)	BC022994|Utp3|65961|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)	AF155362|Utp3|65961|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)	AF271213|Utp3|65961|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)	NM_023054|Utp3|65961|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)
mm9_v1_chr6_+_47870566_47870709	0.597613	AIRE.p2	NM_001145881|Zfp212|232784|Zinc finger protein 212	NM_145576|Zfp212|232784|Zinc finger protein 212	BC088737|Zfp212|232784|Zinc finger protein 212	BC006693|Zfp212|232784|Zinc finger protein 212	AK129476|Zfp212|232784|Zinc finger protein 212
mm9_v1_chr7_-_59117613_59117656	0.595451	AIRE.p2	NM_001115087|Fancf|100040608|Fanconi anemia, complementation group F
mm9_v1_chr6_-_149050067_149050107	0.595396	AIRE.p2	AK135015|Dennd5b|320560|DENN/MADD domain containing 5B	AK038858|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr7_-_35833597_35833632	0.593194	AIRE.p2	AK087103|Cebpg|12611|CCAAT/enhancer binding protein (C/EBP), gamma
mm9_v1_chr5_+_90919758_90919765	0.588775	AIRE.p2	AK075972|Afp|11576|alpha fetoprotein	AK076197|Afp|11576|alpha fetoprotein	AK146513|Afp|11576|alpha fetoprotein	AK146524|Afp|11576|alpha fetoprotein	AK168426|Afp|11576|alpha fetoprotein	AK168574|Afp|11576|alpha fetoprotein	AK168751|Afp|11576|alpha fetoprotein	AK169046|Afp|11576|alpha fetoprotein	AK169054|Afp|11576|alpha fetoprotein	AK010934|Afp|11576|alpha fetoprotein	AK076053|Afp|11576|alpha fetoprotein	AK145975|Afp|11576|alpha fetoprotein	AK168576|Afp|11576|alpha fetoprotein	AK168883|Afp|11576|alpha fetoprotein	AK169147|Afp|11576|alpha fetoprotein	AK167549|Afp|11576|alpha fetoprotein	V00743|Afp|11576|alpha fetoprotein
mm9_v1_chr12_+_60196786_60196786	0.588705	AIRE.p2	AF390177|Mia2|338320|melanoma inhibitory activity 2	NM_177321|Mia2|338320|melanoma inhibitory activity 2
mm9_v1_chr10_+_39332739_39332739	0.588516	AIRE.p2	AK052190|Traf3ip2|103213|TRAF3 interacting protein 2	NM_134000|Traf3ip2|103213|TRAF3 interacting protein 2
mm9_v1_chr13_-_48608762_48608790	0.587016	AIRE.p2	BC060222|Zfp169|67911|zinc finger protein 169	NM_001164575|Zfp169|67911|zinc finger protein 169
mm9_v1_chrX_+_34805369_34805468	0.58664	AIRE.p2	AJ972665|Rhox4a|664609|reproductive homeobox 4A	NM_001039688|Rhox4a|664609|reproductive homeobox 4A	DQ058641|Rhox4a|664609|reproductive homeobox 4A	BC116370|Rhox4a|664609|reproductive homeobox 4A	BC116371|Rhox4a|664609|reproductive homeobox 4A	AK017380|Rhox4a|664609|reproductive homeobox 4A	BC057925|Rhox4a|664609|reproductive homeobox 4A	BC145382|Rhox4a|664609|reproductive homeobox 4A	BC171959|Rhox4a|664609|reproductive homeobox 4A
mm9_v1_chr4_+_106721017_106721031	0.583531	AIRE.p2	AK144320|Ssbp3|72475|single-stranded DNA binding protein 3
mm9_v1_chr10_+_80720251_80720289	0.58109	AIRE.p2	AK079816|Matk|17179|megakaryocyte-associated tyrosine kinase	U05210|Matk|17179|megakaryocyte-associated tyrosine kinase	L27738|Matk|17179|megakaryocyte-associated tyrosine kinase	NM_010768|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr15_+_98538624_98538661	0.575813	AIRE.p2	AK077174|Ccdc65|105833|coiled-coil domain containing 65	BC048073|Ccdc65|105833|coiled-coil domain containing 65	AF454432|Ccdc65|105833|coiled-coil domain containing 65	NM_153518|Ccdc65|105833|coiled-coil domain containing 65	BC056947|Ccdc65|105833|coiled-coil domain containing 65	BC060155|Ccdc65|105833|coiled-coil domain containing 65
mm9_v1_chr16_+_81200971_81201083	0.575683	AIRE.p2	AK132363|Ncam2|17968|neural cell adhesion molecule 2	AF001286|Ncam2|17968|neural cell adhesion molecule 2	AF001287|Ncam2|17968|neural cell adhesion molecule 2	AF016619|Ncam2|17968|neural cell adhesion molecule 2	BC119027|Ncam2|17968|neural cell adhesion molecule 2	BC119029|Ncam2|17968|neural cell adhesion molecule 2
mm9_v1_chr3_+_95733186_95733221	0.575055	AIRE.p2	AK088401|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK012759|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK049647|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK159446|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK147888|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm9_v1_chr12_+_70397702_70397722	0.573604	AIRE.p2	AK082528|Klhdc2|69554|kelch domain containing 2	AY513272|Klhdc2|69554|kelch domain containing 2
mm9_v1_chr2_+_170111212_170111359	0.572851	AIRE.p2	
mm9_v1_chr10_-_75931858_75931858	0.570809	AIRE.p2	BC057308|Ybey|216119|ybeY metallopeptidase	NM_172550|Ybey|216119|ybeY metallopeptidase
mm9_v1_chr4_-_132019760_132019840	0.570234	AIRE.p2	BC068306|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	AK012903|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	AK012886|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	NM_026039|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	AK159696|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)
mm9_v1_chr9_-_108551631_108551731	0.570117	AIRE.p2	AK165028|Arih2|23807|ariadne homolog 2 (Drosophila)	AK149936|Arih2|23807|ariadne homolog 2 (Drosophila)	BC051998|Arih2|23807|ariadne homolog 2 (Drosophila)	BC052422|Arih2|23807|ariadne homolog 2 (Drosophila)	NM_011790|Arih2|23807|ariadne homolog 2 (Drosophila)	AK011094|Arih2|23807|ariadne homolog 2 (Drosophila)	AK168055|Arih2|23807|ariadne homolog 2 (Drosophila)
mm9_v1_chr5_+_89012596_89012599	0.569031	AIRE.p2	BC049127|Rufy3|52822|RUN and FYVE domain containing 3	NM_027530|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr11_-_98590680_98590748	0.567945	AIRE.p2	AF126543|Med24|23989|mediator complex subunit 24	AK193218|Med24|23989|mediator complex subunit 24	AK020269|Med24|23989|mediator complex subunit 24	AK154618|Med24|23989|mediator complex subunit 24	AK158385|Med24|23989|mediator complex subunit 24	NM_011869|Med24|23989|mediator complex subunit 24
mm9_v1_chr1_+_168184269_168184413	0.567474	AIRE.p2	NM_001164528|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024494|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024495|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024496|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024497|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024498|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024499|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024500|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024501|Ildr2|100039795|immunoglobulin-like domain containing receptor 2
mm9_v1_chr7_+_126697853_126697853	0.56639	AIRE.p2	AK140827|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2	NM_001177977|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2
mm9_v1_chr10_+_86520790_86520790	0.564062	AIRE.p2	NM_029685|1700113H08Rik|76640|RIKEN cDNA 1700113H08 gene
mm9_v1_chr13_-_35055651_35055680	0.559906	AIRE.p2	BC014724|1810022C23Rik|69123|RIKEN cDNA 1810022C23 gene	AK007578|1810022C23Rik|69123|RIKEN cDNA 1810022C23 gene	AK131590|1810022C23Rik|69123|RIKEN cDNA 1810022C23 gene	NM_026947|1810022C23Rik|69123|RIKEN cDNA 1810022C23 gene
mm9_v1_chrX_-_35929359_35929377	0.557329	AIRE.p2	BC004026|Cul4b|72584|cullin 4B	AK032701|Cul4b|72584|cullin 4B	AY330868|Cul4b|72584|cullin 4B	NM_001110142|Cul4b|72584|cullin 4B	NM_028288|Cul4b|72584|cullin 4B
mm9_v1_chr16_-_95680888_95680987	0.555984	AIRE.p2	AK142379|Erg|13876|avian erythroblastosis virus E-26 (v-ets) oncogene related
mm9_v1_chr19_+_58803376_58803466	0.553224	AIRE.p2	AF061274|Pnliprp1|18946|pancreatic lipase related protein 1	NM_018874|Pnliprp1|18946|pancreatic lipase related protein 1	AK028105|Pnliprp1|18946|pancreatic lipase related protein 1	BC090985|Pnliprp1|18946|pancreatic lipase related protein 1
mm9_v1_chr18_+_32227377_32227461	0.552683	AIRE.p2	NM_173441|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK033013|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK041691|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK028247|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK163972|Iws1|73473|IWS1 homolog (S. cerevisiae)	BC068184|Iws1|73473|IWS1 homolog (S. cerevisiae)
mm9_v1_chr16_-_22265901_22266018	0.552277	AIRE.p2	BC057996|Tra2b|20462|transformer 2 beta homolog (Drosophila)	X80232|Tra2b|20462|transformer 2 beta homolog (Drosophila)	BC086795|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK080378|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK169483|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK152519|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK167387|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK077418|Tra2b|20462|transformer 2 beta homolog (Drosophila)	BC061177|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK150007|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK049573|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK152761|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK167544|Tra2b|20462|transformer 2 beta homolog (Drosophila)	NM_009186|Tra2b|20462|transformer 2 beta homolog (Drosophila)
mm9_v1_chr10_-_53349799_53349820	0.551779	AIRE.p2	AK018494|Mcm9|71567|minichromosome maintenance complex component 9
mm9_v1_chr10_-_62064997_62065070	0.551426	AIRE.p2	BC060220|Ddx21|56200|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	AK012125|Ddx21|56200|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	BC043655|Ddx21|56200|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	BC059237|Ddx21|56200|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	AF159131|Ddx21|56200|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	AK160095|Ddx21|56200|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	AK145578|Ddx21|56200|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	NM_019553|Ddx21|56200|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
mm9_v1_chr6_-_58422871_58422871	0.550949	AIRE.p2	NM_001166729|Vmn1r31|626828|vomeronasal 1 receptor 31
mm9_v1_chr4_+_146124224_146124224	0.550634	AIRE.p2	NM_001177546|Zfp600|667666|zinc finger protein 600
mm9_v1_chr2_+_175639464_175639537	0.547499	AIRE.p2	AK039408|Gm4724|100043915|predicted gene 4724	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	NM_001099349|Gm14308|100043381|predicted gene 14308	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr2_+_34262301_34262360	0.547272	AIRE.p2	AK132263|Mapkap1|227743|mitogen-activated protein kinase associated protein 1
mm9_v1_chr9_+_121619562_121619584	0.546481	AIRE.p2	AK078209|Deb1|26901|differentially expressed in B16F10 1	AK085962|Deb1|26901|differentially expressed in B16F10 1
mm9_v1_chr9_+_31193769_31193815	0.546156	AIRE.p2	NM_172766|Nfrkb|235134|nuclear factor related to kappa B binding protein	AK041206|Nfrkb|235134|nuclear factor related to kappa B binding protein	AK043432|Nfrkb|235134|nuclear factor related to kappa B binding protein	BC060076|Nfrkb|235134|nuclear factor related to kappa B binding protein	BC033595|Nfrkb|235134|nuclear factor related to kappa B binding protein	BC059861|Nfrkb|235134|nuclear factor related to kappa B binding protein
mm9_v1_chr7_+_111367306_111367377	0.546057	AIRE.p2	AK040000|Trim6|94088|tripartite motif-containing 6	NM_001013616|Trim6|94088|tripartite motif-containing 6	AK021253|Trim6|94088|tripartite motif-containing 6	AK033396|Trim6|94088|tripartite motif-containing 6	AK049238|Trim6|94088|tripartite motif-containing 6	BC138965|Trim6|94088|tripartite motif-containing 6
mm9_v1_chr3_+_95733163_95733182	0.543939	AIRE.p2	AK172146|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	NM_023210|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm9_v1_chr4_-_49493883_49493911	0.541901	AIRE.p2	AK037657|9030417H13Rik|74545|RIKEN cDNA 9030417H13 gene	AK018513|9030417H13Rik|74545|RIKEN cDNA 9030417H13 gene
mm9_v1_chr13_-_61043271_61043296	0.541321	AIRE.p2	AY034575|Tpbpa|21984|trophoblast specific protein alpha	BC099391|Tpbpa|21984|trophoblast specific protein alpha	X17071|Tpbpa|21984|trophoblast specific protein alpha	AK160140|Tpbpa|21984|trophoblast specific protein alpha	AK018825|Tpbpa|21984|trophoblast specific protein alpha	AK005438|Tpbpa|21984|trophoblast specific protein alpha	AK018800|Tpbpa|21984|trophoblast specific protein alpha	AK018802|Tpbpa|21984|trophoblast specific protein alpha	AK028071|Tpbpa|21984|trophoblast specific protein alpha	AK005406|Tpbpa|21984|trophoblast specific protein alpha	AK005417|Tpbpa|21984|trophoblast specific protein alpha	AK005446|Tpbpa|21984|trophoblast specific protein alpha	AK005499|Tpbpa|21984|trophoblast specific protein alpha	AK011401|Tpbpa|21984|trophoblast specific protein alpha	AK014443|Tpbpa|21984|trophoblast specific protein alpha	AK018797|Tpbpa|21984|trophoblast specific protein alpha	AK018803|Tpbpa|21984|trophoblast specific protein alpha	AK018806|Tpbpa|21984|trophoblast specific protein alpha	AK018807|Tpbpa|21984|trophoblast specific protein alpha	AK018811|Tpbpa|21984|trophoblast specific protein alpha	AK018812|Tpbpa|21984|trophoblast specific protein alpha	AK018813|Tpbpa|21984|trophoblast specific protein alpha	AK018814|Tpbpa|21984|trophoblast specific protein alpha	AK018815|Tpbpa|21984|trophoblast specific protein alpha	AK018819|Tpbpa|21984|trophoblast specific protein alpha	AK018821|Tpbpa|21984|trophoblast specific protein alpha	AK018823|Tpbpa|21984|trophoblast specific protein alpha	AK018826|Tpbpa|21984|trophoblast specific protein alpha	NM_009411|Tpbpa|21984|trophoblast specific protein alpha	AK005454|Tpbpa|21984|trophoblast specific protein alpha	AK018822|Tpbpa|21984|trophoblast specific protein alpha
mm9_v1_chr2_+_122060526_122060603	0.541254	AIRE.p2	AK152169|Sord|20322|sorbitol dehydrogenase	AK166996|Sord|20322|sorbitol dehydrogenase	AK004692|Sord|20322|sorbitol dehydrogenase	BC024124|Sord|20322|sorbitol dehydrogenase	BC092291|Sord|20322|sorbitol dehydrogenase	AK015059|Sord|20322|sorbitol dehydrogenase	NM_146126|Sord|20322|sorbitol dehydrogenase	AK166988|Sord|20322|sorbitol dehydrogenase	U27014|Sord|20322|sorbitol dehydrogenase	BC039957|Sord|20322|sorbitol dehydrogenase	BC030875|Sord|20322|sorbitol dehydrogenase
mm9_v1_chr18_+_75169426_75169445	0.536885	AIRE.p2	
mm9_v1_chr13_-_46788898_46788932	0.533607	AIRE.p2	
mm9_v1_chrX_-_45866446_45866665	0.532595	AIRE.p2	AK211196|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1	AF100927|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1	AK133764|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1	BC003292|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1	DQ016499|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1	NM_012019|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1
mm9_v1_chr6_+_56664888_56664904	0.532269	AIRE.p2	AK147365|Avl9|78937|AVL9 homolog (S. cerevisiase)	NM_030235|Avl9|78937|AVL9 homolog (S. cerevisiase)
mm9_v1_chr4_+_141302589_141302623	0.530985	AIRE.p2	NM_001081408|Agmat|75986|agmatine ureohydrolase (agmatinase)
mm9_v1_chr4_-_61100653_61100734	0.530715	AIRE.p2	NM_001045550|Mup2|17841|major urinary protein 2	NM_008647|Mup2|17841|major urinary protein 2
mm9_v1_chr5_+_90919768_90919776	0.530276	AIRE.p2	BC066206|Afp|11576|alpha fetoprotein
mm9_v1_chr1_-_164742679_164742679	0.529906	AIRE.p2	AF461145|Fmo4|226564|flavin containing monooxygenase 4	NM_144878|Fmo4|226564|flavin containing monooxygenase 4
mm9_v1_chr11_-_40562196_40562300	0.524183	AIRE.p2	
mm9_v1_chr7_-_11896030_11896030	0.523127	AIRE.p2	NM_001161802|Zscan4e|665848|zinc finger and SCAN domain containing 4E
mm9_v1_chr17_-_23908488_23908570	0.522966	AIRE.p2	AK168389|Flywch1|224613|FLYWCH-type zinc finger 1	NM_153791|Flywch1|224613|FLYWCH-type zinc finger 1
mm9_v1_chr6_+_122407245_122407359	0.518725	AIRE.p2	AK159742|Rps27a|78294|ribosomal protein S27A
mm9_v1_chr10_+_74500008_74500039	0.518705	AIRE.p2	AK046113|Rab36|76877|RAB36, member RAS oncogene family
mm9_v1_chr5_-_67490295_67490393	0.518689	AIRE.p2	AK052579|Phox2b|18935|paired-like homeobox 2b	BC079610|Phox2b|18935|paired-like homeobox 2b	NM_008888|Phox2b|18935|paired-like homeobox 2b	Y14493|Phox2b|18935|paired-like homeobox 2b
mm9_v1_chr16_+_48310386_48310386	0.517935	AIRE.p2	AY561246|Dppa2|73703|developmental pluripotency associated 2	NM_028615|Dppa2|73703|developmental pluripotency associated 2
mm9_v1_chr8_+_75247189_75247206	0.51586	AIRE.p2	AK165592|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	BC021160|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	BC129859|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	L38622|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	BC096367|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	AF038848|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	BC020049|Sin3b|20467|transcriptional regulator, SIN3B (yeast)
mm9_v1_chr3_-_89215727_89215795	0.515421	AIRE.p2	BC025817|Flad1|319945|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)	BC046769|Flad1|319945|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)	NM_177041|Flad1|319945|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)	AK161929|Flad1|319945|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)	AK044501|Flad1|319945|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)
mm9_v1_chr4_-_143752454_143752553	0.51534	AIRE.p2	AY573563|Oog3|100012|oogenesin 3	BC053700|Oog3|100012|oogenesin 3	AK136030|Oog3|100012|oogenesin 3	NM_201258|Oog3|100012|oogenesin 3
mm9_v1_chr10_+_60552061_60552145	0.513501	AIRE.p2	NM_025273|Pcbd1|13180|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	AK007401|Pcbd1|13180|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	BC024354|Pcbd1|13180|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1
mm9_v1_chr5_-_109224353_109224381	0.512856	AIRE.p2	BC132664|Tmed11|67366|transmembrane emp24 protein transport domain containing	BC132666|Tmed11|67366|transmembrane emp24 protein transport domain containing	AK019032|Tmed11|67366|transmembrane emp24 protein transport domain containing	AK007381|Tmed11|67366|transmembrane emp24 protein transport domain containing	NM_026109|Tmed11|67366|transmembrane emp24 protein transport domain containing
mm9_v1_chr7_-_25917458_25917515	0.51265	AIRE.p2	AY746974|Pou2f2|18987|POU domain, class 2, transcription factor 2	BC104488|Pou2f2|18987|POU domain, class 2, transcription factor 2	BC105647|Pou2f2|18987|POU domain, class 2, transcription factor 2	BC105920|Pou2f2|18987|POU domain, class 2, transcription factor 2	BC105921|Pou2f2|18987|POU domain, class 2, transcription factor 2	NM_001163554|Pou2f2|18987|POU domain, class 2, transcription factor 2	NM_001163555|Pou2f2|18987|POU domain, class 2, transcription factor 2	NM_001163556|Pou2f2|18987|POU domain, class 2, transcription factor 2	NM_011138|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57936|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57937|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57938|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57939|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57940|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57941|Pou2f2|18987|POU domain, class 2, transcription factor 2	AK156322|Pou2f2|18987|POU domain, class 2, transcription factor 2	BC050258|Pou2f2|18987|POU domain, class 2, transcription factor 2	AY746973|Pou2f2|18987|POU domain, class 2, transcription factor 2
mm9_v1_chr19_+_12040311_12040373	0.512582	AIRE.p2	NM_001033174|Osbp|76303|oxysterol binding protein
mm9_v1_chr5_-_125914417_125914513	0.51222	AIRE.p2	BC066077|Dhx37|208144|DEAH (Asp-Glu-Ala-His) box polypeptide 37	NM_203319|Dhx37|208144|DEAH (Asp-Glu-Ala-His) box polypeptide 37	BC080298|Dhx37|208144|DEAH (Asp-Glu-Ala-His) box polypeptide 37	AK148257|Dhx37|208144|DEAH (Asp-Glu-Ala-His) box polypeptide 37
mm9_v1_chr19_-_29887442_29887463	0.511778	AIRE.p2	BC056759|Ranbp6|240614|RAN binding protein 6	AK044143|Ranbp6|240614|RAN binding protein 6	BC139395|Ranbp6|240614|RAN binding protein 6	BC139396|Ranbp6|240614|RAN binding protein 6	NM_177721|Ranbp6|240614|RAN binding protein 6
mm9_v1_chr5_-_65726802_65726885	0.510831	AIRE.p2	U07157|Rfc1|19687|replication factor C (activator 1) 1	X72711|Rfc1|19687|replication factor C (activator 1) 1	BC085174|Rfc1|19687|replication factor C (activator 1) 1	U01222|Rfc1|19687|replication factor C (activator 1) 1	U36441|Rfc1|19687|replication factor C (activator 1) 1	BC085173|Rfc1|19687|replication factor C (activator 1) 1	AK136937|Rfc1|19687|replication factor C (activator 1) 1	AK132028|Rfc1|19687|replication factor C (activator 1) 1	AK146164|Rfc1|19687|replication factor C (activator 1) 1	AK146314|Rfc1|19687|replication factor C (activator 1) 1	NM_011258|Rfc1|19687|replication factor C (activator 1) 1	U15037|Rfc1|19687|replication factor C (activator 1) 1
mm9_v1_chr11_-_79317471_79317554	0.508939	AIRE.p2	BC024757|Omg|18377|oligodendrocyte myelin glycoprotein
mm9_v1_chr1_+_123327625_123327651	0.508848	AIRE.p2	AK142302|Ccdc93|70829|coiled-coil domain containing 93	NM_001025156|Ccdc93|70829|coiled-coil domain containing 93	NM_029955|Ccdc93|70829|coiled-coil domain containing 93	AK082581|Ccdc93|70829|coiled-coil domain containing 93
mm9_v1_chr17_-_47551659_47551659	0.505516	AIRE.p2	AK005579|1700001C19Rik|75462|RIKEN cDNA 1700001C19 gene	NM_001172091|1700001C19Rik|75462|RIKEN cDNA 1700001C19 gene
mm9_v1_chr6_-_57929295_57929295	0.505496	AIRE.p2	NM_053238|Vmn1r25|113865|vomeronasal 1 receptor 25
mm9_v1_chr16_-_10395401_10395557	0.504488	AIRE.p2	AK014352|Tekt5|70426|tektin 5	BC115969|Tekt5|70426|tektin 5	NM_001099275|Tekt5|70426|tektin 5	GQ292766|Tekt5|70426|tektin 5
mm9_v1_chr11_+_97702591_97702632	0.503011	AIRE.p2	AK081899|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK140210|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK042827|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK031146|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK035650|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK018341|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK080808|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK082773|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene
mm9_v1_chr9_-_91255831_91255857	0.502747	AIRE.p2	AK141431|Zic1|22771|zinc finger protein of the cerebellum 1
mm9_v1_chrX_-_75336699_75336712	0.501575	AIRE.p2	BC125514|Obp1a|18249|odorant binding protein Ia	BC125516|Obp1a|18249|odorant binding protein Ia	AK017455|Obp1a|18249|odorant binding protein Ia	NM_008754|Obp1a|18249|odorant binding protein Ia
mm9_v1_chr4_+_143436399_143436414	0.500466	AIRE.p2	AK054347|Gm13103|194225|predicted gene 13103	NM_177571|Gm13103|194225|predicted gene 13103	BC096438|Gm13103|194225|predicted gene 13103
mm9_v1_chr17_-_56256668_56256720	0.500368	AIRE.p2	AY919875|Plin5|66968|perilipin 5	NM_001077348|Plin5|66968|perilipin 5
mm9_v1_chrX_+_156146532_156146595	0.500322	AIRE.p2	AK030839|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_021389|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK004636|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK020782|Sh3kbp1|58194|SH3-domain kinase binding protein 1	BC052863|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr13_-_21545556_21545633	0.498963	AIRE.p2	AK156196|Zfp187|432731|zinc finger protein 187	NM_001013786|Zfp187|432731|zinc finger protein 187
mm9_v1_chr3_-_81779636_81779675	0.498905	AIRE.p2	U24493|Tdo2|56720|tryptophan 2,3-dioxygenase	BC018390|Tdo2|56720|tryptophan 2,3-dioxygenase	NM_019911|Tdo2|56720|tryptophan 2,3-dioxygenase	AK132271|Tdo2|56720|tryptophan 2,3-dioxygenase
mm9_v1_chr11_-_106646226_106646242	0.498235	AIRE.p2	AK013106|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr3_+_26536552_26536628	0.494345	AIRE.p2	AK076628|Spata16|70862|spermatogenesis associated 16	NM_027583|Spata16|70862|spermatogenesis associated 16	NM_029150|Spata16|70862|spermatogenesis associated 16	BC100443|Spata16|70862|spermatogenesis associated 16	AK015690|Spata16|70862|spermatogenesis associated 16	AK014869|Spata16|70862|spermatogenesis associated 16	BC132205|Spata16|70862|spermatogenesis associated 16	BC132539|Spata16|70862|spermatogenesis associated 16
mm9_v1_chr13_-_48720941_48721032	0.492398	AIRE.p2	BC066081|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1	NM_207232|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1	AK132781|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1	AK038922|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1	AK030415|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1
mm9_v1_chr17_-_86544514_86544514	0.490896	AIRE.p2	AK021298|Srbd1|78586|S1 RNA binding domain 1	NM_030133|Srbd1|78586|S1 RNA binding domain 1
mm9_v1_chr1_-_44159187_44159306	0.490787	AIRE.p2	BC116881|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene	BC119032|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene	AK160565|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene	NM_029368|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene	BC099557|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene
mm9_v1_chr1_-_141456740_141456821	0.490633	AIRE.p2	BC111870|Cfhr1|50702|complement factor H-related 1	M29008|Cfhr1|50702|complement factor H-related 1	NM_015780|Cfhr1|50702|complement factor H-related 1
mm9_v1_chr11_-_69575192_69575469	0.490576	AIRE.p2	AF016712|Amac1|56293|acyl-malonyl condensing enzyme 1	BC137893|Amac1|56293|acyl-malonyl condensing enzyme 1	BC137894|Amac1|56293|acyl-malonyl condensing enzyme 1	NM_019871|Amac1|56293|acyl-malonyl condensing enzyme 1	AK077181|Amac1|56293|acyl-malonyl condensing enzyme 1
mm9_v1_chr10_+_4978047_4978054	0.48879	AIRE.p2	AK122550|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr8_+_74474946_74475007	0.488215	AIRE.p2	AK158413|Zfp961|234413|zinc finger protein 961	NM_001164581|Zfp961|234413|zinc finger protein 961	BC065788|Zfp961|234413|zinc finger protein 961	AK020714|Zfp961|234413|zinc finger protein 961	BC049349|Zfp961|234413|zinc finger protein 961
mm9_v1_chr14_+_79851641_79851647	0.486652	AIRE.p2	AK159684|Gm5465|432879|predicted gene 5465	NM_001034882|Gm5465|432879|predicted gene 5465	AK163295|Gm5465|432879|predicted gene 5465
mm9_v1_chr12_-_73509925_73510040	0.48585	AIRE.p2	NM_153457|Rtn1|104001|reticulon 1	AK132364|Rtn1|104001|reticulon 1
mm9_v1_chr4_+_128820458_128820467	0.485287	AIRE.p2	AK137327|Fndc5|384061|fibronectin type III domain containing 5
mm9_v1_chr5_-_86539474_86539529	0.485285	AIRE.p2	AK017687|Uba6|231380|ubiquitin-like modifier activating enzyme 6
mm9_v1_chr5_-_15033006_15033006	0.484413	AIRE.p2	AK006011|Speer4c|100502967|spermatogenesis associated glutamate (E)-rich protein 4c	NM_182957|Gm17019|66773|predicted gene 17019
mm9_v1_chr17_-_33961403_33961506	0.484342	AIRE.p2	U11248|Rps28|54127|ribosomal protein S28	BC010987|Rps28|54127|ribosomal protein S28	AK002919|Rps28|54127|ribosomal protein S28	BC090982|Rps28|54127|ribosomal protein S28	NM_016844|Rps28|54127|ribosomal protein S28	BC125644|Rps28|54127|ribosomal protein S28	BC125646|Rps28|54127|ribosomal protein S28
mm9_v1_chr14_-_56830194_56830253	0.484053	AIRE.p2	X12823|Gzmf|14943|granzyme F	BC145435|Gzmf|14943|granzyme F	BC100311|Gzmf|14943|granzyme F	NM_010374|Gzmf|14943|granzyme F	J03257|Gzmf|14943|granzyme F
mm9_v1_chr11_-_68821930_68821976	0.484035	AIRE.p2	AK139115|Pfas|237823|phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)	NM_001159519|Pfas|237823|phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)
mm9_v1_chr6_-_41586378_41586413	0.483938	AIRE.p2	AK085123|Trpv6|64177|transient receptor potential cation channel, subfamily V, member 6	AK168760|Trpv6|64177|transient receptor potential cation channel, subfamily V, member 6	NM_022413|Trpv6|64177|transient receptor potential cation channel, subfamily V, member 6
mm9_v1_chr14_-_51765134_51765162	0.483325	AIRE.p2	AK019019|Rnase1|19752|ribonuclease, RNase A family, 1 (pancreatic)
mm9_v1_chr2_+_181336020_181336108	0.483243	AIRE.p2	AK145461|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	NM_133701|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	AK166890|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	BC025030|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	AK011639|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	AK081998|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	BC014869|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	BC023691|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)
mm9_v1_chr5_-_143987485_143987560	0.479867	AIRE.p2	AY820308|Spdyb|74673|speedy homolog B (Xenopus laevis)	AK015441|Spdyb|74673|speedy homolog B (Xenopus laevis)	NM_029048|Spdyb|74673|speedy homolog B (Xenopus laevis)
mm9_v1_chr3_+_13471643_13471656	0.479151	AIRE.p2	NM_001163328|Ralyl|76897|RALY RNA binding protein-like	NM_178631|Ralyl|76897|RALY RNA binding protein-like
mm9_v1_chr19_-_44210311_44210378	0.478604	AIRE.p2	BC037640|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	BC027553|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	AK012163|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	AK139654|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	NM_001081077|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)
mm9_v1_chr8_+_119983566_119983649	0.478341	AIRE.p2	AK049761|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr3_+_89908053_89908055	0.477906	AIRE.p2	NM_029937|Nup210l|77595|nucleoporin 210-like	AK019752|Nup210l|77595|nucleoporin 210-like
mm9_v1_chr5_+_144309573_144309659	0.47703	AIRE.p2	NM_026050|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	NM_133703|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK075875|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK076127|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	BC012231|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK156614|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	BC100440|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK165304|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK014805|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK005298|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene
mm9_v1_chr3_-_132897852_132897912	0.476573	AIRE.p2	BC049886|Arhgef38|77669|ho guanine nucleotide exchange factor (GEF) 38	NM_029953|Arhgef38|77669|ho guanine nucleotide exchange factor (GEF) 38	AK020284|Arhgef38|77669|ho guanine nucleotide exchange factor (GEF) 38
mm9_v1_chr8_-_18741546_18741552	0.476305	AIRE.p2	AK143974|Angpt2|11601|angiopoietin 2	AK019860|Angpt2|11601|angiopoietin 2	NM_007426|Angpt2|11601|angiopoietin 2
mm9_v1_chr6_-_136890189_136890259	0.476111	AIRE.p2	BC031763|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta	L07918|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta	AK169733|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta	AK002516|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta	NM_007486|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta
mm9_v1_chr5_-_130175960_130176006	0.475989	AIRE.p2	BC058553|Zfp11|22648|zinc finger protein 11	NM_172462|Zfp11|22648|zinc finger protein 11	AK032872|Zfp11|22648|zinc finger protein 11
mm9_v1_chr13_+_67880629_67880739	0.475781	AIRE.p2	NM_028402|Zfp493|72958|zinc finger protein 493	AK013687|Zfp493|72958|zinc finger protein 493	AK140336|Zfp493|72958|zinc finger protein 493
mm9_v1_chr19_+_26822892_26822948	0.475695	AIRE.p2	NM_026003|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	AK011935|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm9_v1_chr1_+_165925016_165925075	0.472738	AIRE.p2	AK139786|2810422O20Rik|69962|RIKEN cDNA 2810422O20 gene	BC052693|2810422O20Rik|69962|RIKEN cDNA 2810422O20 gene	AK013137|2810422O20Rik|69962|RIKEN cDNA 2810422O20 gene	BC038687|2810422O20Rik|69962|RIKEN cDNA 2810422O20 gene	BC050143|2810422O20Rik|69962|RIKEN cDNA 2810422O20 gene	NM_027279|2810422O20Rik|69962|RIKEN cDNA 2810422O20 gene
mm9_v1_chr8_-_112261607_112261664	0.469794	AIRE.p2	AK089170|Atxn1l|52335|ataxin 1-like	NM_001080930|Atxn1l|52335|ataxin 1-like	AK172521|Atxn1l|52335|ataxin 1-like
mm9_v1_chr17_-_34133397_34133417	0.469272	AIRE.p2	M13197|H2-K1|14972|histocompatibility 2, K1, K region	M23901|H2-K1|14972|histocompatibility 2, K1, K region
mm9_v1_chr7_+_138554108_138554177	0.469192	AIRE.p2	NM_025826|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain	AK131628|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain	BC054428|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain
mm9_v1_chr7_-_11490398_11490398	0.467026	AIRE.p2	NM_001185173|Zscan4b|665780|zinc finger and SCAN domain containing 4B
mm9_v1_chrX_-_7258190_7258376	0.465196	AIRE.p2	BC099459|Magix|54634|MAGI family member, X-linked	NM_018832|Magix|54634|MAGI family member, X-linked	AK158091|Magix|54634|MAGI family member, X-linked	AK077898|Magix|54634|MAGI family member, X-linked
mm9_v1_chr6_-_149049906_149050060	0.463211	AIRE.p2	BC132199|Dennd5b|320560|DENN/MADD domain containing 5B	BC132535|Dennd5b|320560|DENN/MADD domain containing 5B	BC145128|Dennd5b|320560|DENN/MADD domain containing 5B	AK052296|Dennd5b|320560|DENN/MADD domain containing 5B	AK050728|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr4_+_33397279_33397404	0.462514	AIRE.p2	AK151463|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	NM_011884|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK150497|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK160007|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK002922|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK079488|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK142016|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK160706|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	BC043657|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK169305|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AF034568|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AF025653|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase
mm9_v1_chr4_-_126413512_126413512	0.461542	AIRE.p2	NM_198960|Tcfap2e|332937|transcription factor AP-2, epsilon
mm9_v1_chr7_-_110926856_110926856	0.461452	AIRE.p2	NM_013620|Olfr68|18369|olfactory receptor 68
mm9_v1_chr7_-_129125061_129125233	0.459974	AIRE.p2	AK191299|Cog7|233824|component of oligomeric golgi complex 7	AK030709|Cog7|233824|component of oligomeric golgi complex 7	AK145163|Cog7|233824|component of oligomeric golgi complex 7	AK154693|Cog7|233824|component of oligomeric golgi complex 7	NM_001033318|Cog7|233824|component of oligomeric golgi complex 7	AK172200|Cog7|233824|component of oligomeric golgi complex 7	AK163143|Cog7|233824|component of oligomeric golgi complex 7
mm9_v1_chr6_+_30459848_30459899	0.459663	AIRE.p2	AK006038|1700025E21Rik|75647|RIKEN cDNA 1700025E21 gene	NM_027073|1700025E21Rik|75647|RIKEN cDNA 1700025E21 gene	BC049755|1700025E21Rik|75647|RIKEN cDNA 1700025E21 gene
mm9_v1_chr9_-_64188945_64189063	0.458317	AIRE.p2	AK035357|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	AK032451|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	BC056939|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	AK173310|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	AK150851|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	AK151780|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	AK153433|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	NM_001001295|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like
mm9_v1_chr7_-_20250303_20250406	0.458042	AIRE.p2	AK218417|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	BC022172|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	AK148080|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	D67067|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	AK152410|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	AK152809|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	AK171901|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	AK165742|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	NM_019649|Clptm1|56457|cleft lip and palate associated transmembrane protein 1
mm9_v1_chr10_-_127735123_127735139	0.456602	AIRE.p2	BC019953|Il23a|83430|interleukin 23, alpha subunit p19	AF301619|Il23a|83430|interleukin 23, alpha subunit p19	NM_031252|Il23a|83430|interleukin 23, alpha subunit p19
mm9_v1_chr1_+_87423176_87423243	0.456571	AIRE.p2	AK156961|Csprs|114564|component of Sp100-rs
mm9_v1_chr13_-_101262292_101262366	0.455758	AIRE.p2	BC016231|Gtf2h2|23894|general transcription factor II H, polypeptide 2	AK154739|Gtf2h2|23894|general transcription factor II H, polypeptide 2	AK145720|Gtf2h2|23894|general transcription factor II H, polypeptide 2
mm9_v1_chrX_+_34894843_34894843	0.45541	AIRE.p2	AJ972667|Rhox4c|434759|reproductive homeobox 4C	NM_001039689|Rhox4c|434759|reproductive homeobox 4C
mm9_v1_chr6_+_124654080_124654110	0.452366	AIRE.p2	AK194975|Lpcat3|14792|lysophosphatidylcholine acyltransferase 3
mm9_v1_chr6_+_56664919_56664961	0.450712	AIRE.p2	AK122228|Avl9|78937|AVL9 homolog (S. cerevisiase)	AK020003|Avl9|78937|AVL9 homolog (S. cerevisiase)	BC051177|Avl9|78937|AVL9 homolog (S. cerevisiase)	BC117878|Avl9|78937|AVL9 homolog (S. cerevisiase)	BC117879|Avl9|78937|AVL9 homolog (S. cerevisiase)	AK083605|Avl9|78937|AVL9 homolog (S. cerevisiase)
mm9_v1_chr12_-_99816091_99816149	0.448812	AIRE.p2	BC132487|Kcnk10|72258|potassium channel, subfamily K, member 10	BC137869|Kcnk10|72258|potassium channel, subfamily K, member 10	AK082153|Kcnk10|72258|potassium channel, subfamily K, member 10	NM_029911|Kcnk10|72258|potassium channel, subfamily K, member 10
mm9_v1_chr19_+_56622750_56622913	0.448102	AIRE.p2	AK033384|Nhlrc2|66866|NHL repeat containing 2	NM_025811|Nhlrc2|66866|NHL repeat containing 2	BC095956|Nhlrc2|66866|NHL repeat containing 2	BC138190|Nhlrc2|66866|NHL repeat containing 2	BC138191|Nhlrc2|66866|NHL repeat containing 2
mm9_v1_chr10_+_111409750_111409849	0.44699	AIRE.p2	NM_178610|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK012108|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK045526|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK036447|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK146926|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC089510|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK011972|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK030560|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK032472|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK041854|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK168675|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC094236|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chrX_-_71598873_71598966	0.446794	AIRE.p2	AK134624|Lage3|66192|L antigen family, member 3	BC027305|Lage3|66192|L antigen family, member 3	AK004210|Lage3|66192|L antigen family, member 3	AK002539|Lage3|66192|L antigen family, member 3	NM_025410|Lage3|66192|L antigen family, member 3
mm9_v1_chr11_-_65981945_65982052	0.444183	AIRE.p2	AK082443|Dnahc9|237806|dynein, axonemal, heavy chain 9	AK030981|Dnahc9|237806|dynein, axonemal, heavy chain 9	AK044263|Dnahc9|237806|dynein, axonemal, heavy chain 9	NM_001099633|Dnahc9|237806|dynein, axonemal, heavy chain 9
mm9_v1_chr7_+_129776837_129777102	0.443004	AIRE.p2	BC038148|Prkcb|18751|protein kinase C, beta	BC048553|Prkcb|18751|protein kinase C, beta
mm9_v1_chr2_-_77008655_77008700	0.442605	AIRE.p2	AK045498|Ccdc141|545428|coiled-coil domain containing 141	AK011952|Ccdc141|545428|coiled-coil domain containing 141	AK053175|Ccdc141|545428|coiled-coil domain containing 141	NM_001025576|Ccdc141|545428|coiled-coil domain containing 141	AK041121|Ccdc141|545428|coiled-coil domain containing 141
mm9_v1_chr9_-_58097569_58097598	0.442236	AIRE.p2	AK052305|Pml|18854|promyelocytic leukemia	AK054135|Pml|18854|promyelocytic leukemia	AK028044|Pml|18854|promyelocytic leukemia	NM_008884|Pml|18854|promyelocytic leukemia	NM_178087|Pml|18854|promyelocytic leukemia
mm9_v1_chr13_-_48608795_48608824	0.44148	AIRE.p2	AK162962|Zfp169|67911|zinc finger protein 169	AK086737|Zfp169|67911|zinc finger protein 169	NM_001164576|Zfp169|67911|zinc finger protein 169	NM_026450|Zfp169|67911|zinc finger protein 169
mm9_v1_chr16_+_38902431_38902466	0.439731	AIRE.p2	BC057555|Igsf11|207683|immunoglobulin superfamily, member 11	NM_170599|Igsf11|207683|immunoglobulin superfamily, member 11
mm9_v1_chr17_+_8565260_8565260	0.439463	AIRE.p2	NM_001161832|T2|21331|brachyury 2
mm9_v1_chr3_-_10301182_10301182	0.436742	AIRE.p2	BC030910|Fabp12|75497|fatty acid binding protein 12	NM_029310|Fabp12|75497|fatty acid binding protein 12
mm9_v1_chr4_+_134483092_134483164	0.434991	AIRE.p2	
mm9_v1_chr14_+_54980488_54980535	0.434724	AIRE.p2	AK139484|Oxa1l|69089|oxidase assembly 1-like	AK154304|Oxa1l|69089|oxidase assembly 1-like	AK007567|Oxa1l|69089|oxidase assembly 1-like	AK087756|Oxa1l|69089|oxidase assembly 1-like	AK028379|Oxa1l|69089|oxidase assembly 1-like	AK052432|Oxa1l|69089|oxidase assembly 1-like	AK077624|Oxa1l|69089|oxidase assembly 1-like	AK154532|Oxa1l|69089|oxidase assembly 1-like	AK163101|Oxa1l|69089|oxidase assembly 1-like	AK170898|Oxa1l|69089|oxidase assembly 1-like	NM_026936|Oxa1l|69089|oxidase assembly 1-like	AK044817|Oxa1l|69089|oxidase assembly 1-like	BC027191|Oxa1l|69089|oxidase assembly 1-like
mm9_v1_chr11_+_86940545_86940631	0.434229	AIRE.p2	AK140822|Trim37|68729|tripartite motif-containing 37	BC058678|Trim37|68729|tripartite motif-containing 37	NM_197987|Trim37|68729|tripartite motif-containing 37	BC078416|Trim37|68729|tripartite motif-containing 37	BC059070|Trim37|68729|tripartite motif-containing 37
mm9_v1_chr1_+_83156336_83156343	0.433945	AIRE.p2	AK016977|Wdr69|71227|WD repeat domain 69	BC049704|Wdr69|71227|WD repeat domain 69	BC144994|Wdr69|71227|WD repeat domain 69	BC145995|Wdr69|71227|WD repeat domain 69	NM_027725|Wdr69|71227|WD repeat domain 69	AK016201|Wdr69|71227|WD repeat domain 69
mm9_v1_chr15_+_6395311_6395349	0.433244	AIRE.p2	BC011137|C9|12279|complement component 9	NM_013485|C9|12279|complement component 9
mm9_v1_chr7_+_11983263_11983263	0.433193	AIRE.p2	AK141250|Zscan4f|665902|zinc finger and SCAN domain containing 4F	NM_001110316|Zscan4f|665902|zinc finger and SCAN domain containing 4F
mm9_v1_chr13_-_104533638_104533655	0.431923	AIRE.p2	
mm9_v1_chr4_-_134323845_134323948	0.431216	AIRE.p2	BC021467|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK159800|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	BC066808|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	BC067411|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK167290|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK029008|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK148340|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	NM_145554|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1
mm9_v1_chr11_-_53448203_53448203	0.430726	AIRE.p2	M23504|Il13|16163|interleukin 13	NM_008355|Il13|16163|interleukin 13
mm9_v1_chr14_+_57021419_57021536	0.430152	AIRE.p2	AF190166|Rnf17|30054|ring finger protein 17	AF285585|Rnf17|30054|ring finger protein 17	AY854010|Rnf17|30054|ring finger protein 17	AY854011|Rnf17|30054|ring finger protein 17	NM_001033043|Rnf17|30054|ring finger protein 17	AK136196|Rnf17|30054|ring finger protein 17
mm9_v1_chrX_+_108009728_108009803	0.429921	AIRE.p2	BC138657|Pou3f4|18994|POU domain, class 3, transcription factor 4	BC145919|Pou3f4|18994|POU domain, class 3, transcription factor 4	BC052012|Pou3f4|18994|POU domain, class 3, transcription factor 4	X66603|Pou3f4|18994|POU domain, class 3, transcription factor 4	AK158302|Pou3f4|18994|POU domain, class 3, transcription factor 4	BC086670|Pou3f4|18994|POU domain, class 3, transcription factor 4	NM_008901|Pou3f4|18994|POU domain, class 3, transcription factor 4
mm9_v1_chr12_+_70397667_70397700	0.427378	AIRE.p2	AK078408|Klhdc2|69554|kelch domain containing 2	NM_027117|Klhdc2|69554|kelch domain containing 2
mm9_v1_chr17_+_66472859_66472952	0.42615	AIRE.p2	BC079656|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	NM_001003919|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK076357|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK049419|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK152868|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)
mm9_v1_chr1_-_13117243_13117243	0.425537	AIRE.p2	AK134292|Prdm14|383491|PR domain containing 14	NM_001081209|Prdm14|383491|PR domain containing 14
mm9_v1_chr19_+_18787654_18787754	0.425436	AIRE.p2	AK145019|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	AK155389|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	AK083631|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	NM_177640|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	BC020125|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene
mm9_v1_chr12_+_86311859_86311909	0.418757	AIRE.p2	NM_028632|Fcf1|73736|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)	BC094619|Fcf1|73736|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)	BC033045|Fcf1|73736|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)
mm9_v1_chr10_-_79209301_79209350	0.417063	AIRE.p2	BC110697|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK154729|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK053356|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK154181|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK047545|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK085666|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK128956|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	BC117939|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	BC117940|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK030039|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	NM_172551|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)
mm9_v1_chr7_-_134335965_134336058	0.415491	AIRE.p2	AK005198|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2
mm9_v1_chr11_+_62387987_62388017	0.415158	AIRE.p2	NM_011706|Trpv2|22368|transient receptor potential cation channel, subfamily V, member 2
mm9_v1_chr1_+_161974815_161974830	0.414825	AIRE.p2	AK034159|4930523C07Rik|67647|RIKEN cDNA 4930523C07 gene
mm9_v1_chr5_+_25265761_25265876	0.414053	AIRE.p2	BC053106|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	BC082279|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	NM_001004365|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	AK144936|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	AK035798|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)
mm9_v1_chr19_+_34035676_34035740	0.414053	AIRE.p2	AK009923|Lipf|67717|lipase, gastric	AK009428|Lipf|67717|lipase, gastric	AK009431|Lipf|67717|lipase, gastric	AK009546|Lipf|67717|lipase, gastric	AK075913|Lipf|67717|lipase, gastric	AK009300|Lipf|67717|lipase, gastric	AK009359|Lipf|67717|lipase, gastric	AK009413|Lipf|67717|lipase, gastric	AK009437|Lipf|67717|lipase, gastric	AK009459|Lipf|67717|lipase, gastric	AK009473|Lipf|67717|lipase, gastric	AK009474|Lipf|67717|lipase, gastric	AK009523|Lipf|67717|lipase, gastric	AK009525|Lipf|67717|lipase, gastric	AK009537|Lipf|67717|lipase, gastric	AK009560|Lipf|67717|lipase, gastric	AK009571|Lipf|67717|lipase, gastric	AK009573|Lipf|67717|lipase, gastric	AK009729|Lipf|67717|lipase, gastric	AK009773|Lipf|67717|lipase, gastric	AK009875|Lipf|67717|lipase, gastric	AK009990|Lipf|67717|lipase, gastric	AK010019|Lipf|67717|lipase, gastric	AK010026|Lipf|67717|lipase, gastric	AK010035|Lipf|67717|lipase, gastric	AK010036|Lipf|67717|lipase, gastric	AK010058|Lipf|67717|lipase, gastric	AK010061|Lipf|67717|lipase, gastric	AK010091|Lipf|67717|lipase, gastric	AK010093|Lipf|67717|lipase, gastric	AK010103|Lipf|67717|lipase, gastric	AK010106|Lipf|67717|lipase, gastric	AK010110|Lipf|67717|lipase, gastric	AK010116|Lipf|67717|lipase, gastric	AK010123|Lipf|67717|lipase, gastric	AK010125|Lipf|67717|lipase, gastric	AK010139|Lipf|67717|lipase, gastric	AK010148|Lipf|67717|lipase, gastric	AK010173|Lipf|67717|lipase, gastric	AK010203|Lipf|67717|lipase, gastric	AK010231|Lipf|67717|lipase, gastric	AK010236|Lipf|67717|lipase, gastric	BC061067|Lipf|67717|lipase, gastric	NM_026334|Lipf|67717|lipase, gastric	AK009479|Lipf|67717|lipase, gastric	AK009544|Lipf|67717|lipase, gastric
mm9_v1_chr7_+_129210954_129210978	0.413046	AIRE.p2	AK011862|Ubfd1|28018|ubiquitin family domain containing 1
mm9_v1_chr9_-_19976012_19976012	0.411946	AIRE.p2	NM_146904|Olfr870|57251|olfactory receptor 870
mm9_v1_chr10_-_112363848_112364044	0.411658	AIRE.p2	AK078766|Atxn7l3b|382423|ataxin 7-like 3B	AK051537|Atxn7l3b|382423|ataxin 7-like 3B
mm9_v1_chr10_-_31134240_31134240	0.411398	AIRE.p2	NM_011509|Gm3258|100041294|predicted gene 3258
mm9_v1_chr3_-_10331334_10331440	0.411279	AIRE.p2	BC055722|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AF042730|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK160467|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK083238|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK145472|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK011770|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK160203|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK165977|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	BC049080|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK078406|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK152774|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK147778|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK153457|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK168457|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	NM_018864|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1
mm9_v1_chr2_+_80478985_80479013	0.410115	AIRE.p2	AF411517|Nup35|69482|nucleoporin 35	AK136109|Nup35|69482|nucleoporin 35	BC048814|Nup35|69482|nucleoporin 35
mm9_v1_chr8_+_108424267_108424373	0.409712	AIRE.p2	AK153861|Pskh1|244631|protein serine kinase H1	AK053397|Pskh1|244631|protein serine kinase H1	AK154570|Pskh1|244631|protein serine kinase H1	AK166338|Pskh1|244631|protein serine kinase H1	BC050128|Pskh1|244631|protein serine kinase H1	NM_173432|Pskh1|244631|protein serine kinase H1
mm9_v1_chr19_-_41970627_41970698	0.409656	AIRE.p2	BC062977|Rrp12|107094|ribosomal RNA processing 12 homolog (S. cerevisiae)	NM_199447|Rrp12|107094|ribosomal RNA processing 12 homolog (S. cerevisiae)	AK146550|Rrp12|107094|ribosomal RNA processing 12 homolog (S. cerevisiae)	BC056232|Rrp12|107094|ribosomal RNA processing 12 homolog (S. cerevisiae)
mm9_v1_chr11_+_89892027_89892040	0.407594	AIRE.p2	AK003574|Tmem100|67888|transmembrane protein 100	AK033406|Tmem100|67888|transmembrane protein 100
mm9_v1_chr19_-_12841737_12842025	0.403716	AIRE.p2	AK018620|Zfp91|109910|zinc finger protein 91	AK012081|Zfp91|109910|zinc finger protein 91
mm9_v1_chr8_-_95624574_95624626	0.403678	AIRE.p2	
mm9_v1_chr10_+_79422870_79422988	0.400855	AIRE.p2	AK087505|Wdr18|216156|WD repeat domain 18	AK133716|Wdr18|216156|WD repeat domain 18	BC095984|Wdr18|216156|WD repeat domain 18	NM_175450|Wdr18|216156|WD repeat domain 18	AK032251|Wdr18|216156|WD repeat domain 18	AK050106|Wdr18|216156|WD repeat domain 18	AK160713|Wdr18|216156|WD repeat domain 18	AK163465|Wdr18|216156|WD repeat domain 18	AK166113|Wdr18|216156|WD repeat domain 18	AK168691|Wdr18|216156|WD repeat domain 18	AK082695|Wdr18|216156|WD repeat domain 18
mm9_v1_chr5_+_15124916_15124916	0.399973	AIRE.p2	AK017002|Speer4d|360220|spermatogenesis associated glutamate (E)-rich protein 4d	NM_025759|Speer4d|360220|spermatogenesis associated glutamate (E)-rich protein 4d
mm9_v1_chr15_+_6395353_6395370	0.399944	AIRE.p2	X05475|C9|12279|complement component 9
mm9_v1_chr9_-_16182674_16182674	0.396829	AIRE.p2	NM_001080814|Fat3|270120|FAT tumor suppressor homolog 3 (Drosophila)
mm9_v1_chrX_-_130516223_130516350	0.394812	AIRE.p2	AK030401|Sytl4|27359|synaptotagmin-like 4	AK161582|Sytl4|27359|synaptotagmin-like 4	AB025258|Sytl4|27359|synaptotagmin-like 4	AB025259|Sytl4|27359|synaptotagmin-like 4	NM_013757|Sytl4|27359|synaptotagmin-like 4	BC026819|Sytl4|27359|synaptotagmin-like 4
mm9_v1_chr9_+_122076647_122076688	0.394268	AIRE.p2	
mm9_v1_chr2_-_85488475_85488475	0.392605	AIRE.p2	NM_146573|Olfr1002|258566|olfactory receptor 1002
mm9_v1_chr11_-_20612281_20612323	0.390455	AIRE.p2	AK150458|Aftph|216549|aftiphilin	AK152308|Aftph|216549|aftiphilin	AK152487|Aftph|216549|aftiphilin	AK161532|Aftph|216549|aftiphilin
mm9_v1_chr15_-_74879242_74879259	0.389999	AIRE.p2	AK088782|Ly6c1|17067|lymphocyte antigen 6 complex, locus C1	AK143577|Ly6c1|17067|lymphocyte antigen 6 complex, locus C1	BC010764|Ly6c1|17067|lymphocyte antigen 6 complex, locus C1	NM_010741|Ly6c1|17067|lymphocyte antigen 6 complex, locus C1
mm9_v1_chr4_-_58021900_58021995	0.388787	AIRE.p2	AY495589|Txndc8|67402|thioredoxin domain containing 8	BC049564|Txndc8|67402|thioredoxin domain containing 8	AK006683|Txndc8|67402|thioredoxin domain containing 8	AK015240|Txndc8|67402|thioredoxin domain containing 8	BC116763|Txndc8|67402|thioredoxin domain containing 8	BC116765|Txndc8|67402|thioredoxin domain containing 8	BC144839|Txndc8|67402|thioredoxin domain containing 8	BC144840|Txndc8|67402|thioredoxin domain containing 8	NM_026132|Txndc8|67402|thioredoxin domain containing 8
mm9_v1_chr15_-_78685925_78685959	0.386997	AIRE.p2	BC027504|Lgals2|107753|lectin, galactose-binding, soluble 2	AK007364|Lgals2|107753|lectin, galactose-binding, soluble 2	AK008607|Lgals2|107753|lectin, galactose-binding, soluble 2	AK008423|Lgals2|107753|lectin, galactose-binding, soluble 2	AK008636|Lgals2|107753|lectin, galactose-binding, soluble 2	AK008648|Lgals2|107753|lectin, galactose-binding, soluble 2	NM_025622|Lgals2|107753|lectin, galactose-binding, soluble 2
mm9_v1_chr3_-_98663713_98663719	0.386741	AIRE.p2	AK146665|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	AK147114|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	NM_008293|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1
mm9_v1_chr17_+_87762817_87762839	0.386445	AIRE.p2	BC057906|Ttc7|225049|tetratricopeptide repeat domain 7
mm9_v1_chr8_-_27054528_27054658	0.385604	AIRE.p2	
mm9_v1_chr1_-_135517936_135517963	0.383121	AIRE.p2	AK003350|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr1_+_82721477_82721553	0.382991	AIRE.p2	BC059229|Mff|75734|mitochondrial fission factor	NM_029409|Mff|75734|mitochondrial fission factor	AK017226|Mff|75734|mitochondrial fission factor	AK083056|Mff|75734|mitochondrial fission factor	AK139649|Mff|75734|mitochondrial fission factor
mm9_v1_chr17_-_31649139_31649255	0.381146	AIRE.p2	AK213574|Wdr4|57773|WD repeat domain 4	AK164160|Wdr4|57773|WD repeat domain 4	AJ271892|Wdr4|57773|WD repeat domain 4	AJ271893|Wdr4|57773|WD repeat domain 4	AK035125|Wdr4|57773|WD repeat domain 4	BC039272|Wdr4|57773|WD repeat domain 4	AK152271|Wdr4|57773|WD repeat domain 4	AK153161|Wdr4|57773|WD repeat domain 4	AK144821|Wdr4|57773|WD repeat domain 4
mm9_v1_chr14_-_73762324_73762328	0.380576	AIRE.p2	AK010248|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr11_-_118151298_118151557	0.380532	AIRE.p2	AK129363|Usp36|72344|ubiquitin specific peptidase 36	AK079342|Usp36|72344|ubiquitin specific peptidase 36	AK165635|Usp36|72344|ubiquitin specific peptidase 36	AK049205|Usp36|72344|ubiquitin specific peptidase 36	AK028572|Usp36|72344|ubiquitin specific peptidase 36	NM_001033528|Usp36|72344|ubiquitin specific peptidase 36
mm9_v1_chr7_-_107663293_107663468	0.3786	AIRE.p2	AK139680|Dnajb13|69387|DnaJ (Hsp40) related, subfamily B, member 13	BC048501|Dnajb13|69387|DnaJ (Hsp40) related, subfamily B, member 13	NM_153527|Dnajb13|69387|DnaJ (Hsp40) related, subfamily B, member 13	AF419292|Dnajb13|69387|DnaJ (Hsp40) related, subfamily B, member 13
mm9_v1_chr7_+_6173879_6173879	0.378323	AIRE.p2	AK139659|Zscan5b|170734|zinc finger and SCAN domain containing 5B	NM_133204|Zscan5b|170734|zinc finger and SCAN domain containing 5B
mm9_v1_chr12_+_72149332_72149349	0.377694	AIRE.p2	AK149171|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)
mm9_v1_chr12_+_36652206_36652279	0.377056	AIRE.p2	BC023499|Agr3|403205|anterior gradient homolog 3 (Xenopus laevis)	NM_207531|Agr3|403205|anterior gradient homolog 3 (Xenopus laevis)	AK053177|Agr3|403205|anterior gradient homolog 3 (Xenopus laevis)
mm9_v1_chr16_+_20141134_20141212	0.376323	AIRE.p2	NM_001033237|Yeats2|208146|YEATS domain containing 2	NM_001145930|Yeats2|208146|YEATS domain containing 2	NM_001145931|Yeats2|208146|YEATS domain containing 2	AK165933|Yeats2|208146|YEATS domain containing 2	AK160791|Yeats2|208146|YEATS domain containing 2
mm9_v1_chr19_+_12707680_12707797	0.375206	AIRE.p2	AK039262|Glyat|107146|glycine-N-acyltransferase	NM_145935|Glyat|107146|glycine-N-acyltransferase
mm9_v1_chr16_-_33967064_33967149	0.374601	AIRE.p2	BC003887|Umps|22247|uridine monophosphate synthetase	BC095981|Umps|22247|uridine monophosphate synthetase	AK159808|Umps|22247|uridine monophosphate synthetase	AK159955|Umps|22247|uridine monophosphate synthetase	AK035821|Umps|22247|uridine monophosphate synthetase	AK035997|Umps|22247|uridine monophosphate synthetase	AK090102|Umps|22247|uridine monophosphate synthetase	AK135187|Umps|22247|uridine monophosphate synthetase	NM_009471|Umps|22247|uridine monophosphate synthetase
mm9_v1_chr5_-_141178229_141178331	0.374239	AIRE.p2	AK029333|Iqce|74239|IQ motif containing E	BC059223|Iqce|74239|IQ motif containing E	NM_028833|Iqce|74239|IQ motif containing E
mm9_v1_chr10_+_90292453_90292587	0.372873	AIRE.p2	AK038609|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr8_+_86939262_86939275	0.371876	AIRE.p2	AK147288|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	NM_007578|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147277|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147498|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147697|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm9_v1_chr7_+_129210847_129210947	0.370877	AIRE.p2	AK017851|Ubfd1|28018|ubiquitin family domain containing 1
mm9_v1_chr6_+_21899978_21900058	0.370258	AIRE.p2	AK146145|Ing3|71777|inhibitor of growth family, member 3	AK030364|Ing3|71777|inhibitor of growth family, member 3
mm9_v1_chr16_+_17276434_17276446	0.370034	AIRE.p2	AB041601|Tmem191c|224019|transmembrane protein 191C
mm9_v1_chr9_+_43901941_43901990	0.369538	AIRE.p2	AK047204|Usp2|53376|ubiquitin specific peptidase 2	AK081112|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr9_+_57535734_57535814	0.368663	AIRE.p2	AK005000|Cyp1a1|13076|cytochrome P450, family 1, subfamily a, polypeptide 1	NM_009992|Cyp1a1|13076|cytochrome P450, family 1, subfamily a, polypeptide 1	BC125440|Cyp1a1|13076|cytochrome P450, family 1, subfamily a, polypeptide 1	BC125444|Cyp1a1|13076|cytochrome P450, family 1, subfamily a, polypeptide 1
mm9_v1_chrX_+_7944103_7944212	0.366545	AIRE.p2	AY244800|Ssxb9|387131|synovial sarcoma, X member B, breakpoint 9	NM_199066|Ssxb9|387131|synovial sarcoma, X member B, breakpoint 9	BC145782|Ssxb1|67985|synovial sarcoma, X member B, breakpoint 1	BC145784|Ssxb1|67985|synovial sarcoma, X member B, breakpoint 1
mm9_v1_chr7_+_50432957_50432973	0.366164	AIRE.p2	AK145615|Zfp936|668620|zinc finger protein 936	NM_001034893|Zfp936|668620|zinc finger protein 936	BC066874|Zfp936|668620|zinc finger protein 936
mm9_v1_chr3_-_137806320_137806370	0.364648	AIRE.p2	AK171129|C230076A16Rik|320496|RIKEN cDNA C230076A16 gene	AK039300|C230076A16Rik|320496|RIKEN cDNA C230076A16 gene	AK136278|Mttp|17777|microsomal triglyceride transfer protein	NM_001163457|Mttp|17777|microsomal triglyceride transfer protein
mm9_v1_chr3_-_65940346_65940359	0.364284	AIRE.p2	AB085189|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	AK013398|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	NM_028357|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)
mm9_v1_chr6_+_140572000_140572034	0.364201	AIRE.p2	BC025467|Aebp2|11569|AE binding protein 2
mm9_v1_chr12_+_70397723_70397748	0.359529	AIRE.p2	AK051418|Klhdc2|69554|kelch domain containing 2	BC005581|Klhdc2|69554|kelch domain containing 2
mm9_v1_chr13_-_21532756_21532926	0.358475	AIRE.p2	BC089360|Pgbd1|319207|piggyBac transposable element derived 1	BC059882|Pgbd1|319207|piggyBac transposable element derived 1	NM_001012311|Pgbd1|319207|piggyBac transposable element derived 1	NM_001162920|Pgbd1|319207|piggyBac transposable element derived 1	AK076559|Pgbd1|319207|piggyBac transposable element derived 1
mm9_v1_chr16_+_75593088_75593194	0.358162	AIRE.p2	BC050779|Rbm11|224344|RNA binding motif protein 11	NM_198302|Rbm11|224344|RNA binding motif protein 11	AK039297|Rbm11|224344|RNA binding motif protein 11
mm9_v1_chr5_-_37087142_37087184	0.357443	AIRE.p2	AK152987|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed	AK032804|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed	AK139370|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed
mm9_v1_chr4_+_98393438_98393452	0.355536	AIRE.p2	AB211064|L1td1|381591|LINE-1 type transposase domain containing 1	NM_001081202|L1td1|381591|LINE-1 type transposase domain containing 1	AK145814|L1td1|381591|LINE-1 type transposase domain containing 1
mm9_v1_chr3_+_105916283_105916305	0.355519	AIRE.p2	AK007573|Chia|81600|chitinase, acidic	AK008633|Chia|81600|chitinase, acidic	AK008650|Chia|81600|chitinase, acidic	AK008757|Chia|81600|chitinase, acidic	AK160173|Chia|81600|chitinase, acidic	BC034548|Chia|81600|chitinase, acidic	NM_023186|Chia|81600|chitinase, acidic	AF290003|Chia|81600|chitinase, acidic	DQ349202|Chia|81600|chitinase, acidic	EF094027|Chia|81600|chitinase, acidic	BC011134|Chia|81600|chitinase, acidic	AF154571|Chia|81600|chitinase, acidic
mm9_v1_chr2_+_84667174_84667190	0.355488	AIRE.p2	AK008088|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)	NM_013899|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)
mm9_v1_chr2_+_124978315_124978357	0.354114	AIRE.p2	AK052750|Slc12a1|20495|solute carrier family 12, member 1	AK085455|Slc12a1|20495|solute carrier family 12, member 1	AK128928|Slc12a1|20495|solute carrier family 12, member 1	NM_001079690|Slc12a1|20495|solute carrier family 12, member 1	NM_183354|Slc12a1|20495|solute carrier family 12, member 1	U20973|Slc12a1|20495|solute carrier family 12, member 1	U20974|Slc12a1|20495|solute carrier family 12, member 1	U20975|Slc12a1|20495|solute carrier family 12, member 1	BC016888|Slc12a1|20495|solute carrier family 12, member 1
mm9_v1_chr2_-_62321694_62321709	0.353918	AIRE.p2	BC012975|Gcg|14526|glucagon	AK007911|Gcg|14526|glucagon	AK148544|Gcg|14526|glucagon	AF276754|Gcg|14526|glucagon	NM_008100|Gcg|14526|glucagon
mm9_v1_chr1_-_162133574_162133640	0.351619	AIRE.p2	AK164472|Cacybp|12301|calcyclin binding protein
mm9_v1_chr15_+_12808445_12808493	0.350033	AIRE.p2	BC040801|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr8_-_108223598_108223720	0.349273	AIRE.p2	BC004682|Acd|497652|adrenocortical dysplasia
mm9_v1_chr3_-_129458190_129458239	0.346411	AIRE.p2	V00741|Egf|13645|epidermal growth factor	BC060741|Egf|13645|epidermal growth factor	BC092277|Egf|13645|epidermal growth factor	BC017681|Egf|13645|epidermal growth factor	AK084927|Egf|13645|epidermal growth factor	J00380|Egf|13645|epidermal growth factor	NM_010113|Egf|13645|epidermal growth factor
mm9_v1_chr17_+_55889248_55889329	0.345301	AIRE.p2	AK036459|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	NM_139138|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	AF396935|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	BC120538|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	BC120540|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	AK155935|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	AK037483|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	AY032690|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4
mm9_v1_chr18_-_62915799_62916000	0.344596	AIRE.p2	BC072581|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene	AK012381|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene	AK020725|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene
mm9_v1_chr5_-_65844386_65844460	0.344596	AIRE.p2	BC029314|1110003E01Rik|68552|RIKEN cDNA 1110003E01 gene
mm9_v1_chr3_+_82859422_82859482	0.343551	AIRE.p2	AK080068|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	AK077197|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	NM_016784|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	AK075993|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	AK076007|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)
mm9_v1_chr13_+_24904944_24904959	0.342731	AIRE.p2	AK088171|BC005537|79555|cDNA sequence BC005537
mm9_v1_chr9_-_114405661_114405661	0.342582	AIRE.p2	AK042013|Ccr4|12773|chemokine (C-C motif) receptor 4	BC117041|Ccr4|12773|chemokine (C-C motif) receptor 4	BC119171|Ccr4|12773|chemokine (C-C motif) receptor 4	NM_009916|Ccr4|12773|chemokine (C-C motif) receptor 4
mm9_v1_chr6_+_57020888_57020888	0.342103	AIRE.p2	BC132241|Vmn1r9|171203|vomeronasal 1 receptor 9	BC132577|Vmn1r9|171203|vomeronasal 1 receptor 9	NM_134185|Vmn1r9|171203|vomeronasal 1 receptor 9
mm9_v1_chr7_-_34981664_34981695	0.342034	AIRE.p2	BC115797|Pdcd2l|68079|programmed cell death 2-like	AK077948|Pdcd2l|68079|programmed cell death 2-like	NM_026549|Pdcd2l|68079|programmed cell death 2-like	AK151495|Pdcd2l|68079|programmed cell death 2-like	AK003339|Pdcd2l|68079|programmed cell death 2-like	AK154811|Pdcd2l|68079|programmed cell death 2-like
mm9_v1_chrX_-_7753254_7753306	0.34194	AIRE.p2	BC113777|Tbc1d25|209815|TBC1 domain family, member 25	BC128565|Tbc1d25|209815|TBC1 domain family, member 25	BC128566|Tbc1d25|209815|TBC1 domain family, member 25	AK078145|Tbc1d25|209815|TBC1 domain family, member 25	NM_001166437|Tbc1d25|209815|TBC1 domain family, member 25	NM_172478|Tbc1d25|209815|TBC1 domain family, member 25
mm9_v1_chr17_-_89599951_89600014	0.341818	AIRE.p2	AF095642|Fshr|14309|follicle stimulating hormone receptor	BC137990|Fshr|14309|follicle stimulating hormone receptor	BC137991|Fshr|14309|follicle stimulating hormone receptor	AK016635|Fshr|14309|follicle stimulating hormone receptor	NM_013523|Fshr|14309|follicle stimulating hormone receptor
mm9_v1_chr5_-_135115175_135115219	0.340296	AIRE.p2	AK169312|Eif4h|22384|eukaryotic translation initiation factor 4H	AK149841|Eif4h|22384|eukaryotic translation initiation factor 4H	AK136999|Eif4h|22384|eukaryotic translation initiation factor 4H	AK135390|Eif4h|22384|eukaryotic translation initiation factor 4H	AK166567|Eif4h|22384|eukaryotic translation initiation factor 4H	AK169353|Eif4h|22384|eukaryotic translation initiation factor 4H	NM_033561|Eif4h|22384|eukaryotic translation initiation factor 4H	AK045004|Eif4h|22384|eukaryotic translation initiation factor 4H	AK150088|Eif4h|22384|eukaryotic translation initiation factor 4H	BC014796|Eif4h|22384|eukaryotic translation initiation factor 4H	AK088818|Eif4h|22384|eukaryotic translation initiation factor 4H	AK168872|Eif4h|22384|eukaryotic translation initiation factor 4H	AK169407|Eif4h|22384|eukaryotic translation initiation factor 4H	AK132034|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr2_+_120967876_120967876	0.339144	AIRE.p2	BC050879|Adal|75894|adenosine deaminase-like	BC052048|Adal|75894|adenosine deaminase-like	NM_029475|Adal|75894|adenosine deaminase-like
mm9_v1_chr16_+_14906698_14906846	0.337506	AIRE.p2	AK042748|Efcab1|66793|EF hand calcium binding domain 1	AK015866|Efcab1|66793|EF hand calcium binding domain 1	AK030381|Efcab1|66793|EF hand calcium binding domain 1	AK038735|Efcab1|66793|EF hand calcium binding domain 1	AK077722|Efcab1|66793|EF hand calcium binding domain 1	AK017267|Efcab1|66793|EF hand calcium binding domain 1	NM_025769|Efcab1|66793|EF hand calcium binding domain 1	AK015426|Efcab1|66793|EF hand calcium binding domain 1	AK043519|Efcab1|66793|EF hand calcium binding domain 1	BC085167|Efcab1|66793|EF hand calcium binding domain 1
mm9_v1_chr13_+_85329102_85329221	0.337453	AIRE.p2	BC038861|Ccnh|66671|cyclin H	AK217691|Ccnh|66671|cyclin H
mm9_v1_chr6_-_49164469_49164732	0.337281	AIRE.p2	AB046173|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	BC045138|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	BC049082|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	AK011797|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	AK088465|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	AK011689|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3
mm9_v1_chr16_-_36666078_36666195	0.336215	AIRE.p2	AF065897|Cd86|12524|CD86 antigen	AF065898|Cd86|12524|CD86 antigen	AF065899|Cd86|12524|CD86 antigen	AF065900|Cd86|12524|CD86 antigen	S70108|Cd86|12524|CD86 antigen	BC013807|Cd86|12524|CD86 antigen	L25606|Cd86|12524|CD86 antigen	AK079513|Cd86|12524|CD86 antigen	AK155710|Cd86|12524|CD86 antigen	AK170054|Cd86|12524|CD86 antigen	NM_019388|Cd86|12524|CD86 antigen	AK172548|Cd86|12524|CD86 antigen	AK172686|Cd86|12524|CD86 antigen
mm9_v1_chr14_+_13073221_13073222	0.335267	AIRE.p2	AK134814|Ptprg|19270|protein tyrosine phosphatase, receptor type, G
mm9_v1_chr5_+_88237145_88237179	0.334895	AIRE.p2	AK164767|Csn1s2b|12992|casein alpha s2-like B	AK085744|Csn1s2b|12992|casein alpha s2-like B	NM_009973|Csn1s2b|12992|casein alpha s2-like B	AK164763|Csn1s2b|12992|casein alpha s2-like B	AK021343|Csn1s2b|12992|casein alpha s2-like B	AK052780|Csn1s2b|12992|casein alpha s2-like B	AK052789|Csn1s2b|12992|casein alpha s2-like B	AK085747|Csn1s2b|12992|casein alpha s2-like B	AK164768|Csn1s2b|12992|casein alpha s2-like B	AK021337|Csn1s2b|12992|casein alpha s2-like B	AK164795|Csn1s2b|12992|casein alpha s2-like B	BC002084|Csn1s2b|12992|casein alpha s2-like B	J00379|Csn1s2b|12992|casein alpha s2-like B	V00740|Csn1s2b|12992|casein alpha s2-like B
mm9_v1_chr1_+_123327668_123327740	0.33451	AIRE.p2	AK014621|Ccdc93|70829|coiled-coil domain containing 93	AK159415|Ccdc93|70829|coiled-coil domain containing 93	AK052300|Ccdc93|70829|coiled-coil domain containing 93	AK020306|Ccdc93|70829|coiled-coil domain containing 93	AK085701|Ccdc93|70829|coiled-coil domain containing 93	BC054083|Ccdc93|70829|coiled-coil domain containing 93
mm9_v1_chr14_+_21520038_21520084	0.333097	AIRE.p2	
mm9_v1_chr5_-_135727086_135727099	0.332838	AIRE.p2	AK021164|Fzd9|14371|frizzled homolog 9 (Drosophila)
mm9_v1_chr3_+_106904470_106904486	0.332781	AIRE.p2	AK044342|Kcna2|16490|potassium voltage-gated channel, shaker-related subfamily, member 2	NM_008417|Kcna2|16490|potassium voltage-gated channel, shaker-related subfamily, member 2
mm9_v1_chr7_+_129210948_129210953	0.330578	AIRE.p2	AK135258|Ubfd1|28018|ubiquitin family domain containing 1	AK140891|Ubfd1|28018|ubiquitin family domain containing 1
mm9_v1_chr9_-_58097422_58097566	0.330523	AIRE.p2	AK193824|Pml|18854|promyelocytic leukemia	AK156054|Pml|18854|promyelocytic leukemia	AK157346|Pml|18854|promyelocytic leukemia	AK156279|Pml|18854|promyelocytic leukemia	U33626|Pml|18854|promyelocytic leukemia	AK156175|Pml|18854|promyelocytic leukemia	BC020990|Pml|18854|promyelocytic leukemia	AK137538|Pml|18854|promyelocytic leukemia	AK157035|Pml|18854|promyelocytic leukemia
mm9_v1_chr10_+_5151833_5151833	0.329878	AIRE.p2	AK041626|Syne1|64009|synaptic nuclear envelope 1	NM_001079686|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr3_+_82859489_82859512	0.329305	AIRE.p2	BC006750|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	BC052895|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)
mm9_v1_chr10_-_30338152_30338232	0.328884	AIRE.p2	AK027974|Hint3|66847|histidine triad nucleotide binding protein 3	BC025065|Hint3|66847|histidine triad nucleotide binding protein 3	NM_025798|Hint3|66847|histidine triad nucleotide binding protein 3	AY040768|Hint3|66847|histidine triad nucleotide binding protein 3	AK007758|Hint3|66847|histidine triad nucleotide binding protein 3
mm9_v1_chr2_-_89892475_89892478	0.327509	AIRE.p2	BC111111|Olfr140|57272|olfactory receptor 140	BC141888|Olfr140|57272|olfactory receptor 140	NM_020515|Olfr140|57272|olfactory receptor 140
mm9_v1_chr4_+_86520317_86520392	0.327028	AIRE.p2	BC059819|Acer2|230379|alkaline ceramidase 2	NM_139306|Acer2|230379|alkaline ceramidase 2	AK085306|Acer2|230379|alkaline ceramidase 2	AF282864|Acer2|230379|alkaline ceramidase 2	AY312515|Acer2|230379|alkaline ceramidase 2
mm9_v1_chr6_-_47780444_47780540	0.326191	AIRE.p2	BC138897|Zfp786|330301|zinc finger protein 786	AK080438|Zfp786|330301|zinc finger protein 786	NM_177882|Zfp786|330301|zinc finger protein 786
mm9_v1_chr11_-_80191504_80191518	0.325401	AIRE.p2	BC044897|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	AK153246|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	AK078548|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	NM_027472|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene
mm9_v1_chr13_-_22133203_22133232	0.324379	AIRE.p2	BC052219|Hist1h4i|319158|histone cluster 1, H4i	BC125598|Hist1h4i|319158|histone cluster 1, H4i	BC125600|Hist1h4i|319158|histone cluster 1, H4i	BC019757|Hist1h4i|319158|histone cluster 1, H4i	BC092144|Hist1h4i|319158|histone cluster 1, H4i	NM_175656|Hist1h4i|319158|histone cluster 1, H4i	AK011560|Hist1h4i|319158|histone cluster 1, H4i
mm9_v1_chr18_-_38498564_38498663	0.323918	AIRE.p2	BC014800|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AK084247|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AF160355|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AK080610|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AK166069|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AF088903|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	NM_011937|Gnpda1|26384|glucosamine-6-phosphate deaminase 1
mm9_v1_chr3_-_153568808_153569101	0.323473	AIRE.p2	AF178957|Msh4|55993|mutS homolog 4 (E. coli)	AK161474|Msh4|55993|mutS homolog 4 (E. coli)	BC138163|Msh4|55993|mutS homolog 4 (E. coli)	BC145838|Msh4|55993|mutS homolog 4 (E. coli)	AY351585|Msh4|55993|mutS homolog 4 (E. coli)	AF298655|Msh4|55993|mutS homolog 4 (E. coli)	NM_031870|Msh4|55993|mutS homolog 4 (E. coli)
mm9_v1_chr2_-_155999858_155999931	0.321174	AIRE.p2	BC082607|Rbm39|170791|RNA binding motif protein 39
mm9_v1_chr5_+_148081701_148081706	0.319472	AIRE.p2	AK020261|Pdx1|18609|pancreatic and duodenal homeobox 1	BC103572|Pdx1|18609|pancreatic and duodenal homeobox 1	BC103581|Pdx1|18609|pancreatic and duodenal homeobox 1	BC103582|Pdx1|18609|pancreatic and duodenal homeobox 1	BC105642|Pdx1|18609|pancreatic and duodenal homeobox 1	NM_008814|Pdx1|18609|pancreatic and duodenal homeobox 1
mm9_v1_chr16_+_59471600_59471691	0.319096	AIRE.p2	NM_025910|Mina|67014|myc induced nuclear antigen	AK007810|Mina|67014|myc induced nuclear antigen	AK032595|Mina|67014|myc induced nuclear antigen	AK013451|Mina|67014|myc induced nuclear antigen	AK014426|Mina|67014|myc induced nuclear antigen	AK019117|Mina|67014|myc induced nuclear antigen	AK031671|Mina|67014|myc induced nuclear antigen	BC025109|Mina|67014|myc induced nuclear antigen	BC058242|Mina|67014|myc induced nuclear antigen
mm9_v1_chr9_-_54041231_54041328	0.316904	AIRE.p2	BC103670|Cyp19a1|13075|cytochrome P450, family 19, subfamily a, polypeptide 1	BC104489|Cyp19a1|13075|cytochrome P450, family 19, subfamily a, polypeptide 1	D00659|Cyp19a1|13075|cytochrome P450, family 19, subfamily a, polypeptide 1	NM_007810|Cyp19a1|13075|cytochrome P450, family 19, subfamily a, polypeptide 1	AK143323|Cyp19a1|13075|cytochrome P450, family 19, subfamily a, polypeptide 1
mm9_v1_chrX_+_20938001_20938025	0.313102	AIRE.p2	BC137827|Gm5124|331392|predicted pseudogene 5124
mm9_v1_chr12_+_45412878_45412942	0.312272	AIRE.p2	AK033938|Pnpla8|67452|patatin-like phospholipase domain containing 8
mm9_v1_chr8_+_114062242_114062242	0.311579	AIRE.p2	NM_001168623|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr8_-_63462080_63462110	0.31093	AIRE.p2	AK159698|Clcn3|12725|chloride channel 3	AK036501|Clcn3|12725|chloride channel 3	NM_007711|Clcn3|12725|chloride channel 3	NM_173873|Clcn3|12725|chloride channel 3	NM_173874|Clcn3|12725|chloride channel 3
mm9_v1_chr9_-_53475563_53475590	0.310763	AIRE.p2	BC019661|Cul5|75717|cullin 5	AK046030|Cul5|75717|cullin 5
mm9_v1_chr4_-_60594959_60595030	0.30655	AIRE.p2	EU882231|Mup10|100039008|major urinary protein 10	BC055353|LOC100048884|100048884|novel member of the major urinary protein (Mup) gene family	M28649|Mup1|17840|major urinary protein 1	NM_001122647|Mup10|100039008|major urinary protein 10
mm9_v1_chr1_-_137064124_137064257	0.304901	AIRE.p2	AK158275|Gpr37l1|171469|G protein-coupled receptor 37-like 1	NM_134438|Gpr37l1|171469|G protein-coupled receptor 37-like 1
mm9_v1_chr6_-_148937854_148937926	0.304442	AIRE.p2	AK143126|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr1_+_194014650_194014665	0.304026	AIRE.p2	AK147461|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm9_v1_chr12_+_79792521_79792674	0.303665	AIRE.p2	AK014851|Fam71d|70897|family with sequence similarity 71, member D	NM_027597|Fam71d|70897|family with sequence similarity 71, member D	NM_029069|Fam71d|70897|family with sequence similarity 71, member D	BC051149|Fam71d|70897|family with sequence similarity 71, member D	AK015802|Fam71d|70897|family with sequence similarity 71, member D
mm9_v1_chr6_-_18059054_18059060	0.302048	AIRE.p2	AF459789|Asz1|74068|ankyrin repeat, SAM and basic leucine zipper domain containing 1	AK016595|Asz1|74068|ankyrin repeat, SAM and basic leucine zipper domain containing 1	BC058859|Asz1|74068|ankyrin repeat, SAM and basic leucine zipper domain containing 1	NM_023729|Asz1|74068|ankyrin repeat, SAM and basic leucine zipper domain containing 1
mm9_v1_chr10_-_81090257_81090352	0.301437	AIRE.p2	AK013316|Sirt6|50721|sirtuin 6 (silent mating type information regulation 2, homolog) 6 (S. cerevisiae)	BC052763|Sirt6|50721|sirtuin 6 (silent mating type information regulation 2, homolog) 6 (S. cerevisiae)	NM_181586|Sirt6|50721|sirtuin 6 (silent mating type information regulation 2, homolog) 6 (S. cerevisiae)
mm9_v1_chr1_-_39708086_39708119	0.30023	AIRE.p2	AK134861|Creg2|263764|cellular repressor of E1A-stimulated genes 2
mm9_v1_chr4_-_44723311_44723311	0.29925	AIRE.p2	M97013|Pax5|18507|paired box gene 5	NM_008782|Pax5|18507|paired box gene 5
mm9_v1_chr7_+_13483153_13483228	0.299038	AIRE.p2	AK052559|Zscan22|232878|zinc finger and SCAN domain containing 22	AK085207|Zscan22|232878|zinc finger and SCAN domain containing 22	NM_001001447|Zscan22|232878|zinc finger and SCAN domain containing 22	AK163694|Zscan22|232878|zinc finger and SCAN domain containing 22	AK078591|Zscan22|232878|zinc finger and SCAN domain containing 22	BC026676|Zscan22|232878|zinc finger and SCAN domain containing 22
mm9_v1_chr18_+_30432499_30432592	0.298099	AIRE.p2	AK030578|Pik3c3|225326|phosphoinositide-3-kinase, class 3	BC024675|Pik3c3|225326|phosphoinositide-3-kinase, class 3	NM_181414|Pik3c3|225326|phosphoinositide-3-kinase, class 3	AK044997|Pik3c3|225326|phosphoinositide-3-kinase, class 3	BC057678|Pik3c3|225326|phosphoinositide-3-kinase, class 3	BC027029|Pik3c3|225326|phosphoinositide-3-kinase, class 3
mm9_v1_chr8_+_116657473_116657573	0.297796	AIRE.p2	AK088191|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	NM_024437|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	NM_024446|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AF338424|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK004924|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	BC069843|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK011172|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	BC033046|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK008824|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7
mm9_v1_chr15_+_99543952_99544029	0.296916	AIRE.p2	AK190322|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr12_-_79962445_79962624	0.294556	AIRE.p2	AF298810|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D	BC033457|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D	AK150981|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D	AK152367|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D	AK153250|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D	AK165761|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D	AK146448|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D	AK147910|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D	NM_023721|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D
mm9_v1_chr2_-_164063997_164064076	0.294543	AIRE.p2	AK090151|Svs2|53878|seminal vesicle secretory protein 2	AK144524|Svs2|53878|seminal vesicle secretory protein 2	AK165727|Svs2|53878|seminal vesicle secretory protein 2	AK136679|Svs2|53878|seminal vesicle secretory protein 2	AK035204|Svs2|53878|seminal vesicle secretory protein 2	AK040724|Svs2|53878|seminal vesicle secretory protein 2	AK090302|Svs2|53878|seminal vesicle secretory protein 2	AK144285|Svs2|53878|seminal vesicle secretory protein 2	AK144389|Svs2|53878|seminal vesicle secretory protein 2	AK144429|Svs2|53878|seminal vesicle secretory protein 2	AK165704|Svs2|53878|seminal vesicle secretory protein 2	AK165713|Svs2|53878|seminal vesicle secretory protein 2	AK165753|Svs2|53878|seminal vesicle secretory protein 2	AK165825|Svs2|53878|seminal vesicle secretory protein 2	BC107275|Svs2|53878|seminal vesicle secretory protein 2	BC107276|Svs2|53878|seminal vesicle secretory protein 2	NM_017390|Svs2|53878|seminal vesicle secretory protein 2
mm9_v1_chr19_+_55255374_55255445	0.294386	AIRE.p2	NM_009348|Tectb|21684|tectorin beta	X99806|Tectb|21684|tectorin beta	BC138888|Tectb|21684|tectorin beta	BC138889|Tectb|21684|tectorin beta
mm9_v1_chr13_+_21404071_21404118	0.294146	AIRE.p2	NM_145451|Gpx6|75512|glutathione peroxidase 6	BC013526|Gpx6|75512|glutathione peroxidase 6
mm9_v1_chr5_+_93000562_93000564	0.293916	AIRE.p2	AK050399|Fam47e|384198|family with sequence similarity 47, member E	AK144479|Fam47e|384198|family with sequence similarity 47, member E	NM_001033478|Fam47e|384198|family with sequence similarity 47, member E	NM_001170571|Fam47e|384198|family with sequence similarity 47, member E
mm9_v1_chr7_+_74792295_74792398	0.292275	AIRE.p2	AK086049|Ttc23|67009|tetratricopeptide repeat domain 23	AK165626|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168475|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168476|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168477|Ttc23|67009|tetratricopeptide repeat domain 23	NM_025905|Ttc23|67009|tetratricopeptide repeat domain 23	AK141754|Ttc23|67009|tetratricopeptide repeat domain 23	BC038179|Ttc23|67009|tetratricopeptide repeat domain 23	AK005431|Ttc23|67009|tetratricopeptide repeat domain 23	AK084269|Ttc23|67009|tetratricopeptide repeat domain 23	AK166555|Ttc23|67009|tetratricopeptide repeat domain 23	AK166613|Ttc23|67009|tetratricopeptide repeat domain 23
mm9_v1_chr4_+_86394436_86394546	0.291649	AIRE.p2	AK155220|Dennd4c|329877|DENN/MADD domain containing 4C	NM_001081014|Dennd4c|329877|DENN/MADD domain containing 4C	NM_184088|Dennd4c|329877|DENN/MADD domain containing 4C	AK154950|Dennd4c|329877|DENN/MADD domain containing 4C
mm9_v1_chr2_-_175032305_175032443	0.291194	AIRE.p2	BC086920|Gm6710|626832|predicted gene 6710	U62393|Gm6710|626832|predicted gene 6710	AK169456|Gm14391|665001|predicted gene 14391	NM_001164689|Gm6710|626832|predicted gene 6710	AK013829|Gm14391|665001|predicted gene 14391	NM_001099308|Gm14391|665001|predicted gene 14391	NM_001177480|Gm14391|665001|predicted gene 14391	AK013921|Gm6710|626832|predicted gene 6710
mm9_v1_chr10_+_101974855_101975051	0.29043	AIRE.p2	AK041688|Rassf9|237504|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	NM_146240|Rassf9|237504|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	BC028805|Rassf9|237504|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	AK086855|Rassf9|237504|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	AK033464|Rassf9|237504|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9
mm9_v1_chr7_-_133839152_133839297	0.2886	AIRE.p2	AK014753|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	BC145468|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	BC145688|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK053901|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	BC055909|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK010828|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK049139|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	NM_029420|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK010748|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)
mm9_v1_chr17_-_35268696_35268782	0.288497	AIRE.p2	AF207820|Apom|55938|apolipoprotein M	NM_018816|Apom|55938|apolipoprotein M	BC021597|Apom|55938|apolipoprotein M	AK004530|Apom|55938|apolipoprotein M
mm9_v1_chr2_-_93689902_93690028	0.287839	AIRE.p2	BC039569|Accs|329470|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)	NM_183220|Accs|329470|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)	AK011867|Accs|329470|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)	AK040509|Accs|329470|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)
mm9_v1_chr14_-_56402855_56402888	0.287601	AIRE.p2	AF442771|Adcy4|104110|adenylate cyclase 4	BC015299|Adcy4|104110|adenylate cyclase 4	NM_080435|Adcy4|104110|adenylate cyclase 4	AK161880|Adcy4|104110|adenylate cyclase 4	AK141767|Adcy4|104110|adenylate cyclase 4
mm9_v1_chr2_-_152169650_152169795	0.287149	AIRE.p2	AK146421|Trib3|228775|tribbles homolog 3 (Drosophila)	AK089931|Trib3|228775|tribbles homolog 3 (Drosophila)	AK144752|Trib3|228775|tribbles homolog 3 (Drosophila)	AJ514260|Trib3|228775|tribbles homolog 3 (Drosophila)	AK146340|Trib3|228775|tribbles homolog 3 (Drosophila)	AK132257|Trib3|228775|tribbles homolog 3 (Drosophila)	AK159760|Trib3|228775|tribbles homolog 3 (Drosophila)	AF358868|Trib3|228775|tribbles homolog 3 (Drosophila)	BC012955|Trib3|228775|tribbles homolog 3 (Drosophila)	AK160099|Trib3|228775|tribbles homolog 3 (Drosophila)	NM_175093|Trib3|228775|tribbles homolog 3 (Drosophila)
mm9_v1_chr2_+_84667196_84667249	0.28351	AIRE.p2	AF150090|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)	BC031448|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)	AK013546|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)
mm9_v1_chr15_+_32107043_32107046	0.282549	AIRE.p2	BC111811|Tas2r119|57254|taste receptor, type 2, member 119	BC128079|Tas2r119|57254|taste receptor, type 2, member 119	BC152359|Tas2r119|57254|taste receptor, type 2, member 119	NM_020503|Tas2r119|57254|taste receptor, type 2, member 119	BC128078|Tas2r119|57254|taste receptor, type 2, member 119
mm9_v1_chr9_-_53475519_53475552	0.28238	AIRE.p2	BC075710|Cul5|75717|cullin 5
mm9_v1_chr5_+_121364826_121364874	0.282357	AIRE.p2	NM_133893|Oas1d|100535|2'-5' oligoadenylate synthetase 1D	AK054465|Oas1d|100535|2'-5' oligoadenylate synthetase 1D	AK136001|Oas1d|100535|2'-5' oligoadenylate synthetase 1D	AY055829|Oas1d|100535|2'-5' oligoadenylate synthetase 1D	AB067532|Oas1d|100535|2'-5' oligoadenylate synthetase 1D	BC052835|Oas1d|100535|2'-5' oligoadenylate synthetase 1D
mm9_v1_chr2_-_129094163_129094313	0.282336	AIRE.p2	AK008278|Ckap2l|70466|cytoskeleton associated protein 2-like
mm9_v1_chr8_-_3154851_3154868	0.279402	AIRE.p2	AK085344|Insr|16337|insulin receptor
mm9_v1_chr16_-_15863310_15863463	0.277692	AIRE.p2	BC027550|Mzt2|72083|mitotic spindle organizing protein 2	AK010544|Mzt2|72083|mitotic spindle organizing protein 2	NM_029354|Mzt2|72083|mitotic spindle organizing protein 2	AK011255|Mzt2|72083|mitotic spindle organizing protein 2
mm9_v1_chr2_+_80478960_80478972	0.277198	AIRE.p2	NM_027091|Nup35|69482|nucleoporin 35	AK089997|Nup35|69482|nucleoporin 35
mm9_v1_chr10_+_60880719_60880719	0.276923	AIRE.p2	NM_013611|Nodal|18119|nodal	X70514|Nodal|18119|nodal
mm9_v1_chr18_+_36953553_36953593	0.276391	AIRE.p2	BC024881|Zmat2|66492|zinc finger, matrin type 2	NM_025594|Zmat2|66492|zinc finger, matrin type 2	AK012091|Zmat2|66492|zinc finger, matrin type 2	BC089501|Zmat2|66492|zinc finger, matrin type 2	AK008717|Zmat2|66492|zinc finger, matrin type 2
mm9_v1_chr10_+_59569206_59569342	0.275609	AIRE.p2	AK122233|Spock2|94214|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2
mm9_v1_chr11_-_54674080_54674223	0.275131	AIRE.p2	NM_029327|Lyrm7|75530|LYR motif containing 7	BC139403|Lyrm7|75530|LYR motif containing 7	BC139406|Lyrm7|75530|LYR motif containing 7
mm9_v1_chr4_-_15076940_15076952	0.274812	AIRE.p2	AK050307|Necab1|69352|N-terminal EF-hand calcium binding protein 1
mm9_v1_chr9_-_7872896_7873169	0.27458	AIRE.p2	AK172636|Birc3|11796|baculoviral IAP repeat-containing 3	BC011338|Birc3|11796|baculoviral IAP repeat-containing 3	U88908|Birc3|11796|baculoviral IAP repeat-containing 3	AK162108|Birc3|11796|baculoviral IAP repeat-containing 3	NM_007464|Birc3|11796|baculoviral IAP repeat-containing 3
mm9_v1_chr1_-_138850206_138850206	0.272417	AIRE.p2	DQ133942|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	NM_001159769|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2
mm9_v1_chr4_+_88439645_88439645	0.269554	AIRE.p2	NM_001085533|Gm13275|545652|predicted gene 13275
mm9_v1_chr12_+_88943636_88943653	0.269311	AIRE.p2	AK145346|Oog1|193322|oogenesin 1	AK087852|Oog1|193322|oogenesin 1	AK135749|Oog1|193322|oogenesin 1	AK143386|Oog1|193322|oogenesin 1	NM_178657|Oog1|193322|oogenesin 1	BC086484|Oog1|193322|oogenesin 1
mm9_v1_chr16_+_3908975_3909105	0.268575	AIRE.p2	BC024910|Cluap1|76779|clusterin associated protein 1	NM_029738|Cluap1|76779|clusterin associated protein 1	AK009540|Cluap1|76779|clusterin associated protein 1	AK134648|Cluap1|76779|clusterin associated protein 1	AK166050|Cluap1|76779|clusterin associated protein 1	AK011846|Cluap1|76779|clusterin associated protein 1
mm9_v1_chr9_-_53475591_53475593	0.267902	AIRE.p2	AK018437|Cul5|75717|cullin 5
mm9_v1_chr3_+_88639149_88639197	0.266833	AIRE.p2	NM_027389|Gon4l|76022|gon-4-like (C.elegans)	AK147575|Gon4l|76022|gon-4-like (C.elegans)	BC037148|Gon4l|76022|gon-4-like (C.elegans)
mm9_v1_chr1_+_53353919_53353984	0.266282	AIRE.p2	NM_145517|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	AK050385|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	AK052927|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	AK077562|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	BC023695|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	BC025572|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	BC012315|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)
mm9_v1_chr8_+_23734514_23734514	0.266215	AIRE.p2	BC018400|Dkk4|234130|dickkopf homolog 4 (Xenopus laevis)	NM_145592|Dkk4|234130|dickkopf homolog 4 (Xenopus laevis)
mm9_v1_chr5_-_125870386_125870439	0.265114	AIRE.p2	NM_019639|Ubc|22190|ubiquitin C	AK004727|Ubc|22190|ubiquitin C
mm9_v1_chr14_-_70107206_70107408	0.264234	AIRE.p2	BC052536|R3hcc1|71843|R3H domain and coiled-coil containing 1	BC059860|R3hcc1|71843|R3H domain and coiled-coil containing 1	AK032854|R3hcc1|71843|R3H domain and coiled-coil containing 1	AK156843|R3hcc1|71843|R3H domain and coiled-coil containing 1	NM_001146012|R3hcc1|71843|R3H domain and coiled-coil containing 1
mm9_v1_chr9_+_3404047_3404117	0.262267	AIRE.p2	BC125483|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC125485|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK083386|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK045423|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	NM_027545|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK014327|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK031423|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC100536|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC051218|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC043480|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)
mm9_v1_chr16_+_16870983_16871175	0.261626	AIRE.p2	BC031723|Top3b|21976|topoisomerase (DNA) III beta	NM_011624|Top3b|21976|topoisomerase (DNA) III beta	AK079765|Top3b|21976|topoisomerase (DNA) III beta
mm9_v1_chr18_+_5046584_5046587	0.260797	AIRE.p2	AF317422|Svil|225115|supervillin	AF317423|Svil|225115|supervillin	NM_153153|Svil|225115|supervillin	HQ259291|Svil|225115|supervillin
mm9_v1_chr19_+_12708001_12708022	0.260392	AIRE.p2	AK143803|Glyat|107146|glycine-N-acyltransferase	AK143901|Glyat|107146|glycine-N-acyltransferase	BC010799|Glyat|107146|glycine-N-acyltransferase	BC015294|Glyat|107146|glycine-N-acyltransferase
mm9_v1_chr11_+_49988344_49988383	0.258913	AIRE.p2	AK019392|3010026O09Rik|68067|RIKEN cDNA 3010026O09 gene	NM_026543|3010026O09Rik|68067|RIKEN cDNA 3010026O09 gene	BC028428|3010026O09Rik|68067|RIKEN cDNA 3010026O09 gene	AK003636|3010026O09Rik|68067|RIKEN cDNA 3010026O09 gene
mm9_v1_chr2_+_175868350_175868436	0.258434	AIRE.p2	AK013921|Gm6710|626832|predicted gene 6710	AK013829|Gm14391|665001|predicted gene 14391	NM_001099308|Gm14391|665001|predicted gene 14391	NM_001177480|Gm14391|665001|predicted gene 14391	NM_001164689|Gm6710|626832|predicted gene 6710	AK169456|Gm14391|665001|predicted gene 14391	U62393|Gm6710|626832|predicted gene 6710
mm9_v1_chr6_-_135260380_135260422	0.258113	AIRE.p2	AF307146|Pbp2|76400|phosphatidylethanolamine binding protein 2	AF307147|Pbp2|76400|phosphatidylethanolamine binding protein 2	BC107334|Pbp2|76400|phosphatidylethanolamine binding protein 2	BC107335|Pbp2|76400|phosphatidylethanolamine binding protein 2	NM_029595|Pbp2|76400|phosphatidylethanolamine binding protein 2	AK006258|Pbp2|76400|phosphatidylethanolamine binding protein 2
mm9_v1_chr15_-_98748371_98748661	0.256893	AIRE.p2	AY052398|Lmbr1l|74775|limb region 1 like	AK003656|Lmbr1l|74775|limb region 1 like	BC023397|Lmbr1l|74775|limb region 1 like	AK170328|Lmbr1l|74775|limb region 1 like	AK143891|Lmbr1l|74775|limb region 1 like	AK030589|Lmbr1l|74775|limb region 1 like	AK049110|Lmbr1l|74775|limb region 1 like	NM_029098|Lmbr1l|74775|limb region 1 like	AK154968|Lmbr1l|74775|limb region 1 like
mm9_v1_chr3_-_112959644_112959644	0.256798	AIRE.p2	NM_001190403|Amy2b|545562|amylase 2b	NM_001190404|Amy2b|545562|amylase 2b
mm9_v1_chr5_-_87919883_87919895	0.254712	AIRE.p2	BC048926|Ugt2a1|94215|UDP glucuronosyltransferase 2 family, polypeptide A1	AK140757|Ugt2a1|94215|UDP glucuronosyltransferase 2 family, polypeptide A1	NM_053184|Ugt2a1|94215|UDP glucuronosyltransferase 2 family, polypeptide A1
mm9_v1_chrX_+_160935834_160935842	0.251718	AIRE.p2	AK005878|Asb9|69299|ankyrin repeat and SOCS box-containing 9	NM_027027|Asb9|69299|ankyrin repeat and SOCS box-containing 9	BC061038|Asb9|69299|ankyrin repeat and SOCS box-containing 9
mm9_v1_chr13_-_61265507_61265616	0.251535	AIRE.p2	AY014778|Ctsr|56835|cathepsin R	BC100338|Ctsr|56835|cathepsin R	AF245399|Ctsr|56835|cathepsin R	NM_020284|Ctsr|56835|cathepsin R	AK014432|Ctsr|56835|cathepsin R	AK005429|Ctsr|56835|cathepsin R	AY943668|Ctsr|56835|cathepsin R
mm9_v1_chrY_+_234230_234474	0.251029	AIRE.p2	AK047790|Kdm5d|20592|lysine (K)-specific demethylase 5D	NM_011419|Kdm5d|20592|lysine (K)-specific demethylase 5D	AK141096|Kdm5d|20592|lysine (K)-specific demethylase 5D	AK140971|Kdm5d|20592|lysine (K)-specific demethylase 5D	BC060077|Kdm5d|20592|lysine (K)-specific demethylase 5D	AF127244|Kdm5d|20592|lysine (K)-specific demethylase 5D	AB221607|Kdm5d|20592|lysine (K)-specific demethylase 5D	Z29652|Kdm5d|20592|lysine (K)-specific demethylase 5D
mm9_v1_chr6_+_140571183_140571183	0.250986	AIRE.p2	AK029011|Aebp2|11569|AE binding protein 2	NM_178803|Aebp2|11569|AE binding protein 2
mm9_v1_chr1_+_69873535_69873574	0.250709	AIRE.p2	AK015884|Spag16|66722|sperm associated antigen 16	BC120668|Spag16|66722|sperm associated antigen 16	BC145006|Spag16|66722|sperm associated antigen 16	AF490391|Spag16|66722|sperm associated antigen 16	NM_029160|Spag16|66722|sperm associated antigen 16	AK083083|Spag16|66722|sperm associated antigen 16
mm9_v1_chr2_+_80479021_80479037	0.250339	AIRE.p2	AK009187|Nup35|69482|nucleoporin 35	AK145775|Nup35|69482|nucleoporin 35
mm9_v1_chr2_-_9981155_9981246	0.249479	AIRE.p2	AK187037|Atp5c1|11949|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
mm9_v1_chr3_+_86790507_86790507	0.249062	AIRE.p2	BC057149|Cd1d2|12480|CD1d2 antigen	NM_007640|Cd1d2|12480|CD1d2 antigen
mm9_v1_chr3_-_57496415_57496458	0.247826	AIRE.p2	AK134766|Gm410|242037|predicted gene 410	AK138483|Gm410|242037|predicted gene 410	NM_001033349|Gm410|242037|predicted gene 410
mm9_v1_chr10_+_79457716_79457753	0.247745	AIRE.p2	AK209768|Cnn2|12798|calponin 2	AK210808|Cnn2|12798|calponin 2	AK208961|Cnn2|12798|calponin 2	AK209669|Cnn2|12798|calponin 2	AK218447|Cnn2|12798|calponin 2	AK219047|Cnn2|12798|calponin 2
mm9_v1_chr1_-_84741605_84741713	0.247056	AIRE.p2	BC004085|Trip12|14897|thyroid hormone receptor interactor 12
mm9_v1_chr8_-_72425538_72425567	0.247007	AIRE.p2	AF286698|Ndufa13|67184|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	BC037149|Ndufa13|67184|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	AK003012|Ndufa13|67184|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	AK010517|Ndufa13|67184|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	AK012422|Ndufa13|67184|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	BC055435|Ndufa13|67184|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13
mm9_v1_chr4_+_12067263_12067419	0.246933	AIRE.p2	NM_028226|Rbm12b|72397|RNA binding motif protein 12B	AK030861|Rbm12b|72397|RNA binding motif protein 12B
mm9_v1_chr17_-_13102778_13102865	0.246011	AIRE.p2	BC158033|Pnldc1|240023|poly(A)-specific ribonuclease (PARN)-like domain containing 1	BC172002|Pnldc1|240023|poly(A)-specific ribonuclease (PARN)-like domain containing 1	NM_001034866|Pnldc1|240023|poly(A)-specific ribonuclease (PARN)-like domain containing 1
mm9_v1_chr11_-_50641191_50641232	0.245865	AIRE.p2	AK086760|Zfp354c|30944|zinc finger protein 354C	AK220194|Zfp354c|30944|zinc finger protein 354C	AK145882|Zfp354c|30944|zinc finger protein 354C	BC079908|Zfp354c|30944|zinc finger protein 354C	NM_013922|Zfp354c|30944|zinc finger protein 354C
mm9_v1_chr3_+_129539656_129539716	0.245145	AIRE.p2	NM_007686|Cfi|12630|complement component factor i	U47810|Cfi|12630|complement component factor i	BC150751|Cfi|12630|complement component factor i
mm9_v1_chr6_+_30756073_30756380	0.244852	AIRE.p2	AK031986|Copg2as2|100044236|coatomer protein complex, subunit gamma 2, antisense 2	AK039295|Copg2as2|100044236|coatomer protein complex, subunit gamma 2, antisense 2	AK087162|Copg2as2|100044236|coatomer protein complex, subunit gamma 2, antisense 2	AK086806|Copg2as2|100044236|coatomer protein complex, subunit gamma 2, antisense 2
mm9_v1_chr17_-_65944300_65944335	0.24453	AIRE.p2	AK149040|Vapa|30960|vesicle-associated membrane protein, associated protein A
mm9_v1_chr9_-_75407338_75407491	0.244402	AIRE.p2	AF237630|Tmod3|50875|tropomodulin 3	AF177172|Tmod3|50875|tropomodulin 3	BC082595|Tmod3|50875|tropomodulin 3	AK167723|Tmod3|50875|tropomodulin 3	AK017725|Tmod3|50875|tropomodulin 3	AK050372|Tmod3|50875|tropomodulin 3	AK082971|Tmod3|50875|tropomodulin 3	AK147017|Tmod3|50875|tropomodulin 3	AK169218|Tmod3|50875|tropomodulin 3	NM_016963|Tmod3|50875|tropomodulin 3
mm9_v1_chr2_+_158201373_158201515	0.244206	AIRE.p2	NM_175692|Snhg11|319317|small nucleolar RNA host gene 11	AK157790|Snhg11|319317|small nucleolar RNA host gene 11	AK080745|Snhg11|319317|small nucleolar RNA host gene 11	AK133939|Snhg11|319317|small nucleolar RNA host gene 11	AK138473|Snhg11|319317|small nucleolar RNA host gene 11	BC049241|Snhg11|319317|small nucleolar RNA host gene 11	BC030414|Snhg11|319317|small nucleolar RNA host gene 11
mm9_v1_chr19_-_44220840_44220957	0.242799	AIRE.p2	BC065806|Bloc1s2|73689|biogenesis of lysosome-related organelles complex-1, subunit 2	AK010745|Bloc1s2|73689|biogenesis of lysosome-related organelles complex-1, subunit 2	BC048500|Bloc1s2|73689|biogenesis of lysosome-related organelles complex-1, subunit 2	AK145313|Bloc1s2|73689|biogenesis of lysosome-related organelles complex-1, subunit 2	NM_028607|Bloc1s2|73689|biogenesis of lysosome-related organelles complex-1, subunit 2
mm9_v1_chr11_+_46385014_46385159	0.242169	AIRE.p2	NM_001025435|BC053393|407814|cDNA sequence BC053393	BC052651|BC053393|407814|cDNA sequence BC053393	AK166706|BC053393|407814|cDNA sequence BC053393	AK166838|BC053393|407814|cDNA sequence BC053393	AK145729|BC053393|407814|cDNA sequence BC053393	AK140690|BC053393|407814|cDNA sequence BC053393
mm9_v1_chr10_-_62255007_62255115	0.242114	AIRE.p2	BC034174|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC051052|Ccar1|67500|cell division cycle and apoptosis regulator 1	NM_026201|Ccar1|67500|cell division cycle and apoptosis regulator 1
mm9_v1_chr7_-_110809831_110809831	0.241019	AIRE.p2	BC119275|Olfr623|259126|olfactory receptor 623	NM_147122|Olfr623|259126|olfactory receptor 623
mm9_v1_chr14_-_20642973_20643066	0.240824	AIRE.p2	AK162433|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK148686|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK162070|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK160555|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK012451|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	BC023932|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	BC096571|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK012460|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK003732|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	BC048357|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK012486|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	NM_026528|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK160696|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene
mm9_v1_chr10_-_116333934_116333934	0.239844	AIRE.p2	AK144383|Gm239|237558|predicted gene 239	AK144411|Gm239|237558|predicted gene 239	NM_001033333|Gm239|237558|predicted gene 239
mm9_v1_chr12_-_60305853_60305917	0.238521	AIRE.p2	BC006669|Fbxo33|70611|F-box protein 33
mm9_v1_chr8_+_106774774_106774855	0.237511	AIRE.p2	AK005577|Cklf|75458|chemokine-like factor	AY046597|Cklf|75458|chemokine-like factor	NM_029295|Cklf|75458|chemokine-like factor	AK046397|Cklf|75458|chemokine-like factor	AK086063|Cklf|75458|chemokine-like factor	AK032759|Cklf|75458|chemokine-like factor	AK050112|Cklf|75458|chemokine-like factor	NM_001037841|Cklf|75458|chemokine-like factor	BC027684|Cklf|75458|chemokine-like factor	AF401530|Cklf|75458|chemokine-like factor	AF401531|Cklf|75458|chemokine-like factor	AY047360|Cklf|75458|chemokine-like factor
mm9_v1_chr9_+_123429291_123429490	0.237383	AIRE.p2	AK180316|Limd1|29806|LIM domains containing 1	AK212225|Limd1|29806|LIM domains containing 1	AK215267|Limd1|29806|LIM domains containing 1	AK215631|Limd1|29806|LIM domains containing 1	AK216846|Limd1|29806|LIM domains containing 1	AK220081|Limd1|29806|LIM domains containing 1	AK210611|Limd1|29806|LIM domains containing 1
mm9_v1_chr2_+_163843744_163843775	0.236988	AIRE.p2	
mm9_v1_chr7_-_138465593_138465805	0.23632	AIRE.p2	BC140992|Cuzd1|16433|CUB and zona pellucida-like domains 1	NM_008411|Cuzd1|16433|CUB and zona pellucida-like domains 1	U69699|Cuzd1|16433|CUB and zona pellucida-like domains 1
mm9_v1_chr3_+_156224757_156225137	0.236105	AIRE.p2	AK147253|Negr1|320840|neuronal growth regulator 1	NM_001039094|Negr1|320840|neuronal growth regulator 1	AK035218|Negr1|320840|neuronal growth regulator 1	NM_177274|Negr1|320840|neuronal growth regulator 1	AK030503|Negr1|320840|neuronal growth regulator 1	BC146005|Negr1|320840|neuronal growth regulator 1	BC146007|Negr1|320840|neuronal growth regulator 1	AK142298|Negr1|320840|neuronal growth regulator 1	AJ487032|Negr1|320840|neuronal growth regulator 1
mm9_v1_chr18_+_45428413_45428658	0.236101	AIRE.p2	AK076494|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK033158|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr11_-_80191456_80191500	0.235843	AIRE.p2	AK135352|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	AK017667|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	BC055024|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene
mm9_v1_chr13_+_97837240_97837241	0.235009	AIRE.p2	BC084589|Fam169a|320557|family with sequence similarity 169, member A	NM_001146045|Fam169a|320557|family with sequence similarity 169, member A
mm9_v1_chr6_-_130336891_130336991	0.234766	AIRE.p2	AY078436|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	NM_016659|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	AF419250|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	AF444273|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1
mm9_v1_chr19_-_7877065_7877081	0.23333	AIRE.p2	AJ132857|BC014805|236149|cDNA sequence BC014805
mm9_v1_chr16_+_41532938_41533160	0.232064	AIRE.p2	BC059067|Lsamp|268890|limbic system-associated membrane protein	AK158702|Lsamp|268890|limbic system-associated membrane protein	AK030681|Lsamp|268890|limbic system-associated membrane protein
mm9_v1_chr2_-_29643157_29643203	0.231971	AIRE.p2	BC024075|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK167294|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	BC015285|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK050583|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK087102|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK050587|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK081579|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK043949|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	NM_145520|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)
mm9_v1_chr11_+_3863948_3864033	0.231466	AIRE.p2	AK029075|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	NM_022889|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	BC004844|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	BC011142|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	AK088831|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	AF289539|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	AK220142|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)
mm9_v1_chr19_-_7180162_7180222	0.230214	AIRE.p2	AY495668|Flrt1|396184|fibronectin leucine rich transmembrane protein 1	AK031503|Flrt1|396184|fibronectin leucine rich transmembrane protein 1	NM_201411|Flrt1|396184|fibronectin leucine rich transmembrane protein 1	BC070403|Flrt1|396184|fibronectin leucine rich transmembrane protein 1
mm9_v1_chr15_+_101278175_101278219	0.229235	AIRE.p2	NM_025487|1700011A15Rik|66322|RIKEN cDNA 1700011A15 gene	BC048463|1700011A15Rik|66322|RIKEN cDNA 1700011A15 gene	AK007046|1700011A15Rik|66322|RIKEN cDNA 1700011A15 gene	AK005855|1700011A15Rik|66322|RIKEN cDNA 1700011A15 gene
mm9_v1_chr6_-_145167481_145167570	0.228083	AIRE.p2	BC014700|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	BC031623|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
mm9_v1_chr5_-_100588826_100588826	0.227719	AIRE.p2	BC055321|Tmem150c|231503|transmembrane protein 150C	NM_182841|Tmem150c|231503|transmembrane protein 150C
mm9_v1_chr11_-_5607667_5607715	0.227427	AIRE.p2	BC029262|Mrps24|64660|mitochondrial ribosomal protein S24	AK010590|Mrps24|64660|mitochondrial ribosomal protein S24	AK003117|Mrps24|64660|mitochondrial ribosomal protein S24	AK007338|Mrps24|64660|mitochondrial ribosomal protein S24	AK014099|Mrps24|64660|mitochondrial ribosomal protein S24	AK012461|Mrps24|64660|mitochondrial ribosomal protein S24	NM_026080|Mrps24|64660|mitochondrial ribosomal protein S24
mm9_v1_chr16_-_62846777_62846879	0.226764	AIRE.p2	AK016794|Arl13b|68146|ADP-ribosylation factor-like 13B	AK020859|Arl13b|68146|ADP-ribosylation factor-like 13B	AK051159|Arl13b|68146|ADP-ribosylation factor-like 13B	AK021270|Arl13b|68146|ADP-ribosylation factor-like 13B	NM_026577|Arl13b|68146|ADP-ribosylation factor-like 13B
mm9_v1_chr10_+_80720062_80720086	0.224945	AIRE.p2	X89723|Matk|17179|megakaryocyte-associated tyrosine kinase	BC060086|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr16_-_15848722_15848771	0.224709	AIRE.p2	
mm9_v1_chr19_+_46227052_46227083	0.223832	AIRE.p2	BC082336|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1	AK019933|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1	BC011335|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1
mm9_v1_chr1_+_17591981_17592085	0.223569	AIRE.p2	AK030960|Pi15|94227|peptidase inhibitor 15	NM_053191|Pi15|94227|peptidase inhibitor 15	AK040961|Pi15|94227|peptidase inhibitor 15	AF329196|Pi15|94227|peptidase inhibitor 15	BC116705|Pi15|94227|peptidase inhibitor 15
mm9_v1_chr5_-_8367951_8368174	0.221673	AIRE.p2	BC117707|Adam22|11496|a disintegrin and metallopeptidase domain 22	BC117708|Adam22|11496|a disintegrin and metallopeptidase domain 22	HM004095|Adam22|11496|a disintegrin and metallopeptidase domain 22	AB009674|Adam22|11496|a disintegrin and metallopeptidase domain 22	AK082335|Adam22|11496|a disintegrin and metallopeptidase domain 22	NM_001007220|Adam22|11496|a disintegrin and metallopeptidase domain 22	NM_001007221|Adam22|11496|a disintegrin and metallopeptidase domain 22	NM_001098225|Adam22|11496|a disintegrin and metallopeptidase domain 22	AK042962|Adam22|11496|a disintegrin and metallopeptidase domain 22
mm9_v1_chr11_+_4795308_4795373	0.221465	AIRE.p2	AK040311|Thoc5|107829|THO complex 5	AK050734|Thoc5|107829|THO complex 5	NM_172438|Thoc5|107829|THO complex 5	BC039758|Thoc5|107829|THO complex 5	AK087099|Thoc5|107829|THO complex 5
mm9_v1_chr2_-_119586142_119586166	0.218992	AIRE.p2	BC141299|Ltk|17005|leukocyte tyrosine kinase	M90470|Ltk|17005|leukocyte tyrosine kinase	NM_203345|Ltk|17005|leukocyte tyrosine kinase	NM_206942|Ltk|17005|leukocyte tyrosine kinase
mm9_v1_chr9_-_55131378_55131431	0.216552	AIRE.p2	AK041077|Nrg4|83961|neuregulin 4	AK080161|Nrg4|83961|neuregulin 4	BC034839|Nrg4|83961|neuregulin 4	AK080058|Nrg4|83961|neuregulin 4	AK080089|Nrg4|83961|neuregulin 4	NM_032002|Nrg4|83961|neuregulin 4
mm9_v1_chr4_-_61443185_61443257	0.216372	AIRE.p2	EU882232|Mup19|100189605|major urinary protein 19	AJ309921|Mup10|100039008|major urinary protein 10	BC012221|Mup1|17840|major urinary protein 1	BC013649|Mup1|17840|major urinary protein 1	BC055353|LOC100048884|100048884|novel member of the major urinary protein (Mup) gene family	BC106092|Mup1|17840|major urinary protein 1	BC037152|Mup1|17840|major urinary protein 1	BC091775|Mup1|17840|major urinary protein 1	M28649|Mup1|17840|major urinary protein 1	AK013259|Mup19|100189605|major urinary protein 19	NM_001135127|Mup19|100189605|major urinary protein 19
mm9_v1_chr19_-_7289788_7289790	0.216142	AIRE.p2	
mm9_v1_chr4_+_155484072_155484109	0.214836	AIRE.p2	AK029276|9430015G10Rik|230996|RIKEN cDNA 9430015G10 gene	BC004010|9430015G10Rik|230996|RIKEN cDNA 9430015G10 gene	NM_145557|9430015G10Rik|230996|RIKEN cDNA 9430015G10 gene	NM_177205|9430015G10Rik|230996|RIKEN cDNA 9430015G10 gene	AK034620|9430015G10Rik|230996|RIKEN cDNA 9430015G10 gene
mm9_v1_chr19_-_60302398_60302548	0.214201	AIRE.p2	BC061459|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed	AK162079|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed
mm9_v1_chr12_-_56181090_56181103	0.213848	AIRE.p2	BC056967|2700097O09Rik|72658|RIKEN cDNA 2700097O09 gene	AK079348|2700097O09Rik|72658|RIKEN cDNA 2700097O09 gene	AK012621|2700097O09Rik|72658|RIKEN cDNA 2700097O09 gene	NM_028314|2700097O09Rik|72658|RIKEN cDNA 2700097O09 gene
mm9_v1_chr16_-_96413824_96413863	0.213236	AIRE.p2	AK031481|Lca5l|385668|Leber congenital amaurosis 5-like	AK029554|Lca5l|385668|Leber congenital amaurosis 5-like	AK133316|Lca5l|385668|Leber congenital amaurosis 5-like	NM_001001492|Lca5l|385668|Leber congenital amaurosis 5-like
mm9_v1_chr9_+_7628229_7628230	0.2113	AIRE.p2	BC152335|Mmp20|30800|matrix metallopeptidase 20 (enamelysin)	BC152336|Mmp20|30800|matrix metallopeptidase 20 (enamelysin)	AF155933|Mmp20|30800|matrix metallopeptidase 20 (enamelysin)	NM_013903|Mmp20|30800|matrix metallopeptidase 20 (enamelysin)
mm9_v1_chr3_+_53267587_53267689	0.21039	AIRE.p2	AK034174|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene
mm9_v1_chr11_+_60541880_60542010	0.210267	AIRE.p2	NM_001009927|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	AK156917|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	AK171444|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	BC088984|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)
mm9_v1_chr4_-_88322758_88322759	0.209636	AIRE.p2	BC114392|Gm13280|230398|predicted gene 13280	NM_206867|Gm13280|230398|predicted gene 13280
mm9_v1_chr9_+_121619443_121619529	0.209417	AIRE.p2	AK049702|Deb1|26901|differentially expressed in B16F10 1	AK003863|Deb1|26901|differentially expressed in B16F10 1	BC027548|Deb1|26901|differentially expressed in B16F10 1	NM_026794|Deb1|26901|differentially expressed in B16F10 1
mm9_v1_chr16_+_43890014_43890036	0.209263	AIRE.p2	NM_027801|2610015P09Rik|212153|RIKEN cDNA 2610015P09 gene
mm9_v1_chr16_-_79091336_79091341	0.207287	AIRE.p2	NM_008941|Tmprss15|19146|transmembrane protease, serine 15	U73378|Tmprss15|19146|transmembrane protease, serine 15	BC117917|Tmprss15|19146|transmembrane protease, serine 15	BC117918|Tmprss15|19146|transmembrane protease, serine 15	AK033582|Tmprss15|19146|transmembrane protease, serine 15	NM_178855|Tmprss15|19146|transmembrane protease, serine 15
mm9_v1_chr8_-_25686797_25686823	0.206649	AIRE.p2	BC026393|Ido2|209176|indoleamine 2,3-dioxygenase 2	EF137182|Ido2|209176|indoleamine 2,3-dioxygenase 2	NM_145949|Ido2|209176|indoleamine 2,3-dioxygenase 2
mm9_v1_chr10_-_30338265_30338290	0.206247	AIRE.p2	AK002482|Hint3|66847|histidine triad nucleotide binding protein 3
mm9_v1_chr9_-_123771243_123771245	0.206087	AIRE.p2	AK089908|Xcr1|23832|chemokine (C motif) receptor 1	AK040878|Xcr1|23832|chemokine (C motif) receptor 1	NM_011798|Xcr1|23832|chemokine (C motif) receptor 1
mm9_v1_chr17_-_43803963_43804162	0.205922	AIRE.p2	AK014394|Slc25a27|74011|solute carrier family 25, member 27	NM_028711|Slc25a27|74011|solute carrier family 25, member 27	BC138993|Slc25a27|74011|solute carrier family 25, member 27	BC138994|Slc25a27|74011|solute carrier family 25, member 27	AB106930|Slc25a27|74011|solute carrier family 25, member 27	AK021314|Slc25a27|74011|solute carrier family 25, member 27	AK043831|Slc25a27|74011|solute carrier family 25, member 27
mm9_v1_chr17_+_33226311_33226311	0.204084	AIRE.p2	NM_001024950|Zfp563|240068|zinc finger protein 563
mm9_v1_chr9_-_15084310_15084404	0.20401	AIRE.p2	BC020185|Med17|234959|mediator complex subunit 17	NM_144933|Med17|234959|mediator complex subunit 17	AK033151|Med17|234959|mediator complex subunit 17	AK142033|Med17|234959|mediator complex subunit 17	AK038451|Med17|234959|mediator complex subunit 17	AK049112|Med17|234959|mediator complex subunit 17	AK151377|Med17|234959|mediator complex subunit 17
mm9_v1_chr7_+_54007201_54007213	0.203932	AIRE.p2	M11130|Saa2|20209|serum amyloid A 2	NM_011314|Saa2|20209|serum amyloid A 2	L22190|Saa2|20209|serum amyloid A 2
mm9_v1_chr14_+_80400057_80400108	0.203125	AIRE.p2	BC141127|Olfm4|380924|olfactomedin 4	BC145436|Olfm4|380924|olfactomedin 4	AK133536|Olfm4|380924|olfactomedin 4	NM_001030294|Olfm4|380924|olfactomedin 4
mm9_v1_chr3_+_96329090_96329142	0.201851	AIRE.p2	AJ557515|Hfe2|69585|hemochromatosis type 2 (juvenile) (human homolog)	BC022603|Hfe2|69585|hemochromatosis type 2 (juvenile) (human homolog)	NM_027126|Hfe2|69585|hemochromatosis type 2 (juvenile) (human homolog)	AK014082|Hfe2|69585|hemochromatosis type 2 (juvenile) (human homolog)
mm9_v1_chr11_-_61680770_61680775	0.201824	AIRE.p2	AK138613|A530017D24Rik|103880|RIKEN cDNA A530017D24 gene
mm9_v1_chr11_-_107050573_107050694	0.20165	AIRE.p2	BC024874|Nol11|68979|nucleolar protein 11	AK005123|Nol11|68979|nucleolar protein 11	AK038696|Nol11|68979|nucleolar protein 11	AK078524|Nol11|68979|nucleolar protein 11	AK157743|Nol11|68979|nucleolar protein 11	AK076704|Nol11|68979|nucleolar protein 11	NM_001161329|Nol11|68979|nucleolar protein 11	NM_133702|Nol11|68979|nucleolar protein 11
mm9_v1_chr6_-_142421466_142421628	0.201587	AIRE.p2	BC021322|Gys2|232493|glycogen synthase 2	BC158081|Gys2|232493|glycogen synthase 2	NM_145572|Gys2|232493|glycogen synthase 2
mm9_v1_chr2_+_119456102_119456195	0.201189	AIRE.p2	BC009096|Nusap1|108907|nucleolar and spindle associated protein 1
mm9_v1_chr5_-_37087204_37087208	0.201037	AIRE.p2	AK033480|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed	NM_001081232|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed
mm9_v1_chr14_+_21655879_21655945	0.199831	AIRE.p2	NM_008873|Plau|18792|plasminogen activator, urokinase	AK054349|Plau|18792|plasminogen activator, urokinase	X02389|Plau|18792|plasminogen activator, urokinase	BC120709|Plau|18792|plasminogen activator, urokinase	BC120713|Plau|18792|plasminogen activator, urokinase	BC145037|Plau|18792|plasminogen activator, urokinase
mm9_v1_chr14_-_56751384_56751444	0.198586	AIRE.p2	BC141122|Gzmd|14941|granzyme D	BC145433|Gzmd|14941|granzyme D	BC145434|Gzmd|14941|granzyme D	AK131671|Gzmd|14941|granzyme D	NM_010372|Gzmd|14941|granzyme D	J03255|Gzmd|14941|granzyme D
mm9_v1_chr6_-_142421335_142421382	0.198172	AIRE.p2	AK138992|Gys2|232493|glycogen synthase 2	AK149391|Gys2|232493|glycogen synthase 2
mm9_v1_chr1_-_121733647_121733647	0.198005	AIRE.p2	NM_019933|Ptpn4|19258|protein tyrosine phosphatase, non-receptor type 4
mm9_v1_chr19_+_41624128_41624128	0.195124	AIRE.p2	AK041090|Lcor|212391|ligand dependent nuclear receptor corepressor	NM_172154|Lcor|212391|ligand dependent nuclear receptor corepressor
mm9_v1_chr11_-_120509650_120509650	0.194924	AIRE.p2	NM_026751|Myadml2|68515|myeloid-associated differentiation marker-like 2
mm9_v1_chr11_-_94644016_94644016	0.193414	AIRE.p2	AK139848|Tmem92-ps|544806|transmembrane protein 92, pseudogene	NM_001034896|Tmem92-ps|544806|transmembrane protein 92, pseudogene
mm9_v1_chrX_+_53389748_53389754	0.192924	AIRE.p2	AK014416|3830403N18Rik|70691|RIKEN cDNA 3830403N18 gene	NM_027510|3830403N18Rik|70691|RIKEN cDNA 3830403N18 gene	AK014417|3830403N18Rik|70691|RIKEN cDNA 3830403N18 gene
mm9_v1_chr15_+_101042440_101042460	0.192862	AIRE.p2	AK078525|Acvr1b|11479|activin A receptor, type 1B
mm9_v1_chr2_-_87332571_87332574	0.192138	AIRE.p2	BC052825|Pramel7|347712|preferentially expressed antigen in melanoma like 7	AF490343|Pramel7|347712|preferentially expressed antigen in melanoma like 7	NM_178250|Pramel7|347712|preferentially expressed antigen in melanoma like 7
mm9_v1_chr16_+_20629900_20629923	0.191613	AIRE.p2	AK031951|Ece2|107522|endothelin converting enzyme 2	AF489571|Ece2|107522|endothelin converting enzyme 2	AF489572|Ece2|107522|endothelin converting enzyme 2	NM_139293|Ece2|107522|endothelin converting enzyme 2	NM_177942|Ece2|107522|endothelin converting enzyme 2
mm9_v1_chr4_-_117438214_117438270	0.190766	AIRE.p2	BC064748|Klf17|75753|Kruppel-like factor 17	AF508984|Klf17|75753|Kruppel-like factor 17	AK018361|Klf17|75753|Kruppel-like factor 17	AK139827|Klf17|75753|Kruppel-like factor 17	NM_029416|Klf17|75753|Kruppel-like factor 17
mm9_v1_chr4_+_147359897_147360008	0.190543	AIRE.p2	NM_008726|Nppb|18158|natriuretic peptide type B	AK003128|Nppb|18158|natriuretic peptide type B	BC061165|Nppb|18158|natriuretic peptide type B
mm9_v1_chrX_-_121249518_121249518	0.190225	AIRE.p2	NM_001100616|Vmn2r121|100038941|vomeronasal 2, receptor 121
mm9_v1_chr15_-_3945704_3945774	0.189568	AIRE.p2	AK045350|AW549877|106064|expressed sequence AW549877	AK154940|AW549877|106064|expressed sequence AW549877	NM_145930|AW549877|106064|expressed sequence AW549877
mm9_v1_chr9_+_113885162_113885169	0.188677	AIRE.p2	AK087783|Ubp1|22221|upstream binding protein 1
mm9_v1_chr11_+_54683756_54683778	0.188204	AIRE.p2	
mm9_v1_chr12_-_70329149_70329198	0.187056	AIRE.p2	AF036898|Pole2|18974|polymerase (DNA directed), epsilon 2 (p59 subunit)	AK011194|Pole2|18974|polymerase (DNA directed), epsilon 2 (p59 subunit)	BC052170|Pole2|18974|polymerase (DNA directed), epsilon 2 (p59 subunit)	BC063772|Pole2|18974|polymerase (DNA directed), epsilon 2 (p59 subunit)	AK172024|Pole2|18974|polymerase (DNA directed), epsilon 2 (p59 subunit)	AK077592|Pole2|18974|polymerase (DNA directed), epsilon 2 (p59 subunit)	NM_011133|Pole2|18974|polymerase (DNA directed), epsilon 2 (p59 subunit)
mm9_v1_chr2_-_125971986_125971986	0.183803	AIRE.p2	NM_029455|4930525F21Rik|75823|RIKEN cDNA 4930525F21 gene
mm9_v1_chr16_-_57606866_57606989	0.182669	AIRE.p2	BC038891|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	BC038682|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK019808|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK080386|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK003195|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK019979|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK012168|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK136657|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	NM_025599|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene
mm9_v1_chr19_+_8915018_8915039	0.180571	AIRE.p2	AK004634|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK151606|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK155753|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK170183|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm9_v1_chr13_-_21560348_21560369	0.180559	AIRE.p2	AK015912|Nkapl|66707|NFKB activating protein-like	AK014812|Nkapl|66707|NFKB activating protein-like	BC048457|Nkapl|66707|NFKB activating protein-like	BC089537|Nkapl|66707|NFKB activating protein-like	BC061080|Nkapl|66707|NFKB activating protein-like	BC099550|Nkapl|66707|NFKB activating protein-like	NM_025719|Nkapl|66707|NFKB activating protein-like
mm9_v1_chr12_-_106103285_106103341	0.18023	AIRE.p2	AB047978|Clmn|94040|calmin	AB059643|Clmn|94040|calmin	AB059644|Clmn|94040|calmin	AB059645|Clmn|94040|calmin	AB059646|Clmn|94040|calmin	AB059647|Clmn|94040|calmin	AB059648|Clmn|94040|calmin	NM_001040682|Clmn|94040|calmin	NM_053155|Clmn|94040|calmin
mm9_v1_chr11_+_101037415_101037470	0.179603	AIRE.p2	AF039833|Cntnap1|53321|contactin associated protein-like 1	NM_016782|Cntnap1|53321|contactin associated protein-like 1
mm9_v1_chr7_-_147268395_147268472	0.179017	AIRE.p2	AK002979|Caly|68566|calcyon neuron-specific vesicular protein	AK163466|Caly|68566|calcyon neuron-specific vesicular protein	AK003400|Caly|68566|calcyon neuron-specific vesicular protein	NM_001190385|Caly|68566|calcyon neuron-specific vesicular protein	NM_026769|Caly|68566|calcyon neuron-specific vesicular protein
mm9_v1_chr5_-_121459496_121459582	0.178284	AIRE.p2	BC042585|Rph3a|19894|rabphilin 3A	NM_011286|Rph3a|19894|rabphilin 3A
mm9_v1_chr14_-_41706253_41706351	0.178131	AIRE.p2	AX776199|Sh2d4b|328381|SH2 domain containing 4B	NM_177816|Sh2d4b|328381|SH2 domain containing 4B	BC138964|Sh2d4b|328381|SH2 domain containing 4B
mm9_v1_chr12_+_84861415_84861438	0.178119	AIRE.p2	NM_030246|Dcaf4|73828|DDB1 and CUL4 associated factor 4
mm9_v1_chrX_+_45610055_45610110	0.175599	AIRE.p2	AK134348|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	BC062165|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AK165575|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AK165628|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AK012492|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	BC082590|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AK134784|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AY316163|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AK172924|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	NM_028276|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)
mm9_v1_chr5_-_138628389_138628461	0.175462	AIRE.p2	AK207383|Taf6|21343|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC058583|Taf6|21343|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_009315|Taf6|21343|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK154867|Taf6|21343|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr7_-_110940343_110940343	0.175367	AIRE.p2	NM_013619|Olfr67|18368|olfactory receptor 67
mm9_v1_chr8_-_114457667_114457780	0.173007	AIRE.p2	BC100402|Tmem231|234740|transmembrane protein 231	AK155425|Tmem231|234740|transmembrane protein 231	NM_001033321|Tmem231|234740|transmembrane protein 231	AK030046|Tmem231|234740|transmembrane protein 231	BC132428|Tmem231|234740|transmembrane protein 231	BC132430|Tmem231|234740|transmembrane protein 231
mm9_v1_chr5_-_145652207_145652313	0.171561	AIRE.p2	AK034736|Smurf1|75788|SMAD specific E3 ubiquitin protein ligase 1
mm9_v1_chr11_-_102994176_102994239	0.170408	AIRE.p2	
mm9_v1_chr10_-_92544356_92544371	0.170226	AIRE.p2	BC115566|4930485B16Rik|380654|RIKEN cDNA 4930485B16 gene	AK053219|4930485B16Rik|380654|RIKEN cDNA 4930485B16 gene	BC115567|4930485B16Rik|380654|RIKEN cDNA 4930485B16 gene
mm9_v1_chr1_-_33726582_33726638	0.16987	AIRE.p2	D17385|Prim2|19076|DNA primase, p58 subunit	AK153970|Prim2|19076|DNA primase, p58 subunit	BC019500|Prim2|19076|DNA primase, p58 subunit	D13545|Prim2|19076|DNA primase, p58 subunit	NM_008922|Prim2|19076|DNA primase, p58 subunit	AK076095|Prim2|19076|DNA primase, p58 subunit	AK077760|Prim2|19076|DNA primase, p58 subunit	AK168246|Prim2|19076|DNA primase, p58 subunit
mm9_v1_chr2_-_174967487_174967557	0.168551	AIRE.p2	AK166773|Gm14399|100043761|predicted gene 14399
mm9_v1_chr2_-_101679136_101679136	0.168122	AIRE.p2	NM_001110849|Prr5l|72446|proline rich 5 like
mm9_v1_chr7_-_99785544_99785651	0.167346	AIRE.p2	AK048925|Ankrd42|73845|ankyrin repeat domain 42	AK029888|Ankrd42|73845|ankyrin repeat domain 42	AK133339|Ankrd42|73845|ankyrin repeat domain 42	AK033599|Ankrd42|73845|ankyrin repeat domain 42	BC100433|Ankrd42|73845|ankyrin repeat domain 42	AK029511|Ankrd42|73845|ankyrin repeat domain 42	NM_028665|Ankrd42|73845|ankyrin repeat domain 42
mm9_v1_chr9_+_54434140_54434327	0.16724	AIRE.p2	AK158646|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK159051|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK117103|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK152353|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK159666|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK160054|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK150618|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK164038|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168149|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK167822|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK151304|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK153459|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168049|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK010065|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK032787|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK047951|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168034|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK084523|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	BC049956|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	NM_029573|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK169152|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	BC034273|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha
mm9_v1_chr7_+_30569807_30569808	0.166443	AIRE.p2	BC049120|Zfp30|22693|zinc finger protein 30	AY605122|Zfp30|22693|zinc finger protein 30	NM_013705|Zfp30|22693|zinc finger protein 30	Z30174|Zfp30|22693|zinc finger protein 30
mm9_v1_chr17_-_24844481_24844605	0.165298	AIRE.p2	AK193903|Tbl3|213773|transducin (beta)-like 3	AK210914|Tbl3|213773|transducin (beta)-like 3	AK210933|Tbl3|213773|transducin (beta)-like 3	BC019504|Tbl3|213773|transducin (beta)-like 3	AK137554|Tbl3|213773|transducin (beta)-like 3	AK028806|Tbl3|213773|transducin (beta)-like 3	AK163228|Tbl3|213773|transducin (beta)-like 3	AK165125|Tbl3|213773|transducin (beta)-like 3	AK167127|Tbl3|213773|transducin (beta)-like 3	AK081572|Tbl3|213773|transducin (beta)-like 3	AK149940|Tbl3|213773|transducin (beta)-like 3	AK083399|Tbl3|213773|transducin (beta)-like 3	AK081966|Tbl3|213773|transducin (beta)-like 3	NM_145396|Tbl3|213773|transducin (beta)-like 3
mm9_v1_chr2_-_164063436_164063437	0.164818	AIRE.p2	AK020661|Svs2|53878|seminal vesicle secretory protein 2
mm9_v1_chr3_-_59014800_59014805	0.164443	AIRE.p2	BC119043|P2ry13|74191|purinergic receptor P2Y, G-protein coupled 13	AK008013|P2ry13|74191|purinergic receptor P2Y, G-protein coupled 13	AK038560|P2ry13|74191|purinergic receptor P2Y, G-protein coupled 13	AK083264|P2ry13|74191|purinergic receptor P2Y, G-protein coupled 13	NM_028808|P2ry13|74191|purinergic receptor P2Y, G-protein coupled 13
mm9_v1_chr3_-_30498769_30498835	0.164321	AIRE.p2	AK007208|Arpm1|76652|actin related protein M1	AK047260|Arpm1|76652|actin related protein M1	NM_029690|Arpm1|76652|actin related protein M1	BC107277|Arpm1|76652|actin related protein M1	BC107278|Arpm1|76652|actin related protein M1
mm9_v1_chr2_+_70400179_70400352	0.163618	AIRE.p2	AK054554|Gad1|14415|glutamic acid decarboxylase 1	NM_008077|Gad1|14415|glutamic acid decarboxylase 1	AK148497|Gad1|14415|glutamic acid decarboxylase 1	AK160868|Gad1|14415|glutamic acid decarboxylase 1	AK136801|Gad1|14415|glutamic acid decarboxylase 1	BC027059|Gad1|14415|glutamic acid decarboxylase 1	AF326547|Gad1|14415|glutamic acid decarboxylase 1	AF326548|Gad1|14415|glutamic acid decarboxylase 1	Z49976|Gad1|14415|glutamic acid decarboxylase 1
mm9_v1_chr16_-_98169926_98169967	0.163159	AIRE.p2	AK017406|Zfp295|114565|zinc finger protein 295	AK084920|Zfp295|114565|zinc finger protein 295
mm9_v1_chr8_-_113555584_113555650	0.162434	AIRE.p2	AK033235|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	NM_001190786|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
mm9_v1_chr11_+_87607531_87607556	0.162272	AIRE.p2	AY500847|Mpo|17523|myeloperoxidase
mm9_v1_chr5_+_38651466_38651637	0.162227	AIRE.p2	BC025197|Tmem128|66309|transmembrane protein 128	AK012789|Tmem128|66309|transmembrane protein 128	AK013227|Tmem128|66309|transmembrane protein 128	AK080853|Tmem128|66309|transmembrane protein 128	NM_025480|Tmem128|66309|transmembrane protein 128	AK162257|Tmem128|66309|transmembrane protein 128	AK076679|Tmem128|66309|transmembrane protein 128	BC060969|Tmem128|66309|transmembrane protein 128	BC110310|Tmem128|66309|transmembrane protein 128
mm9_v1_chr15_-_76554119_76554177	0.161311	AIRE.p2	AK186599|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene
mm9_v1_chr14_-_60845511_60845640	0.160624	AIRE.p2	AK145818|BC010981|407830|cDNA sequence BC010981
mm9_v1_chr4_+_145260599_145260599	0.160414	AIRE.p2	BC096593|Gm13242|100041379|predicted gene 13242	NM_001103158|Gm13242|100041379|predicted gene 13242
mm9_v1_chr6_+_89046108_89046173	0.159045	AIRE.p2	BC098480|4933427D06Rik|232217|RIKEN cDNA 4933427D06 gene	NM_175017|4933427D06Rik|232217|RIKEN cDNA 4933427D06 gene	AK030235|4933427D06Rik|232217|RIKEN cDNA 4933427D06 gene
mm9_v1_chr2_-_77357674_77357722	0.15901	AIRE.p2	AK078551|Zfp385b|241494|zinc finger protein 385B	AK050293|Zfp385b|241494|zinc finger protein 385B	NM_001113400|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr7_+_95426585_95426756	0.157655	AIRE.p2	AK146858|Ctsc|13032|cathepsin C	NM_009982|Ctsc|13032|cathepsin C	AK150761|Ctsc|13032|cathepsin C	AK151711|Ctsc|13032|cathepsin C	AK153168|Ctsc|13032|cathepsin C	AK002454|Ctsc|13032|cathepsin C	AK049406|Ctsc|13032|cathepsin C	AK167882|Ctsc|13032|cathepsin C	U89269|Ctsc|13032|cathepsin C	U74683|Ctsc|13032|cathepsin C	AK151388|Ctsc|13032|cathepsin C	AK152524|Ctsc|13032|cathepsin C	BC067063|Ctsc|13032|cathepsin C	AK151861|Ctsc|13032|cathepsin C
mm9_v1_chr14_+_66456138_66456255	0.157502	AIRE.p2	AK078345|Ccdc25|67179|coiled-coil domain containing 25	NM_145944|Ccdc25|67179|coiled-coil domain containing 25	AK012172|Ccdc25|67179|coiled-coil domain containing 25	AK139180|Ccdc25|67179|coiled-coil domain containing 25	BC025545|Ccdc25|67179|coiled-coil domain containing 25	AK089982|Ccdc25|67179|coiled-coil domain containing 25	AK016286|Ccdc25|67179|coiled-coil domain containing 25	BC148235|Ccdc25|67179|coiled-coil domain containing 25	BC128015|Ccdc25|67179|coiled-coil domain containing 25
mm9_v1_chr4_-_118954780_118955048	0.157132	AIRE.p2	AK213887|Ybx1|22608|Y box protein 1	AK208509|Ybx1|22608|Y box protein 1	AK212502|Ybx1|22608|Y box protein 1
mm9_v1_chr14_+_73952438_73952612	0.156475	AIRE.p2	AK016060|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK081965|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK088801|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK150594|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK152783|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK160130|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	NM_011506|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK153198|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	BC056353|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	BC057605|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK132762|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK160652|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK005273|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit
mm9_v1_chr2_+_9804107_9804137	0.156359	AIRE.p2	AK144308|4930412O13Rik|381347|RIKEN cDNA 4930412O13 gene
mm9_v1_chr12_+_74224693_74224793	0.155225	AIRE.p2	AK048499|Mnat1|17420|menage a trois 1	AK155859|Mnat1|17420|menage a trois 1	NM_008612|Mnat1|17420|menage a trois 1	AK008249|Mnat1|17420|menage a trois 1	BC089023|Mnat1|17420|menage a trois 1	BC115630|Mnat1|17420|menage a trois 1	BC115631|Mnat1|17420|menage a trois 1	AK157721|Mnat1|17420|menage a trois 1	AK008134|Mnat1|17420|menage a trois 1	AK053621|Mnat1|17420|menage a trois 1	AK011833|Mnat1|17420|menage a trois 1	AK029174|Mnat1|17420|menage a trois 1
mm9_v1_chr4_+_126803283_126803296	0.153393	AIRE.p2	AK160613|Gm12942|100039968|predicted gene 12942	NM_001099319|Gm12942|100039968|predicted gene 12942
mm9_v1_chr11_-_69495203_69495445	0.152221	AIRE.p2	AY008764|Senp3|80886|SUMO/sentrin specific peptidase 3	BC037014|Senp3|80886|SUMO/sentrin specific peptidase 3	AK045071|Senp3|80886|SUMO/sentrin specific peptidase 3
mm9_v1_chrX_+_166317553_166317595	0.151746	AIRE.p2	AK135734|Mid1|17318|midline 1	AY112904|Mid1|17318|midline 1	NM_183151|Mid1|17318|midline 1	BC053704|Mid1|17318|midline 1
mm9_v1_chr3_-_127540408_127540409	0.149537	AIRE.p2	NM_145964|Ap1ar|211556|adaptor-related protein complex 1 associated regulatory protein
mm9_v1_chr11_+_102994627_102994711	0.149175	AIRE.p2	AK016624|Hexim2|71059|hexamthylene bis-acetamide inducible 2	AK160110|Hexim2|71059|hexamthylene bis-acetamide inducible 2	NM_001130516|Hexim2|71059|hexamthylene bis-acetamide inducible 2	NM_001130515|Hexim2|71059|hexamthylene bis-acetamide inducible 2	NM_027658|Hexim2|71059|hexamthylene bis-acetamide inducible 2	BC026458|Hexim2|71059|hexamthylene bis-acetamide inducible 2	BC115597|Hexim2|71059|hexamthylene bis-acetamide inducible 2	BC115598|Hexim2|71059|hexamthylene bis-acetamide inducible 2
mm9_v1_chr5_-_118605391_118605453	0.149029	AIRE.p2	AK034447|Fbxw8|231672|F-box and WD-40 domain protein 8	AK047756|Fbxw8|231672|F-box and WD-40 domain protein 8	BC009095|Fbxw8|231672|F-box and WD-40 domain protein 8	AK047695|Fbxw8|231672|F-box and WD-40 domain protein 8
mm9_v1_chr7_-_49314350_49314350	0.148399	AIRE.p2	NM_001105056|Vmn2r59|628444|vomeronasal 2, receptor 59
mm9_v1_chr5_-_123183255_123183351	0.147441	AIRE.p2	AK050846|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chr2_-_113688771_113688881	0.145553	AIRE.p2	BC050875|Arhgap11a|228482|Rho GTPase activating protein 11A	AK129034|Arhgap11a|228482|Rho GTPase activating protein 11A	BC058105|Arhgap11a|228482|Rho GTPase activating protein 11A	NM_181416|Arhgap11a|228482|Rho GTPase activating protein 11A	AK162074|Arhgap11a|228482|Rho GTPase activating protein 11A
mm9_v1_chr7_+_118172447_118172534	0.145466	AIRE.p2	NM_009431|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK040331|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC024749|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK083921|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK045101|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK040205|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC080719|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC060091|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK148536|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC010344|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC053910|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	L49502|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr1_-_174825160_174825190	0.145325	AIRE.p2	M23552|Apcs|20219|serum amyloid P-component	X14079|Apcs|20219|serum amyloid P-component	Y00426|Apcs|20219|serum amyloid P-component	NM_011318|Apcs|20219|serum amyloid P-component
mm9_v1_chr4_-_131628011_131628011	0.145011	AIRE.p2	L00919|Epb4.1|269587|erythrocyte protein band 4.1	NM_183428|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr15_-_66332402_66332471	0.140747	AIRE.p2	AF092208|Lrrc6|54562|leucine rich repeat containing 6 (testis)	BC046277|Lrrc6|54562|leucine rich repeat containing 6 (testis)	AK077124|Lrrc6|54562|leucine rich repeat containing 6 (testis)	AK016236|Lrrc6|54562|leucine rich repeat containing 6 (testis)	NM_019457|Lrrc6|54562|leucine rich repeat containing 6 (testis)
mm9_v1_chr5_+_92984113_92984113	0.137327	AIRE.p2	NM_001170572|Fam47e|384198|family with sequence similarity 47, member E
mm9_v1_chr2_-_128513089_128513155	0.136726	AIRE.p2	BC057201|Anapc1|17222|anaphase promoting complex subunit 1	AK149762|Anapc1|17222|anaphase promoting complex subunit 1	AK052404|Anapc1|17222|anaphase promoting complex subunit 1	AK053383|Anapc1|17222|anaphase promoting complex subunit 1	AK090134|Anapc1|17222|anaphase promoting complex subunit 1	AK054305|Anapc1|17222|anaphase promoting complex subunit 1	BC139002|Anapc1|17222|anaphase promoting complex subunit 1	BC145492|Anapc1|17222|anaphase promoting complex subunit 1	AK164804|Anapc1|17222|anaphase promoting complex subunit 1	X80169|Anapc1|17222|anaphase promoting complex subunit 1	AK077847|Anapc1|17222|anaphase promoting complex subunit 1	NM_008569|Anapc1|17222|anaphase promoting complex subunit 1
mm9_v1_chr17_+_48371921_48371947	0.135693	AIRE.p2	NM_021406|Trem1|58217|triggering receptor expressed on myeloid cells 1	AK171753|Trem1|58217|triggering receptor expressed on myeloid cells 1	AK089439|Trem1|58217|triggering receptor expressed on myeloid cells 1	BC111875|Trem1|58217|triggering receptor expressed on myeloid cells 1	AF241219|Trem1|58217|triggering receptor expressed on myeloid cells 1
mm9_v1_chr2_+_177493957_177493997	0.135356	AIRE.p2	BC092145|Gm14322|626802|predicted gene 14322
mm9_v1_chr10_+_90038471_90038471	0.13448	AIRE.p2	BC098373|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177397|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr7_-_3567703_3567758	0.134433	AIRE.p2	BC137776|Oscar|232790|osteoclast associated receptor	AF391159|Oscar|232790|osteoclast associated receptor	AF391161|Oscar|232790|osteoclast associated receptor	NM_175632|Oscar|232790|osteoclast associated receptor	AF391160|Oscar|232790|osteoclast associated receptor
mm9_v1_chr1_-_174825067_174825072	0.134327	AIRE.p2	AK144248|Apcs|20219|serum amyloid P-component	AK165699|Apcs|20219|serum amyloid P-component
mm9_v1_chr9_-_7176964_7177059	0.134284	AIRE.p2	BC088991|Dync2h1|110350|dynein cytoplasmic 2 heavy chain 1	AK045978|Dync2h1|110350|dynein cytoplasmic 2 heavy chain 1	AK084796|Dync2h1|110350|dynein cytoplasmic 2 heavy chain 1	AK032860|Dync2h1|110350|dynein cytoplasmic 2 heavy chain 1	AK046538|Dync2h1|110350|dynein cytoplasmic 2 heavy chain 1	DQ104402|Dync2h1|110350|dynein cytoplasmic 2 heavy chain 1	NM_029851|Dync2h1|110350|dynein cytoplasmic 2 heavy chain 1
mm9_v1_chr1_-_94348610_94348663	0.133535	AIRE.p2	AK203226|Ndufa10|67273|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10
mm9_v1_chr9_+_82723591_82723695	0.133246	AIRE.p2	AK076594|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	AK013036|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	AK045436|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	BC046301|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	BC061099|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	AF093135|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	AK014712|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	AK020448|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1
mm9_v1_chr7_-_54444724_54444785	0.132542	AIRE.p2	NM_205821|Mrgpra6|381886|MAS-related GPR, member A6	BC132198|Mrgpra6|381886|MAS-related GPR, member A6	BC132204|Mrgpra6|381886|MAS-related GPR, member A6
mm9_v1_chr13_-_56649769_56649811	0.131842	AIRE.p2	AB009688|Lect2|16841|leukocyte cell-derived chemotaxin 2	AF035161|Lect2|16841|leukocyte cell-derived chemotaxin 2	AK131971|Lect2|16841|leukocyte cell-derived chemotaxin 2
mm9_v1_chr17_-_56256950_56256977	0.13097	AIRE.p2	BC024138|Plin5|66968|perilipin 5	DQ473305|Plin5|66968|perilipin 5	AK075872|Plin5|66968|perilipin 5	AK010202|Plin5|66968|perilipin 5	NM_025874|Plin5|66968|perilipin 5
mm9_v1_chr7_-_133521447_133521447	0.130236	AIRE.p2	NM_023712|Spns1|73658|spinster homolog 1 (Drosophila)
mm9_v1_chr1_-_182126032_182126150	0.130086	AIRE.p2	AK004791|Adck3|67426|aarF domain containing kinase 3	AK014605|Adck3|67426|aarF domain containing kinase 3	BC030937|Adck3|67426|aarF domain containing kinase 3	NM_023341|Adck3|67426|aarF domain containing kinase 3
mm9_v1_chr2_-_172284055_172284095	0.129405	AIRE.p2	BC139073|Gcnt7|654821|glucosaminyl (N-acetyl) transferase family member 7	BC139076|Gcnt7|654821|glucosaminyl (N-acetyl) transferase family member 7	AK039414|Gcnt7|654821|glucosaminyl (N-acetyl) transferase family member 7	NM_001039560|Gcnt7|654821|glucosaminyl (N-acetyl) transferase family member 7
mm9_v1_chr8_+_74967757_74967859	0.1292	AIRE.p2	AK133815|1700030K09Rik|72254|RIKEN cDNA 1700030K09 gene	NM_028170|1700030K09Rik|72254|RIKEN cDNA 1700030K09 gene	BC008558|1700030K09Rik|72254|RIKEN cDNA 1700030K09 gene	AK089918|1700030K09Rik|72254|RIKEN cDNA 1700030K09 gene
mm9_v1_chr16_+_20629926_20630044	0.128519	AIRE.p2	AF396699|Ece2|107522|endothelin converting enzyme 2	BC138052|Ece2|107522|endothelin converting enzyme 2	BC138053|Ece2|107522|endothelin converting enzyme 2	BC145126|Ece2|107522|endothelin converting enzyme 2	AK043473|Ece2|107522|endothelin converting enzyme 2
mm9_v1_chr1_-_82765022_82765035	0.127892	AIRE.p2	BC117736|Tm4sf20|66261|transmembrane 4 L six family member 20	AK007532|Tm4sf20|66261|transmembrane 4 L six family member 20	AK017154|Tm4sf20|66261|transmembrane 4 L six family member 20	AK017195|Tm4sf20|66261|transmembrane 4 L six family member 20	NM_025453|Tm4sf20|66261|transmembrane 4 L six family member 20	AK017209|Tm4sf20|66261|transmembrane 4 L six family member 20
mm9_v1_chr12_-_73509668_73509745	0.127653	AIRE.p2	BC053926|Rtn1|104001|reticulon 1	BC058579|Rtn1|104001|reticulon 1
mm9_v1_chr9_-_58589362_58589365	0.127508	AIRE.p2	AK010725|2410076I21Rik|73673|RIKEN cDNA 2410076I21 gene	BC038688|2410076I21Rik|73673|RIKEN cDNA 2410076I21 gene	NM_028598|2410076I21Rik|73673|RIKEN cDNA 2410076I21 gene
mm9_v1_chr17_-_33855557_33855658	0.126485	AIRE.p2	BC002144|March2|224703|membrane-associated ring finger (C3HC4) 2	AK053434|March2|224703|membrane-associated ring finger (C3HC4) 2	AK079234|March2|224703|membrane-associated ring finger (C3HC4) 2	AK081495|March2|224703|membrane-associated ring finger (C3HC4) 2	AK036614|March2|224703|membrane-associated ring finger (C3HC4) 2	AK039778|March2|224703|membrane-associated ring finger (C3HC4) 2	AK040163|March2|224703|membrane-associated ring finger (C3HC4) 2	NM_145486|March2|224703|membrane-associated ring finger (C3HC4) 2
mm9_v1_chr11_+_6375032_6375069	0.126209	AIRE.p2	
mm9_v1_chr19_+_38339167_38339370	0.123347	AIRE.p2	AK045443|Lgi1|56839|leucine-rich repeat LGI family, member 1	BC066090|Lgi1|56839|leucine-rich repeat LGI family, member 1	NM_020278|Lgi1|56839|leucine-rich repeat LGI family, member 1	AF246818|Lgi1|56839|leucine-rich repeat LGI family, member 1	AK035873|Lgi1|56839|leucine-rich repeat LGI family, member 1	AK031996|Lgi1|56839|leucine-rich repeat LGI family, member 1
mm9_v1_chr15_+_76531891_76531971	0.123316	AIRE.p2	AK009269|Mfsd3|69572|major facilitator superfamily domain containing 3	BC085305|Mfsd3|69572|major facilitator superfamily domain containing 3	AK089539|Mfsd3|69572|major facilitator superfamily domain containing 3	NM_027122|Mfsd3|69572|major facilitator superfamily domain containing 3
mm9_v1_chr9_+_4383536_4383536	0.122444	AIRE.p2	AK180204|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene	BC014729|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene	NM_145609|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene
mm9_v1_chr2_-_4573118_4573191	0.122436	AIRE.p2	AK139720|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC058631|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC004573|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC028306|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	NM_026045|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK135890|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK035073|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK135707|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)
mm9_v1_chr14_+_96280472_96280516	0.121897	AIRE.p2	BC049573|4921530L21Rik|66732|RIKEN cDNA 4921530L21 gene	AK014987|4921530L21Rik|66732|RIKEN cDNA 4921530L21 gene	NM_025733|4921530L21Rik|66732|RIKEN cDNA 4921530L21 gene	AK005846|4921530L21Rik|66732|RIKEN cDNA 4921530L21 gene
mm9_v1_chr1_+_145487825_145487990	0.121295	AIRE.p2	AK036141|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	NM_020025|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK034371|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK083168|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK080106|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	BC046322|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
mm9_v1_chr12_+_105625371_105625401	0.120135	AIRE.p2	NM_009253|Serpina3m|20717|serine (or cysteine) peptidase inhibitor, clade A, member 3M	BC053337|Serpina3m|20717|serine (or cysteine) peptidase inhibitor, clade A, member 3M	X55148|Serpina3m|20717|serine (or cysteine) peptidase inhibitor, clade A, member 3M
mm9_v1_chr10_+_58834161_58834363	0.119683	AIRE.p2	AK178926|P4ha1|18451|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	AK212609|P4ha1|18451|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
mm9_v1_chr19_+_32694494_32694583	0.119238	AIRE.p2	AK128962|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	BC090997|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	NM_011864|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	AF052453|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	AF085144|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2
mm9_v1_chr18_-_78006491_78006518	0.118927	AIRE.p2	AK076912|Haus1|225745|HAUS augmin-like complex, subunit 1	AK146923|Haus1|225745|HAUS augmin-like complex, subunit 1	BC024400|Haus1|225745|HAUS augmin-like complex, subunit 1	NM_146089|Haus1|225745|HAUS augmin-like complex, subunit 1
mm9_v1_chr5_+_30969259_30969346	0.116648	AIRE.p2	AF012709|Cenpa|12615|centromere protein A	NM_007681|Cenpa|12615|centromere protein A	AK040313|Cenpa|12615|centromere protein A	AK041138|Cenpa|12615|centromere protein A	AK089033|Cenpa|12615|centromere protein A	AK053763|Cenpa|12615|centromere protein A	AK010718|Cenpa|12615|centromere protein A	BC011038|Cenpa|12615|centromere protein A	AK011399|Cenpa|12615|centromere protein A	BC012280|Cenpa|12615|centromere protein A
mm9_v1_chr2_-_94252368_94252477	0.115947	AIRE.p2	AK212083|Api5|11800|apoptosis inhibitor 5
mm9_v1_chr1_+_44204769_44204771	0.115855	AIRE.p2	AK164205|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5
mm9_v1_chr13_+_73674194_73674271	0.1158	AIRE.p2	BC054119|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	NM_010020|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	AK032629|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	AK136885|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	U16265|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	AF109072|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3
mm9_v1_chr17_+_73186891_73186925	0.114988	AIRE.p2	AK154461|Ypel5|383295|yippee-like 5 (Drosophila)
mm9_v1_chr9_+_3532302_3532353	0.113435	AIRE.p2	NM_001033322|Gucy1a2|234889|guanylate cyclase 1, soluble, alpha 2
mm9_v1_chr1_-_174825081_174825085	0.112612	AIRE.p2	BC061125|Apcs|20219|serum amyloid P-component
mm9_v1_chr5_+_89012600_89012641	0.112609	AIRE.p2	AK045610|Rufy3|52822|RUN and FYVE domain containing 3	AK083242|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr15_+_76709688_76709760	0.111916	AIRE.p2	BC011501|Zfp7|223669|zinc finger protein 7	NM_145916|Zfp7|223669|zinc finger protein 7	AK144887|Zfp7|223669|zinc finger protein 7	AK038299|Zfp7|223669|zinc finger protein 7	AK143414|Zfp7|223669|zinc finger protein 7	AK168948|Zfp7|223669|zinc finger protein 7	BC062103|Zfp7|223669|zinc finger protein 7
mm9_v1_chr19_+_29038321_29038434	0.111689	AIRE.p2	AK016572|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2	NM_028922|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2	AK041581|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2
mm9_v1_chr19_+_29038435_29038489	0.109759	AIRE.p2	BC052412|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2
mm9_v1_chr2_-_63936044_63936094	0.109418	AIRE.p2	AF263913|Fign|60344|fidgetin	AK163474|Fign|60344|fidgetin	AK164536|Fign|60344|fidgetin	NM_021716|Fign|60344|fidgetin	AK143787|Fign|60344|fidgetin	BC059266|Fign|60344|fidgetin
mm9_v1_chr2_-_120178819_120178881	0.10882	AIRE.p2	BC007479|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281050|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281051|Vps39|269338|vacuolar protein sorting 39 (yeast)	AB028844|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK141424|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK038824|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK042253|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK154103|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK170831|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK171008|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK159889|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK160109|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK084743|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_147153|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_178851|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK140041|Vps39|269338|vacuolar protein sorting 39 (yeast)
mm9_v1_chr5_+_90919739_90919752	0.108415	AIRE.p2	NM_007423|Afp|11576|alpha fetoprotein
mm9_v1_chr7_+_5626205_5626228	0.108396	AIRE.p2	AF324867|Vmn1r62|81016|vomeronasal 1 receptor 62	NM_030741|Vmn1r62|81016|vomeronasal 1 receptor 62	BC113757|Vmn1r62|81016|vomeronasal 1 receptor 62
mm9_v1_chr2_+_30271579_30271778	0.108226	AIRE.p2	AK049184|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	BC006626|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	BC052852|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	AK160980|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	AY035997|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	AK046288|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)
mm9_v1_chr1_+_163899318_163899328	0.108174	AIRE.p2	AK016394|Pigc|67292|phosphatidylinositol glycan anchor biosynthesis, class C	NM_001039045|Pigc|67292|phosphatidylinositol glycan anchor biosynthesis, class C	NM_026078|Pigc|67292|phosphatidylinositol glycan anchor biosynthesis, class C	AK152660|Pigc|67292|phosphatidylinositol glycan anchor biosynthesis, class C
mm9_v1_chr14_-_56407622_56407693	0.108116	AIRE.p2	AF178953|Ripk3|56532|receptor-interacting serine-threonine kinase 3	BC029210|Ripk3|56532|receptor-interacting serine-threonine kinase 3	AK154505|Ripk3|56532|receptor-interacting serine-threonine kinase 3	AK012177|Ripk3|56532|receptor-interacting serine-threonine kinase 3	NM_001164107|Ripk3|56532|receptor-interacting serine-threonine kinase 3	NM_001164108|Ripk3|56532|receptor-interacting serine-threonine kinase 3	NM_019955|Ripk3|56532|receptor-interacting serine-threonine kinase 3
mm9_v1_chr4_-_132288428_132288460	0.108021	AIRE.p2	AK029920|Xkr8|381560|X Kell blood group precursor related family member 8 homolog	AY534254|Xkr8|381560|X Kell blood group precursor related family member 8 homolog	NM_201368|Xkr8|381560|X Kell blood group precursor related family member 8 homolog
mm9_v1_chr19_-_36700493_36700513	0.10793	AIRE.p2	AK149600|1500017E21Rik|668215|RIKEN cDNA 1500017E21 gene	AK149390|1500017E21Rik|668215|RIKEN cDNA 1500017E21 gene
mm9_v1_chr11_+_49060978_49060984	0.107891	AIRE.p2	AK040121|Mgat1|17308|mannoside acetylglucosaminyltransferase 1	NM_001110149|Mgat1|17308|mannoside acetylglucosaminyltransferase 1
mm9_v1_chrX_-_7753020_7753088	0.105926	AIRE.p2	AK166256|Tbc1d25|209815|TBC1 domain family, member 25	AK040932|Tbc1d25|209815|TBC1 domain family, member 25	BC060178|Tbc1d25|209815|TBC1 domain family, member 25
mm9_v1_chr5_+_136455974_136455989	0.105791	AIRE.p2	BC100745|Zp3|22788|zona pellucida glycoprotein 3	BC103583|Zp3|22788|zona pellucida glycoprotein 3	BC103584|Zp3|22788|zona pellucida glycoprotein 3	BC103585|Zp3|22788|zona pellucida glycoprotein 3	M20026|Zp3|22788|zona pellucida glycoprotein 3	NM_011776|Zp3|22788|zona pellucida glycoprotein 3	AK131934|Zp3|22788|zona pellucida glycoprotein 3	BC099465|Zp3|22788|zona pellucida glycoprotein 3
mm9_v1_chrX_+_135744582_135744582	0.105401	AIRE.p2	NM_001164630|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1	NM_175541|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1
mm9_v1_chr1_-_130256055_130256293	0.10529	AIRE.p2	AK188642|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK177954|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK180079|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK183692|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK194535|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK210474|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK211618|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK150726|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK146896|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	BC051658|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	BC057584|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK145520|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK146770|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK146272|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK088493|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	D86726|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	NM_008567|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	BC050886|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)
mm9_v1_chr3_-_75073981_75073999	0.105119	AIRE.p2	AF251276|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2	AK007347|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2	AK008931|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2	NM_026460|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2
mm9_v1_chr1_-_164914621_164914660	0.104538	AIRE.p2	NM_008030|Fmo3|14262|flavin containing monooxygenase 3	U87147|Fmo3|14262|flavin containing monooxygenase 3	AK149440|Fmo3|14262|flavin containing monooxygenase 3	AK050123|Fmo3|14262|flavin containing monooxygenase 3
mm9_v1_chr10_+_98569715_98569826	0.104055	AIRE.p2	BC144819|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	BC145801|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	BC099926|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	AK050233|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	AK090075|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	NM_027740|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	AK045302|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)
mm9_v1_chr6_+_57354359_57354457	0.103506	AIRE.p2	BC125351|Vmn1r19|171200|vomeronasal 1 receptor 19	BC132235|Vmn1r19|171200|vomeronasal 1 receptor 19	NM_134182|Vmn1r19|171200|vomeronasal 1 receptor 19
mm9_v1_chr3_-_90237092_90237456	0.102882	AIRE.p2	BC055344|Ints3|229543|integrator complex subunit 3	AK033296|Ints3|229543|integrator complex subunit 3	AK146699|Ints3|229543|integrator complex subunit 3
mm9_v1_chr15_+_76730338_76730405	0.102204	AIRE.p2	AK013148|Commd5|66398|COMM domain containing 5	AK010045|Commd5|66398|COMM domain containing 5	NM_025536|Commd5|66398|COMM domain containing 5	BC025891|Commd5|66398|COMM domain containing 5
mm9_v1_chr1_+_137904795_137904795	0.0989152	AIRE.p2	NM_001160145|Tmem9|66241|transmembrane protein 9
mm9_v1_chr5_+_144119016_144119016	0.098432	AIRE.p2	DQ193535|Grid2ip|170935|glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1	NM_001159321|Grid2ip|170935|glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1
mm9_v1_chr11_-_69495447_69495585	0.0972286	AIRE.p2	NM_030702|Senp3|80886|SUMO/sentrin specific peptidase 3	AK088608|Senp3|80886|SUMO/sentrin specific peptidase 3	NM_001163571|Senp3|80886|SUMO/sentrin specific peptidase 3
mm9_v1_chr1_-_84931657_84931708	0.09647	AIRE.p2	BC023456|Slc16a14|71781|solute carrier family 16 (monocarboxylic acid transporters), member 14	NM_027921|Slc16a14|71781|solute carrier family 16 (monocarboxylic acid transporters), member 14	AK049846|Slc16a14|71781|solute carrier family 16 (monocarboxylic acid transporters), member 14
mm9_v1_chr5_+_150921233_150921280	0.0964163	AIRE.p2	AK157981|Fry|320365|furry homolog (Drosophila)
mm9_v1_chr19_-_46470175_46470258	0.0961331	AIRE.p2	BC007131|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK010632|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AB010297|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	NM_016860|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK019518|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK168889|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK088062|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK167450|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK162248|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
mm9_v1_chrX_-_72625260_72625379	0.092832	AIRE.p2	BC138347|F8|14069|coagulation factor VIII	BC145245|F8|14069|coagulation factor VIII	L05573|F8|14069|coagulation factor VIII	NM_001161373|F8|14069|coagulation factor VIII	NM_001161374|F8|14069|coagulation factor VIII	NM_007977|F8|14069|coagulation factor VIII
mm9_v1_chr10_-_80945445_80945464	0.0928222	AIRE.p2	NM_176954|Celf5|319586|CUGBP, Elav-like family member 5
mm9_v1_chr7_+_138554180_138554255	0.0927949	AIRE.p2	BC044826|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain	AK004889|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain	AK076535|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain	AK152325|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain	BC011235|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain	BC035231|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain
mm9_v1_chr3_-_73512328_73512336	0.0921452	AIRE.p2	AK050337|Bche|12038|butyrylcholinesterase	NM_009738|Bche|12038|butyrylcholinesterase
mm9_v1_chr5_-_100465086_100465197	0.0920192	AIRE.p2	AK011143|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like
mm9_v1_chr17_-_74723283_74723283	0.0919264	AIRE.p2	AY297538|Dpy30|66310|dpy-30 homolog (C. elegans)	NM_024428|Dpy30|66310|dpy-30 homolog (C. elegans)
mm9_v1_chr4_+_131399376_131399438	0.0911579	AIRE.p2	AK002317|Mecr|26922|mitochondrial trans-2-enoyl-CoA reductase	AK002533|Mecr|26922|mitochondrial trans-2-enoyl-CoA reductase	NM_025297|Mecr|26922|mitochondrial trans-2-enoyl-CoA reductase	AK045834|Mecr|26922|mitochondrial trans-2-enoyl-CoA reductase	BC003864|Mecr|26922|mitochondrial trans-2-enoyl-CoA reductase
mm9_v1_chr6_+_38484796_38484868	0.0911379	AIRE.p2	AK003231|1110001J03Rik|66117|RIKEN cDNA 1110001J03 gene	BC059710|1110001J03Rik|66117|RIKEN cDNA 1110001J03 gene	AK008291|1110001J03Rik|66117|RIKEN cDNA 1110001J03 gene	NM_025363|1110001J03Rik|66117|RIKEN cDNA 1110001J03 gene	AK009186|1110001J03Rik|66117|RIKEN cDNA 1110001J03 gene
mm9_v1_chrX_-_100061691_100061691	0.0906282	AIRE.p2	AK006578|1700031F05Rik|73300|RIKEN cDNA 1700031F05 gene	NM_028496|1700031F05Rik|73300|RIKEN cDNA 1700031F05 gene
mm9_v1_chr17_+_21870690_21870690	0.0891002	AIRE.p2	AK147958|Zfp229|381067|zinc finger protein	NM_001164676|Zfp229|381067|zinc finger protein
mm9_v1_chr8_-_71601126_71601131	0.0888528	AIRE.p2	AK076433|Slc18a1|110877|solute carrier family 18 (vesicular monoamine), member 1	AK144034|Slc18a1|110877|solute carrier family 18 (vesicular monoamine), member 1
mm9_v1_chr5_+_110660011_110660183	0.085698	AIRE.p2	AK132187|Ankle2|71782|ankyrin repeat and LEM domain containing 2	BC065071|Ankle2|71782|ankyrin repeat and LEM domain containing 2	NM_027922|Ankle2|71782|ankyrin repeat and LEM domain containing 2	AK043925|Ankle2|71782|ankyrin repeat and LEM domain containing 2
mm9_v1_chr16_+_92292580_92292633	0.0853975	AIRE.p2	AK008619|Kcne2|246133|potassium voltage-gated channel, Isk-related subfamily, gene 2	NM_134110|Kcne2|246133|potassium voltage-gated channel, Isk-related subfamily, gene 2
mm9_v1_chr14_-_69151731_69151797	0.0845479	AIRE.p2	AF013107|Adam7|11500|a disintegrin and metallopeptidase domain 7	AK136692|Adam7|11500|a disintegrin and metallopeptidase domain 7	NM_007402|Adam7|11500|a disintegrin and metallopeptidase domain 7	AK020312|Adam7|11500|a disintegrin and metallopeptidase domain 7
mm9_v1_chr1_-_138856866_138857085	0.082888	AIRE.p2	AB221629|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	BC137845|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	M81385|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	NM_030676|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2
mm9_v1_chr13_-_115078961_115078988	0.0821028	AIRE.p2	AK035175|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4
mm9_v1_chr7_-_24993103_24993167	0.0808862	AIRE.p2	BC005456|Zfp111|56707|zinc finger protein 111	AK135436|Zfp111|56707|zinc finger protein 111	NM_019940|Zfp111|56707|zinc finger protein 111
mm9_v1_chr13_+_85329004_85329091	0.0808672	AIRE.p2	AF287135|Ccnh|66671|cyclin H	AK137849|Ccnh|66671|cyclin H	AK078059|Ccnh|66671|cyclin H	NM_023243|Ccnh|66671|cyclin H
mm9_v1_chr1_+_53353995_53354002	0.0801072	AIRE.p2	BC023903|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)
mm9_v1_chr10_-_122633922_122634056	0.078052	AIRE.p2	L10903|Usp15|14479|ubiquitin specific peptidase 15	AF468037|Usp15|14479|ubiquitin specific peptidase 15	AK145749|Usp15|14479|ubiquitin specific peptidase 15	NM_027604|Usp15|14479|ubiquitin specific peptidase 15	AK046332|Usp15|14479|ubiquitin specific peptidase 15	AK083303|Usp15|14479|ubiquitin specific peptidase 15	AK133852|Usp15|14479|ubiquitin specific peptidase 15	AK122301|Usp15|14479|ubiquitin specific peptidase 15	BC050042|Usp15|14479|ubiquitin specific peptidase 15	AK164382|Usp15|14479|ubiquitin specific peptidase 15	AK163315|Usp15|14479|ubiquitin specific peptidase 15	AK168755|Usp15|14479|ubiquitin specific peptidase 15	AK161469|Usp15|14479|ubiquitin specific peptidase 15	AK161957|Usp15|14479|ubiquitin specific peptidase 15	AK163284|Usp15|14479|ubiquitin specific peptidase 15
mm9_v1_chr7_-_125259660_125259706	0.077621	AIRE.p2	BC051205|Rps15a|267019|ribosomal protein S15A	BC054792|Rps15a|267019|ribosomal protein S15A	NM_170669|Rps15a|267019|ribosomal protein S15A	BC076563|Rps15a|267019|ribosomal protein S15A	AK152932|Rps15a|267019|ribosomal protein S15A	AK008350|Rps15a|267019|ribosomal protein S15A	AK012485|Rps15a|267019|ribosomal protein S15A	AK011514|Rps15a|267019|ribosomal protein S15A	AK012618|Rps15a|267019|ribosomal protein S15A	AK019235|Rps15a|267019|ribosomal protein S15A	AK028135|Rps15a|267019|ribosomal protein S15A	BC086885|Rps15a|267019|ribosomal protein S15A	BC087867|Rps15a|267019|ribosomal protein S15A	AK032522|Rps15a|267019|ribosomal protein S15A	AK010652|Rps15a|267019|ribosomal protein S15A
mm9_v1_chr15_-_74942109_74942378	0.0773611	AIRE.p2	M18466|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2	D86232|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2	BC092082|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2	NM_001099217|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2
mm9_v1_chr5_-_121459315_121459358	0.0766295	AIRE.p2	D29965|Rph3a|19894|rabphilin 3A	AB112924|Rph3a|19894|rabphilin 3A
mm9_v1_chr1_-_4350323_4350394	0.0765859	AIRE.p2	BC038794|Rp1|19888|retinitis pigmentosa 1 (human)	BC120927|Rp1|19888|retinitis pigmentosa 1 (human)	BC120928|Rp1|19888|retinitis pigmentosa 1 (human)	AF155141|Rp1|19888|retinitis pigmentosa 1 (human)	AK044413|Rp1|19888|retinitis pigmentosa 1 (human)	BC096607|Rp1|19888|retinitis pigmentosa 1 (human)	NM_011283|Rp1|19888|retinitis pigmentosa 1 (human)
mm9_v1_chr14_-_21475760_21475766	0.0755819	AIRE.p2	NM_021508|Myoz1|59011|myozenin 1
mm9_v1_chr2_-_125657845_125657847	0.0754735	AIRE.p2	
mm9_v1_chr2_-_51828440_51828551	0.0753534	AIRE.p2	BC002019|Nmi|64685|N-myc (and STAT) interactor	AK146577|Nmi|64685|N-myc (and STAT) interactor
mm9_v1_chr16_+_29579427_29579538	0.0746124	AIRE.p2	AB044138|Opa1|74143|optic atrophy 1 homolog (human)	NM_133752|Opa1|74143|optic atrophy 1 homolog (human)	AK029157|Opa1|74143|optic atrophy 1 homolog (human)	AK053861|Opa1|74143|optic atrophy 1 homolog (human)	AK004715|Opa1|74143|optic atrophy 1 homolog (human)	AK030835|Opa1|74143|optic atrophy 1 homolog (human)	AK145620|Opa1|74143|optic atrophy 1 homolog (human)	AK038446|Opa1|74143|optic atrophy 1 homolog (human)	BC052704|Opa1|74143|optic atrophy 1 homolog (human)	AK050383|Opa1|74143|optic atrophy 1 homolog (human)	AK164872|Opa1|74143|optic atrophy 1 homolog (human)	AK044657|Opa1|74143|optic atrophy 1 homolog (human)	BC138665|Opa1|74143|optic atrophy 1 homolog (human)	BC145959|Opa1|74143|optic atrophy 1 homolog (human)
mm9_v1_chr14_-_21475679_21475701	0.074597	AIRE.p2	AY013298|Myoz1|59011|myozenin 1	AJ005620|Myoz1|59011|myozenin 1
mm9_v1_chr6_-_12699189_12699252	0.0740321	AIRE.p2	NM_001164805|Thsd7a|330267|thrombospondin, type I, domain containing 7A
mm9_v1_chr19_+_10525829_10525836	0.0720568	AIRE.p2	
mm9_v1_chr13_+_78337168_78337277	0.0720527	AIRE.p2	AK082108|A830082K12Rik|320174|RIKEN cDNA A830082K12 gene
mm9_v1_chrX_+_20235512_20235607	0.0704523	AIRE.p2	AK088057|Uba1|22201|ubiquitin-like modifier activating enzyme 1	AK088528|Uba1|22201|ubiquitin-like modifier activating enzyme 1	NM_009457|Uba1|22201|ubiquitin-like modifier activating enzyme 1	BC145984|Uba1|22201|ubiquitin-like modifier activating enzyme 1	BC138200|Uba1|22201|ubiquitin-like modifier activating enzyme 1	D10576|Uba1|22201|ubiquitin-like modifier activating enzyme 1
mm9_v1_chr4_+_141000576_141000628	0.0653597	AIRE.p2	NM_009541|Zbtb17|22642|zinc finger and BTB domain containing 17	U14556|Zbtb17|22642|zinc finger and BTB domain containing 17	AK051971|Zbtb17|22642|zinc finger and BTB domain containing 17	U22396|Zbtb17|22642|zinc finger and BTB domain containing 17	BC060055|Zbtb17|22642|zinc finger and BTB domain containing 17	AK134251|Zbtb17|22642|zinc finger and BTB domain containing 17
mm9_v1_chr12_+_53198729_53198769	0.0629344	AIRE.p2	NM_029760|Nubpl|76826|nucleotide binding protein-like	AK152377|Nubpl|76826|nucleotide binding protein-like	AK083643|Nubpl|76826|nucleotide binding protein-like	BC062175|Nubpl|76826|nucleotide binding protein-like	AK010827|Nubpl|76826|nucleotide binding protein-like	AK141257|Nubpl|76826|nucleotide binding protein-like
mm9_v1_chr18_+_78012506_78012506	0.062834	AIRE.p2	NM_007505|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1
mm9_v1_chr17_-_35971652_35971809	0.0627904	AIRE.p2	AK080778|Tubb5|22154|tubulin, beta 5	AK088137|Tubb5|22154|tubulin, beta 5
mm9_v1_chr2_+_130020929_130020929	0.0623981	AIRE.p2	AF417581|Tmc2|192140|transmembrane channel-like gene family 2	NM_138655|Tmc2|192140|transmembrane channel-like gene family 2
mm9_v1_chr12_+_99985150_99985255	0.0622345	AIRE.p2	AK076066|Zc3h14|75553|zinc finger CCCH type containing 14	NM_001008506|Zc3h14|75553|zinc finger CCCH type containing 14	NM_001160107|Zc3h14|75553|zinc finger CCCH type containing 14	NM_029334|Zc3h14|75553|zinc finger CCCH type containing 14	AK160937|Zc3h14|75553|zinc finger CCCH type containing 14	AK050226|Zc3h14|75553|zinc finger CCCH type containing 14	BC024824|Zc3h14|75553|zinc finger CCCH type containing 14	AK048046|Zc3h14|75553|zinc finger CCCH type containing 14	BC034760|Zc3h14|75553|zinc finger CCCH type containing 14
mm9_v1_chr5_-_71233855_71233855	0.0619373	AIRE.p2	AK034332|Gabrg1|14405|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	NM_010252|Gabrg1|14405|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1
mm9_v1_chr8_+_107471254_107471257	0.0604732	AIRE.p2	AK040349|Ces2f|71903|carboxylesterase 2F	BC117742|Ces2f|71903|carboxylesterase 2F	BC117743|Ces2f|71903|carboxylesterase 2F	NM_001079865|Ces2f|71903|carboxylesterase 2F
mm9_v1_chr8_+_19495096_19495096	0.0567683	AIRE.p2	AJ298147|Defb7|246080|defensin beta 7	NM_139220|Defb7|246080|defensin beta 7
mm9_v1_chr8_+_109206967_109207060	0.0563518	AIRE.p2	AK085030|Tmco7|272538|transmembrane and coiled-coil domains 7	NM_173037|Tmco7|272538|transmembrane and coiled-coil domains 7	AK077757|Tmco7|272538|transmembrane and coiled-coil domains 7	AK054283|Tmco7|272538|transmembrane and coiled-coil domains 7	BC066134|Tmco7|272538|transmembrane and coiled-coil domains 7	BC066869|Tmco7|272538|transmembrane and coiled-coil domains 7	BC069838|Tmco7|272538|transmembrane and coiled-coil domains 7	AK076373|Tmco7|272538|transmembrane and coiled-coil domains 7	AK173250|Tmco7|272538|transmembrane and coiled-coil domains 7
mm9_v1_chr10_-_20444654_20444883	0.0546925	AIRE.p2	AF190639|Pde7b|29863|phosphodiesterase 7B	BC130267|Pde7b|29863|phosphodiesterase 7B	AK020137|Pde7b|29863|phosphodiesterase 7B	AK040876|Pde7b|29863|phosphodiesterase 7B	NM_013875|Pde7b|29863|phosphodiesterase 7B	AK035385|Pde7b|29863|phosphodiesterase 7B
mm9_v1_chr1_-_93829376_93829378	0.0525668	AIRE.p2	AK170461|Hdac4|208727|histone deacetylase 4
mm9_v1_chr2_+_109120894_109121025	0.0519601	AIRE.p2	BC016095|Kif18a|228421|kinesin family member 18A	NM_139303|Kif18a|228421|kinesin family member 18A	AK049197|Kif18a|228421|kinesin family member 18A	AK135735|Kif18a|228421|kinesin family member 18A	AK082913|Kif18a|228421|kinesin family member 18A	AK041469|Kif18a|228421|kinesin family member 18A	AK044795|Kif18a|228421|kinesin family member 18A	AK164649|Kif18a|228421|kinesin family member 18A	AK036722|Kif18a|228421|kinesin family member 18A	AK164114|Kif18a|228421|kinesin family member 18A
mm9_v1_chr15_-_96829997_96830015	0.0501895	AIRE.p2	AK005887|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr8_+_97381349_97381467	0.0501358	AIRE.p2	NM_009090|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	BC099548|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	AK160053|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	AK137796|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	AK146763|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	AK151270|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	D83999|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	BC002023|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C
mm9_v1_chr9_+_15110657_15110715	0.0494597	AIRE.p2	NM_027261|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	NM_029248|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK016109|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK050165|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK158208|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK161656|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK166329|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK166633|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK012662|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK014920|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	BC110660|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D
mm9_v1_chr11_+_84008939_84008965	0.0492862	AIRE.p2	NM_133360|Acaca|107476|acetyl-Coenzyme A carboxylase alpha	AY451393|Acaca|107476|acetyl-Coenzyme A carboxylase alpha
mm9_v1_chr17_+_35068184_35068197	0.0479473	AIRE.p2	NM_010893|Neu1|18010|neuraminidase 1
mm9_v1_chr15_-_78994753_78994921	0.0475225	AIRE.p2	BC023356|Sox10|20665|SRY-box containing gene 10	BC051058|Sox10|20665|SRY-box containing gene 10	AK185165|Sox10|20665|SRY-box containing gene 10	AK193670|Sox10|20665|SRY-box containing gene 10	AK185297|Sox10|20665|SRY-box containing gene 10	BC025171|Sox10|20665|SRY-box containing gene 10	AK043220|Sox10|20665|SRY-box containing gene 10	U66141|Sox10|20665|SRY-box containing gene 10	AK042542|Sox10|20665|SRY-box containing gene 10	NM_011437|Sox10|20665|SRY-box containing gene 10
mm9_v1_chr7_-_127821033_127821198	0.0474315	AIRE.p2	AK034016|9030407P20Rik|71568|RIKEN cDNA 9030407P20 gene	AK018490|9030407P20Rik|71568|RIKEN cDNA 9030407P20 gene
mm9_v1_chr19_-_4906607_4906628	0.0464069	AIRE.p2	AK037753|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	BC076577|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK161343|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK045850|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK168901|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	NM_001033128|Bbs1|52028|Bardet-Biedl syndrome 1 (human)
mm9_v1_chr11_-_50244605_50244617	0.0457596	AIRE.p2	AK046633|Rufy1|216724|RUN and FYVE domain containing 1	NM_172557|Rufy1|216724|RUN and FYVE domain containing 1	AK051178|Rufy1|216724|RUN and FYVE domain containing 1
mm9_v1_chr8_+_23048823_23048823	0.0447052	AIRE.p2	AJ437650|Defb35|246084|defensin beta 35	NM_139224|Defb35|246084|defensin beta 35
mm9_v1_chr6_-_55631039_55631067	0.0436083	AIRE.p2	AK144303|Neurod6|11922|neurogenic differentiation 6	BC087831|Neurod6|11922|neurogenic differentiation 6	U29086|Neurod6|11922|neurogenic differentiation 6
mm9_v1_chr8_-_122364230_122364443	0.041842	AIRE.p2	CT010261|Cotl1|72042|coactosin-like 1 (Dictyostelium)	BC011068|Cotl1|72042|coactosin-like 1 (Dictyostelium)	BC010249|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK150888|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK007994|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK008085|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK010052|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK039644|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK151690|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK157694|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK172403|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK148854|Cotl1|72042|coactosin-like 1 (Dictyostelium)
mm9_v1_chr5_-_123237776_123238028	0.0396431	AIRE.p2	
mm9_v1_chr13_-_56649898_56649912	0.038919	AIRE.p2	NM_010702|Lect2|16841|leukocyte cell-derived chemotaxin 2
mm9_v1_chr3_-_58999025_58999026	0.0378388	AIRE.p2	AK080394|Gpr87|84111|G protein-coupled receptor 87
mm9_v1_chr5_+_130371592_130371637	0.0377286	AIRE.p2	AK010551|Scand3|71970|SCAN domain containing 3	NM_183088|Scand3|71970|SCAN domain containing 3	BC137610|Scand3|71970|SCAN domain containing 3
mm9_v1_chr2_-_177183009_177183079	0.0374856	AIRE.p2	BC092145|Gm14322|626802|predicted gene 14322
mm9_v1_chr4_-_77857753_77857864	0.0363519	AIRE.p2	AK083789|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	AK045658|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	AK034145|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	AK080973|Ptprd|19266|protein tyrosine phosphatase, receptor type, D
mm9_v1_chrX_-_17149313_17149460	0.0352855	AIRE.p2	BC012515|Fundc1|72018|FUN14 domain containing 1	AK168868|Fundc1|72018|FUN14 domain containing 1	BC030487|Fundc1|72018|FUN14 domain containing 1	AK005163|Fundc1|72018|FUN14 domain containing 1	NM_028058|Fundc1|72018|FUN14 domain containing 1
mm9_v1_chr15_-_96861590_96861647	0.0273319	AIRE.p2	BC024072|Slc38a4|69354|solute carrier family 38, member 4	BC024123|Slc38a4|69354|solute carrier family 38, member 4	AB055004|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr12_-_81213930_81214002	0.0267247	AIRE.p2	M58566|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	BC037998|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	BC016621|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK077855|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK021295|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK036950|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK051035|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	NM_007564|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1
mm9_v1_chr16_+_14163414_14163441	0.0264614	AIRE.p2	AK012861|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	AK037289|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	AK012830|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	AK146982|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	AK169743|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)
mm9_v1_chr10_-_22539951_22539979	0.026195	AIRE.p2	AK161795|Tcf21|21412|transcription factor 21	AK135423|Tcf21|21412|transcription factor 21
mm9_v1_chr6_+_40421405_40421491	0.025782	AIRE.p2	AK013425|Ssbp1|381760|single-stranded DNA binding protein 1	NM_028358|Ssbp1|381760|single-stranded DNA binding protein 1	NM_212468|Ssbp1|381760|single-stranded DNA binding protein 1	BC028648|Ssbp1|381760|single-stranded DNA binding protein 1	BC061183|Ssbp1|381760|single-stranded DNA binding protein 1	AK090242|Ssbp1|381760|single-stranded DNA binding protein 1	AK090272|Ssbp1|381760|single-stranded DNA binding protein 1	BC060290|Ssbp1|381760|single-stranded DNA binding protein 1	AK160556|Ssbp1|381760|single-stranded DNA binding protein 1
mm9_v1_chr5_+_93602126_93602279	0.0254491	AIRE.p2	AK018083|Sept11|52398|septin 11	AK075989|Sept11|52398|septin 11
mm9_v1_chr10_+_53057491_53057558	0.0250155	AIRE.p2	NM_001141927|Pln|18821|phospholamban	NM_023129|Pln|18821|phospholamban	BC061097|Pln|18821|phospholamban	AK002622|Pln|18821|phospholamban	AK040718|Pln|18821|phospholamban	S46792|Pln|18821|phospholamban	AK142708|Pln|18821|phospholamban	AK052199|Pln|18821|phospholamban
mm9_v1_chr4_-_145749008_145749008	0.0247128	AIRE.p2	NM_001085522|Gm13251|433791|predicted gene 13251
mm9_v1_chr11_+_68933954_68933975	0.0242442	AIRE.p2	AK050791|Hes7|84653|hairy and enhancer of split 7 (Drosophila)	BC134378|Hes7|84653|hairy and enhancer of split 7 (Drosophila)	NM_033041|Hes7|84653|hairy and enhancer of split 7 (Drosophila)	AB049065|Hes7|84653|hairy and enhancer of split 7 (Drosophila)
mm9_v1_chr7_+_148127289_148127427	0.0241237	AIRE.p2	AK171694|Athl1|212974|ATH1, acid trehalase-like 1 (yeast)
mm9_v1_chr5_+_28168486_28168486	0.0240251	AIRE.p2	NM_008314|Htr5a|15563|5-hydroxytryptamine (serotonin) receptor 5A
mm9_v1_chr2_-_131000485_131000584	0.0237758	AIRE.p2	BC006046|Spef1|70997|sperm flagellar 1	AK047675|Spef1|70997|sperm flagellar 1	NM_027641|Spef1|70997|sperm flagellar 1	AY860964|Spef1|70997|sperm flagellar 1	AK016476|Spef1|70997|sperm flagellar 1
mm9_v1_chr5_+_136470670_136470775	0.023382	AIRE.p2	AK012137|Dtx2|74198|deltex 2 homolog (Drosophila)	AK054443|Dtx2|74198|deltex 2 homolog (Drosophila)	AK044105|Dtx2|74198|deltex 2 homolog (Drosophila)	BC024925|Dtx2|74198|deltex 2 homolog (Drosophila)	AB015423|Dtx2|74198|deltex 2 homolog (Drosophila)	AB015424|Dtx2|74198|deltex 2 homolog (Drosophila)	NM_023742|Dtx2|74198|deltex 2 homolog (Drosophila)
mm9_v1_chr12_-_106103214_106103237	0.0230177	AIRE.p2	BC141280|Clmn|94040|calmin
mm9_v1_chr14_-_76154241_76154387	0.0225475	AIRE.p2	AK140362|Cog3|338337|component of oligomeric golgi complex 3	NM_177381|Cog3|338337|component of oligomeric golgi complex 3	BC038030|Cog3|338337|component of oligomeric golgi complex 3
mm9_v1_chr5_-_42235518_42235530	0.0209007	AIRE.p2	AK046296|Bod1l|665775|biorientation of chromosomes in cell division 1-like	AK053690|Bod1l|665775|biorientation of chromosomes in cell division 1-like	AK134590|Bod1l|665775|biorientation of chromosomes in cell division 1-like
mm9_v1_chr9_-_103267226_103267309	0.0202789	AIRE.p2	AK172053|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC031362|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	NM_001134427|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	AK048941|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3
mm9_v1_chr16_+_87354429_87354497	0.019992	AIRE.p2	AY456393|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	NM_001159331|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	NM_026366|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC116393|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC116394|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK160298|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK145617|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC098330|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK012019|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AY536887|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)
mm9_v1_chrX_+_34847000_34847131	0.018953	AIRE.p2	AJ972666|Rhox4b|57737|reproductive homeobox 4B	NM_021300|Rhox4b|57737|reproductive homeobox 4B	AF265350|Rhox4b|57737|reproductive homeobox 4B	BC172126|Rhox4b|57737|reproductive homeobox 4B	BC172128|Rhox4e|194856|reproductive homeobox 4E	AB221641|Rhox4d|664610|reproductive homeobox 4D
mm9_v1_chr3_+_51299153_51299205	0.0188802	AIRE.p2	
mm9_v1_chr14_-_21475715_21475724	0.017801	AIRE.p2	AK041896|Myoz1|59011|myozenin 1	AK009077|Myoz1|59011|myozenin 1
mm9_v1_chr10_-_80630518_80630667	0.0173767	AIRE.p2	AK145367|Pias4|59004|protein inhibitor of activated STAT 4	AF109174|Pias4|59004|protein inhibitor of activated STAT 4
mm9_v1_chr9_-_96378951_96379045	0.0156792	AIRE.p2	AK007588|Rnf7|19823|ring finger protein 7	BC011127|Rnf7|19823|ring finger protein 7	AK002628|Rnf7|19823|ring finger protein 7	AK003248|Rnf7|19823|ring finger protein 7	AK003963|Rnf7|19823|ring finger protein 7	AK011328|Rnf7|19823|ring finger protein 7	AK146030|Rnf7|19823|ring finger protein 7	NM_011279|Rnf7|19823|ring finger protein 7	AF092877|Rnf7|19823|ring finger protein 7
mm9_v1_chr13_-_56649852_56649876	0.0150786	AIRE.p2	BC027753|Lect2|16841|leukocyte cell-derived chemotaxin 2	AB009687|Lect2|16841|leukocyte cell-derived chemotaxin 2
mm9_v1_chr2_-_13466273_13466302	0.0147803	AIRE.p2	AF045889|Trdmt1|13434|tRNA aspartic acid methyltransferase 1	AF012129|Trdmt1|13434|tRNA aspartic acid methyltransferase 1	AK050403|Trdmt1|13434|tRNA aspartic acid methyltransferase 1	AK029136|Trdmt1|13434|tRNA aspartic acid methyltransferase 1	BC087892|Trdmt1|13434|tRNA aspartic acid methyltransferase 1	NM_010067|Trdmt1|13434|tRNA aspartic acid methyltransferase 1
mm9_v1_chr5_+_31357119_31357185	0.0146908	AIRE.p2	BC053097|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	NM_023525|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	BC060119|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
mm9_v1_chr1_-_155698278_155698324	0.0129788	AIRE.p2	BC120491|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	BC131905|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	AJ554213|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	AK136655|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	AK136685|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	DQ402363|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	NM_178243|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene
mm9_v1_chr5_-_87997908_87998005	0.011529	AIRE.p2	AF026073|Sult1d1|53315|sulfotransferase family 1D, member 1	AK133530|Sult1d1|53315|sulfotransferase family 1D, member 1	U32371|Sult1d1|53315|sulfotransferase family 1D, member 1	BC066190|Sult1d1|53315|sulfotransferase family 1D, member 1	BC010752|Sult1d1|53315|sulfotransferase family 1D, member 1
mm9_v1_chr14_-_69273768_69273898	0.0113767	AIRE.p2	BC058782|Adam28|13522|a disintegrin and metallopeptidase domain 28	AF153350|Adam28|13522|a disintegrin and metallopeptidase domain 28	AK052479|Adam28|13522|a disintegrin and metallopeptidase domain 28	AK036800|Adam28|13522|a disintegrin and metallopeptidase domain 28	AK081736|Adam28|13522|a disintegrin and metallopeptidase domain 28	AF163293|Adam28|13522|a disintegrin and metallopeptidase domain 28	AF163290|Adam28|13522|a disintegrin and metallopeptidase domain 28	AF163291|Adam28|13522|a disintegrin and metallopeptidase domain 28	AF163292|Adam28|13522|a disintegrin and metallopeptidase domain 28	NM_001048175|Adam28|13522|a disintegrin and metallopeptidase domain 28	NM_010082|Adam28|13522|a disintegrin and metallopeptidase domain 28	NM_183366|Adam28|13522|a disintegrin and metallopeptidase domain 28
mm9_v1_chr19_-_4037895_4037928	0.00923848	AIRE.p2	D30687|Gstp1|14870|glutathione S-transferase, pi 1	NM_013541|Gstp1|14870|glutathione S-transferase, pi 1	BC002048|Gstp1|14870|glutathione S-transferase, pi 1	BC061109|Gstp1|14870|glutathione S-transferase, pi 1
mm9_v1_chr7_-_52973262_52973371	0.00790375	AIRE.p2	AK146414|Sphk2|56632|sphingosine kinase 2	AK151990|Sphk2|56632|sphingosine kinase 2	BC053737|Sphk2|56632|sphingosine kinase 2	AF245448|Sphk2|56632|sphingosine kinase 2	NM_001172561|Sphk2|56632|sphingosine kinase 2	NM_203280|Sphk2|56632|sphingosine kinase 2
mm9_v1_chr17_-_53985142_53985282	0.00756093	AIRE.p2	AK007384|Sult1c2|69083|sulfotransferase family, cytosolic, 1C, member 2	AK144336|Sult1c2|69083|sulfotransferase family, cytosolic, 1C, member 2	BC022665|Sult1c2|69083|sulfotransferase family, cytosolic, 1C, member 2	AY005469|Sult1c2|69083|sulfotransferase family, cytosolic, 1C, member 2	NM_026935|Sult1c2|69083|sulfotransferase family, cytosolic, 1C, member 2
mm9_v1_chr19_-_29095519_29095616	0.00744785	AIRE.p2	
mm9_v1_chr1_+_165978346_165978413	0.00740277	AIRE.p2	AK153623|Sele|20339|selectin, endothelial cell	M87862|Sele|20339|selectin, endothelial cell	NM_011345|Sele|20339|selectin, endothelial cell	BC119083|Sele|20339|selectin, endothelial cell	BC120795|Sele|20339|selectin, endothelial cell
mm9_v1_chr4_+_107562417_107562508	0.00686261	AIRE.p2	AK050486|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	AK003575|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	AK160674|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	AK050533|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	AK002776|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	NM_028754|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	BC019215|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene
mm9_v1_chrX_+_34928967_34929045	0.00629677	AIRE.p2	BC147696|Rhox4d|664610|reproductive homeobox 4D	BC172126|Rhox4b|57737|reproductive homeobox 4B	AJ972668|Rhox4d|664610|reproductive homeobox 4D	NM_001039695|Rhox4d|664610|reproductive homeobox 4D	AB221641|Rhox4d|664610|reproductive homeobox 4D
mm9_v1_chr16_+_14163356_14163402	0.0054564	AIRE.p2	NM_001114085|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	NM_023317|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	AK150826|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	AK166858|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	BC023267|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)
mm9_v1_chr5_+_53174293_53174344	0.00471894	AIRE.p2	AK138997|Zcchc4|78796|zinc finger, CCHC domain containing 4	AK049511|Zcchc4|78796|zinc finger, CCHC domain containing 4	NM_030185|Zcchc4|78796|zinc finger, CCHC domain containing 4	AK019621|Zcchc4|78796|zinc finger, CCHC domain containing 4	AK143805|Zcchc4|78796|zinc finger, CCHC domain containing 4
mm9_v1_chr6_-_113481546_113481673	0.000219397	AIRE.p2	AK020058|Tmem111|66087|transmembrane protein 111	AK046264|Tmem111|66087|transmembrane protein 111	BC004641|Tmem111|66087|transmembrane protein 111	AK075595|Tmem111|66087|transmembrane protein 111	NM_175101|Tmem111|66087|transmembrane protein 111	AK164779|Tmem111|66087|transmembrane protein 111
mm9_v1_chr3_+_54539460_54539519	4.55906e-05	AIRE.p2	AK005296|Alg5|66248|asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase)	NM_025442|Alg5|66248|asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase)	AK003818|Alg5|66248|asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase)	AK161187|Alg5|66248|asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase)	AK030567|Alg5|66248|asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase)	AK006206|Alg5|66248|asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase)	AK011159|Alg5|66248|asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase)	BC027160|Alg5|66248|asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase)
