mm9_v1_chr11_+_104092749_104092776	22.6314	CAGCAGG	M18775|Mapt|17762|microtubule-associated protein tau	M18776|Mapt|17762|microtubule-associated protein tau	NM_001038609|Mapt|17762|microtubule-associated protein tau	NM_010838|Mapt|17762|microtubule-associated protein tau	AK078167|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr13_+_74146852_74146948	16.2316	CAGCAGG	NM_182839|Tppp|72948|tubulin polymerization promoting protein	AK141543|Tppp|72948|tubulin polymerization promoting protein	BC054803|Tppp|72948|tubulin polymerization promoting protein
mm9_v1_chr2_-_151458256_151458277	15.7839	CAGCAGG	AK032279|Snph|241727|syntaphilin	AK122262|Snph|241727|syntaphilin	NM_198214|Snph|241727|syntaphilin
mm9_v1_chr19_+_4711220_4711230	15.5653	CAGCAGG	BC079860|Spnb3|20743|spectrin beta 3	NM_021287|Spnb3|20743|spectrin beta 3
mm9_v1_chr8_+_12949417_12949485	14.4708	CAGCAGG	NM_001159485|Mcf2l|17207|mcf.2 transforming sequence-like	NM_001159486|Mcf2l|17207|mcf.2 transforming sequence-like	AK170186|Mcf2l|17207|mcf.2 transforming sequence-like	AK170558|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr8_-_9771020_9771022	13.8388	CAGCAGG	BC117535|Fam155a|270028|family with sequence similarity 155, member A	AK032202|Fam155a|270028|family with sequence similarity 155, member A	NM_173446|Fam155a|270028|family with sequence similarity 155, member A
mm9_v1_chr9_-_91260619_91260636	12.2827	CAGCAGG	NM_009573|Zic1|22771|zinc finger protein of the cerebellum 1
mm9_v1_chr4_+_138011061_138011100	11.8919	CAGCAGG	NM_025451|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1	AY523601|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm9_v1_chr10_+_111708176_111708178	11.7599	CAGCAGG	AK045425|Kcnc2|268345|potassium voltage gated channel, Shaw-related subfamily, member 2	BC116289|Kcnc2|268345|potassium voltage gated channel, Shaw-related subfamily, member 2	BC116290|Kcnc2|268345|potassium voltage gated channel, Shaw-related subfamily, member 2	NM_001025581|Kcnc2|268345|potassium voltage gated channel, Shaw-related subfamily, member 2
mm9_v1_chr8_+_12915892_12915957	11.6274	CAGCAGG	NM_178076|Mcf2l|17207|mcf.2 transforming sequence-like	AK082849|Mcf2l|17207|mcf.2 transforming sequence-like	AK048898|Mcf2l|17207|mcf.2 transforming sequence-like	BC058622|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr1_+_66221851_66221903	11.5896	CAGCAGG	AK166380|Mtap2|17756|microtubule-associated protein 2	BC052446|Mtap2|17756|microtubule-associated protein 2	NM_001039934|Mtap2|17756|microtubule-associated protein 2	NM_008632|Mtap2|17756|microtubule-associated protein 2	BC150945|Mtap2|17756|microtubule-associated protein 2
mm9_v1_chr3_-_97628441_97628543	11.5839	CAGCAGG	AK031066|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_001110163|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr6_+_71657791_71657963	11.3956	CAGCAGG	AK035238|Reep1|52250|receptor accessory protein 1	AK045056|Reep1|52250|receptor accessory protein 1	NM_178608|Reep1|52250|receptor accessory protein 1	AK053158|Reep1|52250|receptor accessory protein 1	AK136916|Reep1|52250|receptor accessory protein 1	BC046826|Reep1|52250|receptor accessory protein 1	AY562229|Reep1|52250|receptor accessory protein 1
mm9_v1_chr9_-_107569654_107569729	11.2437	CAGCAGG	AF159856|Slc38a3|76257|solute carrier family 38, member 3	BC054846|Slc38a3|76257|solute carrier family 38, member 3	NM_023805|Slc38a3|76257|solute carrier family 38, member 3	AK002607|Slc38a3|76257|solute carrier family 38, member 3	BC010678|Slc38a3|76257|solute carrier family 38, member 3
mm9_v1_chr9_-_54349409_54349432	11.2162	CAGCAGG	AK170274|Dmxl2|235380|Dmx-like 2	AK048831|Dmxl2|235380|Dmx-like 2	AK053672|Dmxl2|235380|Dmx-like 2	NM_172771|Dmxl2|235380|Dmx-like 2
mm9_v1_chr18_-_43847367_43847426	11.0563	CAGCAGG	AK133750|Jakmip2|76217|janus kinase and microtubule interacting protein 2	NM_001163637|Jakmip2|76217|janus kinase and microtubule interacting protein 2
mm9_v1_chr7_-_107520359_107520405	11.0532	CAGCAGG	AK146051|Ppme1|72590|protein phosphatase methylesterase 1	BC029064|Ppme1|72590|protein phosphatase methylesterase 1	BC014867|Ppme1|72590|protein phosphatase methylesterase 1	NM_028292|Ppme1|72590|protein phosphatase methylesterase 1
mm9_v1_chrX_-_92361778_92361824	11.0028	CAGCAGG	AK038840|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	AK122280|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	AK139416|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	NM_001033329|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9
mm9_v1_chr7_+_133968166_133968166	10.4488	CAGCAGG	BC055444|Fam57b|68952|family with sequence similarity 57, member B	NM_001146347|Fam57b|68952|family with sequence similarity 57, member B
mm9_v1_chr3_-_97692613_97692634	10.2573	CAGCAGG	BC028274|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	BC141185|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	BC145504|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_001039376|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr15_+_82105322_82105458	10.157	CAGCAGG	AF104411|Sept3|24050|septin 3	NM_011889|Sept3|24050|septin 3	BC055738|Sept3|24050|septin 3
mm9_v1_chr14_-_55531726_55531986	10.1288	CAGCAGG	BC062878|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AB012808|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AK007059|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	BC005727|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AK163116|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	NM_021551|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17
mm9_v1_chr2_+_164313584_164313634	10.0222	CAGCAGG	NM_001048229|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr7_+_134094045_134094242	9.94305	CAGCAGG	AK034088|Sez6l2|233878|seizure related 6 homolog like 2	AK165738|Sez6l2|233878|seizure related 6 homolog like 2	BC096615|Sez6l2|233878|seizure related 6 homolog like 2	BC011475|Sez6l2|233878|seizure related 6 homolog like 2	NM_144926|Sez6l2|233878|seizure related 6 homolog like 2
mm9_v1_chr18_+_67293403_67293479	9.81381	CAGCAGG	AK032407|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type	AY179169|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type	NM_010307|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type
mm9_v1_chr7_+_133966816_133966816	9.77106	CAGCAGG	AK131642|Fam57b|68952|family with sequence similarity 57, member B	NM_029978|Fam57b|68952|family with sequence similarity 57, member B
mm9_v1_chr5_-_51945054_51945159	9.67778	CAGCAGG	BC066868|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AB061324|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AF049330|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK143753|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK138668|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	NM_008904|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm9_v1_chr15_+_89330287_89330287	9.55912	CAGCAGG	AB231013|Shank3|58234|SH3/ankyrin domain gene 3	NM_021423|Shank3|58234|SH3/ankyrin domain gene 3
mm9_v1_chr2_+_65508501_65508501	9.54086	CAGCAGG	NM_001099298|Scn2a1|110876|sodium channel, voltage-gated, type II, alpha 1
mm9_v1_chr2_+_164312376_164312376	9.33249	CAGCAGG	AK003735|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2	NM_001048228|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr7_+_19876447_19876478	9.31909	CAGCAGG	NM_001025364|Rtn2|20167|reticulon 2 (Z-band associated protein)	AK160500|Rtn2|20167|reticulon 2 (Z-band associated protein)	AF038539|Rtn2|20167|reticulon 2 (Z-band associated protein)
mm9_v1_chr15_-_75397601_75397641	9.26549	CAGCAGG	NM_011837|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr9_+_120058842_120058868	9.11199	CAGCAGG	AK013799|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK019323|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK028057|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK083103|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK140055|Mobp|17433|myelin-associated oligodendrocytic basic protein	BC048492|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_001039364|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_001039365|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_008614|Mobp|17433|myelin-associated oligodendrocytic basic protein
mm9_v1_chr2_-_65405546_65405588	8.9868	CAGCAGG	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr9_-_21856445_21856470	8.9418	CAGCAGG	U29148|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	BC052097|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	AK090281|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	NM_010487|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)
mm9_v1_chr15_-_75397243_75397344	8.87028	CAGCAGG	AF127091|Ly6h|23934|lymphocyte antigen 6 complex, locus H	BC028758|Ly6h|23934|lymphocyte antigen 6 complex, locus H	NM_001135688|Ly6h|23934|lymphocyte antigen 6 complex, locus H	AK021002|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr1_+_78306890_78306952	8.78107	CAGCAGG	BC049995|Sgpp2|433323|sphingosine-1-phosphate phosphotase 2	NM_001004173|Sgpp2|433323|sphingosine-1-phosphate phosphotase 2
mm9_v1_chr9_+_43892984_43893007	8.66795	CAGCAGG	NM_198091|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr1_+_174271338_174271373	8.45741	CAGCAGG	AK048864|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10	NM_001039484|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10
mm9_v1_chr2_-_104250490_104250490	8.44204	CAGCAGG	NM_001033347|D430041D05Rik|241589|RIKEN cDNA D430041D05 gene
mm9_v1_chr12_+_90191833_90191842	8.32309	CAGCAGG	NM_172544|Nrxn3|18191|neurexin III	AK032126|Nrxn3|18191|neurexin III
mm9_v1_chr2_-_66278870_66278908	8.31582	CAGCAGG	AK046001|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	AK134744|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	NM_018733|Scn1a|20265|sodium channel, voltage-gated, type I, alpha
mm9_v1_chr7_+_19868009_19868016	8.26581	CAGCAGG	AK144271|Rtn2|20167|reticulon 2 (Z-band associated protein)	BC031370|Rtn2|20167|reticulon 2 (Z-band associated protein)	NM_013648|Rtn2|20167|reticulon 2 (Z-band associated protein)	AF038538|Rtn2|20167|reticulon 2 (Z-band associated protein)
mm9_v1_chr7_+_96781322_96781395	8.17836	CAGCAGG	AK032196|Me3|109264|malic enzyme 3, NADP(+)-dependent, mitochondrial	NM_181407|Me3|109264|malic enzyme 3, NADP(+)-dependent, mitochondrial	AK080798|Me3|109264|malic enzyme 3, NADP(+)-dependent, mitochondrial
mm9_v1_chr14_+_70857227_70857399	8.09939	CAGCAGG	AK049900|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	NM_145981|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	BC030494|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	BC139360|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein
mm9_v1_chr18_-_74224541_74224647	7.98171	CAGCAGG	AK157930|Mapk4|225724|mitogen-activated protein kinase 4	AK046051|Mapk4|225724|mitogen-activated protein kinase 4	AK079654|Mapk4|225724|mitogen-activated protein kinase 4	NM_172632|Mapk4|225724|mitogen-activated protein kinase 4
mm9_v1_chr4_-_151235861_151235879	7.9763	CAGCAGG	AK158710|Camta1|100072|calmodulin binding transcription activator 1	NM_001081557|Camta1|100072|calmodulin binding transcription activator 1	NM_001195565|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr18_+_65183180_65183324	7.95683	CAGCAGG	NM_031881|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr15_-_75397030_75397077	7.90798	CAGCAGG	AK034884|Ly6h|23934|lymphocyte antigen 6 complex, locus H	NM_001135689|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr11_-_74403603_74403659	7.89006	CAGCAGG	NM_001015046|Rap1gap2|380711|RAP1 GTPase activating protein 2
mm9_v1_chr10_+_89336253_89336253	7.83501	CAGCAGG	NM_001128086|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr9_+_43877511_43877533	7.76796	CAGCAGG	NM_016808|Usp2|53376|ubiquitin specific peptidase 2	BC017517|Usp2|53376|ubiquitin specific peptidase 2	AY255640|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr18_+_39152776_39152837	7.75679	CAGCAGG	AK011368|Arhgap26|71302|Rho GTPase activating protein 26	NM_175164|Arhgap26|71302|Rho GTPase activating protein 26
mm9_v1_chr2_+_164311639_164311740	7.74507	CAGCAGG	NM_001048227|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr15_-_79635138_79635146	7.74207	CAGCAGG	BC058962|Nptxr|73340|neuronal pentraxin receptor	BC098199|Nptxr|73340|neuronal pentraxin receptor	NM_030689|Nptxr|73340|neuronal pentraxin receptor	AK147605|Nptxr|73340|neuronal pentraxin receptor
mm9_v1_chr9_+_108710676_108710814	7.71505	CAGCAGG	BC064818|Nckipsd|80987|NCK interacting protein with SH3 domain	NM_030729|Nckipsd|80987|NCK interacting protein with SH3 domain	AK134725|Nckipsd|80987|NCK interacting protein with SH3 domain	AF130313|Nckipsd|80987|NCK interacting protein with SH3 domain
mm9_v1_chr10_+_90038471_90038471	7.69602	CAGCAGG	BC098373|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177397|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr17_-_25707599_25707638	7.51084	CAGCAGG	BC043704|Sox8|20681|SRY-box containing gene 8	BC085619|Sox8|20681|SRY-box containing gene 8	AK032459|Sox8|20681|SRY-box containing gene 8	AK033460|Sox8|20681|SRY-box containing gene 8	AK034231|Sox8|20681|SRY-box containing gene 8	AK046473|Sox8|20681|SRY-box containing gene 8	AK053716|Sox8|20681|SRY-box containing gene 8	AK145294|Sox8|20681|SRY-box containing gene 8	NM_011447|Sox8|20681|SRY-box containing gene 8
mm9_v1_chr9_+_43875103_43875168	7.46031	CAGCAGG	NM_198092|Usp2|53376|ubiquitin specific peptidase 2	AK138799|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr6_+_86799460_86799754	7.32713	CAGCAGG	AK147363|Aak1|269774|AP2 associated kinase 1	NM_001040106|Aak1|269774|AP2 associated kinase 1	NM_177762|Aak1|269774|AP2 associated kinase 1	AK158879|Aak1|269774|AP2 associated kinase 1	BC141176|Aak1|269774|AP2 associated kinase 1
mm9_v1_chr9_+_47338431_47338446	7.27377	CAGCAGG	AB052293|Cadm1|54725|cell adhesion molecule 1	AB377192|Cadm1|54725|cell adhesion molecule 1	AK053839|Cadm1|54725|cell adhesion molecule 1	NM_001025600|Cadm1|54725|cell adhesion molecule 1	NM_018770|Cadm1|54725|cell adhesion molecule 1	NM_207675|Cadm1|54725|cell adhesion molecule 1	NM_207676|Cadm1|54725|cell adhesion molecule 1	AF539424|Cadm1|54725|cell adhesion molecule 1	BC095986|Cadm1|54725|cell adhesion molecule 1	BC069937|Cadm1|54725|cell adhesion molecule 1	BC057125|Cadm1|54725|cell adhesion molecule 1
mm9_v1_chr2_+_121115337_121115465	7.24915	CAGCAGG	AF182213|Mtap1a|17754|microtubule-associated protein 1 A	NM_032393|Mtap1a|17754|microtubule-associated protein 1 A	AK044057|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr2_-_121176719_121176752	7.19024	CAGCAGG	AK122264|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	AK083140|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	NM_178795|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	BC065138|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	AF502585|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1
mm9_v1_chr7_+_149135647_149135669	7.02189	CAGCAGG	AY660739|Brsk2|75770|BR serine/threonine kinase 2	NM_029426|Brsk2|75770|BR serine/threonine kinase 2
mm9_v1_chr2_+_164311755_164311970	6.94776	CAGCAGG	BC030298|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2	NM_026797|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr10_-_80306743_80306828	6.93341	CAGCAGG	BC072620|Lingo3|237403|leucine rich repeat and Ig domain containing 3	NM_001013758|Lingo3|237403|leucine rich repeat and Ig domain containing 3
mm9_v1_chr6_+_48487567_48487613	6.90218	CAGCAGG	NM_133764|Atp6v0e2|76252|ATPase, H+ transporting, lysosomal V0 subunit E2	BC010790|Atp6v0e2|76252|ATPase, H+ transporting, lysosomal V0 subunit E2
mm9_v1_chr15_-_84277488_84277526	6.87366	CAGCAGG	BC119234|1810041L15Rik|72301|RIKEN cDNA 1810041L15 gene	BC120551|1810041L15Rik|72301|RIKEN cDNA 1810041L15 gene	BC062953|1810041L15Rik|72301|RIKEN cDNA 1810041L15 gene	NM_001163145|1810041L15Rik|72301|RIKEN cDNA 1810041L15 gene
mm9_v1_chr16_-_20241392_20241432	6.84084	CAGCAGG	AK079603|Map6d1|208158|MAP6 domain containing 1	BC116220|Map6d1|208158|MAP6 domain containing 1	BC116221|Map6d1|208158|MAP6 domain containing 1	AK163656|Map6d1|208158|MAP6 domain containing 1	NM_198599|Map6d1|208158|MAP6 domain containing 1
mm9_v1_chrX_+_38754480_38754557	6.81163	CAGCAGG	NM_016886|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	BC086678|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr19_+_8738494_8738608	6.73924	CAGCAGG	AK138282|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	NM_001112697|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	NM_007698|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	BC094242|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	AJ006521|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS
mm9_v1_chr6_-_13789847_13789902	6.71612	CAGCAGG	BC065154|Gpr85|64450|G protein-coupled receptor 85	NM_145066|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr10_+_90039435_90039495	6.65709	CAGCAGG	AK032211|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177396|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177398|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_181398|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK163750|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK132228|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK019361|Ipw|16353|imprinted gene in the Prader-Willi syndrome region	AK049899|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr13_+_118391126_118391233	6.62709	CAGCAGG	AK158322|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1	NM_010408|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1
mm9_v1_chr9_+_56266618_56266679	6.62336	CAGCAGG	AK088542|Hmg20a|66867|high mobility group 20A	AK032790|Hmg20a|66867|high mobility group 20A	AK039222|Hmg20a|66867|high mobility group 20A	AK004596|Hmg20a|66867|high mobility group 20A	AK086346|Hmg20a|66867|high mobility group 20A	AK154075|Hmg20a|66867|high mobility group 20A	BC013804|Hmg20a|66867|high mobility group 20A	DQ182735|Hmg20a|66867|high mobility group 20A	NM_025812|Hmg20a|66867|high mobility group 20A	AL355705|Hmg20a|66867|high mobility group 20A
mm9_v1_chr14_+_28435613_28435695	6.61276	CAGCAGG	AK147213|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	BC056760|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	NM_177814|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	AK032385|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2
mm9_v1_chr7_-_148623725_148623772	6.61145	CAGCAGG	BC050887|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	NM_026646|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm9_v1_chr8_+_121970569_121970618	6.57251	CAGCAGG	AF411253|Necab2|117148|N-terminal EF-hand calcium binding protein 2	NM_054095|Necab2|117148|N-terminal EF-hand calcium binding protein 2
mm9_v1_chr10_+_105907394_105907408	6.56334	CAGCAGG	BC065133|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	EU568870|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	NM_177373|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK030621|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK220491|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm9_v1_chr2_+_121121189_121121220	6.53105	CAGCAGG	NM_001173506|Mtap1a|17754|microtubule-associated protein 1 A	AF182212|Mtap1a|17754|microtubule-associated protein 1 A	BC028853|Mtap1a|17754|microtubule-associated protein 1 A	AK160546|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr2_-_32702729_32702816	6.39082	CAGCAGG	NM_009295|Stxbp1|20910|syntaxin binding protein 1	NM_001113569|Stxbp1|20910|syntaxin binding protein 1
mm9_v1_chr16_+_38089086_38089192	6.29978	CAGCAGG	AB066114|Gsk3b|56637|glycogen synthase kinase 3 beta	NM_019827|Gsk3b|56637|glycogen synthase kinase 3 beta	BC060743|Gsk3b|56637|glycogen synthase kinase 3 beta
mm9_v1_chr6_+_38613031_38613110	6.2769	CAGCAGG	NM_001101507|Clec2l|665180|C-type lectin domain family, member L
mm9_v1_chr6_+_91106773_91106820	6.25213	CAGCAGG	AK045994|Hdac11|232232|histone deacetylase 11	BC016208|Hdac11|232232|histone deacetylase 11	NM_144919|Hdac11|232232|histone deacetylase 11
mm9_v1_chr8_-_63462080_63462110	6.22802	CAGCAGG	AK159698|Clcn3|12725|chloride channel 3	AK036501|Clcn3|12725|chloride channel 3	NM_007711|Clcn3|12725|chloride channel 3	NM_173873|Clcn3|12725|chloride channel 3	NM_173874|Clcn3|12725|chloride channel 3
mm9_v1_chr8_-_97220127_97220176	6.20413	CAGCAGG	AK018198|Pllp|67801|plasma membrane proteolipid	AK032540|Pllp|67801|plasma membrane proteolipid	BC024534|Pllp|67801|plasma membrane proteolipid	AK002477|Pllp|67801|plasma membrane proteolipid	NM_026385|Pllp|67801|plasma membrane proteolipid
mm9_v1_chr18_+_65047408_65047414	6.14078	CAGCAGG	NM_001114386|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr1_-_172519932_172519981	6.10118	CAGCAGG	AK045124|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	AK018149|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	AK053892|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	NM_001109985|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein
mm9_v1_chr4_-_76240202_76240202	6.04045	CAGCAGG	BC086654|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	NM_011211|Ptprd|19266|protein tyrosine phosphatase, receptor type, D
mm9_v1_chr11_-_36757743_36757744	6.02239	CAGCAGG	BC141361|Odz2|23964|odd Oz/ten-m homolog 2 (Drosophila)	NM_011856|Odz2|23964|odd Oz/ten-m homolog 2 (Drosophila)
mm9_v1_chr7_+_133960398_133960398	6.01589	CAGCAGG	NM_026884|Fam57b|68952|family with sequence similarity 57, member B
mm9_v1_chr12_-_14158843_14158897	5.96971	CAGCAGG	BC005488|Fam84a|105005|family with sequence similarity 84, member A	NM_029007|Fam84a|105005|family with sequence similarity 84, member A	AK014625|Fam84a|105005|family with sequence similarity 84, member A
mm9_v1_chr18_+_67247984_67247998	5.95069	CAGCAGG	AK045484|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type	BC078439|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type	NM_177137|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type
mm9_v1_chr5_+_89316245_89316323	5.89496	CAGCAGG	NM_001136260|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	NM_001197147|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	NM_018760|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	HQ204220|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	AF020195|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	BC129863|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	BC148292|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	BC129864|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4
mm9_v1_chr6_+_54402876_54402876	5.85783	CAGCAGG	NM_001167860|Wipf3|330319|WAS/WASL interacting protein family, member 3	NM_001167861|Wipf3|330319|WAS/WASL interacting protein family, member 3
mm9_v1_chr14_-_125076242_125076348	5.85646	CAGCAGG	BC107003|Fgf14|14169|fibroblast growth factor 14	BC107004|Fgf14|14169|fibroblast growth factor 14	AK079100|Fgf14|14169|fibroblast growth factor 14	NM_207667|Fgf14|14169|fibroblast growth factor 14
mm9_v1_chr5_-_33196860_33196908	5.78263	CAGCAGG	AK134346|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene	NM_194340|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene
mm9_v1_chr6_+_86028044_86028077	5.61615	CAGCAGG	AK156954|Add2|11519|adducin 2 (beta)	AK028425|Add2|11519|adducin 2 (beta)	AK014496|Add2|11519|adducin 2 (beta)	NM_013458|Add2|11519|adducin 2 (beta)
mm9_v1_chr7_-_148620437_148620500	5.58904	CAGCAGG	AK162400|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	BC037949|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	AK155276|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	NM_001177576|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm9_v1_chr14_-_122196929_122196955	5.57865	CAGCAGG	NM_134074|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr13_-_100286521_100286556	5.56329	CAGCAGG	NM_008634|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr6_+_124948454_124948454	5.54246	CAGCAGG	BC065170|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_001145927|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr11_+_100870759_100870810	5.5251	CAGCAGG	NM_016920|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK029316|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AF218249|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK036530|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK158786|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC066839|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC071182|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC001995|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1
mm9_v1_chr2_-_35056582_35056639	5.48158	CAGCAGG	AK160859|Rab14|68365|RAB14, member RAS oncogene family	NM_026697|Rab14|68365|RAB14, member RAS oncogene family
mm9_v1_chr14_-_124591742_124591767	5.4739	CAGCAGG	U66204|Fgf14|14169|fibroblast growth factor 14	NM_010201|Fgf14|14169|fibroblast growth factor 14
mm9_v1_chr9_+_66561492_66561635	5.46142	CAGCAGG	NM_178396|Car12|76459|carbonic anyhydrase 12	AK052639|Car12|76459|carbonic anyhydrase 12	AK157977|Car12|76459|carbonic anyhydrase 12	AK037694|Car12|76459|carbonic anyhydrase 12	AK166132|Car12|76459|carbonic anyhydrase 12	BC031385|Car12|76459|carbonic anyhydrase 12	BC035941|Car12|76459|carbonic anyhydrase 12	AK170859|Car12|76459|carbonic anyhydrase 12	BC033432|Car12|76459|carbonic anyhydrase 12
mm9_v1_chr6_+_124948627_124948627	5.4514	CAGCAGG	AK148352|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_001145926|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr18_+_61123204_61123218	5.44405	CAGCAGG	NM_009792|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	X87142|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chrX_+_143397055_143397188	5.44127	CAGCAGG	AK034512|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK043320|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK079648|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK139392|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	NM_008312|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK086348|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	BC098327|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	M63685|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	X72230|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C
mm9_v1_chr16_+_43247396_43247452	5.42234	CAGCAGG	AK005028|Zbtb20|56490|zinc finger and BTB domain containing 20	NM_019778|Zbtb20|56490|zinc finger and BTB domain containing 20	NM_181058|Zbtb20|56490|zinc finger and BTB domain containing 20	BC031114|Zbtb20|56490|zinc finger and BTB domain containing 20
mm9_v1_chr11_+_68912444_68912492	5.40342	CAGCAGG	NM_011065|Per1|18626|period homolog 1 (Drosophila)	BC091645|Per1|18626|period homolog 1 (Drosophila)
mm9_v1_chr2_+_156246644_156246847	5.36377	CAGCAGG	AK147611|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK147272|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK165479|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_001003815|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_013510|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK044744|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK154704|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AF061283|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	BC034751|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr2_+_102498839_102498845	5.36268	CAGCAGG	AK134609|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077514|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AK140095|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr1_+_89160921_89160953	5.34871	CAGCAGG	AK045911|Efhd1|98363|EF hand domain containing 1	AK171846|Efhd1|98363|EF hand domain containing 1	AK016491|Efhd1|98363|EF hand domain containing 1	NM_028889|Efhd1|98363|EF hand domain containing 1	AK144175|Efhd1|98363|EF hand domain containing 1	BC019531|Efhd1|98363|EF hand domain containing 1	BC085088|Efhd1|98363|EF hand domain containing 1
mm9_v1_chr10_+_20760625_20760625	5.33049	CAGCAGG	AK161335|Ahi1|52906|Abelson helper integration site 1	NM_001177776|Ahi1|52906|Abelson helper integration site 1
mm9_v1_chr3_+_95985065_95985205	5.21592	CAGCAGG	AK080525|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK144166|Sv2a|64051|synaptic vesicle glycoprotein 2 a	BC046587|Sv2a|64051|synaptic vesicle glycoprotein 2 a	NM_022030|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK080502|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK028318|Sv2a|64051|synaptic vesicle glycoprotein 2 a
mm9_v1_chr19_-_5085471_5085483	5.12442	CAGCAGG	BC072634|Tmem151a|381199|transmembrane protein 151A	NM_001001885|Tmem151a|381199|transmembrane protein 151A
mm9_v1_chr6_-_112897259_112897274	5.11983	CAGCAGG	AK045508|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	AK051262|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	NM_080448|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3
mm9_v1_chr11_+_89891661_89891661	5.11542	CAGCAGG	AK007878|Tmem100|67888|transmembrane protein 100	NM_026433|Tmem100|67888|transmembrane protein 100
mm9_v1_chr7_+_116154373_116154494	5.10743	CAGCAGG	AK165720|Tub|22141|tubby candidate gene	NM_021885|Tub|22141|tubby candidate gene	U52433|Tub|22141|tubby candidate gene	BC096554|Tub|22141|tubby candidate gene	U54643|Tub|22141|tubby candidate gene
mm9_v1_chr17_+_87153083_87153241	5.10732	CAGCAGG	AK136911|Epas1|13819|endothelial PAS domain protein 1	NM_010137|Epas1|13819|endothelial PAS domain protein 1	D89787|Epas1|13819|endothelial PAS domain protein 1
mm9_v1_chr9_+_21742717_21742717	5.08805	CAGCAGG	AY438023|BC018242|235044|cDNA sequence BC018242	BC018242|BC018242|235044|cDNA sequence BC018242	NM_144935|BC018242|235044|cDNA sequence BC018242
mm9_v1_chr19_+_43514902_43514932	5.05635	CAGCAGG	NM_031396|Cnnm1|83674|cyclin M1
mm9_v1_chr13_+_58907953_58907974	5.02714	CAGCAGG	NM_008745|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr19_-_10315199_10315247	5.02203	CAGCAGG	BC157942|Gm98|225908|predicted gene 98	AK031485|Gm98|225908|predicted gene 98	AK141695|Gm98|225908|predicted gene 98	NM_001033481|Gm98|225908|predicted gene 98
mm9_v1_chr7_+_98239230_98239295	4.99407	CAGCAGG	NM_011807|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr19_-_46401618_46401645	4.96476	CAGCAGG	BC057353|Psd|73728|pleckstrin and Sec7 domain containing	NM_028627|Psd|73728|pleckstrin and Sec7 domain containing
mm9_v1_chr11_+_77590766_77590794	4.96348	CAGCAGG	AB026497|Myo18a|360013|myosin XVIIIA	NM_011586|Myo18a|360013|myosin XVIIIA	BC138366|Myo18a|360013|myosin XVIIIA	BC145257|Myo18a|360013|myosin XVIIIA
mm9_v1_chr1_+_89652645_89652774	4.9561	CAGCAGG	AK030983|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	NM_029846|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK145673|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK155358|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK163246|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK170073|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	BC049122|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK048873|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK005181|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087879|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087880|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087881|Atg16l1|77040|autophagy-related 16-like 1 (yeast)
mm9_v1_chr2_-_154384574_154384627	4.93904	CAGCAGG	AK044296|Necab3|56846|N-terminal EF-hand calcium binding protein 3	AK013520|Necab3|56846|N-terminal EF-hand calcium binding protein 3	AK158225|Necab3|56846|N-terminal EF-hand calcium binding protein 3	NM_021546|Necab3|56846|N-terminal EF-hand calcium binding protein 3
mm9_v1_chr14_-_31736727_31736772	4.93687	CAGCAGG	X70393|Itih3|16426|inter-alpha trypsin inhibitor, heavy chain 3	BC015276|Itih3|16426|inter-alpha trypsin inhibitor, heavy chain 3	AK146700|Itih3|16426|inter-alpha trypsin inhibitor, heavy chain 3	NM_008407|Itih3|16426|inter-alpha trypsin inhibitor, heavy chain 3
mm9_v1_chr4_-_75779379_75779379	4.93608	CAGCAGG	AF326559|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	AF326560|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	NM_001014288|Ptprd|19266|protein tyrosine phosphatase, receptor type, D
mm9_v1_chr8_+_97296066_97296079	4.92724	CAGCAGG	NM_009142|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1
mm9_v1_chr14_-_88871202_88871202	4.91384	CAGCAGG	AK083114|Pcdh20|219257|protocadherin 20	NM_178685|Pcdh20|219257|protocadherin 20
mm9_v1_chr4_+_84851330_84851416	4.87288	CAGCAGG	AK044370|Sh3gl2|20404|SH3-domain GRB2-like 2	BC018385|Sh3gl2|20404|SH3-domain GRB2-like 2	NM_019535|Sh3gl2|20404|SH3-domain GRB2-like 2	AK043424|Sh3gl2|20404|SH3-domain GRB2-like 2	AK139337|Sh3gl2|20404|SH3-domain GRB2-like 2	U58886|Sh3gl2|20404|SH3-domain GRB2-like 2
mm9_v1_chr14_-_122097583_122097657	4.85056	CAGCAGG	BC157964|Dock9|105445|dedicator of cytokinesis 9	NM_001081039|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr5_-_118694869_118695124	4.80756	CAGCAGG	AK046850|Rnft2|269695|ring finger protein, transmembrane 2	NM_172998|Rnft2|269695|ring finger protein, transmembrane 2	BC057302|Rnft2|269695|ring finger protein, transmembrane 2	AK148930|Rnft2|269695|ring finger protein, transmembrane 2	NM_001109902|Rnft2|269695|ring finger protein, transmembrane 2	AK090256|Rnft2|269695|ring finger protein, transmembrane 2
mm9_v1_chr4_-_151851574_151851597	4.80131	CAGCAGG	BC039178|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	NM_010598|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	U31908|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm9_v1_chr16_-_46010510_46010548	4.78064	CAGCAGG	NM_001134480|Plcxd2|433022|phosphatidylinositol-specific phospholipase C, X domain containing 2
mm9_v1_chr18_-_67708826_67708826	4.74711	CAGCAGG	BC058320|Spire1|68166|spire homolog 1 (Drosophila)	NM_176832|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chr11_+_49715292_49715377	4.69213	CAGCAGG	AK047088|Rasgef1c|74563|RasGEF domain family, member 1C	NM_029004|Rasgef1c|74563|RasGEF domain family, member 1C	AK018593|Rasgef1c|74563|RasGEF domain family, member 1C
mm9_v1_chr17_-_24781872_24781901	4.66989	CAGCAGG	BC065778|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK002557|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	NM_023449|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm9_v1_chr16_-_34514112_34514198	4.63475	CAGCAGG	BC157950|Kalrn|545156|kalirin, RhoGEF kinase	BC172101|Kalrn|545156|kalirin, RhoGEF kinase	NM_001164268|Kalrn|545156|kalirin, RhoGEF kinase	NM_177357|Kalrn|545156|kalirin, RhoGEF kinase	AK147314|Kalrn|545156|kalirin, RhoGEF kinase	AK147518|Kalrn|545156|kalirin, RhoGEF kinase
mm9_v1_chr3_+_105507516_105507594	4.6324	CAGCAGG	NM_175398|6530418L21Rik|109050|RIKEN cDNA 6530418L21 gene	AK033558|6530418L21Rik|109050|RIKEN cDNA 6530418L21 gene	BC052371|6530418L21Rik|109050|RIKEN cDNA 6530418L21 gene
mm9_v1_chr12_+_89961317_89961336	4.61594	CAGCAGG	AK078216|Nrxn3|18191|neurexin III	AK082055|Nrxn3|18191|neurexin III	NM_001198587|Nrxn3|18191|neurexin III	AK149250|Nrxn3|18191|neurexin III
mm9_v1_chr5_-_139801315_139801476	4.61191	CAGCAGG	NM_172723|Adap1|231821|ArfGAP with dual PH domains 1
mm9_v1_chr12_-_103943059_103943209	4.60522	CAGCAGG	BC056464|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	AK038913|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	NM_172584|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase
mm9_v1_chr19_+_27291507_27291624	4.5969	CAGCAGG	AK044683|Vldlr|22359|very low density lipoprotein receptor	AK076172|Vldlr|22359|very low density lipoprotein receptor	NM_001161420|Vldlr|22359|very low density lipoprotein receptor	NM_013703|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr9_-_45714959_45715007	4.59618	CAGCAGG	AK051527|Rnf214|235315|ring finger protein 214	NM_178709|Rnf214|235315|ring finger protein 214	AK046997|Rnf214|235315|ring finger protein 214	AK030208|Rnf214|235315|ring finger protein 214
mm9_v1_chr18_-_62071451_62071482	4.56238	CAGCAGG	BC094229|Ablim3|319713|actin binding LIM protein family, member 3	AK082380|Ablim3|319713|actin binding LIM protein family, member 3	BC060275|Ablim3|319713|actin binding LIM protein family, member 3	NM_198649|Ablim3|319713|actin binding LIM protein family, member 3
mm9_v1_chr9_-_77392505_77392711	4.52829	CAGCAGG	BC087542|Lrrc1|214345|leucine rich repeat containing 1	AK079854|Lrrc1|214345|leucine rich repeat containing 1	BC046591|Lrrc1|214345|leucine rich repeat containing 1	AK051043|Lrrc1|214345|leucine rich repeat containing 1	AK147075|Lrrc1|214345|leucine rich repeat containing 1	NM_001146048|Lrrc1|214345|leucine rich repeat containing 1	AK220166|Lrrc1|214345|leucine rich repeat containing 1
mm9_v1_chr9_+_64233432_64233531	4.5047	CAGCAGG	NM_001134399|Megf11|214058|multiple EGF-like-domains 11	NM_172522|Megf11|214058|multiple EGF-like-domains 11	AK048840|Megf11|214058|multiple EGF-like-domains 11	AK122555|Megf11|214058|multiple EGF-like-domains 11	AK051642|Megf11|214058|multiple EGF-like-domains 11	BC151157|Megf11|214058|multiple EGF-like-domains 11	BC172024|Megf11|214058|multiple EGF-like-domains 11
mm9_v1_chr1_+_66515003_66515020	4.48204	CAGCAGG	AK043914|Unc80|329178|unc-80 homolog (C. elegans)	FJ210934|Unc80|329178|unc-80 homolog (C. elegans)	NM_175510|Unc80|329178|unc-80 homolog (C. elegans)
mm9_v1_chr1_+_75139300_75139429	4.43421	CAGCAGG	AK034667|Fam134a|227298|family with sequence similarity 134, member A	NM_170755|Fam134a|227298|family with sequence similarity 134, member A	AK172093|Fam134a|227298|family with sequence similarity 134, member A	BC070406|Fam134a|227298|family with sequence similarity 134, member A	AK165957|Fam134a|227298|family with sequence similarity 134, member A	AK160400|Fam134a|227298|family with sequence similarity 134, member A
mm9_v1_chr5_+_9266137_9266216	4.40344	CAGCAGG	AK079644|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK165601|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK081041|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK034358|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK045969|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK048738|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK133610|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	NM_172706|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	BC132290|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	BC138012|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene
mm9_v1_chr15_+_99532698_99532771	4.35737	CAGCAGG	NM_031842|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC059921|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	M25773|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	U66620|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC079839|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr10_+_20672352_20672469	4.3476	CAGCAGG	AK080373|Ahi1|52906|Abelson helper integration site 1	NM_026203|Ahi1|52906|Abelson helper integration site 1	AK005991|Ahi1|52906|Abelson helper integration site 1	AK013997|Ahi1|52906|Abelson helper integration site 1	AK019416|Ahi1|52906|Abelson helper integration site 1	BC106130|Ahi1|52906|Abelson helper integration site 1	BC065146|Ahi1|52906|Abelson helper integration site 1	AK036336|Ahi1|52906|Abelson helper integration site 1	AY133241|Ahi1|52906|Abelson helper integration site 1
mm9_v1_chr2_+_158201373_158201515	4.30432	CAGCAGG	NM_175692|Snhg11|319317|small nucleolar RNA host gene 11	AK157790|Snhg11|319317|small nucleolar RNA host gene 11	AK080745|Snhg11|319317|small nucleolar RNA host gene 11	AK133939|Snhg11|319317|small nucleolar RNA host gene 11	AK138473|Snhg11|319317|small nucleolar RNA host gene 11	BC049241|Snhg11|319317|small nucleolar RNA host gene 11	BC030414|Snhg11|319317|small nucleolar RNA host gene 11
mm9_v1_chr6_-_85452851_85452987	4.29409	CAGCAGG	AK147681|Fbxo41|330369|F-box protein 41	AK147230|Fbxo41|330369|F-box protein 41	NM_001001160|Fbxo41|330369|F-box protein 41	BC070445|Fbxo41|330369|F-box protein 41
mm9_v1_chr2_-_92241357_92241532	4.28391	CAGCAGG	AF003115|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF054611|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	NM_011162|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chr19_+_10463540_10463619	4.27972	CAGCAGG	NM_018801|Syt7|54525|synaptotagmin VII	NM_173067|Syt7|54525|synaptotagmin VII	NM_173068|Syt7|54525|synaptotagmin VII	AK080850|Syt7|54525|synaptotagmin VII
mm9_v1_chr3_-_108218411_108218411	4.26252	CAGCAGG	AB028499|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	NM_001004177|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	NM_017392|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)
mm9_v1_chrX_+_58962671_58962790	4.24852	CAGCAGG	AK137057|Ldoc1|434784|leucine zipper, down-regulated in cancer 1	BC052689|Ldoc1|434784|leucine zipper, down-regulated in cancer 1	NM_001018087|Ldoc1|434784|leucine zipper, down-regulated in cancer 1
mm9_v1_chr8_-_113917651_113917728	4.2303	CAGCAGG	AY660882|Fa2h|338521|fatty acid 2-hydroxylase	BC046985|Fa2h|338521|fatty acid 2-hydroxylase	BC111912|Fa2h|338521|fatty acid 2-hydroxylase	BC128080|Fa2h|338521|fatty acid 2-hydroxylase	BC128081|Fa2h|338521|fatty acid 2-hydroxylase	AK090338|Fa2h|338521|fatty acid 2-hydroxylase	AK033736|Fa2h|338521|fatty acid 2-hydroxylase	AK161502|Fa2h|338521|fatty acid 2-hydroxylase	NM_178086|Fa2h|338521|fatty acid 2-hydroxylase
mm9_v1_chr1_+_87791084_87791223	4.216	CAGCAGG	NM_022417|Itm2c|64294|integral membrane protein 2C	AB030199|Itm2c|64294|integral membrane protein 2C	AK036377|Itm2c|64294|integral membrane protein 2C	AF282981|Itm2c|64294|integral membrane protein 2C	AF272044|Itm2c|64294|integral membrane protein 2C	AK156930|Itm2c|64294|integral membrane protein 2C	BC012952|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr2_+_181449669_181449860	4.21527	CAGCAGG	AF043276|Oprl1|18389|opioid receptor-like 1	U09421|Oprl1|18389|opioid receptor-like 1	AK031926|Oprl1|18389|opioid receptor-like 1	AK079529|Oprl1|18389|opioid receptor-like 1	NM_011012|Oprl1|18389|opioid receptor-like 1	AK043275|Oprl1|18389|opioid receptor-like 1	AK044178|Oprl1|18389|opioid receptor-like 1	X91813|Oprl1|18389|opioid receptor-like 1	AK142474|Oprl1|18389|opioid receptor-like 1	BC050885|Oprl1|18389|opioid receptor-like 1	U04952|Oprl1|18389|opioid receptor-like 1	BC051982|Oprl1|18389|opioid receptor-like 1
mm9_v1_chr3_+_105255247_105255337	4.19605	CAGCAGG	NM_001039347|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AK147574|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr9_-_16182674_16182674	4.1878	CAGCAGG	NM_001080814|Fat3|270120|FAT tumor suppressor homolog 3 (Drosophila)
mm9_v1_chr8_+_77737842_77737842	4.1749	CAGCAGG	BC036988|Rasd2|75141|RASD family, member 2	NM_029182|Rasd2|75141|RASD family, member 2
mm9_v1_chr18_-_67712374_67712430	4.17475	CAGCAGG	BC058669|Spire1|68166|spire homolog 1 (Drosophila)	NM_194355|Spire1|68166|spire homolog 1 (Drosophila)	BC094375|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chr18_-_62071494_62071513	4.15042	CAGCAGG	NM_001164491|Ablim3|319713|actin binding LIM protein family, member 3
mm9_v1_chrX_-_7151185_7151245	4.13452	CAGCAGG	BC138137|Ppp1r3f|54646|protein phosphatase 1, regulatory (inhibitor) subunit 3F	BC138138|Ppp1r3f|54646|protein phosphatase 1, regulatory (inhibitor) subunit 3F	AF229644|Ppp1r3f|54646|protein phosphatase 1, regulatory (inhibitor) subunit 3F	NM_138605|Ppp1r3f|54646|protein phosphatase 1, regulatory (inhibitor) subunit 3F
mm9_v1_chr1_+_60466462_60466491	4.11931	CAGCAGG	NM_001198570|Abi2|329165|abl-interactor 2	NM_001198571|Abi2|329165|abl-interactor 2	NM_198127|Abi2|329165|abl-interactor 2
mm9_v1_chr2_-_91803660_91803893	4.10435	CAGCAGG	NM_138306|Dgkz|104418|diacylglycerol kinase zeta	BC049228|Dgkz|104418|diacylglycerol kinase zeta
mm9_v1_chr4_-_148681792_148681843	4.10392	CAGCAGG	AK036129|Kif1b|16561|kinesin family member 1B	NM_008441|Kif1b|16561|kinesin family member 1B	NM_207682|Kif1b|16561|kinesin family member 1B	AK134946|Kif1b|16561|kinesin family member 1B
mm9_v1_chr3_-_31209216_31209240	4.07829	CAGCAGG	AK173217|Slc7a14|241919|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	BC061928|Slc7a14|241919|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	AK044448|Slc7a14|241919|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	NM_172861|Slc7a14|241919|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14
mm9_v1_chrX_+_148613496_148613589	4.07426	CAGCAGG	AK155453|Iqsec2|245666|IQ motif and Sec7 domain 2	NM_001005475|Iqsec2|245666|IQ motif and Sec7 domain 2
mm9_v1_chr11_-_33893151_33893192	4.06366	CAGCAGG	AK048178|Kcnip1|70357|Kv channel-interacting protein 1	AK081845|Kcnip1|70357|Kv channel-interacting protein 1	DQ148494|Kcnip1|70357|Kv channel-interacting protein 1	NM_001190886|Kcnip1|70357|Kv channel-interacting protein 1
mm9_v1_chr2_+_156301543_156301577	4.00744	CAGCAGG	NM_001006664|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr8_-_97400173_97400261	3.98621	CAGCAGG	BC004705|Dok4|114255|docking protein 4	AK032352|Dok4|114255|docking protein 4	AK077612|Dok4|114255|docking protein 4	AK156485|Dok4|114255|docking protein 4	NM_053246|Dok4|114255|docking protein 4
mm9_v1_chr7_-_88049882_88049956	3.93148	CAGCAGG	BC028490|Nmb|68039|neuromedin B	AK011929|Nmb|68039|neuromedin B	AK014077|Nmb|68039|neuromedin B	NM_026523|Nmb|68039|neuromedin B
mm9_v1_chr14_-_122138082_122138150	3.91885	CAGCAGG	BC158050|Dock9|105445|dedicator of cytokinesis 9	AK122431|Dock9|105445|dedicator of cytokinesis 9	NM_001128307|Dock9|105445|dedicator of cytokinesis 9	NM_001128308|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr11_-_72303293_72303434	3.91295	CAGCAGG	AB441166|Spns2|216892|spinster homolog 2 (Drosophila)	NM_153060|Spns2|216892|spinster homolog 2 (Drosophila)	BC011467|Spns2|216892|spinster homolog 2 (Drosophila)
mm9_v1_chr19_-_14672472_14672537	3.87891	CAGCAGG	AK017548|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)	NM_011600|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chr2_-_91790504_91790533	3.87025	CAGCAGG	AK087503|Dgkz|104418|diacylglycerol kinase zeta	NM_001166597|Dgkz|104418|diacylglycerol kinase zeta
mm9_v1_chr4_-_132895228_132895231	3.86657	CAGCAGG	AK172431|Wdtc1|230796|WD and tetratricopeptide repeats 1	NM_199306|Wdtc1|230796|WD and tetratricopeptide repeats 1
mm9_v1_chr19_-_60937266_60937332	3.85064	CAGCAGG	AF325263|Sfxn4|94281|sideroflexin 4	BC089535|Sfxn4|94281|sideroflexin 4	AK148530|Sfxn4|94281|sideroflexin 4	BC058211|Sfxn4|94281|sideroflexin 4	NM_053198|Sfxn4|94281|sideroflexin 4
mm9_v1_chr15_+_99548019_99548062	3.82459	CAGCAGG	AK004565|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	BC019391|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	NM_010271|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	AK220445|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	J02655|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	BC005756|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)
mm9_v1_chr18_+_37120093_37120209	3.81314	CAGCAGG	AY013763|Pcdha5|12941|protocadherin alpha 5	NM_009959|Pcdha5|12941|protocadherin alpha 5	AB008181|Pcdha5|12941|protocadherin alpha 5
mm9_v1_chr18_+_37127284_37127409	3.7898	CAGCAGG	D86917|Pcdha6|12937|protocadherin alpha 6	BC150815|Pcdha6|12937|protocadherin alpha 6	BC150816|Pcdha6|12937|protocadherin alpha 6	BC054813|Pcdha6|12937|protocadherin alpha 6	AY013764|Pcdha6|12937|protocadherin alpha 6	NM_007767|Pcdha6|12937|protocadherin alpha 6
mm9_v1_chr12_-_88607158_88607275	3.73502	CAGCAGG	BC016646|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	AK082261|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	AK049643|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	AK079055|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	AK038165|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	AK046322|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	AK145043|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	NM_001142580|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	NM_001142581|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	AK020129|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator
mm9_v1_chr19_-_42506122_42506286	3.70712	CAGCAGG	AJ421516|Crtac1|72832|cartilage acidic protein 1	AK032328|Crtac1|72832|cartilage acidic protein 1	AK049801|Crtac1|72832|cartilage acidic protein 1	AK149069|Crtac1|72832|cartilage acidic protein 1	NM_145123|Crtac1|72832|cartilage acidic protein 1	AK083221|Crtac1|72832|cartilage acidic protein 1	AK149020|Crtac1|72832|cartilage acidic protein 1
mm9_v1_chr19_-_5118229_5118407	3.67157	CAGCAGG	AF055666|Klc2|16594|kinesin light chain 2	BC014845|Klc2|16594|kinesin light chain 2	AK141439|Klc2|16594|kinesin light chain 2	NM_008451|Klc2|16594|kinesin light chain 2
mm9_v1_chr19_-_4175478_4175577	3.67134	CAGCAGG	NM_134148|Carns1|107239|carnosine synthase 1
mm9_v1_chr11_+_75345164_75345232	3.63743	CAGCAGG	AB120363|Slc43a2|215113|solute carrier family 43, member 2	BC042513|Slc43a2|215113|solute carrier family 43, member 2	NM_173388|Slc43a2|215113|solute carrier family 43, member 2
mm9_v1_chr6_-_92517359_92517359	3.63187	CAGCAGG	BC050793|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134461|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr18_+_37098858_37098971	3.62537	CAGCAGG	BC030897|Pcdha2|353234|protocadherin alpha 2	NM_198117|Pcdha2|353234|protocadherin alpha 2	BC141390|Pcdha2|353234|protocadherin alpha 2	AY013760|Pcdha2|353234|protocadherin alpha 2
mm9_v1_chr6_-_57485419_57485488	3.5947	CAGCAGG	BC092238|Ppm1k|243382|protein phosphatase 1K (PP2C domain containing)	NM_175523|Ppm1k|243382|protein phosphatase 1K (PP2C domain containing)	AK044610|Ppm1k|243382|protein phosphatase 1K (PP2C domain containing)
mm9_v1_chr2_-_25174662_25174740	3.5869	CAGCAGG	AK090286|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_001177656|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_001177657|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_008169|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)
mm9_v1_chr2_-_130468507_130468540	3.58127	CAGCAGG	AK161711|Prosapip1|241638|ProSAPiP1 protein	AK148251|Prosapip1|241638|ProSAPiP1 protein	NM_197945|Prosapip1|241638|ProSAPiP1 protein
mm9_v1_chr17_-_24336901_24336901	3.57423	CAGCAGG	AK049306|Tbc1d24|224617|TBC1 domain family, member 24	AK161054|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163852|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163853|Tbc1d24|224617|TBC1 domain family, member 24
mm9_v1_chr5_-_108978950_108979047	3.56842	CAGCAGG	BC014803|Cplx1|12889|complexin 1	D38614|Cplx1|12889|complexin 1	AK158166|Cplx1|12889|complexin 1	AK134820|Cplx1|12889|complexin 1	AK159026|Cplx1|12889|complexin 1	NM_007756|Cplx1|12889|complexin 1
mm9_v1_chr18_+_37179802_37179999	3.54964	CAGCAGG	AY013759|Pcdha12|192164|protocadherin alpha 12	NM_138663|Pcdha12|192164|protocadherin alpha 12	AB008180|Pcdha12|192164|protocadherin alpha 12
mm9_v1_chr2_-_127347102_127347108	3.54236	CAGCAGG	AF287732|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF287733|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	NM_019789|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr5_+_144861227_144861325	3.53909	CAGCAGG	AK158724|Lmtk2|231876|lemur tyrosine kinase 2	NM_001081109|Lmtk2|231876|lemur tyrosine kinase 2
mm9_v1_chr2_-_118529608_118529698	3.52795	CAGCAGG	NM_001081971|Gm1337|383787|predicted gene 1337
mm9_v1_chr9_+_106356125_106356294	3.52557	CAGCAGG	NM_021567|Pcbp4|59092|poly(rC) binding protein 4	AK004580|Pcbp4|59092|poly(rC) binding protein 4	AK005383|Pcbp4|59092|poly(rC) binding protein 4	AK077632|Pcbp4|59092|poly(rC) binding protein 4	AK082005|Pcbp4|59092|poly(rC) binding protein 4	BC010694|Pcbp4|59092|poly(rC) binding protein 4	AF176328|Pcbp4|59092|poly(rC) binding protein 4
mm9_v1_chr16_-_4789869_4789937	3.50637	CAGCAGG	AK017480|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK005157|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	BC004063|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK149939|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK150219|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK051560|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK031705|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	NM_025670|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene
mm9_v1_chr7_+_127821093_127821157	3.498	CAGCAGG	NM_001164580|BC030336|233812|cDNA sequence BC030336
mm9_v1_chrX_-_7709907_7709983	3.48162	CAGCAGG	BC080853|Wdr13|73447|WD repeat domain 13	BC057366|Wdr13|73447|WD repeat domain 13	NM_026137|Wdr13|73447|WD repeat domain 13
mm9_v1_chr11_+_75007475_75007498	3.47312	CAGCAGG	AK140456|Rtn4rl1|237847|reticulon 4 receptor-like 1	NM_177708|Rtn4rl1|237847|reticulon 4 receptor-like 1	AK033286|Rtn4rl1|237847|reticulon 4 receptor-like 1
mm9_v1_chr6_+_124946723_124946772	3.46672	CAGCAGG	AK082984|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_175696|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr11_-_75609557_75609567	3.45726	CAGCAGG	BC067030|Doc2b|13447|double C2, beta	NM_007873|Doc2b|13447|double C2, beta
mm9_v1_chr1_+_196446006_196446022	3.45177	CAGCAGG	NM_008882|Plxna2|18845|plexin A2
mm9_v1_chr18_+_37089837_37089938	3.44041	CAGCAGG	BC082326|Pcdha1|116731|protocadherin alpha 1	AY013756|Pcdha1|116731|protocadherin alpha 1	NM_054072|Pcdha1|116731|protocadherin alpha 1
mm9_v1_chr19_-_4283126_4283138	3.43791	CAGCAGG	AK089186|Ankrd13d|68423|ankyrin repeat domain 13 family, member D	AK155698|Ankrd13d|68423|ankyrin repeat domain 13 family, member D	NM_026720|Ankrd13d|68423|ankyrin repeat domain 13 family, member D
mm9_v1_chr2_-_127308234_127308234	3.4349	CAGCAGG	DQ148500|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	NM_001111331|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr7_-_126622690_126622768	3.433	CAGCAGG	AK144065|Umod|22242|uromodulin	AK164688|Umod|22242|uromodulin	L33406|Umod|22242|uromodulin	AK165507|Umod|22242|uromodulin	AK085460|Umod|22242|uromodulin	NM_009470|Umod|22242|uromodulin
mm9_v1_chr4_+_122860705_122860828	3.42688	CAGCAGG	AK032591|Hpcal4|170638|hippocalcin-like 4	NM_174998|Hpcal4|170638|hippocalcin-like 4
mm9_v1_chr11_+_67399999_67400271	3.41818	CAGCAGG	AK031455|Gas7|14457|growth arrest specific 7	NM_001109657|Gas7|14457|growth arrest specific 7	AK154463|Gas7|14457|growth arrest specific 7	AK017394|Gas7|14457|growth arrest specific 7
mm9_v1_chr18_+_37157533_37157533	3.37578	CAGCAGG	AY013767|Pcdha9|192161|protocadherin alpha 9	NM_138661|Pcdha9|192161|protocadherin alpha 9
mm9_v1_chr5_+_143178045_143178121	3.36998	CAGCAGG	NM_146257|Slc29a4|243328|solute carrier family 29 (nucleoside transporters), member 4	BC025599|Slc29a4|243328|solute carrier family 29 (nucleoside transporters), member 4
mm9_v1_chr6_-_92656148_92656177	3.3604	CAGCAGG	BC099897|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001081146|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr18_-_32109233_32109289	3.35952	CAGCAGG	BC070439|Gpr17|574402|G protein-coupled receptor 17	NM_001025381|Gpr17|574402|G protein-coupled receptor 17
mm9_v1_chr15_-_31460752_31460820	3.35772	CAGCAGG	AK132461|March6|223455|membrane-associated ring finger (C3HC4) 6	AK089827|March6|223455|membrane-associated ring finger (C3HC4) 6	NM_172606|March6|223455|membrane-associated ring finger (C3HC4) 6
mm9_v1_chr12_-_81537525_81537603	3.35667	CAGCAGG	BC046813|Dcaf5|320808|DDB1 and CUL4 associated factor 5	AK165096|Dcaf5|320808|DDB1 and CUL4 associated factor 5	AK137579|Dcaf5|320808|DDB1 and CUL4 associated factor 5	NM_177267|Dcaf5|320808|DDB1 and CUL4 associated factor 5
mm9_v1_chr1_+_37356722_37356738	3.33831	CAGCAGG	AK162581|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	NM_030266|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I
mm9_v1_chr10_-_83903215_83903291	3.30971	CAGCAGG	BC082328|Nuak1|77976|NUAK family, SNF1-like kinase, 1	NM_001004363|Nuak1|77976|NUAK family, SNF1-like kinase, 1
mm9_v1_chr11_+_55017825_55017912	3.293	CAGCAGG	NM_153139|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	AY211262|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	BC138556|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	BC138558|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1
mm9_v1_chr2_+_38863553_38863815	3.28085	CAGCAGG	BC024482|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	AK008255|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	NM_028809|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	AK181564|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like
mm9_v1_chr2_+_177910053_177910084	3.26979	CAGCAGG	AJ632221|Phactr3|74189|phosphatase and actin regulator 3	NM_001177791|Phactr3|74189|phosphatase and actin regulator 3	AK005136|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr2_+_177927788_177927833	3.24279	CAGCAGG	AJ632222|Phactr3|74189|phosphatase and actin regulator 3	NM_001007154|Phactr3|74189|phosphatase and actin regulator 3	AK038449|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr15_+_89284341_89284359	3.23012	CAGCAGG	NM_021921|Mapk8ip2|60597|mitogen-activated protein kinase 8 interacting protein 2
mm9_v1_chr2_+_32006651_32006708	3.22228	CAGCAGG	AK147271|Prrc2b|227723|proline-rich coiled-coil 2B	AK147677|Prrc2b|227723|proline-rich coiled-coil 2B	NM_001159634|Prrc2b|227723|proline-rich coiled-coil 2B	NM_172661|Prrc2b|227723|proline-rich coiled-coil 2B	BC055116|Prrc2b|227723|proline-rich coiled-coil 2B
mm9_v1_chr2_-_37502738_37502804	3.21846	CAGCAGG	X84692|Strbp|20744|spermatid perinuclear RNA binding protein	NM_009261|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr12_+_33832550_33832590	3.21672	CAGCAGG	NM_028139|Atxn7l1|380753|ataxin 7-like 1
mm9_v1_chr14_-_9142289_9142295	3.21211	CAGCAGG	BC055107|Fam107a|268709|family with sequence similarity 107, member A	NM_183187|Fam107a|268709|family with sequence similarity 107, member A	AK165722|Fam107a|268709|family with sequence similarity 107, member A
mm9_v1_chr2_+_177853679_177853679	3.20023	CAGCAGG	AK220554|Phactr3|74189|phosphatase and actin regulator 3	NM_001177789|Phactr3|74189|phosphatase and actin regulator 3	NM_001177790|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr15_+_79059802_79059887	3.1992	CAGCAGG	NM_001045558|Pick1|18693|protein interacting with C kinase 1	AK090155|Pick1|18693|protein interacting with C kinase 1	AK050224|Pick1|18693|protein interacting with C kinase 1	BC023088|Pick1|18693|protein interacting with C kinase 1	BC048788|Pick1|18693|protein interacting with C kinase 1	AK162724|Pick1|18693|protein interacting with C kinase 1
mm9_v1_chr1_+_120285634_120285634	3.19815	CAGCAGG	AK042402|Clasp1|76707|CLIP associating protein 1	NM_001081276|Clasp1|76707|CLIP associating protein 1	NM_029709|Clasp1|76707|CLIP associating protein 1	NM_177548|Clasp1|76707|CLIP associating protein 1
mm9_v1_chr1_+_155500166_155500298	3.1951	CAGCAGG	NM_026380|Rgs8|67792|regulator of G-protein signaling 8	BC065056|Rgs8|67792|regulator of G-protein signaling 8	AK044337|Rgs8|67792|regulator of G-protein signaling 8	AK142301|Rgs8|67792|regulator of G-protein signaling 8
mm9_v1_chr1_+_137043277_137043554	3.18675	CAGCAGG	BC018479|Arl8a|68724|ADP-ribosylation factor-like 8A	NM_026823|Arl8a|68724|ADP-ribosylation factor-like 8A	AB185207|Arl8a|68724|ADP-ribosylation factor-like 8A
mm9_v1_chr18_+_37105758_37105860	3.18169	CAGCAGG	AK129120|Pcdha3|192163|protocadherin alpha 3	BC141348|Pcdha3|192163|protocadherin alpha 3	AY013761|Pcdha3|192163|protocadherin alpha 3	NM_138662|Pcdha3|192163|protocadherin alpha 3
mm9_v1_chr9_-_112090150_112090479	3.17875	CAGCAGG	BC128376|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AF324451|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_033264|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK159004|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK002950|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	BC027107|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK160860|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177615|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177620|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_028755|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chr15_-_98638348_98638375	3.17412	CAGCAGG	AK158894|Ddn|13199|dendrin	NM_001013741|Ddn|13199|dendrin
mm9_v1_chr2_-_102241053_102241195	3.17318	CAGCAGG	AJ278191|Trim44|80985|tripartite motif-containing 44	NM_020267|Trim44|80985|tripartite motif-containing 44
mm9_v1_chr11_+_6191599_6191621	3.17013	CAGCAGG	AK147289|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	NM_010956|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	AK169286|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)
mm9_v1_chr13_-_24083033_24083082	3.16895	CAGCAGG	AK148468|Scgn|214189|secretagogin, EF-hand calcium binding protein	BC016093|Scgn|214189|secretagogin, EF-hand calcium binding protein	NM_145399|Scgn|214189|secretagogin, EF-hand calcium binding protein
mm9_v1_chr11_-_86807216_86807263	3.14532	CAGCAGG	NM_001005341|Ypel2|77864|yippee-like 2 (Drosophila)
mm9_v1_chr13_+_19040215_19040285	3.14389	CAGCAGG	AK132168|Amph|218038|amphiphysin	BC054718|Amph|218038|amphiphysin	NM_175007|Amph|218038|amphiphysin	AK047144|Amph|218038|amphiphysin
mm9_v1_chr18_+_37303622_37303622	3.14352	CAGCAGG	AY013769|Pcdhac2|353237|protocadherin alpha subfamily C, 2	NM_001003672|Pcdhac2|353237|protocadherin alpha subfamily C, 2
mm9_v1_chr9_+_104472090_104472120	3.12041	CAGCAGG	AK043692|Cpne4|74020|copine IV	AK014396|Cpne4|74020|copine IV	BC043087|Cpne4|74020|copine IV	BC063081|Cpne4|74020|copine IV	NM_028719|Cpne4|74020|copine IV
mm9_v1_chr18_+_37152024_37152120	3.1066	CAGCAGG	BC139424|Pcdha8|353235|protocadherin alpha 8	BC139426|Pcdha8|353235|protocadherin alpha 8	AY013766|Pcdha8|353235|protocadherin alpha 8	NM_201243|Pcdha8|353235|protocadherin alpha 8
mm9_v1_chr11_-_119409041_119409133	3.06666	CAGCAGG	BC139018|Nptx1|18164|neuronal pentraxin 1	BC139020|Nptx1|18164|neuronal pentraxin 1	BC093479|Nptx1|18164|neuronal pentraxin 1	NM_008730|Nptx1|18164|neuronal pentraxin 1
mm9_v1_chr19_-_50752974_50753135	3.06371	CAGCAGG	AF137367|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	AF195056|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	AF284755|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	NM_021377|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	AK030440|Sorcs1|58178|VPS10 domain receptor protein SORCS 1
mm9_v1_chr9_+_43851466_43851476	3.04085	CAGCAGG	NM_009382|Thy1|21838|thymus cell antigen 1, theta
mm9_v1_chr14_+_69955194_69955282	3.03308	CAGCAGG	NM_026174|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK045342|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK004761|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK042053|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	BC052090|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	BC043134|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4
mm9_v1_chr7_+_38968802_38968906	3.0258	CAGCAGG	NM_028166|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	AK146474|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	AK005449|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	AK032342|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	AK032135|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	BC010476|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	BC085480|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	BC092099|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene
mm9_v1_chr7_+_4071087_4071169	3.02517	CAGCAGG	AK043998|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_001001454|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_001109765|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_021324|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK031550|Ttyh1|57776|tweety homolog 1 (Drosophila)
mm9_v1_chr7_-_148068161_148068207	3.01393	CAGCAGG	AF299338|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	NM_022433|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)
mm9_v1_chr10_+_75716580_75716636	3.01174	CAGCAGG	NM_009115|S100b|20203|S100 protein, beta polypeptide, neural	BC061178|S100b|20203|S100 protein, beta polypeptide, neural	AK135083|S100b|20203|S100 protein, beta polypeptide, neural	AK161945|S100b|20203|S100 protein, beta polypeptide, neural
mm9_v1_chr13_+_83643032_83643032	2.99631	CAGCAGG	NM_001170537|Mef2c|17260|myocyte enhancer factor 2C	NM_025282|Mef2c|17260|myocyte enhancer factor 2C
mm9_v1_chr14_+_21493519_21493615	2.98916	CAGCAGG	AK036519|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	NM_001168273|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	NM_172596|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	AK011880|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	AK122199|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	BC040370|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)
mm9_v1_chr18_+_37133455_37133703	2.97126	CAGCAGG	BC080863|Pcdha7|12939|protocadherin alpha 7	AY013765|Pcdha7|12939|protocadherin alpha 7	NM_009957|Pcdha7|12939|protocadherin alpha 7	AB008179|Pcdha7|12939|protocadherin alpha 7	EU854476|Pcdha7|12939|protocadherin alpha 7
mm9_v1_chr5_-_122952228_122952237	2.96548	CAGCAGG	NM_001110140|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	NM_009722|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr13_+_54472705_54472742	2.96222	CAGCAGG	NM_009946|Cplx2|12890|complexin 2
mm9_v1_chr4_+_137818150_137818165	2.92127	CAGCAGG	AB008867|Kif17|16559|kinesin family member 17	NM_001190978|Kif17|16559|kinesin family member 17	NM_010623|Kif17|16559|kinesin family member 17
mm9_v1_chr12_+_88288287_88288431	2.91911	CAGCAGG	NM_173735|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	AK165964|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	AK154476|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	BC026384|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	AK122546|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	AK160643|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene
mm9_v1_chr5_+_31014229_31014273	2.91761	CAGCAGG	AK044866|Dpysl5|65254|dihydropyrimidinase-like 5	BC065054|Dpysl5|65254|dihydropyrimidinase-like 5	NM_023047|Dpysl5|65254|dihydropyrimidinase-like 5	BC103789|Dpysl5|65254|dihydropyrimidinase-like 5
mm9_v1_chr10_+_57718246_57718291	2.91303	CAGCAGG	AK008992|Gcc2|70297|GRIP and coiled-coil domain containing 2	AK011206|Gcc2|70297|GRIP and coiled-coil domain containing 2	AK045701|Gcc2|70297|GRIP and coiled-coil domain containing 2	NM_027375|Gcc2|70297|GRIP and coiled-coil domain containing 2	BC139007|Gcc2|70297|GRIP and coiled-coil domain containing 2	BC145495|Gcc2|70297|GRIP and coiled-coil domain containing 2	BC027339|Gcc2|70297|GRIP and coiled-coil domain containing 2
mm9_v1_chr16_-_44332950_44332950	2.88779	CAGCAGG	BC079584|Sidt1|320007|SID1 transmembrane family, member 1	NM_001159419|Sidt1|320007|SID1 transmembrane family, member 1	NM_198034|Sidt1|320007|SID1 transmembrane family, member 1
mm9_v1_chr8_+_11728104_11728202	2.85971	CAGCAGG	NM_001113517|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK129064|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK139156|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)
mm9_v1_chr2_+_102546576_102546605	2.84107	CAGCAGG	AB007812|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	BC138255|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	BC138256|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077515|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_011393|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AB007811|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chrX_+_130939318_130939458	2.8155	CAGCAGG	AK038488|Drp2|13497|dystrophin related protein 2	NM_010078|Drp2|13497|dystrophin related protein 2	AK081426|Drp2|13497|dystrophin related protein 2	AK034383|Drp2|13497|dystrophin related protein 2	BC125345|Drp2|13497|dystrophin related protein 2	BC125347|Drp2|13497|dystrophin related protein 2
mm9_v1_chr4_+_128814102_128814307	2.81522	CAGCAGG	AK005096|Fndc5|384061|fibronectin type III domain containing 5	AJ401376|Fndc5|384061|fibronectin type III domain containing 5	BC109184|Fndc5|384061|fibronectin type III domain containing 5	NM_027402|Fndc5|384061|fibronectin type III domain containing 5	BC109183|Fndc5|384061|fibronectin type III domain containing 5
mm9_v1_chr19_-_7416286_7416363	2.81415	CAGCAGG	BC058556|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	AK172444|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080388|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080389|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_007928|Mark2|13728|MAP/microtubule affinity-regulating kinase 2
mm9_v1_chr5_-_74464390_74464465	2.80657	CAGCAGG	BC039916|Usp46|69727|ubiquitin specific peptidase 46	NM_177561|Usp46|69727|ubiquitin specific peptidase 46	AK145298|Usp46|69727|ubiquitin specific peptidase 46
mm9_v1_chr6_-_92484838_92484854	2.8058	CAGCAGG	AK147576|Prickle2|243548|prickle homolog 2 (Drosophila)	AK147628|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134459|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr8_-_107995282_107995321	2.79689	CAGCAGG	AK009771|Tppp3|67971|tubulin polymerization-promoting protein family member 3	AK012437|Tppp3|67971|tubulin polymerization-promoting protein family member 3	AK155018|Tppp3|67971|tubulin polymerization-promoting protein family member 3	AK160507|Tppp3|67971|tubulin polymerization-promoting protein family member 3	NM_026481|Tppp3|67971|tubulin polymerization-promoting protein family member 3
mm9_v1_chr2_-_5635547_5635807	2.79666	CAGCAGG	AK053173|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK170123|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK170777|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	NM_177343|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK147616|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID
mm9_v1_chr4_-_57314708_57314708	2.79187	CAGCAGG	AK052928|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3	NM_011207|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3
mm9_v1_chr9_-_44096170_44096326	2.79062	CAGCAGG	AY040865|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AF411084|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AJ426047|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AF425077|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	BC016200|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AK043147|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	NM_138955|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4
mm9_v1_chr11_-_33743416_33743626	2.78655	CAGCAGG	AY647242|Kcnip1|70357|Kv channel-interacting protein 1	AY171234|Kcnip1|70357|Kv channel-interacting protein 1	BC034241|Kcnip1|70357|Kv channel-interacting protein 1	DQ148493|Kcnip1|70357|Kv channel-interacting protein 1	AK013657|Kcnip1|70357|Kv channel-interacting protein 1	AK014313|Kcnip1|70357|Kv channel-interacting protein 1	AK046398|Kcnip1|70357|Kv channel-interacting protein 1	AK045948|Kcnip1|70357|Kv channel-interacting protein 1	NM_001190885|Kcnip1|70357|Kv channel-interacting protein 1	NM_027398|Kcnip1|70357|Kv channel-interacting protein 1
mm9_v1_chr2_+_177876635_177876639	2.78523	CAGCAGG	AK135144|Phactr3|74189|phosphatase and actin regulator 3	NM_028806|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr5_-_123582637_123582709	2.78041	CAGCAGG	NM_175092|Rhof|23912|ras homolog gene family, member f
mm9_v1_chr2_+_30837798_30837902	2.76027	CAGCAGG	NM_028846|Usp20|74270|ubiquitin specific peptidase 20	AF449715|Usp20|74270|ubiquitin specific peptidase 20	AK054279|Usp20|74270|ubiquitin specific peptidase 20	AK047242|Usp20|74270|ubiquitin specific peptidase 20	AK042612|Usp20|74270|ubiquitin specific peptidase 20	AK087412|Usp20|74270|ubiquitin specific peptidase 20	AK163663|Usp20|74270|ubiquitin specific peptidase 20	AK173083|Usp20|74270|ubiquitin specific peptidase 20	AK029890|Usp20|74270|ubiquitin specific peptidase 20
mm9_v1_chr6_-_92431385_92431385	2.75951	CAGCAGG	AK020123|Prickle2|243548|prickle homolog 2 (Drosophila)	AK032631|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134460|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr4_+_120550473_120550605	2.75138	CAGCAGG	AY326953|Rims3|242662|regulating synaptic membrane exocytosis 3	BC115536|Rims3|242662|regulating synaptic membrane exocytosis 3	NM_182929|Rims3|242662|regulating synaptic membrane exocytosis 3	AK122226|Rims3|242662|regulating synaptic membrane exocytosis 3
mm9_v1_chr1_-_136131981_136132033	2.73129	CAGCAGG	NM_001008533|Adora1|11539|adenosine A1 receptor	AK038774|Adora1|11539|adenosine A1 receptor	NM_001039510|Adora1|11539|adenosine A1 receptor	AK134532|Adora1|11539|adenosine A1 receptor
mm9_v1_chr18_+_86564229_86564343	2.72311	CAGCAGG	AK081325|Neto1|246317|neuropilin (NRP) and tolloid (TLL)-like 1	NM_144946|Neto1|246317|neuropilin (NRP) and tolloid (TLL)-like 1
mm9_v1_chr7_+_104991443_104991474	2.71634	CAGCAGG	BC055740|Pak1|18479|p21 protein (Cdc42/Rac)-activated kinase 1	BC060157|Pak1|18479|p21 protein (Cdc42/Rac)-activated kinase 1	NM_011035|Pak1|18479|p21 protein (Cdc42/Rac)-activated kinase 1	BC079838|Pak1|18479|p21 protein (Cdc42/Rac)-activated kinase 1
mm9_v1_chr3_+_105508375_105508375	2.70428	CAGCAGG	AK078368|6530418L21Rik|109050|RIKEN cDNA 6530418L21 gene	NM_001163356|6530418L21Rik|109050|RIKEN cDNA 6530418L21 gene
mm9_v1_chr9_+_51573434_51573478	2.70254	CAGCAGG	AK082060|Arhgap20|244867|Rho GTPase activating protein 20	AK046916|Arhgap20|244867|Rho GTPase activating protein 20	AK040756|Arhgap20|244867|Rho GTPase activating protein 20	NM_175535|Arhgap20|244867|Rho GTPase activating protein 20	AK035563|Arhgap20|244867|Rho GTPase activating protein 20
mm9_v1_chr10_+_115614313_115614481	2.69157	CAGCAGG	NM_001161839|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	NM_001161838|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	NM_001161840|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	AF041866|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	AF129509|Ptprr|19279|protein tyrosine phosphatase, receptor type, R
mm9_v1_chr2_+_124436031_124436031	2.6867	CAGCAGG	AB091532|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_172537|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199238|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199239|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199240|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199241|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr12_-_70782807_70782838	2.67508	CAGCAGG	NM_001135559|Sos2|20663|son of sevenless homolog 2 (Drosophila)
mm9_v1_chr2_-_57905140_57905276	2.65519	CAGCAGG	DQ334270|Ermn|77767|ermin, ERM-like protein	BC089515|Ermn|77767|ermin, ERM-like protein	NM_029972|Ermn|77767|ermin, ERM-like protein	BC090670|Ermn|77767|ermin, ERM-like protein	AK078089|Ermn|77767|ermin, ERM-like protein	AK136820|Ermn|77767|ermin, ERM-like protein	AK137305|Ermn|77767|ermin, ERM-like protein	AK020733|Ermn|77767|ermin, ERM-like protein	AK220372|Ermn|77767|ermin, ERM-like protein
mm9_v1_chr11_+_68913653_68913659	2.65427	CAGCAGG	AK148202|Per1|18626|period homolog 1 (Drosophila)	AK172958|Per1|18626|period homolog 1 (Drosophila)	NM_001159367|Per1|18626|period homolog 1 (Drosophila)
mm9_v1_chr2_-_92274110_92274239	2.64611	CAGCAGG	AB003433|Cry2|12953|cryptochrome 2 (photolyase-like)	AK172994|Cry2|12953|cryptochrome 2 (photolyase-like)	BC054794|Cry2|12953|cryptochrome 2 (photolyase-like)	BC066799|Cry2|12953|cryptochrome 2 (photolyase-like)	AK037778|Cry2|12953|cryptochrome 2 (photolyase-like)	AK041696|Cry2|12953|cryptochrome 2 (photolyase-like)	AF156987|Cry2|12953|cryptochrome 2 (photolyase-like)	AK133781|Cry2|12953|cryptochrome 2 (photolyase-like)	NM_001113333|Cry2|12953|cryptochrome 2 (photolyase-like)	NM_009963|Cry2|12953|cryptochrome 2 (photolyase-like)	AK051524|Cry2|12953|cryptochrome 2 (photolyase-like)
mm9_v1_chr7_-_53080056_53080125	2.64104	CAGCAGG	BC029692|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14	AK044725|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14	AK080732|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14	BC031753|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14	NM_145963|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14	AK030711|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14
mm9_v1_chr2_+_25036276_25036300	2.63792	CAGCAGG	AY046077|Nrarp|67122|Notch-regulated ankyrin repeat protein	NM_025980|Nrarp|67122|Notch-regulated ankyrin repeat protein	BC020293|Nrarp|67122|Notch-regulated ankyrin repeat protein	BC048088|Nrarp|67122|Notch-regulated ankyrin repeat protein
mm9_v1_chr7_-_72301384_72301483	2.63345	CAGCAGG	NM_183087|Fam189a1|70638|family with sequence similarity 189, member A1
mm9_v1_chr13_+_84361874_84361961	2.63222	CAGCAGG	NM_175187|Tmem161b|72745|transmembrane protein 161B	AK035319|Tmem161b|72745|transmembrane protein 161B	BC060067|Tmem161b|72745|transmembrane protein 161B	AK013305|Tmem161b|72745|transmembrane protein 161B	AK088393|Tmem161b|72745|transmembrane protein 161B	AK051974|Tmem161b|72745|transmembrane protein 161B	BC051663|Tmem161b|72745|transmembrane protein 161B
mm9_v1_chr6_+_137359231_137359310	2.62305	CAGCAGG	NM_001164402|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	NM_001164403|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	U37465|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	U37466|Ptpro|19277|protein tyrosine phosphatase, receptor type, O
mm9_v1_chr6_-_56747675_56747806	2.61669	CAGCAGG	AK129374|Kbtbd2|210973|kelch repeat and BTB (POZ) domain containing 2	AK028396|Kbtbd2|210973|kelch repeat and BTB (POZ) domain containing 2	NM_145958|Kbtbd2|210973|kelch repeat and BTB (POZ) domain containing 2
mm9_v1_chr6_+_137200819_137200985	2.60313	CAGCAGG	NM_001164401|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	NM_011216|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	AK045929|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	AF135166|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	BC052743|Ptpro|19277|protein tyrosine phosphatase, receptor type, O
mm9_v1_chr15_-_79664645_79664773	2.59168	CAGCAGG	BC011199|Cbx6|494448|chromobox homolog 6	BC048240|Cbx6|494448|chromobox homolog 6	AK004679|Cbx6|494448|chromobox homolog 6	AK090253|Cbx6|494448|chromobox homolog 6	AK146048|Cbx6|494448|chromobox homolog 6	AK146103|Cbx6|494448|chromobox homolog 6	AY394488|Npcd|504193|neuronal pentraxin chromo domain	AY394489|Npcd|504193|neuronal pentraxin chromo domain	AY395907|Npcd|504193|neuronal pentraxin chromo domain	AK035250|Cbx6|494448|chromobox homolog 6	NM_001013360|Npcd|504193|neuronal pentraxin chromo domain	NM_001013362|Npcd|504193|neuronal pentraxin chromo domain	NM_028763|Cbx6|494448|chromobox homolog 6
mm9_v1_chr3_-_40886957_40886982	2.57963	CAGCAGG	NM_027558|Pgrmc2|70804|progesterone receptor membrane component 2
mm9_v1_chr19_-_19185685_19185685	2.57577	CAGCAGG	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr9_-_77391865_77391878	2.57271	CAGCAGG	AK082721|Lrrc1|214345|leucine rich repeat containing 1	NM_172528|Lrrc1|214345|leucine rich repeat containing 1	AK053293|Lrrc1|214345|leucine rich repeat containing 1
mm9_v1_chr15_-_93167308_93167408	2.55979	CAGCAGG	AK148634|Yaf2|67057|YY1 associated factor 2	AB100452|Yaf2|67057|YY1 associated factor 2	AB100453|Yaf2|67057|YY1 associated factor 2	AK005008|Yaf2|67057|YY1 associated factor 2	AK011702|Yaf2|67057|YY1 associated factor 2	NM_024189|Yaf2|67057|YY1 associated factor 2
mm9_v1_chr10_-_61693963_61693977	2.54918	CAGCAGG	AK012471|Tspan15|70423|tetraspanin 15	NM_197996|Tspan15|70423|tetraspanin 15	AK172169|Tspan15|70423|tetraspanin 15
mm9_v1_chr18_-_38094995_38095137	2.54912	CAGCAGG	AK140734|Diap1|13367|diaphanous homolog 1 (Drosophila)	AK220466|Diap1|13367|diaphanous homolog 1 (Drosophila)	NM_007858|Diap1|13367|diaphanous homolog 1 (Drosophila)	U96963|Diap1|13367|diaphanous homolog 1 (Drosophila)	BC070412|Diap1|13367|diaphanous homolog 1 (Drosophila)	AK012707|Diap1|13367|diaphanous homolog 1 (Drosophila)
mm9_v1_chr13_-_54712629_54712744	2.54492	CAGCAGG	AK029382|Cltb|74325|clathrin, light polypeptide (Lcb)	NM_028870|Cltb|74325|clathrin, light polypeptide (Lcb)	BC070404|Cltb|74325|clathrin, light polypeptide (Lcb)	AK045989|Cltb|74325|clathrin, light polypeptide (Lcb)	AK159480|Cltb|74325|clathrin, light polypeptide (Lcb)	AK167531|Cltb|74325|clathrin, light polypeptide (Lcb)	AK146816|Cltb|74325|clathrin, light polypeptide (Lcb)
mm9_v1_chr17_-_82137708_82137731	2.54316	CAGCAGG	AF004666|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_001112798|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_011406|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	U70033|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	AK084813|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene	AK085810|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene
mm9_v1_chr2_-_90420626_90420803	2.53782	CAGCAGG	AY038891|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AY039232|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AK147318|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AK147556|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	D45212|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	NM_008982|Ptprj|19271|protein tyrosine phosphatase, receptor type, J
mm9_v1_chr7_-_148067703_148067786	2.52681	CAGCAGG	BC025878|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	AK075861|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	FJ621493|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	EU886466|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	AF299339|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	NM_001127351|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	NM_001177804|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)
mm9_v1_chr9_-_42913797_42913909	2.51636	CAGCAGG	AK009331|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12	AK122267|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12	NM_027144|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12
mm9_v1_chr10_+_115455342_115455485	2.50257	CAGCAGG	AK051719|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	AK028054|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	NM_011217|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	D31898|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	BC119230|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	BC120547|Ptprr|19279|protein tyrosine phosphatase, receptor type, R
mm9_v1_chr5_+_89012596_89012599	2.50199	CAGCAGG	BC049127|Rufy3|52822|RUN and FYVE domain containing 3	NM_027530|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr17_-_27760308_27760448	2.49467	CAGCAGG	AF264064|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	NM_019837|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	BC046805|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	BC016534|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3
mm9_v1_chr3_-_107261815_107261829	2.48719	CAGCAGG	BC024837|Kcnc4|99738|potassium voltage gated channel, Shaw-related subfamily, member 4	NM_145922|Kcnc4|99738|potassium voltage gated channel, Shaw-related subfamily, member 4
mm9_v1_chr1_+_108068405_108068445	2.48138	CAGCAGG	NM_133821|Phlpp1|98432|PH domain and leucine rich repeat protein phosphatase 1
mm9_v1_chr12_+_112404645_112404765	2.44441	CAGCAGG	AK147304|Traf3|22031|TNF receptor-associated factor 3	NM_001048206|Traf3|22031|TNF receptor-associated factor 3	NM_011632|Traf3|22031|TNF receptor-associated factor 3	U21050|Traf3|22031|TNF receptor-associated factor 3
mm9_v1_chr9_+_45646611_45646685	2.44169	CAGCAGG	NM_001145947|Bace1|23821|beta-site APP cleaving enzyme 1	NM_011792|Bace1|23821|beta-site APP cleaving enzyme 1	AK033112|Bace1|23821|beta-site APP cleaving enzyme 1	AK041285|Bace1|23821|beta-site APP cleaving enzyme 1	AK080498|Bace1|23821|beta-site APP cleaving enzyme 1	AK082317|Bace1|23821|beta-site APP cleaving enzyme 1	AK163583|Bace1|23821|beta-site APP cleaving enzyme 1	AK046175|Bace1|23821|beta-site APP cleaving enzyme 1	AK082230|Bace1|23821|beta-site APP cleaving enzyme 1	AK049626|Bace1|23821|beta-site APP cleaving enzyme 1	AF190726|Bace1|23821|beta-site APP cleaving enzyme 1	AK014464|Bace1|23821|beta-site APP cleaving enzyme 1	BC048189|Bace1|23821|beta-site APP cleaving enzyme 1
mm9_v1_chr14_-_76956445_76956583	2.44127	CAGCAGG	AY425619|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	NM_001160326|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	AK012850|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2
mm9_v1_chr1_-_65003291_65003407	2.42464	CAGCAGG	AK034959|Plekhm3|241075|pleckstrin homology domain containing, family M, member 3	BC063098|Plekhm3|241075|pleckstrin homology domain containing, family M, member 3	NM_001039493|Plekhm3|241075|pleckstrin homology domain containing, family M, member 3
mm9_v1_chr14_+_67530044_67530096	2.4147	CAGCAGG	AK043910|Pnma2|239157|paraneoplastic antigen MA2	NM_175498|Pnma2|239157|paraneoplastic antigen MA2	AK220357|Pnma2|239157|paraneoplastic antigen MA2	AK043718|Pnma2|239157|paraneoplastic antigen MA2
mm9_v1_chr1_-_94998418_94998474	2.40982	CAGCAGG	BC045161|Kif1a|16560|kinesin family member 1A	BC054538|Kif1a|16560|kinesin family member 1A	BC062891|Kif1a|16560|kinesin family member 1A	NM_001110315|Kif1a|16560|kinesin family member 1A	NM_008440|Kif1a|16560|kinesin family member 1A
mm9_v1_chr7_-_148615247_148615354	2.39094	CAGCAGG	AF243130|Cend1|57754|cell cycle exit and neuronal differentiation 1	AK005092|Cend1|57754|cell cycle exit and neuronal differentiation 1	BC023032|Cend1|57754|cell cycle exit and neuronal differentiation 1	AK079045|Cend1|57754|cell cycle exit and neuronal differentiation 1	NM_021316|Cend1|57754|cell cycle exit and neuronal differentiation 1
mm9_v1_chr18_+_23573908_23573935	2.38351	CAGCAGG	NM_010087|Dtna|13527|dystrobrevin alpha	NM_207650|Dtna|13527|dystrobrevin alpha
mm9_v1_chr2_+_128891655_128891754	2.37812	CAGCAGG	NM_027192|Ttl|69737|tubulin tyrosine ligase	BC024414|Ttl|69737|tubulin tyrosine ligase	AK084377|Ttl|69737|tubulin tyrosine ligase
mm9_v1_chr7_-_112788821_112788929	2.37637	CAGCAGG	BC028310|Arfip2|76932|ADP-ribosylation factor interacting protein 2	BC013794|Arfip2|76932|ADP-ribosylation factor interacting protein 2	BC022942|Arfip2|76932|ADP-ribosylation factor interacting protein 2	AK009100|Arfip2|76932|ADP-ribosylation factor interacting protein 2	AK154772|Arfip2|76932|ADP-ribosylation factor interacting protein 2	NM_029802|Arfip2|76932|ADP-ribosylation factor interacting protein 2
mm9_v1_chr15_-_96472392_96472392	2.36956	CAGCAGG	AK034130|Slc38a1|105727|solute carrier family 38, member 1	NM_134086|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr17_-_80963173_80963173	2.36784	CAGCAGG	AK157995|Cdkl4|381113|cyclin-dependent kinase-like 4	NM_001033443|Cdkl4|381113|cyclin-dependent kinase-like 4
mm9_v1_chr8_-_93659394_93659394	2.35169	CAGCAGG	NM_010241|Aktip|14339|thymoma viral proto-oncogene 1 interacting protein
mm9_v1_chr8_+_122668828_122668828	2.34645	CAGCAGG	BC027126|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	NM_001163760|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene
mm9_v1_chr6_+_115803545_115803666	2.33667	CAGCAGG	NM_001167763|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	NM_031177|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	AK044456|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	AK167330|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	AK167412|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	BC060621|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	AK131115|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	BC066083|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	BC067415|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	AK031308|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)
mm9_v1_chr15_+_83610434_83610456	2.30677	CAGCAGG	AK048421|Mpped1|223726|metallophosphoesterase domain containing 1	NM_172610|Mpped1|223726|metallophosphoesterase domain containing 1
mm9_v1_chr9_+_80012837_80012863	2.2994	CAGCAGG	NM_001039546|Myo6|17920|myosin VI	AK053882|Myo6|17920|myosin VI
mm9_v1_chr1_+_75476106_75476188	2.27725	CAGCAGG	NM_177056|Tmem198|319998|transmembrane protein 198	BC059868|Tmem198|319998|transmembrane protein 198	AK038957|Tmem198|319998|transmembrane protein 198	AK082334|Tmem198|319998|transmembrane protein 198
mm9_v1_chr9_+_107904919_107905018	2.27582	CAGCAGG	AK172921|Ip6k1|27399|inositol hexaphosphate kinase 1	AK037925|Ip6k1|27399|inositol hexaphosphate kinase 1	AK088872|Ip6k1|27399|inositol hexaphosphate kinase 1	BC053030|Ip6k1|27399|inositol hexaphosphate kinase 1	AK171310|Ip6k1|27399|inositol hexaphosphate kinase 1	AK166143|Ip6k1|27399|inositol hexaphosphate kinase 1	BC059006|Ip6k1|27399|inositol hexaphosphate kinase 1	NM_013785|Ip6k1|27399|inositol hexaphosphate kinase 1
mm9_v1_chr16_-_38713106_38713149	2.25776	CAGCAGG	NM_020260|Arhgap31|12549|Rho GTPase activating protein 31
mm9_v1_chr5_-_49280703_49280795	2.24027	CAGCAGG	AF453243|Kcnip4|80334|Kv channel interacting protein 4	AK165773|Kcnip4|80334|Kv channel interacting protein 4	AK049662|Kcnip4|80334|Kv channel interacting protein 4	DQ148503|Kcnip4|80334|Kv channel interacting protein 4	AK039048|Kcnip4|80334|Kv channel interacting protein 4	NM_030265|Kcnip4|80334|Kv channel interacting protein 4
mm9_v1_chr10_+_127896244_127896376	2.22967	CAGCAGG	NM_001114096|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	NM_001114097|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	NM_198160|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	BC058720|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	AK089461|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	AK170530|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	AK146971|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	BC040363|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
mm9_v1_chr15_+_99055291_99055406	2.22748	CAGCAGG	BC141013|Kcnh3|16512|potassium voltage-gated channel, subfamily H (eag-related), member 3	BC145145|Kcnh3|16512|potassium voltage-gated channel, subfamily H (eag-related), member 3	AY380579|Kcnh3|16512|potassium voltage-gated channel, subfamily H (eag-related), member 3	NM_010601|Kcnh3|16512|potassium voltage-gated channel, subfamily H (eag-related), member 3
mm9_v1_chr2_+_32390780_32390878	2.22741	CAGCAGG	AK131145|Fam102a|98952|family with sequence similarity 102, member A	AK170536|Fam102a|98952|family with sequence similarity 102, member A	AK049032|Fam102a|98952|family with sequence similarity 102, member A	NM_153560|Fam102a|98952|family with sequence similarity 102, member A
mm9_v1_chr10_-_6980199_6980474	2.22517	CAGCAGG	AK042973|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	NM_133485|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AK047607|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AK085997|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AF407167|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c
mm9_v1_chr2_+_163820920_163821078	2.22347	CAGCAGG	AK150414|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK151294|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK004872|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK011389|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	NM_018753|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AF058797|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK083367|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK158932|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK204033|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC132121|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC138512|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr5_-_149364353_149364422	2.21896	CAGCAGG	NM_011908|Ubl3|24109|ubiquitin-like 3	BC024507|Ubl3|24109|ubiquitin-like 3	BC043729|Ubl3|24109|ubiquitin-like 3
mm9_v1_chr4_+_34011567_34011625	2.21536	CAGCAGG	BC075644|Cnr1|12801|cannabinoid receptor 1 (brain)	BC070447|Cnr1|12801|cannabinoid receptor 1 (brain)	NM_007726|Cnr1|12801|cannabinoid receptor 1 (brain)	AY522554|Cnr1|12801|cannabinoid receptor 1 (brain)
mm9_v1_chr9_-_99040505_99040647	2.2136	CAGCAGG	AK090116|Pik3cb|74769|phosphatidylinositol 3-kinase, catalytic, beta polypeptide	BC039650|Pik3cb|74769|phosphatidylinositol 3-kinase, catalytic, beta polypeptide	AK154106|Pik3cb|74769|phosphatidylinositol 3-kinase, catalytic, beta polypeptide	NM_029094|Pik3cb|74769|phosphatidylinositol 3-kinase, catalytic, beta polypeptide
mm9_v1_chr10_-_80477630_80477676	2.20406	CAGCAGG	AK147843|Gng7|14708|guanine nucleotide binding protein (G protein), gamma 7	AK141541|Gng7|14708|guanine nucleotide binding protein (G protein), gamma 7	AK177829|Gng7|14708|guanine nucleotide binding protein (G protein), gamma 7	AY035844|Gng7|14708|guanine nucleotide binding protein (G protein), gamma 7	NM_010319|Gng7|14708|guanine nucleotide binding protein (G protein), gamma 7
mm9_v1_chr7_-_147288290_147288306	2.20193	CAGCAGG	BC028662|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	AK007494|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	AK042452|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	AK044731|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	AK079410|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	NM_026928|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene
mm9_v1_chr8_+_75095914_75096060	2.1961	CAGCAGG	AK157969|Tmem38a|74166|transmembrane protein 38A	AK165818|Tmem38a|74166|transmembrane protein 38A	EF988666|Tmem38a|74166|transmembrane protein 38A	BC014728|Tmem38a|74166|transmembrane protein 38A	AK034868|Nwd1|319555|NACHT and WD repeat domain containing 1	BC024788|Tmem38a|74166|transmembrane protein 38A	NM_144534|Tmem38a|74166|transmembrane protein 38A	AB261158|Tmem38a|74166|transmembrane protein 38A
mm9_v1_chr15_-_31297286_31297513	2.19455	CAGCAGG	AK089667|Ankrd33b|67434|ankyrin repeat domain 33B	AK170894|Ankrd33b|67434|ankyrin repeat domain 33B	AK017844|Ankrd33b|67434|ankyrin repeat domain 33B	AK002572|Ankrd33b|67434|ankyrin repeat domain 33B	AK012871|Ankrd33b|67434|ankyrin repeat domain 33B	AK156757|Ankrd33b|67434|ankyrin repeat domain 33B	BC100327|Ankrd33b|67434|ankyrin repeat domain 33B	NM_001164441|Ankrd33b|67434|ankyrin repeat domain 33B	NM_026153|Ankrd33b|67434|ankyrin repeat domain 33B	NM_027496|Ankrd33b|67434|ankyrin repeat domain 33B
mm9_v1_chr11_+_105451296_105451348	2.19389	CAGCAGG	AK019982|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	NM_181071|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	AK051973|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm9_v1_chrX_+_148578716_148578819	2.187	CAGCAGG	AB275281|Iqsec2|245666|IQ motif and Sec7 domain 2	NM_001114664|Iqsec2|245666|IQ motif and Sec7 domain 2	AY451401|Iqsec2|245666|IQ motif and Sec7 domain 2
mm9_v1_chr9_+_58100961_58101075	2.18674	CAGCAGG	NM_026942|Stoml1|69106|stomatin-like 1	AK045820|Stoml1|69106|stomatin-like 1	BC017536|Stoml1|69106|stomatin-like 1	BC037074|Stoml1|69106|stomatin-like 1	AK148324|Stoml1|69106|stomatin-like 1
mm9_v1_chr13_-_101500877_101500928	2.18515	CAGCAGG	X74145|Cdk7|12572|cyclin-dependent kinase 7	BC068160|Cdk7|12572|cyclin-dependent kinase 7	AK039084|Cdk7|12572|cyclin-dependent kinase 7	AK168286|Cdk7|12572|cyclin-dependent kinase 7	NM_009874|Cdk7|12572|cyclin-dependent kinase 7
mm9_v1_chr12_+_81793587_81793638	2.18129	CAGCAGG	NM_001177503|3830431G21Rik|217682|RIKEN cDNA 3830431G21 gene	AK028383|3830431G21Rik|217682|RIKEN cDNA 3830431G21 gene
mm9_v1_chr17_-_24342446_24342565	2.17134	CAGCAGG	AK036088|Tbc1d24|224617|TBC1 domain family, member 24	AK129304|Tbc1d24|224617|TBC1 domain family, member 24	AK084693|Tbc1d24|224617|TBC1 domain family, member 24	AK086293|Tbc1d24|224617|TBC1 domain family, member 24	AK138431|Tbc1d24|224617|TBC1 domain family, member 24	AK045194|Tbc1d24|224617|TBC1 domain family, member 24	AK083833|Tbc1d24|224617|TBC1 domain family, member 24	AK049754|Tbc1d24|224617|TBC1 domain family, member 24	AK147647|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163847|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163848|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163849|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163850|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163851|Tbc1d24|224617|TBC1 domain family, member 24	NM_173186|Tbc1d24|224617|TBC1 domain family, member 24	AK172594|Ntn3|18209|netrin 3
mm9_v1_chr17_+_8994520_8994643	2.16611	CAGCAGG	AK014090|Pde10a|23984|phosphodiesterase 10A	AY360383|Pde10a|23984|phosphodiesterase 10A	NM_011866|Pde10a|23984|phosphodiesterase 10A	AK147690|Pde10a|23984|phosphodiesterase 10A
mm9_v1_chr17_-_46624611_46624627	2.1657	CAGCAGG	NM_001162864|Ttbk1|106763|tau tubulin kinase 1
mm9_v1_chr9_-_14185685_14185685	2.16337	CAGCAGG	AK173036|Endod1|71946|endonuclease domain containing 1	NM_028013|Endod1|71946|endonuclease domain containing 1
mm9_v1_chr6_+_88674398_88674540	2.14904	CAGCAGG	NM_001166249|Mgll|23945|monoglyceride lipase	NM_011844|Mgll|23945|monoglyceride lipase	AK131645|Mgll|23945|monoglyceride lipase	AK028008|Mgll|23945|monoglyceride lipase	AK148242|Mgll|23945|monoglyceride lipase	AK148395|Mgll|23945|monoglyceride lipase	AJ001118|Mgll|23945|monoglyceride lipase	BC057965|Mgll|23945|monoglyceride lipase	AK215869|Mgll|23945|monoglyceride lipase	AK185666|Mgll|23945|monoglyceride lipase	AK188627|Mgll|23945|monoglyceride lipase	AK206822|Mgll|23945|monoglyceride lipase	AK208240|Mgll|23945|monoglyceride lipase	AK211363|Mgll|23945|monoglyceride lipase
mm9_v1_chr19_+_23833310_23833547	2.14088	CAGCAGG	NM_177034|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147583|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147623|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	BC141181|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1
mm9_v1_chr7_+_148876260_148876262	2.14021	CAGCAGG	NM_023566|Muc2|17831|mucin 2	AF016695|Muc2|17831|mucin 2
mm9_v1_chr5_+_122734363_122734418	2.13977	CAGCAGG	AK135118|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)	AK083481|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)	AK078914|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)	BC068149|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)	NM_177242|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)
mm9_v1_chr2_-_32306938_32306989	2.13589	CAGCAGG	BC037109|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	AK132204|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	AK082756|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	AK049392|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	NM_001164357|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	NM_146118|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm9_v1_chr11_+_110829346_110829387	2.13483	CAGCAGG	AK078905|Kcnj16|16517|potassium inwardly-rectifying channel, subfamily J, member 16	AK128942|Kcnj16|16517|potassium inwardly-rectifying channel, subfamily J, member 16	NM_010604|Kcnj16|16517|potassium inwardly-rectifying channel, subfamily J, member 16	BC033442|Kcnj16|16517|potassium inwardly-rectifying channel, subfamily J, member 16
mm9_v1_chr4_-_115690506_115690572	2.13432	CAGCAGG	AK079598|Faah|14073|fatty acid amide hydrolase	NM_010173|Faah|14073|fatty acid amide hydrolase	BC052321|Faah|14073|fatty acid amide hydrolase
mm9_v1_chr15_-_96473193_96473343	2.12136	CAGCAGG	AK162612|Slc38a1|105727|solute carrier family 38, member 1	AK081724|Slc38a1|105727|solute carrier family 38, member 1	NM_001166458|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr4_+_132567420_132567463	2.12043	CAGCAGG	BC042621|Ahdc1|230793|AT hook, DNA binding motif, containing 1	NM_146155|Ahdc1|230793|AT hook, DNA binding motif, containing 1
mm9_v1_chr5_-_73647856_73647874	2.11949	CAGCAGG	AK164590|Fryl|72313|furry homolog-like (Drosophila)	NM_028194|Fryl|72313|furry homolog-like (Drosophila)
mm9_v1_chr14_+_55713609_55713673	2.11647	CAGCAGG	NM_153083|Thtpa|105663|thiamine triphosphatase
mm9_v1_chr10_-_80693488_80693567	2.09672	CAGCAGG	AY349150|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	BC048903|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK038990|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	NM_178662|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK039411|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK028298|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK038483|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK162959|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK086723|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)
mm9_v1_chr12_-_109241423_109241623	2.0949	CAGCAGG	BC019503|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AF186019|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AK088219|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043551|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043553|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043583|Bcl11b|58208|B-cell leukemia/lymphoma 11B	NM_001079883|Bcl11b|58208|B-cell leukemia/lymphoma 11B	NM_021399|Bcl11b|58208|B-cell leukemia/lymphoma 11B
mm9_v1_chr15_-_78548542_78548542	2.08946	CAGCAGG	BC094219|Elfn2|207393|leucine rich repeat and fibronectin type III, extracellular 2	NM_183141|Elfn2|207393|leucine rich repeat and fibronectin type III, extracellular 2
mm9_v1_chr17_+_86567003_86567165	2.08351	CAGCAGG	AK082438|Prkce|18754|protein kinase C, epsilon	NM_011104|Prkce|18754|protein kinase C, epsilon	AK042994|Prkce|18754|protein kinase C, epsilon
mm9_v1_chrX_-_50973482_50973619	2.07666	CAGCAGG	AK003646|Cxx1b|553127|CAAX box 1 homolog B (human)	BC029838|Cxx1b|553127|CAAX box 1 homolog B (human)	NM_001018063|Cxx1b|553127|CAAX box 1 homolog B (human)
mm9_v1_chr8_+_114060341_114060576	2.05762	CAGCAGG	AK079338|Znrf1|170737|zinc and ring finger 1	NM_001168621|Znrf1|170737|zinc and ring finger 1	NM_001168622|Znrf1|170737|zinc and ring finger 1	NM_133206|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr5_-_8622882_8622951	2.05448	CAGCAGG	BC058808|Rundc3b|242819|RUN domain containing 3B	NM_198620|Rundc3b|242819|RUN domain containing 3B
mm9_v1_chr8_-_74195650_74195661	2.05048	CAGCAGG	NM_001029873|Unc13a|382018|unc-13 homolog A (C. elegans)	AK035920|Unc13a|382018|unc-13 homolog A (C. elegans)
mm9_v1_chr6_-_83781704_83781750	2.04375	CAGCAGG	AK140686|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK159287|Paip2b|232164|poly(A) binding protein interacting protein 2B	NM_146169|Paip2b|232164|poly(A) binding protein interacting protein 2B
mm9_v1_chr19_-_7369859_7369936	2.04003	CAGCAGG	AK172664|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080390|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	AK154864|Mark2|13728|MAP/microtubule affinity-regulating kinase 2
mm9_v1_chr15_+_97998090_97998244	2.03474	CAGCAGG	AK080988|AI836003|239650|expressed sequence AI836003	NM_177716|AI836003|239650|expressed sequence AI836003
mm9_v1_chr5_+_136293975_136293975	2.03469	CAGCAGG	BC058385|Srrm3|58212|serine/arginine repetitive matrix 3	NM_021403|Srrm3|58212|serine/arginine repetitive matrix 3
mm9_v1_chr4_+_132776723_132776800	2.02979	CAGCAGG	NM_027152|Cd164l2|69655|CD164 sialomucin-like 2	AK139809|Cd164l2|69655|CD164 sialomucin-like 2	AK009888|Cd164l2|69655|CD164 sialomucin-like 2	BC111824|Cd164l2|69655|CD164 sialomucin-like 2
mm9_v1_chr5_-_37380147_37380223	2.02633	CAGCAGG	AJ011971|Wfs1|22393|Wolfram syndrome 1 homolog (human)	AF084482|Wfs1|22393|Wolfram syndrome 1 homolog (human)	BC046988|Wfs1|22393|Wolfram syndrome 1 homolog (human)	AK144561|Wfs1|22393|Wolfram syndrome 1 homolog (human)	AK170180|Wfs1|22393|Wolfram syndrome 1 homolog (human)	AK145023|Wfs1|22393|Wolfram syndrome 1 homolog (human)	NM_011716|Wfs1|22393|Wolfram syndrome 1 homolog (human)
mm9_v1_chr16_-_32868355_32868453	2.02007	CAGCAGG	BC057307|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK042428|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK170223|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK122221|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK030368|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	BC060601|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	NM_172615|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK170002|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK171583|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	BC067390|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene
mm9_v1_chr2_+_167757825_167757866	2.01598	CAGCAGG	AK157431|Ptpn1|19246|protein tyrosine phosphatase, non-receptor type 1	NM_011201|Ptpn1|19246|protein tyrosine phosphatase, non-receptor type 1	AK165567|Ptpn1|19246|protein tyrosine phosphatase, non-receptor type 1
mm9_v1_chr13_+_67033746_67033766	2.01431	CAGCAGG	AK085857|Ptdss1|19210|phosphatidylserine synthase 1	NM_008959|Ptdss1|19210|phosphatidylserine synthase 1
mm9_v1_chr5_+_81450617_81450617	2.0127	CAGCAGG	BC088989|Lphn3|319387|latrophilin 3	NM_198702|Lphn3|319387|latrophilin 3
mm9_v1_chr2_+_156373311_156373449	2.00903	CAGCAGG	NM_001164818|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	NM_026661|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	AK169526|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	AK018741|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	AK166203|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	AK028890|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	BC019988|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	BC020112|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	AK187905|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	AK201919|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene	AK210506|0610011L14Rik|68295|RIKEN cDNA 0610011L14 gene
mm9_v1_chr9_-_77195596_77195676	2.00775	CAGCAGG	AK009836|2310046A06Rik|69642|RIKEN cDNA 2310046A06 gene	BC089626|2310046A06Rik|69642|RIKEN cDNA 2310046A06 gene	AK081830|2810047F03Rik|72689|RIKEN cDNA 2810047F03 gene	BC131903|2310046A06Rik|69642|RIKEN cDNA 2310046A06 gene	BC144730|2310046A06Rik|69642|RIKEN cDNA 2310046A06 gene	NM_027150|2310046A06Rik|69642|RIKEN cDNA 2310046A06 gene
mm9_v1_chr5_+_54389740_54389855	1.99434	CAGCAGG	AK173183|Stim2|116873|stromal interaction molecule 2	NM_001081103|Stim2|116873|stromal interaction molecule 2	AK080310|Stim2|116873|stromal interaction molecule 2	BC137881|Stim2|116873|stromal interaction molecule 2	BC145001|Stim2|116873|stromal interaction molecule 2
mm9_v1_chr10_-_80464109_80464109	1.98945	CAGCAGG	AK158963|Gng7|14708|guanine nucleotide binding protein (G protein), gamma 7	NM_001038655|Gng7|14708|guanine nucleotide binding protein (G protein), gamma 7
mm9_v1_chr11_+_97223851_97223864	1.98747	CAGCAGG	AF424814|Socs7|192157|suppressor of cytokine signaling 7	NM_138657|Socs7|192157|suppressor of cytokine signaling 7
mm9_v1_chr9_-_54407862_54407915	1.96044	CAGCAGG	AB016080|Cib2|56506|calcium and integrin binding family member 2	NM_019686|Cib2|56506|calcium and integrin binding family member 2	BC005739|Cib2|56506|calcium and integrin binding family member 2
mm9_v1_chrX_+_100551808_100551914	1.95718	CAGCAGG	NM_009767|Chic1|12212|cysteine-rich hydrophobic domain 1	AK034427|Chic1|12212|cysteine-rich hydrophobic domain 1	AK135974|Chic1|12212|cysteine-rich hydrophobic domain 1	Y11896|Chic1|12212|cysteine-rich hydrophobic domain 1	BC132322|Chic1|12212|cysteine-rich hydrophobic domain 1	BC138730|Chic1|12212|cysteine-rich hydrophobic domain 1	AK013993|Chic1|12212|cysteine-rich hydrophobic domain 1
mm9_v1_chr6_+_129483206_129483210	1.95256	CAGCAGG	AK018687|Gabarapl1|57436|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1	BC024706|Gabarapl1|57436|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1	NM_020590|Gabarapl1|57436|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
mm9_v1_chr14_-_119498586_119498663	1.95203	CAGCAGG	AK038817|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2	AK052077|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2	NM_001081252|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2	AK048685|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2
mm9_v1_chr5_-_34630913_34631012	1.94448	CAGCAGG	BC139050|Zfyve28|231125|zinc finger, FYVE domain containing 28	BC139051|Zfyve28|231125|zinc finger, FYVE domain containing 28	AK129414|Zfyve28|231125|zinc finger, FYVE domain containing 28	NM_001015039|Zfyve28|231125|zinc finger, FYVE domain containing 28	AK036334|Zfyve28|231125|zinc finger, FYVE domain containing 28
mm9_v1_chr11_+_98209978_98210141	1.93569	CAGCAGG	BC026568|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B	NM_144828|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B	BC011122|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B
mm9_v1_chr14_+_30834488_30834488	1.9177	CAGCAGG	BC039186|Chdh|218865|choline dehydrogenase	NM_172264|Chdh|218865|choline dehydrogenase
mm9_v1_chr8_-_97637241_97637241	1.9157	CAGCAGG	AK132895|Kifc3|16582|kinesin family member C3	NM_001145832|Kifc3|16582|kinesin family member C3
mm9_v1_chr9_+_37335673_37335728	1.91355	CAGCAGG	NM_027102|Esam|69524|endothelial cell-specific adhesion molecule	AK156399|Esam|69524|endothelial cell-specific adhesion molecule	BC019460|Esam|69524|endothelial cell-specific adhesion molecule	BC049249|Esam|69524|endothelial cell-specific adhesion molecule	AK009223|Esam|69524|endothelial cell-specific adhesion molecule	AF361882|Esam|69524|endothelial cell-specific adhesion molecule
mm9_v1_chr14_+_30835818_30835818	1.91144	CAGCAGG	AK030900|Chdh|218865|choline dehydrogenase	NM_175343|Chdh|218865|choline dehydrogenase
mm9_v1_chr12_+_101437735_101437896	1.87307	CAGCAGG	AK150978|Calm1|12313|calmodulin 1	AK151784|Calm1|12313|calmodulin 1	AK151992|Calm1|12313|calmodulin 1	AK159762|Calm1|12313|calmodulin 1	AK160057|Calm1|12313|calmodulin 1	AK160508|Calm1|12313|calmodulin 1	AK162314|Calm1|12313|calmodulin 1	AK169027|Calm1|12313|calmodulin 1	AK167353|Calm1|12313|calmodulin 1	M19381|Calm1|12313|calmodulin 1	AK004673|Calm1|12313|calmodulin 1	AK151923|Calm1|12313|calmodulin 1	AK152148|Calm1|12313|calmodulin 1	AK152850|Calm1|12313|calmodulin 1	AK153348|Calm1|12313|calmodulin 1	AK153546|Calm1|12313|calmodulin 1	AK168002|Calm1|12313|calmodulin 1	AK168803|Calm1|12313|calmodulin 1	AK169055|Calm1|12313|calmodulin 1	AK169640|Calm1|12313|calmodulin 1	AK153426|Calm1|12313|calmodulin 1	AK013695|Calm1|12313|calmodulin 1	AK088141|Calm1|12313|calmodulin 1	AK150288|Calm1|12313|calmodulin 1	AK151001|Calm1|12313|calmodulin 1	AK151552|Calm1|12313|calmodulin 1	AK152897|Calm1|12313|calmodulin 1	AK152719|Calm1|12313|calmodulin 1	AK166308|Calm1|12313|calmodulin 1	AK168663|Calm1|12313|calmodulin 1	AK152715|Calm1|12313|calmodulin 1	AK153004|Calm1|12313|calmodulin 1	BC054805|Calm1|12313|calmodulin 1	NM_009790|Calm1|12313|calmodulin 1	AK161302|Calm1|12313|calmodulin 1	AK168241|Calm1|12313|calmodulin 1	X61432|Calm1|12313|calmodulin 1
mm9_v1_chr1_+_133693944_133694029	1.872	CAGCAGG	AK128969|Pm20d1|212933|peptidase M20 domain containing 1	BC120725|Pm20d1|212933|peptidase M20 domain containing 1	BC125395|Pm20d1|212933|peptidase M20 domain containing 1	NM_178079|Pm20d1|212933|peptidase M20 domain containing 1	AK028883|Pm20d1|212933|peptidase M20 domain containing 1	AK143953|Pm20d1|212933|peptidase M20 domain containing 1
mm9_v1_chr11_-_72609306_72609347	1.87076	CAGCAGG	BC086682|Cyb5d2|192986|cytochrome b5 domain containing 2	NM_001024926|Cyb5d2|192986|cytochrome b5 domain containing 2	AK142515|Cyb5d2|192986|cytochrome b5 domain containing 2
mm9_v1_chr19_-_34715232_34715232	1.86874	CAGCAGG	AK153247|2010002M12Rik|112419|RIKEN cDNA 2010002M12 gene	NM_053217|2010002M12Rik|112419|RIKEN cDNA 2010002M12 gene
mm9_v1_chr11_-_107331865_107332065	1.86171	CAGCAGG	BC082333|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	BC108351|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AB077281|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK153625|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK171918|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK172137|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	NM_145823|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK171340|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1
mm9_v1_chr19_-_34952377_34952406	1.85175	CAGCAGG	AF200357|Pank1|75735|pantothenate kinase 1	AK050222|Pank1|75735|pantothenate kinase 1	NM_023792|Pank1|75735|pantothenate kinase 1
mm9_v1_chr18_+_34380575_34380671	1.84932	CAGCAGG	AK042021|Apc|11789|adenomatosis polyposis coli	AK080907|Apc|11789|adenomatosis polyposis coli	NM_007462|Apc|11789|adenomatosis polyposis coli	AK046280|Apc|11789|adenomatosis polyposis coli	AK045053|Apc|11789|adenomatosis polyposis coli
mm9_v1_chrX_-_50946805_50946943	1.8301	CAGCAGG	BC003436|Cxx1a|66158|CAAX box 1 homolog A (human)	AK002323|Cxx1a|66158|CAAX box 1 homolog A (human)	NM_024170|Cxx1a|66158|CAAX box 1 homolog A (human)
mm9_v1_chr10_-_80119815_80119815	1.82656	CAGCAGG	NM_145361|Btbd2|208198|BTB (POZ) domain containing 2
mm9_v1_chr19_+_29038321_29038434	1.82637	CAGCAGG	AK016572|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2	NM_028922|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2	AK041581|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2
mm9_v1_chr10_+_5277477_5277627	1.81943	CAGCAGG	BC054456|Syne1|64009|synaptic nuclear envelope 1	NM_022027|Syne1|64009|synaptic nuclear envelope 1	AK036828|Syne1|64009|synaptic nuclear envelope 1	BC110428|Syne1|64009|synaptic nuclear envelope 1	AF281869|Syne1|64009|synaptic nuclear envelope 1	AK164813|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr4_-_150418704_150418793	1.8146	CAGCAGG	NM_011067|Per3|18628|period homolog 3 (Drosophila)	AK166514|Per3|18628|period homolog 3 (Drosophila)
mm9_v1_chr19_+_42322063_42322067	1.80806	CAGCAGG	AK016850|Golga7b|71146|golgi autoantigen, golgin subfamily a, 7B	NM_001141983|Golga7b|71146|golgi autoantigen, golgin subfamily a, 7B
mm9_v1_chr17_-_48572043_48572062	1.80438	CAGCAGG	AF161699|Apobec2|11811|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2	NM_009694|Apobec2|11811|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm9_v1_chr2_-_152777135_152777317	1.8043	CAGCAGG	BC116841|Dusp15|252864|dual specificity phosphatase-like 15	BC116843|Dusp15|252864|dual specificity phosphatase-like 15	BC144711|Dusp15|252864|dual specificity phosphatase-like 15	AF357887|Dusp15|252864|dual specificity phosphatase-like 15	NM_145744|Dusp15|252864|dual specificity phosphatase-like 15	NM_001159376|Dusp15|252864|dual specificity phosphatase-like 15
mm9_v1_chr15_+_85566122_85566257	1.79836	CAGCAGG	AK035676|Ppara|19013|peroxisome proliferator activated receptor alpha	NM_011144|Ppara|19013|peroxisome proliferator activated receptor alpha	BC016892|Ppara|19013|peroxisome proliferator activated receptor alpha
mm9_v1_chr9_+_45820886_45820906	1.79771	CAGCAGG	NM_027498|Sik3|70661|SIK family kinase 3
mm9_v1_chr12_-_36769054_36769127	1.79523	CAGCAGG	BC018317|Tspan13|66109|tetraspanin 13	NM_025359|Tspan13|66109|tetraspanin 13	AK158761|Tspan13|66109|tetraspanin 13	AK167979|Tspan13|66109|tetraspanin 13	AK012571|Tspan13|66109|tetraspanin 13	AK090217|Tspan13|66109|tetraspanin 13	AK090322|Tspan13|66109|tetraspanin 13	AK165768|Tspan13|66109|tetraspanin 13	AK167495|Tspan13|66109|tetraspanin 13
mm9_v1_chr4_+_115894518_115894602	1.7891	CAGCAGG	BC053102|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	NM_181585|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	AK031936|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm9_v1_chr9_-_21875784_21875847	1.78471	CAGCAGG	AY072705|Zfp653|319601|zinc finger protein 653	BC038037|Zfp653|319601|zinc finger protein 653	NM_177318|Zfp653|319601|zinc finger protein 653	AK171735|Zfp653|319601|zinc finger protein 653
mm9_v1_chr12_+_75098739_75098790	1.77694	CAGCAGG	AK137129|Syt16|238266|synaptotagmin XVI	AK032606|Syt16|238266|synaptotagmin XVI	NM_172804|Syt16|238266|synaptotagmin XVI
mm9_v1_chrX_+_71019741_71019765	1.77506	CAGCAGG	AK004696|Srpk3|56504|serine/arginine-rich protein specific kinase 3	AF043288|Srpk3|56504|serine/arginine-rich protein specific kinase 3	NM_019684|Srpk3|56504|serine/arginine-rich protein specific kinase 3	BC120883|Srpk3|56504|serine/arginine-rich protein specific kinase 3	BC120884|Srpk3|56504|serine/arginine-rich protein specific kinase 3
mm9_v1_chr15_-_81560309_81560370	1.77188	CAGCAGG	AK035571|Rangap1|19387|RAN GTPase activating protein 1	AK042930|Rangap1|19387|RAN GTPase activating protein 1	AK133905|Rangap1|19387|RAN GTPase activating protein 1	AK159525|Rangap1|19387|RAN GTPase activating protein 1	BC066213|Rangap1|19387|RAN GTPase activating protein 1	U08110|Rangap1|19387|RAN GTPase activating protein 1	NM_001146174|Rangap1|19387|RAN GTPase activating protein 1	NM_011241|Rangap1|19387|RAN GTPase activating protein 1
mm9_v1_chr14_-_70132309_70132386	1.76717	CAGCAGG	BC024115|Chmp7|105513|CHMP family, member 7	BC033365|Chmp7|105513|CHMP family, member 7	NM_134078|Chmp7|105513|CHMP family, member 7
mm9_v1_chr3_-_84024766_84024812	1.7635	CAGCAGG	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr2_-_32286633_32286688	1.76037	CAGCAGG	BC066998|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	NM_001164358|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm9_v1_chr4_+_118781336_118781380	1.75778	CAGCAGG	NM_011400|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	M23384|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	BC055340|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1
mm9_v1_chr5_+_73872293_73872293	1.75537	CAGCAGG	AK076991|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_001190734|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr5_+_145306751_145306864	1.74104	CAGCAGG	AK134806|Nptx2|53324|neuronal pentraxin 2	NM_016789|Nptx2|53324|neuronal pentraxin 2	BC026054|Nptx2|53324|neuronal pentraxin 2	AF049124|Nptx2|53324|neuronal pentraxin 2
mm9_v1_chr12_-_35213738_35213753	1.73264	CAGCAGG	BC098187|Hdac9|79221|histone deacetylase 9	NM_024124|Hdac9|79221|histone deacetylase 9
mm9_v1_chr11_+_61890494_61890602	1.72453	CAGCAGG	AK050982|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1	AK220465|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1	NM_001029936|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1
mm9_v1_chr10_+_122115755_122115904	1.72438	CAGCAGG	AK043121|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	NM_001110218|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	NM_176919|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK040207|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK077422|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK134804|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK051434|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK220260|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)
mm9_v1_chr18_-_47528483_47528523	1.72258	CAGCAGG	BC059238|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	AK042751|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	NM_018744|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	AK082711|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm9_v1_chrX_-_73088288_73088302	1.72254	CAGCAGG	AK146087|Pls3|102866|plastin 3 (T-isoform)	NM_001166454|Pls3|102866|plastin 3 (T-isoform)
mm9_v1_chr9_+_54434140_54434327	1.71949	CAGCAGG	AK158646|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK159051|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK117103|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK152353|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK159666|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK160054|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK150618|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK164038|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168149|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK167822|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK151304|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK153459|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168049|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK010065|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK032787|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK047951|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168034|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK084523|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	BC049956|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	NM_029573|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK169152|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	BC034273|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha
mm9_v1_chr9_-_48644030_48644051	1.7158	CAGCAGG	AK040211|Zbtb16|235320|zinc finger and BTB domain containing 16	AK142947|Zbtb16|235320|zinc finger and BTB domain containing 16	NM_001033324|Zbtb16|235320|zinc finger and BTB domain containing 16
mm9_v1_chr14_-_55400722_55400814	1.71441	CAGCAGG	BC059004|Slc7a8|50934|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	NM_016972|Slc7a8|50934|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	AK044620|Slc7a8|50934|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8
mm9_v1_chr19_+_53751795_53751795	1.71351	CAGCAGG	AK142175|Rbm20|73713|RNA binding motif protein 20	NM_001170847|Rbm20|73713|RNA binding motif protein 20
mm9_v1_chr9_-_123587923_123587963	1.71017	CAGCAGG	AJ964961|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	BC118933|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	NM_139142|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	AK160468|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	AK043297|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	AK080979|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	AK140445|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	AJ428067|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A
mm9_v1_chr1_-_17087821_17087878	1.70552	CAGCAGG	AB024445|Jph1|57339|junctophilin 1	NM_020604|Jph1|57339|junctophilin 1
mm9_v1_chr10_+_5151833_5151833	1.70122	CAGCAGG	AK041626|Syne1|64009|synaptic nuclear envelope 1	NM_001079686|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr15_+_87455659_87455659	1.70109	CAGCAGG	AY325124|Fam19a5|106014|family with sequence similarity 19, member A5	BC015306|Fam19a5|106014|family with sequence similarity 19, member A5	NM_134096|Fam19a5|106014|family with sequence similarity 19, member A5
mm9_v1_chr7_+_38968235_38968304	1.689	CAGCAGG	NM_001085385|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	BC019834|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene
mm9_v1_chr3_-_88893885_88893966	1.68639	CAGCAGG	AK170210|Rusc1|72296|RUN and SH3 domain containing 1	NM_001083808|Rusc1|72296|RUN and SH3 domain containing 1	AK170012|Rusc1|72296|RUN and SH3 domain containing 1
mm9_v1_chr1_-_134036041_134036303	1.685	CAGCAGG	AK171569|Cdk18|18557|cyclin-dependent kinase 18	BC119617|Cdk18|18557|cyclin-dependent kinase 18	BC119618|Cdk18|18557|cyclin-dependent kinase 18	AK004998|Cdk18|18557|cyclin-dependent kinase 18	X69026|Cdk18|18557|cyclin-dependent kinase 18	NM_008795|Cdk18|18557|cyclin-dependent kinase 18
mm9_v1_chr1_+_135142673_135142702	1.67861	CAGCAGG	NM_001160268|Plekha6|240753|pleckstrin homology domain containing, family A member 6	NM_182930|Plekha6|240753|pleckstrin homology domain containing, family A member 6	BC054547|Plekha6|240753|pleckstrin homology domain containing, family A member 6	AK173074|Plekha6|240753|pleckstrin homology domain containing, family A member 6
mm9_v1_chr1_+_187278726_187278919	1.67677	CAGCAGG	AK053537|Slc30a10|226781|solute carrier family 30, member 10	NM_001033286|Slc30a10|226781|solute carrier family 30, member 10	BC054548|Slc30a10|226781|solute carrier family 30, member 10	AK136932|Slc30a10|226781|solute carrier family 30, member 10
mm9_v1_chr5_-_74038829_74039027	1.66853	CAGCAGG	BC052349|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AK017781|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AK169403|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	NM_011890|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AB024921|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AK014381|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AK132306|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)
mm9_v1_chr9_-_44773594_44773682	1.66696	CAGCAGG	BC025043|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028721|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC006649|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC021406|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028850|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK172893|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	NM_145400|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)
mm9_v1_chr7_+_132851389_132851439	1.65597	CAGCAGG	NM_001081022|D430042O09Rik|233865|RIKEN cDNA D430042O09 gene	BC157963|D430042O09Rik|233865|RIKEN cDNA D430042O09 gene	BC158019|D430042O09Rik|233865|RIKEN cDNA D430042O09 gene
mm9_v1_chr12_+_109660951_109661025	1.64814	CAGCAGG	NM_001043335|Eml1|68519|echinoderm microtubule associated protein like 1
mm9_v1_chr6_-_72566691_72566744	1.64612	CAGCAGG	CT010269|Tgoln1|22134|trans-golgi network protein	AK161242|Tgoln1|22134|trans-golgi network protein	AK145212|Tgoln2|22135|trans-golgi network protein 2	BC009143|Tgoln1|22134|trans-golgi network protein	BC141218|Tgoln1|22134|trans-golgi network protein	BC145542|Tgoln1|22134|trans-golgi network protein	AK133559|Tgoln1|22134|trans-golgi network protein	D50031|Tgoln1|22134|trans-golgi network protein	D50032|Tgoln2|22135|trans-golgi network protein 2	NM_009444|Tgoln2|22135|trans-golgi network protein 2	AK041302|Tgoln1|22134|trans-golgi network protein	AK162574|Tgoln1|22134|trans-golgi network protein
mm9_v1_chr15_+_41278949_41279049	1.63383	CAGCAGG	NM_001130166|Oxr1|170719|oxidation resistance 1	AK158703|Oxr1|170719|oxidation resistance 1
mm9_v1_chr6_-_12699189_12699252	1.63243	CAGCAGG	NM_001164805|Thsd7a|330267|thrombospondin, type I, domain containing 7A
mm9_v1_chr13_+_55050729_55050861	1.63083	CAGCAGG	BC058084|Unc5a|107448|unc-5 homolog A (C. elegans)	AJ487852|Unc5a|107448|unc-5 homolog A (C. elegans)	NM_153131|Unc5a|107448|unc-5 homolog A (C. elegans)
mm9_v1_chrX_-_71126088_71126172	1.62589	CAGCAGG	BC056988|L1cam|16728|L1 cell adhesion molecule	AK139407|L1cam|16728|L1 cell adhesion molecule	NM_008478|L1cam|16728|L1 cell adhesion molecule
mm9_v1_chr2_-_31701432_31701524	1.62521	CAGCAGG	AK046338|Fibcd1|98970|fibrinogen C domain containing 1	AK084379|Fibcd1|98970|fibrinogen C domain containing 1	BC060634|Fibcd1|98970|fibrinogen C domain containing 1	NM_178887|Fibcd1|98970|fibrinogen C domain containing 1
mm9_v1_chr15_+_41620926_41621060	1.62031	CAGCAGG	AK040881|Oxr1|170719|oxidation resistance 1	AF324899|Oxr1|170719|oxidation resistance 1	AF333985|Oxr1|170719|oxidation resistance 1	NM_001130163|Oxr1|170719|oxidation resistance 1	NM_130885|Oxr1|170719|oxidation resistance 1
mm9_v1_chrX_+_160876032_160876036	1.61435	CAGCAGG	AK004396|Asb11|68854|ankyrin repeat and SOCS box-containing 11	NM_026853|Asb11|68854|ankyrin repeat and SOCS box-containing 11	BC064047|Asb11|68854|ankyrin repeat and SOCS box-containing 11
mm9_v1_chr11_-_76322920_76322935	1.6034	CAGCAGG	BC058708|Abr|109934|active BCR-related gene	NM_198018|Abr|109934|active BCR-related gene
mm9_v1_chr6_-_124414668_124414803	1.60141	CAGCAGG	AJ278486|Clstn3|232370|calsyntenin 3	BC055054|Clstn3|232370|calsyntenin 3	AK032336|Clstn3|232370|calsyntenin 3	NM_153508|Clstn3|232370|calsyntenin 3
mm9_v1_chr2_+_181100083_181100251	1.59895	CAGCAGG	AK159801|Zgpat|229007|zinc finger, CCCH-type with G patch domain	NM_001048148|Zgpat|229007|zinc finger, CCCH-type with G patch domain	AK049764|Zgpat|229007|zinc finger, CCCH-type with G patch domain	BC021513|Zgpat|229007|zinc finger, CCCH-type with G patch domain	BC004646|Zgpat|229007|zinc finger, CCCH-type with G patch domain	BC027218|Zgpat|229007|zinc finger, CCCH-type with G patch domain	AK052236|Zgpat|229007|zinc finger, CCCH-type with G patch domain
mm9_v1_chr4_+_155367019_155367119	1.598	CAGCAGG	D50461|Sdf4|20318|stromal cell derived factor 4	BC068152|Sdf4|20318|stromal cell derived factor 4	NM_011341|Sdf4|20318|stromal cell derived factor 4	AK090319|Sdf4|20318|stromal cell derived factor 4	U45977|Sdf4|20318|stromal cell derived factor 4
mm9_v1_chrX_+_90900201_90900217	1.59638	CAGCAGG	AK149304|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189950|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	NM_177546|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK053577|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chr3_-_88897207_88897284	1.59615	CAGCAGG	AK039664|Rusc1|72296|RUN and SH3 domain containing 1	BC056360|Rusc1|72296|RUN and SH3 domain containing 1	AK042689|Rusc1|72296|RUN and SH3 domain containing 1	NM_001083807|Rusc1|72296|RUN and SH3 domain containing 1	NM_028188|Rusc1|72296|RUN and SH3 domain containing 1
mm9_v1_chr8_-_27104573_27104612	1.59564	CAGCAGG	BC027296|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK015374|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK032677|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK043620|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK170994|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	NM_029037|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK160873|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK036348|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK138952|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene
mm9_v1_chr9_+_32031833_32031859	1.59133	CAGCAGG	NM_177379|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr2_-_7002344_7002370	1.58411	CAGCAGG	NM_001110229|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110230|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160292|Celf2|14007|CUGBP, Elav-like family member 2	AK159996|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr14_+_76888242_76888347	1.58401	CAGCAGG	NM_001177751|Tsc22d1|21807|TSC22 domain family, member 1	AK136211|Tsc22d1|21807|TSC22 domain family, member 1
mm9_v1_chr9_-_42280256_42280323	1.58085	CAGCAGG	BC139386|Tbcel|272589|tubulin folding cofactor E-like	BC139387|Tbcel|272589|tubulin folding cofactor E-like	AK077017|Tbcel|272589|tubulin folding cofactor E-like	NM_173038|Tbcel|272589|tubulin folding cofactor E-like	AK084854|Tbcel|272589|tubulin folding cofactor E-like
mm9_v1_chr1_-_39707919_39708026	1.57031	CAGCAGG	BC116790|Creg2|263764|cellular repressor of E1A-stimulated genes 2	BC116792|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK044192|Creg2|263764|cellular repressor of E1A-stimulated genes 2	NM_170597|Creg2|263764|cellular repressor of E1A-stimulated genes 2
mm9_v1_chr8_+_32222291_32222336	1.56548	CAGCAGG	AK077856|Rnf122|68867|ring finger protein 122	AK171823|Rnf122|68867|ring finger protein 122	AK136206|Rnf122|68867|ring finger protein 122	AK162034|Rnf122|68867|ring finger protein 122	BC038399|Rnf122|68867|ring finger protein 122	NM_175136|Rnf122|68867|ring finger protein 122	AK085376|Rnf122|68867|ring finger protein 122
mm9_v1_chr2_-_25316553_25316613	1.55721	CAGCAGG	BC029214|BC029214|227622|cDNA sequence BC029214	NM_153557|BC029214|227622|cDNA sequence BC029214
mm9_v1_chr7_-_88974235_88974382	1.55265	CAGCAGG	BC072618|Btbd1|83962|BTB (POZ) domain containing 1	NM_146193|Btbd1|83962|BTB (POZ) domain containing 1	BC087937|Btbd1|83962|BTB (POZ) domain containing 1	AK088345|Btbd1|83962|BTB (POZ) domain containing 1
mm9_v1_chr7_-_30836383_30836414	1.5508	CAGCAGG	AK030632|Zfp14|243906|zinc finger protein 14	AK045631|Zfp14|243906|zinc finger protein 14	AK028663|Zfp14|243906|zinc finger protein 14	BC066057|Zfp14|243906|zinc finger protein 14	AK032214|Zfp14|243906|zinc finger protein 14	NM_011748|Zfp14|243906|zinc finger protein 14	NM_178733|Zfp14|243906|zinc finger protein 14
mm9_v1_chr8_-_63433528_63433596	1.54957	CAGCAGG	BC057133|Clcn3|12725|chloride channel 3	NM_173876|Clcn3|12725|chloride channel 3
mm9_v1_chr5_+_73882264_73882364	1.53378	CAGCAGG	NM_001190733|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_178896|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	AK033559|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137627|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137628|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC144794|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC060213|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC108346|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr4_-_134941539_134941586	1.52791	CAGCAGG	AK076488|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	AK014757|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	NM_001168498|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	NM_181047|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene
mm9_v1_chr7_-_147340532_147340650	1.51114	CAGCAGG	BC056484|Sprn|212518|shadow of prion protein	NM_183147|Sprn|212518|shadow of prion protein	AK049995|Sprn|212518|shadow of prion protein
mm9_v1_chr9_-_83040061_83040223	1.50852	CAGCAGG	AK002970|Hmgn3|94353|high mobility group nucleosomal binding domain 3	BC005693|Hmgn3|94353|high mobility group nucleosomal binding domain 3	AK003272|Hmgn3|94353|high mobility group nucleosomal binding domain 3	AK153223|Hmgn3|94353|high mobility group nucleosomal binding domain 3	NM_026122|Hmgn3|94353|high mobility group nucleosomal binding domain 3	NM_175074|Hmgn3|94353|high mobility group nucleosomal binding domain 3
mm9_v1_chr11_-_87800086_87800086	1.50132	CAGCAGG	NM_001168472|Dynll2|68097|dynein light chain LC8-type 2
mm9_v1_chr4_-_134954104_134954141	1.4961	CAGCAGG	BC037722|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	BC005730|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	BC039748|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	AK167453|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	NM_001168500|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	NM_145555|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene
mm9_v1_chr11_-_63892874_63892978	1.49179	CAGCAGG	AK213695|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	BC038046|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	BC018301|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK149999|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK171661|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK010385|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK154668|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK156865|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK172718|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	NM_178379|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)
mm9_v1_chr15_+_85565935_85565993	1.48901	CAGCAGG	AK081709|Ppara|19013|peroxisome proliferator activated receptor alpha	NM_001113418|Ppara|19013|peroxisome proliferator activated receptor alpha
mm9_v1_chr2_+_144419797_144419818	1.4823	CAGCAGG	AK002610|Gm561|228715|predicted gene 561	NM_001033297|Gm561|228715|predicted gene 561	BC147042|Gm561|228715|predicted gene 561	BC147043|Gm561|228715|predicted gene 561	AK010324|Gm561|228715|predicted gene 561
mm9_v1_chr9_-_110310638_110310737	1.47265	CAGCAGG	NM_001081043|Ptpn23|104831|protein tyrosine phosphatase, non-receptor type 23
mm9_v1_chr17_-_26017802_26017802	1.46079	CAGCAGG	NM_001100454|Wfikkn1|215001|WAP, FS, Ig, KU, and NTR-containing protein 1
mm9_v1_chr10_-_76424664_76424695	1.46029	CAGCAGG	NM_021568|Pcbp3|59093|poly(rC) binding protein 3
mm9_v1_chr4_-_107973683_107973743	1.45984	CAGCAGG	AK166278|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK148335|Zyg11b|414872|zyg-ll homolog B (C. elegans)	NM_001033634|Zyg11b|414872|zyg-ll homolog B (C. elegans)
mm9_v1_chr17_+_24987499_24987611	1.45459	CAGCAGG	AK150557|Hagh|14651|hydroxyacyl glutathione hydrolase	AK151231|Hagh|14651|hydroxyacyl glutathione hydrolase	AK152742|Hagh|14651|hydroxyacyl glutathione hydrolase	AK165777|Hagh|14651|hydroxyacyl glutathione hydrolase	BC019817|Hagh|14651|hydroxyacyl glutathione hydrolase	NM_001159626|Hagh|14651|hydroxyacyl glutathione hydrolase
mm9_v1_chr15_-_63891810_63892112	1.45424	CAGCAGG	AK075613|Fam49b|223601|family with sequence similarity 49, member B	AK043641|Fam49b|223601|family with sequence similarity 49, member B	AK028062|Fam49b|223601|family with sequence similarity 49, member B	NM_144846|Fam49b|223601|family with sequence similarity 49, member B
mm9_v1_chr17_+_24987429_24987437	1.44974	CAGCAGG	NM_024284|Hagh|14651|hydroxyacyl glutathione hydrolase
mm9_v1_chr4_-_115817140_115817220	1.44436	CAGCAGG	BC147058|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	BC147059|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	BC147737|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	BC147750|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	AK013564|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	NM_026547|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene
mm9_v1_chr8_-_23916037_23916141	1.44183	CAGCAGG	BC030484|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	BC027301|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK017991|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK134634|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK082988|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK080668|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK081220|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AY039763|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK077365|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	NM_001122820|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	NM_029505|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit
mm9_v1_chr1_+_168184269_168184413	1.43802	CAGCAGG	NM_001164528|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024494|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024495|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024496|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024497|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024498|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024499|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024500|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024501|Ildr2|100039795|immunoglobulin-like domain containing receptor 2
mm9_v1_chr7_+_133415982_133416132	1.43617	CAGCAGG	BC031759|Sbk1|104175|SH3-binding kinase 1	NM_145587|Sbk1|104175|SH3-binding kinase 1
mm9_v1_chr6_-_113145321_113145377	1.43167	CAGCAGG	AK220449|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	BC085130|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	AK046437|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	NM_177763|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4
mm9_v1_chr18_+_61085283_61085301	1.42377	CAGCAGG	AK083245|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK163179|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	NM_177407|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK122410|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	X14836|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr15_-_74502981_74503002	1.42276	CAGCAGG	AF162777|Arc|11838|activity regulated cytoskeletal-associated protein	BC023127|Arc|11838|activity regulated cytoskeletal-associated protein	AK170446|Arc|11838|activity regulated cytoskeletal-associated protein	AK157822|Arc|11838|activity regulated cytoskeletal-associated protein	NM_018790|Arc|11838|activity regulated cytoskeletal-associated protein
mm9_v1_chr5_+_30431701_30431755	1.40703	CAGCAGG	NM_001167879|Fam59b|242915|family with sequence similarity 59, member B
mm9_v1_chr14_-_56503083_56503107	1.39962	CAGCAGG	BC065108|Cbln3|56410|cerebellin 3 precursor protein	NM_019820|Cbln3|56410|cerebellin 3 precursor protein
mm9_v1_chr6_-_52859613_52859613	1.3979	CAGCAGG	BC048577|Jazf1|231986|JAZF zinc finger 1	NM_001168277|Jazf1|231986|JAZF zinc finger 1
mm9_v1_chr11_-_76391228_76391228	1.39649	CAGCAGG	NM_198894|Abr|109934|active BCR-related gene
mm9_v1_chr9_+_121628258_121628322	1.39591	CAGCAGG	AK163916|Nktr|18087|natural killer tumor recognition sequence	L04289|Nktr|18087|natural killer tumor recognition sequence	NM_010918|Nktr|18087|natural killer tumor recognition sequence
mm9_v1_chr14_+_76815627_76815627	1.39521	CAGCAGG	BC058660|Tsc22d1|21807|TSC22 domain family, member 1	NM_207652|Tsc22d1|21807|TSC22 domain family, member 1
mm9_v1_chr11_-_119089774_119089812	1.39431	CAGCAGG	BC057634|Tbc1d16|207592|TBC1 domain family, member 16	AK047555|Tbc1d16|207592|TBC1 domain family, member 16	NM_172443|Tbc1d16|207592|TBC1 domain family, member 16
mm9_v1_chr3_+_36050001_36050053	1.38643	CAGCAGG	NM_001101478|D3Ertd254e|241944|DNA segment, Chr 3, ERATO Doi 254, expressed	AK153849|D3Ertd254e|241944|DNA segment, Chr 3, ERATO Doi 254, expressed
mm9_v1_chr2_-_165151935_165152001	1.38401	CAGCAGG	AK047040|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK050823|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK053574|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK032033|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	BC023954|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK038097|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK045428|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK129023|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	NM_080287|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	NM_207706|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)
mm9_v1_chr19_+_12040311_12040373	1.37934	CAGCAGG	NM_001033174|Osbp|76303|oxysterol binding protein
mm9_v1_chrX_-_147451785_147451868	1.37192	CAGCAGG	BC079653|Gnl3l|237107|guanine nucleotide binding protein-like 3 (nucleolar)-like	BC057033|Gnl3l|237107|guanine nucleotide binding protein-like 3 (nucleolar)-like	BC020354|Gnl3l|237107|guanine nucleotide binding protein-like 3 (nucleolar)-like	NM_001168600|Gnl3l|237107|guanine nucleotide binding protein-like 3 (nucleolar)-like	NM_198110|Gnl3l|237107|guanine nucleotide binding protein-like 3 (nucleolar)-like
mm9_v1_chr17_-_15512773_15512786	1.36908	CAGCAGG	NM_007865|Dll1|13388|delta-like 1 (Drosophila)
mm9_v1_chr11_-_3309227_3309253	1.36847	CAGCAGG	NM_010718|Limk2|16886|LIM motif-containing protein kinase 2
mm9_v1_chr7_+_53289065_53289193	1.36302	CAGCAGG	NM_153057|Nomo1|211548|nodal modulator 1	AK035957|Nomo1|211548|nodal modulator 1	AK142338|Nomo1|211548|nodal modulator 1	AK030584|Nomo1|211548|nodal modulator 1	AK150107|Nomo1|211548|nodal modulator 1	BC072630|Nomo1|211548|nodal modulator 1	AK082495|Nomo1|211548|nodal modulator 1
mm9_v1_chr1_+_138027943_138028013	1.36207	CAGCAGG	NM_001039472|Kif21b|16565|kinesin family member 21B
mm9_v1_chr8_-_72644704_72644742	1.35988	CAGCAGG	X84727|Ncan|13004|neurocan	BC065118|Ncan|13004|neurocan	NM_007789|Ncan|13004|neurocan
mm9_v1_chr17_+_7374435_7374635	1.35686	CAGCAGG	BC055331|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	NM_011299|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	AK044173|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	BC043064|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	BC056946|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	BC051079|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	AK019881|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	AJ131021|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2
mm9_v1_chr15_+_88692581_88692634	1.34392	CAGCAGG	AK168014|Pim3|223775|proviral integration site 3	BC017621|Pim3|223775|proviral integration site 3	NM_145478|Pim3|223775|proviral integration site 3
mm9_v1_chr7_-_26262552_26262648	1.34232	CAGCAGG	AB236328|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	AB236329|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	AB236330|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	AB236331|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	AB236332|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	X53084|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	X67280|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	X67281|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	X67283|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	M96934|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	M96935|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	BC016891|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	AK085749|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	M77196|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	NM_001039185|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	NM_001039186|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	NM_001039187|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	NM_011926|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1
mm9_v1_chr10_+_74779687_74779852	1.34222	CAGCAGG	NM_009630|Adora2a|11540|adenosine A2a receptor
mm9_v1_chr3_-_95032589_95032623	1.33291	CAGCAGG	AK152708|Mllt11|56772|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11	NM_019914|Mllt11|56772|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11
mm9_v1_chr8_+_14911653_14911743	1.33188	CAGCAGG	AK147669|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	AK051721|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	NM_001037736|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	NM_172751|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	AK054038|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	AK220332|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	BC066074|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10
mm9_v1_chr4_-_119165183_119165252	1.33098	CAGCAGG	BC057371|Rimkla|194237|ribosomal modification protein rimK-like family member A	AK163360|Rimkla|194237|ribosomal modification protein rimK-like family member A	AK047164|Rimkla|194237|ribosomal modification protein rimK-like family member A	NM_177572|Rimkla|194237|ribosomal modification protein rimK-like family member A
mm9_v1_chr6_-_72566993_72566993	1.32913	CAGCAGG	AK076586|Tgoln1|22134|trans-golgi network protein	NM_009443|Tgoln1|22134|trans-golgi network protein
mm9_v1_chr7_+_107855215_107855319	1.31969	CAGCAGG	BC079886|Fam168a|319604|family with sequence similarity 168, member A	NM_178764|Fam168a|319604|family with sequence similarity 168, member A	AK043356|Fam168a|319604|family with sequence similarity 168, member A	AK047153|Fam168a|319604|family with sequence similarity 168, member A	AK048559|Fam168a|319604|family with sequence similarity 168, member A	AK051453|Fam168a|319604|family with sequence similarity 168, member A	AK084931|Fam168a|319604|family with sequence similarity 168, member A	AK137424|Fam168a|319604|family with sequence similarity 168, member A
mm9_v1_chr12_+_87165889_87165903	1.31839	CAGCAGG	NM_001081423|Ttll5|320244|tubulin tyrosine ligase-like family, member 5
mm9_v1_chr2_+_150612469_150612531	1.31635	CAGCAGG	AK169052|Pygb|110078|brain glycogen phosphorylase	AK147763|Pygb|110078|brain glycogen phosphorylase	AK032769|Pygb|110078|brain glycogen phosphorylase	AK169631|Pygb|110078|brain glycogen phosphorylase	AK134667|Pygb|110078|brain glycogen phosphorylase	AK168381|Pygb|110078|brain glycogen phosphorylase	AK142716|Pygb|110078|brain glycogen phosphorylase	BC031457|Pygb|110078|brain glycogen phosphorylase	BC035283|Pygb|110078|brain glycogen phosphorylase	NM_153781|Pygb|110078|brain glycogen phosphorylase
mm9_v1_chr7_-_27963760_27963951	1.30987	CAGCAGG	AB232592|Rab4b|19342|RAB4B, member RAS oncogene family	AK140513|Rab4b|19342|RAB4B, member RAS oncogene family	BC007147|Rab4b|19342|RAB4B, member RAS oncogene family	AF408432|Rab4b|19342|RAB4B, member RAS oncogene family	BC096654|Rab4b|19342|RAB4B, member RAS oncogene family	AK005314|Rab4b|19342|RAB4B, member RAS oncogene family	NM_029391|Rab4b|19342|RAB4B, member RAS oncogene family	AK170552|Rab4b|19342|RAB4B, member RAS oncogene family
mm9_v1_chr11_-_106474237_106474312	1.2899	CAGCAGG	AK129434|Tex2|21763|testis expressed gene 2	NM_198292|Tex2|21763|testis expressed gene 2	AK168397|Tex2|21763|testis expressed gene 2
mm9_v1_chr19_-_19075535_19075606	1.2876	CAGCAGG	DQ779924|Rorb|225998|RAR-related orphan receptor beta	BC024768|Rorb|225998|RAR-related orphan receptor beta	AK044421|Rorb|225998|RAR-related orphan receptor beta	BC024842|Rorb|225998|RAR-related orphan receptor beta	NM_146095|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr19_+_56796861_56797043	1.28654	CAGCAGG	NM_007419|Adrb1|11554|adrenergic receptor, beta 1	AK018378|Adrb1|11554|adrenergic receptor, beta 1
mm9_v1_chr1_-_182126032_182126150	1.28445	CAGCAGG	AK004791|Adck3|67426|aarF domain containing kinase 3	AK014605|Adck3|67426|aarF domain containing kinase 3	BC030937|Adck3|67426|aarF domain containing kinase 3	NM_023341|Adck3|67426|aarF domain containing kinase 3
mm9_v1_chrX_-_7318412_7318449	1.27579	CAGCAGG	BC053918|Ccdc120|54648|coiled-coil domain containing 120	NM_207202|Ccdc120|54648|coiled-coil domain containing 120
mm9_v1_chr2_+_93027704_93027759	1.27094	CAGCAGG	AK142316|Trp53i11|277414|transformation related protein 53 inducible protein 11	BC098206|Trp53i11|277414|transformation related protein 53 inducible protein 11	NM_001025246|Trp53i11|277414|transformation related protein 53 inducible protein 11
mm9_v1_chr7_+_107520742_107520781	1.26222	CAGCAGG	NM_001017985|C2cd3|277939|C2 calcium-dependent domain containing 3	AK171263|C2cd3|277939|C2 calcium-dependent domain containing 3
mm9_v1_chr2_+_32455168_32455228	1.26193	CAGCAGG	NM_001025311|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
mm9_v1_chr12_+_104770650_104770779	1.26168	CAGCAGG	AK029499|Ppp4r4|74521|protein phosphatase 4, regulatory subunit 4	NM_028980|Ppp4r4|74521|protein phosphatase 4, regulatory subunit 4	BC111887|Ppp4r4|74521|protein phosphatase 4, regulatory subunit 4	BC113754|Ppp4r4|74521|protein phosphatase 4, regulatory subunit 4
mm9_v1_chr15_+_102807462_102807462	1.25556	CAGCAGG	BC050838|Hoxc9|15427|homeobox C9	NM_008272|Hoxc9|15427|homeobox C9
mm9_v1_chr7_-_116651647_116651647	1.25085	CAGCAGG	AY572454|Trim66|330627|tripartite motif-containing 66	AY572455|Trim66|330627|tripartite motif-containing 66	NM_001170912|Trim66|330627|tripartite motif-containing 66	NM_181853|Trim66|330627|tripartite motif-containing 66
mm9_v1_chr8_-_81818792_81818859	1.24823	CAGCAGG	AK050255|Mmaa|109136|methylmalonic aciduria (cobalamin deficiency) type A	NM_133823|Mmaa|109136|methylmalonic aciduria (cobalamin deficiency) type A
mm9_v1_chr2_+_181099632_181099635	1.24168	CAGCAGG	AK041491|Zgpat|229007|zinc finger, CCCH-type with G patch domain	NM_144894|Zgpat|229007|zinc finger, CCCH-type with G patch domain
mm9_v1_chr17_+_56109884_56109905	1.24119	CAGCAGG	AK142491|Shd|20420|src homology 2 domain-containing transforming protein D	NM_001159523|Shd|20420|src homology 2 domain-containing transforming protein D	NM_009168|Shd|20420|src homology 2 domain-containing transforming protein D	AB018423|Shd|20420|src homology 2 domain-containing transforming protein D
mm9_v1_chr2_+_84518544_84518790	1.23104	CAGCAGG	NM_025885|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK010552|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK005399|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK168787|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK160579|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC082559|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC055404|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC044207|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC044302|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK209282|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)
mm9_v1_chr4_-_149112082_149112163	1.22723	CAGCAGG	AK079157|Tmem201|230917|transmembrane protein 201	AK078532|Tmem201|230917|transmembrane protein 201	AK039221|Tmem201|230917|transmembrane protein 201	BC072645|Tmem201|230917|transmembrane protein 201	NM_001025106|Tmem201|230917|transmembrane protein 201	NM_177672|Tmem201|230917|transmembrane protein 201	AK086543|Tmem201|230917|transmembrane protein 201	AK153631|Tmem201|230917|transmembrane protein 201
mm9_v1_chrX_+_90920450_90920749	1.22433	CAGCAGG	NM_211138|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	BC048917|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189949|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK032027|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chr14_+_71289933_71289944	1.2195	CAGCAGG	AK138512|Gfra2|14586|glial cell line derived neurotrophic factor family receptor alpha 2	AK149349|Gfra2|14586|glial cell line derived neurotrophic factor family receptor alpha 2	NM_008115|Gfra2|14586|glial cell line derived neurotrophic factor family receptor alpha 2
mm9_v1_chr1_+_162836541_162836569	1.21785	CAGCAGG	NM_001024952|Rc3h1|381305|RING CCCH (C3H) domains 1	AK139648|Rc3h1|381305|RING CCCH (C3H) domains 1
mm9_v1_chr15_+_81633102_81633182	1.204	CAGCAGG	NM_153484|Tef|21685|thyrotroph embryonic factor	AK045575|Tef|21685|thyrotroph embryonic factor	AK053229|Tef|21685|thyrotroph embryonic factor	AK027965|Tef|21685|thyrotroph embryonic factor	AK141606|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr15_-_78236262_78236306	1.19994	CAGCAGG	CT010210|Tst|22117|thiosulfate sulfurtransferase, mitochondrial	U35741|Tst|22117|thiosulfate sulfurtransferase, mitochondrial	BC005644|Tst|22117|thiosulfate sulfurtransferase, mitochondrial	NM_009437|Tst|22117|thiosulfate sulfurtransferase, mitochondrial	AK003953|Tst|22117|thiosulfate sulfurtransferase, mitochondrial
mm9_v1_chr11_-_87800799_87801034	1.19898	CAGCAGG	AK028319|Dynll2|68097|dynein light chain LC8-type 2	BC011289|Dynll2|68097|dynein light chain LC8-type 2	BC058797|Dynll2|68097|dynein light chain LC8-type 2	BC040822|Dynll2|68097|dynein light chain LC8-type 2	AK011284|Dynll2|68097|dynein light chain LC8-type 2	AK160114|Dynll2|68097|dynein light chain LC8-type 2	AK049645|Dynll2|68097|dynein light chain LC8-type 2	AK078434|Dynll2|68097|dynein light chain LC8-type 2	AK169212|Dynll2|68097|dynein light chain LC8-type 2	NM_026556|Dynll2|68097|dynein light chain LC8-type 2
mm9_v1_chr1_+_189821727_189821874	1.19882	CAGCAGG	BC082324|Esrrg|26381|estrogen-related receptor gamma	NM_011935|Esrrg|26381|estrogen-related receptor gamma	AB093266|Esrrg|26381|estrogen-related receptor gamma	AF117254|Esrrg|26381|estrogen-related receptor gamma	AB221580|Esrrg|26381|estrogen-related receptor gamma
mm9_v1_chr6_-_72312366_72312409	1.19193	CAGCAGG	BC005559|Rnf181|66510|ring finger protein 181	BC083119|Rnf181|66510|ring finger protein 181	NM_025607|Rnf181|66510|ring finger protein 181	AK168670|Rnf181|66510|ring finger protein 181	AK010854|Rnf181|66510|ring finger protein 181	AK014094|Rnf181|66510|ring finger protein 181	AK159788|Rnf181|66510|ring finger protein 181	AK166904|Rnf181|66510|ring finger protein 181	AK166995|Rnf181|66510|ring finger protein 181	AK167396|Rnf181|66510|ring finger protein 181	AK167633|Rnf181|66510|ring finger protein 181	AK167935|Rnf181|66510|ring finger protein 181
mm9_v1_chr1_-_158135155_158135155	1.18023	CAGCAGG	AK039197|Fam163a|329274|family with sequence similarity 163, member A	NM_177838|Fam163a|329274|family with sequence similarity 163, member A
mm9_v1_chr19_-_34676457_34676466	1.17946	CAGCAGG	NM_001101605|Gm14446|667373|predicted gene 14446
mm9_v1_chr11_+_102254699_102254799	1.17396	CAGCAGG	NM_016759|Rundc3a|51799|RUN domain containing 3A
mm9_v1_chr14_-_70205351_70205356	1.1723	CAGCAGG	AK021405|Rhobtb2|246710|Rho-related BTB domain containing 2	NM_153514|Rhobtb2|246710|Rho-related BTB domain containing 2
mm9_v1_chr2_+_28388947_28389056	1.16234	CAGCAGG	NM_001145835|Ralgds|19730|ral guanine nucleotide dissociation stimulator	NM_001145836|Ralgds|19730|ral guanine nucleotide dissociation stimulator	AK159020|Ralgds|19730|ral guanine nucleotide dissociation stimulator	AK159754|Ralgds|19730|ral guanine nucleotide dissociation stimulator
mm9_v1_chr9_+_31923720_31923720	1.16107	CAGCAGG	NM_001195632|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr11_+_98724908_98724950	1.1589	CAGCAGG	NM_197940|Wipf2|68524|WAS/WASL interacting protein family, member 2
mm9_v1_chr19_+_45438212_45438344	1.15326	CAGCAGG	NM_001037758|Btrc|12234|beta-transducin repeat containing protein	NM_009771|Btrc|12234|beta-transducin repeat containing protein	AK220183|Btrc|12234|beta-transducin repeat containing protein	AK145624|Btrc|12234|beta-transducin repeat containing protein	AK052317|Btrc|12234|beta-transducin repeat containing protein	AK083257|Btrc|12234|beta-transducin repeat containing protein	AF081887|Btrc|12234|beta-transducin repeat containing protein	AK032221|Btrc|12234|beta-transducin repeat containing protein	AK145091|Btrc|12234|beta-transducin repeat containing protein	BC052879|Btrc|12234|beta-transducin repeat containing protein	BC003989|Btrc|12234|beta-transducin repeat containing protein	AF099932|Btrc|12234|beta-transducin repeat containing protein	AF110396|Btrc|12234|beta-transducin repeat containing protein	AF112979|Btrc|12234|beta-transducin repeat containing protein	AK180045|Btrc|12234|beta-transducin repeat containing protein	AK188552|Btrc|12234|beta-transducin repeat containing protein	AK189588|Btrc|12234|beta-transducin repeat containing protein
mm9_v1_chr13_-_74346106_74346168	1.14868	CAGCAGG	AK012940|Exoc3|211446|exocyst complex component 3	AK131141|Exoc3|211446|exocyst complex component 3	BC031743|Exoc3|211446|exocyst complex component 3	AK088333|Exoc3|211446|exocyst complex component 3	AK141537|Exoc3|211446|exocyst complex component 3	NM_177333|Exoc3|211446|exocyst complex component 3	AK089979|Exoc3|211446|exocyst complex component 3
mm9_v1_chr17_+_35153523_35153582	1.14719	CAGCAGG	AF134319|D17H6S56E-3|27762|DNA segment, Chr 17, human D6S56E 3	NM_138582|D17H6S56E-3|27762|DNA segment, Chr 17, human D6S56E 3	BC137792|D17H6S56E-3|27762|DNA segment, Chr 17, human D6S56E 3	BC144911|D17H6S56E-3|27762|DNA segment, Chr 17, human D6S56E 3
mm9_v1_chr4_+_59818521_59818521	1.14577	CAGCAGG	AK147437|Snx30|209131|sorting nexin family member 30	NM_172468|Snx30|209131|sorting nexin family member 30
mm9_v1_chr2_-_7317824_7317824	1.14332	CAGCAGG	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr10_+_128185549_128185593	1.13043	CAGCAGG	BC049647|Wibg|78428|within bgcn homolog (Drosophila)	NM_001170869|Wibg|78428|within bgcn homolog (Drosophila)
mm9_v1_chr3_+_103083215_103083215	1.127	CAGCAGG	AY458590|Trim33|94093|tripartite motif-containing 33	NM_001079830|Trim33|94093|tripartite motif-containing 33	NM_053170|Trim33|94093|tripartite motif-containing 33
mm9_v1_chr2_+_109731003_109731053	1.12303	CAGCAGG	AK135810|Lin7c|22343|lin-7 homolog C (C. elegans)	AK083299|Lin7c|22343|lin-7 homolog C (C. elegans)	AK015399|Lin7c|22343|lin-7 homolog C (C. elegans)	AK078923|Lin7c|22343|lin-7 homolog C (C. elegans)	AK128989|Lin7c|22343|lin-7 homolog C (C. elegans)	BC052471|Lin7c|22343|lin-7 homolog C (C. elegans)	AK133531|Lin7c|22343|lin-7 homolog C (C. elegans)	AF173083|Lin7c|22343|lin-7 homolog C (C. elegans)	AF087695|Lin7c|22343|lin-7 homolog C (C. elegans)	BC046966|Lin7c|22343|lin-7 homolog C (C. elegans)	NM_011699|Lin7c|22343|lin-7 homolog C (C. elegans)	AK161076|Lin7c|22343|lin-7 homolog C (C. elegans)
mm9_v1_chr11_-_102017662_102017746	1.12156	CAGCAGG	AK012106|Tmem101|76547|transmembrane protein 101	AK041154|Tmem101|76547|transmembrane protein 101	BC011109|Tmem101|76547|transmembrane protein 101	AK049378|Tmem101|76547|transmembrane protein 101	AK140260|Tmem101|76547|transmembrane protein 101	NM_029649|Tmem101|76547|transmembrane protein 101
mm9_v1_chr14_-_34260323_34260352	1.12095	CAGCAGG	AK139498|Mapk8|26419|mitogen-activated protein kinase 8	AK032486|Mapk8|26419|mitogen-activated protein kinase 8	AK043102|Mapk8|26419|mitogen-activated protein kinase 8	AK085745|Mapk8|26419|mitogen-activated protein kinase 8	AK030767|Mapk8|26419|mitogen-activated protein kinase 8	NM_016700|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr11_-_3352243_3352377	1.12072	CAGCAGG	AK167455|Rnf185|193670|ring finger protein 185	AK077638|Rnf185|193670|ring finger protein 185	BC014812|Rnf185|193670|ring finger protein 185	AK149640|Rnf185|193670|ring finger protein 185	AK168904|Rnf185|193670|ring finger protein 185	AK053358|Rnf185|193670|ring finger protein 185	AK034108|Rnf185|193670|ring finger protein 185	NM_145355|Rnf185|193670|ring finger protein 185	AK052436|Rnf185|193670|ring finger protein 185
mm9_v1_chr15_-_84388245_84388282	1.11684	CAGCAGG	BC094559|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like	NM_177630|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like
mm9_v1_chr8_-_126039287_126039398	1.11125	CAGCAGG	BC046622|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	AK028187|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	AK163434|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	NM_001170975|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	NM_001170976|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	NM_028146|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1
mm9_v1_chr5_+_148768875_148768913	1.10874	CAGCAGG	AK147457|Mtus2|77521|microtubule associated tumor suppressor candidate 2	NM_029920|Mtus2|77521|microtubule associated tumor suppressor candidate 2
mm9_v1_chr2_+_24909898_24909973	1.10174	CAGCAGG	NM_001039386|Nelf|56876|nasal embryonic LHRH factor	NM_001039387|Nelf|56876|nasal embryonic LHRH factor	NM_001177654|Nelf|56876|nasal embryonic LHRH factor	NM_001177655|Nelf|56876|nasal embryonic LHRH factor	NM_020276|Nelf|56876|nasal embryonic LHRH factor	AK004986|Nelf|56876|nasal embryonic LHRH factor	AK041478|Nelf|56876|nasal embryonic LHRH factor	AK158803|Nelf|56876|nasal embryonic LHRH factor	AF266508|Nelf|56876|nasal embryonic LHRH factor	AK019560|Nelf|56876|nasal embryonic LHRH factor	BC006642|Nelf|56876|nasal embryonic LHRH factor	AK053402|Nelf|56876|nasal embryonic LHRH factor	AK165300|Nelf|56876|nasal embryonic LHRH factor
mm9_v1_chr1_+_34636537_34636571	1.09823	CAGCAGG	NM_213727|Fam123c|211383|family with sequence similarity 123, member C	BC070435|Fam123c|211383|family with sequence similarity 123, member C
mm9_v1_chr12_+_109648864_109648871	1.09456	CAGCAGG	BC059839|Eml1|68519|echinoderm microtubule associated protein like 1	NM_001043336|Eml1|68519|echinoderm microtubule associated protein like 1	BC125289|Eml1|68519|echinoderm microtubule associated protein like 1	BC144757|Eml1|68519|echinoderm microtubule associated protein like 1
mm9_v1_chr5_+_35104373_35104397	1.087	CAGCAGG	AK042204|Htt|15194|huntingtin	NM_010414|Htt|15194|huntingtin
mm9_v1_chr17_-_79135885_79135936	1.08684	CAGCAGG	BC090968|Strn|268980|striatin, calmodulin binding protein	NM_011500|Strn|268980|striatin, calmodulin binding protein	AK051549|Strn|268980|striatin, calmodulin binding protein
mm9_v1_chr2_-_91550688_91550738	1.07758	CAGCAGG	BC023673|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK163962|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	BC023712|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	BC033419|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK149672|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK171440|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	BC016669|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	NM_145528|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK154470|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK171206|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)
mm9_v1_chr19_-_34673889_34673923	1.07616	CAGCAGG	NM_001110517|Gm14446|667373|predicted gene 14446
mm9_v1_chr4_+_13711928_13711928	1.06931	CAGCAGG	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr19_+_29064938_29065019	1.06925	CAGCAGG	AK078872|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK161465|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK018787|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK080238|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK012312|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	NM_025950|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	BC031761|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK038578|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK079556|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1
mm9_v1_chrX_-_73119905_73119926	1.0652	CAGCAGG	NM_145629|Pls3|102866|plastin 3 (T-isoform)
mm9_v1_chr7_-_52125157_52125184	1.0641	CAGCAGG	BC024632|Ptov1|84113|prostate tumor over expressed gene 1	NM_133949|Ptov1|84113|prostate tumor over expressed gene 1
mm9_v1_chr4_-_130037145_130037207	1.06338	CAGCAGG	AJ272345|Zcchc17|619605|zinc finger, CCHC domain containing 17	AK050342|Zcchc17|619605|zinc finger, CCHC domain containing 17	BC049231|Zcchc17|619605|zinc finger, CCHC domain containing 17	AY253297|Zcchc17|619605|zinc finger, CCHC domain containing 17	AK161588|Zcchc17|619605|zinc finger, CCHC domain containing 17	AK152289|Zcchc17|619605|zinc finger, CCHC domain containing 17	AK168912|Zcchc17|619605|zinc finger, CCHC domain containing 17	NM_153160|Zcchc17|619605|zinc finger, CCHC domain containing 17	AK012953|Zcchc17|619605|zinc finger, CCHC domain containing 17
mm9_v1_chr6_-_91757386_91757427	1.05567	CAGCAGG	NM_001159507|Grip2|243547|glutamate receptor interacting protein 2
mm9_v1_chr2_-_162486882_162486956	1.0499	CAGCAGG	AF244125|Ptprt|19281|protein tyrosine phosphatase, receptor type, T	NM_021464|Ptprt|19281|protein tyrosine phosphatase, receptor type, T
mm9_v1_chr5_+_36100508_36100541	1.04632	CAGCAGG	AK154494|Ablim2|231148|actin-binding LIM protein 2	NM_001177696|Ablim2|231148|actin-binding LIM protein 2	NM_001177697|Ablim2|231148|actin-binding LIM protein 2	NM_001177698|Ablim2|231148|actin-binding LIM protein 2	NM_001177699|Ablim2|231148|actin-binding LIM protein 2	NM_001177700|Ablim2|231148|actin-binding LIM protein 2	NM_177678|Ablim2|231148|actin-binding LIM protein 2
mm9_v1_chr12_-_112615921_112615933	1.04458	CAGCAGG	NM_183016|Cdc42bpb|217866|CDC42 binding protein kinase beta
mm9_v1_chr1_-_182123596_182123618	1.04425	CAGCAGG	AJ278735|Adck3|67426|aarF domain containing kinase 3	NM_001163290|Adck3|67426|aarF domain containing kinase 3
mm9_v1_chr12_-_80084464_80084464	1.04254	CAGCAGG	BC057677|Tmem229b|268567|transmembrane protein 229B	NM_001170401|Tmem229b|268567|transmembrane protein 229B
mm9_v1_chr2_-_165113250_165113360	1.03934	CAGCAGG	AK170715|Slc35c2|228875|solute carrier family 35, member C2	AK155539|Slc35c2|228875|solute carrier family 35, member C2	BC094025|Slc35c2|228875|solute carrier family 35, member C2	AK053180|Slc35c2|228875|solute carrier family 35, member C2	AK160899|Slc35c2|228875|solute carrier family 35, member C2	BC018327|Slc35c2|228875|solute carrier family 35, member C2	NM_144893|Slc35c2|228875|solute carrier family 35, member C2	AK158331|Slc35c2|228875|solute carrier family 35, member C2
mm9_v1_chr2_+_144425688_144425695	1.03767	CAGCAGG	NM_025314|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)
mm9_v1_chr5_+_140383896_140383896	1.03669	CAGCAGG	AK044511|Elfn1|243312|leucine rich repeat and fibronectin type III, extracellular 1	NM_175522|Elfn1|243312|leucine rich repeat and fibronectin type III, extracellular 1
mm9_v1_chr15_+_81641832_81641859	1.02878	CAGCAGG	NM_017376|Tef|21685|thyrotroph embryonic factor	AY540631|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr18_+_37249789_37249789	1.02631	CAGCAGG	AY013768|Pcdhac1|353236|protocadherin alpha subfamily C, 1	NM_001003671|Pcdhac1|353236|protocadherin alpha subfamily C, 1
mm9_v1_chr4_-_118081793_118081882	1.02253	CAGCAGG	GU433214|Szt2|230676|seizure threshold 2	FJ998170|Szt2|230676|seizure threshold 2	NM_198170|Szt2|230676|seizure threshold 2
mm9_v1_chr2_-_77008655_77008700	1.02233	CAGCAGG	AK045498|Ccdc141|545428|coiled-coil domain containing 141	AK011952|Ccdc141|545428|coiled-coil domain containing 141	AK053175|Ccdc141|545428|coiled-coil domain containing 141	NM_001025576|Ccdc141|545428|coiled-coil domain containing 141	AK041121|Ccdc141|545428|coiled-coil domain containing 141
mm9_v1_chr7_-_85722668_85722860	1.02131	CAGCAGG	AY336094|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	NM_008746|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	NM_182809|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	BC139764|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	AF035399|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	AF035400|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3
mm9_v1_chr7_-_134351860_134352145	1.02072	CAGCAGG	AK047320|Tbc1d10b|68449|TBC1 domain family, member 10b	AK047327|Tbc1d10b|68449|TBC1 domain family, member 10b	NM_144522|Tbc1d10b|68449|TBC1 domain family, member 10b
mm9_v1_chr3_+_108087046_108087050	1.01965	CAGCAGG	BC056343|Sort1|20661|sortilin 1	NM_019972|Sort1|20661|sortilin 1
mm9_v1_chr2_+_118489312_118489451	1.01909	CAGCAGG	BC079572|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6	NM_001033254|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6	BC150754|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6
mm9_v1_chr8_-_72963464_72963487	1.01796	CAGCAGG	AK129173|Crtc1|382056|CREB regulated transcription coactivator 1	BC080308|Crtc1|382056|CREB regulated transcription coactivator 1	NM_001004062|Crtc1|382056|CREB regulated transcription coactivator 1	BC056137|Crtc1|382056|CREB regulated transcription coactivator 1	BC068139|Crtc1|382056|CREB regulated transcription coactivator 1
mm9_v1_chr9_+_83441886_83441956	1.01734	CAGCAGG	AK032092|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2	NM_172507|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2	AK029392|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2	AK076202|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2	AK160357|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2
mm9_v1_chr14_-_21613162_21613325	1.01657	CAGCAGG	AF395884|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK154764|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC025597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK078311|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC019162|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK081969|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK031213|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK054406|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039138|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039139|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_178597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma
mm9_v1_chr9_+_74918979_74919024	1.01644	CAGCAGG	AK032713|Myo5a|17918|myosin VA	NM_010864|Myo5a|17918|myosin VA
mm9_v1_chr1_-_107253245_107253286	1.01423	CAGCAGG	AK044638|Rnf152|320311|ring finger protein 152	NM_001160368|Rnf152|320311|ring finger protein 152	NM_178779|Rnf152|320311|ring finger protein 152
mm9_v1_chr4_+_155265932_155266005	1.01036	CAGCAGG	AK147505|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	BC067016|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	NM_207223|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm9_v1_chr3_+_94114044_94114121	1.00183	CAGCAGG	AK139993|Them4|75778|thioesterase superfamily member 4	AK138397|Them4|75778|thioesterase superfamily member 4	NM_029431|Them4|75778|thioesterase superfamily member 4	BC134396|Them4|75778|thioesterase superfamily member 4	AK014834|Them4|75778|thioesterase superfamily member 4
mm9_v1_chr8_+_85387234_85387370	1.00103	CAGCAGG	AK032722|Rnf150|330812|ring finger protein 150	AK041412|Rnf150|330812|ring finger protein 150	NM_177378|Rnf150|330812|ring finger protein 150	AK220374|Rnf150|330812|ring finger protein 150
mm9_v1_chr11_-_78510874_78510941	1.00029	CAGCAGG	BC058652|Nlk|18099|nemo like kinase	NM_008702|Nlk|18099|nemo like kinase
mm9_v1_chr5_+_124889925_124890006	0.994984	CAGCAGG	NM_030241|Setd8|67956|SET domain containing (lysine methyltransferase) 8	AK030904|Setd8|67956|SET domain containing (lysine methyltransferase) 8	AK088097|Setd8|67956|SET domain containing (lysine methyltransferase) 8	BC108333|Setd8|67956|SET domain containing (lysine methyltransferase) 8
mm9_v1_chr8_-_35209773_35209872	0.989399	CAGCAGG	AK159401|Leprotl1|68192|leptin receptor overlapping transcript-like 1	BC004677|Leprotl1|68192|leptin receptor overlapping transcript-like 1	NM_026609|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK003329|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK153277|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK075740|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK150289|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK154712|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK013870|Leprotl1|68192|leptin receptor overlapping transcript-like 1
mm9_v1_chr11_-_3271367_3271408	0.988719	CAGCAGG	AB005132|Limk2|16886|LIM motif-containing protein kinase 2	NM_173053|Limk2|16886|LIM motif-containing protein kinase 2
mm9_v1_chr11_-_115128540_115128560	0.988275	CAGCAGG	NM_010350|Grin2c|14813|glutamate receptor, ionotropic, NMDA2C (epsilon 3)
mm9_v1_chr2_-_7317513_7317626	0.986207	CAGCAGG	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr15_+_81702875_81703029	0.974525	CAGCAGG	NM_080633|Aco2|11429|aconitase 2, mitochondrial	AK143917|Aco2|11429|aconitase 2, mitochondrial	AK145511|Aco2|11429|aconitase 2, mitochondrial	AK150027|Aco2|11429|aconitase 2, mitochondrial	AK150954|Aco2|11429|aconitase 2, mitochondrial	AK165411|Aco2|11429|aconitase 2, mitochondrial	BC094462|Aco2|11429|aconitase 2, mitochondrial	AK029122|LOC100504340|100504340|hypothetical protein LOC100504340
mm9_v1_chr4_+_125939622_125939671	0.973979	CAGCAGG	AK151747|Trappc3|27096|trafficking protein particle complex 3	BC003736|Trappc3|27096|trafficking protein particle complex 3	NM_013718|Trappc3|27096|trafficking protein particle complex 3	AF041433|Trappc3|27096|trafficking protein particle complex 3
mm9_v1_chr1_+_91351373_91351428	0.97165	CAGCAGG	AK147503|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	NM_001037136|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	NM_178119|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	AK046523|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	AK129289|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm9_v1_chr1_+_183081058_183081062	0.966309	CAGCAGG	NM_030131|Cnih4|98417|cornichon homolog 4 (Drosophila)
mm9_v1_chr18_+_37170365_37170627	0.965321	CAGCAGG	AK141960|Pcdha11|12942|protocadherin alpha 11	AK139436|Pcdha11|12942|protocadherin alpha 11	AK043705|Pcdha11|12942|protocadherin alpha 11	BC141349|Pcdha11|12942|protocadherin alpha 11	AY013758|Pcdha11|12942|protocadherin alpha 11	NM_009960|Pcdha11|12942|protocadherin alpha 11	AB008182|Pcdha11|12942|protocadherin alpha 11
mm9_v1_chr11_-_87811778_87811799	0.963415	CAGCAGG	BC049621|Dynll2|68097|dynein light chain LC8-type 2	AK006876|Dynll2|68097|dynein light chain LC8-type 2	NM_001168471|Dynll2|68097|dynein light chain LC8-type 2
mm9_v1_chr2_+_118502976_118503018	0.960845	CAGCAGG	NM_001145854|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6	AK028788|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6	AK145601|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6
mm9_v1_chr14_+_69808694_69808750	0.952795	CAGCAGG	BC132401|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)	BC132427|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)	AK137281|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)	NM_010921|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)	U88542|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)	BC050109|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)
mm9_v1_chr18_-_20904585_20904945	0.950951	CAGCAGG	AK144997|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK138247|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK163956|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK164262|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK164724|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK137385|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK138610|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AF097158|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	NM_019737|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6
mm9_v1_chr16_-_37385024_37385045	0.946736	CAGCAGG	AK043658|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114611|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114612|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114613|Stxbp5l|207227|syntaxin binding protein 5-like	NM_172440|Stxbp5l|207227|syntaxin binding protein 5-like
mm9_v1_chr15_-_89026839_89026926	0.946308	CAGCAGG	BC030395|Fam116b|69440|family with sequence similarity 116, member B	BC139003|Fam116b|69440|family with sequence similarity 116, member B	AK084555|Fam116b|69440|family with sequence similarity 116, member B	NM_027081|Fam116b|69440|family with sequence similarity 116, member B	AK154949|Fam116b|69440|family with sequence similarity 116, member B
mm9_v1_chr15_-_102993714_102993747	0.946065	CAGCAGG	BC062960|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	NM_027885|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK090367|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK198888|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK204061|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase
mm9_v1_chr2_+_153834000_153834013	0.945154	CAGCAGG	AK009032|Psp|19194|parotid secretory protein	AK010181|Psp|19194|parotid secretory protein	AK009654|Psp|19194|parotid secretory protein	BC010288|Psp|19194|parotid secretory protein	BC053336|Psp|19194|parotid secretory protein	NM_008953|Psp|19194|parotid secretory protein	BC037124|Psp|19194|parotid secretory protein
mm9_v1_chr4_+_34841027_34841057	0.944119	CAGCAGG	NM_009889|Cga|12640|glycoprotein hormones, alpha subunit	BC087926|Cga|12640|glycoprotein hormones, alpha subunit	J00643|Cga|12640|glycoprotein hormones, alpha subunit
mm9_v1_chr11_-_101087738_101087767	0.941222	CAGCAGG	AK045374|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	AK138942|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	U60453|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	AK164192|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	AK140694|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	NM_007970|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)
mm9_v1_chr19_-_41922577_41922621	0.937508	CAGCAGG	BC034214|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	BC085510|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	AK081171|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	NM_177603|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2
mm9_v1_chr14_+_76904316_76904371	0.93615	CAGCAGG	AK147039|Tsc22d1|21807|TSC22 domain family, member 1	NM_009366|Tsc22d1|21807|TSC22 domain family, member 1	AK145204|Tsc22d1|21807|TSC22 domain family, member 1	AK135277|Tsc22d1|21807|TSC22 domain family, member 1	AK135282|Tsc22d1|21807|TSC22 domain family, member 1	AK135514|Tsc22d1|21807|TSC22 domain family, member 1	AK148732|Tsc22d1|21807|TSC22 domain family, member 1	X62940|Tsc22d1|21807|TSC22 domain family, member 1	AK179000|Tsc22d1|21807|TSC22 domain family, member 1	BC026703|Tsc22d1|21807|TSC22 domain family, member 1
mm9_v1_chr6_-_91361356_91361402	0.935962	CAGCAGG	BC049093|Wnt7a|22421|wingless-related MMTV integration site 7A	BC057586|Wnt7a|22421|wingless-related MMTV integration site 7A	AK004683|Wnt7a|22421|wingless-related MMTV integration site 7A	NM_009527|Wnt7a|22421|wingless-related MMTV integration site 7A
mm9_v1_chr10_-_18506598_18506598	0.933092	CAGCAGG	AK030207|Gm4922|237300|predicted gene 4922	NM_177706|Gm4922|237300|predicted gene 4922
mm9_v1_chr11_+_53380870_53380943	0.933088	CAGCAGG	AK161223|Kif3a|16568|kinesin family member 3A	NM_008443|Kif3a|16568|kinesin family member 3A	D12645|Kif3a|16568|kinesin family member 3A	AK161920|Kif3a|16568|kinesin family member 3A	AK169425|Kif3a|16568|kinesin family member 3A	BC052707|Kif3a|16568|kinesin family member 3A	BC044720|Kif3a|16568|kinesin family member 3A	AK147078|Kif3a|16568|kinesin family member 3A	BC023936|Kif3a|16568|kinesin family member 3A
mm9_v1_chr15_+_88919467_88919574	0.929555	CAGCAGG	BC141293|1300018J18Rik|223776|RIKEN cDNA 1300018J18 gene	AK088096|1300018J18Rik|223776|RIKEN cDNA 1300018J18 gene	AK054432|1300018J18Rik|223776|RIKEN cDNA 1300018J18 gene	AK161059|1300018J18Rik|223776|RIKEN cDNA 1300018J18 gene	AK005048|1300018J18Rik|223776|RIKEN cDNA 1300018J18 gene	BC117817|1300018J18Rik|223776|RIKEN cDNA 1300018J18 gene	BC117818|1300018J18Rik|223776|RIKEN cDNA 1300018J18 gene	NM_027905|1300018J18Rik|223776|RIKEN cDNA 1300018J18 gene
mm9_v1_chr4_-_147278927_147279021	0.929483	CAGCAGG	NM_133201|Mfn2|170731|mitofusin 2
mm9_v1_chr9_+_58430031_58430196	0.92883	CAGCAGG	NM_009145|Nptn|20320|neuroplastin	BC039191|Nptn|20320|neuroplastin
mm9_v1_chr15_-_12522310_12522310	0.926169	CAGCAGG	NM_001081064|Pdzd2|68070|PDZ domain containing 2
mm9_v1_chr15_+_78707595_78707620	0.918074	CAGCAGG	BC026802|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1	NM_145929|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1
mm9_v1_chr8_+_114062242_114062242	0.917128	CAGCAGG	NM_001168623|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr16_+_31422377_31422406	0.915924	CAGCAGG	BC043683|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	NM_175177|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr18_-_35862744_35862797	0.914	CAGCAGG	AK012521|Dnajc18|76594|DnaJ (Hsp40) homolog, subfamily C, member 18	BC026452|Dnajc18|76594|DnaJ (Hsp40) homolog, subfamily C, member 18	AK030483|Dnajc18|76594|DnaJ (Hsp40) homolog, subfamily C, member 18	NM_029669|Dnajc18|76594|DnaJ (Hsp40) homolog, subfamily C, member 18
mm9_v1_chrX_-_73120485_73120524	0.913636	CAGCAGG	AK165540|Pls3|102866|plastin 3 (T-isoform)	NM_001166453|Pls3|102866|plastin 3 (T-isoform)
mm9_v1_chr7_-_74790088_74790121	0.913514	CAGCAGG	AK004904|Lrrc28|67867|leucine rich repeat containing 28	AK008713|Lrrc28|67867|leucine rich repeat containing 28	AK159417|Lrrc28|67867|leucine rich repeat containing 28	AK050154|Lrrc28|67867|leucine rich repeat containing 28	AK077270|Lrrc28|67867|leucine rich repeat containing 28	NM_027413|Lrrc28|67867|leucine rich repeat containing 28	NM_175124|Lrrc28|67867|leucine rich repeat containing 28
mm9_v1_chr16_+_18836666_18836685	0.911979	CAGCAGG	AK160192|2510002D24Rik|72307|RIKEN cDNA 2510002D24 gene	NM_001033164|2510002D24Rik|72307|RIKEN cDNA 2510002D24 gene	AK010889|2510002D24Rik|72307|RIKEN cDNA 2510002D24 gene	AK153794|2510002D24Rik|72307|RIKEN cDNA 2510002D24 gene
mm9_v1_chr8_-_4325051_4325113	0.910432	CAGCAGG	AK011870|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK080365|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK075818|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK034536|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	NM_010485|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)
mm9_v1_chr18_-_57134974_57135060	0.907566	CAGCAGG	BC116244|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	BC116245|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	BC127172|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	AK021208|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	AK053997|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	AK140255|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	NM_029909|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene
mm9_v1_chr12_+_88019649_88019727	0.900655	CAGCAGG	AB284948|Vash1|238328|vasohibin 1	AK090166|Vash1|238328|vasohibin 1	NM_177354|Vash1|238328|vasohibin 1	AK086583|Vash1|238328|vasohibin 1
mm9_v1_chr7_-_17200285_17200343	0.900186	CAGCAGG	BC139459|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	BC139461|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	AK147326|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	AK147688|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	NM_172739|Grlf1|232906|glucocorticoid receptor DNA binding factor 1
mm9_v1_chr15_+_86044834_86044934	0.894929	CAGCAGG	AK155770|Tbc1d22a|223754|TBC1 domain family, member 22a	AK154602|Tbc1d22a|223754|TBC1 domain family, member 22a	AK154226|Tbc1d22a|223754|TBC1 domain family, member 22a	AK039627|Tbc1d22a|223754|TBC1 domain family, member 22a	AK155459|Tbc1d22a|223754|TBC1 domain family, member 22a	AK146872|Tbc1d22a|223754|TBC1 domain family, member 22a	BC066009|Tbc1d22a|223754|TBC1 domain family, member 22a	NM_145476|Tbc1d22a|223754|TBC1 domain family, member 22a
mm9_v1_chr4_-_135543058_135543193	0.889831	CAGCAGG	BC052695|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene	AF400670|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene	AK050261|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene	NM_025411|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene	AK004208|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene
mm9_v1_chr17_+_70911084_70911126	0.889072	CAGCAGG	NM_001128181|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK136926|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr19_+_42164922_42164992	0.887951	CAGCAGG	NM_145501|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	AK030725|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	BC110363|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	BC089309|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha
mm9_v1_chr7_+_26682681_26682715	0.882538	CAGCAGG	BC060973|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10	NM_009999|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10	AF128849|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10	M21856|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10	X99715|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10
mm9_v1_chr11_-_109159357_109159494	0.880247	CAGCAGG	BC129899|Rgs9|19739|regulator of G-protein signaling 9	BC129898|Rgs9|19739|regulator of G-protein signaling 9	AF011358|Rgs9|19739|regulator of G-protein signaling 9	AK138159|Rgs9|19739|regulator of G-protein signaling 9	AK085443|Rgs9|19739|regulator of G-protein signaling 9	AF125046|Rgs9|19739|regulator of G-protein signaling 9	AK164961|Rgs9|19739|regulator of G-protein signaling 9	NM_001165934|Rgs9|19739|regulator of G-protein signaling 9	NM_011268|Rgs9|19739|regulator of G-protein signaling 9
mm9_v1_chr1_-_173152634_173152646	0.878275	CAGCAGG	AK028388|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)	NM_001037170|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)
mm9_v1_chr7_-_35597470_35597729	0.874767	CAGCAGG	AK005217|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	AF308145|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	BC051124|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	AK038952|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	AK051290|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	NM_175140|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8
mm9_v1_chr18_-_6516073_6516084	0.871325	CAGCAGG	AK148194|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	AF079765|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	NM_007935|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)
mm9_v1_chr3_-_108029499_108029565	0.868297	CAGCAGG	BC030038|Sypl2|17306|synaptophysin-like 2	AB010140|Sypl2|17306|synaptophysin-like 2	NM_008596|Sypl2|17306|synaptophysin-like 2	AK082471|Sypl2|17306|synaptophysin-like 2	AK162663|Sypl2|17306|synaptophysin-like 2	AK052749|Sypl2|17306|synaptophysin-like 2	AK083422|Sypl2|17306|synaptophysin-like 2
mm9_v1_chr10_+_59165307_59165416	0.866189	CAGCAGG	AK083520|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK049521|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK050113|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK046049|Cbara1|216001|calcium binding atopy-related autoantigen 1	BC026566|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK077605|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK029884|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK052485|Cbara1|216001|calcium binding atopy-related autoantigen 1	BC018320|Cbara1|216001|calcium binding atopy-related autoantigen 1	BC023022|Cbara1|216001|calcium binding atopy-related autoantigen 1	NM_144822|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK085553|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK051470|Cbara1|216001|calcium binding atopy-related autoantigen 1
mm9_v1_chr11_-_76384852_76384920	0.864938	CAGCAGG	AK142364|Abr|109934|active BCR-related gene	NM_198895|Abr|109934|active BCR-related gene
mm9_v1_chr7_-_71083734_71083823	0.861203	CAGCAGG	AJ245644|Klf13|50794|Kruppel-like factor 13	AJ275987|Klf13|50794|Kruppel-like factor 13	BC051557|Klf13|50794|Kruppel-like factor 13	AK155298|Klf13|50794|Kruppel-like factor 13	AF251796|Klf13|50794|Kruppel-like factor 13	NM_021366|Klf13|50794|Kruppel-like factor 13
mm9_v1_chr10_+_85061155_85061265	0.856971	CAGCAGG	NM_001017525|Btbd11|74007|BTB (POZ) domain containing 11	AK044022|Btbd11|74007|BTB (POZ) domain containing 11
mm9_v1_chr9_+_108997946_108997990	0.852702	CAGCAGG	NM_172775|Plxnb1|235611|plexin B1
mm9_v1_chr4_+_104829951_104829954	0.845595	CAGCAGG	AK011276|Ppap2b|67916|phosphatidic acid phosphatase type 2B	NM_080555|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr2_+_28368603_28368686	0.844006	CAGCAGG	NM_001145834|Ralgds|19730|ral guanine nucleotide dissociation stimulator	NM_009058|Ralgds|19730|ral guanine nucleotide dissociation stimulator
mm9_v1_chr7_-_148725673_148725757	0.84355	CAGCAGG	AK036717|Chid1|68038|chitinase domain containing 1	AK014071|Chid1|68038|chitinase domain containing 1	AK050655|Chid1|68038|chitinase domain containing 1	BC006876|Chid1|68038|chitinase domain containing 1	AK160156|Chid1|68038|chitinase domain containing 1	AK160200|Chid1|68038|chitinase domain containing 1	BC061063|Chid1|68038|chitinase domain containing 1	AK147377|Chid1|68038|chitinase domain containing 1	AK014141|Chid1|68038|chitinase domain containing 1	AK040002|Chid1|68038|chitinase domain containing 1	NM_001142681|Chid1|68038|chitinase domain containing 1	NM_026522|Chid1|68038|chitinase domain containing 1
mm9_v1_chr17_+_29686744_29686746	0.842411	CAGCAGG	BC045600|Tbc1d22b|381085|TBC1 domain family, member 22B	NM_198647|Tbc1d22b|381085|TBC1 domain family, member 22B
mm9_v1_chr8_-_122159431_122159579	0.842017	CAGCAGG	BC043936|Kcng4|66733|potassium voltage-gated channel, subfamily G, member 4	NM_025734|Kcng4|66733|potassium voltage-gated channel, subfamily G, member 4
mm9_v1_chr4_+_106323673_106323718	0.841602	CAGCAGG	NM_001083887|Pars2|230577|prolyl-tRNA synthetase (mitochondrial)(putative)	NM_172272|Pars2|230577|prolyl-tRNA synthetase (mitochondrial)(putative)	AK154150|Pars2|230577|prolyl-tRNA synthetase (mitochondrial)(putative)	BC038817|Pars2|230577|prolyl-tRNA synthetase (mitochondrial)(putative)
mm9_v1_chr16_-_10447440_10447456	0.836315	CAGCAGG	BC068110|Fam18a|383103|family with sequence similarity 18, member A	NM_001013778|Fam18a|383103|family with sequence similarity 18, member A
mm9_v1_chr4_+_129138915_129138922	0.83463	CAGCAGG	BC049111|Bsdc1|100383|BSD domain containing 1	NM_133889|Bsdc1|100383|BSD domain containing 1
mm9_v1_chr7_+_16683891_16684052	0.826124	CAGCAGG	AK050623|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK171998|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	BC004804|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK013895|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK004826|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK005372|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK136689|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	NM_025898|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha
mm9_v1_chr1_-_153937364_153937449	0.822465	CAGCAGG	AK144357|LOC545371|545371|hypothetical protein LOC545371	NM_197990|1700025G04Rik|69399|RIKEN cDNA 1700025G04 gene
mm9_v1_chr7_-_26324847_26325022	0.821932	CAGCAGG	AB500065|Ceacam2|26367|carcinoembryonic antigen-related cell adhesion molecule 2	AF101164|Ceacam2|26367|carcinoembryonic antigen-related cell adhesion molecule 2	X76085|Ceacam2|26367|carcinoembryonic antigen-related cell adhesion molecule 2	NM_001113368|Ceacam2|26367|carcinoembryonic antigen-related cell adhesion molecule 2	NM_001113369|Ceacam2|26367|carcinoembryonic antigen-related cell adhesion molecule 2	NM_007543|Ceacam2|26367|carcinoembryonic antigen-related cell adhesion molecule 2
mm9_v1_chr8_+_119028873_119028914	0.817291	CAGCAGG	BC048623|Dynlrb2|75465|dynein light chain roadblock-type 2	AK005789|Dynlrb2|75465|dynein light chain roadblock-type 2	NM_029297|Dynlrb2|75465|dynein light chain roadblock-type 2
mm9_v1_chr15_+_41620484_41620584	0.80503	CAGCAGG	NM_001130165|Oxr1|170719|oxidation resistance 1	BC089183|Oxr1|170719|oxidation resistance 1
mm9_v1_chr9_-_110379093_110379197	0.799783	CAGCAGG	BC065167|Klhl18|270201|kelch-like 18 (Drosophila)	BC025563|Klhl18|270201|kelch-like 18 (Drosophila)	AK173029|Klhl18|270201|kelch-like 18 (Drosophila)	NM_177771|Klhl18|270201|kelch-like 18 (Drosophila)
mm9_v1_chr8_-_97666364_97666472	0.795219	CAGCAGG	AK166482|Kifc3|16582|kinesin family member C3	BC070429|Kifc3|16582|kinesin family member C3	NM_001145831|Kifc3|16582|kinesin family member C3	NM_010631|Kifc3|16582|kinesin family member C3	D49546|Kifc3|16582|kinesin family member C3
mm9_v1_chr1_-_37592976_37593103	0.793879	CAGCAGG	AB053217|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	AK163327|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	AK082702|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	NM_173870|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm9_v1_chr9_+_106073255_106073259	0.787935	CAGCAGG	AK037620|Wdr82|77305|WD repeat domain containing 82	AK035109|Wdr82|77305|WD repeat domain containing 82	AK149692|Wdr82|77305|WD repeat domain containing 82	AK159240|Wdr82|77305|WD repeat domain containing 82	AK172474|Wdr82|77305|WD repeat domain containing 82	NM_029896|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr7_+_120909509_120909519	0.786317	CAGCAGG	NM_145584|Spon1|233744|spondin 1, (f-spondin) extracellular matrix protein
mm9_v1_chr7_+_129276547_129276617	0.786052	CAGCAGG	AK076738|Dctn5|59288|dynactin 5	NM_021608|Dctn5|59288|dynactin 5	BC005671|Dctn5|59288|dynactin 5	AK010238|Dctn5|59288|dynactin 5	AK168983|Dctn5|59288|dynactin 5	AK076100|Dctn5|59288|dynactin 5	AK151193|Dctn5|59288|dynactin 5	AK151876|Dctn5|59288|dynactin 5	BC010834|Dctn5|59288|dynactin 5	BC092273|Dctn5|59288|dynactin 5	AK146123|Dctn5|59288|dynactin 5	AK145958|Dctn5|59288|dynactin 5	AF190795|Dctn5|59288|dynactin 5	AK051957|Dctn5|59288|dynactin 5
mm9_v1_chr11_-_61393108_61393198	0.785766	CAGCAGG	AK195274|Epn2|13855|epsin 2	AK139793|Epn2|13855|epsin 2	BC039138|Epn2|13855|epsin 2	NM_010148|Epn2|13855|epsin 2	AK036331|Epn2|13855|epsin 2	AK173093|Epn2|13855|epsin 2	AK139234|Epn2|13855|epsin 2	AK160782|Epn2|13855|epsin 2
mm9_v1_chr4_+_86520317_86520392	0.78494	CAGCAGG	BC059819|Acer2|230379|alkaline ceramidase 2	NM_139306|Acer2|230379|alkaline ceramidase 2	AK085306|Acer2|230379|alkaline ceramidase 2	AF282864|Acer2|230379|alkaline ceramidase 2	AY312515|Acer2|230379|alkaline ceramidase 2
mm9_v1_chr1_-_134439500_134439516	0.783632	CAGCAGG	AK147602|Cntn2|21367|contactin 2	NM_177129|Cntn2|21367|contactin 2
mm9_v1_chr11_-_43561446_43561512	0.780017	CAGCAGG	AK019021|Ttc1|66827|tetratricopeptide repeat domain 1	BC010236|Ttc1|66827|tetratricopeptide repeat domain 1	NM_133795|Ttc1|66827|tetratricopeptide repeat domain 1	AK166431|Ttc1|66827|tetratricopeptide repeat domain 1	AK170032|Ttc1|66827|tetratricopeptide repeat domain 1	AK170230|Ttc1|66827|tetratricopeptide repeat domain 1	AK077715|Ttc1|66827|tetratricopeptide repeat domain 1
mm9_v1_chr8_-_108282498_108282528	0.773273	CAGCAGG	AK017684|Gfod2|70575|glucose-fructose oxidoreductase domain containing 2	AK141521|Gfod2|70575|glucose-fructose oxidoreductase domain containing 2	NM_027469|Gfod2|70575|glucose-fructose oxidoreductase domain containing 2	BC013623|Gfod2|70575|glucose-fructose oxidoreductase domain containing 2
mm9_v1_chr8_-_72662994_72663095	0.766349	CAGCAGG	AF123704|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	L43164|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	AF094761|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	AK146148|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	AK087462|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	AK052298|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	NM_001025589|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	NM_011266|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein
mm9_v1_chr2_-_113839354_113839354	0.765617	CAGCAGG	BC058595|Gjd2|14617|gap junction protein, delta 2	NM_010290|Gjd2|14617|gap junction protein, delta 2
mm9_v1_chr19_-_6141100_6141219	0.76305	CAGCAGG	AF143680|Arl2|56327|ADP-ribosylation factor-like 2	BC052938|Arl2|56327|ADP-ribosylation factor-like 2	BC060259|Arl2|56327|ADP-ribosylation factor-like 2	AK011366|Arl2|56327|ADP-ribosylation factor-like 2	NM_019722|Arl2|56327|ADP-ribosylation factor-like 2	BC080803|Arl2|56327|ADP-ribosylation factor-like 2
mm9_v1_chr16_+_31428833_31428879	0.760086	CAGCAGG	AK146321|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	AK145711|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	NM_001122683|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	AK146962|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr7_-_87065480_87065546	0.759983	CAGCAGG	U91933|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	BC060236|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	BC028319|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK037336|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK028372|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK083911|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK150085|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	NM_009682|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit
mm9_v1_chr4_-_71861939_71861956	0.758956	CAGCAGG	NM_011599|Tle1|21885|transducin-like enhancer of split 1, homolog of Drosophila E(spl)
mm9_v1_chr7_+_24897332_24897378	0.757203	CAGCAGG	AF167319|Zfp112|57745|zinc finger protein 112	NM_021307|Zfp112|57745|zinc finger protein 112	BC120886|Zfp112|57745|zinc finger protein 112
mm9_v1_chr7_+_13563196_13563254	0.755445	CAGCAGG	AK041761|Zfp446|269870|zinc finger protein 446	BC117850|Zfp446|269870|zinc finger protein 446	BC117851|Zfp446|269870|zinc finger protein 446	NM_001168561|Zfp446|269870|zinc finger protein 446	NM_001168562|Zfp446|269870|zinc finger protein 446	NM_175558|Zfp446|269870|zinc finger protein 446	AK044666|Zfp446|269870|zinc finger protein 446	BC048909|Zfp446|269870|zinc finger protein 446
mm9_v1_chr1_-_36502079_36502124	0.754114	CAGCAGG	AK142024|Lman2l|214895|lectin, mannose-binding 2-like	BC046969|Lman2l|214895|lectin, mannose-binding 2-like	NM_001013374|Lman2l|214895|lectin, mannose-binding 2-like	BC027226|Lman2l|214895|lectin, mannose-binding 2-like	AK158015|Lman2l|214895|lectin, mannose-binding 2-like
mm9_v1_chr13_-_12612537_12612714	0.753819	CAGCAGG	AK148351|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	AK041545|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	AK042414|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	AF358671|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	NM_133643|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain
mm9_v1_chr18_+_42435006_42435038	0.752498	CAGCAGG	NM_172626|Rbm27|225432|RNA binding motif protein 27	AY461716|Rbm27|225432|RNA binding motif protein 27
mm9_v1_chr9_-_110782576_110782616	0.750701	CAGCAGG	AK031966|Tmie|20776|transmembrane inner ear	AF481143|Tmie|20776|transmembrane inner ear	NM_146260|Tmie|20776|transmembrane inner ear	AK030341|Tmie|20776|transmembrane inner ear
mm9_v1_chr4_+_138908480_138908511	0.74911	CAGCAGG	NM_001039200|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	NM_146157|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene
mm9_v1_chr4_-_41450064_41450152	0.747438	CAGCAGG	BC137640|AI464131|329828|expressed sequence AI464131	BC140956|AI464131|329828|expressed sequence AI464131	AK173117|AI464131|329828|expressed sequence AI464131	NM_001085515|AI464131|329828|expressed sequence AI464131
mm9_v1_chr11_-_95375878_95375924	0.744089	CAGCAGG	AK158760|Nxph3|104079|neurexophilin 3	NM_130858|Nxph3|104079|neurexophilin 3
mm9_v1_chr5_-_113592211_113592370	0.743929	CAGCAGG	BC147338|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene	BC147339|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene	AK041243|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene	AK171617|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene	NM_172884|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene	AK154484|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene
mm9_v1_chr2_+_29682879_29682924	0.741927	CAGCAGG	AK012124|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK019352|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK049227|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK049849|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	NM_026615|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK085178|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	BC026994|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK210360|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)
mm9_v1_chr2_-_74416925_74417031	0.738374	CAGCAGG	AY312281|Lnp|69605|limb and neural patterns	BC057961|Lnp|69605|limb and neural patterns	AK173241|Lnp|69605|limb and neural patterns	AK053593|Lnp|69605|limb and neural patterns	AK143497|Lnp|69605|limb and neural patterns	AK009311|Lnp|69605|limb and neural patterns	AK136506|Lnp|69605|limb and neural patterns	AK082900|Lnp|69605|limb and neural patterns	AK137445|Lnp|69605|limb and neural patterns	NM_001110209|Lnp|69605|limb and neural patterns	NM_027133|Lnp|69605|limb and neural patterns
mm9_v1_chr9_+_57351848_57351908	0.736792	CAGCAGG	BC083064|Rpp25|102614|ribonuclease P 25 subunit (human)	BC016085|Rpp25|102614|ribonuclease P 25 subunit (human)	NM_133982|Rpp25|102614|ribonuclease P 25 subunit (human)
mm9_v1_chr11_-_3256143_3256143	0.734022	CAGCAGG	AB012092|Limk2|16886|LIM motif-containing protein kinase 2	AB012291|Limk2|16886|LIM motif-containing protein kinase 2	NM_001034030|Limk2|16886|LIM motif-containing protein kinase 2
mm9_v1_chr10_+_57370786_57370799	0.730433	CAGCAGG	BC052351|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039050|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001190402|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	BC087894|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific
mm9_v1_chr5_-_111239017_111239099	0.729721	CAGCAGG	BC059835|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK148317|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK156534|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	BC057121|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	NM_009469|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)
mm9_v1_chr17_+_13897509_13897625	0.726558	CAGCAGG	NM_010806|Mllt4|17356|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4	AF172447|Mllt4|17356|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4	AK166398|Mllt4|17356|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4
mm9_v1_chr3_-_94819118_94819164	0.724954	CAGCAGG	AK133173|Zfp687|78266|zinc finger protein 687	AK019851|Zfp687|78266|zinc finger protein 687	NM_030074|Zfp687|78266|zinc finger protein 687
mm9_v1_chr7_+_91040481_91040625	0.723918	CAGCAGG	NM_023403|Mesdc2|67943|mesoderm development candidate 2
mm9_v1_chr11_+_67346499_67346579	0.723013	CAGCAGG	NM_008088|Gas7|14457|growth arrest specific 7	BC120528|Gas7|14457|growth arrest specific 7	BC120530|Gas7|14457|growth arrest specific 7
mm9_v1_chr15_+_54577256_54577521	0.722356	CAGCAGG	AK081944|Nov|18133|nephroblastoma overexpressed gene	AK081310|Nov|18133|nephroblastoma overexpressed gene	AK136407|Nov|18133|nephroblastoma overexpressed gene	AK155048|Nov|18133|nephroblastoma overexpressed gene	BC003774|Nov|18133|nephroblastoma overexpressed gene	NM_010930|Nov|18133|nephroblastoma overexpressed gene	X96585|Nov|18133|nephroblastoma overexpressed gene	AK039481|Nov|18133|nephroblastoma overexpressed gene	Y09257|Nov|18133|nephroblastoma overexpressed gene
mm9_v1_chr18_+_56591785_56591811	0.721149	CAGCAGG	NM_026240|Gramd3|107022|GRAM domain containing 3	AK018691|Gramd3|107022|GRAM domain containing 3	AK164050|Gramd3|107022|GRAM domain containing 3
mm9_v1_chr11_-_95936914_95937007	0.721118	CAGCAGG	BC003854|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK008191|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK009883|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	NM_001161419|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK011432|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK008998|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK011054|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK167884|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK010868|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	NM_007506|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)
mm9_v1_chr9_-_64585562_64585585	0.719947	CAGCAGG	AK014268|Rab11a|53869|RAB11a, member RAS oncogene family	AK147122|Rab11a|53869|RAB11a, member RAS oncogene family	NM_017382|Rab11a|53869|RAB11a, member RAS oncogene family
mm9_v1_chr11_+_101107635_101107647	0.715968	CAGCAGG	NM_019444|Ramp2|54409|receptor (calcitonin) activity modifying protein 2
mm9_v1_chr15_+_41662472_41662583	0.708586	CAGCAGG	NM_001130164|Oxr1|170719|oxidation resistance 1	AK014186|3110047M12Rik|73184|RIKEN cDNA 3110047M12 gene
mm9_v1_chr10_+_51953390_51953445	0.69458	CAGCAGG	AK016485|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	NM_025705|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	AK157211|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1
mm9_v1_chr13_+_55311142_55311142	0.693282	CAGCAGG	AK145783|Nsd1|18193|nuclear receptor-binding SET-domain protein 1	NM_008739|Nsd1|18193|nuclear receptor-binding SET-domain protein 1
mm9_v1_chr16_+_16896561_16896699	0.6911	CAGCAGG	AK016942|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)	NM_176833|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)	AK154192|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)	AK164964|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)
mm9_v1_chr5_+_124423632_124423689	0.687354	CAGCAGG	NM_145070|Hip1r|29816|huntingtin interacting protein 1 related	BC065101|Hip1r|29816|huntingtin interacting protein 1 related	AK014542|Hip1r|29816|huntingtin interacting protein 1 related	AK129182|Hip1r|29816|huntingtin interacting protein 1 related
mm9_v1_chr14_-_56563474_56563574	0.686891	CAGCAGG	BC139454|Cma1|17228|chymase 1, mast cell	BC139457|Cma1|17228|chymase 1, mast cell	NM_010780|Cma1|17228|chymase 1, mast cell	X68805|Cma1|17228|chymase 1, mast cell	M73760|Cma1|17228|chymase 1, mast cell
mm9_v1_chr11_-_66339627_66339627	0.684928	CAGCAGG	AK147504|Shisa6|380702|shisa homolog 6 (Xenopus laevis)	NM_001034874|Shisa6|380702|shisa homolog 6 (Xenopus laevis)
mm9_v1_chr2_+_31101302_31101442	0.675242	CAGCAGG	BC059825|Ncs1|14299|neuronal calcium sensor 1	NM_019681|Ncs1|14299|neuronal calcium sensor 1
mm9_v1_chr10_+_84849558_84849599	0.672682	CAGCAGG	BC096535|Btbd11|74007|BTB (POZ) domain containing 11	NM_028709|Btbd11|74007|BTB (POZ) domain containing 11
mm9_v1_chr10_+_126938744_126938772	0.668252	CAGCAGG	BC067208|Stac3|237611|SH3 and cysteine rich domain 3	AK036516|Stac3|237611|SH3 and cysteine rich domain 3	NM_177707|Stac3|237611|SH3 and cysteine rich domain 3
mm9_v1_chr8_+_90723069_90723153	0.666268	CAGCAGG	AK077553|Papd5|214627|PAP associated domain containing 5	NM_001164497|Papd5|214627|PAP associated domain containing 5	NM_001164498|Papd5|214627|PAP associated domain containing 5	NM_001164499|Papd5|214627|PAP associated domain containing 5	BC059053|Papd5|214627|PAP associated domain containing 5	BC144796|Papd5|214627|PAP associated domain containing 5	BC144797|Papd5|214627|PAP associated domain containing 5	BC145737|Papd5|214627|PAP associated domain containing 5
mm9_v1_chr2_+_32462471_32462603	0.665739	CAGCAGG	NM_001025310|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	NM_016973|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	AK157562|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	AK159158|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	BC036985|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	AB035123|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	BC022924|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
mm9_v1_chr8_+_112089791_112089904	0.662049	CAGCAGG	AK079533|Txnl4b|234723|thioredoxin-like 4B	NM_175646|Txnl4b|234723|thioredoxin-like 4B	AK085226|Txnl4b|234723|thioredoxin-like 4B
mm9_v1_chr17_+_33130067_33130141	0.658034	CAGCAGG	AK050612|Zfp952|240067|zinc finger protein 952	BC057593|Zfp952|240067|zinc finger protein 952	NM_001045559|Zfp952|240067|zinc finger protein 952	BC051011|Zfp952|240067|zinc finger protein 952
mm9_v1_chr1_+_55462764_55462802	0.655766	CAGCAGG	AK083136|Plcl1|227120|phospholipase C-like 1	AK161943|Plcl1|227120|phospholipase C-like 1	NM_001114663|Plcl1|227120|phospholipase C-like 1	AK135610|Plcl1|227120|phospholipase C-like 1
mm9_v1_chr9_+_99512920_99512920	0.654012	CAGCAGG	AK136425|A4gnt|333424|alpha-1,4-N-acetylglucosaminyltransferase	NM_001077424|A4gnt|333424|alpha-1,4-N-acetylglucosaminyltransferase
mm9_v1_chr7_+_56214442_56214485	0.652376	CAGCAGG	AK019901|Nav2|78286|neuron navigator 2	NM_001111016|Nav2|78286|neuron navigator 2	AK084063|Nav2|78286|neuron navigator 2	AK162444|Nav2|78286|neuron navigator 2
mm9_v1_chr1_-_127808790_127808807	0.649209	CAGCAGG	AB041649|Lypd1|72585|Ly6/Plaur domain containing 1	AK045592|Lypd1|72585|Ly6/Plaur domain containing 1	NM_145100|Lypd1|72585|Ly6/Plaur domain containing 1
mm9_v1_chr2_+_59322709_59322728	0.648981	CAGCAGG	NM_029723|Dapl1|76747|death associated protein-like 1	AK009567|Dapl1|76747|death associated protein-like 1	BC116916|Dapl1|76747|death associated protein-like 1	BC116920|Dapl1|76747|death associated protein-like 1	BC063096|Dapl1|76747|death associated protein-like 1	BC052745|Dapl1|76747|death associated protein-like 1
mm9_v1_chr2_+_91105271_91105495	0.648797	CAGCAGG	NM_001166024|Arfgap2|77038|ADP-ribosylation factor GTPase activating protein 2	NM_023854|Arfgap2|77038|ADP-ribosylation factor GTPase activating protein 2	BC005495|Arfgap2|77038|ADP-ribosylation factor GTPase activating protein 2	AK149837|Arfgap2|77038|ADP-ribosylation factor GTPase activating protein 2	EF437354|Arfgap2|77038|ADP-ribosylation factor GTPase activating protein 2	AK009565|Arfgap2|77038|ADP-ribosylation factor GTPase activating protein 2	AK169144|Arfgap2|77038|ADP-ribosylation factor GTPase activating protein 2	AF229439|Arfgap2|77038|ADP-ribosylation factor GTPase activating protein 2	AK168489|Arfgap2|77038|ADP-ribosylation factor GTPase activating protein 2
mm9_v1_chr8_+_13159112_13159277	0.648774	CAGCAGG	NM_010684|Lamp1|16783|lysosomal-associated membrane protein 1	BC049097|Lamp1|16783|lysosomal-associated membrane protein 1	AY069968|Lamp1|16783|lysosomal-associated membrane protein 1	AK172007|Lamp1|16783|lysosomal-associated membrane protein 1	AK159096|Lamp1|16783|lysosomal-associated membrane protein 1	AK004637|Lamp1|16783|lysosomal-associated membrane protein 1
mm9_v1_chr1_-_23109091_23109091	0.6483	CAGCAGG	AK016819|4933415F23Rik|66755|RIKEN cDNA 4933415F23 gene	BC115556|4933415F23Rik|66755|RIKEN cDNA 4933415F23 gene	NM_025746|4933415F23Rik|66755|RIKEN cDNA 4933415F23 gene
mm9_v1_chr7_-_106976715_106976926	0.645842	CAGCAGG	BC116892|Neu3|50877|neuraminidase 3	BC116924|Neu3|50877|neuraminidase 3	AK050428|Neu3|50877|neuraminidase 3	AK134405|Neu3|50877|neuraminidase 3	AB026842|Neu3|50877|neuraminidase 3	NM_016720|Neu3|50877|neuraminidase 3
mm9_v1_chr4_+_53727022_53727069	0.643643	CAGCAGG	AK144743|Fktn|246179|fukutin	AK052357|Fktn|246179|fukutin	AK142744|Fktn|246179|fukutin	BC017538|Fktn|246179|fukutin	AJ511807|Fktn|246179|fukutin	AB077384|Fktn|246179|fukutin	AK085931|Fktn|246179|fukutin	NM_139309|Fktn|246179|fukutin
mm9_v1_chr7_-_54856741_54856741	0.640689	CAGCAGG	AY042193|Mrgpra3|233222|MAS-related GPR, member A3	NM_153067|Mrgpra3|233222|MAS-related GPR, member A3
mm9_v1_chr15_-_84818368_84818512	0.639127	CAGCAGG	AK149782|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene	NM_001033273|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene	AK170532|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene
mm9_v1_chr15_+_76307820_76307891	0.636733	CAGCAGG	AK082507|Hsf1|15499|heat shock factor 1	AK089144|Hsf1|15499|heat shock factor 1	BC094064|Hsf1|15499|heat shock factor 1	BC013716|Hsf1|15499|heat shock factor 1	NM_008296|Hsf1|15499|heat shock factor 1	AK075651|Hsf1|15499|heat shock factor 1	X61753|Hsf1|15499|heat shock factor 1
mm9_v1_chr11_+_98219687_98219740	0.634924	CAGCAGG	NM_021547|Stard3|59045|START domain containing 3	X82457|Stard3|59045|START domain containing 3	AK041538|Stard3|59045|START domain containing 3	AK150166|Stard3|59045|START domain containing 3	AK150254|Stard3|59045|START domain containing 3
mm9_v1_chr11_+_102962999_102963023	0.634685	CAGCAGG	NM_025988|Acbd4|67131|acyl-Coenzyme A binding domain containing 4	AK079604|Acbd4|67131|acyl-Coenzyme A binding domain containing 4
mm9_v1_chr1_-_168339909_168339980	0.634398	CAGCAGG	AK031716|Pogk|71592|pogo transposable element with KRAB domain	BC072587|Pogk|71592|pogo transposable element with KRAB domain	AK048067|Pogk|71592|pogo transposable element with KRAB domain	AK048752|Pogk|71592|pogo transposable element with KRAB domain	AK053898|Pogk|71592|pogo transposable element with KRAB domain	NM_001142948|Pogk|71592|pogo transposable element with KRAB domain	NM_175170|Pogk|71592|pogo transposable element with KRAB domain
mm9_v1_chr6_+_91937103_91937154	0.627887	CAGCAGG	NM_172731|Fgd5|232237|FYVE, RhoGEF and PH domain containing 5	BC145502|Fgd5|232237|FYVE, RhoGEF and PH domain containing 5	BC150786|Fgd5|232237|FYVE, RhoGEF and PH domain containing 5
mm9_v1_chr10_+_57351786_57351901	0.627123	CAGCAGG	L02241|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039051|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_008863|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK005281|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK089677|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK083875|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK156851|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK157521|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK171359|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK156950|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific
mm9_v1_chr11_+_69579376_69579461	0.619721	CAGCAGG	AK163593|Zbtb4|75580|zinc finger and BTB domain containing 4	NM_029348|Zbtb4|75580|zinc finger and BTB domain containing 4	AK147212|Zbtb4|75580|zinc finger and BTB domain containing 4
mm9_v1_chr5_-_125659422_125659602	0.61931	CAGCAGG	AF125671|Ncor2|20602|nuclear receptor co-repressor 2	BC057218|Ncor2|20602|nuclear receptor co-repressor 2	AK147394|Ncor2|20602|nuclear receptor co-repressor 2	AF113002|Ncor2|20602|nuclear receptor co-repressor 2	NM_011424|Ncor2|20602|nuclear receptor co-repressor 2
mm9_v1_chr19_-_7557690_7557778	0.613758	CAGCAGG	BC079882|Rtn3|20168|reticulon 3	BC014697|Rtn3|20168|reticulon 3	AK075883|Rtn3|20168|reticulon 3	AK165683|Rtn3|20168|reticulon 3	AK088670|Rtn3|20168|reticulon 3	AK049845|Rtn3|20168|reticulon 3	AF195940|Rtn3|20168|reticulon 3	AK148792|Rtn3|20168|reticulon 3	AK148947|Rtn3|20168|reticulon 3	AK036892|Rtn3|20168|reticulon 3	AK032109|Rtn3|20168|reticulon 3	AY427822|Rtn3|20168|reticulon 3	AY750849|Rtn3|20168|reticulon 3	AB046114|Rtn3|20168|reticulon 3	AY164700|Rtn3|20168|reticulon 3	NM_053076|Rtn3|20168|reticulon 3	NM_001003933|Rtn3|20168|reticulon 3	NM_001003934|Rtn3|20168|reticulon 3
mm9_v1_chr2_-_38920925_38921012	0.613165	CAGCAGG	BC043090|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	NM_029793|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK028516|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	BC024637|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	BC053068|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK002954|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK008972|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK044987|Golga1|76899|golgi autoantigen, golgin subfamily a, 1
mm9_v1_chr8_+_116159485_116159734	0.612743	CAGCAGG	NM_001048143|Mon1b|270096|MON1 homolog b (yeast)	AK157390|Mon1b|270096|MON1 homolog b (yeast)	NM_173015|Mon1b|270096|MON1 homolog b (yeast)	AK030288|Mon1b|270096|MON1 homolog b (yeast)
mm9_v1_chr7_-_149088233_149088349	0.61041	CAGCAGG	AK049394|Tollip|54473|toll interacting protein	BC062139|Tollip|54473|toll interacting protein	AK045422|Tollip|54473|toll interacting protein	BC053515|Tollip|54473|toll interacting protein	AK161312|Tollip|54473|toll interacting protein	AJ242971|Tollip|54473|toll interacting protein	AK016482|Tollip|54473|toll interacting protein	NM_023764|Tollip|54473|toll interacting protein	AK078391|Tollip|54473|toll interacting protein	AK049263|Tollip|54473|toll interacting protein
mm9_v1_chr2_+_180701920_180701946	0.610285	CAGCAGG	NM_001177707|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	NM_001177708|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	NM_001177709|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	NM_001177710|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	NM_145760|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	AK145879|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1
mm9_v1_chr10_-_79076744_79076769	0.605261	CAGCAGG	BC089008|C2cd4c|237397|C2 calcium-dependent domain containing 4C	NM_198614|C2cd4c|237397|C2 calcium-dependent domain containing 4C	AK029946|C2cd4c|237397|C2 calcium-dependent domain containing 4C	NM_001168624|C2cd4c|237397|C2 calcium-dependent domain containing 4C
mm9_v1_chr2_+_180701966_180702005	0.604386	CAGCAGG	BC027794|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	BC016228|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	AK030295|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	AJ401461|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	BC052922|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	AK089321|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	AK052985|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	AK134402|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	BC059817|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	AK030520|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	NM_001177706|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1
mm9_v1_chr1_+_36568707_36568722	0.602039	CAGCAGG	NM_001039551|Cnnm3|94218|cyclin M3	NM_053186|Cnnm3|94218|cyclin M3
mm9_v1_chr19_-_37281762_37281782	0.592694	CAGCAGG	BC128377|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	AY313774|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	NM_198300|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3
mm9_v1_chr1_+_95408625_95408734	0.589676	CAGCAGG	AK171713|Farp2|227377|FERM, RhoGEF and pleckstrin domain protein 2	NM_145519|Farp2|227377|FERM, RhoGEF and pleckstrin domain protein 2	AK086699|Farp2|227377|FERM, RhoGEF and pleckstrin domain protein 2	BC009153|Farp2|227377|FERM, RhoGEF and pleckstrin domain protein 2	AK050860|Farp2|227377|FERM, RhoGEF and pleckstrin domain protein 2
mm9_v1_chr5_-_135115175_135115219	0.586788	CAGCAGG	AK169312|Eif4h|22384|eukaryotic translation initiation factor 4H	AK149841|Eif4h|22384|eukaryotic translation initiation factor 4H	AK136999|Eif4h|22384|eukaryotic translation initiation factor 4H	AK135390|Eif4h|22384|eukaryotic translation initiation factor 4H	AK166567|Eif4h|22384|eukaryotic translation initiation factor 4H	AK169353|Eif4h|22384|eukaryotic translation initiation factor 4H	NM_033561|Eif4h|22384|eukaryotic translation initiation factor 4H	AK045004|Eif4h|22384|eukaryotic translation initiation factor 4H	AK150088|Eif4h|22384|eukaryotic translation initiation factor 4H	BC014796|Eif4h|22384|eukaryotic translation initiation factor 4H	AK088818|Eif4h|22384|eukaryotic translation initiation factor 4H	AK168872|Eif4h|22384|eukaryotic translation initiation factor 4H	AK169407|Eif4h|22384|eukaryotic translation initiation factor 4H	AK132034|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr9_+_107483603_107483637	0.583799	CAGCAGG	BC018457|Hyal3|109685|hyaluronoglucosaminidase 3	NM_178020|Hyal3|109685|hyaluronoglucosaminidase 3	AY048681|Hyal3|109685|hyaluronoglucosaminidase 3
mm9_v1_chr7_+_142729505_142729604	0.583435	CAGCAGG	AK004602|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	NM_011212|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	U35368|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	BC024631|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	AK132455|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	U62387|Ptpre|19267|protein tyrosine phosphatase, receptor type, E
mm9_v1_chr7_-_108011886_108011933	0.583205	CAGCAGG	AK088621|Relt|320100|RELT tumor necrosis factor receptor	BC100310|Relt|320100|RELT tumor necrosis factor receptor	AK042363|Relt|320100|RELT tumor necrosis factor receptor	AK049073|Relt|320100|RELT tumor necrosis factor receptor	NM_177073|Relt|320100|RELT tumor necrosis factor receptor
mm9_v1_chr7_+_25315666_25315756	0.582551	CAGCAGG	NM_153134|Irgq|210146|immunity-related GTPase family, Q	BC056347|Irgq|210146|immunity-related GTPase family, Q	BC080294|Irgq|210146|immunity-related GTPase family, Q	AK051117|Irgq|210146|immunity-related GTPase family, Q
mm9_v1_chr11_-_78311204_78311255	0.580179	CAGCAGG	BC058534|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	BC080850|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	NM_001168521|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	NM_172795|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1
mm9_v1_chr8_+_124474432_124474469	0.578359	CAGCAGG	NM_001110100|Banp|53325|BTG3 associated nuclear protein	NM_016812|Banp|53325|BTG3 associated nuclear protein	BC062641|Banp|53325|BTG3 associated nuclear protein
mm9_v1_chr15_-_77759356_77759437	0.577093	CAGCAGG	AK167925|Txn2|56551|thioredoxin 2	U85089|Txn2|56551|thioredoxin 2	AK167754|Txn2|56551|thioredoxin 2	AK168322|Txn2|56551|thioredoxin 2	AK002358|Txn2|56551|thioredoxin 2	AK147164|Txn2|56551|thioredoxin 2	AK090199|Txn2|56551|thioredoxin 2	AK149855|Txn2|56551|thioredoxin 2	BC068182|Txn2|56551|thioredoxin 2	AK010917|Txn2|56551|thioredoxin 2	NM_019913|Txn2|56551|thioredoxin 2	AK160591|Txn2|56551|thioredoxin 2
mm9_v1_chr11_+_75546384_75546451	0.57695	CAGCAGG	NM_009536|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	BC058686|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK169812|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK075995|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr14_+_55502261_55502285	0.57528	CAGCAGG	AF030769|Bcl2l2|12050|BCL2-like 2	NM_007537|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr7_+_63305516_63305584	0.574341	CAGCAGG	NM_010418|Herc2|15204|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2
mm9_v1_chr8_+_81552335_81552485	0.571756	CAGCAGG	BC094552|Zfp827|622675|zinc finger protein 827	NM_178267|Zfp827|622675|zinc finger protein 827	BC151183|Zfp827|622675|zinc finger protein 827	AK154905|Zfp827|622675|zinc finger protein 827
mm9_v1_chr2_-_168415690_168415866	0.570559	CAGCAGG	AF289078|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887582|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887588|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887594|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887600|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	NM_001136073|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	U36575|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	U36576|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	NM_010899|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	BC064006|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	AK081853|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887584|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887586|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887590|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887592|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887596|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887602|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887604|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	NM_001037177|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	AK135414|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887598|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2
mm9_v1_chr7_-_26504053_26504077	0.567428	CAGCAGG	AK155466|Ccdc97|52132|coiled-coil domain containing 97	AK045509|Ccdc97|52132|coiled-coil domain containing 97	AK088221|Ccdc97|52132|coiled-coil domain containing 97	AK004762|Ccdc97|52132|coiled-coil domain containing 97	NM_028771|Ccdc97|52132|coiled-coil domain containing 97
mm9_v1_chr10_+_80217947_80217975	0.564645	CAGCAGG	AK035144|Dot1l|208266|DOT1-like, histone H3 methyltransferase (S. cerevisiae)	AY196089|Dot1l|208266|DOT1-like, histone H3 methyltransferase (S. cerevisiae)	NM_199322|Dot1l|208266|DOT1-like, histone H3 methyltransferase (S. cerevisiae)	AY376663|Dot1l|208266|DOT1-like, histone H3 methyltransferase (S. cerevisiae)
mm9_v1_chr12_+_29360060_29360071	0.564038	CAGCAGG	BC005695|Adi1|104923|acireductone dioxygenase 1	NM_134052|Adi1|104923|acireductone dioxygenase 1
mm9_v1_chr14_+_30822097_30822350	0.561754	CAGCAGG	NM_001136240|Chdh|218865|choline dehydrogenase	AK052715|Chdh|218865|choline dehydrogenase	AK087570|Chdh|218865|choline dehydrogenase	AK164042|Chdh|218865|choline dehydrogenase
mm9_v1_chr2_+_91570249_91570297	0.560511	CAGCAGG	NM_001080754|Ambra1|228361|autophagy/beclin 1 regulator 1	NM_172669|Ambra1|228361|autophagy/beclin 1 regulator 1
mm9_v1_chr11_+_72774670_72774671	0.560203	CAGCAGG	AK155904|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous	NM_001163336|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous	NM_001163337|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous	NM_016745|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous	AK089487|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous
mm9_v1_chr2_+_163428044_163428072	0.557597	CAGCAGG	AK039450|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_029512|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_181734|Ttpal|76080|tocopherol (alpha) transfer protein-like
mm9_v1_chr11_+_115265054_115265195	0.555605	CAGCAGG	BC028523|Ict1|68572|immature colon carcinoma transcript 1	BC079614|Ict1|68572|immature colon carcinoma transcript 1	AK003192|Ict1|68572|immature colon carcinoma transcript 1	NM_026729|Ict1|68572|immature colon carcinoma transcript 1	AK003286|Ict1|68572|immature colon carcinoma transcript 1
mm9_v1_chr2_-_35835071_35835146	0.554471	CAGCAGG	AM690755|Ttll11|74410|tubulin tyrosine ligase-like family, member 11	NM_028921|Ttll11|74410|tubulin tyrosine ligase-like family, member 11	NM_029774|Ttll11|74410|tubulin tyrosine ligase-like family, member 11	AK037481|Ttll11|74410|tubulin tyrosine ligase-like family, member 11
mm9_v1_chr10_+_74499810_74499858	0.554431	CAGCAGG	AK043946|Rab36|76877|RAB36, member RAS oncogene family	AK018269|Rab36|76877|RAB36, member RAS oncogene family	AK038445|Rab36|76877|RAB36, member RAS oncogene family	AK087892|Rab36|76877|RAB36, member RAS oncogene family	AK163455|Rab36|76877|RAB36, member RAS oncogene family	NM_029781|Rab36|76877|RAB36, member RAS oncogene family	BC119094|Rab36|76877|RAB36, member RAS oncogene family	BC119098|Rab36|76877|RAB36, member RAS oncogene family
mm9_v1_chr12_+_117316195_117316297	0.552338	CAGCAGG	AK038743|Vipr2|22355|vasoactive intestinal peptide receptor 2	NM_009511|Vipr2|22355|vasoactive intestinal peptide receptor 2	AK142357|Vipr2|22355|vasoactive intestinal peptide receptor 2	D28132|Vipr2|22355|vasoactive intestinal peptide receptor 2	BC138572|Vipr2|22355|vasoactive intestinal peptide receptor 2
mm9_v1_chr4_-_129118034_129118085	0.545532	CAGCAGG	BC023839|Zbtb8b|215627|zinc finger and BTB domain containing 8b	AK140914|Zbtb8b|215627|zinc finger and BTB domain containing 8b	AK163930|Zbtb8b|215627|zinc finger and BTB domain containing 8b	NM_153541|Zbtb8b|215627|zinc finger and BTB domain containing 8b
mm9_v1_chr11_+_59475986_59476013	0.544212	CAGCAGG	AK154807|Mprip|26936|myosin phosphatase Rho interacting protein	NM_012027|Mprip|26936|myosin phosphatase Rho interacting protein	NM_201245|Mprip|26936|myosin phosphatase Rho interacting protein	AK158296|Mprip|26936|myosin phosphatase Rho interacting protein	AK171089|Mprip|26936|myosin phosphatase Rho interacting protein	AK170849|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr10_-_33344405_33344571	0.541597	CAGCAGG	AK039308|Clvs2|215890|clavesin 2	NM_175448|Clvs2|215890|clavesin 2	BC058539|Clvs2|215890|clavesin 2	AK163214|Clvs2|215890|clavesin 2	AK053797|Clvs2|215890|clavesin 2	AK139868|Clvs2|215890|clavesin 2	AK139409|Clvs2|215890|clavesin 2	AK169009|Clvs2|215890|clavesin 2
mm9_v1_chr8_+_28153013_28153055	0.539644	CAGCAGG	NM_001039077|Prosc|114863|proline synthetase co-transcribed	NM_001039078|Prosc|114863|proline synthetase co-transcribed	NM_054057|Prosc|114863|proline synthetase co-transcribed	BC061045|Prosc|114863|proline synthetase co-transcribed	AK147670|Prosc|114863|proline synthetase co-transcribed
mm9_v1_chr2_-_25978328_25978339	0.539321	CAGCAGG	AK147293|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	NM_026495|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr14_-_21475760_21475766	0.537023	CAGCAGG	NM_021508|Myoz1|59011|myozenin 1
mm9_v1_chr14_+_32031041_32031060	0.536265	CAGCAGG	AK129018|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	AK137463|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	AB127607|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	NM_001025379|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	BC115440|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G
mm9_v1_chrX_+_68468175_68468259	0.535711	CAGCAGG	AK149997|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164191|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164192|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164193|Mtm1|17772|X-linked myotubular myopathy gene 1	AK171475|Mtm1|17772|X-linked myotubular myopathy gene 1	AK031794|Mtm1|17772|X-linked myotubular myopathy gene 1	AK166452|Mtm1|17772|X-linked myotubular myopathy gene 1	BC090984|Mtm1|17772|X-linked myotubular myopathy gene 1	BC051022|Mtm1|17772|X-linked myotubular myopathy gene 1	AK032870|Mtm1|17772|X-linked myotubular myopathy gene 1	BC066847|Mtm1|17772|X-linked myotubular myopathy gene 1	AF073996|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_019926|Mtm1|17772|X-linked myotubular myopathy gene 1	AK166759|Mtm1|17772|X-linked myotubular myopathy gene 1
mm9_v1_chr1_+_134314029_134314184	0.535256	CAGCAGG	NM_172516|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AK083696|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AY429676|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AK020880|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	BC130226|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AK132119|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AK172954|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AY208852|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AK145449|Dstyk|213452|dual serine/threonine and tyrosine protein kinase
mm9_v1_chr12_-_93024875_93024875	0.53439	CAGCAGG	AK036612|Ston2|108800|stonin 2	NM_175367|Ston2|108800|stonin 2
mm9_v1_chr18_-_34879873_34880040	0.532262	CAGCAGG	AF020305|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3	AB008833|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3	AF041842|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3	AF036163|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3	AF051766|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3	Y15110|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3	AK046542|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3	BC066202|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3	NM_010280|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3
mm9_v1_chr5_-_76374399_76374520	0.530976	CAGCAGG	X59397|Kdr|16542|kinase insert domain protein receptor	BC020530|Kdr|16542|kinase insert domain protein receptor	NM_010612|Kdr|16542|kinase insert domain protein receptor	S53103|Kdr|16542|kinase insert domain protein receptor	AK141938|Kdr|16542|kinase insert domain protein receptor	EU884114|Kdr|16542|kinase insert domain protein receptor	AK054510|Kdr|16542|kinase insert domain protein receptor
mm9_v1_chr9_+_119354040_119354104	0.530238	CAGCAGG	NM_001172136|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	NM_172456|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	AK148426|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	AK028887|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	AK051300|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	AK162566|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	AK163555|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	BC119024|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	BC144729|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	AK034654|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	BC094589|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	BC052171|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	BC059920|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	BC064730|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like
mm9_v1_chr4_-_115612507_115612530	0.529449	CAGCAGG	BC050912|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	AB037698|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	AF448118|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	AK141654|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	NM_001025567|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	NM_130865|Dmbx1|140477|diencephalon/mesencephalon homeobox 1
mm9_v1_chr19_-_46470175_46470258	0.527688	CAGCAGG	BC007131|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK010632|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AB010297|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	NM_016860|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK019518|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK168889|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK088062|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK167450|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK162248|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
mm9_v1_chr2_-_154233754_154233847	0.525861	CAGCAGG	BC018546|Snta1|20648|syntrophin, acidic 1	U00677|Snta1|20648|syntrophin, acidic 1	AK137379|Snta1|20648|syntrophin, acidic 1	NM_009228|Snta1|20648|syntrophin, acidic 1
mm9_v1_chr1_-_14908915_14908942	0.524622	CAGCAGG	AY231177|Trpa1|277328|transient receptor potential cation channel, subfamily A, member 1	BC120563|Trpa1|277328|transient receptor potential cation channel, subfamily A, member 1	BC131963|Trpa1|277328|transient receptor potential cation channel, subfamily A, member 1	AK045771|Trpa1|277328|transient receptor potential cation channel, subfamily A, member 1	NM_177781|Trpa1|277328|transient receptor potential cation channel, subfamily A, member 1
mm9_v1_chr10_+_57365674_57365674	0.521248	CAGCAGG	BC061162|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039052|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039053|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific
mm9_v1_chr13_-_35011860_35011863	0.517941	CAGCAGG	NM_027967|1700026J04Rik|71864|RIKEN cDNA 1700026J04 gene	AK139828|1700026J04Rik|71864|RIKEN cDNA 1700026J04 gene
mm9_v1_chr18_-_36925819_36925867	0.514227	CAGCAGG	AY321066|Dnd1|213236|dead end homolog 1 (zebrafish)	AK141343|Dnd1|213236|dead end homolog 1 (zebrafish)	BC034897|Dnd1|213236|dead end homolog 1 (zebrafish)	NM_173383|Dnd1|213236|dead end homolog 1 (zebrafish)
mm9_v1_chr7_+_6124083_6124158	0.510838	CAGCAGG	BC023396|Zfp444|72667|zinc finger protein 444	AK169973|Zfp444|72667|zinc finger protein 444	AK018079|Zfp444|72667|zinc finger protein 444	NM_001146024|Zfp444|72667|zinc finger protein 444	NM_028316|Zfp444|72667|zinc finger protein 444	AK089886|Zfp444|72667|zinc finger protein 444	BC037180|Zfp444|72667|zinc finger protein 444	BC139359|Zfp444|72667|zinc finger protein 444	BC139361|Zfp444|72667|zinc finger protein 444
mm9_v1_chr8_-_91568060_91568092	0.506062	CAGCAGG	BC062937|Sall1|58198|sal-like 1 (Drosophila)	NM_021390|Sall1|58198|sal-like 1 (Drosophila)
mm9_v1_chr17_-_26056379_26056705	0.503798	CAGCAGG	AB232639|Rab40c|224624|Rab40c, member RAS oncogene family	AF422144|Rab40c|224624|Rab40c, member RAS oncogene family	BC037461|Rab40c|224624|Rab40c, member RAS oncogene family	BC027008|Rab40c|224624|Rab40c, member RAS oncogene family	NM_139154|Rab40c|224624|Rab40c, member RAS oncogene family
mm9_v1_chr5_+_34916343_34916517	0.503054	CAGCAGG	NM_001024458|Add1|11518|adducin 1 (alpha)	NM_001102444|Add1|11518|adducin 1 (alpha)	NM_013457|Add1|11518|adducin 1 (alpha)	AF096839|Add1|11518|adducin 1 (alpha)	AK079960|Add1|11518|adducin 1 (alpha)	AK054558|Add1|11518|adducin 1 (alpha)
mm9_v1_chr3_+_92211912_92211941	0.502586	CAGCAGG	AY158993|Sprr2i|20763|small proline-rich protein 2I	NM_011475|Sprr2i|20763|small proline-rich protein 2I	BC120622|Sprr2i|20763|small proline-rich protein 2I
mm9_v1_chr11_-_95926589_95926740	0.498249	CAGCAGG	AK077793|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	AK149770|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	NM_172300|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)
mm9_v1_chr19_+_46227039_46227050	0.497762	CAGCAGG	BC076569|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1	NM_178930|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1
mm9_v1_chr4_-_135528494_135528534	0.497222	CAGCAGG	AK167478|Lypla2|26394|lysophospholipase 2	AK089112|Lypla2|26394|lysophospholipase 2	AK075590|Lypla2|26394|lysophospholipase 2	AB009653|Lypla2|26394|lysophospholipase 2	NM_011942|Lypla2|26394|lysophospholipase 2	BC068120|Lypla2|26394|lysophospholipase 2
mm9_v1_chr5_+_23870625_23870649	0.496624	CAGCAGG	AK158106|Nos3|18127|nitric oxide synthase 3, endothelial cell	AK077896|Nos3|18127|nitric oxide synthase 3, endothelial cell	NM_008713|Nos3|18127|nitric oxide synthase 3, endothelial cell	U53142|Nos3|18127|nitric oxide synthase 3, endothelial cell	BC052636|Nos3|18127|nitric oxide synthase 3, endothelial cell
mm9_v1_chr9_+_46076689_46076697	0.495191	CAGCAGG	AF327059|Apoa5|66113|apolipoprotein A-V	NM_080434|Apoa5|66113|apolipoprotein A-V
mm9_v1_chr18_-_10610315_10610349	0.493509	CAGCAGG	AK145333|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	NM_001081222|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm9_v1_chr18_+_11997728_11997798	0.493086	CAGCAGG	AK156273|Cables1|63955|CDK5 and Abl enzyme substrate 1	AF133208|Cables1|63955|CDK5 and Abl enzyme substrate 1	NM_001146287|Cables1|63955|CDK5 and Abl enzyme substrate 1	NM_022021|Cables1|63955|CDK5 and Abl enzyme substrate 1	BC145142|Cables1|63955|CDK5 and Abl enzyme substrate 1	BC150714|Cables1|63955|CDK5 and Abl enzyme substrate 1
mm9_v1_chr9_+_121669121_121669172	0.492979	CAGCAGG	NM_001166644|Zfp651|270210|zinc finger protein 651
mm9_v1_chr17_+_44325518_44325614	0.488115	CAGCAGG	NM_172621|Clic5|224796|chloride intracellular channel 5	AK046522|Clic5|224796|chloride intracellular channel 5	BC064037|Clic5|224796|chloride intracellular channel 5	AK017800|Clic5|224796|chloride intracellular channel 5
mm9_v1_chrX_+_99044723_99044723	0.487202	CAGCAGG	AK142977|Nhsl2|100042480|NHS-like 2	NM_001163610|Nhsl2|100042480|NHS-like 2
mm9_v1_chr15_+_99556048_99556119	0.483578	CAGCAGG	NM_183256|2310016M24Rik|66379|RIKEN cDNA 2310016M24 gene	AK009401|2310016M24Rik|66379|RIKEN cDNA 2310016M24 gene	BC059905|2310016M24Rik|66379|RIKEN cDNA 2310016M24 gene
mm9_v1_chr7_-_54609609_54609609	0.482628	CAGCAGG	AY042191|Mrgpra1|233221|MAS-related GPR, member A1	NM_153095|Mrgpra1|233221|MAS-related GPR, member A1
mm9_v1_chr4_+_136025675_136025745	0.482062	CAGCAGG	AK139583|Luzp1|269593|leucine zipper protein 1	NM_024452|Luzp1|269593|leucine zipper protein 1	AK012514|Luzp1|269593|leucine zipper protein 1	BC026746|Luzp1|269593|leucine zipper protein 1
mm9_v1_chr2_+_91043016_91043106	0.481552	CAGCAGG	NM_007387|Acp2|11432|acid phosphatase 2, lysosomal	AK170658|Acp2|11432|acid phosphatase 2, lysosomal	AK133756|Acp2|11432|acid phosphatase 2, lysosomal	AK154269|Acp2|11432|acid phosphatase 2, lysosomal	AK128963|Acp2|11432|acid phosphatase 2, lysosomal	BC013495|Acp2|11432|acid phosphatase 2, lysosomal	AK089401|Acp2|11432|acid phosphatase 2, lysosomal	BC023343|Acp2|11432|acid phosphatase 2, lysosomal	X57199|Acp2|11432|acid phosphatase 2, lysosomal
mm9_v1_chr10_+_126703317_126703496	0.478645	CAGCAGG	NM_001190453|Dctn2|69654|dynactin 2	NM_001190454|Dctn2|69654|dynactin 2	NM_027151|Dctn2|69654|dynactin 2	AK081785|Dctn2|69654|dynactin 2	AK054390|Dctn2|69654|dynactin 2	AK164021|Dctn2|69654|dynactin 2	AK144464|Dctn2|69654|dynactin 2	AK144505|Dctn2|69654|dynactin 2	BC004613|Dctn2|69654|dynactin 2
mm9_v1_chr15_-_36724292_36724292	0.476179	CAGCAGG	NM_011740|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr9_-_46043339_46043387	0.474797	CAGCAGG	BC021776|Apoc3|11814|apolipoprotein C-III	AK002908|Apoc3|11814|apolipoprotein C-III	NM_023114|Apoc3|11814|apolipoprotein C-III	L04150|Apoc3|11814|apolipoprotein C-III	AK008260|Apoc3|11814|apolipoprotein C-III
mm9_v1_chr17_-_24787217_24787278	0.469519	CAGCAGG	AB026489|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	BC070458|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK169007|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK170057|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK039491|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK004710|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK075800|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK075813|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK084801|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	NM_023055|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm9_v1_chr17_+_21787557_21787638	0.469348	CAGCAGG	NM_001166497|3110052M02Rik|73229|RIKEN cDNA 3110052M02 gene	AK014206|3110052M02Rik|73229|RIKEN cDNA 3110052M02 gene	AK155999|3110052M02Rik|73229|RIKEN cDNA 3110052M02 gene	AK161479|3110052M02Rik|73229|RIKEN cDNA 3110052M02 gene	AK084271|3110052M02Rik|73229|RIKEN cDNA 3110052M02 gene	AK148845|3110052M02Rik|73229|RIKEN cDNA 3110052M02 gene
mm9_v1_chr9_-_122775060_122775123	0.469129	CAGCAGG	BC099930|Zfp445|235682|zinc finger protein 445	NM_173364|Zfp445|235682|zinc finger protein 445
mm9_v1_chr7_-_91558468_91558528	0.466774	CAGCAGG	BC054546|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2	NM_007488|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2
mm9_v1_chr6_+_28430311_28430460	0.4655	CAGCAGG	AK133837|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	NM_019776|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK167576|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK159837|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK088028|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK161591|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AB021491|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK034914|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK162432|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	BC007126|Snd1|56463|staphylococcal nuclease and tudor domain containing 1
mm9_v1_chr14_+_28242002_28242052	0.464305	CAGCAGG	AK016751|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	AK044563|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	NM_001114879|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	NM_028945|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed
mm9_v1_chr1_-_72583137_72583137	0.460703	CAGCAGG	BC098191|March4|381270|membrane-associated ring finger (C3HC4) 4	NM_001045533|March4|381270|membrane-associated ring finger (C3HC4) 4
mm9_v1_chr6_+_30351902_30351953	0.459194	CAGCAGG	AK172923|Klhdc10|76788|kelch domain containing 10	BC060132|Klhdc10|76788|kelch domain containing 10	NM_029742|Klhdc10|76788|kelch domain containing 10	AK039732|Klhdc10|76788|kelch domain containing 10	AK053834|Klhdc10|76788|kelch domain containing 10	AK085130|Klhdc10|76788|kelch domain containing 10
mm9_v1_chr6_-_29330414_29330512	0.458507	CAGCAGG	U49720|Opn1sw|12057|opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)	BC050002|Opn1sw|12057|opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)	BC058267|Opn1sw|12057|opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)	AF190670|Opn1sw|12057|opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)	BC026021|Opn1sw|12057|opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)	NM_007538|Opn1sw|12057|opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)
mm9_v1_chr15_+_79059603_79059603	0.455437	CAGCAGG	NM_008837|Pick1|18693|protein interacting with C kinase 1
mm9_v1_chr11_+_49477111_49477127	0.453548	CAGCAGG	AF313456|Scgb3a1|68662|secretoglobin, family 3A, member 1	AF313457|Scgb3a1|68662|secretoglobin, family 3A, member 1	NM_054037|Scgb3a1|68662|secretoglobin, family 3A, member 1	NM_170727|Scgb3a1|68662|secretoglobin, family 3A, member 1	AK003988|Scgb3a1|68662|secretoglobin, family 3A, member 1	BC086910|Scgb3a1|68662|secretoglobin, family 3A, member 1	AF436840|Scgb3a1|68662|secretoglobin, family 3A, member 1
mm9_v1_chr9_+_88442857_88443020	0.453018	CAGCAGG	AK015179|Zfp949|71640|zinc finger protein 949	NM_001142943|Zfp949|71640|zinc finger protein 949	NM_001163061|Zfp949|71640|zinc finger protein 949	AK161903|Zfp949|71640|zinc finger protein 949	BC141009|Zfp949|71640|zinc finger protein 949	BC141010|Zfp949|71640|zinc finger protein 949
mm9_v1_chr15_-_98593505_98593647	0.452789	CAGCAGG	D87900|Arf3|11842|ADP-ribosylation factor 3	BC014778|Arf3|11842|ADP-ribosylation factor 3	NM_007478|Arf3|11842|ADP-ribosylation factor 3	AK171354|Arf3|11842|ADP-ribosylation factor 3	BC024935|Arf3|11842|ADP-ribosylation factor 3	AK154948|Arf3|11842|ADP-ribosylation factor 3	AK165176|Arf3|11842|ADP-ribosylation factor 3	AK151296|Arf3|11842|ADP-ribosylation factor 3
mm9_v1_chr16_+_32914183_32914232	0.452577	CAGCAGG	AK155550|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	NM_001081255|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	AK076529|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC151058|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC157924|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC172144|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	AK133482|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3
mm9_v1_chr9_-_121748578_121748578	0.449825	CAGCAGG	NM_028384|Ccdc13|434446|coiled-coil domain containing 13
mm9_v1_chr2_-_178149153_178149214	0.449209	CAGCAGG	NM_001085501|Ppp1r3d|228966|protein phosphatase 1, regulatory subunit 3D
mm9_v1_chr1_+_158488917_158488917	0.448321	CAGCAGG	NM_001136104|Abl2|11352|v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)	NM_009595|Abl2|11352|v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)
mm9_v1_chr10_+_75911825_75911888	0.446447	CAGCAGG	NM_029816|2610028H24Rik|76964|RIKEN cDNA 2610028H24 gene	AK011591|2610028H24Rik|76964|RIKEN cDNA 2610028H24 gene	BC051454|2610028H24Rik|76964|RIKEN cDNA 2610028H24 gene
mm9_v1_chr14_+_70953862_70953862	0.44416	CAGCAGG	BC049182|Hr|15460|hairless	NM_021877|Hr|15460|hairless
mm9_v1_chr7_-_54744926_54744955	0.442867	CAGCAGG	BC064040|Mrgpra2a|668727|MAS-related GPR, member A2A	NM_153101|Mrgpra2b|235712|MAS-related GPR, member A2B	AK156116|Mrgpra2b|235712|MAS-related GPR, member A2B
mm9_v1_chr19_+_42245036_42245077	0.442555	CAGCAGG	NM_001164531|Zfyve27|319740|zinc finger, FYVE domain containing 27	NM_177319|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr9_-_108208272_108208302	0.441942	CAGCAGG	BC019397|Tcta|102791|T-cell leukemia translocation altered gene	NM_133986|Tcta|102791|T-cell leukemia translocation altered gene
mm9_v1_chr7_+_107621474_107621532	0.440719	CAGCAGG	BC098234|Ucp3|22229|uncoupling protein 3 (mitochondrial, proton carrier)	AB010742|Ucp3|22229|uncoupling protein 3 (mitochondrial, proton carrier)	NM_009464|Ucp3|22229|uncoupling protein 3 (mitochondrial, proton carrier)	BC055901|Ucp3|22229|uncoupling protein 3 (mitochondrial, proton carrier)	AF032902|Ucp3|22229|uncoupling protein 3 (mitochondrial, proton carrier)	AF053352|Ucp3|22229|uncoupling protein 3 (mitochondrial, proton carrier)
mm9_v1_chr1_-_190831705_190831735	0.437657	CAGCAGG	BC079581|Kctd3|226823|potassium channel tetramerisation domain containing 3	BC061458|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK049362|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK034380|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK087865|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK139700|Kctd3|226823|potassium channel tetramerisation domain containing 3	NM_172650|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK033491|Kctd3|226823|potassium channel tetramerisation domain containing 3
mm9_v1_chr17_+_26852581_26852657	0.435425	CAGCAGG	AK030092|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	NM_029870|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK044760|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK020796|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132423|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132454|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene
mm9_v1_chr1_+_88600370_88600431	0.434649	CAGCAGG	AK050762|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	NM_001172157|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	NM_153530|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	AK079867|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	AK031180|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	AK029652|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	AK040613|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	BC036177|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2
mm9_v1_chr6_+_88674697_88674748	0.431268	CAGCAGG	NM_001166250|Mgll|23945|monoglyceride lipase	NM_001166251|Mgll|23945|monoglyceride lipase	AK006949|Mgll|23945|monoglyceride lipase
mm9_v1_chr4_-_138648762_138648917	0.427791	CAGCAGG	BC099856|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1	BC099857|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1	BC099858|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1	D50263|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1	AK167311|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1	AK133787|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1	AK146535|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1	NM_008675|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1	AK158008|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1
mm9_v1_chr15_-_78633301_78633471	0.422713	CAGCAGG	BC060203|Card10|105844|caspase recruitment domain family, member 10	NM_130859|Card10|105844|caspase recruitment domain family, member 10
mm9_v1_chr2_-_120676125_120676339	0.421905	CAGCAGG	AK046978|Ttbk2|140810|tau tubulin kinase 2	AK053820|Ttbk2|140810|tau tubulin kinase 2	AK137024|Ttbk2|140810|tau tubulin kinase 2	AK148269|Ttbk2|140810|tau tubulin kinase 2	NM_001024856|Ttbk2|140810|tau tubulin kinase 2	NM_001024857|Ttbk2|140810|tau tubulin kinase 2	NM_080788|Ttbk2|140810|tau tubulin kinase 2	AK077011|Ttbk2|140810|tau tubulin kinase 2
mm9_v1_chr6_-_58974400_58974495	0.420484	CAGCAGG	BC005554|Fam13a|58909|family with sequence similarity 13, member A	BC060978|Fam13a|58909|family with sequence similarity 13, member A	AK052421|Fam13a|58909|family with sequence similarity 13, member A	BC054053|Fam13a|58909|family with sequence similarity 13, member A	AJ510136|Fam13a|58909|family with sequence similarity 13, member A	AK054311|Fam13a|58909|family with sequence similarity 13, member A	BC080861|Fam13a|58909|family with sequence similarity 13, member A	NM_153574|Fam13a|58909|family with sequence similarity 13, member A
mm9_v1_chr7_-_54707508_54707537	0.417376	CAGCAGG	BC064040|Mrgpra2a|668727|MAS-related GPR, member A2A	NM_001172588|Mrgpra2a|668727|MAS-related GPR, member A2A	AK156116|Mrgpra2b|235712|MAS-related GPR, member A2B
mm9_v1_chr17_+_89025866_89025960	0.416111	CAGCAGG	NM_029858|Ston1|77057|stonin 1	AK029959|Ston1|77057|stonin 1	AK029878|Ston1|77057|stonin 1	AK014958|Ston1|77057|stonin 1
mm9_v1_chr11_+_70658261_70658270	0.414924	CAGCAGG	AK134587|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	NM_019400|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1
mm9_v1_chr17_-_24278482_24278583	0.411034	CAGCAGG	AK165564|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AF126294|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK149162|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	BC146001|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	BC146003|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AF079535|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK149289|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AF086625|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK162677|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK143283|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK147835|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK147149|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	NM_001080773|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	NM_011062|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1
mm9_v1_chr11_+_61022240_61022343	0.407697	CAGCAGG	AK144241|Aldh3a1|11670|aldehyde dehydrogenase family 3, subfamily A1	NM_001112725|Aldh3a1|11670|aldehyde dehydrogenase family 3, subfamily A1	NM_007436|Aldh3a1|11670|aldehyde dehydrogenase family 3, subfamily A1	U12785|Aldh3a1|11670|aldehyde dehydrogenase family 3, subfamily A1	AF072815|Aldh3a1|11670|aldehyde dehydrogenase family 3, subfamily A1	BC144946|Aldh3a1|11670|aldehyde dehydrogenase family 3, subfamily A1	BC150677|Aldh3a1|11670|aldehyde dehydrogenase family 3, subfamily A1
mm9_v1_chr13_+_98011057_98011069	0.405884	CAGCAGG	AK132173|Enc1|13803|ectodermal-neural cortex 1	NM_007930|Enc1|13803|ectodermal-neural cortex 1	AK044906|Enc1|13803|ectodermal-neural cortex 1	AK049187|Enc1|13803|ectodermal-neural cortex 1
mm9_v1_chr17_-_26078825_26078928	0.404995	CAGCAGG	AK155173|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK016852|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK137390|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK033349|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK170431|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AB008895|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	BC014287|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	NM_011822|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK163680|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK169284|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q
mm9_v1_chr14_-_65716932_65716942	0.40193	CAGCAGG	NM_018788|Extl3|54616|exostoses (multiple)-like 3
mm9_v1_chr7_-_116637251_116637251	0.401013	CAGCAGG	AK147559|Trim66|330627|tripartite motif-containing 66	NM_001170913|Trim66|330627|tripartite motif-containing 66
mm9_v1_chr7_-_147234897_147234986	0.39367	CAGCAGG	AB221640|Msx3|17703|homeobox, msh-like 3	BC051983|Msx3|17703|homeobox, msh-like 3	BC137577|Msx3|17703|homeobox, msh-like 3	BC137578|Msx3|17703|homeobox, msh-like 3	U62523|Msx3|17703|homeobox, msh-like 3	AK012208|Msx3|17703|homeobox, msh-like 3	AK012556|Msx3|17703|homeobox, msh-like 3	NM_010836|Msx3|17703|homeobox, msh-like 3
mm9_v1_chr16_+_35983402_35983472	0.388575	CAGCAGG	AK169464|Kpna1|16646|karyopherin (importin) alpha 1	AK169311|Kpna1|16646|karyopherin (importin) alpha 1	AK169348|Kpna1|16646|karyopherin (importin) alpha 1	AK028307|Kpna1|16646|karyopherin (importin) alpha 1	AK154800|Kpna1|16646|karyopherin (importin) alpha 1	AK028259|Kpna1|16646|karyopherin (importin) alpha 1	NM_008465|Kpna1|16646|karyopherin (importin) alpha 1	U20619|Kpna1|16646|karyopherin (importin) alpha 1	BC006771|Kpna1|16646|karyopherin (importin) alpha 1
mm9_v1_chr9_+_54765084_54765153	0.386872	CAGCAGG	AK085527|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK162425|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	NM_177351|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK138851|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK083218|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK142509|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK163926|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK048771|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	BC038618|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK087279|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1
mm9_v1_chr11_+_72974015_72974031	0.382784	CAGCAGG	AF333331|P2rx5|94045|purinergic receptor P2X, ligand-gated ion channel, 5	BC138189|P2rx5|94045|purinergic receptor P2X, ligand-gated ion channel, 5	BC145181|P2rx5|94045|purinergic receptor P2X, ligand-gated ion channel, 5	NM_033321|P2rx5|94045|purinergic receptor P2X, ligand-gated ion channel, 5
mm9_v1_chr2_+_26934862_26934948	0.382723	CAGCAGG	AK156991|Adamtsl2|77794|ADAMTS-like 2	AB096928|Adamtsl2|77794|ADAMTS-like 2	NM_029981|Adamtsl2|77794|ADAMTS-like 2	BC128568|Adamtsl2|77794|ADAMTS-like 2	BC129984|Adamtsl2|77794|ADAMTS-like 2
mm9_v1_chr5_+_130620730_130620855	0.381271	CAGCAGG	AK162568|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK083583|Kctd7|212919|potassium channel tetramerisation domain containing 7	NM_172509|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK029942|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK034583|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK140606|Kctd7|212919|potassium channel tetramerisation domain containing 7	BC139070|Kctd7|212919|potassium channel tetramerisation domain containing 7	BC141201|Kctd7|212919|potassium channel tetramerisation domain containing 7
mm9_v1_chr2_+_30247921_30247956	0.380277	CAGCAGG	AB030189|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	AK002544|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	AK044141|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	AK088065|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	NM_020329|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	AK053923|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	BC026544|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1
mm9_v1_chr10_-_42303392_42303437	0.37886	CAGCAGG	NM_152229|Nr2e1|21907|nuclear receptor subfamily 2, group E, member 1	AK132201|Nr2e1|21907|nuclear receptor subfamily 2, group E, member 1	S77482|Nr2e1|21907|nuclear receptor subfamily 2, group E, member 1	BC057104|Nr2e1|21907|nuclear receptor subfamily 2, group E, member 1
mm9_v1_chr2_+_172825609_172825642	0.376329	CAGCAGG	BC060072|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	AK079383|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	NM_175112|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)
mm9_v1_chr9_-_99258896_99258975	0.373495	CAGCAGG	BC118967|Esyt3|272636|extended synaptotagmin-like protein 3	AK220532|Esyt3|272636|extended synaptotagmin-like protein 3	AK086367|Esyt3|272636|extended synaptotagmin-like protein 3	NM_177775|Esyt3|272636|extended synaptotagmin-like protein 3	AK142948|Esyt3|272636|extended synaptotagmin-like protein 3
mm9_v1_chr6_-_144997311_144997331	0.370023	CAGCAGG	AK036309|Bcat1|12035|branched chain aminotransferase 1, cytosolic	NM_001024468|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr17_+_79315805_79315867	0.367643	CAGCAGG	NM_001177402|1110001A16Rik|68554|RIKEN cDNA 1110001A16 gene	NM_001177403|1110001A16Rik|68554|RIKEN cDNA 1110001A16 gene	AK003199|1110001A16Rik|68554|RIKEN cDNA 1110001A16 gene	AK027910|1110001A16Rik|68554|RIKEN cDNA 1110001A16 gene
mm9_v1_chr17_+_26250190_26250324	0.366187	CAGCAGG	AK044384|Tmem8|60455|transmembrane protein 8 (five membrane-spanning domains)	NM_021793|Tmem8|60455|transmembrane protein 8 (five membrane-spanning domains)	AB045293|Tmem8|60455|transmembrane protein 8 (five membrane-spanning domains)
mm9_v1_chr18_-_81130721_81130824	0.364136	CAGCAGG	BC057000|Atp9b|50771|ATPase, class II, type 9B	BC079626|Atp9b|50771|ATPase, class II, type 9B	AK044331|Atp9b|50771|ATPase, class II, type 9B	AK166562|Atp9b|50771|ATPase, class II, type 9B	NM_015805|Atp9b|50771|ATPase, class II, type 9B
mm9_v1_chr3_-_9004404_9004540	0.363194	CAGCAGG	U44426|Tpd52|21985|tumor protein D52	BC004068|Tpd52|21985|tumor protein D52	AK171050|Tpd52|21985|tumor protein D52	AK170725|Tpd52|21985|tumor protein D52	AK168379|Tpd52|21985|tumor protein D52	BC094018|Tpd52|21985|tumor protein D52	AK150935|Tpd52|21985|tumor protein D52	AK151471|Tpd52|21985|tumor protein D52	AK151744|Tpd52|21985|tumor protein D52	AK152543|Tpd52|21985|tumor protein D52	AK153266|Tpd52|21985|tumor protein D52	AK161753|Tpd52|21985|tumor protein D52	AK032111|Tpd52|21985|tumor protein D52	AK168817|Tpd52|21985|tumor protein D52	AK153292|Tpd52|21985|tumor protein D52	AK005456|Tpd52|21985|tumor protein D52	BC002036|Tpd52|21985|tumor protein D52	AK169751|Tpd52|21985|tumor protein D52	NM_001025263|Tpd52|21985|tumor protein D52	NM_001025264|Tpd52|21985|tumor protein D52	NM_009412|Tpd52|21985|tumor protein D52
mm9_v1_chr5_+_123794456_123794498	0.360555	CAGCAGG	NM_029850|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK086803|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK044782|Bcl7a|77045|B-cell CLL/lymphoma 7A
mm9_v1_chr8_-_75094915_75095130	0.359723	CAGCAGG	BC037511|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK152451|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK152748|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK035786|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK151539|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	NM_172396|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AF140607|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	BC055692|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK009731|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK148562|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK149156|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK169625|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK018610|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	BC060963|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK206814|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene
mm9_v1_chr9_+_96096690_96096766	0.358011	CAGCAGG	AK044784|Tfdp2|211586|transcription factor Dp 2	NM_001184706|Tfdp2|211586|transcription factor Dp 2	NM_001184708|Tfdp2|211586|transcription factor Dp 2	NM_178667|Tfdp2|211586|transcription factor Dp 2	AK029055|Tfdp2|211586|transcription factor Dp 2	AK053881|Tfdp2|211586|transcription factor Dp 2	AK162972|Tfdp2|211586|transcription factor Dp 2	AK079624|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr11_+_118338269_118338301	0.355398	CAGCAGG	AK048667|Engase|217364|endo-beta-N-acetylglucosaminidase	BC120923|Engase|217364|endo-beta-N-acetylglucosaminidase	BC120924|Engase|217364|endo-beta-N-acetylglucosaminidase	NM_172573|Engase|217364|endo-beta-N-acetylglucosaminidase	AK084254|Engase|217364|endo-beta-N-acetylglucosaminidase	BC060640|Engase|217364|endo-beta-N-acetylglucosaminidase	AK167142|Engase|217364|endo-beta-N-acetylglucosaminidase
mm9_v1_chr10_+_79422870_79422988	0.354421	CAGCAGG	AK087505|Wdr18|216156|WD repeat domain 18	AK133716|Wdr18|216156|WD repeat domain 18	BC095984|Wdr18|216156|WD repeat domain 18	NM_175450|Wdr18|216156|WD repeat domain 18	AK032251|Wdr18|216156|WD repeat domain 18	AK050106|Wdr18|216156|WD repeat domain 18	AK160713|Wdr18|216156|WD repeat domain 18	AK163465|Wdr18|216156|WD repeat domain 18	AK166113|Wdr18|216156|WD repeat domain 18	AK168691|Wdr18|216156|WD repeat domain 18	AK082695|Wdr18|216156|WD repeat domain 18
mm9_v1_chr17_+_28046196_28046431	0.351925	CAGCAGG	BC050847|Anks1|224650|ankyrin repeat and SAM domain containing 1	NM_181413|Anks1|224650|ankyrin repeat and SAM domain containing 1	AK129094|Anks1|224650|ankyrin repeat and SAM domain containing 1	AK147273|Anks1|224650|ankyrin repeat and SAM domain containing 1
mm9_v1_chr5_-_141178229_141178331	0.350221	CAGCAGG	AK029333|Iqce|74239|IQ motif containing E	BC059223|Iqce|74239|IQ motif containing E	NM_028833|Iqce|74239|IQ motif containing E
mm9_v1_chr11_-_88579517_88579542	0.348491	CAGCAGG	AK156439|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049637|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049688|Msi2|76626|Musashi homolog 2 (Drosophila)	NM_054043|Msi2|76626|Musashi homolog 2 (Drosophila)
mm9_v1_chr2_-_25947915_25947915	0.344267	CAGCAGG	NM_001037098|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chrX_+_82819294_82819360	0.341872	CAGCAGG	AK220185|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3	NM_025729|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm9_v1_chr7_+_149684731_149684776	0.341617	CAGCAGG	L49466|Tnnt3|21957|troponin T3, skeletal, fast	L49467|Tnnt3|21957|troponin T3, skeletal, fast	L49468|Tnnt3|21957|troponin T3, skeletal, fast	L49469|Tnnt3|21957|troponin T3, skeletal, fast	L49470|Tnnt3|21957|troponin T3, skeletal, fast	L49471|Tnnt3|21957|troponin T3, skeletal, fast	L49472|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163664|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163665|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163666|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163667|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163668|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163669|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163670|Tnnt3|21957|troponin T3, skeletal, fast	NM_011620|Tnnt3|21957|troponin T3, skeletal, fast	U77779|Tnnt3|21957|troponin T3, skeletal, fast	BC003747|Tnnt3|21957|troponin T3, skeletal, fast	AK003147|Tnnt3|21957|troponin T3, skeletal, fast
mm9_v1_chrX_-_137077639_137077729	0.340535	CAGCAGG	BC028813|Tsc22d3|14605|TSC22 domain family, member 3	AF201288|Tsc22d3|14605|TSC22 domain family, member 3	AF024519|Tsc22d3|14605|TSC22 domain family, member 3	AK083389|Tsc22d3|14605|TSC22 domain family, member 3	NM_010286|Tsc22d3|14605|TSC22 domain family, member 3	AK144196|Tsc22d3|14605|TSC22 domain family, member 3
mm9_v1_chr12_+_82960953_82961016	0.340327	CAGCAGG	NM_018814|Pcnx|54604|pecanex homolog (Drosophila)
mm9_v1_chr1_-_43155380_43155481	0.340141	CAGCAGG	BC138866|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	BC138867|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	BC072608|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	NM_001013025|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	AK051333|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1
mm9_v1_chr11_-_94644016_94644016	0.339602	CAGCAGG	AK139848|Tmem92-ps|544806|transmembrane protein 92, pseudogene	NM_001034896|Tmem92-ps|544806|transmembrane protein 92, pseudogene
mm9_v1_chr18_+_35989376_35989483	0.339082	CAGCAGG	AK005364|Cxxc5|67393|CXXC finger 5	BC089314|Cxxc5|67393|CXXC finger 5	NM_133687|Cxxc5|67393|CXXC finger 5
mm9_v1_chr2_-_181333786_181333936	0.338254	CAGCAGG	AK053884|Samd10|229011|sterile alpha motif domain containing 10	AK053048|Samd10|229011|sterile alpha motif domain containing 10	BC052921|Samd10|229011|sterile alpha motif domain containing 10	NM_172676|Samd10|229011|sterile alpha motif domain containing 10	AK171151|Samd10|229011|sterile alpha motif domain containing 10	BC019475|Samd10|229011|sterile alpha motif domain containing 10	AK164204|Samd10|229011|sterile alpha motif domain containing 10
mm9_v1_chr2_-_146337646_146337787	0.337548	CAGCAGG	AK038838|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	BC151040|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	BC151041|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	AK157932|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	NM_001033348|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm9_v1_chr3_-_9610062_9610137	0.330462	CAGCAGG	AF292939|Zfp704|170753|zinc finger protein 704	NM_133218|Zfp704|170753|zinc finger protein 704
mm9_v1_chr9_+_107242932_107243058	0.329762	CAGCAGG	AK043338|6430571L13Rik|235599|RIKEN cDNA 6430571L13 gene	AK085251|6430571L13Rik|235599|RIKEN cDNA 6430571L13 gene	AK032501|6430571L13Rik|235599|RIKEN cDNA 6430571L13 gene	AK032358|6430571L13Rik|235599|RIKEN cDNA 6430571L13 gene	NM_175486|6430571L13Rik|235599|RIKEN cDNA 6430571L13 gene	BC115775|6430571L13Rik|235599|RIKEN cDNA 6430571L13 gene	BC116708|6430571L13Rik|235599|RIKEN cDNA 6430571L13 gene
mm9_v1_chr13_+_90229271_90229367	0.327984	CAGCAGG	NM_025335|Tmem167|66074|transmembrane protein 167	AK021263|Tmem167|66074|transmembrane protein 167	AK032474|Tmem167|66074|transmembrane protein 167	AK161037|Tmem167|66074|transmembrane protein 167	AK031706|Tmem167|66074|transmembrane protein 167	AK007966|Tmem167|66074|transmembrane protein 167	AK019962|Tmem167|66074|transmembrane protein 167	AK016036|Tmem167|66074|transmembrane protein 167	AK012161|Tmem167|66074|transmembrane protein 167	AK002884|Tmem167|66074|transmembrane protein 167	AK088895|Tmem167|66074|transmembrane protein 167	AK160704|Tmem167|66074|transmembrane protein 167	AK007771|Tmem167|66074|transmembrane protein 167	AK132361|Tmem167|66074|transmembrane protein 167	BC085489|Tmem167|66074|transmembrane protein 167
mm9_v1_chr13_+_54890763_54890824	0.327857	CAGCAGG	AK166272|Tspan17|74257|tetraspanin 17	NM_028841|Tspan17|74257|tetraspanin 17	AK171691|Tspan17|74257|tetraspanin 17	BC010346|Tspan17|74257|tetraspanin 17	AK008761|Tspan17|74257|tetraspanin 17
mm9_v1_chr18_+_75979831_75979868	0.327788	CAGCAGG	BC070424|Zbtb7c|207259|zinc finger and BTB domain containing 7C	NM_145356|Zbtb7c|207259|zinc finger and BTB domain containing 7C	AK045522|Zbtb7c|207259|zinc finger and BTB domain containing 7C
mm9_v1_chr17_+_56857171_56857246	0.326387	CAGCAGG	NM_027244|Ndufa11|69875|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	AK008201|Ndufa11|69875|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	BC053075|Ndufa11|69875|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	BC059729|Ndufa11|69875|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	BC027690|Ndufa11|69875|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11
mm9_v1_chr9_+_108594470_108594519	0.326068	CAGCAGG	AF533977|Prkar2a|19087|protein kinase, cAMP dependent regulatory, type II alpha	NM_008924|Prkar2a|19087|protein kinase, cAMP dependent regulatory, type II alpha	BC080276|Prkar2a|19087|protein kinase, cAMP dependent regulatory, type II alpha	BC075623|Prkar2a|19087|protein kinase, cAMP dependent regulatory, type II alpha
mm9_v1_chr10_-_116675736_116675742	0.323682	CAGCAGG	NM_029906|9530003J23Rik|77397|RIKEN cDNA 9530003J23 gene
mm9_v1_chrX_-_49154409_49154409	0.323547	CAGCAGG	AK133417|Usp26|83563|ubiquitin specific peptidase 26	NM_031388|Usp26|83563|ubiquitin specific peptidase 26
mm9_v1_chr11_+_4035162_4035238	0.32093	CAGCAGG	NM_027859|Rnf215|71673|ring finger protein 215	AK154140|Rnf215|71673|ring finger protein 215	AK002414|Rnf215|71673|ring finger protein 215	AK047194|Rnf215|71673|ring finger protein 215	BC115907|Rnf215|71673|ring finger protein 215	BC115908|Rnf215|71673|ring finger protein 215	BC103627|Rnf215|71673|ring finger protein 215
mm9_v1_chr4_+_122782391_122782537	0.320497	CAGCAGG	U39545|Bmp8b|12164|bone morphogenetic protein 8b	AK082895|Bmp8b|12164|bone morphogenetic protein 8b	NM_007559|Bmp8b|12164|bone morphogenetic protein 8b	BC137890|Bmp8b|12164|bone morphogenetic protein 8b
mm9_v1_chr5_+_3543815_3543891	0.31996	CAGCAGG	AK008115|Fam133b|68152|family with sequence similarity 133, member B	AK019188|Fam133b|68152|family with sequence similarity 133, member B	NM_001042501|Fam133b|68152|family with sequence similarity 133, member B	AK020011|Fam133b|68152|family with sequence similarity 133, member B	BC147310|Fam133b|68152|family with sequence similarity 133, member B	BC147311|Fam133b|68152|family with sequence similarity 133, member B	BC172033|Fam133b|68152|family with sequence similarity 133, member B	BC027051|Fam133b|68152|family with sequence similarity 133, member B	AK161505|Fam133b|68152|family with sequence similarity 133, member B
mm9_v1_chr19_+_29485408_29485503	0.319529	CAGCAGG	AK089369|Pdcd1lg2|58205|programmed cell death 1 ligand 2	NM_021396|Pdcd1lg2|58205|programmed cell death 1 ligand 2	AF142780|Pdcd1lg2|58205|programmed cell death 1 ligand 2	AK155002|Pdcd1lg2|58205|programmed cell death 1 ligand 2	BC104138|Pdcd1lg2|58205|programmed cell death 1 ligand 2	BC104139|Pdcd1lg2|58205|programmed cell death 1 ligand 2
mm9_v1_chr3_-_101728226_101728375	0.31773	CAGCAGG	AK090352|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15	AK011679|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15	BC094925|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15	AK082482|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15	NM_001039371|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15
mm9_v1_chr8_-_73380865_73380911	0.313829	CAGCAGG	AF357239|Kcnn1|84036|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	AK043611|Kcnn1|84036|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	AK041033|Kcnn1|84036|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	NM_032397|Kcnn1|84036|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	AF303463|Kcnn1|84036|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
mm9_v1_chr2_+_69561103_69561149	0.309902	CAGCAGG	AK135178|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC150694|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	AK134121|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	NM_001081086|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC027420|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chr3_-_116126932_116126949	0.309889	CAGCAGG	AK043956|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK052560|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK142294|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001080818|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001173553|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)
mm9_v1_chr11_+_77851417_77851587	0.308424	CAGCAGG	AK170557|Flot2|14252|flotillin 2	NM_001040403|Flot2|14252|flotillin 2	NM_008028|Flot2|14252|flotillin 2	AK030199|Flot2|14252|flotillin 2	BC070423|Flot2|14252|flotillin 2	AK004589|Flot2|14252|flotillin 2	AK149530|Flot2|14252|flotillin 2	AK187814|Flot2|14252|flotillin 2	AK213895|Flot2|14252|flotillin 2
mm9_v1_chr10_+_7512691_7512745	0.307889	CAGCAGG	AK017370|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	NM_026141|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK014453|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK011443|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK013377|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK014406|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK049634|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK164127|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK167258|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK012371|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK167168|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	BC079912|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4
mm9_v1_chr8_-_28524173_28524415	0.306035	CAGCAGG	AY574265|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	AJ245706|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	AK149262|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	BC031985|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	NM_021369|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6
mm9_v1_chr17_-_27957398_27957565	0.302966	CAGCAGG	AK143016|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	AK165011|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	AK161603|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC132324|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC132326|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC137573|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC137576|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC145403|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	NM_001033279|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	NM_001044719|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed
mm9_v1_chr9_-_44817429_44817729	0.301253	CAGCAGG	EF474454|Cd3e|12501|CD3 antigen, epsilon polypeptide	GU456631|Cd3e|12501|CD3 antigen, epsilon polypeptide	BC098236|Cd3e|12501|CD3 antigen, epsilon polypeptide	BC028636|Cd3e|12501|CD3 antigen, epsilon polypeptide	BC145926|Cd3e|12501|CD3 antigen, epsilon polypeptide	BC145954|Cd3e|12501|CD3 antigen, epsilon polypeptide	J02990|Cd3e|12501|CD3 antigen, epsilon polypeptide	NM_007648|Cd3e|12501|CD3 antigen, epsilon polypeptide	AK041607|Cd3e|12501|CD3 antigen, epsilon polypeptide
mm9_v1_chr5_-_136450345_136450345	0.301101	CAGCAGG	NM_001160366|Srcrb4d|109267|scavenger receptor cysteine rich domain containing, group B (4 domains)
mm9_v1_chr2_-_127555628_127555667	0.300282	CAGCAGG	AK078971|Mall|228576|mal, T-cell differentiation protein-like	AK163867|Mall|228576|mal, T-cell differentiation protein-like	NM_145532|Mall|228576|mal, T-cell differentiation protein-like	BC012256|Mall|228576|mal, T-cell differentiation protein-like
mm9_v1_chr1_+_74901489_74901677	0.298888	CAGCAGG	NM_009872|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100712|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC103550|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100714|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100715|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)
mm9_v1_chr3_-_108248053_108248111	0.296253	CAGCAGG	AK077309|Sars|20226|seryl-aminoacyl-tRNA synthetase	BC008612|Sars|20226|seryl-aminoacyl-tRNA synthetase	BC031932|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK147825|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK082793|Sars|20226|seryl-aminoacyl-tRNA synthetase	NM_011319|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK028358|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK075827|Sars|20226|seryl-aminoacyl-tRNA synthetase
mm9_v1_chr4_-_118890772_118890821	0.295995	CAGCAGG	BC048569|4930538K18Rik|75180|RIKEN cDNA 4930538K18 gene	AK015991|4930538K18Rik|75180|RIKEN cDNA 4930538K18 gene	AK053970|4930538K18Rik|75180|RIKEN cDNA 4930538K18 gene	NM_029198|4930538K18Rik|75180|RIKEN cDNA 4930538K18 gene
mm9_v1_chr17_+_27110101_27110235	0.293526	CAGCAGG	BC049933|Zbtb9|474156|zinc finger and BTB domain containing 9	NM_001005916|Zbtb9|474156|zinc finger and BTB domain containing 9	AK154850|Zbtb9|474156|zinc finger and BTB domain containing 9	AK030262|Zbtb9|474156|zinc finger and BTB domain containing 9
mm9_v1_chr11_-_77303157_77303183	0.293482	CAGCAGG	BC151158|Ankrd13b|268445|ankyrin repeat domain 13b	BC172028|Ankrd13b|268445|ankyrin repeat domain 13b	NM_172945|Ankrd13b|268445|ankyrin repeat domain 13b
mm9_v1_chr14_+_57287083_57287181	0.29324	CAGCAGG	AB041598|Mphosph8|75339|M-phase phosphoprotein 8	NM_023773|Mphosph8|75339|M-phase phosphoprotein 8	AK018784|Mphosph8|75339|M-phase phosphoprotein 8	AK158773|Mphosph8|75339|M-phase phosphoprotein 8	AK159495|Mphosph8|75339|M-phase phosphoprotein 8	AK145432|Mphosph8|75339|M-phase phosphoprotein 8	AK145518|Mphosph8|75339|M-phase phosphoprotein 8	AK135958|Mphosph8|75339|M-phase phosphoprotein 8	BC079558|Mphosph8|75339|M-phase phosphoprotein 8	BC145164|Mphosph8|75339|M-phase phosphoprotein 8	BC145700|Mphosph8|75339|M-phase phosphoprotein 8
mm9_v1_chr1_-_179178874_179178897	0.292025	CAGCAGG	AF124142|Akt3|23797|thymoma viral proto-oncogene 3	BC066861|Akt3|23797|thymoma viral proto-oncogene 3	NM_011785|Akt3|23797|thymoma viral proto-oncogene 3
mm9_v1_chr19_+_46647844_46647860	0.29081	CAGCAGG	AK162407|Sfxn2|94279|sideroflexin 2	NM_053196|Sfxn2|94279|sideroflexin 2	AK034875|Sfxn2|94279|sideroflexin 2	BC019808|Sfxn2|94279|sideroflexin 2
mm9_v1_chr10_-_79100606_79100662	0.289362	CAGCAGG	AK032878|Shc2|216148|SHC (Src homology 2 domain containing) transforming protein 2	NM_001024539|Shc2|216148|SHC (Src homology 2 domain containing) transforming protein 2
mm9_v1_chr5_+_15440508_15440728	0.288527	CAGCAGG	AK164580|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110843|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110844|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110845|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110846|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_009784|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	AK084101|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73483|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73484|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73485|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73486|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73487|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	BC115871|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	AK052898|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm9_v1_chr2_+_29475234_29475393	0.287284	CAGCAGG	AK147468|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147470|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_001039086|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_001039087|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_054050|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147696|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147506|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AF348669|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr11_+_103994160_103994195	0.286563	CAGCAGG	AK158806|Crhr1|12921|corticotropin releasing hormone receptor 1	NM_007762|Crhr1|12921|corticotropin releasing hormone receptor 1
mm9_v1_chr5_-_97821348_97821397	0.285138	CAGCAGG	AK135863|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	BC139104|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	BC145776|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	NM_001033191|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	AK133248|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	EU192141|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit
mm9_v1_chr8_-_113551636_113551700	0.284683	CAGCAGG	AK147499|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	AK013362|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	NM_001190800|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	NM_172284|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
mm9_v1_chr5_+_124778097_124778160	0.283481	CAGCAGG	AK039255|2810006K23Rik|72650|RIKEN cDNA 2810006K23 gene	NM_001134717|2810006K23Rik|72650|RIKEN cDNA 2810006K23 gene	NM_028310|2810006K23Rik|72650|RIKEN cDNA 2810006K23 gene	BC046909|2810006K23Rik|72650|RIKEN cDNA 2810006K23 gene	BC054073|2810006K23Rik|72650|RIKEN cDNA 2810006K23 gene	AK140664|2810006K23Rik|72650|RIKEN cDNA 2810006K23 gene
mm9_v1_chr17_+_36054140_36054142	0.281946	CAGCAGG	BC052059|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	NM_001163818|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	AJ504718|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10
mm9_v1_chr8_-_113555584_113555650	0.280548	CAGCAGG	AK033235|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	NM_001190786|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
mm9_v1_chr1_+_63492447_63492511	0.273408	CAGCAGG	AK046677|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_001177600|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_011780|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK034022|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK083458|Adam23|23792|a disintegrin and metallopeptidase domain 23
mm9_v1_chr4_-_133742915_133743027	0.272445	CAGCAGG	AK085545|Ccdc21|70012|coiled-coil domain containing 21	BC008221|Ccdc21|70012|coiled-coil domain containing 21	AK030742|Ccdc21|70012|coiled-coil domain containing 21	AK141103|Ccdc21|70012|coiled-coil domain containing 21	AK010621|Ccdc21|70012|coiled-coil domain containing 21	NM_144527|Ccdc21|70012|coiled-coil domain containing 21
mm9_v1_chr19_+_44637331_44637363	0.271739	CAGCAGG	AK154774|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	BC130013|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	NM_176958|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK084960|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK043636|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK141867|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor
mm9_v1_chr6_+_90283246_90283309	0.271462	CAGCAGG	AK149464|Uroc1|243537|urocanase domain containing 1	NM_144940|Uroc1|243537|urocanase domain containing 1	BC022133|Uroc1|243537|urocanase domain containing 1
mm9_v1_chr11_-_94693315_94693315	0.271002	CAGCAGG	NM_001163172|Tmem92-ps|544806|transmembrane protein 92, pseudogene
mm9_v1_chr16_-_45654180_45654230	0.26741	CAGCAGG	AK078878|BC016579|212998|cDNA sequence, BC016579	BC016579|BC016579|212998|cDNA sequence, BC016579	NM_145389|BC016579|212998|cDNA sequence, BC016579
mm9_v1_chr10_-_77365164_77365282	0.264234	CAGCAGG	AY061858|Lrrc3|237387|leucine rich repeat containing 3	AK043535|Lrrc3|237387|leucine rich repeat containing 3	NM_145152|Lrrc3|237387|leucine rich repeat containing 3
mm9_v1_chr6_-_86619001_86619180	0.26236	CAGCAGG	CT010233|Mxd1|17119|MAX dimerization protein 1	L38926|Mxd1|17119|MAX dimerization protein 1	X83106|Mxd1|17119|MAX dimerization protein 1	BC034860|Mxd1|17119|MAX dimerization protein 1	U20614|Mxd1|17119|MAX dimerization protein 1	AK036504|Mxd1|17119|MAX dimerization protein 1	AK151882|Mxd1|17119|MAX dimerization protein 1	AK153303|Mxd1|17119|MAX dimerization protein 1	AK151114|Mxd1|17119|MAX dimerization protein 1	AK151014|Mxd1|17119|MAX dimerization protein 1	AK151305|Mxd1|17119|MAX dimerization protein 1	NM_010751|Mxd1|17119|MAX dimerization protein 1
mm9_v1_chr5_+_28643698_28643741	0.260569	CAGCAGG	NM_028234|Rbm33|381626|RNA binding motif protein 33	AK014289|Rbm33|381626|RNA binding motif protein 33
mm9_v1_chr18_-_68459958_68459986	0.260262	CAGCAGG	AK077093|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene	NM_153794|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene
mm9_v1_chr11_+_115761444_115761621	0.259533	CAGCAGG	NM_183259|2210020M01Rik|66528|RIKEN cDNA 2210020M01 gene	AK020450|2210020M01Rik|66528|RIKEN cDNA 2210020M01 gene	AK004370|2210020M01Rik|66528|RIKEN cDNA 2210020M01 gene	BC065414|2210020M01Rik|66528|RIKEN cDNA 2210020M01 gene
mm9_v1_chr5_+_115879617_115879707	0.25345	CAGCAGG	D49654|Msi1|17690|Musashi homolog 1(Drosophila)	NM_008629|Msi1|17690|Musashi homolog 1(Drosophila)	AK084019|Msi1|17690|Musashi homolog 1(Drosophila)
mm9_v1_chr7_-_48755259_48755259	0.251986	CAGCAGG	AK164198|AW146154|101835|expressed sequence AW146154	NM_001033530|AW146154|101835|expressed sequence AW146154
mm9_v1_chr5_+_138070341_138070466	0.248278	CAGCAGG	NM_001168652|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4	NM_146164|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4	AK088331|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4	AK158025|Lrch4-sap25|100316903|Lrch4-Sap25 gene	BC012525|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4
mm9_v1_chr11_-_58977197_58977301	0.248274	CAGCAGG	AK172525|A230051G13Rik|216792|RIKEN cDNA A230051G13 gene	AK038625|A230051G13Rik|216792|RIKEN cDNA A230051G13 gene	AK133203|A230051G13Rik|216792|RIKEN cDNA A230051G13 gene	NM_173785|A230051G13Rik|216792|RIKEN cDNA A230051G13 gene	BC094909|A230051G13Rik|216792|RIKEN cDNA A230051G13 gene
mm9_v1_chr9_-_20896404_20896431	0.245369	CAGCAGG	BC108392|Raver1|71766|ribonucleoprotein, PTB-binding 1	BC058271|Raver1|71766|ribonucleoprotein, PTB-binding 1	NM_027911|Raver1|71766|ribonucleoprotein, PTB-binding 1
mm9_v1_chr13_+_93381086_93381215	0.244051	CAGCAGG	AK165334|Serinc5|218442|serine incorporator 5	BC049189|Serinc5|218442|serine incorporator 5	BC062131|Serinc5|218442|serine incorporator 5	NM_172588|Serinc5|218442|serine incorporator 5	AK037699|Serinc5|218442|serine incorporator 5	AK163675|Serinc5|218442|serine incorporator 5	AB029501|Serinc5|218442|serine incorporator 5
mm9_v1_chr18_+_37164856_37165092	0.242392	CAGCAGG	BC079625|Pcdha10|12943|protocadherin alpha 10	AY013757|Pcdha10|12943|protocadherin alpha 10	NM_009961|Pcdha10|12943|protocadherin alpha 10	AB008178|Pcdha10|12943|protocadherin alpha 10
mm9_v1_chr7_+_56501558_56501558	0.240034	CAGCAGG	AK039374|Nav2|78286|neuron navigator 2	NM_175272|Nav2|78286|neuron navigator 2
mm9_v1_chr7_+_16760712_16760833	0.236707	CAGCAGG	NM_008627|Meis3|17537|Meis homeobox 3	AK083907|Meis3|17537|Meis homeobox 3	AK155364|Meis3|17537|Meis homeobox 3	AK142345|Meis3|17537|Meis homeobox 3	AK134758|Meis3|17537|Meis homeobox 3	BC003762|Meis3|17537|Meis homeobox 3	U57344|Meis3|17537|Meis homeobox 3	BC117532|Meis3|17537|Meis homeobox 3	BC118513|Meis3|17537|Meis homeobox 3
mm9_v1_chr7_+_80520360_80520429	0.236688	CAGCAGG	AK082560|Rgma|244058|RGM domain family, member A	BC059072|Rgma|244058|RGM domain family, member A	NM_177740|Rgma|244058|RGM domain family, member A
mm9_v1_chr17_+_36053855_36053941	0.236391	CAGCAGG	NM_175934|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	AK004266|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	AK011552|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	AK079389|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	AK031654|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	AK053183|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	AK079918|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	BC030903|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10
mm9_v1_chr1_+_92499999_92500134	0.234649	CAGCAGG	NM_133805|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	BC021488|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK142989|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK079522|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	BC024421|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK079111|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK162502|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK090013|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK145899|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK088323|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)
mm9_v1_chr13_-_64349830_64349845	0.233561	CAGCAGG	AK041155|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_001122989|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chr19_-_3575695_3575758	0.232082	CAGCAGG	AK129392|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK088526|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	BC008529|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK035236|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK015925|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK018652|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_001164159|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_028999|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_029456|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3
mm9_v1_chr3_-_8964045_8964059	0.231851	CAGCAGG	AY048852|Tpd52|21985|tumor protein D52	NM_001025261|Tpd52|21985|tumor protein D52	NM_001025262|Tpd52|21985|tumor protein D52
mm9_v1_chr1_-_172236462_172236462	0.229724	CAGCAGG	NM_001198955|Gm7694|665574|predicted gene 7694
mm9_v1_chr15_-_103070227_103070257	0.226391	CAGCAGG	BC004707|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001076789|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr16_-_17911283_17911450	0.225033	CAGCAGG	AK088520|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK142684|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK148404|Dgcr14|27886|DiGeorge syndrome critical region gene 14	BC013711|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AF037256|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_001081633|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_022408|Dgcr14|27886|DiGeorge syndrome critical region gene 14
mm9_v1_chr7_-_150734970_150735032	0.224328	CAGCAGG	AJ002198|Nap1l4|17955|nucleosome assembly protein 1-like 4	NM_008672|Nap1l4|17955|nucleosome assembly protein 1-like 4	AK156835|Nap1l4|17955|nucleosome assembly protein 1-like 4	BC089018|Nap1l4|17955|nucleosome assembly protein 1-like 4
mm9_v1_chr4_-_136604609_136604715	0.22281	CAGCAGG	BC059177|Zbtb40|230848|zinc finger and BTB domain containing 40	NM_198248|Zbtb40|230848|zinc finger and BTB domain containing 40	AK036584|Zbtb40|230848|zinc finger and BTB domain containing 40
mm9_v1_chr17_-_23877115_23877392	0.222319	CAGCAGG	AK044092|Paqr4|76498|progestin and adipoQ receptor family member IV	AB041564|Paqr4|76498|progestin and adipoQ receptor family member IV	AY424293|Paqr4|76498|progestin and adipoQ receptor family member IV	BC026921|Paqr4|76498|progestin and adipoQ receptor family member IV	AK152676|Paqr4|76498|progestin and adipoQ receptor family member IV	BC011185|Paqr4|76498|progestin and adipoQ receptor family member IV	NM_023824|Paqr4|76498|progestin and adipoQ receptor family member IV	AK033625|Paqr4|76498|progestin and adipoQ receptor family member IV	AK005142|Paqr4|76498|progestin and adipoQ receptor family member IV	AK044486|Paqr4|76498|progestin and adipoQ receptor family member IV
mm9_v1_chr6_-_145024596_145024703	0.221958	CAGCAGG	BC053706|Bcat1|12035|branched chain aminotransferase 1, cytosolic	X17502|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK167232|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK166971|Bcat1|12035|branched chain aminotransferase 1, cytosolic	NM_007532|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK168249|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr7_-_25372613_25372684	0.219053	CAGCAGG	AK138180|Zfp575|101544|zinc finger protein 575	BC150867|Zfp575|101544|zinc finger protein 575	BC150873|Zfp575|101544|zinc finger protein 575	AK159025|Zfp575|101544|zinc finger protein 575	NM_001033205|Zfp575|101544|zinc finger protein 575
mm9_v1_chr4_+_108000728_108000805	0.218663	CAGCAGG	AK081388|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	AK044999|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	NM_027250|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	AK008518|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	AK168902|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	AK168344|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	BC012391|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene
mm9_v1_chr5_+_58109246_58109263	0.218147	CAGCAGG	NM_001122758|Pcdh7|54216|protocadherin 7	NM_018764|Pcdh7|54216|protocadherin 7
mm9_v1_chr10_+_127774872_127774973	0.214794	CAGCAGG	BC013554|Cs|12974|citrate synthase	BC029754|Cs|12974|citrate synthase	NM_026444|Cs|12974|citrate synthase	AB056479|Cs|12974|citrate synthase
mm9_v1_chr2_+_154374639_154374777	0.214545	CAGCAGG	AK005633|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	DQ080431|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	NM_029305|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	BC147532|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	BC147533|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	BC039797|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene
mm9_v1_chr10_-_122633922_122634056	0.213776	CAGCAGG	L10903|Usp15|14479|ubiquitin specific peptidase 15	AF468037|Usp15|14479|ubiquitin specific peptidase 15	AK145749|Usp15|14479|ubiquitin specific peptidase 15	NM_027604|Usp15|14479|ubiquitin specific peptidase 15	AK046332|Usp15|14479|ubiquitin specific peptidase 15	AK083303|Usp15|14479|ubiquitin specific peptidase 15	AK133852|Usp15|14479|ubiquitin specific peptidase 15	AK122301|Usp15|14479|ubiquitin specific peptidase 15	BC050042|Usp15|14479|ubiquitin specific peptidase 15	AK164382|Usp15|14479|ubiquitin specific peptidase 15	AK163315|Usp15|14479|ubiquitin specific peptidase 15	AK168755|Usp15|14479|ubiquitin specific peptidase 15	AK161469|Usp15|14479|ubiquitin specific peptidase 15	AK161957|Usp15|14479|ubiquitin specific peptidase 15	AK163284|Usp15|14479|ubiquitin specific peptidase 15
mm9_v1_chr4_-_155243505_155243560	0.212842	CAGCAGG	AK089229|Gltpd1|79554|glycolipid transfer protein domain containing 1	AK040664|Gltpd1|79554|glycolipid transfer protein domain containing 1	NM_024472|Gltpd1|79554|glycolipid transfer protein domain containing 1
mm9_v1_chr11_+_75444489_75444601	0.212562	CAGCAGG	U96724|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AK054436|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AK078104|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	BC066112|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	NM_008916|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AK052817|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AK164290|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AK085743|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	BC014725|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AF483522|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AF483523|Inpp5k|19062|inositol polyphosphate 5-phosphatase K
mm9_v1_chr8_+_86590718_86590827	0.212041	CAGCAGG	AK147790|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	AK036208|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	AK044607|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	NM_009055|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	BC057018|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	AK083571|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	X76088|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)
mm9_v1_chr16_-_31201251_31201348	0.209626	CAGCAGG	AK032916|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK129041|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK044812|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK020591|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	NM_030138|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
mm9_v1_chr6_-_50332835_50332835	0.208138	CAGCAGG	AK004768|Osbpl3|71720|oxysterol binding protein-like 3	AK037114|Osbpl3|71720|oxysterol binding protein-like 3	NM_027881|Osbpl3|71720|oxysterol binding protein-like 3
mm9_v1_chr2_+_125498825_125498913	0.20812	CAGCAGG	AK002559|Eid1|58521|EP300 interacting inhibitor of differentiation 1	NM_025613|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK011293|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK012453|Eid1|58521|EP300 interacting inhibitor of differentiation 1	BC010712|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK077783|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK017543|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK169604|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK005258|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AL357453|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK078402|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK078409|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK148555|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK014440|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AF509968|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK078826|Eid1|58521|EP300 interacting inhibitor of differentiation 1	BC069897|Eid1|58521|EP300 interacting inhibitor of differentiation 1
mm9_v1_chr2_-_180008165_180008177	0.207186	CAGCAGG	AK050121|Cables2|252966|CDK5 and Abl enzyme substrate 2	NM_145851|Cables2|252966|CDK5 and Abl enzyme substrate 2
mm9_v1_chr6_-_97129076_97129149	0.206335	CAGCAGG	AK144898|Tmf1|232286|TATA element modulatory factor 1	AK144729|Tmf1|232286|TATA element modulatory factor 1	BC150931|Tmf1|232286|TATA element modulatory factor 1	NM_001081111|Tmf1|232286|TATA element modulatory factor 1
mm9_v1_chr2_+_127073631_127073743	0.205447	CAGCAGG	AK165880|Tmem127|69470|transmembrane protein 127	AK030324|Tmem127|69470|transmembrane protein 127	BC049832|Tmem127|69470|transmembrane protein 127	NM_175145|Tmem127|69470|transmembrane protein 127	AK050216|Tmem127|69470|transmembrane protein 127
mm9_v1_chr4_+_148178500_148178594	0.203963	CAGCAGG	BC075673|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_001159344|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_027195|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK048565|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK144492|Casz1|69743|castor homolog 1, zinc finger (Drosophila)
mm9_v1_chr8_-_61390372_61390423	0.201576	CAGCAGG	BC111102|Galntl6|270049|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6	AK080614|Galntl6|270049|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6	NM_175032|Galntl6|270049|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
mm9_v1_chr8_-_73132125_73132308	0.199052	CAGCAGG	BC002150|Ssbp4|76900|single stranded DNA binding protein 4	AK157387|Ssbp4|76900|single stranded DNA binding protein 4	AK154336|Ssbp4|76900|single stranded DNA binding protein 4	NM_133772|Ssbp4|76900|single stranded DNA binding protein 4
mm9_v1_chr12_-_84938095_84938119	0.198596	CAGCAGG	AK170954|Zfyve1|217695|zinc finger, FYVE domain containing 1	NM_183154|Zfyve1|217695|zinc finger, FYVE domain containing 1	AK139825|Zfyve1|217695|zinc finger, FYVE domain containing 1
mm9_v1_chr2_-_167457476_167457545	0.198462	CAGCAGG	AK012021|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	BC003449|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	AK158230|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	NM_023230|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1
mm9_v1_chr7_-_137663020_137663074	0.196934	CAGCAGG	BC050948|Ate1|11907|arginyltransferase 1	NM_001136054|Ate1|11907|arginyltransferase 1	AK167591|Ate1|11907|arginyltransferase 1	BC042601|Ate1|11907|arginyltransferase 1	NM_013799|Ate1|11907|arginyltransferase 1	AK148442|Ate1|11907|arginyltransferase 1
mm9_v1_chr16_-_28929698_28929810	0.195593	CAGCAGG	BC085092|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	BC068245|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	NM_177718|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene
mm9_v1_chrX_-_99266499_99266645	0.193333	CAGCAGG	BC132391|Rgag4|331474|retrotransposon gag domain containing 4	BC137795|Rgag4|331474|retrotransposon gag domain containing 4	AK032151|Rgag4|331474|retrotransposon gag domain containing 4	AK220436|Rgag4|331474|retrotransposon gag domain containing 4	NM_183318|Rgag4|331474|retrotransposon gag domain containing 4
mm9_v1_chr3_+_116265890_116265995	0.192712	CAGCAGG	AK035072|Lrrc39|109245|leucine rich repeat containing 39	NM_027321|Lrrc39|109245|leucine rich repeat containing 39	NM_175413|Lrrc39|109245|leucine rich repeat containing 39	AK039277|Lrrc39|109245|leucine rich repeat containing 39	AK079125|Lrrc39|109245|leucine rich repeat containing 39	AK008119|Lrrc39|109245|leucine rich repeat containing 39	AK052159|Lrrc39|109245|leucine rich repeat containing 39	BC119529|Lrrc39|109245|leucine rich repeat containing 39	BC119530|Lrrc39|109245|leucine rich repeat containing 39	AK046671|Lrrc39|109245|leucine rich repeat containing 39
mm9_v1_chr5_-_23122181_23122418	0.191498	CAGCAGG	AB006036|Srpk2|20817|serine/arginine-rich protein specific kinase 2	BC020178|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK136861|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK169580|Srpk2|20817|serine/arginine-rich protein specific kinase 2	NM_009274|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr11_+_114713196_114713368	0.187063	CAGCAGG	NM_147217|Gprc5c|70355|G protein-coupled receptor, family C, group 5, member C	BC031439|Gprc5c|70355|G protein-coupled receptor, family C, group 5, member C
mm9_v1_chr12_-_76697166_76697196	0.187015	CAGCAGG	BC094387|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	AK220163|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	BC085149|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	NM_012024|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform
mm9_v1_chr1_+_120524521_120524530	0.186707	CAGCAGG	AK007654|Tcfcp2l1|81879|transcription factor CP2-like 1	NM_023755|Tcfcp2l1|81879|transcription factor CP2-like 1	AK143960|Tcfcp2l1|81879|transcription factor CP2-like 1	AF311309|Tcfcp2l1|81879|transcription factor CP2-like 1	BC116663|Tcfcp2l1|81879|transcription factor CP2-like 1
mm9_v1_chrX_-_46641408_46641425	0.186434	CAGCAGG	AK028343|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	AK034058|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	AK041822|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	NM_145951|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2
mm9_v1_chr4_+_137773045_137773112	0.185638	CAGCAGG	NM_001122897|Hp1bp3|15441|heterochromatin protein 1, binding protein 3
mm9_v1_chr6_+_127403631_127403740	0.185413	CAGCAGG	AK133697|Parp11|101187|poly (ADP-ribose) polymerase family, member 11	BC040269|Parp11|101187|poly (ADP-ribose) polymerase family, member 11	NM_181402|Parp11|101187|poly (ADP-ribose) polymerase family, member 11
mm9_v1_chr9_-_107240625_107240680	0.184251	CAGCAGG	BC011431|Hemk1|69536|HemK methyltransferase family member 1	AK054445|Hemk1|69536|HemK methyltransferase family member 1	AK088071|Hemk1|69536|HemK methyltransferase family member 1	NM_133984|Hemk1|69536|HemK methyltransferase family member 1
mm9_v1_chr8_+_124114323_124114400	0.18278	CAGCAGG	AF255953|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK132329|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	BC068180|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK002795|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK003558|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK012604|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK003106|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK003205|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	NM_026160|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK151614|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	BC028812|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	BC110308|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	BC086774|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta
mm9_v1_chr3_-_116510948_116511083	0.181716	CAGCAGG	AK087855|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	AK041661|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	AK036225|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	NM_001081326|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase
mm9_v1_chr13_-_55464135_55464143	0.181599	CAGCAGG	BC055327|Lman2|66890|lectin, mannose-binding 2	NM_025828|Lman2|66890|lectin, mannose-binding 2
mm9_v1_chr11_-_100259048_100259060	0.181168	CAGCAGG	BC040757|Jup|16480|junction plakoglobin	NM_010593|Jup|16480|junction plakoglobin	BC094461|Jup|16480|junction plakoglobin
mm9_v1_chr10_-_80889856_80889928	0.180283	CAGCAGG	U57635|Nfic|18029|nuclear factor I/C	Y07692|Nfic|18029|nuclear factor I/C	AK087539|Nfic|18029|nuclear factor I/C	AK147496|Nfic|18029|nuclear factor I/C	AK155258|Nfic|18029|nuclear factor I/C	NM_008688|Nfic|18029|nuclear factor I/C	NM_026756|Nfic|18029|nuclear factor I/C
mm9_v1_chr19_+_39361574_39361600	0.179387	CAGCAGG	NM_007815|Cyp2c29|13095|cytochrome P450, family 2, subfamily c, polypeptide 29	BC019908|Cyp2c29|13095|cytochrome P450, family 2, subfamily c, polypeptide 29	D17674|Cyp2c29|13095|cytochrome P450, family 2, subfamily c, polypeptide 29
mm9_v1_chrX_-_137135022_137135060	0.176892	CAGCAGG	AF201289|Tsc22d3|14605|TSC22 domain family, member 3	EU818782|Tsc22d3|14605|TSC22 domain family, member 3	NM_001077364|Tsc22d3|14605|TSC22 domain family, member 3
mm9_v1_chr4_+_108292534_108292631	0.176594	CAGCAGG	AK146601|Cc2d1b|319965|coiled-coil and C2 domain containing 1B	AK043839|Cc2d1b|319965|coiled-coil and C2 domain containing 1B	NM_177045|Cc2d1b|319965|coiled-coil and C2 domain containing 1B	AK148162|Cc2d1b|319965|coiled-coil and C2 domain containing 1B
mm9_v1_chr11_-_113612473_113612473	0.17578	CAGCAGG	NM_020006|Cdc42ep4|56699|CDC42 effector protein (Rho GTPase binding) 4
mm9_v1_chr4_-_43713678_43713678	0.174952	CAGCAGG	BC046311|Olfr70|56014|olfactory receptor 70	NM_019485|Olfr70|56014|olfactory receptor 70
mm9_v1_chr11_+_75401554_75401692	0.171028	CAGCAGG	AK144618|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152089|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK153569|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK167760|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152874|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK165659|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168720|Pitpna|18738|phosphatidylinositol transfer protein, alpha	U96725|Pitpna|18738|phosphatidylinositol transfer protein, alpha	NM_008850|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK149745|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK151496|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168187|Pitpna|18738|phosphatidylinositol transfer protein, alpha	BC056171|Pitpna|18738|phosphatidylinositol transfer protein, alpha
mm9_v1_chr6_+_146526406_146526495	0.170459	CAGCAGG	AK169380|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK050102|Fgfr1op2|67529|FGFR1 oncogene partner 2	NM_026218|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK151318|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK152617|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK153137|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK004662|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK008983|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK005320|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK169383|Fgfr1op2|67529|FGFR1 oncogene partner 2	AB041650|Fgfr1op2|67529|FGFR1 oncogene partner 2	BC028876|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK159805|Fgfr1op2|67529|FGFR1 oncogene partner 2	BC025085|Fgfr1op2|67529|FGFR1 oncogene partner 2
mm9_v1_chr6_+_88852244_88852316	0.169336	CAGCAGG	NM_011906|Tpra1|24100|transmembrane protein, adipocyte asscociated 1	AK155116|Tpra1|24100|transmembrane protein, adipocyte asscociated 1	AK172045|Tpra1|24100|transmembrane protein, adipocyte asscociated 1
mm9_v1_chr19_-_12870612_12870615	0.166743	CAGCAGG	NM_053009|Zfp91|109910|zinc finger protein 91	AK147560|Zfp91|109910|zinc finger protein 91
mm9_v1_chr4_-_147662005_147662073	0.166739	CAGCAGG	BC070441|Ptchd2|242748|patched domain containing 2	BC072569|Ptchd2|242748|patched domain containing 2	AK090326|Ptchd2|242748|patched domain containing 2	NM_001083342|Ptchd2|242748|patched domain containing 2
mm9_v1_chr2_+_70312979_70313222	0.164189	CAGCAGG	AK036234|Sp5|64406|trans-acting transcription factor 5	NM_022435|Sp5|64406|trans-acting transcription factor 5	BC116691|Sp5|64406|trans-acting transcription factor 5	BC117505|Sp5|64406|trans-acting transcription factor 5	AF279479|Sp5|64406|trans-acting transcription factor 5
mm9_v1_chrX_+_70656434_70656441	0.161361	CAGCAGG	U47104|Zfp92|22754|zinc finger protein 92	AK141522|Zfp92|22754|zinc finger protein 92	NM_009566|Zfp92|22754|zinc finger protein 92
mm9_v1_chr15_+_32174546_32174624	0.160199	CAGCAGG	AK143026|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK045236|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	NM_009154|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK031231|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK054256|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK165206|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK039101|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK157706|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK141612|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
mm9_v1_chr10_+_60880719_60880719	0.158978	CAGCAGG	NM_013611|Nodal|18119|nodal	X70514|Nodal|18119|nodal
mm9_v1_chr8_-_13974679_13974776	0.157185	CAGCAGG	BC099613|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK166972|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK166875|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK077810|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC132465|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC132467|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC145286|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK163687|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	NM_173744|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene
mm9_v1_chr13_+_24706474_24706497	0.156153	CAGCAGG	AK041665|Fam65b|193385|family with sequence similarity 65, member B	NM_178658|Fam65b|193385|family with sequence similarity 65, member B	AK036452|Fam65b|193385|family with sequence similarity 65, member B	AK040887|Fam65b|193385|family with sequence similarity 65, member B
mm9_v1_chr2_+_173902521_173902654	0.155853	CAGCAGG	AK078110|Stx16|228960|syntaxin 16	NM_001102423|Stx16|228960|syntaxin 16	NM_001102424|Stx16|228960|syntaxin 16	NM_001102425|Stx16|228960|syntaxin 16	NM_172675|Stx16|228960|syntaxin 16	BC094436|Stx16|228960|syntaxin 16	BC095989|Stx16|228960|syntaxin 16	BC138544|Stx16|228960|syntaxin 16
mm9_v1_chr2_+_34729897_34729955	0.153092	CAGCAGG	AK033810|D730039F16Rik|77996|RIKEN cDNA D730039F16 gene	AK085616|D730039F16Rik|77996|RIKEN cDNA D730039F16 gene	NM_030021|D730039F16Rik|77996|RIKEN cDNA D730039F16 gene
mm9_v1_chr6_-_50406080_50406168	0.153078	CAGCAGG	BC086485|Osbpl3|71720|oxysterol binding protein-like 3	AK160310|Osbpl3|71720|oxysterol binding protein-like 3	NM_001163645|Osbpl3|71720|oxysterol binding protein-like 3
mm9_v1_chr2_+_25279213_25279249	0.152883	CAGCAGG	NM_001177366|Fut7|14347|fucosyltransferase 7	NM_001177367|Fut7|14347|fucosyltransferase 7	NM_013524|Fut7|14347|fucosyltransferase 7	BC104732|Fut7|14347|fucosyltransferase 7	BC105670|Fut7|14347|fucosyltransferase 7	BC105671|Fut7|14347|fucosyltransferase 7	BC105672|Fut7|14347|fucosyltransferase 7
mm9_v1_chr9_-_107444181_107444195	0.150779	CAGCAGG	AK162586|Cyb561d2|56368|cytochrome b-561 domain containing 2	AK030225|Cyb561d2|56368|cytochrome b-561 domain containing 2	NM_019720|Cyb561d2|56368|cytochrome b-561 domain containing 2
mm9_v1_chr18_+_80451983_80452066	0.149363	CAGCAGG	NM_001164420|Pqlc1|66943|PQ loop repeat containing 1	AK153023|Pqlc1|66943|PQ loop repeat containing 1	AK153176|Pqlc1|66943|PQ loop repeat containing 1
mm9_v1_chr8_+_87560809_87560830	0.149115	CAGCAGG	AK154985|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	AK155760|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	NM_145390|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)
mm9_v1_chr7_+_53496356_53496372	0.149063	CAGCAGG	NM_013624|Otog|18419|otogelin	U96411|Otog|18419|otogelin	AK165831|Otog|18419|otogelin
mm9_v1_chr1_+_168060558_168060597	0.146264	CAGCAGG	AK008784|Gpa33|59290|glycoprotein A33 (transmembrane)	AF247659|Gpa33|59290|glycoprotein A33 (transmembrane)	NM_021610|Gpa33|59290|glycoprotein A33 (transmembrane)	BC008528|Gpa33|59290|glycoprotein A33 (transmembrane)
mm9_v1_chr5_+_29895742_29895846	0.144492	CAGCAGG	AK046056|Ube3c|100763|ubiquitin protein ligase E3C	NM_133907|Ube3c|100763|ubiquitin protein ligase E3C	AK122187|Ube3c|100763|ubiquitin protein ligase E3C
mm9_v1_chr13_+_40955500_40955723	0.143813	CAGCAGG	AK077598|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	NM_023887|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK156328|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AY435148|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm9_v1_chr2_-_63936044_63936094	0.143444	CAGCAGG	AF263913|Fign|60344|fidgetin	AK163474|Fign|60344|fidgetin	AK164536|Fign|60344|fidgetin	NM_021716|Fign|60344|fidgetin	AK143787|Fign|60344|fidgetin	BC059266|Fign|60344|fidgetin
mm9_v1_chr9_-_96264688_96264739	0.135781	CAGCAGG	NM_007502|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	U59761|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	BC079916|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK168273|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK032516|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK151700|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK151841|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK159532|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide
mm9_v1_chr17_-_36106668_36106727	0.135641	CAGCAGG	BC046965|Abcf1|224742|ATP-binding cassette, sub-family F (GCN20), member 1	BC032250|Abcf1|224742|ATP-binding cassette, sub-family F (GCN20), member 1	BC063094|Abcf1|224742|ATP-binding cassette, sub-family F (GCN20), member 1	NM_013854|Abcf1|224742|ATP-binding cassette, sub-family F (GCN20), member 1	AK077741|Abcf1|224742|ATP-binding cassette, sub-family F (GCN20), member 1
mm9_v1_chr4_+_115845976_115845999	0.135623	CAGCAGG	AK006685|1700042G07Rik|67323|RIKEN cDNA 1700042G07 gene	NM_001099295|1700042G07Rik|67323|RIKEN cDNA 1700042G07 gene	AK018884|1700042G07Rik|67323|RIKEN cDNA 1700042G07 gene
mm9_v1_chr15_-_98728930_98728984	0.132207	CAGCAGG	BC062810|Dhh|13363|desert hedgehog	AK032466|Dhh|13363|desert hedgehog	AK033392|Dhh|13363|desert hedgehog	NM_007857|Dhh|13363|desert hedgehog
mm9_v1_chr3_-_92261456_92261538	0.131857	CAGCAGG	NM_011478|Sprr3|20766|small proline-rich protein 3	BC125629|Sprr3|20766|small proline-rich protein 3
mm9_v1_chr11_-_20012953_20012967	0.131388	CAGCAGG	NM_146243|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)
mm9_v1_chr1_-_133423902_133423973	0.131245	CAGCAGG	AK143649|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2	NM_001081011|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2
mm9_v1_chr1_+_157005804_157006022	0.128363	CAGCAGG	NM_021433|Stx6|58244|syntaxin 6	AK018167|Stx6|58244|syntaxin 6	AK031673|Stx6|58244|syntaxin 6	AK159392|Stx6|58244|syntaxin 6	AK019106|Stx6|58244|syntaxin 6	AK044905|Stx6|58244|syntaxin 6	AK049124|Stx6|58244|syntaxin 6	AK009690|Stx6|58244|syntaxin 6	AK151549|Stx6|58244|syntaxin 6	BC029205|Stx6|58244|syntaxin 6	AF237814|Stx6|58244|syntaxin 6
mm9_v1_chr12_-_80108263_80108327	0.121695	CAGCAGG	BC066067|Tmem229b|268567|transmembrane protein 229B	NM_178745|Tmem229b|268567|transmembrane protein 229B	AK033403|Tmem229b|268567|transmembrane protein 229B	AK053623|Tmem229b|268567|transmembrane protein 229B
mm9_v1_chr1_-_55283618_55283625	0.119663	CAGCAGG	AK012229|Rftn2|74013|raftlin family member 2	AK031158|Rftn2|74013|raftlin family member 2	BC038341|Rftn2|74013|raftlin family member 2	NM_028713|Rftn2|74013|raftlin family member 2
mm9_v1_chr11_+_101229029_101229043	0.119185	CAGCAGG	AK050279|G6pc|14377|glucose-6-phosphatase, catalytic	AK052656|G6pc|14377|glucose-6-phosphatase, catalytic	U00445|G6pc|14377|glucose-6-phosphatase, catalytic	BC013448|G6pc|14377|glucose-6-phosphatase, catalytic	NM_008061|G6pc|14377|glucose-6-phosphatase, catalytic
mm9_v1_chr4_-_151510433_151510433	0.118395	CAGCAGG	AF540942|Espn|56226|espin	AF540943|Espn|56226|espin	AF540944|Espn|56226|espin	AF540945|Espn|56226|espin	NM_207688|Espn|56226|espin	NM_207689|Espn|56226|espin	NM_207690|Espn|56226|espin	NM_207691|Espn|56226|espin
mm9_v1_chr15_-_101784712_101784719	0.118307	CAGCAGG	AK146611|Krt78|332131|keratin 78	NM_212487|Krt78|332131|keratin 78
mm9_v1_chr6_+_86145220_86145449	0.116819	CAGCAGG	AK010785|Tgfa|21802|transforming growth factor alpha	AK165017|Tgfa|21802|transforming growth factor alpha	NM_031199|Tgfa|21802|transforming growth factor alpha	AK166321|Tgfa|21802|transforming growth factor alpha	U65016|Tgfa|21802|transforming growth factor alpha	BC132185|Tgfa|21802|transforming growth factor alpha	BC132211|Tgfa|21802|transforming growth factor alpha
mm9_v1_chr2_-_26819816_26819905	0.11558	CAGCAGG	AK138894|Rexo4|227656|REX4, RNA exonuclease 4 homolog (S. cerevisiae)	AK133982|Rexo4|227656|REX4, RNA exonuclease 4 homolog (S. cerevisiae)	BC060147|Rexo4|227656|REX4, RNA exonuclease 4 homolog (S. cerevisiae)	AB221675|Rexo4|227656|REX4, RNA exonuclease 4 homolog (S. cerevisiae)	AK079733|Rexo4|227656|REX4, RNA exonuclease 4 homolog (S. cerevisiae)	NM_207234|Rexo4|227656|REX4, RNA exonuclease 4 homolog (S. cerevisiae)
mm9_v1_chr16_-_3718084_3718136	0.11482	CAGCAGG	BC108993|Mefv|54483|Mediterranean fever	BC108994|Mefv|54483|Mediterranean fever	AF143409|Mefv|54483|Mediterranean fever	NM_001161790|Mefv|54483|Mediterranean fever	NM_001161791|Mefv|54483|Mediterranean fever	NM_019453|Mefv|54483|Mediterranean fever
mm9_v1_chr9_-_106691395_106691543	0.110239	CAGCAGG	BC133714|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK155151|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK090250|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK083903|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	NM_030730|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)
mm9_v1_chr4_-_131628011_131628011	0.109119	CAGCAGG	L00919|Epb4.1|269587|erythrocyte protein band 4.1	NM_183428|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr13_-_91363591_91363597	0.108281	CAGCAGG	NM_025770|Atg10|66795|autophagy-related 10 (yeast)
mm9_v1_chr11_-_101846064_101846112	0.107705	CAGCAGG	AF280809|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	AK008734|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	AK170772|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	NM_028207|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	BC016269|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
mm9_v1_chrX_+_45461901_45462257	0.106837	CAGCAGG	AK172086|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	NM_133213|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AF428102|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK164538|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK078835|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK087627|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK085520|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AF367247|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	BC140977|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound
mm9_v1_chr14_-_102008407_102008407	0.106486	CAGCAGG	AK039337|Tbc1d4|210789|TBC1 domain family, member 4	NM_001081278|Tbc1d4|210789|TBC1 domain family, member 4
mm9_v1_chr7_-_55237665_55237665	0.101941	CAGCAGG	AY042194|Mrgpra4|235854|MAS-related GPR, member A4	NM_153524|Mrgpra4|235854|MAS-related GPR, member A4
mm9_v1_chr10_+_18564876_18564915	0.100678	CAGCAGG	AF249870|Perp|64058|PERP, TP53 apoptosis effector	NM_022032|Perp|64058|PERP, TP53 apoptosis effector
mm9_v1_chr10_+_59747208_59747231	0.0978959	CAGCAGG	AK149785|Psap|19156|prosaposin	NM_001146124|Psap|19156|prosaposin
mm9_v1_chr1_-_36426005_36426027	0.0974905	CAGCAGG	AK030079|4632411B12Rik|226976|RIKEN cDNA 4632411B12 gene	NM_172652|4632411B12Rik|226976|RIKEN cDNA 4632411B12 gene
mm9_v1_chr4_+_63221260_63221393	0.0947273	CAGCAGG	BC023748|6330416G13Rik|230279|RIKEN cDNA 6330416G13 gene	AK031016|6330416G13Rik|230279|RIKEN cDNA 6330416G13 gene	NM_144905|6330416G13Rik|230279|RIKEN cDNA 6330416G13 gene
mm9_v1_chr2_+_150043834_150043834	0.0943832	CAGCAGG	AB470966|Zfp937|245174|zinc finger protein 937	NM_001142411|Zfp937|245174|zinc finger protein 937
mm9_v1_chr6_+_137683599_137683666	0.0919411	CAGCAGG	AK147179|Strap|20901|serine/threonine kinase receptor associated protein	NM_011499|Strap|20901|serine/threonine kinase receptor associated protein	AK154158|Strap|20901|serine/threonine kinase receptor associated protein	AK075804|Strap|20901|serine/threonine kinase receptor associated protein	AF096285|Strap|20901|serine/threonine kinase receptor associated protein	AK077504|Strap|20901|serine/threonine kinase receptor associated protein	AK145971|Strap|20901|serine/threonine kinase receptor associated protein	BC141076|Strap|20901|serine/threonine kinase receptor associated protein	BC145342|Strap|20901|serine/threonine kinase receptor associated protein
mm9_v1_chr12_+_104626888_104626975	0.0916035	CAGCAGG	NM_026580|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK076336|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	NM_001177841|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	BC049551|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK016449|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK160505|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK019830|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006346|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006469|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006054|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	BC052409|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2
mm9_v1_chr1_+_93391235_93391270	0.0889034	CAGCAGG	NM_028718|Traf3ip1|74019|TRAF3 interacting protein 1	AY613437|Traf3ip1|74019|TRAF3 interacting protein 1	BC046538|Traf3ip1|74019|TRAF3 interacting protein 1	BC117868|Traf3ip1|74019|TRAF3 interacting protein 1
mm9_v1_chr16_+_18052952_18053027	0.0798502	CAGCAGG	AK019346|Dgcr6|13353|DiGeorge syndrome critical region gene 6	NM_010047|Dgcr6|13353|DiGeorge syndrome critical region gene 6	AK160342|Dgcr6|13353|DiGeorge syndrome critical region gene 6
mm9_v1_chr17_-_10512217_10512250	0.0786404	CAGCAGG	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr13_-_96902531_96902531	0.077327	CAGCAGG	AK173092|Sv2c|75209|synaptic vesicle glycoprotein 2c	NM_029210|Sv2c|75209|synaptic vesicle glycoprotein 2c
mm9_v1_chr1_-_191994557_191994590	0.0763746	CAGCAGG	BC051411|Prox1|19130|prospero-related homeobox 1	NM_008937|Prox1|19130|prospero-related homeobox 1	AK052889|Prox1|19130|prospero-related homeobox 1
mm9_v1_chr9_+_122026378_122026421	0.0750461	CAGCAGG	NM_001164572|Snrk|20623|SNF related kinase	NM_133741|Snrk|20623|SNF related kinase
mm9_v1_chr17_-_25377052_25377092	0.0732573	CAGCAGG	BC055872|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	NM_172529|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	BC023869|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	AK044021|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	AK078230|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	AY465529|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit
mm9_v1_chr13_-_54789548_54789560	0.0713831	CAGCAGG	AK171943|Rnf44|105239|ring finger protein 44	AK172257|Rnf44|105239|ring finger protein 44	NM_001146027|Rnf44|105239|ring finger protein 44
mm9_v1_chr10_-_80024245_80024324	0.0698028	CAGCAGG	BC039623|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	BC011438|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	BC069964|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	BC054843|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	BC025511|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	AK173108|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	AK012127|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	AK087016|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	BC052424|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	AK144769|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	NM_025852|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)
mm9_v1_chr13_-_74429744_74429778	0.067903	CAGCAGG	AK154152|Ahrr|11624|aryl-hydrocarbon receptor repressor	BC118534|Ahrr|11624|aryl-hydrocarbon receptor repressor	AB015140|Ahrr|11624|aryl-hydrocarbon receptor repressor	NM_009644|Ahrr|11624|aryl-hydrocarbon receptor repressor	AK155711|Ahrr|11624|aryl-hydrocarbon receptor repressor	AK154761|Ahrr|11624|aryl-hydrocarbon receptor repressor
mm9_v1_chr3_+_89577436_89577810	0.065549	CAGCAGG	NM_027315|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AY112699|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AY945937|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AK146707|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr6_-_83391623_83391671	0.0650771	CAGCAGG	AK044758|Tet3|194388|tet oncogene family member 3	AK046543|Tet3|194388|tet oncogene family member 3	AK046552|Tet3|194388|tet oncogene family member 3	AK046553|Tet3|194388|tet oncogene family member 3	NM_183138|Tet3|194388|tet oncogene family member 3
mm9_v1_chr19_+_8692485_8692668	0.0649545	CAGCAGG	NM_008766|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	BC021647|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	U52842|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	AK035971|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6
mm9_v1_chr3_+_126299858_126299959	0.0643265	CAGCAGG	AK220516|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	NM_001025438|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	NM_001025439|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	NM_023813|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK032524|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK042722|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK044872|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK142435|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK157736|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK145106|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	BC057103|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta
mm9_v1_chr9_-_106463955_106463961	0.0632414	CAGCAGG	AK016688|Iqcf3|68265|IQ motif containing F3	AK018835|Iqcf3|68265|IQ motif containing F3	BC049549|Iqcf3|68265|IQ motif containing F3	NM_026645|Iqcf3|68265|IQ motif containing F3	AK132739|Iqcf3|68265|IQ motif containing F3	DQ153247|Iqcf3|68265|IQ motif containing F3
mm9_v1_chr6_-_116623789_116623853	0.0602851	CAGCAGG	AK139284|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK170955|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	BC023245|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK089460|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	BC060709|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK036528|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK053578|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK151561|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK152639|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK164357|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK160584|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK171198|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	NM_178045|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4
mm9_v1_chr2_-_120557235_120557264	0.0599218	CAGCAGG	BC117555|Cdan1|68968|congenital dyserythropoietic anemia, type I (human)	AK157271|Cdan1|68968|congenital dyserythropoietic anemia, type I (human)	NM_026891|Cdan1|68968|congenital dyserythropoietic anemia, type I (human)
mm9_v1_chr11_-_120924851_120924882	0.0596002	CAGCAGG	AK007321|Sectm1b|58210|secreted and transmembrane 1B	BC010805|Sectm1b|58210|secreted and transmembrane 1B	AK143807|Sectm1b|58210|secreted and transmembrane 1B	AK029082|Sectm1b|58210|secreted and transmembrane 1B	NM_026907|Sectm1b|58210|secreted and transmembrane 1B
mm9_v1_chr17_-_34740422_34740567	0.058261	CAGCAGG	BC012031|Rnf5|54197|ring finger protein 5	AK012729|Rnf5|54197|ring finger protein 5	AK020514|Rnf5|54197|ring finger protein 5	BC016449|Rnf5|54197|ring finger protein 5	NM_019403|Rnf5|54197|ring finger protein 5	AK019289|Rnf5|54197|ring finger protein 5	AK020515|Rnf5|54197|ring finger protein 5	AK010792|Rnf5|54197|ring finger protein 5
mm9_v1_chr13_+_97312572_97312733	0.0556303	CAGCAGG	AK030305|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	NM_001164222|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	NM_023420|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK047100|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK080958|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK038061|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK163624|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK012989|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK038803|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	BC016197|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
mm9_v1_chr4_-_128483355_128483429	0.0549505	CAGCAGG	NM_001081098|Zfp362|230761|zinc finger protein 362
mm9_v1_chr11_-_102157904_102158007	0.0541605	CAGCAGG	NM_001098836|Atxn7l3|217218|ataxin 7-like 3	NM_001098837|Atxn7l3|217218|ataxin 7-like 3	AK090368|Atxn7l3|217218|ataxin 7-like 3
mm9_v1_chr14_+_35188650_35188769	0.0532638	CAGCAGG	AK134285|Mmrn2|105450|multimerin 2	AK077884|Mmrn2|105450|multimerin 2	NM_153127|Mmrn2|105450|multimerin 2	AK078470|Mmrn2|105450|multimerin 2	BC034871|Mmrn2|105450|multimerin 2	BC145845|Mmrn2|105450|multimerin 2
mm9_v1_chr17_-_51318643_51318676	0.0531887	CAGCAGG	AK005461|Tbc1d5|72238|TBC1 domain family, member 5	NM_028162|Tbc1d5|72238|TBC1 domain family, member 5	AK144467|Tbc1d5|72238|TBC1 domain family, member 5
mm9_v1_chr16_-_21787906_21787931	0.0523519	CAGCAGG	NM_023737|Ehhadh|74147|enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
mm9_v1_chr12_-_114238815_114238927	0.0509033	CAGCAGG	NM_028193|Brf1|72308|BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)
mm9_v1_chr11_-_74537877_74537918	0.0506738	CAGCAGG	NM_013625|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm9_v1_chr4_+_140924106_140924134	0.0505537	CAGCAGG	BC147048|Fam131c|277743|family with sequence similarity 131, member C	BC147049|Fam131c|277743|family with sequence similarity 131, member C	NM_001085513|Fam131c|277743|family with sequence similarity 131, member C
mm9_v1_chr5_-_115108377_115108429	0.048812	CAGCAGG	BC127052|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4	AF208026|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4	AK083223|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4	AF279672|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4	AK002735|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4	NM_022017|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4
mm9_v1_chr7_-_48648629_48648748	0.0483273	CAGCAGG	BC052842|AI987944|233168|expressed sequence AI987944	BC138015|AI987944|233168|expressed sequence AI987944	NM_183167|AI987944|233168|expressed sequence AI987944	BC036560|AI987944|233168|expressed sequence AI987944	BC099396|AI987944|233168|expressed sequence AI987944
mm9_v1_chr7_+_130267398_130267398	0.0481443	CAGCAGG	NM_144925|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr12_-_93087514_93087619	0.0478418	CAGCAGG	AF063095|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK160936|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	BC026816|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK005023|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK146022|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK161546|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK160420|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK005544|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK220502|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	NM_001039089|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	NM_011344|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)
mm9_v1_chr6_+_72297294_72297363	0.0466713	CAGCAGG	AK085662|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	NM_026696|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC064080|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	AK013079|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC066053|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC117811|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC117812|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	AK002701|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene
mm9_v1_chrX_+_98449866_98450159	0.0465761	CAGCAGG	AF114260|Foxo4|54601|forkhead box O4	NM_018789|Foxo4|54601|forkhead box O4	AK157830|Foxo4|54601|forkhead box O4	BC099460|Foxo4|54601|forkhead box O4	BC139275|Foxo4|54601|forkhead box O4	BC139304|Foxo4|54601|forkhead box O4	AB032770|Foxo4|54601|forkhead box O4	AB221664|Foxo4|54601|forkhead box O4
mm9_v1_chr4_+_119212261_119212343	0.0458695	CAGCAGG	AK082840|Foxj3|230700|forkhead box J3	AK171564|Foxj3|230700|forkhead box J3	AK129271|Foxj3|230700|forkhead box J3	BC058231|Foxj3|230700|forkhead box J3	NM_172699|Foxj3|230700|forkhead box J3	AK133640|Foxj3|230700|forkhead box J3	AK163298|Foxj3|230700|forkhead box J3	AK086875|Foxj3|230700|forkhead box J3	AK139508|Foxj3|230700|forkhead box J3
mm9_v1_chr15_-_97976073_97976140	0.0454091	CAGCAGG	AK030168|Asb8|78541|ankyrin repeat and SOCS box-containing 8	AK087299|Asb8|78541|ankyrin repeat and SOCS box-containing 8	NM_001170710|Asb8|78541|ankyrin repeat and SOCS box-containing 8	NM_030121|Asb8|78541|ankyrin repeat and SOCS box-containing 8
mm9_v1_chr17_+_56396215_56396281	0.0432831	CAGCAGG	NM_010192|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK129000|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK147879|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK155363|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK034412|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK080978|Fem1a|14154|feminization 1 homolog a (C. elegans)	BC054382|Fem1a|14154|feminization 1 homolog a (C. elegans)	BC009161|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK005041|Fem1a|14154|feminization 1 homolog a (C. elegans)	BC110669|Fem1a|14154|feminization 1 homolog a (C. elegans)
mm9_v1_chr19_-_5457470_5457607	0.0417781	CAGCAGG	BC016659|Ccdc85b|240514|coiled-coil domain containing 85B	BC094592|Ccdc85b|240514|coiled-coil domain containing 85B	BC058411|Ccdc85b|240514|coiled-coil domain containing 85B	NM_198616|Ccdc85b|240514|coiled-coil domain containing 85B
mm9_v1_chr15_-_74942109_74942378	0.0393274	CAGCAGG	M18466|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2	D86232|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2	BC092082|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2	NM_001099217|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2
mm9_v1_chr11_-_54601163_54601250	0.0378878	CAGCAGG	AK145931|Cdc42se2|72729|CDC42 small effector 2	AK160934|Cdc42se2|72729|CDC42 small effector 2	NM_178626|Cdc42se2|72729|CDC42 small effector 2
mm9_v1_chr4_-_151526315_151526315	0.0376016	CAGCAGG	AF239886|Espn|56226|espin	NM_207687|Espn|56226|espin
mm9_v1_chr11_+_87476588_87476588	0.0354369	CAGCAGG	AK032782|Rnf43|207742|ring finger protein 43	NM_172448|Rnf43|207742|ring finger protein 43
mm9_v1_chr9_+_108893946_108894060	0.0349295	CAGCAGG	BC057594|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	EU571215|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	NM_173019|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	EU571216|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	EU571217|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	AK155172|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	AY646092|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	AY707862|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	AY756065|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	AY756066|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	AY756067|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	DQ350638|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4
mm9_v1_chr6_+_108610606_108610702	0.031866	CAGCAGG	AK048242|Bhlhe40|20893|basic helix-loop-helix family, member e40	NM_011498|Bhlhe40|20893|basic helix-loop-helix family, member e40	AK154935|Bhlhe40|20893|basic helix-loop-helix family, member e40	AK090032|Bhlhe40|20893|basic helix-loop-helix family, member e40	BC010720|Bhlhe40|20893|basic helix-loop-helix family, member e40	AF010305|Bhlhe40|20893|basic helix-loop-helix family, member e40	AF364051|Bhlhe40|20893|basic helix-loop-helix family, member e40
mm9_v1_chr7_+_19589395_19589469	0.0306923	CAGCAGG	AK087457|Irf2bp1|272359|interferon regulatory factor 2 binding protein 1	AK031834|Irf2bp1|272359|interferon regulatory factor 2 binding protein 1	BC036162|Irf2bp1|272359|interferon regulatory factor 2 binding protein 1	NM_178757|Irf2bp1|272359|interferon regulatory factor 2 binding protein 1	AK032010|Irf2bp1|272359|interferon regulatory factor 2 binding protein 1
mm9_v1_chr16_-_21694608_21694737	0.0261503	CAGCAGG	AK051892|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	AK044207|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	AK053253|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	BC072629|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	BC052490|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	NM_001001881|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene
mm9_v1_chr1_-_193220824_193220968	0.0254695	CAGCAGG	AK145397|Ppp2r5a|226849|protein phosphatase 2, regulatory subunit B (B56), alpha isoform	BC059026|Ppp2r5a|226849|protein phosphatase 2, regulatory subunit B (B56), alpha isoform	NM_144880|Ppp2r5a|226849|protein phosphatase 2, regulatory subunit B (B56), alpha isoform
mm9_v1_chr5_+_135845811_135845865	0.0237865	CAGCAGG	AK079400|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	NM_145414|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AK156651|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AF412029|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AK149521|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5
mm9_v1_chr1_-_59030272_59030346	0.0229912	CAGCAGG	AK036650|Trak2|70827|trafficking protein, kinesin binding 2	AK048261|Trak2|70827|trafficking protein, kinesin binding 2	AK014647|Trak2|70827|trafficking protein, kinesin binding 2	NM_172406|Trak2|70827|trafficking protein, kinesin binding 2
mm9_v1_chr17_+_23940151_23940238	0.0197075	CAGCAGG	AK171001|Srrm2|75956|serine/arginine repetitive matrix 2	NM_175229|Srrm2|75956|serine/arginine repetitive matrix 2	BC019803|Srrm2|75956|serine/arginine repetitive matrix 2	AK090123|Srrm2|75956|serine/arginine repetitive matrix 2	BC092355|Srrm2|75956|serine/arginine repetitive matrix 2	BC037186|Srrm2|75956|serine/arginine repetitive matrix 2
mm9_v1_chr4_-_154460375_154460500	0.0195229	CAGCAGG	AK002550|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	NM_026395|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	AK168192|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	AK003682|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	AK013262|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	AK078396|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)
mm9_v1_chr11_+_61497911_61497965	0.0188514	CAGCAGG	NM_178618|Fam83g|69640|family with sequence similarity 83, member G	BC085279|Fam83g|69640|family with sequence similarity 83, member G	AK028566|Fam83g|69640|family with sequence similarity 83, member G
mm9_v1_chr14_-_35187767_35187878	0.0184952	CAGCAGG	AJ786826|Sncg|20618|synuclein, gamma	AF017255|Sncg|20618|synuclein, gamma	AK141509|Sncg|20618|synuclein, gamma	BC028508|Sncg|20618|synuclein, gamma	NM_011430|Sncg|20618|synuclein, gamma
mm9_v1_chr11_-_59104252_59104253	0.0182587	CAGCAGG	NM_009522|Wnt3a|22416|wingless-related MMTV integration site 3A	X56842|Wnt3a|22416|wingless-related MMTV integration site 3A
mm9_v1_chr8_+_131209533_131209569	0.0170919	CAGCAGG	NM_010578|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chr15_-_60656465_60656634	0.0161382	CAGCAGG	AK139928|Fam84b|399603|family with sequence similarity 84, member B	NM_001162926|Fam84b|399603|family with sequence similarity 84, member B
mm9_v1_chr1_-_134921914_134921968	0.0146689	CAGCAGG	AK028493|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AK161882|Mdm4|17248|transformed mouse 3T3 cell double minute 4	EU568360|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AK083349|Mdm4|17248|transformed mouse 3T3 cell double minute 4	NM_008575|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AK049576|Mdm4|17248|transformed mouse 3T3 cell double minute 4	BC003750|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AK049690|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AK017719|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AF007110|Mdm4|17248|transformed mouse 3T3 cell double minute 4
mm9_v1_chr7_+_148264127_148264198	0.0146021	CAGCAGG	BC090668|Pkp3|56460|plakophilin 3	NM_001162924|Pkp3|56460|plakophilin 3
mm9_v1_chr10_+_77183330_77183343	0.01386	CAGCAGG	NM_010670|Krtap12-1|16694|keratin associated protein 12-1	BC107319|Krtap12-1|16694|keratin associated protein 12-1	BC107320|Krtap12-1|16694|keratin associated protein 12-1
mm9_v1_chr2_-_26207615_26207656	0.0137535	CAGCAGG	AK004089|Dnlz|52838|DNL-type zinc finger	AK142070|Dnlz|52838|DNL-type zinc finger	NM_001139503|Dnlz|52838|DNL-type zinc finger	NM_001139504|Dnlz|52838|DNL-type zinc finger	NM_026828|Dnlz|52838|DNL-type zinc finger
mm9_v1_chr5_-_36740713_36740796	0.0134241	CAGCAGG	BC138873|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	BC138875|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	AK053853|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	AY004316|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	AB093294|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	AK047881|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	NM_030889|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2
mm9_v1_chr15_-_74539748_74539751	0.0122597	CAGCAGG	AK168885|Jrk|16469|jerky	NM_008415|Jrk|16469|jerky
mm9_v1_chr10_+_59740373_59740429	0.0118868	CAGCAGG	NM_001146120|Psap|19156|prosaposin	NM_001146121|Psap|19156|prosaposin	NM_001146122|Psap|19156|prosaposin	NM_001146123|Psap|19156|prosaposin	NM_011179|Psap|19156|prosaposin	AK167902|Psap|19156|prosaposin	AK151686|Psap|19156|prosaposin	AK152203|Psap|19156|prosaposin
mm9_v1_chr10_+_42481292_42481301	0.0101278	CAGCAGG	BC059816|Sec63|140740|SEC63-like (S. cerevisiae)	NM_153055|Sec63|140740|SEC63-like (S. cerevisiae)
mm9_v1_chrX_+_71528035_71528145	0.00952681	CAGCAGG	NM_001173547|Taz|66826|tafazzin	NM_181516|Taz|66826|tafazzin	AK172563|Taz|66826|tafazzin	AK019872|Taz|66826|tafazzin	AK076481|Taz|66826|tafazzin	AK160327|Taz|66826|tafazzin	AK170662|Taz|66826|tafazzin	AK004035|Taz|66826|tafazzin	AK075615|Taz|66826|tafazzin	BC015305|Taz|66826|tafazzin
mm9_v1_chr3_+_87774988_87775050	0.0094464	CAGCAGG	AK031207|Nes|18008|nestin	AK012622|Nes|18008|nestin	BC062893|Nes|18008|nestin	NM_016701|Nes|18008|nestin	BC060693|Nes|18008|nestin	AF076623|Nes|18008|nestin
mm9_v1_chr4_-_118130054_118130099	0.00864791	CAGCAGG	AF360122|Mpl|17480|myeloproliferative leukemia virus oncogene	X73677|Mpl|17480|myeloproliferative leukemia virus oncogene	BC146612|Mpl|17480|myeloproliferative leukemia virus oncogene	BC101943|Mpl|17480|myeloproliferative leukemia virus oncogene	BC103513|Mpl|17480|myeloproliferative leukemia virus oncogene	BC103514|Mpl|17480|myeloproliferative leukemia virus oncogene	BC103515|Mpl|17480|myeloproliferative leukemia virus oncogene	BC146613|Mpl|17480|myeloproliferative leukemia virus oncogene	Z22649|Mpl|17480|myeloproliferative leukemia virus oncogene	AK041166|Mpl|17480|myeloproliferative leukemia virus oncogene	NM_001122949|Mpl|17480|myeloproliferative leukemia virus oncogene	NM_010823|Mpl|17480|myeloproliferative leukemia virus oncogene
mm9_v1_chr10_+_79516232_79516445	0.00802289	CAGCAGG	D87896|Gpx4|625249|glutathione peroxidase 4	NM_008162|Gpx4|625249|glutathione peroxidase 4	AF045768|Gpx4|625249|glutathione peroxidase 4	AK167881|Gpx4|625249|glutathione peroxidase 4	AK006441|Gpx4|625249|glutathione peroxidase 4	AK160389|Gpx4|625249|glutathione peroxidase 4	AK168027|Gpx4|625249|glutathione peroxidase 4	AF045769|Gpx4|625249|glutathione peroxidase 4	AK160509|Gpx4|625249|glutathione peroxidase 4	BC083137|Gpx4|625249|glutathione peroxidase 4
mm9_v1_chrX_-_45561726_45561881	0.00639397	CAGCAGG	BC042618|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK035745|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK079248|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK032252|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK032233|Zdhhc9|208884|zinc finger, DHHC domain containing 9	NM_172465|Zdhhc9|208884|zinc finger, DHHC domain containing 9
mm9_v1_chr15_-_78325448_78325495	0.00413573	CAGCAGG	AK035289|Il2rb|16185|interleukin 2 receptor, beta chain	M28052|Il2rb|16185|interleukin 2 receptor, beta chain	BC026869|Il2rb|16185|interleukin 2 receptor, beta chain	AK169481|Il2rb|16185|interleukin 2 receptor, beta chain	AK157572|Il2rb|16185|interleukin 2 receptor, beta chain	AK017288|Il2rb|16185|interleukin 2 receptor, beta chain	NM_008368|Il2rb|16185|interleukin 2 receptor, beta chain
mm9_v1_chr18_-_61371233_61371266	0.00126711	CAGCAGG	AK052942|Slc26a2|13521|solute carrier family 26 (sulfate transporter), member 2	NM_007885|Slc26a2|13521|solute carrier family 26 (sulfate transporter), member 2
