mm9_v1_chr10_+_110357230_110357257	8.97809	CACAGUG	AF037208|Csrp2|13008|cysteine and glycine-rich protein 2	AK010626|Csrp2|13008|cysteine and glycine-rich protein 2	NM_007792|Csrp2|13008|cysteine and glycine-rich protein 2	AK003328|Csrp2|13008|cysteine and glycine-rich protein 2	AK012647|Csrp2|13008|cysteine and glycine-rich protein 2	BC012663|Csrp2|13008|cysteine and glycine-rich protein 2
mm9_v1_chr8_-_25549415_25549421	7.06079	CACAGUG	AK007441|1810011O10Rik|69068|RIKEN cDNA 1810011O10 gene	NM_026931|1810011O10Rik|69068|RIKEN cDNA 1810011O10 gene
mm9_v1_chr9_-_58884114_58884258	6.26614	CACAGUG	Y09535|Neo1|18007|neogenin	BC054540|Neo1|18007|neogenin	AK084609|Neo1|18007|neogenin	NM_001042752|Neo1|18007|neogenin	NM_008684|Neo1|18007|neogenin
mm9_v1_chr9_+_32031833_32031859	5.53866	CACAGUG	NM_177379|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr4_+_109088251_109088289	5.46617	CACAGUG	NM_001145948|Ttc39a|230603|tetratricopeptide repeat domain 39A	AK076720|Ttc39a|230603|tetratricopeptide repeat domain 39A	AK076641|Ttc39a|230603|tetratricopeptide repeat domain 39A	AK076772|Ttc39a|230603|tetratricopeptide repeat domain 39A
mm9_v1_chr13_-_34437042_34437162	5.38117	CACAGUG	AK147397|Slc22a23|73102|solute carrier family 22, member 23	NM_001033167|Slc22a23|73102|solute carrier family 22, member 23
mm9_v1_chr2_+_136539143_136539198	5.2191	CACAGUG	NM_011428|Snap25|20614|synaptosomal-associated protein 25	AK078038|Snap25|20614|synaptosomal-associated protein 25
mm9_v1_chrX_+_70728939_70728991	5.10706	CACAGUG	BC057185|Bgn|12111|biglycan	AK135496|Bgn|12111|biglycan	AK155973|Bgn|12111|biglycan	AK164867|Bgn|12111|biglycan	L20276|Bgn|12111|biglycan	NM_007542|Bgn|12111|biglycan	AK171870|Bgn|12111|biglycan	AK086920|Bgn|12111|biglycan	BC019502|Bgn|12111|biglycan	BC005452|Bgn|12111|biglycan
mm9_v1_chr19_-_34329804_34329828	5.09321	CACAGUG	X13297|Acta2|11475|actin, alpha 2, smooth muscle, aorta	BC064800|Acta2|11475|actin, alpha 2, smooth muscle, aorta	AK017374|Acta2|11475|actin, alpha 2, smooth muscle, aorta	AK156331|Acta2|11475|actin, alpha 2, smooth muscle, aorta	NM_007392|Acta2|11475|actin, alpha 2, smooth muscle, aorta
mm9_v1_chr4_+_109079704_109079727	5.01425	CACAGUG	AK048659|Ttc39a|230603|tetratricopeptide repeat domain 39A	NM_153392|Ttc39a|230603|tetratricopeptide repeat domain 39A	AK082733|Ttc39a|230603|tetratricopeptide repeat domain 39A	BC023883|Ttc39a|230603|tetratricopeptide repeat domain 39A
mm9_v1_chr6_+_17413930_17414106	4.78248	CACAGUG	NM_008591|Met|17295|met proto-oncogene	AK170560|Met|17295|met proto-oncogene	AK148258|Met|17295|met proto-oncogene
mm9_v1_chr9_+_31923720_31923720	4.70209	CACAGUG	NM_001195632|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr2_-_115890747_115890848	4.6848	CACAGUG	U68383|Meis2|17536|Meis homeobox 2	U68384|Meis2|17536|Meis homeobox 2	AJ000504|Meis2|17536|Meis homeobox 2	AJ000505|Meis2|17536|Meis homeobox 2	AJ000506|Meis2|17536|Meis homeobox 2	AJ000507|Meis2|17536|Meis homeobox 2	AK146633|Meis2|17536|Meis homeobox 2	NM_001136072|Meis2|17536|Meis homeobox 2	NM_001159567|Meis2|17536|Meis homeobox 2	NM_001159568|Meis2|17536|Meis homeobox 2	NM_010825|Meis2|17536|Meis homeobox 2	BC017375|Meis2|17536|Meis homeobox 2
mm9_v1_chr2_-_115890247_115890356	4.5924	CACAGUG	AK158513|Meis2|17536|Meis homeobox 2	AK158839|Meis2|17536|Meis homeobox 2	NM_001159569|Meis2|17536|Meis homeobox 2	NM_001159570|Meis2|17536|Meis homeobox 2
mm9_v1_chr12_+_80130149_80130201	4.53194	CACAGUG	NM_181073|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	AK122464|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm9_v1_chr16_-_35490849_35490973	4.4123	CACAGUG	BC009151|Pdia5|72599|protein disulfide isomerase associated 5	NM_028295|Pdia5|72599|protein disulfide isomerase associated 5
mm9_v1_chr2_-_103143352_103143356	4.23027	CACAGUG	NM_007914|Ehf|13661|ets homologous factor
mm9_v1_chr10_-_8605668_8605870	4.16003	CACAGUG	AJ507736|Sash1|70097|SAM and SH3 domain containing 1	AK149872|Sash1|70097|SAM and SH3 domain containing 1	AK049453|Sash1|70097|SAM and SH3 domain containing 1	NM_175155|Sash1|70097|SAM and SH3 domain containing 1
mm9_v1_chr18_-_33623668_33623692	4.1221	CACAGUG	NM_001109988|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr15_+_54402914_54402981	4.12041	CACAGUG	NM_178920|Mal2|105853|mal, T-cell differentiation protein 2
mm9_v1_chr9_-_49607164_49607185	4.08197	CACAGUG	NM_001081445|Ncam1|17967|neural cell adhesion molecule 1	NM_001113204|Ncam1|17967|neural cell adhesion molecule 1	NM_010875|Ncam1|17967|neural cell adhesion molecule 1
mm9_v1_chr5_-_108304062_108304125	4.01191	CACAGUG	AK165332|Evi5|14020|ecotropic viral integration site 5	BC030056|Evi5|14020|ecotropic viral integration site 5	NM_007964|Evi5|14020|ecotropic viral integration site 5	U53586|Evi5|14020|ecotropic viral integration site 5
mm9_v1_chr1_-_82287990_82288082	3.98866	CACAGUG	AK045317|Irs1|16367|insulin receptor substrate 1	NM_010570|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr4_-_55545337_55545348	3.98452	CACAGUG	U70662|Klf4|16600|Kruppel-like factor 4 (gut)	AK144942|Klf4|16600|Kruppel-like factor 4 (gut)	AK155343|Klf4|16600|Kruppel-like factor 4 (gut)	NM_010637|Klf4|16600|Kruppel-like factor 4 (gut)
mm9_v1_chr5_+_75548309_75548318	3.95028	CACAGUG	NM_011058|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	AK081664|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide
mm9_v1_chr18_-_33623069_33623089	3.85099	CACAGUG	BC054762|D0H4S114|27528|DNA segment, human D4S114	NM_001109990|D0H4S114|27528|DNA segment, human D4S114	X70398|D0H4S114|27528|DNA segment, human D4S114	AK048361|D0H4S114|27528|DNA segment, human D4S114	AK081502|D0H4S114|27528|DNA segment, human D4S114	AK133769|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr18_-_33623287_33623340	3.82561	CACAGUG	NM_053078|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr17_+_43804373_43804482	3.81248	CACAGUG	AK031733|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1	NM_018887|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1	BC021418|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1	AF237981|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1	BC037663|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1
mm9_v1_chr3_+_129235284_129235325	3.76494	CACAGUG	AK087440|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AK029029|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	NM_130450|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	BC051041|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AY053453|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm9_v1_chr18_-_33623400_33623430	3.74581	CACAGUG	NM_001109989|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr10_-_36858671_36858801	3.50663	CACAGUG	BC046601|Marcks|17118|myristoylated alanine rich protein kinase C substrate	M60474|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC002068|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC039911|Marcks|17118|myristoylated alanine rich protein kinase C substrate	NM_008538|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr2_+_167906462_167906503	3.44448	CACAGUG	NM_021409|Pard6b|58220|par-6 (partitioning defective 6) homolog beta (C. elegans)
mm9_v1_chr5_+_75552144_75552190	3.38214	CACAGUG	AK163952|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	BC053036|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	NM_001083316|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide
mm9_v1_chr2_-_130468507_130468540	3.37422	CACAGUG	AK161711|Prosapip1|241638|ProSAPiP1 protein	AK148251|Prosapip1|241638|ProSAPiP1 protein	NM_197945|Prosapip1|241638|ProSAPiP1 protein
mm9_v1_chr3_-_102007885_102007885	3.21147	CACAGUG	AK135230|Vangl1|229658|vang-like 1 (van gogh, Drosophila)	NM_001165951|Vangl1|229658|vang-like 1 (van gogh, Drosophila)
mm9_v1_chr10_+_94977721_94977835	3.16683	CACAGUG	AK005302|Ube2n|93765|ubiquitin-conjugating enzyme E2N	AK161968|Ube2n|93765|ubiquitin-conjugating enzyme E2N	AK005788|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC067069|Ube2n|93765|ubiquitin-conjugating enzyme E2N	NM_080560|Ube2n|93765|ubiquitin-conjugating enzyme E2N	AY039837|Ube2n|93765|ubiquitin-conjugating enzyme E2N	Y09873|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC034898|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC052203|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC132630|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC138211|Ube2n|93765|ubiquitin-conjugating enzyme E2N
mm9_v1_chr8_-_48437701_48437701	3.12525	CACAGUG	BC100572|Stox2|71069|storkhead box 2	BC100573|Stox2|71069|storkhead box 2	NM_175162|Stox2|71069|storkhead box 2
mm9_v1_chr18_-_34166859_34166859	3.12193	CACAGUG	NM_013512|Epb4.1l4a|13824|erythrocyte protein band 4.1-like 4a
mm9_v1_chr15_+_7090525_7090548	3.12055	CACAGUG	D17444|Lifr|16880|leukemia inhibitory factor receptor	D26177|Lifr|16880|leukemia inhibitory factor receptor	S73495|Lifr|16880|leukemia inhibitory factor receptor	S73496|Lifr|16880|leukemia inhibitory factor receptor	NM_013584|Lifr|16880|leukemia inhibitory factor receptor	BC031929|Lifr|16880|leukemia inhibitory factor receptor
mm9_v1_chrX_+_138662479_138662479	3.09351	CACAGUG	NM_001161430|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chr5_-_21850490_21850524	3.02206	CACAGUG	U24703|Reln|19699|reelin	AK035849|Reln|19699|reelin	AK042773|Reln|19699|reelin	AK082447|Reln|19699|reelin	AK082508|Reln|19699|reelin	AK164676|Reln|19699|reelin	NM_011261|Reln|19699|reelin
mm9_v1_chr3_-_157587998_157588029	2.97829	CACAGUG	AK002480|Cth|107869|cystathionase (cystathionine gamma-lyase)	BC019483|Cth|107869|cystathionase (cystathionine gamma-lyase)	AY083352|Cth|107869|cystathionase (cystathionine gamma-lyase)	NM_145953|Cth|107869|cystathionase (cystathionine gamma-lyase)
mm9_v1_chr5_+_102194126_102194174	2.94775	CACAGUG	BC055292|Cds1|74596|CDP-diacylglycerol synthase 1	NM_173370|Cds1|74596|CDP-diacylglycerol synthase 1
mm9_v1_chr15_-_90880241_90880381	2.8893	CACAGUG	AF202892|Kif21a|16564|kinesin family member 21A	BC060698|Kif21a|16564|kinesin family member 21A	BC062896|Kif21a|16564|kinesin family member 21A	AK163536|Kif21a|16564|kinesin family member 21A	AK047880|Kif21a|16564|kinesin family member 21A	AK147436|Kif21a|16564|kinesin family member 21A	AK008213|Kif21a|16564|kinesin family member 21A	AK047350|Kif21a|16564|kinesin family member 21A	NM_001109040|Kif21a|16564|kinesin family member 21A	NM_001109041|Kif21a|16564|kinesin family member 21A	NM_001109042|Kif21a|16564|kinesin family member 21A	NM_016705|Kif21a|16564|kinesin family member 21A	AK019525|Kif21a|16564|kinesin family member 21A
mm9_v1_chr3_+_145421621_145421769	2.87784	CACAGUG	AK143507|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	AK148907|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	NM_026993|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	AK010430|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	BC034505|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1
mm9_v1_chr6_-_118147735_118147761	2.87546	CACAGUG	BC059012|Ret|19713|ret proto-oncogene	NM_001080780|Ret|19713|ret proto-oncogene	NM_009050|Ret|19713|ret proto-oncogene
mm9_v1_chr9_+_83441886_83441956	2.86548	CACAGUG	AK032092|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2	NM_172507|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2	AK029392|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2	AK076202|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2	AK160357|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2
mm9_v1_chr3_-_102008512_102008615	2.83744	CACAGUG	AK167743|Vangl1|229658|vang-like 1 (van gogh, Drosophila)	AF481860|Vangl1|229658|vang-like 1 (van gogh, Drosophila)	NM_177545|Vangl1|229658|vang-like 1 (van gogh, Drosophila)
mm9_v1_chr8_-_48374755_48374779	2.83456	CACAGUG	AK053894|Stox2|71069|storkhead box 2	NM_001114311|Stox2|71069|storkhead box 2
mm9_v1_chr8_+_24521967_24522003	2.81994	CACAGUG	AK088868|Sfrp1|20377|secreted frizzled-related protein 1	NM_013834|Sfrp1|20377|secreted frizzled-related protein 1	BC094662|Sfrp1|20377|secreted frizzled-related protein 1	U88566|Sfrp1|20377|secreted frizzled-related protein 1	BC024495|Sfrp1|20377|secreted frizzled-related protein 1
mm9_v1_chr13_-_117099629_117099895	2.78445	CACAGUG	AB104633|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AJ132765|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132609|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK044406|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK090263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK143052|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	NM_021459|Isl1|16392|ISL1 transcription factor, LIM/homeodomain
mm9_v1_chr8_+_12949417_12949485	2.77834	CACAGUG	NM_001159485|Mcf2l|17207|mcf.2 transforming sequence-like	NM_001159486|Mcf2l|17207|mcf.2 transforming sequence-like	AK170186|Mcf2l|17207|mcf.2 transforming sequence-like	AK170558|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chrX_+_138662725_138662809	2.76521	CACAGUG	NM_172782|Nxt2|237082|nuclear transport factor 2-like export factor 2	AK144349|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC064727|Nxt2|237082|nuclear transport factor 2-like export factor 2	AK032102|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC068166|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC118503|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC094570|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chr4_+_62876389_62876445	2.72897	CACAGUG	AK157951|Col27a1|373864|collagen, type XXVII, alpha 1	NM_025685|Col27a1|373864|collagen, type XXVII, alpha 1
mm9_v1_chr15_-_98438063_98438063	2.69976	CACAGUG	AK147516|Adcy6|11512|adenylate cyclase 6	NM_007405|Adcy6|11512|adenylate cyclase 6
mm9_v1_chr14_+_48740495_48740543	2.69651	CACAGUG	AK030564|Peli2|93834|pellino 2	AK045515|Peli2|93834|pellino 2	NM_033602|Peli2|93834|pellino 2
mm9_v1_chr15_+_85566122_85566257	2.64962	CACAGUG	AK035676|Ppara|19013|peroxisome proliferator activated receptor alpha	NM_011144|Ppara|19013|peroxisome proliferator activated receptor alpha	BC016892|Ppara|19013|peroxisome proliferator activated receptor alpha
mm9_v1_chr5_-_107718503_107718613	2.61905	CACAGUG	AK165763|Tgfbr3|21814|transforming growth factor, beta receptor III	BC070428|Tgfbr3|21814|transforming growth factor, beta receptor III	AK166082|Tgfbr3|21814|transforming growth factor, beta receptor III	NM_011578|Tgfbr3|21814|transforming growth factor, beta receptor III
mm9_v1_chr10_+_51953390_51953445	2.53134	CACAGUG	AK016485|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	NM_025705|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	AK157211|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1
mm9_v1_chr8_+_12915892_12915957	2.52708	CACAGUG	NM_178076|Mcf2l|17207|mcf.2 transforming sequence-like	AK082849|Mcf2l|17207|mcf.2 transforming sequence-like	AK048898|Mcf2l|17207|mcf.2 transforming sequence-like	BC058622|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr1_-_138850206_138850206	2.51599	CACAGUG	DQ133942|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	NM_001159769|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2
mm9_v1_chr13_+_111185251_111185286	2.49431	CACAGUG	NM_152804|Plk2|20620|polo-like kinase 2 (Drosophila)	AK133962|Plk2|20620|polo-like kinase 2 (Drosophila)	AK143452|Plk2|20620|polo-like kinase 2 (Drosophila)	AK164365|Plk2|20620|polo-like kinase 2 (Drosophila)	BC034513|Plk2|20620|polo-like kinase 2 (Drosophila)	BC035451|Plk2|20620|polo-like kinase 2 (Drosophila)	M96163|Plk2|20620|polo-like kinase 2 (Drosophila)
mm9_v1_chr9_+_72510153_72510370	2.47131	CACAGUG	D85414|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	NM_010890|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK088767|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK133838|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK144240|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK169582|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK088620|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	BC138813|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK050517|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK080349|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK160570|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK122203|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	BC080710|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4
mm9_v1_chr9_-_30939380_30939391	2.45063	CACAGUG	AK085410|St14|19143|suppression of tumorigenicity 14 (colon carcinoma)	AK052738|St14|19143|suppression of tumorigenicity 14 (colon carcinoma)	NM_011176|St14|19143|suppression of tumorigenicity 14 (colon carcinoma)
mm9_v1_chr10_-_83996632_83996824	2.41564	CACAGUG	NM_175451|Ckap4|216197|cytoskeleton-associated protein 4	BC138318|Ckap4|216197|cytoskeleton-associated protein 4	BC138320|Ckap4|216197|cytoskeleton-associated protein 4	AK132136|Ckap4|216197|cytoskeleton-associated protein 4
mm9_v1_chr10_+_12810593_12810650	2.40552	CACAGUG	BC065150|Plagl1|22634|pleiomorphic adenoma gene-like 1	NM_009538|Plagl1|22634|pleiomorphic adenoma gene-like 1	AK142210|Plagl1|22634|pleiomorphic adenoma gene-like 1	AK142052|Plagl1|22634|pleiomorphic adenoma gene-like 1
mm9_v1_chr8_-_105308910_105309020	2.40265	CACAGUG	BC046314|Cdh11|12552|cadherin 11	D31963|Cdh11|12552|cadherin 11	AK049652|Cdh11|12552|cadherin 11	AK045023|Cdh11|12552|cadherin 11	NM_009866|Cdh11|12552|cadherin 11
mm9_v1_chr15_+_85565935_85565993	2.40038	CACAGUG	AK081709|Ppara|19013|peroxisome proliferator activated receptor alpha	NM_001113418|Ppara|19013|peroxisome proliferator activated receptor alpha
mm9_v1_chr10_+_115738429_115738633	2.3984	CACAGUG	AK147439|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	AK147668|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	NM_029928|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	AY077755|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	BC141006|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	BC145111|Ptprb|19263|protein tyrosine phosphatase, receptor type, B
mm9_v1_chr15_+_99223377_99223451	2.37558	CACAGUG	NM_001171034|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	NM_001171036|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	NM_026669|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK019865|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK050299|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK088030|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK088683|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK139901|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK159380|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK166935|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK036782|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK036994|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK049604|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK050323|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	BC005588|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6
mm9_v1_chr1_+_88199795_88199833	2.36126	CACAGUG	NM_145222|B3gnt7|227327|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	AK080081|B3gnt7|227327|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	AF502429|B3gnt7|227327|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
mm9_v1_chr4_+_97444312_97444317	2.3476	CACAGUG	NM_001122953|Nfia|18027|nuclear factor I/A	NM_010905|Nfia|18027|nuclear factor I/A
mm9_v1_chr14_-_65881225_65881304	2.33669	CACAGUG	BC066186|Fzd3|14365|frizzled homolog 3 (Drosophila)	BC103714|Fzd3|14365|frizzled homolog 3 (Drosophila)	AK134261|Fzd3|14365|frizzled homolog 3 (Drosophila)	AK160554|Fzd3|14365|frizzled homolog 3 (Drosophila)	BC050965|Fzd3|14365|frizzled homolog 3 (Drosophila)	NM_021458|Fzd3|14365|frizzled homolog 3 (Drosophila)
mm9_v1_chr12_+_110691637_110691748	2.33025	CACAGUG	AK162458|Dlk1|13386|delta-like 1 homolog (Drosophila)	NM_001190703|Dlk1|13386|delta-like 1 homolog (Drosophila)	NM_001190704|Dlk1|13386|delta-like 1 homolog (Drosophila)	NM_001190705|Dlk1|13386|delta-like 1 homolog (Drosophila)	NM_010052|Dlk1|13386|delta-like 1 homolog (Drosophila)	AK005522|Dlk1|13386|delta-like 1 homolog (Drosophila)	AK164935|Dlk1|13386|delta-like 1 homolog (Drosophila)	L12721|Dlk1|13386|delta-like 1 homolog (Drosophila)	BC052159|Dlk1|13386|delta-like 1 homolog (Drosophila)	U15980|Dlk1|13386|delta-like 1 homolog (Drosophila)	EU434917|Dlk1|13386|delta-like 1 homolog (Drosophila)
mm9_v1_chr5_-_74464390_74464465	2.32843	CACAGUG	BC039916|Usp46|69727|ubiquitin specific peptidase 46	NM_177561|Usp46|69727|ubiquitin specific peptidase 46	AK145298|Usp46|69727|ubiquitin specific peptidase 46
mm9_v1_chr4_-_154010868_154010981	2.28318	CACAGUG	AB078338|Prdm16|70673|PR domain containing 16	AK083829|Prdm16|70673|PR domain containing 16	BC053082|Prdm16|70673|PR domain containing 16	BC059838|Prdm16|70673|PR domain containing 16	NM_001177995|Prdm16|70673|PR domain containing 16	NM_027504|Prdm16|70673|PR domain containing 16
mm9_v1_chr4_+_101092307_101092393	2.24717	CACAGUG	NM_009647|Ak4|11639|adenylate kinase 4	AK144439|Ak4|11639|adenylate kinase 4	BC086791|Ak4|11639|adenylate kinase 4	D85036|Ak4|11639|adenylate kinase 4	AB020239|Ak4|11639|adenylate kinase 4	BC086663|Ak4|11639|adenylate kinase 4	AK166975|Ak4|11639|adenylate kinase 4
mm9_v1_chr18_+_69505374_69505487	2.24237	CACAGUG	NM_001083967|Tcf4|21413|transcription factor 4	AK081012|Tcf4|21413|transcription factor 4	AK145285|Tcf4|21413|transcription factor 4	AK028748|Tcf4|21413|transcription factor 4	S75870|Tcf4|21413|transcription factor 4
mm9_v1_chr11_-_86807216_86807263	2.22958	CACAGUG	NM_001005341|Ypel2|77864|yippee-like 2 (Drosophila)
mm9_v1_chr12_+_109648864_109648871	2.17128	CACAGUG	BC059839|Eml1|68519|echinoderm microtubule associated protein like 1	NM_001043336|Eml1|68519|echinoderm microtubule associated protein like 1	BC125289|Eml1|68519|echinoderm microtubule associated protein like 1	BC144757|Eml1|68519|echinoderm microtubule associated protein like 1
mm9_v1_chr12_+_109660951_109661025	2.13038	CACAGUG	NM_001043335|Eml1|68519|echinoderm microtubule associated protein like 1
mm9_v1_chr4_+_101091913_101091947	2.12459	CACAGUG	NM_001177605|Ak4|11639|adenylate kinase 4	AK154374|Ak4|11639|adenylate kinase 4	NM_001177604|Ak4|11639|adenylate kinase 4
mm9_v1_chr5_-_115140869_115140951	2.12351	CACAGUG	AF209703|Gltp|56356|glycolipid transfer protein	BC053729|Gltp|56356|glycolipid transfer protein	AK157313|Gltp|56356|glycolipid transfer protein	BC016584|Gltp|56356|glycolipid transfer protein	NM_019821|Gltp|56356|glycolipid transfer protein
mm9_v1_chr1_+_66515003_66515020	2.11254	CACAGUG	AK043914|Unc80|329178|unc-80 homolog (C. elegans)	FJ210934|Unc80|329178|unc-80 homolog (C. elegans)	NM_175510|Unc80|329178|unc-80 homolog (C. elegans)
mm9_v1_chr11_-_113427050_113427128	2.10362	CACAGUG	AK192534|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	AK007986|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	AK170673|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	AK049368|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	AK036999|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	BC019647|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	BC031751|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	NM_001166503|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	NM_027216|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11
mm9_v1_chr6_-_53770687_53770818	2.09311	CACAGUG	BC043099|Tril|66873|TLR4 interactor with leucine-rich repeats	BC059224|Tril|66873|TLR4 interactor with leucine-rich repeats	NM_025817|Tril|66873|TLR4 interactor with leucine-rich repeats
mm9_v1_chr7_-_77505248_77505478	2.03329	CACAGUG	X76653|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	U07635|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	AK140125|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	BC042484|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	NM_009697|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2
mm9_v1_chr1_+_153602492_153602592	2.01279	CACAGUG	AB188342|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	NM_001039644|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	AK141326|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	AK143252|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC138658|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC138659|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC145357|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC145358|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3
mm9_v1_chr18_+_69504145_69504185	2.00209	CACAGUG	AK051958|Tcf4|21413|transcription factor 4	NM_013685|Tcf4|21413|transcription factor 4	U16322|Tcf4|21413|transcription factor 4
mm9_v1_chr15_+_99223622_99223695	1.99627	CACAGUG	NM_001171035|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6
mm9_v1_chr10_-_82996846_82996884	1.97777	CACAGUG	AK141954|Aldh1l2|216188|aldehyde dehydrogenase 1 family, member L2	NM_153543|Aldh1l2|216188|aldehyde dehydrogenase 1 family, member L2
mm9_v1_chr1_-_138856866_138857085	1.97234	CACAGUG	AB221629|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	BC137845|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	M81385|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	NM_030676|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2
mm9_v1_chr2_+_181531011_181531011	1.96602	CACAGUG	AF004294|Myt1|17932|myelin transcription factor 1	NM_001171680|Myt1|17932|myelin transcription factor 1
mm9_v1_chr13_+_75844906_75844941	1.95475	CACAGUG	NM_138953|Ell2|192657|elongation factor RNA polymerase II 2
mm9_v1_chr5_+_73872293_73872293	1.89847	CACAGUG	AK076991|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_001190734|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr3_+_5218545_5218658	1.88105	CACAGUG	AK084213|Zfhx4|80892|zinc finger homeodomain 4	BC061199|Zfhx4|80892|zinc finger homeodomain 4	NM_030708|Zfhx4|80892|zinc finger homeodomain 4	AK044540|Zfhx4|80892|zinc finger homeodomain 4
mm9_v1_chr4_-_82151180_82151288	1.8804	CACAGUG	AK034793|Nfib|18028|nuclear factor I/B	Y07686|Nfib|18028|nuclear factor I/B	AK146480|Nfib|18028|nuclear factor I/B	NM_001113209|Nfib|18028|nuclear factor I/B	NM_001113210|Nfib|18028|nuclear factor I/B	NM_008687|Nfib|18028|nuclear factor I/B	AK034261|Nfib|18028|nuclear factor I/B	AK087480|Nfib|18028|nuclear factor I/B	AK084941|Nfib|18028|nuclear factor I/B
mm9_v1_chr4_+_54960816_54960816	1.87713	CACAGUG	NM_172867|Zfp462|242466|zinc finger protein 462
mm9_v1_chr8_+_81552335_81552485	1.87472	CACAGUG	BC094552|Zfp827|622675|zinc finger protein 827	NM_178267|Zfp827|622675|zinc finger protein 827	BC151183|Zfp827|622675|zinc finger protein 827	AK154905|Zfp827|622675|zinc finger protein 827
mm9_v1_chr6_+_91162756_91162777	1.87325	CACAGUG	NM_001081437|Fbln2|14115|fibulin 2	NM_007992|Fbln2|14115|fibulin 2	BC005443|Fbln2|14115|fibulin 2
mm9_v1_chr18_-_39078304_39078358	1.85717	CACAGUG	U67610|Fgf1|14164|fibroblast growth factor 1	AK035330|Fgf1|14164|fibroblast growth factor 1	NM_010197|Fgf1|14164|fibroblast growth factor 1
mm9_v1_chr2_+_91490266_91490274	1.84993	CACAGUG	AK046291|Arhgap1|228359|Rho GTPase activating protein 1	NM_001145902|Arhgap1|228359|Rho GTPase activating protein 1
mm9_v1_chr13_-_114408704_114408818	1.83261	CACAGUG	AK052343|Snx18|170625|sorting nexin 18	BC137801|Snx18|170625|sorting nexin 18	BC145951|Snx18|170625|sorting nexin 18	AF408408|Snx18|170625|sorting nexin 18	AK155955|Snx18|170625|sorting nexin 18	AK143645|Snx18|170625|sorting nexin 18	BC063089|Snx18|170625|sorting nexin 18	NM_130796|Snx18|170625|sorting nexin 18
mm9_v1_chr2_+_48669628_48669670	1.83032	CACAGUG	NM_007396|Acvr2a|11480|activin receptor IIA	AK081022|Acvr2a|11480|activin receptor IIA
mm9_v1_chr4_+_97248556_97248685	1.82293	CACAGUG	D90173|Nfia|18027|nuclear factor I/A	AK048696|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene	AK139357|Nfia|18027|nuclear factor I/A	NM_001122952|Nfia|18027|nuclear factor I/A	AK051361|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene
mm9_v1_chr1_-_186556329_186556486	1.78069	CACAGUG	AK036435|Hlx|15284|H2.0-like homeobox	BC064068|Hlx|15284|H2.0-like homeobox	NM_008250|Hlx|15284|H2.0-like homeobox	X58250|Hlx|15284|H2.0-like homeobox
mm9_v1_chr5_-_88956788_88956921	1.77459	CACAGUG	J00544|Igj|16069|immunoglobulin joining chain	AK078865|Igj|16069|immunoglobulin joining chain	M90766|Igj|16069|immunoglobulin joining chain	BC006026|Igj|16069|immunoglobulin joining chain	AK160344|Igj|16069|immunoglobulin joining chain	NM_152839|Igj|16069|immunoglobulin joining chain
mm9_v1_chr3_+_87422672_87422672	1.76795	CACAGUG	BC079565|Arhgef11|213498|Rho guanine nucleotide exchange factor (GEF) 11	NM_001003912|Arhgef11|213498|Rho guanine nucleotide exchange factor (GEF) 11
mm9_v1_chr9_-_73781373_73781373	1.76488	CACAGUG	NM_001081153|Unc13c|208898|unc-13 homolog C (C. elegans)
mm9_v1_chr7_-_77511607_77511666	1.74102	CACAGUG	BC094360|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	NM_183261|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2
mm9_v1_chr8_-_83404377_83404428	1.71281	CACAGUG	BC007483|Gab1|14388|growth factor receptor bound protein 2-associated protein 1	NM_021356|Gab1|14388|growth factor receptor bound protein 2-associated protein 1	AK155423|Gab1|14388|growth factor receptor bound protein 2-associated protein 1	AK132176|Gab1|14388|growth factor receptor bound protein 2-associated protein 1
mm9_v1_chr2_+_35547418_35547513	1.71011	CACAGUG	AY305657|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	NM_001001602|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr14_-_19726121_19726326	1.70525	CACAGUG	BC016265|Ube2e2|218793|ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast)	NM_144839|Ube2e2|218793|ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast)
mm9_v1_chr2_+_35477498_35477550	1.63367	CACAGUG	AK147593|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	NM_001114124|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr17_-_82137708_82137731	1.62093	CACAGUG	AF004666|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_001112798|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_011406|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	U70033|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	AK084813|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene	AK085810|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene
mm9_v1_chr13_+_74146852_74146948	1.6104	CACAGUG	NM_182839|Tppp|72948|tubulin polymerization promoting protein	AK141543|Tppp|72948|tubulin polymerization promoting protein	BC054803|Tppp|72948|tubulin polymerization promoting protein
mm9_v1_chr7_+_56501558_56501558	1.59402	CACAGUG	AK039374|Nav2|78286|neuron navigator 2	NM_175272|Nav2|78286|neuron navigator 2
mm9_v1_chr15_+_58247016_58247063	1.58	CACAGUG	AK137324|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	NM_145959|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	BC070426|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed
mm9_v1_chr12_-_47919695_47919761	1.57541	CACAGUG	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr8_-_28285056_28285121	1.5502	CACAGUG	AK014696|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK089792|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	BC125400|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	BC132094|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK166735|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK086797|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK151024|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK030769|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	NM_001080813|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	NM_029423|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)
mm9_v1_chr4_+_137418151_137418162	1.54345	CACAGUG	AK134088|Ece1|230857|endothelin converting enzyme 1	NM_199307|Ece1|230857|endothelin converting enzyme 1
mm9_v1_chr7_-_107520359_107520405	1.53676	CACAGUG	AK146051|Ppme1|72590|protein phosphatase methylesterase 1	BC029064|Ppme1|72590|protein phosphatase methylesterase 1	BC014867|Ppme1|72590|protein phosphatase methylesterase 1	NM_028292|Ppme1|72590|protein phosphatase methylesterase 1
mm9_v1_chr18_+_64500017_64500040	1.53468	CACAGUG	AY242995|Onecut2|225631|one cut domain, family member 2	NM_194268|Onecut2|225631|one cut domain, family member 2	BC100750|Onecut2|225631|one cut domain, family member 2	BC100755|Onecut2|225631|one cut domain, family member 2	BC103668|Onecut2|225631|one cut domain, family member 2
mm9_v1_chr15_-_103170514_103170552	1.50778	CACAGUG	AF118566|Zfp385a|29813|zinc finger protein 385A	NM_013866|Zfp385a|29813|zinc finger protein 385A	AK137748|Zfp385a|29813|zinc finger protein 385A
mm9_v1_chr5_+_73882264_73882364	1.50504	CACAGUG	NM_001190733|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_178896|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	AK033559|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137627|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137628|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC144794|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC060213|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC108346|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr4_+_57580989_57581153	1.50232	CACAGUG	AK045344|Palm2|242481|paralemmin 2	NM_172868|Palm2|242481|paralemmin 2	BC113156|Palm2|242481|paralemmin 2
mm9_v1_chr2_+_27532692_27532866	1.49329	CACAGUG	AK144675|Rxra|20181|retinoid X receptor alpha	NM_011305|Rxra|20181|retinoid X receptor alpha	M84817|Rxra|20181|retinoid X receptor alpha	BC138800|Rxra|20181|retinoid X receptor alpha	BC138802|Rxra|20181|retinoid X receptor alpha	X66223|Rxra|20181|retinoid X receptor alpha	AK031034|Rxra|20181|retinoid X receptor alpha
mm9_v1_chr6_+_14851348_14851478	1.48705	CACAGUG	NM_053242|Foxp2|114142|forkhead box P2	AK051668|Foxp2|114142|forkhead box P2	AK085080|Foxp2|114142|forkhead box P2	AK080549|Foxp2|114142|forkhead box P2
mm9_v1_chr14_-_106296035_106296070	1.44066	CACAGUG	AF176905|Spry2|24064|sprouty homolog 2 (Drosophila)	NM_011897|Spry2|24064|sprouty homolog 2 (Drosophila)
mm9_v1_chr6_-_52154455_52154585	1.43899	CACAGUG	M36604|Hoxa5|15402|homeobox A5	X16840|Hoxa5|15402|homeobox A5	M28021|Hoxa5|15402|homeobox A5	NM_010453|Hoxa5|15402|homeobox A5
mm9_v1_chr4_+_101091875_101091893	1.43645	CACAGUG	AK134600|Ak4|11639|adenylate kinase 4	NM_001177602|Ak4|11639|adenylate kinase 4
mm9_v1_chr3_+_101180976_101181070	1.40873	CACAGUG	AK083000|Igsf3|78908|immunoglobulin superfamily, member 3	AK084011|Igsf3|78908|immunoglobulin superfamily, member 3	AK129151|Igsf3|78908|immunoglobulin superfamily, member 3	NM_207205|Igsf3|78908|immunoglobulin superfamily, member 3
mm9_v1_chr13_-_96020120_96020284	1.40822	CACAGUG	EF644173|Pde8b|218461|phosphodiesterase 8B	NM_172263|Pde8b|218461|phosphodiesterase 8B	BC032286|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr17_+_8994520_8994643	1.40792	CACAGUG	AK014090|Pde10a|23984|phosphodiesterase 10A	AY360383|Pde10a|23984|phosphodiesterase 10A	NM_011866|Pde10a|23984|phosphodiesterase 10A	AK147690|Pde10a|23984|phosphodiesterase 10A
mm9_v1_chr6_+_15135505_15135508	1.39558	CACAGUG	BC062926|Foxp2|114142|forkhead box P2	NM_212435|Foxp2|114142|forkhead box P2	BC058960|Foxp2|114142|forkhead box P2
mm9_v1_chr11_+_79153388_79153393	1.39218	CACAGUG	AK085050|Nf1|18015|neurofibromatosis 1	NM_010897|Nf1|18015|neurofibromatosis 1
mm9_v1_chr11_-_45979836_45979862	1.37471	CACAGUG	AK035736|Nipal4|214112|NIPA-like domain containing 4	BC139819|Nipal4|214112|NIPA-like domain containing 4	AK035561|Nipal4|214112|NIPA-like domain containing 4	NM_172524|Nipal4|214112|NIPA-like domain containing 4
mm9_v1_chr2_+_124436031_124436031	1.37259	CACAGUG	AB091532|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_172537|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199238|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199239|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199240|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199241|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr14_+_18493380_18493473	1.36517	CACAGUG	AK158826|Thrb|21834|thyroid hormone receptor beta	NM_001113417|Thrb|21834|thyroid hormone receptor beta
mm9_v1_chr17_+_26551909_26551909	1.35454	CACAGUG	DQ839448|Neurl1b|240055|neuralized homolog 1b (Drosophila)	GQ414760|Neurl1b|240055|neuralized homolog 1b (Drosophila)	NM_001081656|Neurl1b|240055|neuralized homolog 1b (Drosophila)
mm9_v1_chr6_-_100237331_100237351	1.35238	CACAGUG	BC138324|Rybp|56353|RING1 and YY1 binding protein	BC138325|Rybp|56353|RING1 and YY1 binding protein	BC053016|Rybp|56353|RING1 and YY1 binding protein	NM_019743|Rybp|56353|RING1 and YY1 binding protein
mm9_v1_chr2_+_181498036_181498036	1.35053	CACAGUG	BC063252|Myt1|17932|myelin transcription factor 1	NM_001171615|Myt1|17932|myelin transcription factor 1
mm9_v1_chrX_+_135448968_135449043	1.34943	CACAGUG	NM_013724|Nrk|27206|Nik related kinase	AK041377|Nrk|27206|Nik related kinase	BC068311|Nrk|27206|Nik related kinase	AB020741|Nrk|27206|Nik related kinase
mm9_v1_chr9_+_118835589_118835685	1.34124	CACAGUG	AJ344340|Ctdspl|69274|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	AK013115|Ctdspl|69274|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	NM_133710|Ctdspl|69274|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
mm9_v1_chr7_+_25421586_25421602	1.33206	CACAGUG	BC003749|Lypd3|72434|Ly6/Plaur domain containing 3	BC016549|Lypd3|72434|Ly6/Plaur domain containing 3	NM_133743|Lypd3|72434|Ly6/Plaur domain containing 3
mm9_v1_chr13_-_64376186_64376295	1.32167	CACAGUG	BC057357|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	BC049794|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	AK161345|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_172587|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chr11_-_51570335_51570335	1.28563	CACAGUG	NM_175255|Sec24a|77371|Sec24 related gene family, member A (S. cerevisiae)
mm9_v1_chr6_+_66846884_66846886	1.27092	CACAGUG	NM_001177558|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK166299|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12
mm9_v1_chr17_+_43938789_43938843	1.24642	CACAGUG	NM_207649|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr2_+_156246644_156246847	1.24162	CACAGUG	AK147611|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK147272|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK165479|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_001003815|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_013510|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK044744|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK154704|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AF061283|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	BC034751|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr2_-_168592528_168592700	1.22884	CACAGUG	AY463371|Sall4|99377|sal-like 4 (Drosophila)	AY463372|Sall4|99377|sal-like 4 (Drosophila)	AY463373|Sall4|99377|sal-like 4 (Drosophila)	AK049188|Sall4|99377|sal-like 4 (Drosophila)	AK145388|Sall4|99377|sal-like 4 (Drosophila)	BC099928|Sall4|99377|sal-like 4 (Drosophila)	BC053716|Sall4|99377|sal-like 4 (Drosophila)	NM_175303|Sall4|99377|sal-like 4 (Drosophila)	NM_201395|Sall4|99377|sal-like 4 (Drosophila)	NM_201396|Sall4|99377|sal-like 4 (Drosophila)
mm9_v1_chr9_-_44607274_44607334	1.22331	CACAGUG	AK090375|Tmem25|71687|transmembrane protein 25	AK165827|Tmem25|71687|transmembrane protein 25	AK002841|Tmem25|71687|transmembrane protein 25	NM_027865|Tmem25|71687|transmembrane protein 25	BC060057|Tmem25|71687|transmembrane protein 25	BC060243|Tmem25|71687|transmembrane protein 25	AK154206|Tmem25|71687|transmembrane protein 25	AK165199|Tmem25|71687|transmembrane protein 25
mm9_v1_chr10_+_98377759_98377828	1.22192	CACAGUG	AK133920|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	NM_026482|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	AK170163|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	BC024831|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	AK170926|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chr4_-_91066674_91066674	1.21754	CACAGUG	BC049125|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	BC058393|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207685|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr19_+_3851772_3851838	1.21623	CACAGUG	AK005057|Chka|12660|choline kinase alpha	NM_001025566|Chka|12660|choline kinase alpha	NM_013490|Chka|12660|choline kinase alpha	AK014174|Chka|12660|choline kinase alpha	BC060218|Chka|12660|choline kinase alpha	AK052056|Chka|12660|choline kinase alpha	AK053818|Chka|12660|choline kinase alpha	AK166465|Chka|12660|choline kinase alpha	AK166641|Chka|12660|choline kinase alpha
mm9_v1_chr17_+_44090139_44090183	1.20182	CACAGUG	BC049096|Rcan2|53901|regulator of calcineurin 2	NM_030598|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr3_+_131748252_131748264	1.19864	CACAGUG	AK031749|Dkk2|56811|dickkopf homolog 2 (Xenopus laevis)	NM_020265|Dkk2|56811|dickkopf homolog 2 (Xenopus laevis)	BC096448|Dkk2|56811|dickkopf homolog 2 (Xenopus laevis)
mm9_v1_chr18_-_36675458_36675463	1.19689	CACAGUG	AK164309|Hbegf|15200|heparin-binding EGF-like growth factor	NM_010415|Hbegf|15200|heparin-binding EGF-like growth factor
mm9_v1_chr7_-_75893927_75894127	1.19336	CACAGUG	DQ861996|Arrdc4|66412|arrestin domain containing 4	BC017528|Arrdc4|66412|arrestin domain containing 4	AK010022|Arrdc4|66412|arrestin domain containing 4	AK037198|Arrdc4|66412|arrestin domain containing 4	NM_001042592|Arrdc4|66412|arrestin domain containing 4	NM_025549|Arrdc4|66412|arrestin domain containing 4	AK010352|Arrdc4|66412|arrestin domain containing 4
mm9_v1_chr4_+_149656024_149656024	1.19257	CACAGUG	NM_001085492|Rere|68703|arginine glutamic acid dipeptide (RE) repeats
mm9_v1_chr10_-_78054639_78054708	1.19223	CACAGUG	AK004654|Syde1|71709|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	NM_027875|Syde1|71709|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
mm9_v1_chr16_-_4789869_4789937	1.19098	CACAGUG	AK017480|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK005157|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	BC004063|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK149939|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK150219|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK051560|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK031705|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	NM_025670|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene
mm9_v1_chr3_-_31209216_31209240	1.18502	CACAGUG	AK173217|Slc7a14|241919|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	BC061928|Slc7a14|241919|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	AK044448|Slc7a14|241919|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	NM_172861|Slc7a14|241919|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14
mm9_v1_chr2_+_25036276_25036300	1.18068	CACAGUG	AY046077|Nrarp|67122|Notch-regulated ankyrin repeat protein	NM_025980|Nrarp|67122|Notch-regulated ankyrin repeat protein	BC020293|Nrarp|67122|Notch-regulated ankyrin repeat protein	BC048088|Nrarp|67122|Notch-regulated ankyrin repeat protein
mm9_v1_chr17_+_75578120_75578285	1.17087	CACAGUG	AK036047|Ltbp1|268977|latent transforming growth factor beta binding protein 1	NM_206958|Ltbp1|268977|latent transforming growth factor beta binding protein 1	AF280604|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chr18_-_23197156_23197163	1.16578	CACAGUG	BC056377|Nol4|319211|nucleolar protein 4	NM_001161483|Nol4|319211|nucleolar protein 4
mm9_v1_chr13_+_31650033_31650038	1.16485	CACAGUG	AK147202|Foxq1|15220|forkhead box Q1	NM_008239|Foxq1|15220|forkhead box Q1
mm9_v1_chr15_-_96886327_96886398	1.15727	CACAGUG	AK164292|Slc38a4|69354|solute carrier family 38, member 4	AK167539|Slc38a4|69354|solute carrier family 38, member 4	AK051023|Slc38a4|69354|solute carrier family 38, member 4	NM_027052|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr17_+_57129686_57129814	1.15206	CACAGUG	NM_017393|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK145765|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	BC001998|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AJ005253|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK004024|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK168053|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK002238|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK147719|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)
mm9_v1_chr4_-_91038729_91038745	1.14813	CACAGUG	U29088|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_010486|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207686|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr10_+_83006673_83006768	1.14008	CACAGUG	NM_001033375|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK145000|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK166233|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK043911|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK038582|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene
mm9_v1_chr11_-_76660476_76660569	1.1371	CACAGUG	AK142583|Cpd|12874|carboxypeptidase D	AK134907|Cpd|12874|carboxypeptidase D	AK137737|Cpd|12874|carboxypeptidase D	D85391|Cpd|12874|carboxypeptidase D	NM_007754|Cpd|12874|carboxypeptidase D
mm9_v1_chr11_-_68200284_68200327	1.1126	CACAGUG	NM_008744|Ntn1|18208|netrin 1
mm9_v1_chr1_+_154246959_154247050	1.10492	CACAGUG	AK085716|Glt25d2|269132|glycosyltransferase 25 domain containing 2	AK052838|Glt25d2|269132|glycosyltransferase 25 domain containing 2	NM_177756|Glt25d2|269132|glycosyltransferase 25 domain containing 2	AK134084|Glt25d2|269132|glycosyltransferase 25 domain containing 2	BC068118|Glt25d2|269132|glycosyltransferase 25 domain containing 2
mm9_v1_chr19_-_37281762_37281782	1.10478	CACAGUG	BC128377|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	AY313774|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	NM_198300|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3
mm9_v1_chr6_+_38383918_38383949	1.10107	CACAGUG	NM_177185|Ubn2|320538|ubinuclein 2	AK013733|Ubn2|320538|ubinuclein 2	BC051458|Ubn2|320538|ubinuclein 2
mm9_v1_chr5_-_103640272_103640352	1.08915	CACAGUG	AK036275|Mapk10|26414|mitogen-activated protein kinase 10	BC046625|Mapk10|26414|mitogen-activated protein kinase 10	AK163206|Mapk10|26414|mitogen-activated protein kinase 10	AK076990|Mapk10|26414|mitogen-activated protein kinase 10	BC026697|Mapk10|26414|mitogen-activated protein kinase 10	AK082242|Mapk10|26414|mitogen-activated protein kinase 10	NM_001081567|Mapk10|26414|mitogen-activated protein kinase 10	NM_009158|Mapk10|26414|mitogen-activated protein kinase 10
mm9_v1_chr10_+_7400978_7401034	1.08109	CACAGUG	AK038612|Lats1|16798|large tumor suppressor	NM_010690|Lats1|16798|large tumor suppressor	BC158123|Lats1|16798|large tumor suppressor
mm9_v1_chr1_-_145624156_145624181	1.07276	CACAGUG	AK076167|Trove2|20822|TROVE domain family, member 2	NM_013835|Trove2|20822|TROVE domain family, member 2
mm9_v1_chr6_+_66846377_66846490	1.07024	CACAGUG	NM_001177556|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	NM_001177557|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	NM_001177559|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	NM_001177560|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	NM_025278|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK005561|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	BC040685|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK162342|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK166035|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK159872|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK148765|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK033422|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12
mm9_v1_chr18_+_10325174_10325177	1.06808	CACAGUG	AK142556|Greb1l|381157|growth regulation by estrogen in breast cancer-like	NM_001083628|Greb1l|381157|growth regulation by estrogen in breast cancer-like
mm9_v1_chr7_+_56214442_56214485	1.05589	CACAGUG	AK019901|Nav2|78286|neuron navigator 2	NM_001111016|Nav2|78286|neuron navigator 2	AK084063|Nav2|78286|neuron navigator 2	AK162444|Nav2|78286|neuron navigator 2
mm9_v1_chr11_-_87800799_87801034	1.05466	CACAGUG	AK028319|Dynll2|68097|dynein light chain LC8-type 2	BC011289|Dynll2|68097|dynein light chain LC8-type 2	BC058797|Dynll2|68097|dynein light chain LC8-type 2	BC040822|Dynll2|68097|dynein light chain LC8-type 2	AK011284|Dynll2|68097|dynein light chain LC8-type 2	AK160114|Dynll2|68097|dynein light chain LC8-type 2	AK049645|Dynll2|68097|dynein light chain LC8-type 2	AK078434|Dynll2|68097|dynein light chain LC8-type 2	AK169212|Dynll2|68097|dynein light chain LC8-type 2	NM_026556|Dynll2|68097|dynein light chain LC8-type 2
mm9_v1_chr6_+_146673451_146673548	1.05177	CACAGUG	NM_172734|Stk38l|232533|serine/threonine kinase 38 like	AK052288|Stk38l|232533|serine/threonine kinase 38 like	AK045971|Stk38l|232533|serine/threonine kinase 38 like	AY223819|Stk38l|232533|serine/threonine kinase 38 like
mm9_v1_chr5_-_110877489_110877534	1.04411	CACAGUG	BC059932|Fbrsl1|381668|fibrosin-like 1	NM_001142642|Fbrsl1|381668|fibrosin-like 1
mm9_v1_chr1_-_57028171_57028177	1.04159	CACAGUG	AF319623|Satb2|212712|special AT-rich sequence binding protein 2	NM_139146|Satb2|212712|special AT-rich sequence binding protein 2
mm9_v1_chr6_+_114232618_114232629	1.03146	CACAGUG	NM_178703|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm9_v1_chr1_+_62749850_62750115	1.03129	CACAGUG	NM_001077403|Nrp2|18187|neuropilin 2	NM_001077404|Nrp2|18187|neuropilin 2	NM_001077405|Nrp2|18187|neuropilin 2	NM_001077406|Nrp2|18187|neuropilin 2	NM_001077407|Nrp2|18187|neuropilin 2	NM_010939|Nrp2|18187|neuropilin 2	AK149643|Nrp2|18187|neuropilin 2	AK051873|Nrp2|18187|neuropilin 2
mm9_v1_chr18_+_43367236_43367350	1.01555	CACAGUG	AK042599|Stk32a|269019|serine/threonine kinase 32A	BC055002|Stk32a|269019|serine/threonine kinase 32A	AK044474|Stk32a|269019|serine/threonine kinase 32A	AK036266|Stk32a|269019|serine/threonine kinase 32A	NM_178749|Stk32a|269019|serine/threonine kinase 32A
mm9_v1_chr6_-_92431385_92431385	1.01257	CACAGUG	AK020123|Prickle2|243548|prickle homolog 2 (Drosophila)	AK032631|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134460|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr8_-_73905790_73905902	0.985187	CACAGUG	AK131941|Nr2f6|13864|nuclear receptor subfamily 2, group F, member 6	NM_010150|Nr2f6|13864|nuclear receptor subfamily 2, group F, member 6
mm9_v1_chr4_-_91042997_91043190	0.984439	CACAGUG	AK149201|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	AK141919|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_001177883|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr11_-_87811778_87811799	0.97661	CACAGUG	BC049621|Dynll2|68097|dynein light chain LC8-type 2	AK006876|Dynll2|68097|dynein light chain LC8-type 2	NM_001168471|Dynll2|68097|dynein light chain LC8-type 2
mm9_v1_chr11_+_53333270_53333474	0.968958	CACAGUG	BC059248|Sept8|20362|septin 8	NM_033144|Sept8|20362|septin 8	AB093215|Sept8|20362|septin 8	AK144178|Sept8|20362|septin 8	BC049819|Sept8|20362|septin 8	BC037707|Sept8|20362|septin 8
mm9_v1_chr9_-_62996767_62996767	0.964804	CACAGUG	AK029916|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163758|Skor1|207667|SKI family transcriptional corepressor 1
mm9_v1_chr8_+_106625524_106625609	0.963203	CACAGUG	NM_009868|Cdh5|12562|cadherin 5	AK164474|Cdh5|12562|cadherin 5	D63942|Cdh5|12562|cadherin 5	AK167620|Cdh5|12562|cadherin 5	BC054790|Cdh5|12562|cadherin 5	X83930|Cdh5|12562|cadherin 5
mm9_v1_chrX_+_147778717_147778787	0.961843	CACAGUG	AK030477|Fam120c|207375|family with sequence similarity 120, member C	AK086058|Fam120c|207375|family with sequence similarity 120, member C	AK156920|Fam120c|207375|family with sequence similarity 120, member C	AY150023|Fam120c|207375|family with sequence similarity 120, member C	AY150024|Fam120c|207375|family with sequence similarity 120, member C	BC137973|Fam120c|207375|family with sequence similarity 120, member C	BC171940|Fam120c|207375|family with sequence similarity 120, member C	NM_198105|Fam120c|207375|family with sequence similarity 120, member C	AK136727|Fam120c|207375|family with sequence similarity 120, member C	AK166381|Fam120c|207375|family with sequence similarity 120, member C
mm9_v1_chr8_+_71404452_71404464	0.95556	CACAGUG	AK080872|Lpl|16956|lipoprotein lipase	AK150328|Lpl|16956|lipoprotein lipase	AK150488|Lpl|16956|lipoprotein lipase	AK150505|Lpl|16956|lipoprotein lipase	AK150532|Lpl|16956|lipoprotein lipase	AK150577|Lpl|16956|lipoprotein lipase	AK150585|Lpl|16956|lipoprotein lipase	AK150593|Lpl|16956|lipoprotein lipase	AK150691|Lpl|16956|lipoprotein lipase	AK150984|Lpl|16956|lipoprotein lipase	AK150990|Lpl|16956|lipoprotein lipase	AK151006|Lpl|16956|lipoprotein lipase	AK151049|Lpl|16956|lipoprotein lipase	AK151093|Lpl|16956|lipoprotein lipase	AK151099|Lpl|16956|lipoprotein lipase	AK151105|Lpl|16956|lipoprotein lipase	AK151112|Lpl|16956|lipoprotein lipase	AK151216|Lpl|16956|lipoprotein lipase	AK151563|Lpl|16956|lipoprotein lipase	AK151679|Lpl|16956|lipoprotein lipase	AK151698|Lpl|16956|lipoprotein lipase	AK151727|Lpl|16956|lipoprotein lipase	AK151772|Lpl|16956|lipoprotein lipase	AK151866|Lpl|16956|lipoprotein lipase	AK151870|Lpl|16956|lipoprotein lipase	AK151872|Lpl|16956|lipoprotein lipase	AK152014|Lpl|16956|lipoprotein lipase	AK152035|Lpl|16956|lipoprotein lipase	AK152049|Lpl|16956|lipoprotein lipase	AK152079|Lpl|16956|lipoprotein lipase	AK152238|Lpl|16956|lipoprotein lipase	AK152350|Lpl|16956|lipoprotein lipase	AK152657|Lpl|16956|lipoprotein lipase	AK152706|Lpl|16956|lipoprotein lipase	AK152775|Lpl|16956|lipoprotein lipase	AK152869|Lpl|16956|lipoprotein lipase	AK152956|Lpl|16956|lipoprotein lipase	AK153006|Lpl|16956|lipoprotein lipase	AK153148|Lpl|16956|lipoprotein lipase	AK153242|Lpl|16956|lipoprotein lipase	AK153425|Lpl|16956|lipoprotein lipase	AK153428|Lpl|16956|lipoprotein lipase	AK155917|Lpl|16956|lipoprotein lipase	AK159268|Lpl|16956|lipoprotein lipase	NM_008509|Lpl|16956|lipoprotein lipase	AK150355|Lpl|16956|lipoprotein lipase	AK152481|Lpl|16956|lipoprotein lipase	AK170486|Lpl|16956|lipoprotein lipase	AK017272|Lpl|16956|lipoprotein lipase	AK150375|Lpl|16956|lipoprotein lipase	AK150646|Lpl|16956|lipoprotein lipase	AK152251|Lpl|16956|lipoprotein lipase	AK154419|Lpl|16956|lipoprotein lipase	BC003305|Lpl|16956|lipoprotein lipase
mm9_v1_chr1_-_33814590_33814594	0.95229	CACAGUG	BC016230|Bag2|213539|BCL2-associated athanogene 2	NM_145392|Bag2|213539|BCL2-associated athanogene 2
mm9_v1_chr6_-_92484838_92484854	0.950308	CACAGUG	AK147576|Prickle2|243548|prickle homolog 2 (Drosophila)	AK147628|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134459|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chrX_-_12339096_12339247	0.948338	CACAGUG	AB019028|Med14|26896|mediator complex subunit 14	NM_001048208|Med14|26896|mediator complex subunit 14	NM_012005|Med14|26896|mediator complex subunit 14	BC065072|Med14|26896|mediator complex subunit 14
mm9_v1_chr17_-_25073897_25073943	0.948264	CACAGUG	BC068312|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AB005662|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AF262046|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AF178637|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	BC065105|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163447|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163448|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163449|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163450|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163451|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163453|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_013931|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3
mm9_v1_chr2_-_136942066_136942255	0.941035	CACAGUG	NM_013822|Jag1|16449|jagged 1	AK137092|Jag1|16449|jagged 1	AF171092|Jag1|16449|jagged 1
mm9_v1_chr8_+_63702967_63703040	0.936732	CACAGUG	NM_021506|Sh3rf1|59009|SH3 domain containing ring finger 1	BC060113|Sh3rf1|59009|SH3 domain containing ring finger 1	BC060696|Sh3rf1|59009|SH3 domain containing ring finger 1	AK088003|Sh3rf1|59009|SH3 domain containing ring finger 1	AK148137|Sh3rf1|59009|SH3 domain containing ring finger 1
mm9_v1_chr13_-_64349830_64349845	0.934981	CACAGUG	AK041155|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_001122989|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chr14_+_76354807_76354815	0.933895	CACAGUG	AK004465|Kctd4|67516|potassium channel tetramerisation domain containing 4	NM_026214|Kctd4|67516|potassium channel tetramerisation domain containing 4	AK008741|Kctd4|67516|potassium channel tetramerisation domain containing 4
mm9_v1_chr6_-_92656148_92656177	0.925863	CACAGUG	BC099897|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001081146|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr1_-_191167582_191167722	0.915849	CACAGUG	NM_010607|Kcnk2|16526|potassium channel, subfamily K, member 2	U73488|Kcnk2|16526|potassium channel, subfamily K, member 2	AK080342|Kcnk2|16526|potassium channel, subfamily K, member 2
mm9_v1_chr10_-_79017835_79017849	0.906149	CACAGUG	BC067013|Mier2|70427|mesoderm induction early response 1, family member 2	NM_027422|Mier2|70427|mesoderm induction early response 1, family member 2	AK154672|Mier2|70427|mesoderm induction early response 1, family member 2
mm9_v1_chr6_+_4853319_4853431	0.905902	CACAGUG	AB091828|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	NM_181595|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	AK158559|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	BC053748|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm9_v1_chr10_+_52410306_52410508	0.905016	CACAGUG	NM_178675|Slc35f1|215085|solute carrier family 35, member F1	AK038601|Slc35f1|215085|solute carrier family 35, member F1	AK053426|Slc35f1|215085|solute carrier family 35, member F1	AK139331|Slc35f1|215085|solute carrier family 35, member F1	AK048957|Slc35f1|215085|solute carrier family 35, member F1	AK165021|Slc35f1|215085|solute carrier family 35, member F1	AK053545|Slc35f1|215085|solute carrier family 35, member F1	AK083768|Slc35f1|215085|solute carrier family 35, member F1	AK166268|Slc35f1|215085|solute carrier family 35, member F1	BC059075|Slc35f1|215085|solute carrier family 35, member F1	AK163806|Slc35f1|215085|solute carrier family 35, member F1
mm9_v1_chr10_+_110182506_110182701	0.904748	CACAGUG	AK051521|E2f7|52679|E2F transcription factor 7	NM_178609|E2f7|52679|E2F transcription factor 7	AK031078|E2f7|52679|E2F transcription factor 7	AK041481|E2f7|52679|E2F transcription factor 7	AY463359|E2f7|52679|E2F transcription factor 7	AK143686|E2f7|52679|E2F transcription factor 7	BC145429|E2f7|52679|E2F transcription factor 7	BC150772|E2f7|52679|E2F transcription factor 7	AK045040|E2f7|52679|E2F transcription factor 7
mm9_v1_chr1_-_58642994_58643176	0.903373	CACAGUG	AK052638|Fam126b|213056|family with sequence similarity 126, member B	BC068302|Fam126b|213056|family with sequence similarity 126, member B	AK144602|Fam126b|213056|family with sequence similarity 126, member B	BC049806|Fam126b|213056|family with sequence similarity 126, member B	AK168372|Fam126b|213056|family with sequence similarity 126, member B	NM_172513|Fam126b|213056|family with sequence similarity 126, member B
mm9_v1_chr2_+_156301543_156301577	0.901455	CACAGUG	NM_001006664|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr10_-_62342761_62342761	0.897279	CACAGUG	GU079948|Tet1|52463|tet oncogene 1	NM_027384|Tet1|52463|tet oncogene 1
mm9_v1_chr3_-_62409061_62409061	0.893354	CACAGUG	AK136826|Gpr149|229357|G protein-coupled receptor 149	NM_177346|Gpr149|229357|G protein-coupled receptor 149
mm9_v1_chr1_+_91351373_91351428	0.887983	CACAGUG	AK147503|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	NM_001037136|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	NM_178119|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	AK046523|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	AK129289|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm9_v1_chr4_-_122638401_122638432	0.886534	CACAGUG	BC060526|Mfsd2a|76574|major facilitator superfamily domain containing 2A	BC046793|Mfsd2a|76574|major facilitator superfamily domain containing 2A	AK006096|Mfsd2a|76574|major facilitator superfamily domain containing 2A	NM_029662|Mfsd2a|76574|major facilitator superfamily domain containing 2A
mm9_v1_chr6_+_115311078_115311238	0.881603	CACAGUG	U01664|Pparg|19016|peroxisome proliferator activated receptor gamma	NM_001127330|Pparg|19016|peroxisome proliferator activated receptor gamma
mm9_v1_chr3_+_105255247_105255337	0.879454	CACAGUG	NM_001039347|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AK147574|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr1_+_134195202_134195202	0.878958	CACAGUG	AK080356|Klhdc8a|213417|kelch domain containing 8A	NM_144810|Klhdc8a|213417|kelch domain containing 8A
mm9_v1_chr15_-_103070227_103070257	0.874589	CACAGUG	BC004707|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001076789|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr6_-_92517359_92517359	0.867629	CACAGUG	BC050793|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134461|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr19_-_34952377_34952406	0.863076	CACAGUG	AF200357|Pank1|75735|pantothenate kinase 1	AK050222|Pank1|75735|pantothenate kinase 1	NM_023792|Pank1|75735|pantothenate kinase 1
mm9_v1_chr4_-_57314708_57314708	0.857451	CACAGUG	AK052928|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3	NM_011207|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3
mm9_v1_chr3_-_126646303_126646303	0.853127	CACAGUG	BC043123|Ank2|109676|ankyrin 2, brain	NM_001034168|Ank2|109676|ankyrin 2, brain
mm9_v1_chr17_-_31992708_31992780	0.852533	CACAGUG	U11494|Sik1|17691|salt inducible kinase 1	AK141817|Sik1|17691|salt inducible kinase 1	NM_010831|Sik1|17691|salt inducible kinase 1	AK172427|Sik1|17691|salt inducible kinase 1
mm9_v1_chr3_-_126701367_126701380	0.85172	CACAGUG	AK032060|Ank2|109676|ankyrin 2, brain	NM_178655|Ank2|109676|ankyrin 2, brain
mm9_v1_chr15_-_103045710_103045798	0.851181	CACAGUG	X99641|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK018349|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK030442|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK032975|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK030366|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001110216|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_007626|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr1_-_191167231_191167231	0.845033	CACAGUG	NM_001159850|Kcnk2|16526|potassium channel, subfamily K, member 2
mm9_v1_chrX_-_159081510_159081550	0.8424	CACAGUG	AY263368|Reps2|194590|RALBP1 associated Eps domain containing protein 2	NM_178256|Reps2|194590|RALBP1 associated Eps domain containing protein 2
mm9_v1_chr15_-_77949709_77949709	0.835015	CACAGUG	AF077739|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2	NM_007583|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2
mm9_v1_chr10_+_93498745_93498948	0.833034	CACAGUG	AK044341|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6	NM_053072|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6	AK173157|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6	BC139019|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6	BC139022|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6
mm9_v1_chr4_+_64785207_64785207	0.817315	CACAGUG	NM_021362|Pappa|18491|pregnancy-associated plasma protein A
mm9_v1_chr11_+_95528269_95528342	0.814943	CACAGUG	NM_008831|Phb|18673|prohibitin	AK178178|Phb|18673|prohibitin	AK168248|Phb|18673|prohibitin	AK002714|Phb|18673|prohibitin	AK152933|Phb|18673|prohibitin	AK150956|Phb|18673|prohibitin	AK151073|Phb|18673|prohibitin	AK010619|Phb|18673|prohibitin	AK160490|Phb|18673|prohibitin	AK168656|Phb|18673|prohibitin	X78682|Phb|18673|prohibitin
mm9_v1_chr8_-_72877137_72877227	0.801906	CACAGUG	AK148196|Upf1|19704|UPF1 regulator of nonsense transcripts homolog (yeast)	BC056442|Upf1|19704|UPF1 regulator of nonsense transcripts homolog (yeast)	NM_001122829|Upf1|19704|UPF1 regulator of nonsense transcripts homolog (yeast)	NM_030680|Upf1|19704|UPF1 regulator of nonsense transcripts homolog (yeast)	AF182947|Upf1|19704|UPF1 regulator of nonsense transcripts homolog (yeast)
mm9_v1_chr10_-_108447674_108447736	0.801881	CACAGUG	BC042519|Syt1|20979|synaptotagmin I	NM_009306|Syt1|20979|synaptotagmin I
mm9_v1_chr17_+_75404865_75404880	0.7964	CACAGUG	NM_019919|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chr10_+_106708886_106708980	0.793309	CACAGUG	NM_001033223|Lin7a|108030|lin-7 homolog A (C. elegans)	NM_001039354|Lin7a|108030|lin-7 homolog A (C. elegans)	BC105965|Lin7a|108030|lin-7 homolog A (C. elegans)	AK160671|Lin7a|108030|lin-7 homolog A (C. elegans)	BC029721|Lin7a|108030|lin-7 homolog A (C. elegans)
mm9_v1_chr17_+_29686744_29686746	0.79152	CACAGUG	BC045600|Tbc1d22b|381085|TBC1 domain family, member 22B	NM_198647|Tbc1d22b|381085|TBC1 domain family, member 22B
mm9_v1_chr18_+_23573908_23573935	0.7913	CACAGUG	NM_010087|Dtna|13527|dystrobrevin alpha	NM_207650|Dtna|13527|dystrobrevin alpha
mm9_v1_chr8_+_111238543_111238543	0.785244	CACAGUG	D26046|Zfhx3|11906|zinc finger homeobox 3	NM_007496|Zfhx3|11906|zinc finger homeobox 3
mm9_v1_chr9_+_66561492_66561635	0.782219	CACAGUG	NM_178396|Car12|76459|carbonic anyhydrase 12	AK052639|Car12|76459|carbonic anyhydrase 12	AK157977|Car12|76459|carbonic anyhydrase 12	AK037694|Car12|76459|carbonic anyhydrase 12	AK166132|Car12|76459|carbonic anyhydrase 12	BC031385|Car12|76459|carbonic anyhydrase 12	BC035941|Car12|76459|carbonic anyhydrase 12	AK170859|Car12|76459|carbonic anyhydrase 12	BC033432|Car12|76459|carbonic anyhydrase 12
mm9_v1_chr7_-_135605026_135605189	0.781626	CACAGUG	NM_009383|Tial1|21843|Tia1 cytotoxic granule-associated RNA binding protein-like 1	AK132677|Tial1|21843|Tia1 cytotoxic granule-associated RNA binding protein-like 1
mm9_v1_chr6_-_24905939_24906124	0.781102	CACAGUG	BC147241|Tmem229a|319832|transmembrane protein 229A	BC147242|Tmem229a|319832|transmembrane protein 229A	AK140056|Tmem229a|319832|transmembrane protein 229A	AK087465|Tmem229a|319832|transmembrane protein 229A	NM_177013|Tmem229a|319832|transmembrane protein 229A
mm9_v1_chr6_-_52184909_52184937	0.777187	CACAGUG	BC050839|Hoxa10|15395|homeobox A10	L08757|Hoxa10|15395|homeobox A10	NM_008263|Hoxa10|15395|homeobox A10
mm9_v1_chr2_-_68309996_68310080	0.771891	CACAGUG	AK017292|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AF099988|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	BC064443|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	NM_016866|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AK148456|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)
mm9_v1_chr10_+_105907394_105907408	0.76889	CACAGUG	BC065133|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	EU568870|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	NM_177373|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK030621|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK220491|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm9_v1_chr7_+_149135647_149135669	0.76681	CACAGUG	AY660739|Brsk2|75770|BR serine/threonine kinase 2	NM_029426|Brsk2|75770|BR serine/threonine kinase 2
mm9_v1_chr9_-_44773594_44773682	0.764149	CACAGUG	BC025043|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028721|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC006649|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC021406|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028850|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK172893|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	NM_145400|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)
mm9_v1_chr14_+_18814157_18814390	0.763855	CACAGUG	BC089035|Thrb|21834|thyroid hormone receptor beta	NM_009380|Thrb|21834|thyroid hormone receptor beta	BC119553|Thrb|21834|thyroid hormone receptor beta	BC119552|Thrb|21834|thyroid hormone receptor beta	S62758|Thrb|21834|thyroid hormone receptor beta	AB221613|Thrb|21834|thyroid hormone receptor beta
mm9_v1_chr3_+_109143558_109143678	0.758296	CACAGUG	AK033253|Vav3|57257|vav 3 oncogene	NM_020505|Vav3|57257|vav 3 oncogene	AK041249|Vav3|57257|vav 3 oncogene
mm9_v1_chr2_+_31428244_31428356	0.755022	CACAGUG	NM_001033389|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK166081|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK137035|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK145377|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK166478|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK167671|Fubp3|320267|far upstream element (FUSE) binding protein 3
mm9_v1_chr10_-_105011439_105011534	0.753654	CACAGUG	BC092226|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	AK052344|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	AK135552|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	NM_177368|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2
mm9_v1_chr10_-_30375572_30375672	0.74621	CACAGUG	BC080742|Ncoa7|211329|nuclear receptor coactivator 7	AK033503|Ncoa7|211329|nuclear receptor coactivator 7	AK171679|Ncoa7|211329|nuclear receptor coactivator 7	BC058572|Ncoa7|211329|nuclear receptor coactivator 7	BC080670|Ncoa7|211329|nuclear receptor coactivator 7	BC049997|Ncoa7|211329|nuclear receptor coactivator 7	AK165098|Ncoa7|211329|nuclear receptor coactivator 7	AK042369|Ncoa7|211329|nuclear receptor coactivator 7	EF602028|Ncoa7|211329|nuclear receptor coactivator 7	NM_001111267|Ncoa7|211329|nuclear receptor coactivator 7
mm9_v1_chr15_+_66722913_66722954	0.743463	CACAGUG	AK013300|Wisp1|22402|WNT1 inducible signaling pathway protein 1	AK148457|Wisp1|22402|WNT1 inducible signaling pathway protein 1	BC048791|Wisp1|22402|WNT1 inducible signaling pathway protein 1	AB004873|Wisp1|22402|WNT1 inducible signaling pathway protein 1	NM_018865|Wisp1|22402|WNT1 inducible signaling pathway protein 1
mm9_v1_chr18_-_60872888_60873042	0.740551	CACAGUG	AF049894|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	AF074926|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	BC066098|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	BC079561|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	NM_008306|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm9_v1_chr7_-_30290470_30290595	0.738917	CACAGUG	AK171182|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3	AK154121|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3	NM_001081028|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3
mm9_v1_chr14_-_46008425_46008617	0.734835	CACAGUG	BC092047|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	BC031116|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK018499|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK050266|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AJ001006|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	NM_019425|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007722|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK167870|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK168074|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007647|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK008566|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK002466|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK028693|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007764|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK011098|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1
mm9_v1_chr7_-_26460180_26460184	0.722038	CACAGUG	AK079312|Tmem91|320208|transmembrane protein 91	NM_177102|Tmem91|320208|transmembrane protein 91
mm9_v1_chr2_+_146047656_146047846	0.718441	CACAGUG	BC051240|Insm1|53626|insulinoma-associated 1	NM_016889|Insm1|53626|insulinoma-associated 1	AF044669|Insm1|53626|insulinoma-associated 1	BC082809|Insm1|53626|insulinoma-associated 1
mm9_v1_chr4_+_48598013_48598089	0.698655	CACAGUG	BC057598|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1	NM_021436|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1
mm9_v1_chr2_+_69561103_69561149	0.696478	CACAGUG	AK135178|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC150694|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	AK134121|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	NM_001081086|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC027420|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chr2_-_156904966_156905000	0.691445	CACAGUG	AK147227|9830001H06Rik|320706|RIKEN cDNA 9830001H06 gene	NM_001164663|9830001H06Rik|320706|RIKEN cDNA 9830001H06 gene
mm9_v1_chr1_+_59538966_59539075	0.688692	CACAGUG	NM_008057|Fzd7|14369|frizzled homolog 7 (Drosophila)	BC063077|Fzd7|14369|frizzled homolog 7 (Drosophila)
mm9_v1_chr5_+_144861227_144861325	0.672637	CACAGUG	AK158724|Lmtk2|231876|lemur tyrosine kinase 2	NM_001081109|Lmtk2|231876|lemur tyrosine kinase 2
mm9_v1_chr18_-_72510670_72510722	0.669307	CACAGUG	AK157715|Dcc|13176|deleted in colorectal carcinoma	AK090377|Dcc|13176|deleted in colorectal carcinoma	NM_007831|Dcc|13176|deleted in colorectal carcinoma
mm9_v1_chr6_+_115372083_115372128	0.665026	CACAGUG	AY208183|Pparg|19016|peroxisome proliferator activated receptor gamma	AY208184|Pparg|19016|peroxisome proliferator activated receptor gamma	AY243585|Pparg|19016|peroxisome proliferator activated receptor gamma	BC021798|Pparg|19016|peroxisome proliferator activated receptor gamma	NM_011146|Pparg|19016|peroxisome proliferator activated receptor gamma	U09138|Pparg|19016|peroxisome proliferator activated receptor gamma	EF062476|Pparg|19016|peroxisome proliferator activated receptor gamma	CT010340|Pparg|19016|peroxisome proliferator activated receptor gamma
mm9_v1_chr4_-_136391849_136391926	0.663035	CACAGUG	BC043088|Ephb2|13844|Eph receptor B2	NM_010142|Ephb2|13844|Eph receptor B2	BC062924|Ephb2|13844|Eph receptor B2	AK017630|Ephb2|13844|Eph receptor B2	L25890|Ephb2|13844|Eph receptor B2
mm9_v1_chr12_-_51750204_51750242	0.661963	CACAGUG	NM_008858|Prkd1|18760|protein kinase D1
mm9_v1_chr4_-_133574655_133574730	0.66025	CACAGUG	AB221669|Lin28a|83557|lin-28 homolog A (C. elegans)	BC068304|Lin28a|83557|lin-28 homolog A (C. elegans)	AF521097|Lin28a|83557|lin-28 homolog A (C. elegans)	NM_145833|Lin28a|83557|lin-28 homolog A (C. elegans)
mm9_v1_chr19_-_34953810_34953944	0.653007	CACAGUG	AK017345|Pank1|75735|pantothenate kinase 1	AF347700|Pank1|75735|pantothenate kinase 1	NM_001114339|Pank1|75735|pantothenate kinase 1
mm9_v1_chr5_+_36235967_36236084	0.651259	CACAGUG	BC050814|Afap1|70292|actin filament associated protein 1	NM_027373|Afap1|70292|actin filament associated protein 1	AK161385|Afap1|70292|actin filament associated protein 1	AK080756|Afap1|70292|actin filament associated protein 1	AK129483|Afap1|70292|actin filament associated protein 1	AK147706|Afap1|70292|actin filament associated protein 1
mm9_v1_chr1_+_168184269_168184413	0.649327	CACAGUG	NM_001164528|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024494|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024495|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024496|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024497|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024498|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024499|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024500|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024501|Ildr2|100039795|immunoglobulin-like domain containing receptor 2
mm9_v1_chr15_+_99800504_99800504	0.648096	CACAGUG	AK139636|Larp4|207214|La ribonucleoprotein domain family, member 4	NM_001080948|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr2_-_154718506_154718641	0.646012	CACAGUG	BC113766|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	BC003848|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK019156|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK143553|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK166862|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK145401|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK012338|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	BC100539|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK076056|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK011503|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK042004|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK166866|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK145434|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	NM_026030|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)
mm9_v1_chr3_+_95985065_95985205	0.645665	CACAGUG	AK080525|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK144166|Sv2a|64051|synaptic vesicle glycoprotein 2 a	BC046587|Sv2a|64051|synaptic vesicle glycoprotein 2 a	NM_022030|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK080502|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK028318|Sv2a|64051|synaptic vesicle glycoprotein 2 a
mm9_v1_chr6_+_116288075_116288140	0.638643	CACAGUG	BC053090|March8|71779|membrane-associated ring finger (C3HC4) 8	NM_027920|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr12_-_76836549_76836721	0.638624	CACAGUG	AF415215|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	BC037592|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	BC026814|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AF247177|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AK154116|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AK043586|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AK149860|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	NM_030750|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1
mm9_v1_chr11_-_87800086_87800086	0.636502	CACAGUG	NM_001168472|Dynll2|68097|dynein light chain LC8-type 2
mm9_v1_chr13_-_52626065_52626204	0.634729	CACAGUG	AK136096|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	AK136101|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	NM_001024474|Diras2|68203|DIRAS family, GTP-binding RAS-like 2
mm9_v1_chr4_+_34011567_34011625	0.63127	CACAGUG	BC075644|Cnr1|12801|cannabinoid receptor 1 (brain)	BC070447|Cnr1|12801|cannabinoid receptor 1 (brain)	NM_007726|Cnr1|12801|cannabinoid receptor 1 (brain)	AY522554|Cnr1|12801|cannabinoid receptor 1 (brain)
mm9_v1_chr16_+_78301923_78302076	0.625356	CACAGUG	NM_001025192|Cxadr|13052|coxsackie virus and adenovirus receptor	NM_009988|Cxadr|13052|coxsackie virus and adenovirus receptor	AK004908|Cxadr|13052|coxsackie virus and adenovirus receptor	AK145569|Cxadr|13052|coxsackie virus and adenovirus receptor	AK160457|Cxadr|13052|coxsackie virus and adenovirus receptor	BC016457|Cxadr|13052|coxsackie virus and adenovirus receptor	BC004680|Cxadr|13052|coxsackie virus and adenovirus receptor	U90715|Cxadr|13052|coxsackie virus and adenovirus receptor	Y10320|Cxadr|13052|coxsackie virus and adenovirus receptor
mm9_v1_chr17_-_47970167_47970209	0.624321	CACAGUG	U57822|Mdfi|17240|MyoD family inhibitor	BC006018|Mdfi|17240|MyoD family inhibitor	NM_010783|Mdfi|17240|MyoD family inhibitor	U57821|Mdfi|17240|MyoD family inhibitor
mm9_v1_chr7_-_91032695_91032850	0.599691	CACAGUG	AK162446|Mesdc1|80889|mesoderm development candidate 1	AK084510|Mesdc1|80889|mesoderm development candidate 1	AK089082|Mesdc1|80889|mesoderm development candidate 1	AK036338|Mesdc1|80889|mesoderm development candidate 1	NM_030705|Mesdc1|80889|mesoderm development candidate 1
mm9_v1_chr4_-_46151281_46151362	0.598493	CACAGUG	BC057893|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	AK165359|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	AK155456|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	AK028258|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	NM_173033|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	AK089417|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2
mm9_v1_chr2_+_129626252_129626487	0.596986	CACAGUG	NM_001038635|Stk35|67333|serine/threonine kinase 35	NM_183262|Stk35|67333|serine/threonine kinase 35	BC138904|Stk35|67333|serine/threonine kinase 35	BC138905|Stk35|67333|serine/threonine kinase 35	AK165988|Stk35|67333|serine/threonine kinase 35	AK006778|Stk35|67333|serine/threonine kinase 35
mm9_v1_chr5_-_125342474_125342590	0.596856	CACAGUG	BC021492|Ccdc92|215707|coiled-coil domain containing 92	AK028192|Ccdc92|215707|coiled-coil domain containing 92	AK165371|Ccdc92|215707|coiled-coil domain containing 92	NM_144819|Ccdc92|215707|coiled-coil domain containing 92
mm9_v1_chr17_-_43013320_43013409	0.590996	CACAGUG	BC138374|Cd2ap|12488|CD2-associated protein	BC157901|Cd2ap|12488|CD2-associated protein	AK045218|Cd2ap|12488|CD2-associated protein	NM_009847|Cd2ap|12488|CD2-associated protein
mm9_v1_chr15_+_99803210_99803320	0.587143	CACAGUG	NM_001024526|Larp4|207214|La ribonucleoprotein domain family, member 4	AK165392|Larp4|207214|La ribonucleoprotein domain family, member 4	AK172198|Larp4|207214|La ribonucleoprotein domain family, member 4	AK049756|Larp4|207214|La ribonucleoprotein domain family, member 4	BC075726|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr7_-_54263783_54263783	0.586771	CACAGUG	NM_175318|Spty2d1|101685|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
mm9_v1_chr2_-_140497204_140497211	0.565963	CACAGUG	AK028252|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK031464|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK161100|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	NM_001172160|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	NM_178382|Flrt3|71436|fibronectin leucine rich transmembrane protein 3
mm9_v1_chr3_+_109376824_109376976	0.559449	CACAGUG	AF140280|Vav3|57257|vav 3 oncogene	NM_146139|Vav3|57257|vav 3 oncogene	AK147053|Vav3|57257|vav 3 oncogene	BC027242|Vav3|57257|vav 3 oncogene
mm9_v1_chr13_-_95992994_95993009	0.55558	CACAGUG	AK043680|Pde8b|218461|phosphodiesterase 8B	AK045991|Pde8b|218461|phosphodiesterase 8B	NM_001170669|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr11_+_56825192_56825257	0.55188	CACAGUG	NM_001113325|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)	NM_008165|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm9_v1_chr6_-_39156706_39156787	0.551322	CACAGUG	AK136238|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042834|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	NM_001033430|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042327|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm9_v1_chr15_-_102347434_102347445	0.541371	CACAGUG	NM_001163643|Map3k12|26404|mitogen-activated protein kinase kinase kinase 12	NM_009582|Map3k12|26404|mitogen-activated protein kinase kinase kinase 12
mm9_v1_chr11_-_65083442_65083498	0.540141	CACAGUG	AF384055|Myocd|214384|myocardin	AY303755|Myocd|214384|myocardin	NM_145136|Myocd|214384|myocardin	NM_146386|Myocd|214384|myocardin	AK142216|Myocd|214384|myocardin
mm9_v1_chr11_-_42134548_42134554	0.537645	CACAGUG	AK135145|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	AK137331|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	NM_001099641|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	NM_008068|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6
mm9_v1_chr7_-_28013615_28013697	0.53654	CACAGUG	BC053450|Itpkc|233011|inositol 1,4,5-trisphosphate 3-kinase C	NM_181593|Itpkc|233011|inositol 1,4,5-trisphosphate 3-kinase C	AK154888|Itpkc|233011|inositol 1,4,5-trisphosphate 3-kinase C	AK051297|Itpkc|233011|inositol 1,4,5-trisphosphate 3-kinase C
mm9_v1_chr4_-_33037783_33037814	0.536014	CACAGUG	AK135024|Ankrd6|140577|ankyrin repeat domain 6	NM_001012451|Ankrd6|140577|ankyrin repeat domain 6
mm9_v1_chr9_+_44187572_44187715	0.534843	CACAGUG	NM_021395|Hyou1|12282|hypoxia up-regulated 1	AK128937|Hyou1|12282|hypoxia up-regulated 1	AK155721|Hyou1|12282|hypoxia up-regulated 1	AK145857|Hyou1|12282|hypoxia up-regulated 1	AK171769|Hyou1|12282|hypoxia up-regulated 1	BC058255|Hyou1|12282|hypoxia up-regulated 1	AK157949|Hyou1|12282|hypoxia up-regulated 1	BC019785|Hyou1|12282|hypoxia up-regulated 1	BC050107|Hyou1|12282|hypoxia up-regulated 1
mm9_v1_chr5_+_28492235_28492251	0.511133	CACAGUG	AK157766|En2|13799|engrailed 2	NM_010134|En2|13799|engrailed 2
mm9_v1_chr4_-_155559234_155559243	0.507211	CACAGUG	BC150703|Agrn|11603|agrin	NM_021604|Agrn|11603|agrin
mm9_v1_chr6_-_58974400_58974495	0.504017	CACAGUG	BC005554|Fam13a|58909|family with sequence similarity 13, member A	BC060978|Fam13a|58909|family with sequence similarity 13, member A	AK052421|Fam13a|58909|family with sequence similarity 13, member A	BC054053|Fam13a|58909|family with sequence similarity 13, member A	AJ510136|Fam13a|58909|family with sequence similarity 13, member A	AK054311|Fam13a|58909|family with sequence similarity 13, member A	BC080861|Fam13a|58909|family with sequence similarity 13, member A	NM_153574|Fam13a|58909|family with sequence similarity 13, member A
mm9_v1_chr6_-_38204008_38204008	0.496382	CACAGUG	NM_194061|D630045J12Rik|330286|RIKEN cDNA D630045J12 gene
mm9_v1_chr6_-_95668770_95668830	0.495121	CACAGUG	BC080781|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK045176|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK042987|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK156263|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK167136|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172363|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172561|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172633|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	NM_011507|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit
mm9_v1_chr6_-_126595818_126595818	0.490385	CACAGUG	NM_010595|Kcna1|16485|potassium voltage-gated channel, shaker-related subfamily, member 1
mm9_v1_chr17_-_47971639_47971639	0.487387	CACAGUG	BC085233|Mdfi|17240|MyoD family inhibitor	NM_001109973|Mdfi|17240|MyoD family inhibitor
mm9_v1_chr13_+_112476313_112476385	0.481578	CACAGUG	AK147427|Mier3|218613|mesoderm induction early response 1, family member 3	NM_172593|Mier3|218613|mesoderm induction early response 1, family member 3
mm9_v1_chr10_-_70700764_70701027	0.480296	CACAGUG	U57939|Tfam|21780|transcription factor A, mitochondrial	AK004857|Tfam|21780|transcription factor A, mitochondrial	BC001987|Tfam|21780|transcription factor A, mitochondrial	BC083084|Tfam|21780|transcription factor A, mitochondrial	AK050446|Tfam|21780|transcription factor A, mitochondrial	AK167348|Tfam|21780|transcription factor A, mitochondrial	NM_009360|Tfam|21780|transcription factor A, mitochondrial	AK163563|Tfam|21780|transcription factor A, mitochondrial	AK017974|Tfam|21780|transcription factor A, mitochondrial	AK161747|Tfam|21780|transcription factor A, mitochondrial	AK167777|Tfam|21780|transcription factor A, mitochondrial	AK169808|Tfam|21780|transcription factor A, mitochondrial	U63859|Tfam|21780|transcription factor A, mitochondrial	U63858|Tfam|21780|transcription factor A, mitochondrial	U63712|Tfam|21780|transcription factor A, mitochondrial
mm9_v1_chr5_-_115636064_115636129	0.472702	CACAGUG	AB079604|Cabp1|29867|calcium binding protein 1	AF169152|Cabp1|29867|calcium binding protein 1	AF169153|Cabp1|29867|calcium binding protein 1	NM_013879|Cabp1|29867|calcium binding protein 1
mm9_v1_chr16_+_33684551_33684609	0.471315	CACAGUG	AK028518|Heg1|77446|HEG homolog 1 (zebrafish)	AK163128|Heg1|77446|HEG homolog 1 (zebrafish)	NM_175256|Heg1|77446|HEG homolog 1 (zebrafish)
mm9_v1_chr7_+_64845887_64845914	0.465605	CACAGUG	AK083107|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	NM_001038701|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm9_v1_chr2_+_149656518_149656618	0.463638	CACAGUG	NM_001085521|Tmem90b|433485|transmembrane protein 90B
mm9_v1_chr17_+_28938070_28938070	0.460481	CACAGUG	AK147555|Brpf3|268936|bromodomain and PHD finger containing, 3	NM_001081315|Brpf3|268936|bromodomain and PHD finger containing, 3
mm9_v1_chr3_-_104024291_104024328	0.459098	CACAGUG	AK018328|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3	NM_001159354|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3	NM_133853|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3
mm9_v1_chr4_-_134828503_134828682	0.453919	CACAGUG	CT010279|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172516|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC052890|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC046384|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AF102578|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	NM_013885|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049191|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK150993|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK155826|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166794|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169376|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169834|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172660|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049255|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK031211|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK054024|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK152273|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK160856|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK161034|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172026|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK153432|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK159402|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166244|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK171243|Clic4|29876|chloride intracellular channel 4 (mitochondrial)
mm9_v1_chr9_+_95459990_95460369	0.451805	CACAGUG	AY424298|Paqr9|75552|progestin and adipoQ receptor family member IX	NM_198414|Paqr9|75552|progestin and adipoQ receptor family member IX	AK133021|Paqr9|75552|progestin and adipoQ receptor family member IX
mm9_v1_chr2_+_125498825_125498913	0.446339	CACAGUG	AK002559|Eid1|58521|EP300 interacting inhibitor of differentiation 1	NM_025613|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK011293|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK012453|Eid1|58521|EP300 interacting inhibitor of differentiation 1	BC010712|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK077783|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK017543|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK169604|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK005258|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AL357453|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK078402|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK078409|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK148555|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK014440|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AF509968|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK078826|Eid1|58521|EP300 interacting inhibitor of differentiation 1	BC069897|Eid1|58521|EP300 interacting inhibitor of differentiation 1
mm9_v1_chr2_-_58177217_58177217	0.438539	CACAGUG	AK049089|Acvr1c|269275|activin A receptor, type IC	NM_001033369|Acvr1c|269275|activin A receptor, type IC
mm9_v1_chr10_+_127176590_127176697	0.438457	CACAGUG	BC058661|Zbtb39|320080|zinc finger and BTB domain containing 39	NM_198035|Zbtb39|320080|zinc finger and BTB domain containing 39	AK135409|Zbtb39|320080|zinc finger and BTB domain containing 39	AK155700|Zbtb39|320080|zinc finger and BTB domain containing 39	BC079569|Zbtb39|320080|zinc finger and BTB domain containing 39
mm9_v1_chr2_+_130121674_130121674	0.43649	CACAGUG	AF387630|Ebf4|228598|early B-cell factor 4	AF387631|Ebf4|228598|early B-cell factor 4	AF387632|Ebf4|228598|early B-cell factor 4	AF387633|Ebf4|228598|early B-cell factor 4	AF387634|Ebf4|228598|early B-cell factor 4	BC138119|Ebf4|228598|early B-cell factor 4	BC145155|Ebf4|228598|early B-cell factor 4	NM_001110513|Ebf4|228598|early B-cell factor 4
mm9_v1_chr11_-_53293696_53293735	0.436392	CACAGUG	NM_183173|Ankrd43|237761|ankyrin repeat domain 43
mm9_v1_chr5_-_46247789_46247790	0.436042	CACAGUG	AB076078|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK042567|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_172153|Lcorl|209707|ligand dependent nuclear receptor corepressor-like
mm9_v1_chr8_-_72519966_72520302	0.432146	CACAGUG	AK160058|Gatad2a|234366|GATA zinc finger domain containing 2A	AK089074|Gatad2a|234366|GATA zinc finger domain containing 2A	NM_001113345|Gatad2a|234366|GATA zinc finger domain containing 2A	NM_145596|Gatad2a|234366|GATA zinc finger domain containing 2A	AK083473|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr18_-_52689279_52689397	0.423457	CACAGUG	AK159199|Lox|16948|lysyl oxidase	AK159263|Lox|16948|lysyl oxidase	AK166386|Lox|16948|lysyl oxidase	BC018439|Lox|16948|lysyl oxidase	AK141995|Lox|16948|lysyl oxidase	NM_010728|Lox|16948|lysyl oxidase
mm9_v1_chr4_-_124539414_124539476	0.414901	CACAGUG	BC065047|Maneal|215090|mannosidase, endo-alpha-like	NM_001007573|Maneal|215090|mannosidase, endo-alpha-like
mm9_v1_chr5_+_34185760_34185844	0.412203	CACAGUG	NM_001081102|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_001177884|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_175231|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	BC079668|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)
mm9_v1_chr16_-_44139087_44139164	0.407976	CACAGUG	AK140873|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	BC038392|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK150742|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK166857|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK149833|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK153403|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK154869|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK160792|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK170721|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	NM_007508|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A
mm9_v1_chr2_+_163820920_163821078	0.393967	CACAGUG	AK150414|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK151294|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK004872|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK011389|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	NM_018753|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AF058797|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK083367|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK158932|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK204033|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC132121|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC138512|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr8_+_109817355_109817761	0.393609	CACAGUG	AK045123|Nfat5|54446|nuclear factor of activated T-cells 5	AK134022|Nfat5|54446|nuclear factor of activated T-cells 5	NM_018823|Nfat5|54446|nuclear factor of activated T-cells 5	NM_133957|Nfat5|54446|nuclear factor of activated T-cells 5	AK052632|Nfat5|54446|nuclear factor of activated T-cells 5	AF162853|Nfat5|54446|nuclear factor of activated T-cells 5	AK172011|Nfat5|54446|nuclear factor of activated T-cells 5	AF369980|Nfat5|54446|nuclear factor of activated T-cells 5	AF453571|Nfat5|54446|nuclear factor of activated T-cells 5
mm9_v1_chrX_+_132804791_132804829	0.393174	CACAGUG	NM_001110233|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1	NM_001110234|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1	NM_009750|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr7_-_144506112_144506127	0.380906	CACAGUG	AK220542|Ebf3|13593|early B-cell factor 3	NM_001113414|Ebf3|13593|early B-cell factor 3	NM_001113415|Ebf3|13593|early B-cell factor 3	NM_010096|Ebf3|13593|early B-cell factor 3
mm9_v1_chr6_-_72566993_72566993	0.376227	CACAGUG	AK076586|Tgoln1|22134|trans-golgi network protein	NM_009443|Tgoln1|22134|trans-golgi network protein
mm9_v1_chr8_-_8660610_8660772	0.367144	CACAGUG	U30244|Efnb2|13642|ephrin B2	CT010381|Efnb2|13642|ephrin B2	U16819|Efnb2|13642|ephrin B2	L38847|Efnb2|13642|ephrin B2	NM_010111|Efnb2|13642|ephrin B2
mm9_v1_chr2_+_173563060_173563229	0.361767	CACAGUG	BC048231|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	NM_019806|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	BC057123|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK050632|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK081908|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AF115504|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK160925|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK172080|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chr15_-_63891810_63892112	0.358092	CACAGUG	AK075613|Fam49b|223601|family with sequence similarity 49, member B	AK043641|Fam49b|223601|family with sequence similarity 49, member B	AK028062|Fam49b|223601|family with sequence similarity 49, member B	NM_144846|Fam49b|223601|family with sequence similarity 49, member B
mm9_v1_chr6_+_141197789_141197831	0.357158	CACAGUG	AF099187|Pde3a|54611|phosphodiesterase 3A, cGMP inhibited	NM_018779|Pde3a|54611|phosphodiesterase 3A, cGMP inhibited	BC138265|Pde3a|54611|phosphodiesterase 3A, cGMP inhibited	BC138266|Pde3a|54611|phosphodiesterase 3A, cGMP inhibited
mm9_v1_chr1_-_134638361_134638397	0.355632	CACAGUG	AK052440|Nfasc|269116|neurofascin	NM_001160317|Nfasc|269116|neurofascin	NM_182716|Nfasc|269116|neurofascin
mm9_v1_chr11_-_88579517_88579542	0.353962	CACAGUG	AK156439|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049637|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049688|Msi2|76626|Musashi homolog 2 (Drosophila)	NM_054043|Msi2|76626|Musashi homolog 2 (Drosophila)
mm9_v1_chr11_+_60591019_60591051	0.353711	CACAGUG	NM_001085440|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	NM_175491|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	AK052754|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	AK164045|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	AK145010|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	AK083739|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)
mm9_v1_chr14_-_124591742_124591767	0.349428	CACAGUG	U66204|Fgf14|14169|fibroblast growth factor 14	NM_010201|Fgf14|14169|fibroblast growth factor 14
mm9_v1_chr16_+_20629900_20629923	0.347161	CACAGUG	AK031951|Ece2|107522|endothelin converting enzyme 2	AF489571|Ece2|107522|endothelin converting enzyme 2	AF489572|Ece2|107522|endothelin converting enzyme 2	NM_139293|Ece2|107522|endothelin converting enzyme 2	NM_177942|Ece2|107522|endothelin converting enzyme 2
mm9_v1_chr2_-_65962685_65962849	0.346567	CACAGUG	U70538|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	BC043331|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	BC003765|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK007135|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK135489|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK019995|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	NM_015736|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3
mm9_v1_chr7_-_50745358_50745392	0.339342	CACAGUG	AK039193|Iglon5|210094|IgLON family member 5	NM_001164518|Iglon5|210094|IgLON family member 5
mm9_v1_chr17_+_74154180_74154211	0.3376	CACAGUG	AK141265|Ehd3|57440|EH-domain containing 3	NM_020578|Ehd3|57440|EH-domain containing 3	AK128964|Ehd3|57440|EH-domain containing 3	AF155883|Ehd3|57440|EH-domain containing 3
mm9_v1_chr17_+_84911219_84911272	0.333214	CACAGUG	AK029252|Plekhh2|213556|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	NM_177606|Plekhh2|213556|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	BC125583|Plekhh2|213556|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	BC137804|Plekhh2|213556|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	BC021518|Plekhh2|213556|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2
mm9_v1_chr18_-_55149819_55149833	0.33206	CACAGUG	AK051334|Zfp608|269023|zinc finger protein 608	NM_175751|Zfp608|269023|zinc finger protein 608
mm9_v1_chr16_+_20611637_20611755	0.33028	CACAGUG	AK007407|Ece2|107522|endothelin converting enzyme 2	AK007791|Ece2|107522|endothelin converting enzyme 2	BC115541|Ece2|107522|endothelin converting enzyme 2	BC115542|Ece2|107522|endothelin converting enzyme 2	NM_025462|Ece2|107522|endothelin converting enzyme 2	NM_177940|Ece2|107522|endothelin converting enzyme 2	NM_177941|Ece2|107522|endothelin converting enzyme 2
mm9_v1_chr6_-_29559606_29559647	0.329197	CACAGUG	BC064646|Tnpo3|320938|transportin 3	NM_177296|Tnpo3|320938|transportin 3	AK145723|Tnpo3|320938|transportin 3	AK045143|Tnpo3|320938|transportin 3
mm9_v1_chr4_+_139131050_139131050	0.32699	CACAGUG	NM_183148|Iffo2|212632|intermediate filament family orphan 2
mm9_v1_chr5_-_46248719_46248778	0.326817	CACAGUG	BC066151|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK041987|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK043498|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK154398|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK155421|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK083689|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK043845|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	BC138563|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_001163073|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_178142|Lcorl|209707|ligand dependent nuclear receptor corepressor-like
mm9_v1_chrX_-_7318412_7318449	0.318276	CACAGUG	BC053918|Ccdc120|54648|coiled-coil domain containing 120	NM_207202|Ccdc120|54648|coiled-coil domain containing 120
mm9_v1_chr11_+_98724908_98724950	0.309865	CACAGUG	NM_197940|Wipf2|68524|WAS/WASL interacting protein family, member 2
mm9_v1_chr6_-_88468710_88468869	0.30837	CACAGUG	AF145253|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AF222743|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AK167484|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	BC003707|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AK159349|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AK153055|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AK088473|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	NM_016906|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AB032902|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)
mm9_v1_chr8_-_89409079_89409204	0.305449	CACAGUG	AK134934|N4bp1|80750|NEDD4 binding protein 1	AK172981|N4bp1|80750|NEDD4 binding protein 1	AK147522|N4bp1|80750|NEDD4 binding protein 1	NM_030563|N4bp1|80750|NEDD4 binding protein 1
mm9_v1_chr1_-_134539434_134539434	0.303296	CACAGUG	NM_001160316|Nfasc|269116|neurofascin
mm9_v1_chr9_+_64233432_64233531	0.298882	CACAGUG	NM_001134399|Megf11|214058|multiple EGF-like-domains 11	NM_172522|Megf11|214058|multiple EGF-like-domains 11	AK048840|Megf11|214058|multiple EGF-like-domains 11	AK122555|Megf11|214058|multiple EGF-like-domains 11	AK051642|Megf11|214058|multiple EGF-like-domains 11	BC151157|Megf11|214058|multiple EGF-like-domains 11	BC172024|Megf11|214058|multiple EGF-like-domains 11
mm9_v1_chr7_+_64846528_64846556	0.298219	CACAGUG	AK083051|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	NM_008071|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm9_v1_chr7_+_116154373_116154494	0.297855	CACAGUG	AK165720|Tub|22141|tubby candidate gene	NM_021885|Tub|22141|tubby candidate gene	U52433|Tub|22141|tubby candidate gene	BC096554|Tub|22141|tubby candidate gene	U54643|Tub|22141|tubby candidate gene
mm9_v1_chr3_-_86978431_86978668	0.296203	CACAGUG	BC023765|Kirrel|170643|kin of IRRE like (Drosophila)	AK158381|Kirrel|170643|kin of IRRE like (Drosophila)	NM_001170985|Kirrel|170643|kin of IRRE like (Drosophila)	NM_130867|Kirrel|170643|kin of IRRE like (Drosophila)
mm9_v1_chr9_+_55174719_55174759	0.294101	CACAGUG	BC068128|AI118078|244886|expressed sequence AI118078	AK036040|AI118078|244886|expressed sequence AI118078	NM_172923|AI118078|244886|expressed sequence AI118078
mm9_v1_chr11_+_97311458_97311517	0.292699	CACAGUG	NM_021493|Arhgap23|58996|Rho GTPase activating protein 23
mm9_v1_chr10_+_126432666_126432668	0.288382	CACAGUG	BC025650|Ctdsp2|52468|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	NM_146012|Ctdsp2|52468|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm9_v1_chr2_-_63936044_63936094	0.286163	CACAGUG	AF263913|Fign|60344|fidgetin	AK163474|Fign|60344|fidgetin	AK164536|Fign|60344|fidgetin	NM_021716|Fign|60344|fidgetin	AK143787|Fign|60344|fidgetin	BC059266|Fign|60344|fidgetin
mm9_v1_chr18_+_31919533_31919621	0.283432	CACAGUG	BC056948|Ammecr1l|225339|AMME chromosomal region gene 1-like	NM_153515|Ammecr1l|225339|AMME chromosomal region gene 1-like	AK151257|Ammecr1l|225339|AMME chromosomal region gene 1-like
mm9_v1_chr14_+_28435613_28435695	0.283402	CACAGUG	AK147213|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	BC056760|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	NM_177814|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	AK032385|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2
mm9_v1_chr18_+_23962468_23962588	0.282764	CACAGUG	NM_153058|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK038562|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK140595|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK040767|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK045904|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK148954|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK046221|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC027056|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC035254|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC025804|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK050527|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK148480|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK046095|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK088734|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC028987|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK045493|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr9_+_72892614_72892671	0.281918	CACAGUG	BC008173|Rab27a|11891|RAB27A, member RAS oncogene family	BC009656|Rab27a|11891|RAB27A, member RAS oncogene family	AK030529|Rab27a|11891|RAB27A, member RAS oncogene family	NM_023635|Rab27a|11891|RAB27A, member RAS oncogene family
mm9_v1_chr6_-_72566691_72566744	0.281103	CACAGUG	CT010269|Tgoln1|22134|trans-golgi network protein	AK161242|Tgoln1|22134|trans-golgi network protein	AK145212|Tgoln2|22135|trans-golgi network protein 2	BC009143|Tgoln1|22134|trans-golgi network protein	BC141218|Tgoln1|22134|trans-golgi network protein	BC145542|Tgoln1|22134|trans-golgi network protein	AK133559|Tgoln1|22134|trans-golgi network protein	D50031|Tgoln1|22134|trans-golgi network protein	D50032|Tgoln2|22135|trans-golgi network protein 2	NM_009444|Tgoln2|22135|trans-golgi network protein 2	AK041302|Tgoln1|22134|trans-golgi network protein	AK162574|Tgoln1|22134|trans-golgi network protein
mm9_v1_chr3_-_125641429_125641514	0.280885	CACAGUG	AK163650|Ugt8a|22239|UDP galactosyltransferase 8A	AK128994|Ugt8a|22239|UDP galactosyltransferase 8A	AK137364|Ugt8a|22239|UDP galactosyltransferase 8A	AK144005|Ugt8a|22239|UDP galactosyltransferase 8A	NM_011674|Ugt8a|22239|UDP galactosyltransferase 8A	AK078371|Ugt8a|22239|UDP galactosyltransferase 8A
mm9_v1_chr4_+_62626582_62626639	0.280487	CACAGUG	NM_028326|Zfp618|72701|zinc fingerprotein 618	AK012848|Zfp618|72701|zinc fingerprotein 618
mm9_v1_chr8_+_42325093_42325221	0.280271	CACAGUG	AK133754|Pcm1|18536|pericentriolar material 1	AK011147|Pcm1|18536|pericentriolar material 1	AK141516|Pcm1|18536|pericentriolar material 1	NM_023662|Pcm1|18536|pericentriolar material 1	AF369838|Pcm1|18536|pericentriolar material 1	AB029291|Pcm1|18536|pericentriolar material 1	BC053728|Pcm1|18536|pericentriolar material 1	BC139033|Pcm1|18536|pericentriolar material 1
mm9_v1_chr10_+_79642100_79642260	0.278172	CACAGUG	AK140544|Efna2|13637|ephrin A2	NM_007909|Efna2|13637|ephrin A2
mm9_v1_chr2_-_51004604_51004631	0.273677	CACAGUG	BC009002|Rnd3|74194|Rho family GTPase 3	AK035195|Rnd3|74194|Rho family GTPase 3	AK048635|Rnd3|74194|Rho family GTPase 3	AK011442|Rnd3|74194|Rho family GTPase 3	NM_028810|Rnd3|74194|Rho family GTPase 3
mm9_v1_chr11_+_77908168_77908192	0.270457	CACAGUG	AK085728|BC017647|216971|cDNA sequence BC017647	NM_145430|BC017647|216971|cDNA sequence BC017647	AK047860|BC017647|216971|cDNA sequence BC017647	AK140562|BC017647|216971|cDNA sequence BC017647
mm9_v1_chr5_-_99681835_99681949	0.26813	CACAGUG	AK028756|Rasgef1b|320292|RasGEF domain family, member 1B	BC052726|Rasgef1b|320292|RasGEF domain family, member 1B	AK090085|Rasgef1b|320292|RasGEF domain family, member 1B	AK149812|Rasgef1b|320292|RasGEF domain family, member 1B	AY129963|Rasgef1b|320292|RasGEF domain family, member 1B	BC050858|Rasgef1b|320292|RasGEF domain family, member 1B	NM_145839|Rasgef1b|320292|RasGEF domain family, member 1B	NM_181318|Rasgef1b|320292|RasGEF domain family, member 1B
mm9_v1_chr2_+_181231870_181232009	0.267253	CACAGUG	AK171825|Tpd52l2|66314|tumor protein D52-like 2	AK147885|Tpd52l2|66314|tumor protein D52-like 2	AK161092|Tpd52l2|66314|tumor protein D52-like 2	AK013188|Tpd52l2|66314|tumor protein D52-like 2	AK051268|Tpd52l2|66314|tumor protein D52-like 2	AK160727|Tpd52l2|66314|tumor protein D52-like 2	AK013085|Tpd52l2|66314|tumor protein D52-like 2	AK155987|Tpd52l2|66314|tumor protein D52-like 2	AK159925|Tpd52l2|66314|tumor protein D52-like 2	BC006886|Tpd52l2|66314|tumor protein D52-like 2	NM_025482|Tpd52l2|66314|tumor protein D52-like 2
mm9_v1_chr5_-_143579060_143579087	0.264118	CACAGUG	BC049818|Tnrc18|231861|trinucleotide repeat containing 18	NM_001122730|Tnrc18|231861|trinucleotide repeat containing 18	NM_178242|Tnrc18|231861|trinucleotide repeat containing 18
mm9_v1_chr17_+_15080188_15080199	0.260707	CACAGUG	AK028052|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083880|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083881|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083882|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_026451|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene
mm9_v1_chrX_-_159267249_159267385	0.260619	CACAGUG	AK162263|Txlng|353170|taxilin gamma	BC080778|Txlng|353170|taxilin gamma	AK161561|Txlng|353170|taxilin gamma	AK031783|Txlng|353170|taxilin gamma	BC059099|Txlng|353170|taxilin gamma	BC117898|Txlng|353170|taxilin gamma	BC117899|Txlng|353170|taxilin gamma	AK030100|Txlng|353170|taxilin gamma	NM_178935|Txlng|353170|taxilin gamma	AK078477|Txlng|353170|taxilin gamma	AK044130|Txlng|353170|taxilin gamma	DQ316984|Txlng|353170|taxilin gamma	DQ320011|Txlng|353170|taxilin gamma
mm9_v1_chr14_-_109313447_109313461	0.26031	CACAGUG	NM_199065|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr6_-_72849854_72850037	0.25914	CACAGUG	NM_019715|Kcmf1|74287|potassium channel modulatory factor 1
mm9_v1_chr7_-_91300359_91300442	0.257787	CACAGUG	BC018511|Fam108c|70178|family with sequence similarity 108, member C	NM_133722|Fam108c|70178|family with sequence similarity 108, member C
mm9_v1_chr9_-_62994774_62994817	0.257151	CACAGUG	BC138063|Skor1|207667|SKI family transcriptional corepressor 1	AK049035|Skor1|207667|SKI family transcriptional corepressor 1	NM_172446|Skor1|207667|SKI family transcriptional corepressor 1	AK134840|Skor1|207667|SKI family transcriptional corepressor 1	AB185113|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163755|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163757|Skor1|207667|SKI family transcriptional corepressor 1
mm9_v1_chr10_+_57718246_57718291	0.253987	CACAGUG	AK008992|Gcc2|70297|GRIP and coiled-coil domain containing 2	AK011206|Gcc2|70297|GRIP and coiled-coil domain containing 2	AK045701|Gcc2|70297|GRIP and coiled-coil domain containing 2	NM_027375|Gcc2|70297|GRIP and coiled-coil domain containing 2	BC139007|Gcc2|70297|GRIP and coiled-coil domain containing 2	BC145495|Gcc2|70297|GRIP and coiled-coil domain containing 2	BC027339|Gcc2|70297|GRIP and coiled-coil domain containing 2
mm9_v1_chr11_+_16652205_16652516	0.249291	CACAGUG	AK004883|Egfr|13649|epidermal growth factor receptor	NM_007912|Egfr|13649|epidermal growth factor receptor	NM_207655|Egfr|13649|epidermal growth factor receptor	AK004944|Egfr|13649|epidermal growth factor receptor	AK004911|Egfr|13649|epidermal growth factor receptor	AK134262|Egfr|13649|epidermal growth factor receptor	AK014017|Egfr|13649|epidermal growth factor receptor	BC023729|Egfr|13649|epidermal growth factor receptor	AF124513|Egfr|13649|epidermal growth factor receptor	AF275367|Egfr|13649|epidermal growth factor receptor	X59698|Egfr|13649|epidermal growth factor receptor	AK049452|Egfr|13649|epidermal growth factor receptor	X78987|Egfr|13649|epidermal growth factor receptor	U03425|Egfr|13649|epidermal growth factor receptor	L06864|Egfr|13649|epidermal growth factor receptor
mm9_v1_chr15_+_85166667_85166841	0.249197	CACAGUG	BC046802|Atxn10|54138|ataxin 10	X61506|Atxn10|54138|ataxin 10	AK002504|Atxn10|54138|ataxin 10	AK166899|Atxn10|54138|ataxin 10	AK078459|Atxn10|54138|ataxin 10	AK047170|Atxn10|54138|ataxin 10	AK049706|Atxn10|54138|ataxin 10	AK170751|Atxn10|54138|ataxin 10	AK165941|Atxn10|54138|ataxin 10	AK161950|Atxn10|54138|ataxin 10	AK170507|Atxn10|54138|ataxin 10	BC016410|Atxn10|54138|ataxin 10	AK077738|Atxn10|54138|ataxin 10	AK153271|Atxn10|54138|ataxin 10	NM_016843|Atxn10|54138|ataxin 10
mm9_v1_chr10_-_20444654_20444883	0.248663	CACAGUG	AF190639|Pde7b|29863|phosphodiesterase 7B	BC130267|Pde7b|29863|phosphodiesterase 7B	AK020137|Pde7b|29863|phosphodiesterase 7B	AK040876|Pde7b|29863|phosphodiesterase 7B	NM_013875|Pde7b|29863|phosphodiesterase 7B	AK035385|Pde7b|29863|phosphodiesterase 7B
mm9_v1_chr11_-_59104252_59104253	0.243362	CACAGUG	NM_009522|Wnt3a|22416|wingless-related MMTV integration site 3A	X56842|Wnt3a|22416|wingless-related MMTV integration site 3A
mm9_v1_chr3_+_64913564_64913693	0.235357	CACAGUG	BC014701|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	NM_010597|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	U65591|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm9_v1_chr16_-_46010510_46010548	0.233337	CACAGUG	NM_001134480|Plcxd2|433022|phosphatidylinositol-specific phospholipase C, X domain containing 2
mm9_v1_chr10_-_85961630_85961659	0.232846	CACAGUG	AK043854|Syn3|27204|synapsin III	AK087342|Syn3|27204|synapsin III	NM_001164495|Syn3|27204|synapsin III	NM_013722|Syn3|27204|synapsin III
mm9_v1_chr15_-_96291163_96291288	0.232567	CACAGUG	AK129478|Scaf11|72193|SR-related CTD-associated factor 11	AK034674|Scaf11|72193|SR-related CTD-associated factor 11	BC058682|Scaf11|72193|SR-related CTD-associated factor 11	NM_028148|Scaf11|72193|SR-related CTD-associated factor 11
mm9_v1_chr15_+_102839909_102840036	0.226444	CACAGUG	X16511|Hoxc6|15425|homeobox C6	BC028482|Hoxc6|15425|homeobox C6	NM_010465|Hoxc6|15425|homeobox C6	BC141061|Hoxc6|15425|homeobox C6	AB221685|Hoxc6|15425|homeobox C6
mm9_v1_chr7_-_20408100_20408121	0.225125	CACAGUG	NM_033601|Bcl3|12051|B-cell leukemia/lymphoma 3
mm9_v1_chr11_-_100981015_100981199	0.224712	CACAGUG	AK194930|Fam134c|67998|family with sequence similarity 134, member C	AK016648|Fam134c|67998|family with sequence similarity 134, member C	AK160000|Fam134c|67998|family with sequence similarity 134, member C	BC016089|Fam134c|67998|family with sequence similarity 134, member C	AK151685|Fam134c|67998|family with sequence similarity 134, member C	AK004979|Fam134c|67998|family with sequence similarity 134, member C	NM_026501|Fam134c|67998|family with sequence similarity 134, member C	AK163482|Fam134c|67998|family with sequence similarity 134, member C	AK004960|Fam134c|67998|family with sequence similarity 134, member C	AK051025|Fam134c|67998|family with sequence similarity 134, member C	NM_028933|Fam134c|67998|family with sequence similarity 134, member C
mm9_v1_chr12_+_82960953_82961016	0.222537	CACAGUG	NM_018814|Pcnx|54604|pecanex homolog (Drosophila)
mm9_v1_chr3_+_89324085_89324085	0.219979	CACAGUG	AK137738|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	AK170218|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	NM_080466|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm9_v1_chr14_-_26588341_26588548	0.216369	CACAGUG	NM_001101433|Zcchc24|71918|zinc finger, CCHC domain containing 24	BC147263|Zcchc24|71918|zinc finger, CCHC domain containing 24	BC147264|Zcchc24|71918|zinc finger, CCHC domain containing 24
mm9_v1_chr13_-_99660903_99660996	0.215472	CACAGUG	BC055372|Tnpo1|238799|transportin 1	AK167049|Tnpo1|238799|transportin 1	AK045132|Tnpo1|238799|transportin 1	NM_001048267|Tnpo1|238799|transportin 1
mm9_v1_chr18_+_84257471_84257589	0.215391	CACAGUG	AK083082|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	AK047559|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	AK081988|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	BC116427|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	BC116428|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	NM_146090|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2
mm9_v1_chr1_-_134603848_134603902	0.20782	CACAGUG	AK129207|Nfasc|269116|neurofascin	NM_001160318|Nfasc|269116|neurofascin
mm9_v1_chr14_-_125076242_125076348	0.20717	CACAGUG	BC107003|Fgf14|14169|fibroblast growth factor 14	BC107004|Fgf14|14169|fibroblast growth factor 14	AK079100|Fgf14|14169|fibroblast growth factor 14	NM_207667|Fgf14|14169|fibroblast growth factor 14
mm9_v1_chr16_+_37868418_37868496	0.207137	CACAGUG	AK090204|Lrrc58|320184|leucine rich repeat containing 58	AK049274|Lrrc58|320184|leucine rich repeat containing 58	NM_177093|Lrrc58|320184|leucine rich repeat containing 58
mm9_v1_chr17_-_48061577_48061752	0.206143	CACAGUG	BC057110|Foxp4|74123|forkhead box P4	NM_001110824|Foxp4|74123|forkhead box P4	NM_001110825|Foxp4|74123|forkhead box P4	NM_028767|Foxp4|74123|forkhead box P4
mm9_v1_chrX_+_38754480_38754557	0.195691	CACAGUG	NM_016886|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	BC086678|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr9_+_21528037_21528221	0.19534	CACAGUG	NM_010700|Ldlr|16835|low density lipoprotein receptor	AK076243|Ldlr|16835|low density lipoprotein receptor	AK151968|Ldlr|16835|low density lipoprotein receptor	BC053041|Ldlr|16835|low density lipoprotein receptor	AK170264|Ldlr|16835|low density lipoprotein receptor	AK149950|Ldlr|16835|low density lipoprotein receptor	AK160006|Ldlr|16835|low density lipoprotein receptor	AK161104|Ldlr|16835|low density lipoprotein receptor	AK166466|Ldlr|16835|low density lipoprotein receptor	AK018697|Ldlr|16835|low density lipoprotein receptor	AK152103|Ldlr|16835|low density lipoprotein receptor	X64414|Ldlr|16835|low density lipoprotein receptor	BC019207|Ldlr|16835|low density lipoprotein receptor	AK184620|Ldlr|16835|low density lipoprotein receptor	AF425607|Ldlr|16835|low density lipoprotein receptor	Z19521|Ldlr|16835|low density lipoprotein receptor
mm9_v1_chr15_-_38008565_38008625	0.194904	CACAGUG	NM_001081359|Ubr5|70790|ubiquitin protein ligase E3 component n-recognin 5	NM_001112721|Ubr5|70790|ubiquitin protein ligase E3 component n-recognin 5
mm9_v1_chr10_-_53470714_53470714	0.194862	CACAGUG	AK015334|Fam184a|75906|family with sequence similarity 184, member A	NM_001081428|Fam184a|75906|family with sequence similarity 184, member A
mm9_v1_chr13_-_102538106_102538184	0.190585	CACAGUG	M60651|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	U50413|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	BC026146|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	AK160493|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	AK171366|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	NM_001077495|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chr11_+_69715343_69715451	0.189938	CACAGUG	NM_001013414|Neurl4|216860|neuralized homolog 4 (Drosophila)	AK157107|Neurl4|216860|neuralized homolog 4 (Drosophila)
mm9_v1_chr12_+_96930429_96930467	0.189775	CACAGUG	AK135149|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	NM_201518|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	AK136973|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	BC067058|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	AK041311|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	BC096471|Flrt2|399558|fibronectin leucine rich transmembrane protein 2
mm9_v1_chr15_+_88906446_88906550	0.186561	CACAGUG	NM_026485|Trabd|67976|TraB domain containing	AK017745|Trabd|67976|TraB domain containing	AK146027|Trabd|67976|TraB domain containing	AK005300|Trabd|67976|TraB domain containing
mm9_v1_chr2_-_181333786_181333936	0.186158	CACAGUG	AK053884|Samd10|229011|sterile alpha motif domain containing 10	AK053048|Samd10|229011|sterile alpha motif domain containing 10	BC052921|Samd10|229011|sterile alpha motif domain containing 10	NM_172676|Samd10|229011|sterile alpha motif domain containing 10	AK171151|Samd10|229011|sterile alpha motif domain containing 10	BC019475|Samd10|229011|sterile alpha motif domain containing 10	AK164204|Samd10|229011|sterile alpha motif domain containing 10
mm9_v1_chr3_-_9610062_9610137	0.183913	CACAGUG	AF292939|Zfp704|170753|zinc finger protein 704	NM_133218|Zfp704|170753|zinc finger protein 704
mm9_v1_chr12_-_111934580_111934653	0.183691	CACAGUG	BC049124|Hsp90aa1|15519|heat shock protein 90, alpha (cytosolic), class A member 1	AK004658|Hsp90aa1|15519|heat shock protein 90, alpha (cytosolic), class A member 1	NM_010480|Hsp90aa1|15519|heat shock protein 90, alpha (cytosolic), class A member 1
mm9_v1_chr17_+_47832121_47832155	0.183633	CACAGUG	BC014819|Frs3|107971|fibroblast growth factor receptor substrate 3	NM_144939|Frs3|107971|fibroblast growth factor receptor substrate 3
mm9_v1_chr7_+_140829357_140829384	0.17779	CACAGUG	NM_178115|2700050L05Rik|214764|RIKEN cDNA 2700050L05 gene	AK052387|2700050L05Rik|214764|RIKEN cDNA 2700050L05 gene
mm9_v1_chr11_+_98799013_98799173	0.177228	CACAGUG	S56656|Rara|19401|retinoic acid receptor, alpha	BC040383|Rara|19401|retinoic acid receptor, alpha	NM_001177302|Rara|19401|retinoic acid receptor, alpha	AK154623|Rara|19401|retinoic acid receptor, alpha
mm9_v1_chr18_-_23200150_23200199	0.17072	CACAGUG	AK006244|Nol4|319211|nucleolar protein 4	AK031008|Nol4|319211|nucleolar protein 4	NM_199024|Nol4|319211|nucleolar protein 4	AK005959|Nol4|319211|nucleolar protein 4
mm9_v1_chr3_+_37538808_37538883	0.168297	CACAGUG	BC053428|Spry1|24063|sprouty homolog 1 (Drosophila)	NM_011896|Spry1|24063|sprouty homolog 1 (Drosophila)	AK014578|Spry1|24063|sprouty homolog 1 (Drosophila)	AK140405|Spry1|24063|sprouty homolog 1 (Drosophila)	BC039139|Spry1|24063|sprouty homolog 1 (Drosophila)
mm9_v1_chr9_-_43047862_43047949	0.167176	CACAGUG	BC026022|Oaf|102644|OAF homolog (Drosophila)	BC034836|Oaf|102644|OAF homolog (Drosophila)	AK150279|Oaf|102644|OAF homolog (Drosophila)	BC025514|Oaf|102644|OAF homolog (Drosophila)	AK051349|Oaf|102644|OAF homolog (Drosophila)	NM_178644|Oaf|102644|OAF homolog (Drosophila)
mm9_v1_chr1_+_95700522_95700570	0.164434	CACAGUG	AK028397|Ing5|66262|inhibitor of growth family, member 5	NM_025454|Ing5|66262|inhibitor of growth family, member 5	AK007536|Ing5|66262|inhibitor of growth family, member 5	BC064674|Ing5|66262|inhibitor of growth family, member 5	AK009312|Ing5|66262|inhibitor of growth family, member 5	AK028010|Ing5|66262|inhibitor of growth family, member 5	AK145695|Ing5|66262|inhibitor of growth family, member 5
mm9_v1_chr18_-_47528483_47528523	0.160973	CACAGUG	BC059238|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	AK042751|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	NM_018744|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	AK082711|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm9_v1_chr19_+_53404935_53404935	0.159846	CACAGUG	L38821|Mxi1|17859|Max interacting protein 1	NM_001008543|Mxi1|17859|Max interacting protein 1
mm9_v1_chr11_+_69814046_69814322	0.154275	CACAGUG	AK144001|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	BC092396|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	BC021015|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	AK146822|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	NM_007888|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	U24160|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	BC053050|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	AK168376|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	AK159895|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	AK050614|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)
mm9_v1_chr11_+_96143218_96143218	0.153682	CACAGUG	NM_010461|Hoxb8|15416|homeobox B8	X13721|Hoxb8|15416|homeobox B8
mm9_v1_chr4_-_106850812_106850984	0.150085	CACAGUG	AK008694|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene	BC028321|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene	AK011991|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene	AK008715|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene	NM_025617|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene
mm9_v1_chr17_-_91492065_91492142	0.147934	CACAGUG	BC079893|Nrxn1|18189|neurexin I	AK005349|Nrxn1|18189|neurexin I	AK139280|Nrxn1|18189|neurexin I	AK163484|Nrxn1|18189|neurexin I	AK037724|Nrxn1|18189|neurexin I	AB093249|Nrxn1|18189|neurexin I	NM_020252|Nrxn1|18189|neurexin I	NM_177284|Nrxn1|18189|neurexin I	AK137407|Nrxn1|18189|neurexin I
mm9_v1_chr17_+_28046196_28046431	0.147752	CACAGUG	BC050847|Anks1|224650|ankyrin repeat and SAM domain containing 1	NM_181413|Anks1|224650|ankyrin repeat and SAM domain containing 1	AK129094|Anks1|224650|ankyrin repeat and SAM domain containing 1	AK147273|Anks1|224650|ankyrin repeat and SAM domain containing 1
mm9_v1_chr19_+_53403902_53404133	0.147311	CACAGUG	NM_010847|Mxi1|17859|Max interacting protein 1	AK144219|Mxi1|17859|Max interacting protein 1	AK017637|Mxi1|17859|Max interacting protein 1	AK140465|Mxi1|17859|Max interacting protein 1	L38822|Mxi1|17859|Max interacting protein 1	U24674|Mxi1|17859|Max interacting protein 1
mm9_v1_chr9_-_65756482_65756602	0.145707	CACAGUG	AF539614|Trip4|56404|thyroid hormone receptor interactor 4	AK016170|Trip4|56404|thyroid hormone receptor interactor 4	AK139423|Trip4|56404|thyroid hormone receptor interactor 4	AK166192|Trip4|56404|thyroid hormone receptor interactor 4	NM_019797|Trip4|56404|thyroid hormone receptor interactor 4
mm9_v1_chr3_-_90269648_90269831	0.144443	CACAGUG	BC139767|Npr1|18160|natriuretic peptide receptor 1	BC110659|Npr1|18160|natriuretic peptide receptor 1	NM_008727|Npr1|18160|natriuretic peptide receptor 1
mm9_v1_chr2_-_167318313_167318390	0.140548	CACAGUG	AK051741|Spata2|263876|spermatogenesis associated 2	AK144826|Spata2|263876|spermatogenesis associated 2	AK171240|Spata2|263876|spermatogenesis associated 2	AK171664|Spata2|263876|spermatogenesis associated 2	AK171852|Spata2|263876|spermatogenesis associated 2	BC034597|Spata2|263876|spermatogenesis associated 2	AK156188|Spata2|263876|spermatogenesis associated 2	AK170356|Spata2|263876|spermatogenesis associated 2	AK162743|Spata2|263876|spermatogenesis associated 2	NM_170756|Spata2|263876|spermatogenesis associated 2
mm9_v1_chr2_-_79969429_79969614	0.137463	CACAGUG	AK050004|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_001159582|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AK021279|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chr4_-_129301106_129301154	0.136047	CACAGUG	AK003287|Ccdc28b|66264|coiled coil domain containing 28B	AK028262|Ccdc28b|66264|coiled coil domain containing 28B	BC028873|Ccdc28b|66264|coiled coil domain containing 28B	NM_025455|Ccdc28b|66264|coiled coil domain containing 28B	AK158016|Ccdc28b|66264|coiled coil domain containing 28B
mm9_v1_chr19_-_55173908_55173946	0.1293	CACAGUG	BC019201|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial	NM_008149|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial
mm9_v1_chr5_+_145306751_145306864	0.129109	CACAGUG	AK134806|Nptx2|53324|neuronal pentraxin 2	NM_016789|Nptx2|53324|neuronal pentraxin 2	BC026054|Nptx2|53324|neuronal pentraxin 2	AF049124|Nptx2|53324|neuronal pentraxin 2
mm9_v1_chr3_-_89049088_89049120	0.124901	CACAGUG	AK132368|Trim46|360213|tripartite motif-containing 46	AK170904|Trim46|360213|tripartite motif-containing 46	NM_001039466|Trim46|360213|tripartite motif-containing 46
mm9_v1_chr17_+_37182910_37182979	0.123967	CACAGUG	BC054735|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1	NM_019439|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1	AK156397|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1	AK159584|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1
mm9_v1_chr10_-_80488111_80488155	0.120176	CACAGUG	AK081336|Diras1|208666|DIRAS family, GTP-binding RAS-like 1	BC057556|Diras1|208666|DIRAS family, GTP-binding RAS-like 1	NM_145217|Diras1|208666|DIRAS family, GTP-binding RAS-like 1
mm9_v1_chr11_-_103128675_103128714	0.119693	CACAGUG	BC107015|Map3k14|53859|mitogen-activated protein kinase kinase kinase 14	AK172518|Map3k14|53859|mitogen-activated protein kinase kinase kinase 14	AK036200|Map3k14|53859|mitogen-activated protein kinase kinase kinase 14	NM_016896|Map3k14|53859|mitogen-activated protein kinase kinase kinase 14
mm9_v1_chr8_+_24168730_24168785	0.116269	CACAGUG	AK147483|Ank1|11733|ankyrin 1, erythroid	NM_031158|Ank1|11733|ankyrin 1, erythroid	X69063|Ank1|11733|ankyrin 1, erythroid	AK147597|Ank1|11733|ankyrin 1, erythroid
mm9_v1_chrX_+_45694534_45694534	0.114936	CACAGUG	NM_178782|Bcorl1|320376|BCL6 co-repressor-like 1
mm9_v1_chr9_-_4796141_4796273	0.114444	CACAGUG	BC060697|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	AK031568|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	AK047179|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	AK032103|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	NM_001113180|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	NM_001113181|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	NM_019691|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm9_v1_chr13_-_99696254_99696340	0.113664	CACAGUG	AK030580|Tnpo1|238799|transportin 1	AK087194|Tnpo1|238799|transportin 1	AK037001|Tnpo1|238799|transportin 1	AK029953|Tnpo1|238799|transportin 1	NM_178716|Tnpo1|238799|transportin 1
mm9_v1_chr16_+_92058498_92058582	0.112672	CACAGUG	AK165590|Mrps6|121022|mitochondrial ribosomal protein S6	AB049943|Mrps6|121022|mitochondrial ribosomal protein S6	AY061856|Mrps6|121022|mitochondrial ribosomal protein S6	AK144718|Slc5a3|53881|solute carrier family 5 (inositol transporters), member 3	AK166374|Mrps6|121022|mitochondrial ribosomal protein S6	AK167304|Mrps6|121022|mitochondrial ribosomal protein S6	NM_017391|Slc5a3|53881|solute carrier family 5 (inositol transporters), member 3	AK167316|Mrps6|121022|mitochondrial ribosomal protein S6	BC027271|Mrps6|121022|mitochondrial ribosomal protein S6	NM_080456|Mrps6|121022|mitochondrial ribosomal protein S6
mm9_v1_chr8_+_128822478_128822500	0.0999495	CACAGUG	NM_175434|Slc35f3|210027|solute carrier family 35, member F3	AK046359|Slc35f3|210027|solute carrier family 35, member F3
mm9_v1_chr7_+_52690164_52690415	0.0981826	CACAGUG	NM_030678|Gys1|14936|glycogen synthase 1, muscle	AK169344|Gys1|14936|glycogen synthase 1, muscle	AK170404|Gys1|14936|glycogen synthase 1, muscle	AK171426|Gys1|14936|glycogen synthase 1, muscle	AK171148|Gys1|14936|glycogen synthase 1, muscle	AK170585|Gys1|14936|glycogen synthase 1, muscle	X94616|Gys1|14936|glycogen synthase 1, muscle	BC131687|Gys1|14936|glycogen synthase 1, muscle	BC131688|Gys1|14936|glycogen synthase 1, muscle	BC152550|Gys1|14936|glycogen synthase 1, muscle	U53218|Gys1|14936|glycogen synthase 1, muscle	BC019389|Gys1|14936|glycogen synthase 1, muscle
mm9_v1_chr6_+_95067873_95067899	0.096158	CACAGUG	AK142080|Kbtbd8|243574|kelch repeat and BTB (POZ) domain containing 8	NM_001008785|Kbtbd8|243574|kelch repeat and BTB (POZ) domain containing 8	NM_001102670|Kbtbd8|243574|kelch repeat and BTB (POZ) domain containing 8
mm9_v1_chr2_+_102498839_102498845	0.0954654	CACAGUG	AK134609|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077514|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AK140095|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr13_-_115178227_115178301	0.0950511	CACAGUG	AF124785|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK020552|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	BC004618|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK011124|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK020108|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	NM_010887|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4
mm9_v1_chr16_-_50432421_50432504	0.0897892	CACAGUG	AK044855|Bbx|70508|bobby sox homolog (Drosophila)	BC019456|Bbx|70508|bobby sox homolog (Drosophila)	BC066821|Bbx|70508|bobby sox homolog (Drosophila)	AF276951|Bbx|70508|bobby sox homolog (Drosophila)	BC064763|Bbx|70508|bobby sox homolog (Drosophila)	BC057869|Bbx|70508|bobby sox homolog (Drosophila)	AK157813|Bbx|70508|bobby sox homolog (Drosophila)	AK049516|Bbx|70508|bobby sox homolog (Drosophila)	AF454943|Bbx|70508|bobby sox homolog (Drosophila)	AK017487|Bbx|70508|bobby sox homolog (Drosophila)	AK029747|Bbx|70508|bobby sox homolog (Drosophila)	AK167724|Bbx|70508|bobby sox homolog (Drosophila)	NM_027444|Bbx|70508|bobby sox homolog (Drosophila)
mm9_v1_chr11_-_97141747_97141925	0.0895949	CACAGUG	BC009653|Npepps|19155|aminopeptidase puromycin sensitive	AK138772|Npepps|19155|aminopeptidase puromycin sensitive	U35646|Npepps|19155|aminopeptidase puromycin sensitive	BC086798|Npepps|19155|aminopeptidase puromycin sensitive	BC098212|Npepps|19155|aminopeptidase puromycin sensitive	NM_008942|Npepps|19155|aminopeptidase puromycin sensitive
mm9_v1_chr15_+_100446018_100446129	0.0886973	CACAGUG	AK002595|Dazap2|23994|DAZ associated protein 2	AK145398|Dazap2|23994|DAZ associated protein 2	AK146970|Dazap2|23994|DAZ associated protein 2	L10906|Dazap2|23994|DAZ associated protein 2	AK088916|Dazap2|23994|DAZ associated protein 2	AK132139|Dazap2|23994|DAZ associated protein 2	AK137246|Dazap2|23994|DAZ associated protein 2	BC014808|Dazap2|23994|DAZ associated protein 2	NM_011873|Dazap2|23994|DAZ associated protein 2	BC083347|Dazap2|23994|DAZ associated protein 2	AF085348|Dazap2|23994|DAZ associated protein 2
mm9_v1_chr12_+_54349663_54349663	0.0886581	CACAGUG	AF173871|Npas3|27386|neuronal PAS domain protein 3	BC120885|Npas3|27386|neuronal PAS domain protein 3	BC148199|Npas3|27386|neuronal PAS domain protein 3	NM_013780|Npas3|27386|neuronal PAS domain protein 3
mm9_v1_chr14_-_69903072_69903169	0.087431	CACAGUG	AF288621|Slc25a37|67712|solute carrier family 25, member 37	AF361699|Slc25a37|67712|solute carrier family 25, member 37	AK050414|Slc25a37|67712|solute carrier family 25, member 37	NM_026331|Slc25a37|67712|solute carrier family 25, member 37	AK006155|Slc25a37|67712|solute carrier family 25, member 37
mm9_v1_chr8_-_60131768_60131885	0.0862017	CACAGUG	AF349573|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK030683|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK033427|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK036523|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	BC052461|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK041791|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_001167981|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_144731|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7
mm9_v1_chr17_+_8533573_8533603	0.0861614	CACAGUG	AK039752|Prr18|320111|proline rich region 18	NM_178774|Prr18|320111|proline rich region 18
mm9_v1_chr5_-_87061409_87061448	0.0837184	CACAGUG	AK029032|Tmprss11f|243083|transmembrane protease, serine 11f	AK028587|Tmprss11f|243083|transmembrane protease, serine 11f	AK028447|Tmprss11f|243083|transmembrane protease, serine 11f	AK036957|Tmprss11f|243083|transmembrane protease, serine 11f	NM_178730|Tmprss11f|243083|transmembrane protease, serine 11f
mm9_v1_chr13_-_59777105_59777155	0.0834986	CACAGUG	BC011152|Golm1|105348|golgi membrane protein 1	AK167646|Golm1|105348|golgi membrane protein 1	AK160475|Golm1|105348|golgi membrane protein 1	BC098486|Golm1|105348|golgi membrane protein 1	NM_001035122|Golm1|105348|golgi membrane protein 1	NM_027307|Golm1|105348|golgi membrane protein 1	AK133865|Golm1|105348|golgi membrane protein 1
mm9_v1_chr8_+_24085309_24085353	0.0831559	CACAGUG	AK158131|Ank1|11733|ankyrin 1, erythroid	AK147278|Ank1|11733|ankyrin 1, erythroid	NM_001110783|Ank1|11733|ankyrin 1, erythroid
mm9_v1_chr9_-_26837634_26837702	0.0827261	CACAGUG	AK155578|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	AK171154|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	BC049180|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	AK031589|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	NM_178027|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)
mm9_v1_chr19_+_53384990_53385011	0.0825439	CACAGUG	NM_001008542|Mxi1|17859|Max interacting protein 1	AK154538|Mxi1|17859|Max interacting protein 1	BC064453|Mxi1|17859|Max interacting protein 1
mm9_v1_chr12_-_99816091_99816149	0.0783566	CACAGUG	BC132487|Kcnk10|72258|potassium channel, subfamily K, member 10	BC137869|Kcnk10|72258|potassium channel, subfamily K, member 10	AK082153|Kcnk10|72258|potassium channel, subfamily K, member 10	NM_029911|Kcnk10|72258|potassium channel, subfamily K, member 10
mm9_v1_chr15_+_102236709_102236810	0.0777025	CACAGUG	EF200005|Sp1|20683|trans-acting transcription factor 1	NM_013672|Sp1|20683|trans-acting transcription factor 1	AF022363|Sp1|20683|trans-acting transcription factor 1	S79832|Sp1|20683|trans-acting transcription factor 1	AF062566|Sp1|20683|trans-acting transcription factor 1
mm9_v1_chr18_+_23910833_23910892	0.076183	CACAGUG	AK158570|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	NM_001162942|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK168834|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr8_+_113245378_113245384	0.0759333	CACAGUG	BC060632|Mtss1l|244654|metastasis suppressor 1-like	NM_198625|Mtss1l|244654|metastasis suppressor 1-like
mm9_v1_chr10_-_58138401_58138443	0.0707547	CACAGUG	BC068315|Edar|13608|ectodysplasin-A receptor	AF160502|Edar|13608|ectodysplasin-A receptor	NM_010100|Edar|13608|ectodysplasin-A receptor
mm9_v1_chr13_-_55671276_55671335	0.0670192	CACAGUG	AK173303|Fam193b|212483|family with sequence similarity 193, member B	BC025483|Fam193b|212483|family with sequence similarity 193, member B	NM_001162881|Fam193b|212483|family with sequence similarity 193, member B
mm9_v1_chr3_+_45182311_45182350	0.0654632	CACAGUG	BC037259|Pcdh10|18526|protocadherin 10	NM_001098170|Pcdh10|18526|protocadherin 10	NM_001098171|Pcdh10|18526|protocadherin 10	NM_001098172|Pcdh10|18526|protocadherin 10	NM_011043|Pcdh10|18526|protocadherin 10	AK081621|Pcdh10|18526|protocadherin 10	AK081977|Pcdh10|18526|protocadherin 10	BC026712|Pcdh10|18526|protocadherin 10	AK122503|Pcdh10|18526|protocadherin 10
mm9_v1_chr4_+_21774729_21774865	0.0628629	CACAGUG	NM_025669|Sfrs18|66625|serine/arginine-rich splicing factor 18	BC141031|Sfrs18|66625|serine/arginine-rich splicing factor 18
mm9_v1_chr7_+_71432538_71432641	0.062788	CACAGUG	AK088715|Mtmr10|233315|myotubularin related protein 10	NM_172742|Mtmr10|233315|myotubularin related protein 10	BC041672|Mtmr10|233315|myotubularin related protein 10
mm9_v1_chr15_-_79518160_79518352	0.0534246	CACAGUG	AK004913|Josd1|74158|Josephin domain containing 1	NM_028792|Josd1|74158|Josephin domain containing 1	AK154799|Josd1|74158|Josephin domain containing 1
mm9_v1_chr3_-_89049756_89049818	0.0520455	CACAGUG	BC082299|Trim46|360213|tripartite motif-containing 46	NM_183037|Trim46|360213|tripartite motif-containing 46
mm9_v1_chr14_+_60997104_60997126	0.0505306	CACAGUG	NM_001164705|Fam123a|72125|family with sequence similarity 123, member A	NM_028113|Fam123a|72125|family with sequence similarity 123, member A
mm9_v1_chr5_-_111239017_111239099	0.0503899	CACAGUG	BC059835|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK148317|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK156534|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	BC057121|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	NM_009469|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)
mm9_v1_chr2_+_102546576_102546605	0.0494514	CACAGUG	AB007812|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	BC138255|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	BC138256|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077515|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_011393|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AB007811|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr4_+_118100682_118100801	0.0463311	CACAGUG	NM_001039175|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	NM_019422|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK156003|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK171217|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK135348|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	BC096673|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK003743|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
mm9_v1_chr16_+_33380860_33381006	0.0440328	CACAGUG	NM_011749|Zfp148|22661|zinc finger protein 148	AF316548|Zfp148|22661|zinc finger protein 148	X98096|Zfp148|22661|zinc finger protein 148	BC026144|Zfp148|22661|zinc finger protein 148
mm9_v1_chr9_+_57787915_57787952	0.0415668	CACAGUG	AK156123|Sema7a|20361|sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A	BC057875|Sema7a|20361|sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A	NM_011352|Sema7a|20361|sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A	AF030699|Sema7a|20361|sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A	AB017532|Sema7a|20361|sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A	AF176670|Sema7a|20361|sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A
mm9_v1_chrX_+_69208336_69208359	0.0350337	CACAGUG	BC060135|Prrg3|208748|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)	NM_001081135|Prrg3|208748|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
mm9_v1_chr11_+_11014018_11014018	0.034361	CACAGUG	AK141514|Vwc2|319922|von Willebrand factor C domain containing 2	NM_177033|Vwc2|319922|von Willebrand factor C domain containing 2
mm9_v1_chr2_+_173902521_173902654	0.0333624	CACAGUG	AK078110|Stx16|228960|syntaxin 16	NM_001102423|Stx16|228960|syntaxin 16	NM_001102424|Stx16|228960|syntaxin 16	NM_001102425|Stx16|228960|syntaxin 16	NM_172675|Stx16|228960|syntaxin 16	BC094436|Stx16|228960|syntaxin 16	BC095989|Stx16|228960|syntaxin 16	BC138544|Stx16|228960|syntaxin 16
mm9_v1_chr14_-_102008407_102008407	0.031837	CACAGUG	AK039337|Tbc1d4|210789|TBC1 domain family, member 4	NM_001081278|Tbc1d4|210789|TBC1 domain family, member 4
mm9_v1_chr5_+_77403725_77403746	0.0301958	CACAGUG	AK133784|Srp72|66661|signal recognition particle 72	NM_025691|Srp72|66661|signal recognition particle 72	BC003434|Srp72|66661|signal recognition particle 72	AK138875|Srp72|66661|signal recognition particle 72	BC019196|Srp72|66661|signal recognition particle 72
mm9_v1_chr8_+_26896009_26896073	0.0292544	CACAGUG	AK048497|Lsm1|67207|LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK041290|Lsm1|67207|LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_026032|Lsm1|67207|LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr14_-_30534966_30535111	0.0285015	CACAGUG	AJ010949|Cacna2d3|12294|calcium channel, voltage-dependent, alpha2/delta subunit 3	NM_009785|Cacna2d3|12294|calcium channel, voltage-dependent, alpha2/delta subunit 3
mm9_v1_chr13_-_100874021_100874024	0.0284418	CACAGUG	AK045292|Bdp1|544971|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	NM_001081061|Bdp1|544971|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
mm9_v1_chr11_-_95926589_95926740	0.0265325	CACAGUG	AK077793|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	AK149770|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	NM_172300|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)
mm9_v1_chr5_-_38108301_38108391	0.0221163	CACAGUG	BC052404|Stk32b|64293|serine/threonine kinase 32B	BC058412|Stk32b|64293|serine/threonine kinase 32B	BC056396|Stk32b|64293|serine/threonine kinase 32B	AK082468|Stk32b|64293|serine/threonine kinase 32B	NM_022416|Stk32b|64293|serine/threonine kinase 32B
mm9_v1_chr18_+_32322742_32322855	0.0216884	CACAGUG	AK036364|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	NM_011946|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	AK143367|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	AK050667|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	U43186|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2
mm9_v1_chr2_+_106533615_106533705	0.0210269	CACAGUG	AK161666|Mpped2|77015|metallophosphoesterase domain containing 2	NM_001143683|Mpped2|77015|metallophosphoesterase domain containing 2	BC020182|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr17_-_10512217_10512250	0.0158533	CACAGUG	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr18_+_23912225_23912225	0.00844604	CACAGUG	AK028823|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	NM_001162941|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr2_-_160698705_160698728	0.00786515	CACAGUG	AK143296|Zhx3|320799|zinc fingers and homeoboxes 3	BC058111|Zhx3|320799|zinc fingers and homeoboxes 3	NM_177263|Zhx3|320799|zinc fingers and homeoboxes 3
mm9_v1_chr1_-_135975681_135975731	0.00275404	CACAGUG	BC132259|Btg2|12227|B-cell translocation gene 2, anti-proliferative	BC138639|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK088976|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169436|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK133796|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169269|Btg2|12227|B-cell translocation gene 2, anti-proliferative	NM_007570|Btg2|12227|B-cell translocation gene 2, anti-proliferative
mm9_v1_chr13_+_41701584_41701584	0.00196084	CACAGUG	NM_001163572|Tmem170b|621976|transmembrane protein 170B
mm9_v1_chr2_+_10294062_10294208	0.000822581	CACAGUG	AK040600|Sfmbt2|353282|Scm-like with four mbt domains 2	NM_001198809|Sfmbt2|353282|Scm-like with four mbt domains 2	NM_177386|Sfmbt2|353282|Scm-like with four mbt domains 2	AK052339|Sfmbt2|353282|Scm-like with four mbt domains 2	BC115510|Sfmbt2|353282|Scm-like with four mbt domains 2	BC115511|Sfmbt2|353282|Scm-like with four mbt domains 2	AK147651|Sfmbt2|353282|Scm-like with four mbt domains 2
mm9_v1_chr4_-_129349948_129350020	9.24383e-06	CACAGUG	AK084212|Kpna6|16650|karyopherin (importin) alpha 6	AK046371|Kpna6|16650|karyopherin (importin) alpha 6	AK154882|Kpna6|16650|karyopherin (importin) alpha 6	NM_008468|Kpna6|16650|karyopherin (importin) alpha 6
