mm9_v1_chr5_-_108978950_108979047	33.1637	AUGGCUU	BC014803|Cplx1|12889|complexin 1	D38614|Cplx1|12889|complexin 1	AK158166|Cplx1|12889|complexin 1	AK134820|Cplx1|12889|complexin 1	AK159026|Cplx1|12889|complexin 1	NM_007756|Cplx1|12889|complexin 1
mm9_v1_chr14_-_68743060_68743060	31.6228	AUGGCUU	NM_008691|Nefm|18040|neurofilament, medium polypeptide
mm9_v1_chr10_+_4795808_4795848	27.9935	AUGGCUU	AF535143|Syne1|64009|synaptic nuclear envelope 1	NM_153399|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr1_-_175297778_175297829	27.7947	AUGGCUU	AK036352|Cadm3|94332|cell adhesion molecule 3	AK053077|Cadm3|94332|cell adhesion molecule 3	AK038917|Cadm3|94332|cell adhesion molecule 3	NM_053199|Cadm3|94332|cell adhesion molecule 3
mm9_v1_chr4_-_86876328_86876443	25.6052	AUGGCUU	AK038800|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK136058|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	NM_172426|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr7_-_82454147_82454194	24.6297	AUGGCUU	BC079568|Sv2b|64176|synaptic vesicle glycoprotein 2 b	NM_153579|Sv2b|64176|synaptic vesicle glycoprotein 2 b
mm9_v1_chr7_-_82453216_82453273	24.195	AUGGCUU	AK147261|Sv2b|64176|synaptic vesicle glycoprotein 2 b	NM_001109753|Sv2b|64176|synaptic vesicle glycoprotein 2 b
mm9_v1_chr8_+_98226914_98226962	22.4551	AUGGCUU	NM_001195006|Ndrg4|234593|N-myc downstream regulated gene 4	NM_145602|Ndrg4|234593|N-myc downstream regulated gene 4	AK168873|Ndrg4|234593|N-myc downstream regulated gene 4	AK090374|Ndrg4|234593|N-myc downstream regulated gene 4	AK144294|Ndrg4|234593|N-myc downstream regulated gene 4	BC006595|Ndrg4|234593|N-myc downstream regulated gene 4
mm9_v1_chr11_+_42233258_42233286	21.3662	AUGGCUU	AK090279|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	NM_008070|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	BC145973|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	BC145975|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2
mm9_v1_chr1_+_34858544_34858609	21.1769	AUGGCUU	AK169957|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	NM_183019|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	BC139371|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	BC139397|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	AK031310|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	AK163424|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	AK169449|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	AK034013|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	AK134629|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	BC055804|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4
mm9_v1_chr1_-_195196423_195196475	20.6281	AUGGCUU	AF428262|Camk1g|215303|calcium/calmodulin-dependent protein kinase I gamma	BC021840|Camk1g|215303|calcium/calmodulin-dependent protein kinase I gamma	NM_144817|Camk1g|215303|calcium/calmodulin-dependent protein kinase I gamma
mm9_v1_chr2_+_65508501_65508501	20.3201	AUGGCUU	NM_001099298|Scn2a1|110876|sodium channel, voltage-gated, type II, alpha 1
mm9_v1_chr6_-_113841356_113841375	19.2916	AUGGCUU	DQ406822|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK051287|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	BC075643|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	NM_001036684|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2
mm9_v1_chr14_+_66963139_66963219	19.2618	AUGGCUU	BC014707|Stmn4|56471|stathmin-like 4	BC046752|Stmn4|56471|stathmin-like 4	NM_019675|Stmn4|56471|stathmin-like 4
mm9_v1_chr13_+_54472705_54472742	18.5139	AUGGCUU	NM_009946|Cplx2|12890|complexin 2
mm9_v1_chr6_-_113991945_113992108	18.4708	AUGGCUU	AK147240|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	DQ406821|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK147369|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK147501|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	NM_009723|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2
mm9_v1_chr5_-_38550627_38550759	18.1768	AUGGCUU	AF035683|Nsg1|18196|neuron specific gene family member 1	AK144503|Nsg1|18196|neuron specific gene family member 1	BC008272|Nsg1|18196|neuron specific gene family member 1	AK078054|Nsg1|18196|neuron specific gene family member 1	AK148941|Nsg1|18196|neuron specific gene family member 1	AX775765|Nsg1|18196|neuron specific gene family member 1	NM_010942|Nsg1|18196|neuron specific gene family member 1
mm9_v1_chr8_+_11728104_11728202	18.0381	AUGGCUU	NM_001113517|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK129064|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK139156|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)
mm9_v1_chr10_-_108447674_108447736	17.7131	AUGGCUU	BC042519|Syt1|20979|synaptotagmin I	NM_009306|Syt1|20979|synaptotagmin I
mm9_v1_chr4_-_86873866_86873867	17.5209	AUGGCUU	NM_001110240|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC115867|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC116637|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr10_+_7309565_7309776	16.6186	AUGGCUU	AK048919|Lrp11|237253|low density lipoprotein receptor-related protein 11	NM_172784|Lrp11|237253|low density lipoprotein receptor-related protein 11	AK036676|Lrp11|237253|low density lipoprotein receptor-related protein 11	AK050544|Lrp11|237253|low density lipoprotein receptor-related protein 11	AK031994|Lrp11|237253|low density lipoprotein receptor-related protein 11	BC059874|Lrp11|237253|low density lipoprotein receptor-related protein 11
mm9_v1_chr8_-_126384108_126384108	16.5202	AUGGCUU	BC036300|1700054N08Rik|73420|RIKEN cDNA 1700054N08 gene	NM_028536|1700054N08Rik|73420|RIKEN cDNA 1700054N08 gene
mm9_v1_chrX_-_72823345_72823551	16.4106	AUGGCUU	AB232636|Rab39b|67790|RAB39B, member RAS oncogene family	BC052472|Rab39b|67790|RAB39B, member RAS oncogene family	AK039013|Rab39b|67790|RAB39B, member RAS oncogene family	AK048981|Rab39b|67790|RAB39B, member RAS oncogene family	AK160737|Rab39b|67790|RAB39B, member RAS oncogene family	NM_175122|Rab39b|67790|RAB39B, member RAS oncogene family	AK018257|Rab39b|67790|RAB39B, member RAS oncogene family	AK020665|Rab39b|67790|RAB39B, member RAS oncogene family
mm9_v1_chr13_+_118391126_118391233	16.0736	AUGGCUU	AK158322|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1	NM_010408|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1
mm9_v1_chr11_-_119409041_119409133	15.3635	AUGGCUU	BC139018|Nptx1|18164|neuronal pentraxin 1	BC139020|Nptx1|18164|neuronal pentraxin 1	BC093479|Nptx1|18164|neuronal pentraxin 1	NM_008730|Nptx1|18164|neuronal pentraxin 1
mm9_v1_chr5_+_25265761_25265876	14.6221	AUGGCUU	BC053106|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	BC082279|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	NM_001004365|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	AK144936|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	AK035798|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)
mm9_v1_chr13_-_52626065_52626204	14.0395	AUGGCUU	AK136096|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	AK136101|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	NM_001024474|Diras2|68203|DIRAS family, GTP-binding RAS-like 2
mm9_v1_chr2_-_77654669_77654872	14.015	AUGGCUU	AK079322|Zfp385b|241494|zinc finger protein 385B	AK149352|Zfp385b|241494|zinc finger protein 385B	AK046798|Zfp385b|241494|zinc finger protein 385B	NM_178723|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chrX_+_38754480_38754557	13.786	AUGGCUU	NM_016886|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	BC086678|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr5_+_113919352_113919613	13.5966	AUGGCUU	BC096526|Wscd2|320916|WSC domain containing 2	NM_177292|Wscd2|320916|WSC domain containing 2
mm9_v1_chr13_-_58009653_58009693	13.4834	AUGGCUU	AK049019|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	AK039058|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	X92864|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	AK036189|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166463|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166464|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166465|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166466|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_009262|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
mm9_v1_chr5_-_68238654_68238670	12.8067	AUGGCUU	DQ503480|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK151709|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503479|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_001038999|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_009727|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503477|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr18_-_43847367_43847426	12.7831	AUGGCUU	AK133750|Jakmip2|76217|janus kinase and microtubule interacting protein 2	NM_001163637|Jakmip2|76217|janus kinase and microtubule interacting protein 2
mm9_v1_chr5_+_130845319_130845359	12.2015	AUGGCUU	NM_181045|Caln1|140904|calneuron 1	AF282251|Caln1|140904|calneuron 1	AK035865|Caln1|140904|calneuron 1
mm9_v1_chr2_-_77541328_77541435	12.0578	AUGGCUU	BC048543|Zfp385b|241494|zinc finger protein 385B	NM_001113399|Zfp385b|241494|zinc finger protein 385B	AK047859|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr1_-_21952022_21952022	11.7854	AUGGCUU	AK147264|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5	NM_001160139|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5	NM_023872|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5
mm9_v1_chr13_+_41345120_41345273	11.7757	AUGGCUU	NM_001135577|BC024659|108934|cDNA sequence BC024659	BC066054|BC024659|108934|cDNA sequence BC024659	BC094222|BC024659|108934|cDNA sequence BC024659
mm9_v1_chr8_-_70342105_70342226	11.7201	AUGGCUU	BC131913|Psd3|234353|pleckstrin and Sec7 domain containing 3	BC145641|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK031477|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK147606|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_027626|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr7_-_28231535_28231646	11.69	AUGGCUU	AK006254|Spnb4|80297|spectrin beta 4	AB055618|Spnb4|80297|spectrin beta 4	NM_032610|Spnb4|80297|spectrin beta 4	AK147558|Spnb4|80297|spectrin beta 4
mm9_v1_chr4_-_11893500_11893609	11.6372	AUGGCUU	AK133542|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1	AK137550|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1	NM_001033453|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1	NM_001098230|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1
mm9_v1_chr8_-_74195650_74195661	11.5616	AUGGCUU	NM_001029873|Unc13a|382018|unc-13 homolog A (C. elegans)	AK035920|Unc13a|382018|unc-13 homolog A (C. elegans)
mm9_v1_chr3_-_109946355_109946392	11.3488	AUGGCUU	BC079881|Ntng1|80883|netrin G1	NM_001163348|Ntng1|80883|netrin G1	NM_001163349|Ntng1|80883|netrin G1	NM_001163350|Ntng1|80883|netrin G1	NM_001163351|Ntng1|80883|netrin G1	NM_030699|Ntng1|80883|netrin G1	NM_133488|Ntng1|80883|netrin G1	AK134467|Ntng1|80883|netrin G1
mm9_v1_chr5_+_130924661_130924722	11.1985	AUGGCUU	NM_021371|Caln1|140904|calneuron 1	AB041539|Caln1|140904|calneuron 1	BC057129|Caln1|140904|calneuron 1	BC058963|Caln1|140904|calneuron 1	AK158892|Caln1|140904|calneuron 1
mm9_v1_chr9_+_109834266_109834307	11.1981	AUGGCUU	NM_008633|Mtap4|17758|microtubule-associated protein 4	AK046825|Mtap4|17758|microtubule-associated protein 4
mm9_v1_chr7_-_149276174_149276174	10.9627	AUGGCUU	NM_008748|Dusp8|18218|dual specificity phosphatase 8	X95518|Dusp8|18218|dual specificity phosphatase 8
mm9_v1_chr17_+_25945986_25946050	10.7826	AUGGCUU	NM_001164225|Fbxl16|214931|F-box and leucine-rich repeat protein 16
mm9_v1_chr7_+_98239230_98239295	10.7322	AUGGCUU	NM_011807|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr7_+_30088984_30089023	10.5542	AUGGCUU	BC052348|Dpf1|29861|D4, zinc and double PHD fingers family 1	NM_013874|Dpf1|29861|D4, zinc and double PHD fingers family 1	U48238|Dpf1|29861|D4, zinc and double PHD fingers family 1
mm9_v1_chr1_+_168184269_168184413	10.5277	AUGGCUU	NM_001164528|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024494|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024495|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024496|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024497|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024498|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024499|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024500|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024501|Ildr2|100039795|immunoglobulin-like domain containing receptor 2
mm9_v1_chr14_+_28435613_28435695	10.4044	AUGGCUU	AK147213|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	BC056760|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	NM_177814|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	AK032385|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2
mm9_v1_chr9_+_59598963_59599005	10.3366	AUGGCUU	NM_173018|Myo9a|270163|myosin IXa	AK048681|Myo9a|270163|myosin IXa
mm9_v1_chr15_-_74502981_74503002	10.2295	AUGGCUU	AF162777|Arc|11838|activity regulated cytoskeletal-associated protein	BC023127|Arc|11838|activity regulated cytoskeletal-associated protein	AK170446|Arc|11838|activity regulated cytoskeletal-associated protein	AK157822|Arc|11838|activity regulated cytoskeletal-associated protein	NM_018790|Arc|11838|activity regulated cytoskeletal-associated protein
mm9_v1_chr2_-_79969095_79969127	10.0245	AUGGCUU	BC090628|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AK043647|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_016744|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chrX_+_90920450_90920749	9.99777	AUGGCUU	NM_211138|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	BC048917|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189949|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK032027|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chrX_+_90900201_90900217	9.8923	AUGGCUU	AK149304|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189950|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	NM_177546|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK053577|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chr4_-_25727109_25727390	9.82723	AUGGCUU	AK049122|Fut9|14348|fucosyltransferase 9	NM_010243|Fut9|14348|fucosyltransferase 9	AK032177|Fut9|14348|fucosyltransferase 9	AK139133|Fut9|14348|fucosyltransferase 9	AK033607|Fut9|14348|fucosyltransferase 9
mm9_v1_chr3_-_80717517_80717574	9.82601	AUGGCUU	BC027094|Glrb|14658|glycine receptor, beta subunit	BC037605|Glrb|14658|glycine receptor, beta subunit	NM_010298|Glrb|14658|glycine receptor, beta subunit
mm9_v1_chr5_-_124778459_124778459	9.77081	AUGGCUU	NM_001081323|Mphosph9|269702|M-phase phosphoprotein 9
mm9_v1_chr4_-_107973683_107973743	9.72527	AUGGCUU	AK166278|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK148335|Zyg11b|414872|zyg-ll homolog B (C. elegans)	NM_001033634|Zyg11b|414872|zyg-ll homolog B (C. elegans)
mm9_v1_chr18_+_23910833_23910892	9.63483	AUGGCUU	AK158570|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	NM_001162942|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK168834|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr7_+_25266986_25267120	9.63078	AUGGCUU	AK143204|Cadm4|260299|cell adhesion molecule 4	NM_153112|Cadm4|260299|cell adhesion molecule 4	AY059394|Cadm4|260299|cell adhesion molecule 4
mm9_v1_chr16_+_38089086_38089192	9.55108	AUGGCUU	AB066114|Gsk3b|56637|glycogen synthase kinase 3 beta	NM_019827|Gsk3b|56637|glycogen synthase kinase 3 beta	BC060743|Gsk3b|56637|glycogen synthase kinase 3 beta
mm9_v1_chr18_+_23912225_23912225	9.41981	AUGGCUU	AK028823|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	NM_001162941|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr9_+_44925922_44925963	9.32412	AUGGCUU	NM_001014761|Scn2b|72821|sodium channel, voltage-gated, type II, beta	AB118947|Scn2b|72821|sodium channel, voltage-gated, type II, beta	BC092225|Scn2b|72821|sodium channel, voltage-gated, type II, beta
mm9_v1_chr13_-_96020120_96020284	9.30298	AUGGCUU	EF644173|Pde8b|218461|phosphodiesterase 8B	NM_172263|Pde8b|218461|phosphodiesterase 8B	BC032286|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr9_-_69989285_69989363	9.18117	AUGGCUU	AK038532|Fam81a|76886|family with sequence similarity 81, member A	AK079541|Fam81a|76886|family with sequence similarity 81, member A	AK018282|Fam81a|76886|family with sequence similarity 81, member A	AK044090|Fam81a|76886|family with sequence similarity 81, member A	NM_029784|Fam81a|76886|family with sequence similarity 81, member A
mm9_v1_chr3_+_115711207_115711327	9.07384	AUGGCUU	NM_001163514|Extl2|58193|exostoses (multiple)-like 2	AF200973|Extl2|58193|exostoses (multiple)-like 2	AK019370|Extl2|58193|exostoses (multiple)-like 2
mm9_v1_chr11_+_68902025_68902081	8.95044	AUGGCUU	BC055105|Vamp2|22318|vesicle-associated membrane protein 2	NM_009497|Vamp2|22318|vesicle-associated membrane protein 2	BC039745|Vamp2|22318|vesicle-associated membrane protein 2	U60150|Vamp2|22318|vesicle-associated membrane protein 2
mm9_v1_chr6_-_18464792_18464824	8.90792	AUGGCUU	AK028980|Cttnbp2|30785|cortactin binding protein 2	AK019384|Cttnbp2|30785|cortactin binding protein 2	BC141407|Cttnbp2|30785|cortactin binding protein 2	NM_080285|Cttnbp2|30785|cortactin binding protein 2
mm9_v1_chr7_-_116651647_116651647	8.80441	AUGGCUU	AY572454|Trim66|330627|tripartite motif-containing 66	AY572455|Trim66|330627|tripartite motif-containing 66	NM_001170912|Trim66|330627|tripartite motif-containing 66	NM_181853|Trim66|330627|tripartite motif-containing 66
mm9_v1_chr2_-_77357674_77357722	8.80258	AUGGCUU	AK078551|Zfp385b|241494|zinc finger protein 385B	AK050293|Zfp385b|241494|zinc finger protein 385B	NM_001113400|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr13_-_41315751_41315817	8.78555	AUGGCUU	AK029855|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	BC098215|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	AF170908|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	NM_019423|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	AK044770|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	AK050397|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
mm9_v1_chr9_-_99336923_99337150	8.48885	AUGGCUU	AK050469|Mras|17532|muscle and microspikes RAS	AB004879|Mras|17532|muscle and microspikes RAS	NM_008624|Mras|17532|muscle and microspikes RAS
mm9_v1_chr11_+_6963421_6963491	8.40145	AUGGCUU	NM_009622|Adcy1|432530|adenylate cyclase 1
mm9_v1_chr15_-_11925724_11925789	8.27198	AUGGCUU	J03750|Sub1|20024|SUB1 homolog (S. cerevisiae)	BC010967|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK146335|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK154114|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK049260|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK132021|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK151734|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK048371|Sub1|20024|SUB1 homolog (S. cerevisiae)	NM_011294|Sub1|20024|SUB1 homolog (S. cerevisiae)
mm9_v1_chr1_-_159342713_159342735	8.23329	AUGGCUU	AK039584|Rasal2|226525|RAS protein activator like 2	NM_177644|Rasal2|226525|RAS protein activator like 2
mm9_v1_chr3_+_115710360_115710449	8.21995	AUGGCUU	NM_001163515|Extl2|58193|exostoses (multiple)-like 2	NM_021388|Extl2|58193|exostoses (multiple)-like 2	AK159281|Extl2|58193|exostoses (multiple)-like 2	AK028677|Extl2|58193|exostoses (multiple)-like 2	AK161866|Extl2|58193|exostoses (multiple)-like 2	BC031438|Extl2|58193|exostoses (multiple)-like 2
mm9_v1_chr1_+_37356722_37356738	8.17906	AUGGCUU	AK162581|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	NM_030266|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I
mm9_v1_chr2_+_163264188_163264268	7.98878	AUGGCUU	NM_144891|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1	AK164991|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1	AK140488|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1	AK141371|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1	BC019941|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1
mm9_v1_chr9_+_8544141_8544270	7.94392	AUGGCUU	NM_013838|Trpc6|22068|transient receptor potential cation channel, subfamily C, member 6	U49069|Trpc6|22068|transient receptor potential cation channel, subfamily C, member 6	AK086446|Trpc6|22068|transient receptor potential cation channel, subfamily C, member 6	BC067391|Trpc6|22068|transient receptor potential cation channel, subfamily C, member 6	BC068310|Trpc6|22068|transient receptor potential cation channel, subfamily C, member 6	AK133864|Trpc6|22068|transient receptor potential cation channel, subfamily C, member 6	BC141131|Trpc6|22068|transient receptor potential cation channel, subfamily C, member 6
mm9_v1_chr2_-_136213509_136213702	7.85692	AUGGCUU	AK163530|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK032593|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK079080|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK013814|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	BC099417|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK077967|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	NM_172858|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7
mm9_v1_chrX_+_7455387_7455511	7.78738	AUGGCUU	AK043570|Pim2|18715|proviral integration site 2	L41495|Pim2|18715|proviral integration site 2	NM_138606|Pim2|18715|proviral integration site 2	BC027376|Pim2|18715|proviral integration site 2
mm9_v1_chr8_-_128422192_128422192	7.7755	AUGGCUU	BC068235|Pcnxl2|270109|pecanex-like 2 (Drosophila)	NM_175561|Pcnxl2|270109|pecanex-like 2 (Drosophila)
mm9_v1_chr18_+_64414012_64414029	7.76493	AUGGCUU	AK161482|St8sia3|20451|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	NM_009182|St8sia3|20451|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	AK015874|St8sia3|20451|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
mm9_v1_chr18_+_23962468_23962588	7.71522	AUGGCUU	NM_153058|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK038562|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK140595|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK040767|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK045904|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK148954|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK046221|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC027056|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC035254|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC025804|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK050527|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK148480|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK046095|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK088734|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC028987|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK045493|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr12_+_30213224_30213265	7.63316	AUGGCUU	AK012660|Myt1l|17933|myelin transcription factor 1-like	AK139366|Myt1l|17933|myelin transcription factor 1-like	NM_001093775|Myt1l|17933|myelin transcription factor 1-like	NM_001093778|Myt1l|17933|myelin transcription factor 1-like	NM_008666|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr17_+_93598761_93598761	7.57988	AUGGCUU	BC057344|Adcyap1|11516|adenylate cyclase activating polypeptide 1	NM_009625|Adcyap1|11516|adenylate cyclase activating polypeptide 1
mm9_v1_chr4_-_11892848_11892892	7.48277	AUGGCUU	BC048372|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1	NM_001098231|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1
mm9_v1_chr7_+_127821093_127821157	7.41485	AUGGCUU	NM_001164580|BC030336|233812|cDNA sequence BC030336
mm9_v1_chr3_-_55987612_55987634	7.34084	AUGGCUU	NM_030595|Nbea|26422|neurobeachin	Y18276|Nbea|26422|neurobeachin
mm9_v1_chr6_+_55401971_55401981	7.32933	AUGGCUU	AK083108|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	NM_001025372|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	NM_007407|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	AK042820|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1
mm9_v1_chr16_-_34514112_34514198	7.1753	AUGGCUU	BC157950|Kalrn|545156|kalirin, RhoGEF kinase	BC172101|Kalrn|545156|kalirin, RhoGEF kinase	NM_001164268|Kalrn|545156|kalirin, RhoGEF kinase	NM_177357|Kalrn|545156|kalirin, RhoGEF kinase	AK147314|Kalrn|545156|kalirin, RhoGEF kinase	AK147518|Kalrn|545156|kalirin, RhoGEF kinase
mm9_v1_chr6_+_107479719_107479841	7.12818	AUGGCUU	AK139965|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK139355|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK164849|Lrrn1|16979|leucine rich repeat protein 1, neuronal	D45913|Lrrn1|16979|leucine rich repeat protein 1, neuronal	NM_008516|Lrrn1|16979|leucine rich repeat protein 1, neuronal	BC058701|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK160841|Lrrn1|16979|leucine rich repeat protein 1, neuronal
mm9_v1_chr8_-_88214871_88214907	7.10454	AUGGCUU	AY138991|Neto2|74513|neuropilin (NRP) and tolloid (TLL)-like 2	BC068168|Neto2|74513|neuropilin (NRP) and tolloid (TLL)-like 2	NM_001081324|Neto2|74513|neuropilin (NRP) and tolloid (TLL)-like 2
mm9_v1_chr12_+_30219769_30219800	7.082	AUGGCUU	AK036205|Myt1l|17933|myelin transcription factor 1-like	NM_001093776|Myt1l|17933|myelin transcription factor 1-like	BC079651|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr15_-_43002356_43002397	7.05172	AUGGCUU	AK087485|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	NM_172815|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK052457|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK049891|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)
mm9_v1_chr10_+_69388242_69388279	6.86818	AUGGCUU	L40631|Ank3|11735|ankyrin 3, epithelial	NM_009670|Ank3|11735|ankyrin 3, epithelial	NM_170687|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr7_-_4796261_4796301	6.85867	AUGGCUU	NM_172737|Shisa7|232813|shisa homolog 7 (Xenopus laevis)
mm9_v1_chr1_-_173126368_173126402	6.8585	AUGGCUU	AK032164|Pcp4l1|66425|Purkinje cell protein 4-like 1	AK075738|Pcp4l1|66425|Purkinje cell protein 4-like 1	AK002772|Pcp4l1|66425|Purkinje cell protein 4-like 1	AY304481|Pcp4l1|66425|Purkinje cell protein 4-like 1	NM_025557|Pcp4l1|66425|Purkinje cell protein 4-like 1
mm9_v1_chr5_+_73872293_73872293	6.81705	AUGGCUU	AK076991|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_001190734|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr8_-_70434808_70434844	6.77489	AUGGCUU	BC052365|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK161498|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_030263|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr18_+_23573908_23573935	6.73389	AUGGCUU	NM_010087|Dtna|13527|dystrobrevin alpha	NM_207650|Dtna|13527|dystrobrevin alpha
mm9_v1_chr9_+_45646611_45646685	6.59965	AUGGCUU	NM_001145947|Bace1|23821|beta-site APP cleaving enzyme 1	NM_011792|Bace1|23821|beta-site APP cleaving enzyme 1	AK033112|Bace1|23821|beta-site APP cleaving enzyme 1	AK041285|Bace1|23821|beta-site APP cleaving enzyme 1	AK080498|Bace1|23821|beta-site APP cleaving enzyme 1	AK082317|Bace1|23821|beta-site APP cleaving enzyme 1	AK163583|Bace1|23821|beta-site APP cleaving enzyme 1	AK046175|Bace1|23821|beta-site APP cleaving enzyme 1	AK082230|Bace1|23821|beta-site APP cleaving enzyme 1	AK049626|Bace1|23821|beta-site APP cleaving enzyme 1	AF190726|Bace1|23821|beta-site APP cleaving enzyme 1	AK014464|Bace1|23821|beta-site APP cleaving enzyme 1	BC048189|Bace1|23821|beta-site APP cleaving enzyme 1
mm9_v1_chr10_+_68996455_68996596	6.5051	AUGGCUU	NM_146005|Ank3|11735|ankyrin 3, epithelial	NM_170688|Ank3|11735|ankyrin 3, epithelial	NM_170689|Ank3|11735|ankyrin 3, epithelial	NM_170690|Ank3|11735|ankyrin 3, epithelial	NM_170728|Ank3|11735|ankyrin 3, epithelial	NM_170729|Ank3|11735|ankyrin 3, epithelial	NM_170730|Ank3|11735|ankyrin 3, epithelial	AK162547|Ank3|11735|ankyrin 3, epithelial	AK042330|Ank3|11735|ankyrin 3, epithelial	BC021657|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr7_+_51639464_51639527	6.40651	AUGGCUU	NM_001114116|Syt3|20981|synaptotagmin III	NM_016663|Syt3|20981|synaptotagmin III
mm9_v1_chr12_-_86311718_86311851	6.3596	AUGGCUU	BC057351|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	BC079590|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK147878|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK154529|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK147491|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	NM_178065|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene
mm9_v1_chr10_+_82448214_82448242	6.28648	AUGGCUU	NM_021439|Chst11|58250|carbohydrate sulfotransferase 11	AJ289133|Chst11|58250|carbohydrate sulfotransferase 11
mm9_v1_chr1_+_136543253_136543257	6.23249	AUGGCUU	AB036514|Syt2|20980|synaptotagmin II	AK036357|Syt2|20980|synaptotagmin II	NM_009307|Syt2|20980|synaptotagmin II
mm9_v1_chr19_+_17030600_17030608	6.22153	AUGGCUU	AK165582|Prune2|353211|prune homolog 2 (Drosophila)	AK020727|Prune2|353211|prune homolog 2 (Drosophila)	AK039241|Prune2|353211|prune homolog 2 (Drosophila)	AK165913|Prune2|353211|prune homolog 2 (Drosophila)	NM_181348|Prune2|353211|prune homolog 2 (Drosophila)
mm9_v1_chr5_+_73882264_73882364	6.22138	AUGGCUU	NM_001190733|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_178896|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	AK033559|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137627|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137628|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC144794|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC060213|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC108346|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr5_-_103640272_103640352	6.17219	AUGGCUU	AK036275|Mapk10|26414|mitogen-activated protein kinase 10	BC046625|Mapk10|26414|mitogen-activated protein kinase 10	AK163206|Mapk10|26414|mitogen-activated protein kinase 10	AK076990|Mapk10|26414|mitogen-activated protein kinase 10	BC026697|Mapk10|26414|mitogen-activated protein kinase 10	AK082242|Mapk10|26414|mitogen-activated protein kinase 10	NM_001081567|Mapk10|26414|mitogen-activated protein kinase 10	NM_009158|Mapk10|26414|mitogen-activated protein kinase 10
mm9_v1_chr3_-_84024766_84024812	6.15359	AUGGCUU	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr19_+_38339167_38339370	6.1213	AUGGCUU	AK045443|Lgi1|56839|leucine-rich repeat LGI family, member 1	BC066090|Lgi1|56839|leucine-rich repeat LGI family, member 1	NM_020278|Lgi1|56839|leucine-rich repeat LGI family, member 1	AF246818|Lgi1|56839|leucine-rich repeat LGI family, member 1	AK035873|Lgi1|56839|leucine-rich repeat LGI family, member 1	AK031996|Lgi1|56839|leucine-rich repeat LGI family, member 1
mm9_v1_chr11_+_67399999_67400271	6.06739	AUGGCUU	AK031455|Gas7|14457|growth arrest specific 7	NM_001109657|Gas7|14457|growth arrest specific 7	AK154463|Gas7|14457|growth arrest specific 7	AK017394|Gas7|14457|growth arrest specific 7
mm9_v1_chr1_-_166388431_166388540	6.02414	AUGGCUU	AK010677|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	NM_009721|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr18_+_7869164_7869355	5.82687	AUGGCUU	NM_001146298|Wac|225131|WW domain containing adaptor with coiled-coil	NM_153085|Wac|225131|WW domain containing adaptor with coiled-coil	BC080851|Wac|225131|WW domain containing adaptor with coiled-coil
mm9_v1_chr8_+_84239098_84239098	5.75997	AUGGCUU	BC064813|Inpp4b|234515|inositol polyphosphate-4-phosphatase, type II	NM_001024617|Inpp4b|234515|inositol polyphosphate-4-phosphatase, type II
mm9_v1_chr10_-_88720534_88720534	5.67261	AUGGCUU	BC065114|Ano4|320091|anoctamin 4	NM_178773|Ano4|320091|anoctamin 4
mm9_v1_chr13_-_95992994_95993009	5.63602	AUGGCUU	AK043680|Pde8b|218461|phosphodiesterase 8B	AK045991|Pde8b|218461|phosphodiesterase 8B	NM_001170669|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr3_+_157197301_157197382	5.54712	AUGGCUU	AK150291|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK152536|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK168613|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK167862|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK167983|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK167766|Zranb2|53861|zinc finger, RAN-binding domain containing 2	BC049115|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK168162|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK169335|Zranb2|53861|zinc finger, RAN-binding domain containing 2	NM_017381|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK146275|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK160862|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK167756|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK168033|Zranb2|53861|zinc finger, RAN-binding domain containing 2	BC132547|Zranb2|53861|zinc finger, RAN-binding domain containing 2	BC138575|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK166534|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK169114|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK146854|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AF133818|Zranb2|53861|zinc finger, RAN-binding domain containing 2
mm9_v1_chr4_-_83132289_83132381	5.37677	AUGGCUU	BC043079|Psip1|101739|PC4 and SFRS1 interacting protein 1	NM_133948|Psip1|101739|PC4 and SFRS1 interacting protein 1	BC002104|Psip1|101739|PC4 and SFRS1 interacting protein 1	AK161426|Psip1|101739|PC4 and SFRS1 interacting protein 1	AK011572|Psip1|101739|PC4 and SFRS1 interacting protein 1	BC052177|Psip1|101739|PC4 and SFRS1 interacting protein 1
mm9_v1_chrX_+_162782484_162782852	5.28776	AUGGCUU	NM_001177955|Gpm6b|14758|glycoprotein m6b	NM_001177956|Gpm6b|14758|glycoprotein m6b	NM_001177957|Gpm6b|14758|glycoprotein m6b	NM_001177958|Gpm6b|14758|glycoprotein m6b	NM_001177959|Gpm6b|14758|glycoprotein m6b	NM_001177960|Gpm6b|14758|glycoprotein m6b	AF254869|Gpm6b|14758|glycoprotein m6b	AF254870|Gpm6b|14758|glycoprotein m6b	AF254872|Gpm6b|14758|glycoprotein m6b	AF254873|Gpm6b|14758|glycoprotein m6b	AF254874|Gpm6b|14758|glycoprotein m6b	AF254875|Gpm6b|14758|glycoprotein m6b	AF254878|Gpm6b|14758|glycoprotein m6b	AF254879|Gpm6b|14758|glycoprotein m6b	AK013660|Gpm6b|14758|glycoprotein m6b	AK140714|Gpm6b|14758|glycoprotein m6b	S65737|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr2_+_112106470_112106612	5.2822	AUGGCUU	BC062099|Slc12a6|107723|solute carrier family 12, member 6	NM_133649|Slc12a6|107723|solute carrier family 12, member 6
mm9_v1_chrX_+_162676870_162676901	5.21183	AUGGCUU	NM_001177961|Gpm6b|14758|glycoprotein m6b	NM_001177962|Gpm6b|14758|glycoprotein m6b	NM_023122|Gpm6b|14758|glycoprotein m6b	AK132778|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr7_-_120512849_120512864	5.13712	AUGGCUU	BC050781|Btbd10|68815|BTB (POZ) domain containing 10	NM_133700|Btbd10|68815|BTB (POZ) domain containing 10
mm9_v1_chr1_+_9591347_9591354	5.10131	AUGGCUU	AK043759|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene	NM_178399|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene
mm9_v1_chr13_+_83643032_83643032	5.0539	AUGGCUU	NM_001170537|Mef2c|17260|myocyte enhancer factor 2C	NM_025282|Mef2c|17260|myocyte enhancer factor 2C
mm9_v1_chr4_+_21858472_21858503	5.04117	AUGGCUU	AK144924|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	NM_175234|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK081616|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK082464|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK018081|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene
mm9_v1_chr10_-_80306743_80306828	5.04007	AUGGCUU	BC072620|Lingo3|237403|leucine rich repeat and Ig domain containing 3	NM_001013758|Lingo3|237403|leucine rich repeat and Ig domain containing 3
mm9_v1_chr2_-_37502738_37502804	5.03908	AUGGCUU	X84692|Strbp|20744|spermatid perinuclear RNA binding protein	NM_009261|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr6_-_126690651_126690691	5.02647	AUGGCUU	NM_013568|Kcna6|16494|potassium voltage-gated channel, shaker-related, subfamily, member 6
mm9_v1_chr9_+_53345151_53345154	5.02405	AUGGCUU	AK080294|Npat|244879|nuclear protein in the AT region	NM_001081152|Npat|244879|nuclear protein in the AT region
mm9_v1_chr15_-_81846328_81846578	5.01297	AUGGCUU	AK189878|Pppde2|28075|PPPDE peptidase domain containing 2	BC071205|Pppde2|28075|PPPDE peptidase domain containing 2	BC131979|Pppde2|28075|PPPDE peptidase domain containing 2	BC132642|Pppde2|28075|PPPDE peptidase domain containing 2	BC145235|Pppde2|28075|PPPDE peptidase domain containing 2	AK016347|Pppde2|28075|PPPDE peptidase domain containing 2	AK131703|Pppde2|28075|PPPDE peptidase domain containing 2	AK005963|Pppde2|28075|PPPDE peptidase domain containing 2	AK005706|Pppde2|28075|PPPDE peptidase domain containing 2	BC056972|Pppde2|28075|PPPDE peptidase domain containing 2	NM_134095|Pppde2|28075|PPPDE peptidase domain containing 2
mm9_v1_chr4_-_124539414_124539476	4.91388	AUGGCUU	BC065047|Maneal|215090|mannosidase, endo-alpha-like	NM_001007573|Maneal|215090|mannosidase, endo-alpha-like
mm9_v1_chr7_-_116637251_116637251	4.8678	AUGGCUU	AK147559|Trim66|330627|tripartite motif-containing 66	NM_001170913|Trim66|330627|tripartite motif-containing 66
mm9_v1_chr10_-_85961630_85961659	4.86097	AUGGCUU	AK043854|Syn3|27204|synapsin III	AK087342|Syn3|27204|synapsin III	NM_001164495|Syn3|27204|synapsin III	NM_013722|Syn3|27204|synapsin III
mm9_v1_chr8_-_73300496_73300620	4.80636	AUGGCUU	BC085501|Pik3r2|18709|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)	Y13569|Pik3r2|18709|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)	BC006796|Pik3r2|18709|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)	AK146195|Pik3r2|18709|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)	AK148122|Pik3r2|18709|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)	NM_008841|Pik3r2|18709|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)
mm9_v1_chr6_-_126595818_126595818	4.78794	AUGGCUU	NM_010595|Kcna1|16485|potassium voltage-gated channel, shaker-related subfamily, member 1
mm9_v1_chr14_-_31304341_31304341	4.7239	AUGGCUU	AJ437292|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit	NM_028981|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm9_v1_chr4_+_125168074_125168079	4.65139	AUGGCUU	NM_001081097|Grik3|14807|glutamate receptor, ionotropic, kainate 3	BC118004|Grik3|14807|glutamate receptor, ionotropic, kainate 3
mm9_v1_chr17_+_29169579_29169604	4.54919	AUGGCUU	NM_013663|Srsf3|20383|serine/arginine-rich splicing factor 3
mm9_v1_chr1_-_172519932_172519981	4.52109	AUGGCUU	AK045124|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	AK018149|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	AK053892|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	NM_001109985|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein
mm9_v1_chr2_+_112124767_112124844	4.50074	AUGGCUU	AF211855|Slc12a6|107723|solute carrier family 12, member 6	NM_133648|Slc12a6|107723|solute carrier family 12, member 6
mm9_v1_chr14_-_48188088_48188108	4.31931	AUGGCUU	AK029330|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	AK029967|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	BC090995|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	AK054196|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	NM_172599|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)
mm9_v1_chr10_+_110601745_110601988	4.16227	AUGGCUU	AK037158|Osbpl8|237542|oxysterol binding protein-like 8	AK050244|Osbpl8|237542|oxysterol binding protein-like 8	NM_001003717|Osbpl8|237542|oxysterol binding protein-like 8	NM_175489|Osbpl8|237542|oxysterol binding protein-like 8
mm9_v1_chr1_+_193542261_193542399	4.11969	AUGGCUU	NM_001134829|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	AK172914|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	BC013667|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1
mm9_v1_chr9_+_21001148_21001171	4.11889	AUGGCUU	NM_019798|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chr4_-_141346551_141346594	4.10851	AUGGCUU	AK051048|Dnajc16|214063|DnaJ (Hsp40) homolog, subfamily C, member 16	NM_172338|Dnajc16|214063|DnaJ (Hsp40) homolog, subfamily C, member 16	AK028692|Dnajc16|214063|DnaJ (Hsp40) homolog, subfamily C, member 16	AK164023|Dnajc16|214063|DnaJ (Hsp40) homolog, subfamily C, member 16	AK154946|Dnajc16|214063|DnaJ (Hsp40) homolog, subfamily C, member 16
mm9_v1_chr19_-_19185685_19185685	4.09269	AUGGCUU	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr11_+_69139759_69139835	4.06744	AUGGCUU	AK049316|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	AK083134|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	NM_010599|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	AK046194|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	AK031806|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	AK044102|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	BC017518|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3
mm9_v1_chr3_-_138738152_138738164	4.00201	AUGGCUU	AK158465|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	NM_001040690|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	NM_145544|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	AK172052|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1
mm9_v1_chr5_-_71233855_71233855	3.99899	AUGGCUU	AK034332|Gabrg1|14405|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	NM_010252|Gabrg1|14405|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1
mm9_v1_chr8_-_37312569_37312569	3.89542	AUGGCUU	NM_001081150|Lonrf1|244421|LON peptidase N-terminal domain and ring finger 1
mm9_v1_chr7_+_104728398_104728430	3.76771	AUGGCUU	AK134242|Rsf1|233532|remodeling and spacing factor 1	NM_001081267|Rsf1|233532|remodeling and spacing factor 1	AK138087|Rsf1|233532|remodeling and spacing factor 1	AK146675|Rsf1|233532|remodeling and spacing factor 1	BC085127|Rsf1|233532|remodeling and spacing factor 1	AK146154|Rsf1|233532|remodeling and spacing factor 1	AK032853|Rsf1|233532|remodeling and spacing factor 1
mm9_v1_chr1_+_193541845_193542002	3.74518	AUGGCUU	AK133814|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	NM_172266|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1
mm9_v1_chr4_-_76240202_76240202	3.72937	AUGGCUU	BC086654|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	NM_011211|Ptprd|19266|protein tyrosine phosphatase, receptor type, D
mm9_v1_chr3_-_10331334_10331440	3.69549	AUGGCUU	BC055722|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AF042730|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK160467|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK083238|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK145472|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK011770|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK160203|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK165977|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	BC049080|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK078406|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK152774|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK147778|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK153457|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK168457|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	NM_018864|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1
mm9_v1_chr5_+_144861227_144861325	3.69055	AUGGCUU	AK158724|Lmtk2|231876|lemur tyrosine kinase 2	NM_001081109|Lmtk2|231876|lemur tyrosine kinase 2
mm9_v1_chr3_-_119486305_119486325	3.62622	AUGGCUU	AK135738|Ptbp2|56195|polypyrimidine tract binding protein 2	NM_019550|Ptbp2|56195|polypyrimidine tract binding protein 2
mm9_v1_chr7_-_71083734_71083823	3.5307	AUGGCUU	AJ245644|Klf13|50794|Kruppel-like factor 13	AJ275987|Klf13|50794|Kruppel-like factor 13	BC051557|Klf13|50794|Kruppel-like factor 13	AK155298|Klf13|50794|Kruppel-like factor 13	AF251796|Klf13|50794|Kruppel-like factor 13	NM_021366|Klf13|50794|Kruppel-like factor 13
mm9_v1_chr3_+_88420105_88420182	3.39778	AUGGCUU	NM_001198911|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AK144972|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr1_+_120285634_120285634	3.39557	AUGGCUU	AK042402|Clasp1|76707|CLIP associating protein 1	NM_001081276|Clasp1|76707|CLIP associating protein 1	NM_029709|Clasp1|76707|CLIP associating protein 1	NM_177548|Clasp1|76707|CLIP associating protein 1
mm9_v1_chr11_+_67346499_67346579	3.36683	AUGGCUU	NM_008088|Gas7|14457|growth arrest specific 7	BC120528|Gas7|14457|growth arrest specific 7	BC120530|Gas7|14457|growth arrest specific 7
mm9_v1_chrX_-_147531030_147531085	3.26257	AUGGCUU	BC037444|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC025008|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	AK044504|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC049668|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_001164578|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_175146|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)
mm9_v1_chr4_-_75779379_75779379	3.25558	AUGGCUU	AF326559|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	AF326560|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	NM_001014288|Ptprd|19266|protein tyrosine phosphatase, receptor type, D
mm9_v1_chr8_-_70498472_70498472	3.23552	AUGGCUU	AB220685|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_177698|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr17_-_82137708_82137731	3.22362	AUGGCUU	AF004666|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_001112798|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_011406|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	U70033|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	AK084813|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene	AK085810|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene
mm9_v1_chrX_+_165233030_165233030	3.12869	AUGGCUU	AK164501|Arhgap6|11856|Rho GTPase activating protein 6	AK171677|Arhgap6|11856|Rho GTPase activating protein 6	NM_009707|Arhgap6|11856|Rho GTPase activating protein 6
mm9_v1_chr9_-_42924626_42924652	3.10305	AUGGCUU	AK128910|Tmem136|235300|transmembrane protein 136	BC139046|Tmem136|235300|transmembrane protein 136	BC139047|Tmem136|235300|transmembrane protein 136	AK158698|Tmem136|235300|transmembrane protein 136	NM_001034863|Tmem136|235300|transmembrane protein 136
mm9_v1_chr6_+_54631644_54631765	3.07862	AUGGCUU	BC042507|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	BC052467|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	AK019120|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	AK019128|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	AK043452|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	NM_026629|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene
mm9_v1_chr1_+_187028043_187028086	3.07099	AUGGCUU	NM_001163754|Rab3gap2|98732|RAB3 GTPase activating protein subunit 2	AK157509|Rab3gap2|98732|RAB3 GTPase activating protein subunit 2
mm9_v1_chr6_-_56312803_56312803	3.069	AUGGCUU	AK050499|Pde1c|18575|phosphodiesterase 1C	NM_001159960|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr9_-_108092712_108092716	3.05678	AUGGCUU	NM_007567|Bsn|12217|bassoon
mm9_v1_chr15_+_81296745_81296851	2.98806	AUGGCUU	NM_019712|Rbx1|56438|ring-box 1	AK004114|Rbx1|56438|ring-box 1	AK005127|Rbx1|56438|ring-box 1	AK003159|Rbx1|56438|ring-box 1	AF140599|Rbx1|56438|ring-box 1	AK152012|Rbx1|56438|ring-box 1	AK159571|Rbx1|56438|ring-box 1	BC027396|Rbx1|56438|ring-box 1	BC051473|Rbx1|56438|ring-box 1	BC056992|Rbx1|56438|ring-box 1	AK182752|Rbx1|56438|ring-box 1	AK183716|Rbx1|56438|ring-box 1
mm9_v1_chr11_-_107331865_107332065	2.98331	AUGGCUU	BC082333|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	BC108351|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AB077281|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK153625|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK171918|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK172137|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	NM_145823|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK171340|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1
mm9_v1_chr19_+_47303332_47303400	2.9821	AUGGCUU	NM_001163480|Neurl1a|18011|neuralized homolog 1A (Drosophila)	AF401228|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr17_+_50648736_50648932	2.89043	AUGGCUU	AB033615|Plcl2|224860|phospholipase C-like 2	NM_013880|Plcl2|224860|phospholipase C-like 2	AK165548|Plcl2|224860|phospholipase C-like 2	AK154288|Plcl2|224860|phospholipase C-like 2
mm9_v1_chr7_+_28964486_28964515	2.88916	AUGGCUU	BC019545|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	NM_001037957|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	NM_010092|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	Y18280|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm9_v1_chr3_+_88425294_88425344	2.87862	AUGGCUU	NM_001198912|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	NM_001198913|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr10_-_33344405_33344571	2.86464	AUGGCUU	AK039308|Clvs2|215890|clavesin 2	NM_175448|Clvs2|215890|clavesin 2	BC058539|Clvs2|215890|clavesin 2	AK163214|Clvs2|215890|clavesin 2	AK053797|Clvs2|215890|clavesin 2	AK139868|Clvs2|215890|clavesin 2	AK139409|Clvs2|215890|clavesin 2	AK169009|Clvs2|215890|clavesin 2
mm9_v1_chr18_-_61336629_61336741	2.83844	AUGGCUU	BC079580|Hmgxb3|106894|HMG box domain containing 3	AK088852|Hmgxb3|106894|HMG box domain containing 3	AK034086|Hmgxb3|106894|HMG box domain containing 3	AK041866|Hmgxb3|106894|HMG box domain containing 3	AK144993|Hmgxb3|106894|HMG box domain containing 3	NM_178277|Hmgxb3|106894|HMG box domain containing 3	AB045322|Hmgxb3|106894|HMG box domain containing 3	NM_134134|Hmgxb3|106894|HMG box domain containing 3
mm9_v1_chr2_+_75670230_75670233	2.82238	AUGGCUU	AK031049|Agps|228061|alkylglycerone phosphate synthase	NM_172666|Agps|228061|alkylglycerone phosphate synthase
mm9_v1_chr12_+_16901671_16901783	2.7421	AUGGCUU	NM_009072|Rock2|19878|Rho-associated coiled-coil containing protein kinase 2
mm9_v1_chr2_+_158235580_158235588	2.72353	AUGGCUU	NM_177658|Ralgapb|228850|Ral GTPase activating protein, beta subunit (non-catalytic)
mm9_v1_chr14_+_120877548_120877707	2.72242	AUGGCUU	AK140318|Rap2a|76108|RAS related protein 2a	BC067194|Rap2a|76108|RAS related protein 2a	BC049084|Rap2a|76108|RAS related protein 2a	BC053003|Rap2a|76108|RAS related protein 2a	NM_029519|Rap2a|76108|RAS related protein 2a	AK018024|Rap2a|76108|RAS related protein 2a
mm9_v1_chr5_-_124666426_124666426	2.67527	AUGGCUU	AF058693|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2	NM_011256|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2
mm9_v1_chr9_+_108710676_108710814	2.65008	AUGGCUU	BC064818|Nckipsd|80987|NCK interacting protein with SH3 domain	NM_030729|Nckipsd|80987|NCK interacting protein with SH3 domain	AK134725|Nckipsd|80987|NCK interacting protein with SH3 domain	AF130313|Nckipsd|80987|NCK interacting protein with SH3 domain
mm9_v1_chrX_+_148613496_148613589	2.59249	AUGGCUU	AK155453|Iqsec2|245666|IQ motif and Sec7 domain 2	NM_001005475|Iqsec2|245666|IQ motif and Sec7 domain 2
mm9_v1_chr10_+_126602182_126602286	2.57264	AUGGCUU	AK144484|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	BC057199|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	NM_008080|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	BC019969|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm9_v1_chr3_+_88425011_88425071	2.53758	AUGGCUU	NM_008487|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AK156379|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AF177032|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	U28495|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr7_+_19576593_19576667	2.4976	AUGGCUU	NM_145579|Mypop|232934|Myb-related transcription factor, partner of profilin	M82902|Mypop|232934|Myb-related transcription factor, partner of profilin	AF364868|Mypop|232934|Myb-related transcription factor, partner of profilin
mm9_v1_chr8_-_127187268_127187334	2.48828	AUGGCUU	BC058626|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	NM_175149|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene
mm9_v1_chr1_-_178737254_178737254	2.45088	AUGGCUU	NM_001099637|Cep170|545389|centrosomal protein 170
mm9_v1_chr8_-_17535279_17535384	2.41076	AUGGCUU	AY017475|Csmd1|94109|CUB and Sushi multiple domains 1	AK038679|Csmd1|94109|CUB and Sushi multiple domains 1	AK048698|Csmd1|94109|CUB and Sushi multiple domains 1	AK134585|Csmd1|94109|CUB and Sushi multiple domains 1	NM_053171|Csmd1|94109|CUB and Sushi multiple domains 1
mm9_v1_chr10_-_79017835_79017849	2.37864	AUGGCUU	BC067013|Mier2|70427|mesoderm induction early response 1, family member 2	NM_027422|Mier2|70427|mesoderm induction early response 1, family member 2	AK154672|Mier2|70427|mesoderm induction early response 1, family member 2
mm9_v1_chr9_+_44947045_44947124	2.35936	AUGGCUU	BC139399|Scn4b|399548|sodium channel, type IV, beta	BC139400|Scn4b|399548|sodium channel, type IV, beta	AY669079|Scn4b|399548|sodium channel, type IV, beta	NM_001013390|Scn4b|399548|sodium channel, type IV, beta
mm9_v1_chr19_+_27291507_27291624	2.33625	AUGGCUU	AK044683|Vldlr|22359|very low density lipoprotein receptor	AK076172|Vldlr|22359|very low density lipoprotein receptor	NM_001161420|Vldlr|22359|very low density lipoprotein receptor	NM_013703|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr17_-_66234198_66234307	2.28291	AUGGCUU	BC075732|Ralbp1|19765|ralA binding protein 1	NM_001198949|Ralbp1|19765|ralA binding protein 1
mm9_v1_chr5_-_49280703_49280795	2.26422	AUGGCUU	AF453243|Kcnip4|80334|Kv channel interacting protein 4	AK165773|Kcnip4|80334|Kv channel interacting protein 4	AK049662|Kcnip4|80334|Kv channel interacting protein 4	DQ148503|Kcnip4|80334|Kv channel interacting protein 4	AK039048|Kcnip4|80334|Kv channel interacting protein 4	NM_030265|Kcnip4|80334|Kv channel interacting protein 4
mm9_v1_chr1_-_168339909_168339980	2.25421	AUGGCUU	AK031716|Pogk|71592|pogo transposable element with KRAB domain	BC072587|Pogk|71592|pogo transposable element with KRAB domain	AK048067|Pogk|71592|pogo transposable element with KRAB domain	AK048752|Pogk|71592|pogo transposable element with KRAB domain	AK053898|Pogk|71592|pogo transposable element with KRAB domain	NM_001142948|Pogk|71592|pogo transposable element with KRAB domain	NM_175170|Pogk|71592|pogo transposable element with KRAB domain
mm9_v1_chr17_-_66235094_66235137	2.20144	AUGGCUU	NM_009067|Ralbp1|19765|ralA binding protein 1	AK138197|Ralbp1|19765|ralA binding protein 1
mm9_v1_chr15_-_103170514_103170552	2.13047	AUGGCUU	AF118566|Zfp385a|29813|zinc finger protein 385A	NM_013866|Zfp385a|29813|zinc finger protein 385A	AK137748|Zfp385a|29813|zinc finger protein 385A
mm9_v1_chr10_-_80039973_80040065	2.09559	AUGGCUU	BC137607|Klf16|118445|Kruppel-like factor 16	BC137609|Klf16|118445|Kruppel-like factor 16	AF283891|Klf16|118445|Kruppel-like factor 16	AK044577|Klf16|118445|Kruppel-like factor 16	NM_078477|Klf16|118445|Kruppel-like factor 16	AK154524|Klf16|118445|Kruppel-like factor 16
mm9_v1_chr19_+_42245036_42245077	2.0906	AUGGCUU	NM_001164531|Zfyve27|319740|zinc finger, FYVE domain containing 27	NM_177319|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr10_-_121023773_121023881	2.07717	AUGGCUU	AK083214|Tbk1|56480|TANK-binding kinase 1	AK004649|Tbk1|56480|TANK-binding kinase 1	AK168193|Tbk1|56480|TANK-binding kinase 1	NM_019786|Tbk1|56480|TANK-binding kinase 1
mm9_v1_chr7_+_51846254_51846289	2.06519	AUGGCUU	NM_008422|Kcnc3|16504|potassium voltage gated channel, Shaw-related subfamily, member 3
mm9_v1_chr6_-_35489875_35489887	2.0416	AUGGCUU	NM_008098|Mtpn|14489|myotrophin
mm9_v1_chr5_-_45190857_45190945	2.04124	AUGGCUU	U89487|Ldb2|16826|LIM domain binding 2	U89489|Ldb2|16826|LIM domain binding 2	BC079611|Ldb2|16826|LIM domain binding 2	AK147160|Ldb2|16826|LIM domain binding 2	AK146860|Ldb2|16826|LIM domain binding 2	NM_001077398|Ldb2|16826|LIM domain binding 2	NM_010698|Ldb2|16826|LIM domain binding 2
mm9_v1_chr6_-_148160895_148160895	1.99876	AUGGCUU	AK016275|Ergic2|67456|ERGIC and golgi 2	NM_026168|Ergic2|67456|ERGIC and golgi 2	NM_026355|Ergic2|67456|ERGIC and golgi 2
mm9_v1_chr19_-_19075535_19075606	1.9828	AUGGCUU	DQ779924|Rorb|225998|RAR-related orphan receptor beta	BC024768|Rorb|225998|RAR-related orphan receptor beta	AK044421|Rorb|225998|RAR-related orphan receptor beta	BC024842|Rorb|225998|RAR-related orphan receptor beta	NM_146095|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr6_-_56312170_56312512	1.98157	AUGGCUU	AK082497|Pde1c|18575|phosphodiesterase 1C	BC032277|Pde1c|18575|phosphodiesterase 1C	AK139923|Pde1c|18575|phosphodiesterase 1C	AK017183|Pde1c|18575|phosphodiesterase 1C	AK082180|Pde1c|18575|phosphodiesterase 1C	AK030423|Pde1c|18575|phosphodiesterase 1C	NM_001025568|Pde1c|18575|phosphodiesterase 1C	NM_001159952|Pde1c|18575|phosphodiesterase 1C	NM_001159953|Pde1c|18575|phosphodiesterase 1C	L76946|Pde1c|18575|phosphodiesterase 1C	NM_011054|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr10_+_126602820_126602972	1.92811	AUGGCUU	AK040324|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	NM_027739|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	AK086849|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	L25885|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	BC036996|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm9_v1_chr1_+_133904162_133904241	1.90712	AUGGCUU	NM_007923|Elk4|13714|ELK4, member of ETS oncogene family	AK156537|Elk4|13714|ELK4, member of ETS oncogene family
mm9_v1_chr12_-_27100112_27100136	1.86466	AUGGCUU	AF360998|Rnf144a|108089|ring finger protein 144A	NM_001081977|Rnf144a|108089|ring finger protein 144A	NM_080563|Rnf144a|108089|ring finger protein 144A
mm9_v1_chr12_-_109241423_109241623	1.85239	AUGGCUU	BC019503|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AF186019|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AK088219|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043551|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043553|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043583|Bcl11b|58208|B-cell leukemia/lymphoma 11B	NM_001079883|Bcl11b|58208|B-cell leukemia/lymphoma 11B	NM_021399|Bcl11b|58208|B-cell leukemia/lymphoma 11B
mm9_v1_chr11_-_66339627_66339627	1.85101	AUGGCUU	AK147504|Shisa6|380702|shisa homolog 6 (Xenopus laevis)	NM_001034874|Shisa6|380702|shisa homolog 6 (Xenopus laevis)
mm9_v1_chr2_-_130455670_130455749	1.8486	AUGGCUU	BC052898|Fastkd5|380601|FAST kinase domains 5	AF360997|Ubox5|140629|U box domain containing 5	AK034114|Ubox5|140629|U box domain containing 5	NM_080562|Ubox5|140629|U box domain containing 5	AK158052|Ubox5|140629|U box domain containing 5	AK171070|Ubox5|140629|U box domain containing 5	AK005195|Ubox5|140629|U box domain containing 5	AK143929|Fastkd5|380601|FAST kinase domains 5	AK170100|Ubox5|140629|U box domain containing 5
mm9_v1_chr1_-_157820378_157820386	1.84501	AUGGCUU	AK044664|Cep350|74081|centrosomal protein 350	NM_001039184|Cep350|74081|centrosomal protein 350
mm9_v1_chr14_-_47441795_47441916	1.8446	AUGGCUU	AB001732|Gmfb|63985|glia maturation factor, beta	BC040233|Gmfb|63985|glia maturation factor, beta	AB050013|Gmfb|63985|glia maturation factor, beta	BC049134|Gmfb|63985|glia maturation factor, beta	AK013970|Gmfb|63985|glia maturation factor, beta	AK013947|Gmfb|63985|glia maturation factor, beta	AF297220|Gmfb|63985|glia maturation factor, beta	AK142014|Gmfb|63985|glia maturation factor, beta	NM_022023|Gmfb|63985|glia maturation factor, beta
mm9_v1_chr4_-_70195952_70195978	1.8396	AUGGCUU	AK122378|Megf9|230316|multiple EGF-like-domains 9	AK035987|Megf9|230316|multiple EGF-like-domains 9	AK039319|Megf9|230316|multiple EGF-like-domains 9	AK162891|Megf9|230316|multiple EGF-like-domains 9	NM_172694|Megf9|230316|multiple EGF-like-domains 9	AK170687|Megf9|230316|multiple EGF-like-domains 9
mm9_v1_chr16_-_30550622_30550663	1.83833	AUGGCUU	AK031524|Tmem44|224090|transmembrane protein 44	AK045675|Tmem44|224090|transmembrane protein 44	AK048655|Tmem44|224090|transmembrane protein 44	NM_172614|Tmem44|224090|transmembrane protein 44
mm9_v1_chr9_+_94570310_94570389	1.82878	AUGGCUU	NM_177909|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK037058|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	BC153825|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	BC099942|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK172687|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK156494|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9
mm9_v1_chr17_-_54438241_54438358	1.82536	AUGGCUU	AK034415|Slc5a7|63993|solute carrier family 5 (choline transporter), member 7	AK053063|Slc5a7|63993|solute carrier family 5 (choline transporter), member 7	NM_022025|Slc5a7|63993|solute carrier family 5 (choline transporter), member 7
mm9_v1_chr6_-_56319574_56319627	1.81714	AUGGCUU	AK077123|Pde1c|18575|phosphodiesterase 1C	AK015375|Pde1c|18575|phosphodiesterase 1C	AK014887|Pde1c|18575|phosphodiesterase 1C	AK133243|Pde1c|18575|phosphodiesterase 1C	AK029531|Pde1c|18575|phosphodiesterase 1C	NM_001159955|Pde1c|18575|phosphodiesterase 1C	NM_001159956|Pde1c|18575|phosphodiesterase 1C	NM_001159957|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr9_+_114597854_114597998	1.81629	AUGGCUU	AK082950|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1	AK159702|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1	BC023347|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1	NM_146229|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1
mm9_v1_chr13_-_54150991_54151026	1.77322	AUGGCUU	AK044723|Drd1a|13488|dopamine receptor D1A	NM_010076|Drd1a|13488|dopamine receptor D1A
mm9_v1_chr5_+_138526303_138526341	1.7606	AUGGCUU	NM_029869|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	NM_133906|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK036807|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK031759|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020355|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK154831|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020039|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK054323|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1
mm9_v1_chr10_+_52410306_52410508	1.74973	AUGGCUU	NM_178675|Slc35f1|215085|solute carrier family 35, member F1	AK038601|Slc35f1|215085|solute carrier family 35, member F1	AK053426|Slc35f1|215085|solute carrier family 35, member F1	AK139331|Slc35f1|215085|solute carrier family 35, member F1	AK048957|Slc35f1|215085|solute carrier family 35, member F1	AK165021|Slc35f1|215085|solute carrier family 35, member F1	AK053545|Slc35f1|215085|solute carrier family 35, member F1	AK083768|Slc35f1|215085|solute carrier family 35, member F1	AK166268|Slc35f1|215085|solute carrier family 35, member F1	BC059075|Slc35f1|215085|solute carrier family 35, member F1	AK163806|Slc35f1|215085|solute carrier family 35, member F1
mm9_v1_chr4_-_132768403_132768450	1.73258	AUGGCUU	AK140464|Gpr3|14748|G-protein coupled receptor 3	AK158917|Gpr3|14748|G-protein coupled receptor 3	AK140302|Gpr3|14748|G-protein coupled receptor 3	NM_008154|Gpr3|14748|G-protein coupled receptor 3
mm9_v1_chr1_+_153602492_153602592	1.73222	AUGGCUU	AB188342|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	NM_001039644|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	AK141326|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	AK143252|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC138658|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC138659|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC145357|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC145358|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3
mm9_v1_chr2_+_156022382_156022502	1.72015	AUGGCUU	NM_172674|Phf20|228829|PHD finger protein 20	AK045309|Phf20|228829|PHD finger protein 20	AK033017|Phf20|228829|PHD finger protein 20	AK038573|Phf20|228829|PHD finger protein 20	AK142424|Phf20|228829|PHD finger protein 20	BC060121|Phf20|228829|PHD finger protein 20
mm9_v1_chr18_-_82862111_82862127	1.71543	AUGGCUU	BC138187|Zfp236|329002|zinc finger protein 236	BC145179|Zfp236|329002|zinc finger protein 236	BC145180|Zfp236|329002|zinc finger protein 236	NM_177832|Zfp236|329002|zinc finger protein 236
mm9_v1_chr10_-_120748244_120748244	1.69063	AUGGCUU	NM_029057|Tbc1d30|74694|TBC1 domain family, member 30
mm9_v1_chr2_-_167457476_167457545	1.65577	AUGGCUU	AK012021|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	BC003449|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	AK158230|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	NM_023230|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1
mm9_v1_chr1_+_137914635_137914732	1.65428	AUGGCUU	NM_001160146|Tmem9|66241|transmembrane protein 9
mm9_v1_chr2_+_4480799_4480871	1.63587	AUGGCUU	AK077327|Frmd4a|209630|FERM domain containing 4A	NM_001177844|Frmd4a|209630|FERM domain containing 4A	AK148414|Frmd4a|209630|FERM domain containing 4A	AK029073|Frmd4a|209630|FERM domain containing 4A	AK171532|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr2_+_166631011_166631132	1.63423	AUGGCUU	AK087574|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	NM_001085495|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK087920|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	BC158012|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK153722|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm9_v1_chr1_+_137904795_137904795	1.63297	AUGGCUU	NM_001160145|Tmem9|66241|transmembrane protein 9
mm9_v1_chr1_+_196446006_196446022	1.60852	AUGGCUU	NM_008882|Plxna2|18845|plexin A2
mm9_v1_chr3_-_107499460_107499466	1.60034	AUGGCUU	NM_145542|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1
mm9_v1_chr2_-_124949149_124949396	1.59829	AUGGCUU	BC060946|Myef2|17876|myelin basic protein expression factor 2, repressor	AK129336|Myef2|17876|myelin basic protein expression factor 2, repressor	AK142363|Myef2|17876|myelin basic protein expression factor 2, repressor	AK143230|Myef2|17876|myelin basic protein expression factor 2, repressor	AK048404|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_001162417|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_001162418|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_010852|Myef2|17876|myelin basic protein expression factor 2, repressor	AK012133|Myef2|17876|myelin basic protein expression factor 2, repressor
mm9_v1_chr9_+_20970150_20970317	1.57999	AUGGCUU	AK153657|Pde4a|18577|phosphodiesterase 4A, cAMP specific	NM_183408|Pde4a|18577|phosphodiesterase 4A, cAMP specific	BC139405|Pde4a|18577|phosphodiesterase 4A, cAMP specific	BC139408|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chr16_-_13668230_13668281	1.57733	AUGGCUU	AK041044|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK160611|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	BC021899|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK049829|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK045181|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK004572|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	NM_028761|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)
mm9_v1_chr19_-_32786771_32786846	1.57359	AUGGCUU	BC043051|Atad1|67979|ATPase family, AAA domain containing 1	AK044925|Atad1|67979|ATPase family, AAA domain containing 1	BC029085|Atad1|67979|ATPase family, AAA domain containing 1	NM_026487|Atad1|67979|ATPase family, AAA domain containing 1	AK014967|Atad1|67979|ATPase family, AAA domain containing 1	AK030719|Atad1|67979|ATPase family, AAA domain containing 1	AK150469|Atad1|67979|ATPase family, AAA domain containing 1	AK152059|Atad1|67979|ATPase family, AAA domain containing 1	AK033639|Atad1|67979|ATPase family, AAA domain containing 1	AK165953|Atad1|67979|ATPase family, AAA domain containing 1	AK075685|Atad1|67979|ATPase family, AAA domain containing 1
mm9_v1_chr18_-_15309939_15309954	1.53569	AUGGCUU	AY899808|Kctd1|106931|potassium channel tetramerisation domain containing 1	NM_134112|Kctd1|106931|potassium channel tetramerisation domain containing 1
mm9_v1_chr16_-_35769389_35769480	1.52928	AUGGCUU	BC037460|Dirc2|224132|disrupted in renal carcinoma 2 (human)	AK034214|Dirc2|224132|disrupted in renal carcinoma 2 (human)	NM_153550|Dirc2|224132|disrupted in renal carcinoma 2 (human)	AK172331|Dirc2|224132|disrupted in renal carcinoma 2 (human)
mm9_v1_chr19_-_32285445_32285502	1.52866	AUGGCUU	AK079254|Sgms1|208449|sphingomyelin synthase 1	AK133967|Sgms1|208449|sphingomyelin synthase 1	BC019443|Sgms1|208449|sphingomyelin synthase 1	AK150272|Sgms1|208449|sphingomyelin synthase 1	AK152312|Sgms1|208449|sphingomyelin synthase 1	AK160539|Sgms1|208449|sphingomyelin synthase 1	NM_001168526|Sgms1|208449|sphingomyelin synthase 1
mm9_v1_chr13_+_9275741_9275783	1.52682	AUGGCUU	NM_001081426|Dip2c|208440|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm9_v1_chr12_-_4484059_4484074	1.52658	AUGGCUU	NM_010881|Ncoa1|17977|nuclear receptor coactivator 1
mm9_v1_chr15_+_41620926_41621060	1.51816	AUGGCUU	AK040881|Oxr1|170719|oxidation resistance 1	AF324899|Oxr1|170719|oxidation resistance 1	AF333985|Oxr1|170719|oxidation resistance 1	NM_001130163|Oxr1|170719|oxidation resistance 1	NM_130885|Oxr1|170719|oxidation resistance 1
mm9_v1_chr13_+_106233718_106234065	1.5025	AUGGCUU	AK140194|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	NM_008308|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	AK049884|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	AK049814|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	BC138669|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	BC138681|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A
mm9_v1_chr10_-_126648509_126648683	1.50242	AUGGCUU	BC021383|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AB054591|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK148299|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK140079|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	NM_054097|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
mm9_v1_chr1_+_137914574_137914625	1.5019	AUGGCUU	NM_025439|Tmem9|66241|transmembrane protein 9	AK005248|Tmem9|66241|transmembrane protein 9	AK021225|Tmem9|66241|transmembrane protein 9	AK154423|Tmem9|66241|transmembrane protein 9	BC016524|Tmem9|66241|transmembrane protein 9	AK134909|Tmem9|66241|transmembrane protein 9	BC048017|Tmem9|66241|transmembrane protein 9	BC020291|Tmem9|66241|transmembrane protein 9
mm9_v1_chr11_+_54336344_54336357	1.48803	AUGGCUU	AK167055|Rapgef6|192786|Rap guanine nucleotide exchange factor (GEF) 6	NM_175258|Rapgef6|192786|Rap guanine nucleotide exchange factor (GEF) 6	AK040089|Rapgef6|192786|Rap guanine nucleotide exchange factor (GEF) 6
mm9_v1_chr3_+_30691760_30691806	1.48114	AUGGCUU	BC017162|Sec62|69276|SEC62 homolog (S. cerevisiae)	NM_027016|Sec62|69276|SEC62 homolog (S. cerevisiae)
mm9_v1_chr10_-_80119815_80119815	1.47802	AUGGCUU	NM_145361|Btbd2|208198|BTB (POZ) domain containing 2
mm9_v1_chr15_-_64214427_64214520	1.47796	AUGGCUU	BC094581|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1	NM_010026|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1
mm9_v1_chr9_+_111174321_111174442	1.4773	AUGGCUU	BC018474|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	NM_175266|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK032284|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK043518|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK030084|Epm2aip1|77781|EPM2A (laforin) interacting protein 1
mm9_v1_chr9_-_106060406_106060468	1.46792	AUGGCUU	AK052709|Glyctk|235582|glycerate kinase	BC036136|Glyctk|235582|glycerate kinase	BC025935|Glyctk|235582|glycerate kinase	AF455785|Glyctk|235582|glycerate kinase	BC025834|Glyctk|235582|glycerate kinase	BC033063|Glyctk|235582|glycerate kinase	AK049425|Glyctk|235582|glycerate kinase	AK050182|Glyctk|235582|glycerate kinase	NM_001039586|Glyctk|235582|glycerate kinase	NM_174846|Glyctk|235582|glycerate kinase
mm9_v1_chr2_-_165710128_165710217	1.46524	AUGGCUU	AK038961|Zmynd8|228880|zinc finger, MYND-type containing 8	AK155864|Zmynd8|228880|zinc finger, MYND-type containing 8	BC048186|Zmynd8|228880|zinc finger, MYND-type containing 8	NM_027230|Zmynd8|228880|zinc finger, MYND-type containing 8
mm9_v1_chr17_-_24781872_24781901	1.43926	AUGGCUU	BC065778|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK002557|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	NM_023449|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm9_v1_chr7_-_38804503_38804582	1.41708	AUGGCUU	AK160558|C80913|19777|expressed sequence C80913	AK155994|C80913|19777|expressed sequence C80913	AK166566|C80913|19777|expressed sequence C80913	AK170929|C80913|19777|expressed sequence C80913	NM_011274|C80913|19777|expressed sequence C80913
mm9_v1_chr15_-_79518160_79518352	1.37218	AUGGCUU	AK004913|Josd1|74158|Josephin domain containing 1	NM_028792|Josd1|74158|Josephin domain containing 1	AK154799|Josd1|74158|Josephin domain containing 1
mm9_v1_chr4_+_28740280_28740313	1.32729	AUGGCUU	AK033903|Epha7|13841|Eph receptor A7	NM_001122889|Epha7|13841|Eph receptor A7	NM_010141|Epha7|13841|Eph receptor A7	X79082|Epha7|13841|Eph receptor A7	X79083|Epha7|13841|Eph receptor A7	X79084|Epha7|13841|Eph receptor A7
mm9_v1_chr15_+_41278949_41279049	1.32301	AUGGCUU	NM_001130166|Oxr1|170719|oxidation resistance 1	AK158703|Oxr1|170719|oxidation resistance 1
mm9_v1_chr10_-_122633922_122634056	1.31759	AUGGCUU	L10903|Usp15|14479|ubiquitin specific peptidase 15	AF468037|Usp15|14479|ubiquitin specific peptidase 15	AK145749|Usp15|14479|ubiquitin specific peptidase 15	NM_027604|Usp15|14479|ubiquitin specific peptidase 15	AK046332|Usp15|14479|ubiquitin specific peptidase 15	AK083303|Usp15|14479|ubiquitin specific peptidase 15	AK133852|Usp15|14479|ubiquitin specific peptidase 15	AK122301|Usp15|14479|ubiquitin specific peptidase 15	BC050042|Usp15|14479|ubiquitin specific peptidase 15	AK164382|Usp15|14479|ubiquitin specific peptidase 15	AK163315|Usp15|14479|ubiquitin specific peptidase 15	AK168755|Usp15|14479|ubiquitin specific peptidase 15	AK161469|Usp15|14479|ubiquitin specific peptidase 15	AK161957|Usp15|14479|ubiquitin specific peptidase 15	AK163284|Usp15|14479|ubiquitin specific peptidase 15
mm9_v1_chr15_+_41620484_41620584	1.30325	AUGGCUU	NM_001130165|Oxr1|170719|oxidation resistance 1	BC089183|Oxr1|170719|oxidation resistance 1
mm9_v1_chrX_+_148578716_148578819	1.29912	AUGGCUU	AB275281|Iqsec2|245666|IQ motif and Sec7 domain 2	NM_001114664|Iqsec2|245666|IQ motif and Sec7 domain 2	AY451401|Iqsec2|245666|IQ motif and Sec7 domain 2
mm9_v1_chr2_+_4322020_4322021	1.28831	AUGGCUU	BC082808|Frmd4a|209630|FERM domain containing 4A	NM_001177843|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr19_+_36629128_36629172	1.28128	AUGGCUU	AK142777|Hectd2|226098|HECT domain containing 2	NM_001163471|Hectd2|226098|HECT domain containing 2	NM_172637|Hectd2|226098|HECT domain containing 2	BC137671|Hectd2|226098|HECT domain containing 2	BC144815|Hectd2|226098|HECT domain containing 2	AK041629|Hectd2|226098|HECT domain containing 2	AK043646|Hectd2|226098|HECT domain containing 2	AK079321|Hectd2|226098|HECT domain containing 2
mm9_v1_chr1_-_184271729_184271762	1.26691	AUGGCUU	BC094542|Fbxo28|67948|F-box protein 28	NM_175127|Fbxo28|67948|F-box protein 28	AK076211|Fbxo28|67948|F-box protein 28	AK077653|Fbxo28|67948|F-box protein 28
mm9_v1_chr11_-_84684177_84684284	1.26164	AUGGCUU	AB064543|Ggnbp2|217039|gametogenetin binding protein 2	AY633741|Ggnbp2|217039|gametogenetin binding protein 2	NM_153144|Ggnbp2|217039|gametogenetin binding protein 2	AK162027|Ggnbp2|217039|gametogenetin binding protein 2
mm9_v1_chrX_-_140367467_140367853	1.22995	AUGGCUU	AY560329|Dcx|13193|doublecortin	AK048410|Dcx|13193|doublecortin	AF045547|Dcx|13193|doublecortin	AK164119|Dcx|13193|doublecortin	BC056391|Dcx|13193|doublecortin	AK049050|Dcx|13193|doublecortin	NM_001110222|Dcx|13193|doublecortin	BC057010|Dcx|13193|doublecortin	BC062974|Dcx|13193|doublecortin	AK014264|Dcx|13193|doublecortin	NM_001110223|Dcx|13193|doublecortin	NM_001110224|Dcx|13193|doublecortin	NM_010025|Dcx|13193|doublecortin	AB011678|Dcx|13193|doublecortin
mm9_v1_chr2_+_4073908_4073934	1.21861	AUGGCUU	NM_172475|Frmd4a|209630|FERM domain containing 4A	AK034706|Frmd4a|209630|FERM domain containing 4A	BC058672|Frmd4a|209630|FERM domain containing 4A	AK163887|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr18_-_6241497_6241528	1.20746	AUGGCUU	BC069920|Kif5b|16573|kinesin family member 5B	BC090841|Kif5b|16573|kinesin family member 5B	BC040800|Kif5b|16573|kinesin family member 5B	AK133535|Kif5b|16573|kinesin family member 5B	AK136307|Kif5b|16573|kinesin family member 5B	NM_008448|Kif5b|16573|kinesin family member 5B
mm9_v1_chr3_-_127483385_127483450	1.19415	AUGGCUU	AK018401|Alpk1|71481|alpha-kinase 1	AK041315|Alpk1|71481|alpha-kinase 1	AK173191|Alpk1|71481|alpha-kinase 1	NM_027808|Alpk1|71481|alpha-kinase 1
mm9_v1_chr18_-_20904585_20904945	1.19107	AUGGCUU	AK144997|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK138247|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK163956|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK164262|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK164724|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK137385|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK138610|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AF097158|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	NM_019737|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6
mm9_v1_chr18_-_15222079_15222098	1.18521	AUGGCUU	NM_001142731|Kctd1|106931|potassium channel tetramerisation domain containing 1
mm9_v1_chr7_+_73254341_73254400	1.1722	AUGGCUU	AK129255|Chsy1|269941|chondroitin sulfate synthase 1	BC128567|Chsy1|269941|chondroitin sulfate synthase 1	BC153826|Chsy1|269941|chondroitin sulfate synthase 1	BC153827|Chsy1|269941|chondroitin sulfate synthase 1	NM_001081163|Chsy1|269941|chondroitin sulfate synthase 1
mm9_v1_chrX_+_82819294_82819360	1.16663	AUGGCUU	AK220185|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3	NM_025729|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm9_v1_chr8_+_11758322_11758364	1.14729	AUGGCUU	NM_001113518|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	NM_017402|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	BC044838|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK052545|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AY220301|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)
mm9_v1_chr7_-_128850659_128850766	1.14509	AUGGCUU	NM_001033173|Usp31|76179|ubiquitin specific peptidase 31
mm9_v1_chr1_+_92895285_92895313	1.13179	AUGGCUU	NM_001111312|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	AK044174|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1
mm9_v1_chr1_-_179178874_179178897	1.12376	AUGGCUU	AF124142|Akt3|23797|thymoma viral proto-oncogene 3	BC066861|Akt3|23797|thymoma viral proto-oncogene 3	NM_011785|Akt3|23797|thymoma viral proto-oncogene 3
mm9_v1_chr5_+_122608248_122608342	1.10544	AUGGCUU	AK147131|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	NM_013636|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	BC021646|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK152422|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK169336|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform
mm9_v1_chr14_-_79124895_79124895	1.0999	AUGGCUU	NM_001081336|Dgkh|380921|diacylglycerol kinase, eta
mm9_v1_chr15_+_78707595_78707620	1.07133	AUGGCUU	BC026802|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1	NM_145929|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1
mm9_v1_chr1_-_192886758_192886821	1.0672	AUGGCUU	AK156071|Tatdn3|68972|TatD DNase domain containing 3	AK005193|Tatdn3|68972|TatD DNase domain containing 3	BC061248|Tatdn3|68972|TatD DNase domain containing 3	NM_001163421|Tatdn3|68972|TatD DNase domain containing 3	NM_001163422|Tatdn3|68972|TatD DNase domain containing 3	NM_026895|Tatdn3|68972|TatD DNase domain containing 3
mm9_v1_chr5_+_31117077_31117214	1.06705	AUGGCUU	BC048833|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	AF468005|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	BC057918|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	NM_133350|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	AK177097|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3
mm9_v1_chr11_-_5344795_5344912	1.06618	AUGGCUU	AK163639|Znrf3|407821|zinc and ring finger 3	NM_001080924|Znrf3|407821|zinc and ring finger 3
mm9_v1_chr11_+_80022524_80022572	1.06543	AUGGCUU	AK147801|Rhot1|59040|ras homolog gene family, member T1	AK167502|Rhot1|59040|ras homolog gene family, member T1	NM_001163354|Rhot1|59040|ras homolog gene family, member T1	NM_001163355|Rhot1|59040|ras homolog gene family, member T1	NM_021536|Rhot1|59040|ras homolog gene family, member T1
mm9_v1_chr9_+_54547344_54547366	1.05597	AUGGCUU	AK046476|Dnaja4|58233|DnaJ (Hsp40) homolog, subfamily A, member 4	AK076175|Dnaja4|58233|DnaJ (Hsp40) homolog, subfamily A, member 4	AK141909|Dnaja4|58233|DnaJ (Hsp40) homolog, subfamily A, member 4	NM_021422|Dnaja4|58233|DnaJ (Hsp40) homolog, subfamily A, member 4
mm9_v1_chr15_+_8119063_8119105	1.04194	AUGGCUU	AK028897|2410089E03Rik|73692|RIKEN cDNA 2410089E03 gene	NM_001162906|2410089E03Rik|73692|RIKEN cDNA 2410089E03 gene
mm9_v1_chr4_+_11413062_11413204	1.03772	AUGGCUU	AK170075|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK155623|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	NM_001081183|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK076731|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK162531|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	BC033309|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK052499|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK034232|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK122509|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene
mm9_v1_chr2_+_153117135_153117203	1.01474	AUGGCUU	NM_008444|Kif3b|16569|kinesin family member 3B	AK147467|Kif3b|16569|kinesin family member 3B	AK083700|Kif3b|16569|kinesin family member 3B	AK148200|Kif3b|16569|kinesin family member 3B	BC065132|Kif3b|16569|kinesin family member 3B	AK122258|Kif3b|16569|kinesin family member 3B	AK081541|Kif3b|16569|kinesin family member 3B
mm9_v1_chr6_+_115881925_115881944	1.00854	AUGGCUU	AK044333|Rho|212541|rhodopsin	AK044412|Rho|212541|rhodopsin	BC094460|Rho|212541|rhodopsin	BC031766|Rho|212541|rhodopsin	BC013125|Rho|212541|rhodopsin	NM_145383|Rho|212541|rhodopsin
mm9_v1_chr6_-_149050201_149050210	1.00701	AUGGCUU	NM_177192|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr14_+_105657889_105657939	1.00197	AUGGCUU	NM_001190989|Ndfip2|76273|Nedd4 family interacting protein 2	NM_029561|Ndfip2|76273|Nedd4 family interacting protein 2
mm9_v1_chr5_-_151397024_151397110	0.993682	AUGGCUU	AK042145|N4bp2l1|100637|NEDD4 binding protein 2-like 1	AK046116|N4bp2l1|100637|NEDD4 binding protein 2-like 1	AK138666|N4bp2l1|100637|NEDD4 binding protein 2-like 1	AK155341|N4bp2l1|100637|NEDD4 binding protein 2-like 1	AK131647|N4bp2l1|100637|NEDD4 binding protein 2-like 1	NM_133898|N4bp2l1|100637|NEDD4 binding protein 2-like 1	AK010587|N4bp2l1|100637|NEDD4 binding protein 2-like 1
mm9_v1_chr3_-_81949667_81949798	0.98878	AUGGCUU	BC057327|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK031305|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK028558|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK004815|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AF297082|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	NM_021896|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3
mm9_v1_chr4_-_128483355_128483429	0.970475	AUGGCUU	NM_001081098|Zfp362|230761|zinc finger protein 362
mm9_v1_chrX_+_70587906_70588053	0.916878	AUGGCUU	NM_031494|Zfp275|27081|zinc finger protein 275	AK142957|Zfp275|27081|zinc finger protein 275	NM_001160229|Zfp275|27081|zinc finger protein 275	BC138002|Zfp275|27081|zinc finger protein 275	BC138003|Zfp275|27081|zinc finger protein 275
mm9_v1_chr7_-_138553991_138554026	0.885719	AUGGCUU	BC048183|Ikzf5|67143|IKAROS family zinc finger 5	BC058537|Ikzf5|67143|IKAROS family zinc finger 5	NM_175115|Ikzf5|67143|IKAROS family zinc finger 5	AK153883|Ikzf5|67143|IKAROS family zinc finger 5	AK033716|Ikzf5|67143|IKAROS family zinc finger 5	BC089455|Ikzf5|67143|IKAROS family zinc finger 5	AK169384|Ikzf5|67143|IKAROS family zinc finger 5
mm9_v1_chr11_-_109334465_109334613	0.881564	AUGGCUU	AK170472|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	BC017129|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	NM_134038|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm9_v1_chr11_+_115243203_115243359	0.87421	AUGGCUU	NM_001080929|Cdr2l|237988|cerebellar degeneration-related protein 2-like	BC144823|Cdr2l|237988|cerebellar degeneration-related protein 2-like	BC150668|Cdr2l|237988|cerebellar degeneration-related protein 2-like
mm9_v1_chrX_-_20527674_20527737	0.866397	AUGGCUU	BC054474|Elk1|13712|ELK1, member of ETS oncogene family	AK132354|Elk1|13712|ELK1, member of ETS oncogene family	NM_007922|Elk1|13712|ELK1, member of ETS oncogene family	AK082260|Elk1|13712|ELK1, member of ETS oncogene family
mm9_v1_chr5_-_5514787_5514975	0.842883	AUGGCUU	NM_001193660|Cldn12|64945|claudin 12	AK166110|Cldn12|64945|claudin 12	AK049331|Cldn12|64945|claudin 12	AK132155|Cldn12|64945|claudin 12	NM_001193659|Cldn12|64945|claudin 12	NM_001193661|Cldn12|64945|claudin 12	AK128999|Cldn12|64945|claudin 12	BC024057|Cldn12|64945|claudin 12	NM_022890|Cldn12|64945|claudin 12
mm9_v1_chr14_+_69955194_69955282	0.835364	AUGGCUU	NM_026174|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK045342|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK004761|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK042053|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	BC052090|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	BC043134|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4
mm9_v1_chr16_-_28929698_28929810	0.82549	AUGGCUU	BC085092|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	BC068245|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	NM_177718|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene
mm9_v1_chr5_-_84846348_84846408	0.819954	AUGGCUU	BC057401|Epha5|13839|Eph receptor A5	AK133698|Epha5|13839|Eph receptor A5	AK034289|Epha5|13839|Eph receptor A5	AK049740|Epha5|13839|Eph receptor A5	NM_007937|Epha5|13839|Eph receptor A5
mm9_v1_chr1_-_107253245_107253286	0.812805	AUGGCUU	AK044638|Rnf152|320311|ring finger protein 152	NM_001160368|Rnf152|320311|ring finger protein 152	NM_178779|Rnf152|320311|ring finger protein 152
mm9_v1_chr14_+_58417025_58417046	0.805929	AUGGCUU	NM_009119|Sap18|20220|Sin3-associated polypeptide 18
mm9_v1_chr1_-_134439500_134439516	0.802399	AUGGCUU	AK147602|Cntn2|21367|contactin 2	NM_177129|Cntn2|21367|contactin 2
mm9_v1_chr9_-_44773594_44773682	0.791184	AUGGCUU	BC025043|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028721|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC006649|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC021406|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028850|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK172893|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	NM_145400|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)
mm9_v1_chr4_-_149075697_149075737	0.777044	AUGGCUU	AK040867|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK153304|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK155835|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK169494|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001029837|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm9_v1_chr5_-_108416027_108416163	0.764131	AUGGCUU	BC055842|Fam69a|67266|family with sequence similarity 69, member A	BC095935|Fam69a|67266|family with sequence similarity 69, member A	AK008504|Fam69a|67266|family with sequence similarity 69, member A	BC116683|Fam69a|67266|family with sequence similarity 69, member A	AK153488|Fam69a|67266|family with sequence similarity 69, member A	BC061013|Fam69a|67266|family with sequence similarity 69, member A	AK038811|Fam69a|67266|family with sequence similarity 69, member A	AK048979|Fam69a|67266|family with sequence similarity 69, member A	AK050305|Fam69a|67266|family with sequence similarity 69, member A	AK013580|Fam69a|67266|family with sequence similarity 69, member A	NM_026062|Fam69a|67266|family with sequence similarity 69, member A
mm9_v1_chr10_+_41170163_41170242	0.75157	AUGGCUU	AK146986|Zbtb24|268294|zinc finger and BTB domain containing 24	AK154467|Zbtb24|268294|zinc finger and BTB domain containing 24	AY210402|Zbtb24|268294|zinc finger and BTB domain containing 24	BC050933|Zbtb24|268294|zinc finger and BTB domain containing 24	NM_153398|Zbtb24|268294|zinc finger and BTB domain containing 24	AK054097|Zbtb24|268294|zinc finger and BTB domain containing 24	AK169260|Zbtb24|268294|zinc finger and BTB domain containing 24	BC055367|Zbtb24|268294|zinc finger and BTB domain containing 24	AF263010|Zbtb24|268294|zinc finger and BTB domain containing 24
mm9_v1_chr3_-_63733305_63733317	0.741504	AUGGCUU	AK087526|E130311K13Rik|329659|RIKEN cDNA E130311K13 gene	NM_177856|E130311K13Rik|329659|RIKEN cDNA E130311K13 gene
mm9_v1_chr2_-_150434141_150434304	0.740053	AUGGCUU	AK189217|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene	AK009057|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene	NM_027977|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene	BC055706|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene	AJ310638|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene	AK154266|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene
mm9_v1_chr2_+_32576591_32576654	0.737754	AUGGCUU	AB043953|Sh2d3c|27387|SH2 domain containing 3C	NM_013781|Sh2d3c|27387|SH2 domain containing 3C	BC113203|Sh2d3c|27387|SH2 domain containing 3C	AF168364|Sh2d3c|27387|SH2 domain containing 3C	AK155165|Sh2d3c|27387|SH2 domain containing 3C	AK172072|Sh2d3c|27387|SH2 domain containing 3C
mm9_v1_chr14_-_34260323_34260352	0.729116	AUGGCUU	AK139498|Mapk8|26419|mitogen-activated protein kinase 8	AK032486|Mapk8|26419|mitogen-activated protein kinase 8	AK043102|Mapk8|26419|mitogen-activated protein kinase 8	AK085745|Mapk8|26419|mitogen-activated protein kinase 8	AK030767|Mapk8|26419|mitogen-activated protein kinase 8	NM_016700|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr13_-_54712629_54712744	0.727336	AUGGCUU	AK029382|Cltb|74325|clathrin, light polypeptide (Lcb)	NM_028870|Cltb|74325|clathrin, light polypeptide (Lcb)	BC070404|Cltb|74325|clathrin, light polypeptide (Lcb)	AK045989|Cltb|74325|clathrin, light polypeptide (Lcb)	AK159480|Cltb|74325|clathrin, light polypeptide (Lcb)	AK167531|Cltb|74325|clathrin, light polypeptide (Lcb)	AK146816|Cltb|74325|clathrin, light polypeptide (Lcb)
mm9_v1_chr8_+_114062242_114062242	0.709015	AUGGCUU	NM_001168623|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr8_+_114060341_114060576	0.706358	AUGGCUU	AK079338|Znrf1|170737|zinc and ring finger 1	NM_001168621|Znrf1|170737|zinc and ring finger 1	NM_001168622|Znrf1|170737|zinc and ring finger 1	NM_133206|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr12_-_101963226_101963268	0.698716	AUGGCUU	AY341873|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	AY341881|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	BC035298|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	NM_153587|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5
mm9_v1_chr14_+_48740495_48740543	0.680252	AUGGCUU	AK030564|Peli2|93834|pellino 2	AK045515|Peli2|93834|pellino 2	NM_033602|Peli2|93834|pellino 2
mm9_v1_chr14_-_65568677_65568719	0.668333	AUGGCUU	AK089782|Hmbox1|219150|homeobox containing 1	AK161592|Hmbox1|219150|homeobox containing 1	NM_177338|Hmbox1|219150|homeobox containing 1	BC051457|Hmbox1|219150|homeobox containing 1	AK052729|Hmbox1|219150|homeobox containing 1
mm9_v1_chr8_+_109555200_109555247	0.66833	AUGGCUU	AK159117|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK047821|Vps4a|116733|vacuolar protein sorting 4a (yeast)	BC018368|Vps4a|116733|vacuolar protein sorting 4a (yeast)	NM_126165|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK169949|Vps4a|116733|vacuolar protein sorting 4a (yeast)
mm9_v1_chr4_-_126106749_126106807	0.634008	AUGGCUU	AK035042|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK083652|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK171118|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK154436|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	NM_153402|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3
mm9_v1_chr3_-_91887051_91887065	0.619867	AUGGCUU	BC058223|Lor|16939|loricrin	BC026781|Lor|16939|loricrin	M34398|Lor|16939|loricrin	NM_008508|Lor|16939|loricrin
mm9_v1_chr11_+_116976475_116976498	0.607023	AUGGCUU	AK047396|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	NM_001166506|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	NM_001166507|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	NM_028777|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)
mm9_v1_chr13_+_113078658_113078796	0.590598	AUGGCUU	AK039553|Ankrd55|77318|ankyrin repeat domain 55	NM_001168403|Ankrd55|77318|ankyrin repeat domain 55	NM_001168405|Ankrd55|77318|ankyrin repeat domain 55	NM_029898|Ankrd55|77318|ankyrin repeat domain 55	AK081197|Ankrd55|77318|ankyrin repeat domain 55	NM_001168404|Ankrd55|77318|ankyrin repeat domain 55	AK140417|Ankrd55|77318|ankyrin repeat domain 55
mm9_v1_chr11_-_109334909_109334911	0.590201	AUGGCUU	NM_001029842|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	AK032026|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm9_v1_chr7_-_87065480_87065546	0.576504	AUGGCUU	U91933|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	BC060236|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	BC028319|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK037336|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK028372|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK083911|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK150085|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	NM_009682|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit
mm9_v1_chrX_-_137077639_137077729	0.559443	AUGGCUU	BC028813|Tsc22d3|14605|TSC22 domain family, member 3	AF201288|Tsc22d3|14605|TSC22 domain family, member 3	AF024519|Tsc22d3|14605|TSC22 domain family, member 3	AK083389|Tsc22d3|14605|TSC22 domain family, member 3	NM_010286|Tsc22d3|14605|TSC22 domain family, member 3	AK144196|Tsc22d3|14605|TSC22 domain family, member 3
mm9_v1_chr12_-_11157647_11157647	0.547911	AUGGCUU	AK162957|Kcns3|238076|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	NM_001168564|Kcns3|238076|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3
mm9_v1_chr11_-_65601774_65601862	0.539658	AUGGCUU	AK139777|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK044534|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK044698|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK036928|Map2k4|26398|mitogen-activated protein kinase kinase 4	NM_009157|Map2k4|26398|mitogen-activated protein kinase kinase 4
mm9_v1_chr19_+_41986360_41986656	0.529681	AUGGCUU	NM_023418|Pgam1|18648|phosphoglycerate mutase 1	BC002241|Pgam1|18648|phosphoglycerate mutase 1	BC106139|Pgam1|18648|phosphoglycerate mutase 1	BC005661|Pgam1|18648|phosphoglycerate mutase 1	AF283667|Pgam1|18648|phosphoglycerate mutase 1	AK004921|Pgam1|18648|phosphoglycerate mutase 1	AK009905|Pgam1|18648|phosphoglycerate mutase 1	AK144681|Pgam1|18648|phosphoglycerate mutase 1	AK153202|Pgam1|18648|phosphoglycerate mutase 1	AK159305|Pgam1|18648|phosphoglycerate mutase 1	AK150716|Pgam1|18648|phosphoglycerate mutase 1	AK152443|Pgam1|18648|phosphoglycerate mutase 1	AK165410|Pgam1|18648|phosphoglycerate mutase 1	AK168949|Pgam1|18648|phosphoglycerate mutase 1	BC083090|Pgam1|18648|phosphoglycerate mutase 1	BC066844|Pgam1|18648|phosphoglycerate mutase 1
mm9_v1_chr16_-_30283310_30283345	0.529203	AUGGCUU	BC050245|Lrrc15|74488|leucine rich repeat containing 15	AK017350|Lrrc15|74488|leucine rich repeat containing 15	NM_028973|Lrrc15|74488|leucine rich repeat containing 15
mm9_v1_chr10_+_79179326_79179429	0.529053	AUGGCUU	AJ225122|Hcn2|15166|hyperpolarization-activated, cyclic nucleotide-gated K+ 2	NM_008226|Hcn2|15166|hyperpolarization-activated, cyclic nucleotide-gated K+ 2	AB154248|Hcn2|15166|hyperpolarization-activated, cyclic nucleotide-gated K+ 2
mm9_v1_chr8_-_112132522_112132608	0.52006	AUGGCUU	AK013102|Dhodh|56749|dihydroorotate dehydrogenase	BC027829|Dhodh|56749|dihydroorotate dehydrogenase	BC045206|Dhodh|56749|dihydroorotate dehydrogenase	NM_020046|Dhodh|56749|dihydroorotate dehydrogenase
mm9_v1_chr1_+_136456754_136456771	0.517806	AUGGCUU	NM_152895|Kdm5b|75605|lysine (K)-specific demethylase 5B	AK220451|Kdm5b|75605|lysine (K)-specific demethylase 5B	AY082429|Kdm5b|75605|lysine (K)-specific demethylase 5B	AY082430|Kdm5b|75605|lysine (K)-specific demethylase 5B	BC048180|Kdm5b|75605|lysine (K)-specific demethylase 5B	BC057318|Kdm5b|75605|lysine (K)-specific demethylase 5B
mm9_v1_chr4_-_34830178_34830200	0.509952	AUGGCUU	AK017652|Zfp292|30046|zinc finger protein 292	AK018067|Zfp292|30046|zinc finger protein 292	NM_013889|Zfp292|30046|zinc finger protein 292	BC036997|Zfp292|30046|zinc finger protein 292
mm9_v1_chr14_-_120441639_120441656	0.508594	AUGGCUU	AK085382|Oxgr1|239283|oxoglutarate (alpha-ketoglutarate) receptor 1	AK142510|Oxgr1|239283|oxoglutarate (alpha-ketoglutarate) receptor 1	NM_001001490|Oxgr1|239283|oxoglutarate (alpha-ketoglutarate) receptor 1
mm9_v1_chrX_-_54591905_54591905	0.507689	AUGGCUU	AF393831|Arhgef6|73341|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	NM_152801|Arhgef6|73341|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
mm9_v1_chr11_+_74433092_74433113	0.507624	AUGGCUU	AK143211|E130309D14Rik|432582|RIKEN cDNA E130309D14 gene	NM_001013784|E130309D14Rik|432582|RIKEN cDNA E130309D14 gene
mm9_v1_chr5_-_143942408_143942453	0.497889	AUGGCUU	AF226870|Rbak|57782|RB-associated KRAB repressor	NM_001045482|Rbak|57782|RB-associated KRAB repressor	NM_021326|Rbak|57782|RB-associated KRAB repressor	AK051009|Rbak|57782|RB-associated KRAB repressor
mm9_v1_chr7_+_129210684_129210770	0.467101	AUGGCUU	AK077395|Ubfd1|28018|ubiquitin family domain containing 1	NM_138589|Ubfd1|28018|ubiquitin family domain containing 1	BC011313|Ubfd1|28018|ubiquitin family domain containing 1	AK033428|Ubfd1|28018|ubiquitin family domain containing 1
mm9_v1_chr15_+_100592177_100592343	0.458173	AUGGCUU	AK034237|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	NM_021530|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK083945|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK050563|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK039404|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	BC030388|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AF224508|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK173014|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8
mm9_v1_chr18_-_70632130_70632138	0.458052	AUGGCUU	AK037066|4930503L19Rik|269033|RIKEN cDNA 4930503L19 gene	NM_172967|4930503L19Rik|269033|RIKEN cDNA 4930503L19 gene
mm9_v1_chr19_+_45005608_45005655	0.449865	AUGGCUU	NM_001081225|Fam178a|226151|family with sequence similarity 178, member A	AK031688|Fam178a|226151|family with sequence similarity 178, member A	AK147588|Fam178a|226151|family with sequence similarity 178, member A	AK020064|Fam178a|226151|family with sequence similarity 178, member A	AK045983|Fam178a|226151|family with sequence similarity 178, member A
mm9_v1_chr10_-_52101880_52101956	0.440484	AUGGCUU	BC051171|Gopc|94221|golgi associated PDZ and coiled-coil motif containing	NM_053187|Gopc|94221|golgi associated PDZ and coiled-coil motif containing	AK171881|Gopc|94221|golgi associated PDZ and coiled-coil motif containing
mm9_v1_chr2_-_72818502_72818502	0.437365	AUGGCUU	BC079874|Sp3|20687|trans-acting transcription factor 3	NM_001018042|Sp3|20687|trans-acting transcription factor 3
mm9_v1_chr11_-_30098163_30098286	0.428221	AUGGCUU	AF017112|Spnb2|20742|spectrin beta 2	AF016040|Spnb2|20742|spectrin beta 2	AK079842|Spnb2|20742|spectrin beta 2	AK157727|Spnb2|20742|spectrin beta 2	AK169544|Spnb2|20742|spectrin beta 2	NM_009260|Spnb2|20742|spectrin beta 2
mm9_v1_chr9_+_107790457_107790481	0.425796	AUGGCUU	NM_028369|Mon1a|72825|MON1 homolog A (yeast)	BC058717|Mon1a|72825|MON1 homolog A (yeast)
mm9_v1_chr12_-_36883307_36883421	0.409985	AUGGCUU	BC058796|Bzw2|66912|basic leucine zipper and W2 domains 2	AB244988|Bzw2|66912|basic leucine zipper and W2 domains 2	BC013060|Bzw2|66912|basic leucine zipper and W2 domains 2	AK088108|Bzw2|66912|basic leucine zipper and W2 domains 2	AK132595|Bzw2|66912|basic leucine zipper and W2 domains 2	AK162647|Bzw2|66912|basic leucine zipper and W2 domains 2	AK011253|Bzw2|66912|basic leucine zipper and W2 domains 2	AK160544|Bzw2|66912|basic leucine zipper and W2 domains 2	AK003229|Bzw2|66912|basic leucine zipper and W2 domains 2	NM_025840|Bzw2|66912|basic leucine zipper and W2 domains 2
mm9_v1_chr1_+_39251056_39251116	0.391473	AUGGCUU	U77969|Npas2|18143|neuronal PAS domain protein 2	BC109166|Npas2|18143|neuronal PAS domain protein 2	NM_008719|Npas2|18143|neuronal PAS domain protein 2
mm9_v1_chr1_+_36528441_36528549	0.368154	AUGGCUU	NM_033570|Cnnm4|94220|cyclin M4	AK173209|Cnnm4|94220|cyclin M4
mm9_v1_chr6_-_83391623_83391671	0.36237	AUGGCUU	AK044758|Tet3|194388|tet oncogene family member 3	AK046543|Tet3|194388|tet oncogene family member 3	AK046552|Tet3|194388|tet oncogene family member 3	AK046553|Tet3|194388|tet oncogene family member 3	NM_183138|Tet3|194388|tet oncogene family member 3
mm9_v1_chr1_+_107560433_107560513	0.360769	AUGGCUU	AK035724|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	NM_029349|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	NM_173187|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	AK148005|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC051567|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC117950|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC117949|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	AK009628|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene
mm9_v1_chr11_-_69227176_69227176	0.354727	AUGGCUU	NM_001017426|Kdm6b|216850|KDM1 lysine (K)-specific demethylase 6B
mm9_v1_chr16_-_95219189_95219332	0.34552	AUGGCUU	U51125|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	BC120794|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	BC125565|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U51122|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U51123|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U51124|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U11859|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U37253|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	AK139056|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	NM_001025584|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	NM_001025585|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	NM_010606|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	AK044218|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6
mm9_v1_chr11_-_106474237_106474312	0.330361	AUGGCUU	AK129434|Tex2|21763|testis expressed gene 2	NM_198292|Tex2|21763|testis expressed gene 2	AK168397|Tex2|21763|testis expressed gene 2
mm9_v1_chr13_-_96902531_96902531	0.31333	AUGGCUU	AK173092|Sv2c|75209|synaptic vesicle glycoprotein 2c	NM_029210|Sv2c|75209|synaptic vesicle glycoprotein 2c
mm9_v1_chr5_+_29895742_29895846	0.308459	AUGGCUU	AK046056|Ube3c|100763|ubiquitin protein ligase E3C	NM_133907|Ube3c|100763|ubiquitin protein ligase E3C	AK122187|Ube3c|100763|ubiquitin protein ligase E3C
mm9_v1_chr1_+_94728217_94728298	0.293337	AUGGCUU	AK154899|Gpc1|14733|glypican 1	AF185613|Gpc1|14733|glypican 1	NM_016696|Gpc1|14733|glypican 1
mm9_v1_chr12_-_106103285_106103341	0.285712	AUGGCUU	AB047978|Clmn|94040|calmin	AB059643|Clmn|94040|calmin	AB059644|Clmn|94040|calmin	AB059645|Clmn|94040|calmin	AB059646|Clmn|94040|calmin	AB059647|Clmn|94040|calmin	AB059648|Clmn|94040|calmin	NM_001040682|Clmn|94040|calmin	NM_053155|Clmn|94040|calmin
mm9_v1_chrX_-_137135022_137135060	0.277591	AUGGCUU	AF201289|Tsc22d3|14605|TSC22 domain family, member 3	EU818782|Tsc22d3|14605|TSC22 domain family, member 3	NM_001077364|Tsc22d3|14605|TSC22 domain family, member 3
mm9_v1_chr2_+_119798434_119798434	0.265303	AUGGCUU	BC070449|Mapkbp1|26390|mitogen-activated protein kinase binding protein 1	NM_011941|Mapkbp1|26390|mitogen-activated protein kinase binding protein 1
mm9_v1_chr19_+_47253309_47253309	0.264769	AUGGCUU	BC099702|Neurl1a|18011|neuralized homolog 1A (Drosophila)	NM_021360|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr6_+_30351902_30351953	0.257216	AUGGCUU	AK172923|Klhdc10|76788|kelch domain containing 10	BC060132|Klhdc10|76788|kelch domain containing 10	NM_029742|Klhdc10|76788|kelch domain containing 10	AK039732|Klhdc10|76788|kelch domain containing 10	AK053834|Klhdc10|76788|kelch domain containing 10	AK085130|Klhdc10|76788|kelch domain containing 10
mm9_v1_chr15_-_27955602_27955621	0.239647	AUGGCUU	NM_001081302|Trio|223435|triple functional domain (PTPRF interacting)
mm9_v1_chr12_-_4234293_4234293	0.238368	AUGGCUU	AK029226|Cenpo|52504|centromere protein O	NM_134046|Cenpo|52504|centromere protein O
mm9_v1_chrX_+_34335642_34335646	0.230732	AUGGCUU	U27316|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK003467|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	NM_007451|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr19_-_32423805_32423805	0.21667	AUGGCUU	BC076618|Sgms1|208449|sphingomyelin synthase 1	NM_001168525|Sgms1|208449|sphingomyelin synthase 1
mm9_v1_chr14_-_17407701_17408109	0.204072	AUGGCUU	AK078471|Rarb|218772|retinoic acid receptor, beta	NM_011243|Rarb|218772|retinoic acid receptor, beta	S92180|Rarb|218772|retinoic acid receptor, beta	S56660|Rarb|218772|retinoic acid receptor, beta	AK054178|Rarb|218772|retinoic acid receptor, beta	BC076597|Rarb|218772|retinoic acid receptor, beta	X56573|Rarb|218772|retinoic acid receptor, beta
mm9_v1_chr7_+_26067197_26067278	0.19439	AUGGCUU	AK147276|Cic|71722|capicua homolog (Drosophila)	NM_001110131|Cic|71722|capicua homolog (Drosophila)	NM_001110132|Cic|71722|capicua homolog (Drosophila)	NM_027882|Cic|71722|capicua homolog (Drosophila)
mm9_v1_chr6_-_72389491_72389552	0.180232	AUGGCUU	BC003451|Mat2a|232087|methionine adenosyltransferase II, alpha	AB070266|Mat2a|232087|methionine adenosyltransferase II, alpha	BC058360|Mat2a|232087|methionine adenosyltransferase II, alpha	AK145407|Mat2a|232087|methionine adenosyltransferase II, alpha	AK052764|Mat2a|232087|methionine adenosyltransferase II, alpha	AK133960|Mat2a|232087|methionine adenosyltransferase II, alpha	AK144189|Mat2a|232087|methionine adenosyltransferase II, alpha	AK150040|Mat2a|232087|methionine adenosyltransferase II, alpha	AK151281|Mat2a|232087|methionine adenosyltransferase II, alpha	AK160869|Mat2a|232087|methionine adenosyltransferase II, alpha	AK161852|Mat2a|232087|methionine adenosyltransferase II, alpha	AK164137|Mat2a|232087|methionine adenosyltransferase II, alpha	AK166671|Mat2a|232087|methionine adenosyltransferase II, alpha	AK168155|Mat2a|232087|methionine adenosyltransferase II, alpha	AK169705|Mat2a|232087|methionine adenosyltransferase II, alpha	AK034757|Mat2a|232087|methionine adenosyltransferase II, alpha	NM_145569|Mat2a|232087|methionine adenosyltransferase II, alpha
mm9_v1_chr12_+_111723922_111723992	0.13975	AUGGCUU	AK031584|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081457|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081458|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_012023|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	BC003979|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr12_-_11157178_11157178	0.137032	AUGGCUU	AK046054|Kcns3|238076|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	NM_173417|Kcns3|238076|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3
mm9_v1_chr12_+_75008853_75009062	0.128804	AUGGCUU	NM_010431|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK034087|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK150367|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK138944|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK017853|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	BC026139|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AF003695|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr15_+_41662472_41662583	0.119636	AUGGCUU	NM_001130164|Oxr1|170719|oxidation resistance 1	AK014186|3110047M12Rik|73184|RIKEN cDNA 3110047M12 gene
mm9_v1_chr6_+_37480172_37480192	0.119311	AUGGCUU	BC018333|Akr1d1|208665|aldo-keto reductase family 1, member D1	NM_145364|Akr1d1|208665|aldo-keto reductase family 1, member D1
mm9_v1_chr9_+_56842653_56842808	0.0982797	AUGGCUU	BC053017|Ptpn9|56294|protein tyrosine phosphatase, non-receptor type 9	NM_019651|Ptpn9|56294|protein tyrosine phosphatase, non-receptor type 9
mm9_v1_chr1_-_13364092_13364163	0.095704	AUGGCUU	AF000582|Ncoa2|17978|nuclear receptor coactivator 2	AK048972|Ncoa2|17978|nuclear receptor coactivator 2	AK087443|Ncoa2|17978|nuclear receptor coactivator 2	U39060|Ncoa2|17978|nuclear receptor coactivator 2	AK052117|Ncoa2|17978|nuclear receptor coactivator 2	NM_001077695|Ncoa2|17978|nuclear receptor coactivator 2	NM_008678|Ncoa2|17978|nuclear receptor coactivator 2
mm9_v1_chr2_+_75497282_75497379	0.0941824	AUGGCUU	NM_053263|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_146130|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_198090|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK133860|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK010481|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC038364|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK169663|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AB201711|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC057655|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC062198|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AF463524|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116250|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116251|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC157904|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC157919|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158038|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158074|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC172011|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC023908|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC064824|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3
mm9_v1_chr9_-_43013831_43013943	0.0922472	AUGGCUU	Z18537|Pou2f3|18988|POU domain, class 2, transcription factor 3	L14677|Pou2f3|18988|POU domain, class 2, transcription factor 3	NM_011139|Pou2f3|18988|POU domain, class 2, transcription factor 3
mm9_v1_chr9_-_36954858_36954932	0.0848724	AUGGCUU	NM_148950|Pknox2|208076|Pbx/knotted 1 homeobox 2
mm9_v1_chr9_-_36954842_36954852	0.0835491	AUGGCUU	AK144270|Pknox2|208076|Pbx/knotted 1 homeobox 2	AK084178|Pknox2|208076|Pbx/knotted 1 homeobox 2	AK082952|Pknox2|208076|Pbx/knotted 1 homeobox 2	NM_001029838|Pknox2|208076|Pbx/knotted 1 homeobox 2
mm9_v1_chr18_-_61946299_61946348	0.0802387	AUGGCUU	AK053714|Afap1l1|106877|actin filament associated protein 1-like 1	AK035227|Afap1l1|106877|actin filament associated protein 1-like 1	NM_178928|Afap1l1|106877|actin filament associated protein 1-like 1
mm9_v1_chr2_+_32143769_32143812	0.0763462	AUGGCUU	AK077516|Golga2|99412|golgi autoantigen, golgin subfamily a, 2	NM_001080968|Golga2|99412|golgi autoantigen, golgin subfamily a, 2	NM_133852|Golga2|99412|golgi autoantigen, golgin subfamily a, 2
mm9_v1_chr2_+_144353480_144353495	0.0736542	AUGGCUU	AK029286|Polr3f|70408|polymerase (RNA) III (DNA directed) polypeptide F	NM_029763|Polr3f|70408|polymerase (RNA) III (DNA directed) polypeptide F	AK036166|Polr3f|70408|polymerase (RNA) III (DNA directed) polypeptide F	AK144679|Polr3f|70408|polymerase (RNA) III (DNA directed) polypeptide F	AK031473|Polr3f|70408|polymerase (RNA) III (DNA directed) polypeptide F	AK171146|Polr3f|70408|polymerase (RNA) III (DNA directed) polypeptide F	BC009159|Polr3f|70408|polymerase (RNA) III (DNA directed) polypeptide F	AK013897|Polr3f|70408|polymerase (RNA) III (DNA directed) polypeptide F	AK014110|Polr3f|70408|polymerase (RNA) III (DNA directed) polypeptide F
mm9_v1_chr17_+_29405732_29405781	0.0700954	AUGGCUU	NM_030561|BC004004|80748|cDNA sequence BC004004
mm9_v1_chr2_+_52716901_52716906	0.0650297	AUGGCUU	NM_172409|Fmnl2|71409|formin-like 2
mm9_v1_chr19_+_60887452_60887529	0.0581187	AUGGCUU	NM_001167829|Fam45a|67894|family with sequence similarity 45, member A	NM_026437|Fam45a|67894|family with sequence similarity 45, member A	AK004643|Fam45a|67894|family with sequence similarity 45, member A	AK168474|Fam45a|67894|family with sequence similarity 45, member A	AK171767|Fam45a|67894|family with sequence similarity 45, member A	AK145769|Fam45a|67894|family with sequence similarity 45, member A	AK007867|Fam45a|67894|family with sequence similarity 45, member A	BC013514|Fam45a|67894|family with sequence similarity 45, member A	AK202624|Fam45a|67894|family with sequence similarity 45, member A
mm9_v1_chr9_+_44412931_44412987	0.057496	AUGGCUU	NM_001110826|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_007841|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_181324|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK148483|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK036648|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK054144|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chr5_+_150480804_150480876	0.049269	AUGGCUU	NM_001081204|B3galtl|381694|beta 1,3-galactosyltransferase-like	AK089440|B3galtl|381694|beta 1,3-galactosyltransferase-like	AK145082|B3galtl|381694|beta 1,3-galactosyltransferase-like	AB253762|B3galtl|381694|beta 1,3-galactosyltransferase-like
mm9_v1_chr3_+_94641479_94641499	0.0467795	AUGGCUU	NM_001165948|Pogz|229584|pogo transposable element with ZNF domain	NM_172683|Pogz|229584|pogo transposable element with ZNF domain	BC065134|Pogz|229584|pogo transposable element with ZNF domain	BC066108|Pogz|229584|pogo transposable element with ZNF domain
mm9_v1_chr9_-_62996767_62996767	0.040903	AUGGCUU	AK029916|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163758|Skor1|207667|SKI family transcriptional corepressor 1
mm9_v1_chr3_-_68930928_68931049	0.0400757	AUGGCUU	BC052162|Kpna4|16649|karyopherin (importin) alpha 4	NM_008467|Kpna4|16649|karyopherin (importin) alpha 4	AK147920|Kpna4|16649|karyopherin (importin) alpha 4
mm9_v1_chrX_-_141921588_141921636	0.0317025	AUGGCUU	AF461135|Amot|27494|angiomotin	NM_153319|Amot|27494|angiomotin	BC057638|Amot|27494|angiomotin
mm9_v1_chr17_-_25152174_25152174	0.0298267	AUGGCUU	AK147411|Cramp1l|57354|Crm, cramped-like (Drosophila)	AK147449|Cramp1l|57354|Crm, cramped-like (Drosophila)	NM_020608|Cramp1l|57354|Crm, cramped-like (Drosophila)
mm9_v1_chr11_-_86071041_86071069	0.0251499	AUGGCUU	AK037055|Ints2|70422|integrator complex subunit 2	AK129323|Ints2|70422|integrator complex subunit 2	NM_027421|Ints2|70422|integrator complex subunit 2
mm9_v1_chr11_-_121215559_121215772	0.0169731	AUGGCUU	AK182151|Wdr45l|66840|Wdr45 like	AK189483|Wdr45l|66840|Wdr45 like	AK215641|Wdr45l|66840|Wdr45 like	BC004595|Wdr45l|66840|Wdr45 like	AK170602|Wdr45l|66840|Wdr45 like	AK013170|Wdr45l|66840|Wdr45 like	AK086235|Wdr45l|66840|Wdr45 like	AK168603|Wdr45l|66840|Wdr45 like	AK151975|Wdr45l|66840|Wdr45 like	AK002352|Wdr45l|66840|Wdr45 like	AK146101|Wdr45l|66840|Wdr45 like	NM_025793|Wdr45l|66840|Wdr45 like
mm9_v1_chr1_-_164670534_164670687	0.00879619	AUGGCUU	AK013732|Prrc2c|226562|proline-rich coiled-coil 2C	AK077748|Prrc2c|226562|proline-rich coiled-coil 2C	BC053406|Prrc2c|226562|proline-rich coiled-coil 2C	BC064009|Prrc2c|226562|proline-rich coiled-coil 2C	BC021412|Prrc2c|226562|proline-rich coiled-coil 2C	BC037745|Prrc2c|226562|proline-rich coiled-coil 2C	BC080672|Prrc2c|226562|proline-rich coiled-coil 2C	AK030766|Prrc2c|226562|proline-rich coiled-coil 2C	AK135245|Prrc2c|226562|proline-rich coiled-coil 2C	BC006723|Prrc2c|226562|proline-rich coiled-coil 2C	AK007762|Prrc2c|226562|proline-rich coiled-coil 2C	AK167018|Prrc2c|226562|proline-rich coiled-coil 2C	AK082487|Prrc2c|226562|proline-rich coiled-coil 2C	AK166509|Prrc2c|226562|proline-rich coiled-coil 2C	NM_001081290|Prrc2c|226562|proline-rich coiled-coil 2C
mm9_v1_chr1_-_158869401_158869517	0.00834663	AUGGCUU	AK019543|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_001159966|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2
mm9_v1_chr1_+_133424544_133424596	0.00101246	AUGGCUU	AK076058|Fam72a|108900|family with sequence similarity 72, member A	AK041641|Fam72a|108900|family with sequence similarity 72, member A	NM_175382|Fam72a|108900|family with sequence similarity 72, member A	BC106123|Fam72a|108900|family with sequence similarity 72, member A	BC138225|Fam72a|108900|family with sequence similarity 72, member A	BC145667|Fam72a|108900|family with sequence similarity 72, member A
