mm9_v1_chr13_-_56280161_56280245	17.4988	CDX1,2,4.p2	AK036643|Tifab|212937|TRAF-interacting protein with forkhead-associated domain, family member B	NM_001168615|Tifab|212937|TRAF-interacting protein with forkhead-associated domain, family member B	NM_145976|Tifab|212937|TRAF-interacting protein with forkhead-associated domain, family member B
mm9_v1_chr18_+_60963495_60963509	16.3338	CDX1,2,4.p2	AK002232|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	AK020607|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	NM_001042605|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	NM_010545|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	BC003476|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	BC096435|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	X07129|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)
mm9_v1_chr11_+_82988687_82988701	15.7026	CDX1,2,4.p2	BC044865|Slfn4|20558|schlafen 4	NM_011410|Slfn4|20558|schlafen 4	AK137559|Slfn4|20558|schlafen 4	AK137689|Slfn4|20558|schlafen 4
mm9_v1_chr5_+_115373272_115373294	15.5975	CDX1,2,4.p2	AK150863|Oasl1|231655|2'-5' oligoadenylate synthetase-like 1	AK165578|Oasl1|231655|2'-5' oligoadenylate synthetase-like 1
mm9_v1_chr3_+_109376824_109376976	15.3747	CDX1,2,4.p2	AF140280|Vav3|57257|vav 3 oncogene	NM_146139|Vav3|57257|vav 3 oncogene	AK147053|Vav3|57257|vav 3 oncogene	BC027242|Vav3|57257|vav 3 oncogene
mm9_v1_chr3_+_95330700_95330810	15.1841	CDX1,2,4.p2	AK028366|Ctss|13040|cathepsin S	NM_021281|Ctss|13040|cathepsin S	AJ002386|Ctss|13040|cathepsin S	AK152191|Ctss|13040|cathepsin S	AF038546|Ctss|13040|cathepsin S	AK150274|Ctss|13040|cathepsin S	BC011104|Ctss|13040|cathepsin S	BC002125|Ctss|13040|cathepsin S
mm9_v1_chr9_-_88626434_88626600	14.8095	CDX1,2,4.p2	AK165576|Bcl2a1d|12047|B-cell leukemia/lymphoma 2 related protein A1d	BC027536|Bcl2a1d|12047|B-cell leukemia/lymphoma 2 related protein A1d
mm9_v1_chr11_-_98859189_98859196	14.3197	CDX1,2,4.p2	U01915|Top2a|21973|topoisomerase (DNA) II alpha
mm9_v1_chr3_-_15426426_15426426	14.2891	CDX1,2,4.p2	AB112022|Sirpb1a|320832|signal-regulatory protein beta 1A	NM_001002898|Sirpb1a|320832|signal-regulatory protein beta 1A
mm9_v1_chr17_+_34442837_34442976	13.978	CDX1,2,4.p2	AK155968|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	X52642|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	BC132165|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	BC132163|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	AK160485|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	X52641|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	X07239|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	M36940|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	D90032|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	U28489|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	U28490|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	M36939|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	D90275|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	X00958|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	M28408|H2-Eb1|14969|histocompatibility 2, class II antigen E beta
mm9_v1_chr3_-_15748418_15748511	13.5312	CDX1,2,4.p2	AK036935|Sirpb1a|320832|signal-regulatory protein beta 1A	DQ055453|LOC100038947|100038947|signal-regulatory protein beta 1-like	NM_001173459|LOC100038947|100038947|signal-regulatory protein beta 1-like	AB112023|Sirpb1a|320832|signal-regulatory protein beta 1A	AK170671|Sirpb1a|320832|signal-regulatory protein beta 1A	AK054545|Sirpb1a|320832|signal-regulatory protein beta 1A	BC145417|Sirpb1a|320832|signal-regulatory protein beta 1A	BC145418|Sirpb1a|320832|signal-regulatory protein beta 1A	AB112024|Sirpb1a|320832|signal-regulatory protein beta 1A	AK040982|Sirpb1a|320832|signal-regulatory protein beta 1A	AK155731|Sirpb1a|320832|signal-regulatory protein beta 1A	AK041165|Sirpb1a|320832|signal-regulatory protein beta 1A	AB109404|Sirpb1a|320832|signal-regulatory protein beta 1A
mm9_v1_chr19_-_41069024_41069024	13.5113	CDX1,2,4.p2	NM_008528|Blnk|17060|B-cell linker	Y17159|Blnk|17060|B-cell linker
mm9_v1_chr19_+_12535536_12535672	13.0431	CDX1,2,4.p2	L20315|Mpeg1|17476|macrophage expressed gene 1	BC129843|Mpeg1|17476|macrophage expressed gene 1	BC129844|Mpeg1|17476|macrophage expressed gene 1
mm9_v1_chr19_+_12873115_12873132	12.6939	CDX1,2,4.p2	BC026563|Lpxn|107321|leupaxin
mm9_v1_chr14_+_51748742_51748810	12.1546	CDX1,2,4.p2	NM_030098|Rnase6|78416|ribonuclease, RNase A family, 6	AY545655|Rnase6|78416|ribonuclease, RNase A family, 6	BC094892|Rnase6|78416|ribonuclease, RNase A family, 6	AK020595|Rnase6|78416|ribonuclease, RNase A family, 6	BC132632|Rnase6|78416|ribonuclease, RNase A family, 6	BC132634|Rnase6|78416|ribonuclease, RNase A family, 6
mm9_v1_chr8_+_90812964_90813045	12.0925	CDX1,2,4.p2	NM_001037723|Adcy7|11513|adenylate cyclase 7	AK154262|Adcy7|11513|adenylate cyclase 7	AK138911|Adcy7|11513|adenylate cyclase 7
mm9_v1_chr1_+_175560938_175561047	11.7113	CDX1,2,4.p2	NM_175026|Pyhin1|236312|pyrin and HIN domain family, member 1	AK080371|Pyhin1|236312|pyrin and HIN domain family, member 1	BC096384|Pyhin1|236312|pyrin and HIN domain family, member 1
mm9_v1_chr19_+_53403902_53404133	11.6558	CDX1,2,4.p2	NM_010847|Mxi1|17859|Max interacting protein 1	AK144219|Mxi1|17859|Max interacting protein 1	AK017637|Mxi1|17859|Max interacting protein 1	AK140465|Mxi1|17859|Max interacting protein 1	L38822|Mxi1|17859|Max interacting protein 1	U24674|Mxi1|17859|Max interacting protein 1
mm9_v1_chr10_-_88875526_88875657	11.302	CDX1,2,4.p2	AK171905|Gas2l3|237436|growth arrest-specific 2 like 3	AK136819|Gas2l3|237436|growth arrest-specific 2 like 3
mm9_v1_chrX_+_103338609_103338616	11.1915	CDX1,2,4.p2	AK170044|Tlr13|279572|toll-like receptor 13	AY510706|Tlr13|279572|toll-like receptor 13	NM_205820|Tlr13|279572|toll-like receptor 13
mm9_v1_chr1_+_132762248_132762329	11.1638	CDX1,2,4.p2	BC116674|Faim3|69169|Fas apoptotic inhibitory molecule 3	BC118505|Faim3|69169|Fas apoptotic inhibitory molecule 3
mm9_v1_chr6_-_70067577_70067640	11.1384	CDX1,2,4.p2	M95574|Gm10883|384419|predicted gene 10883
mm9_v1_chr5_+_115373246_115373254	11.1109	CDX1,2,4.p2	AK078690|Oasl1|231655|2'-5' oligoadenylate synthetase-like 1	NM_145209|Oasl1|231655|2'-5' oligoadenylate synthetase-like 1
mm9_v1_chr6_-_129572590_129572688	11.1082	CDX1,2,4.p2	AY860972|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1	CT010384|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1	AF039026|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1	BC057147|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1	AK040436|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1	NM_033078|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1
mm9_v1_chr19_+_12535268_12535270	11.0964	CDX1,2,4.p2	AK030216|Mpeg1|17476|macrophage expressed gene 1	NM_010821|Mpeg1|17476|macrophage expressed gene 1
mm9_v1_chr17_+_34442808_34442831	10.6896	CDX1,2,4.p2	NM_010382|H2-Eb1|14969|histocompatibility 2, class II antigen E beta
mm9_v1_chr2_+_163899842_163899948	10.5756	CDX1,2,4.p2	BC054521|Stk4|58231|serine/threonine kinase 4	AF271360|Stk4|58231|serine/threonine kinase 4	AK028838|Stk4|58231|serine/threonine kinase 4	NM_021420|Stk4|58231|serine/threonine kinase 4
mm9_v1_chr5_+_90919768_90919776	10.5447	CDX1,2,4.p2	BC066206|Afp|11576|alpha fetoprotein
mm9_v1_chr15_+_102289600_102289666	10.4314	CDX1,2,4.p2	NM_001170911|Prr13|66151|proline rich 13	NM_025385|Prr13|66151|proline rich 13	AK003850|Prr13|66151|proline rich 13	AK002430|Prr13|66151|proline rich 13	AK008894|Prr13|66151|proline rich 13	AK154583|Prr13|66151|proline rich 13	BC016234|Prr13|66151|proline rich 13	AK181585|Prr13|66151|proline rich 13
mm9_v1_chr14_-_56407622_56407693	10.3288	CDX1,2,4.p2	AF178953|Ripk3|56532|receptor-interacting serine-threonine kinase 3	BC029210|Ripk3|56532|receptor-interacting serine-threonine kinase 3	AK154505|Ripk3|56532|receptor-interacting serine-threonine kinase 3	AK012177|Ripk3|56532|receptor-interacting serine-threonine kinase 3	NM_001164107|Ripk3|56532|receptor-interacting serine-threonine kinase 3	NM_001164108|Ripk3|56532|receptor-interacting serine-threonine kinase 3	NM_019955|Ripk3|56532|receptor-interacting serine-threonine kinase 3
mm9_v1_chr2_-_122420914_122421005	10.0562	CDX1,2,4.p2	AK167378|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)
mm9_v1_chr16_-_4679664_4679776	9.97857	CDX1,2,4.p2	AK143624|Coro7|78885|coronin 7	AK018739|Coro7|78885|coronin 7	AK088155|Coro7|78885|coronin 7	AK041000|Coro7|78885|coronin 7	AK037894|Coro7|78885|coronin 7	BC061006|Coro7|78885|coronin 7	NM_030205|Coro7|78885|coronin 7	AK040408|Coro7|78885|coronin 7	AK150051|Coro7|78885|coronin 7	AK039585|Coro7|78885|coronin 7
mm9_v1_chr15_+_103284200_103284376	9.91351	CDX1,2,4.p2	AK040192|Nckap1l|105855|NCK associated protein 1 like	NM_153505|Nckap1l|105855|NCK associated protein 1 like	AK149862|Nckap1l|105855|NCK associated protein 1 like	AK083390|Nckap1l|105855|NCK associated protein 1 like	BC037096|Nckap1l|105855|NCK associated protein 1 like	AK134039|Nckap1l|105855|NCK associated protein 1 like	BC030040|Nckap1l|105855|NCK associated protein 1 like	BC007186|Nckap1l|105855|NCK associated protein 1 like
mm9_v1_chr18_-_35900005_35900208	9.52803	CDX1,2,4.p2	DQ910493|Tmem173|72512|transmembrane protein 173	AK153868|Tmem173|72512|transmembrane protein 173	AK146284|Tmem173|72512|transmembrane protein 173	AX775911|Tmem173|72512|transmembrane protein 173	AK077788|Tmem173|72512|transmembrane protein 173	AK157370|Tmem173|72512|transmembrane protein 173	AK158458|Tmem173|72512|transmembrane protein 173	BC046640|Tmem173|72512|transmembrane protein 173	AK171612|Tmem173|72512|transmembrane protein 173	AK012006|Tmem173|72512|transmembrane protein 173	AK171065|Tmem173|72512|transmembrane protein 173	AK171203|Tmem173|72512|transmembrane protein 173	AK089405|Tmem173|72512|transmembrane protein 173	AK170724|Tmem173|72512|transmembrane protein 173	NM_028261|Tmem173|72512|transmembrane protein 173
mm9_v1_chr11_+_87569075_87569079	9.33111	CDX1,2,4.p2	AK020764|A430104N18Rik|78591|RIKEN cDNA A430104N18 gene
mm9_v1_chr17_+_37006518_37006546	9.27392	CDX1,2,4.p2	NM_011280|Trim10|19824|tripartite motif-containing 10	AK011082|Trim10|19824|tripartite motif-containing 10	AF134811|Trim10|19824|tripartite motif-containing 10	BC051632|Trim10|19824|tripartite motif-containing 10	AF220121|Trim10|19824|tripartite motif-containing 10
mm9_v1_chr1_+_132762353_132762436	9.10916	CDX1,2,4.p2	AK007714|Faim3|69169|Fas apoptotic inhibitory molecule 3	AK155943|Faim3|69169|Fas apoptotic inhibitory molecule 3	NM_026976|Faim3|69169|Fas apoptotic inhibitory molecule 3	AK156523|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227385|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227386|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227387|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227388|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227389|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227390|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227391|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227392|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227393|Faim3|69169|Fas apoptotic inhibitory molecule 3
mm9_v1_chr19_+_12873063_12873098	9.01969	CDX1,2,4.p2	AK039922|Lpxn|107321|leupaxin	AB071194|Lpxn|107321|leupaxin	NM_134152|Lpxn|107321|leupaxin
mm9_v1_chr1_+_173847645_173847838	8.97717	CDX1,2,4.p2	AF248636|Slamf6|30925|SLAM family member 6	AF248635|Slamf6|30925|SLAM family member 6	NM_030710|Slamf6|30925|SLAM family member 6	BC030031|Slamf6|30925|SLAM family member 6	AB196808|Slamf6|30925|SLAM family member 6	AB196809|Slamf6|30925|SLAM family member 6	AB196810|Slamf6|30925|SLAM family member 6	AB196811|Slamf6|30925|SLAM family member 6	AB196836|Slamf6|30925|SLAM family member 6	EU591721|Slamf6|30925|SLAM family member 6
mm9_v1_chr7_-_25873560_25873562	8.94598	CDX1,2,4.p2	
mm9_v1_chr5_-_92776160_92776261	8.7572	CDX1,2,4.p2	AK152838|Cxcl10|15945|chemokine (C-X-C motif) ligand 10
mm9_v1_chrX_-_9030859_9030884	8.59143	CDX1,2,4.p2	AK160031|Cybb|13058|cytochrome b-245, beta polypeptide
mm9_v1_chr10_-_61960613_61960625	8.57989	CDX1,2,4.p2	AK087960|Srgn|19073|serglycin
mm9_v1_chr19_+_3935169_3935313	8.53631	CDX1,2,4.p2	NM_001161428|Unc93b1|54445|unc-93 homolog B1 (C. elegans)	NM_019449|Unc93b1|54445|unc-93 homolog B1 (C. elegans)	BC018388|Unc93b1|54445|unc-93 homolog B1 (C. elegans)	AK030488|Unc93b1|54445|unc-93 homolog B1 (C. elegans)	AK039526|Unc93b1|54445|unc-93 homolog B1 (C. elegans)	AK165060|Unc93b1|54445|unc-93 homolog B1 (C. elegans)	AK155556|Unc93b1|54445|unc-93 homolog B1 (C. elegans)	AK162535|Unc93b1|54445|unc-93 homolog B1 (C. elegans)
mm9_v1_chr5_-_134705423_134705497	8.46615	CDX1,2,4.p2	L11455|Ncf1|17969|neutrophil cytosolic factor 1	BC055836|Ncf1|17969|neutrophil cytosolic factor 1	AK152386|Ncf1|17969|neutrophil cytosolic factor 1	AK151593|Ncf1|17969|neutrophil cytosolic factor 1	AK149668|Ncf1|17969|neutrophil cytosolic factor 1	AK171559|Ncf1|17969|neutrophil cytosolic factor 1	AK150945|Ncf1|17969|neutrophil cytosolic factor 1	AK151316|Ncf1|17969|neutrophil cytosolic factor 1	AK152992|Ncf1|17969|neutrophil cytosolic factor 1	AK162308|Ncf1|17969|neutrophil cytosolic factor 1	AK162623|Ncf1|17969|neutrophil cytosolic factor 1	AK170462|Ncf1|17969|neutrophil cytosolic factor 1	AB002663|Ncf1|17969|neutrophil cytosolic factor 1	AK149619|Ncf1|17969|neutrophil cytosolic factor 1	AK149732|Ncf1|17969|neutrophil cytosolic factor 1	NM_010876|Ncf1|17969|neutrophil cytosolic factor 1
mm9_v1_chr5_+_90919758_90919765	7.9285	CDX1,2,4.p2	AK075972|Afp|11576|alpha fetoprotein	AK076197|Afp|11576|alpha fetoprotein	AK146513|Afp|11576|alpha fetoprotein	AK146524|Afp|11576|alpha fetoprotein	AK168426|Afp|11576|alpha fetoprotein	AK168574|Afp|11576|alpha fetoprotein	AK168751|Afp|11576|alpha fetoprotein	AK169046|Afp|11576|alpha fetoprotein	AK169054|Afp|11576|alpha fetoprotein	AK010934|Afp|11576|alpha fetoprotein	AK076053|Afp|11576|alpha fetoprotein	AK145975|Afp|11576|alpha fetoprotein	AK168576|Afp|11576|alpha fetoprotein	AK168883|Afp|11576|alpha fetoprotein	AK169147|Afp|11576|alpha fetoprotein	AK167549|Afp|11576|alpha fetoprotein	V00743|Afp|11576|alpha fetoprotein
mm9_v1_chr11_-_83388330_83388380	7.59334	CDX1,2,4.p2	AK151953|Ccl9|20308|chemokine (C-C motif) ligand 9
mm9_v1_chr4_-_46579311_46579311	7.55299	CDX1,2,4.p2	AK030097|Coro2a|107684|coronin, actin binding protein 2A	NM_178893|Coro2a|107684|coronin, actin binding protein 2A
mm9_v1_chr19_-_30623890_30624012	7.49252	CDX1,2,4.p2	AF030433|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	BC050189|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	NM_010051|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	AK141693|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	AK144119|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)
mm9_v1_chr7_+_109614267_109614297	7.47828	CDX1,2,4.p2	AK200772|Rrm1|20133|ribonucleotide reductase M1	AK203165|Rrm1|20133|ribonucleotide reductase M1	AK209968|Rrm1|20133|ribonucleotide reductase M1	AK211974|Rrm1|20133|ribonucleotide reductase M1
mm9_v1_chr2_+_84820615_84820637	7.37623	CDX1,2,4.p2	AK156715|Prg2|19074|proteoglycan 2, bone marrow	AK010901|Prg2|19074|proteoglycan 2, bone marrow	NM_008920|Prg2|19074|proteoglycan 2, bone marrow	BC109348|Prg2|19074|proteoglycan 2, bone marrow
mm9_v1_chr10_-_111434265_111434319	7.36932	CDX1,2,4.p2	AK137557|Glipr1|73690|GLI pathogenesis-related 1 (glioma)	AK170051|Glipr1|73690|GLI pathogenesis-related 1 (glioma)	BC098231|Glipr1|73690|GLI pathogenesis-related 1 (glioma)	NM_028608|Glipr1|73690|GLI pathogenesis-related 1 (glioma)
mm9_v1_chr7_+_117916117_117916304	7.31692	CDX1,2,4.p2	BC040366|Ampd3|11717|adenosine monophosphate deaminase 3	NM_009667|Ampd3|11717|adenosine monophosphate deaminase 3	AK133465|Ampd3|11717|adenosine monophosphate deaminase 3	BC056380|Ampd3|11717|adenosine monophosphate deaminase 3	AK171276|Ampd3|11717|adenosine monophosphate deaminase 3
mm9_v1_chr17_-_32557916_32557924	7.25723	CDX1,2,4.p2	AF149837|Pglyrp2|57757|peptidoglycan recognition protein 2	AF149838|Pglyrp2|57757|peptidoglycan recognition protein 2	AF315578|Pglyrp2|57757|peptidoglycan recognition protein 2	AF315584|Pglyrp2|57757|peptidoglycan recognition protein 2	AF317548|Pglyrp2|57757|peptidoglycan recognition protein 2	AK050019|Pglyrp2|57757|peptidoglycan recognition protein 2	NM_021319|Pglyrp2|57757|peptidoglycan recognition protein 2
mm9_v1_chr15_+_102126686_102126729	7.22246	CDX1,2,4.p2	BC082603|Espl1|105988|extra spindle poles-like 1 (S. cerevisiae)	NM_001014976|Espl1|105988|extra spindle poles-like 1 (S. cerevisiae)
mm9_v1_chr10_-_111434231_111434250	7.16818	CDX1,2,4.p2	BC025083|Glipr1|73690|GLI pathogenesis-related 1 (glioma)	AK155009|Glipr1|73690|GLI pathogenesis-related 1 (glioma)	AK010768|Glipr1|73690|GLI pathogenesis-related 1 (glioma)
mm9_v1_chr14_+_78304045_78304240	7.10791	CDX1,2,4.p2	AK136055|Epsti1|108670|epithelial stromal interaction 1 (breast)	NM_029495|Epsti1|108670|epithelial stromal interaction 1 (breast)	NM_178825|Epsti1|108670|epithelial stromal interaction 1 (breast)	AK135710|Epsti1|108670|epithelial stromal interaction 1 (breast)	AY239224|Epsti1|108670|epithelial stromal interaction 1 (breast)	BC021821|Epsti1|108670|epithelial stromal interaction 1 (breast)	AK077376|Epsti1|108670|epithelial stromal interaction 1 (breast)	BC020120|Epsti1|108670|epithelial stromal interaction 1 (breast)	AK017174|Epsti1|108670|epithelial stromal interaction 1 (breast)	AY239223|Epsti1|108670|epithelial stromal interaction 1 (breast)	AK030289|Epsti1|108670|epithelial stromal interaction 1 (breast)	AK077223|Epsti1|108670|epithelial stromal interaction 1 (breast)
mm9_v1_chr5_+_136559785_136559909	7.05875	CDX1,2,4.p2	AK154335|Rasa4|54153|RAS p21 protein activator 4	AK155146|Rasa4|54153|RAS p21 protein activator 4	NM_001039103|Rasa4|54153|RAS p21 protein activator 4	NM_133914|Rasa4|54153|RAS p21 protein activator 4	BC049381|Rasa4|54153|RAS p21 protein activator 4	AK014220|Rasa4|54153|RAS p21 protein activator 4	AK133565|Rasa4|54153|RAS p21 protein activator 4	BC027230|Rasa4|54153|RAS p21 protein activator 4	AY591339|Rasa4|54153|RAS p21 protein activator 4	DQ317932|Rasa4|54153|RAS p21 protein activator 4	AK220218|Rasa4|54153|RAS p21 protein activator 4
mm9_v1_chr16_+_45224449_45224465	6.85967	CDX1,2,4.p2	AK041334|Btla|208154|B and T lymphocyte associated	BC108963|Btla|208154|B and T lymphocyte associated	BC108964|Btla|208154|B and T lymphocyte associated	NM_001037719|Btla|208154|B and T lymphocyte associated	NM_177584|Btla|208154|B and T lymphocyte associated	AY293285|Btla|208154|B and T lymphocyte associated
mm9_v1_chr4_-_132352272_132352331	6.85148	CDX1,2,4.p2	BC013712|BC013712|230787|cDNA sequence BC013712	AK150471|BC013712|230787|cDNA sequence BC013712	AK153536|BC013712|230787|cDNA sequence BC013712	NM_001033308|BC013712|230787|cDNA sequence BC013712	AK137465|BC013712|230787|cDNA sequence BC013712	AK149775|BC013712|230787|cDNA sequence BC013712	AK171009|BC013712|230787|cDNA sequence BC013712	AK171858|BC013712|230787|cDNA sequence BC013712	AK155536|BC013712|230787|cDNA sequence BC013712	BC151122|BC013712|230787|cDNA sequence BC013712	BC151126|BC013712|230787|cDNA sequence BC013712
mm9_v1_chr11_+_83037063_83037095	6.70161	CDX1,2,4.p2	AK028715|AI662270|100043636|expressed sequence AI662270	AK168001|AI662270|100043636|expressed sequence AI662270
mm9_v1_chr4_-_133650937_133651017	6.57162	CDX1,2,4.p2	BC027495|Cd52|23833|CD52 antigen	AK088161|Cd52|23833|CD52 antigen	X76696|Cd52|23833|CD52 antigen	M55561|Cd52|23833|CD52 antigen	AK155728|Cd52|23833|CD52 antigen	NM_013706|Cd52|23833|CD52 antigen
mm9_v1_chr13_-_51829951_51830128	6.46604	CDX1,2,4.p2	AK150911|Sema4d|20354|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
mm9_v1_chr19_-_41068625_41068698	6.46286	CDX1,2,4.p2	AJ222814|Blnk|17060|B-cell linker	AK172016|Blnk|17060|B-cell linker	BC059785|Blnk|17060|B-cell linker	AK089704|Blnk|17060|B-cell linker	AF068182|Blnk|17060|B-cell linker	AB015290|Blnk|17060|B-cell linker
mm9_v1_chr9_-_21767872_21768019	6.42579	CDX1,2,4.p2	BC003953|Epor|13857|erythropoietin receptor	J04843|Epor|13857|erythropoietin receptor	AK139031|Epor|13857|erythropoietin receptor	BC046282|Epor|13857|erythropoietin receptor	NM_010149|Epor|13857|erythropoietin receptor
mm9_v1_chr7_+_4225744_4225790	6.34136	CDX1,2,4.p2	NM_011093|Pira6|18729|paired-Ig-like receptor A6	U96687|Pira6|18729|paired-Ig-like receptor A6	AF041035|Pira6|18729|paired-Ig-like receptor A6	NM_008848|Pira6|18729|paired-Ig-like receptor A6
mm9_v1_chr9_+_89094190_89094197	6.33503	CDX1,2,4.p2	CT010250|Bcl2a1a|12044|B-cell leukemia/lymphoma 2 related protein A1a
mm9_v1_chr16_-_32165509_32165642	6.16972	CDX1,2,4.p2	AK084858|Lrrc33|224109|leucine rich repeat containing 33	AK088770|Lrrc33|224109|leucine rich repeat containing 33	AK128897|Lrrc33|224109|leucine rich repeat containing 33	NM_146069|Lrrc33|224109|leucine rich repeat containing 33	BC027411|Lrrc33|224109|leucine rich repeat containing 33	AK167934|Lrrc33|224109|leucine rich repeat containing 33	AK042502|Lrrc33|224109|leucine rich repeat containing 33
mm9_v1_chr11_+_100442602_100442668	6.14671	CDX1,2,4.p2	AK190081|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	AK211066|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr5_+_145888588_145888809	6.1232	CDX1,2,4.p2	AK192837|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B
mm9_v1_chr6_-_122560002_122560015	6.04983	CDX1,2,4.p2	BC103565|Gdf3|14562|growth differentiation factor 3	BC101963|Gdf3|14562|growth differentiation factor 3	BC101964|Gdf3|14562|growth differentiation factor 3	BC101965|Gdf3|14562|growth differentiation factor 3	AK082877|Gdf3|14562|growth differentiation factor 3	AK146174|Gdf3|14562|growth differentiation factor 3	AK167962|Gdf3|14562|growth differentiation factor 3
mm9_v1_chr5_-_17355533_17355611	6.03568	CDX1,2,4.p2	AK172162|Cd36|12491|CD36 antigen	BC010262|Cd36|12491|CD36 antigen	AK150648|Cd36|12491|CD36 antigen	NM_001159556|Cd36|12491|CD36 antigen	NM_001159557|Cd36|12491|CD36 antigen
mm9_v1_chr7_-_3796619_3796646	6.02346	CDX1,2,4.p2	U96683|Pira2|18725|paired-Ig-like receptor A2	AF288356|Lilrb3|18733|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3	U96682|Pira1|18722|paired-Ig-like receptor A1	BC026937|Lilrb3|18733|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3
mm9_v1_chr5_-_123183537_123183571	5.9176	CDX1,2,4.p2	AK213252|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chr1_+_133535033_133535043	5.9168	CDX1,2,4.p2	AK145875|Ctse|13034|cathepsin E
mm9_v1_chr2_+_129442079_129442192	5.91467	CDX1,2,4.p2	AK195466|Sirpa|19261|signal-regulatory protein alpha
mm9_v1_chr11_+_106612525_106612642	5.90352	CDX1,2,4.p2	BC139224|Gm885|380732|predicted gene 885	BC139225|Gm885|380732|predicted gene 885	BC145580|Gm885|380732|predicted gene 885	BC145582|Gm885|380732|predicted gene 885	AK169925|Gm885|380732|predicted gene 885	AB542953|Gm885|380732|predicted gene 885	AK136488|Gm885|380732|predicted gene 885	AK137500|Gm885|380732|predicted gene 885	AK171381|Gm885|380732|predicted gene 885	NM_001033435|Gm885|380732|predicted gene 885	AK151814|Gm885|380732|predicted gene 885	AK170947|Gm885|380732|predicted gene 885	AK153506|Gm885|380732|predicted gene 885
mm9_v1_chr19_+_11518042_11518091	5.84794	CDX1,2,4.p2	AK088780|Ms4a4b|60361|membrane-spanning 4-domains, subfamily A, member 4B	AK080934|Ms4a4b|60361|membrane-spanning 4-domains, subfamily A, member 4B	NM_021718|Ms4a4b|60361|membrane-spanning 4-domains, subfamily A, member 4B	AK039824|Ms4a4b|60361|membrane-spanning 4-domains, subfamily A, member 4B	AK037569|Ms4a4b|60361|membrane-spanning 4-domains, subfamily A, member 4B	AK138737|Ms4a4b|60361|membrane-spanning 4-domains, subfamily A, member 4B	AK172495|Ms4a4b|60361|membrane-spanning 4-domains, subfamily A, member 4B	AF230640|Ms4a4b|60361|membrane-spanning 4-domains, subfamily A, member 4B	AF237913|Ms4a4b|60361|membrane-spanning 4-domains, subfamily A, member 4B	AF354929|Ms4a4b|60361|membrane-spanning 4-domains, subfamily A, member 4B	BC028433|Ms4a4b|60361|membrane-spanning 4-domains, subfamily A, member 4B	AK088631|Ms4a4b|60361|membrane-spanning 4-domains, subfamily A, member 4B
mm9_v1_chr19_+_11592938_11593140	5.7543	CDX1,2,4.p2	AF237909|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	NM_027209|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK172345|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	BC027425|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK075671|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK007613|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B
mm9_v1_chr7_-_148452299_148452324	5.69354	CDX1,2,4.p2	NM_016850|Irf7|54123|interferon regulatory factor 7	U73037|Irf7|54123|interferon regulatory factor 7	AK004349|Irf7|54123|interferon regulatory factor 7	AK150608|Irf7|54123|interferon regulatory factor 7	AK158378|Irf7|54123|interferon regulatory factor 7	AK158403|Irf7|54123|interferon regulatory factor 7	AK089869|Irf7|54123|interferon regulatory factor 7	AK002830|Irf7|54123|interferon regulatory factor 7	AK079685|Irf7|54123|interferon regulatory factor 7	AK150403|Irf7|54123|interferon regulatory factor 7	AK151470|Irf7|54123|interferon regulatory factor 7	AK152401|Irf7|54123|interferon regulatory factor 7	AK152403|Irf7|54123|interferon regulatory factor 7	AK153054|Irf7|54123|interferon regulatory factor 7	AK155950|Irf7|54123|interferon regulatory factor 7	AK159142|Irf7|54123|interferon regulatory factor 7	AK159883|Irf7|54123|interferon regulatory factor 7
mm9_v1_chr3_-_144595486_144595494	5.63053	CDX1,2,4.p2	BC139088|AI747448|99709|expressed sequence AI747448	BC139089|AI747448|99709|expressed sequence AI747448	AK136515|AI747448|99709|expressed sequence AI747448	NM_001033199|AI747448|99709|expressed sequence AI747448
mm9_v1_chr10_+_57370786_57370799	5.61979	CDX1,2,4.p2	BC052351|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039050|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001190402|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	BC087894|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific
mm9_v1_chr9_+_21142267_21142297	5.61205	CDX1,2,4.p2	AK166695|Slc44a2|68682|solute carrier family 44, member 2	AK048648|Slc44a2|68682|solute carrier family 44, member 2	BC031535|Slc44a2|68682|solute carrier family 44, member 2	NM_152808|Slc44a2|68682|solute carrier family 44, member 2
mm9_v1_chr4_+_102242664_102242699	5.47226	CDX1,2,4.p2	NM_001177980|Pde4b|18578|phosphodiesterase 4B, cAMP specific	BC023751|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr5_-_17341534_17341556	5.4527	CDX1,2,4.p2	L23108|Cd36|12491|CD36 antigen	AK151355|Cd36|12491|CD36 antigen
mm9_v1_chr6_-_130287518_130287643	5.40188	CDX1,2,4.p2	U56404|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	U56405|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC101952|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC103543|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC103544|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC103545|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC132524|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC132526|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC145192|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC145193|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	U10305|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	AK159595|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	U49868|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	NM_010648|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	U09739|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3
mm9_v1_chr9_-_66767436_66767566	5.35581	CDX1,2,4.p2	AB232601|Rab8b|235442|RAB8B, member RAS oncogene family	AK031251|Rab8b|235442|RAB8B, member RAS oncogene family	BC157974|Rab8b|235442|RAB8B, member RAS oncogene family	AK051218|Rab8b|235442|RAB8B, member RAS oncogene family	AK084650|Rab8b|235442|RAB8B, member RAS oncogene family	AK155621|Rab8b|235442|RAB8B, member RAS oncogene family	BC059208|Rab8b|235442|RAB8B, member RAS oncogene family	NM_173413|Rab8b|235442|RAB8B, member RAS oncogene family
mm9_v1_chr1_-_175805812_175805992	5.34787	CDX1,2,4.p2	AK087931|Mndal|100040462|myeloid nuclear differentiation antigen like	FJ594740|Mndal|100040462|myeloid nuclear differentiation antigen like
mm9_v1_chr1_-_173579057_173579105	5.25808	CDX1,2,4.p2	AB196816|Slamf7|75345|SLAM family member 7	AB196817|Slamf7|75345|SLAM family member 7	AB196818|Slamf7|75345|SLAM family member 7	AB196819|Slamf7|75345|SLAM family member 7	AB196837|Slamf7|75345|SLAM family member 7	AF467909|Slamf7|75345|SLAM family member 7	AF467910|Slamf7|75345|SLAM family member 7	AF467911|Slamf7|75345|SLAM family member 7	BC011154|Slamf7|75345|SLAM family member 7	AK172665|Slamf7|75345|SLAM family member 7
mm9_v1_chr15_+_102126735_102126806	5.24861	CDX1,2,4.p2	AK129072|Espl1|105988|extra spindle poles-like 1 (S. cerevisiae)	AY588413|Espl1|105988|extra spindle poles-like 1 (S. cerevisiae)	BC145844|Espl1|105988|extra spindle poles-like 1 (S. cerevisiae)	BC145846|Espl1|105988|extra spindle poles-like 1 (S. cerevisiae)
mm9_v1_chr9_-_96379093_96379128	5.23208	CDX1,2,4.p2	AK006703|Rnf7|19823|ring finger protein 7
mm9_v1_chr1_-_167638156_167638224	5.18428	CDX1,2,4.p2	AK158429|Rcsd1|226594|RCSD domain containing 1	AK133961|Rcsd1|226594|RCSD domain containing 1	AK168816|Rcsd1|226594|RCSD domain containing 1	AK171323|Rcsd1|226594|RCSD domain containing 1	NM_001038846|Rcsd1|226594|RCSD domain containing 1	NM_178593|Rcsd1|226594|RCSD domain containing 1
mm9_v1_chr7_-_113358823_113358853	5.18314	CDX1,2,4.p2	AY167973|Gvin1|74558|GTPase, very large interferon inducible 1	AY167974|Gvin1|74558|GTPase, very large interferon inducible 1	AK036418|Gvin1|74558|GTPase, very large interferon inducible 1	AY167972|Gvin1|74558|GTPase, very large interferon inducible 1	AK154796|Gvin1|74558|GTPase, very large interferon inducible 1	NM_001039160|Gvin1|74558|GTPase, very large interferon inducible 1	NM_029000|Gvin1|74558|GTPase, very large interferon inducible 1
mm9_v1_chr7_-_113102453_113102483	5.18314	CDX1,2,4.p2	AY167973|Gvin1|74558|GTPase, very large interferon inducible 1	AY167974|Gvin1|74558|GTPase, very large interferon inducible 1	AK036418|Gvin1|74558|GTPase, very large interferon inducible 1	AY167972|Gvin1|74558|GTPase, very large interferon inducible 1	AK154796|Gvin1|74558|GTPase, very large interferon inducible 1	NM_001039160|Gvin1|74558|GTPase, very large interferon inducible 1	NM_029000|Gvin1|74558|GTPase, very large interferon inducible 1
mm9_v1_chr7_+_134439804_134439861	5.16657	CDX1,2,4.p2	AK156251|Itgal|16408|integrin alpha L	AK172394|Itgal|16408|integrin alpha L	AK154115|Itgal|16408|integrin alpha L	AK169628|Itgal|16408|integrin alpha L	NM_008400|Itgal|16408|integrin alpha L
mm9_v1_chr7_-_21288567_21288567	5.16542	CDX1,2,4.p2	NM_001167154|Gm8693|667543|predicted gene 8693	NM_001167155|Gm4144|100042980|predicted gene 4144
mm9_v1_chr5_+_86500770_86500862	5.16165	CDX1,2,4.p2	AK162655|Stap1|56792|signal transducing adaptor family member 1	AK153661|Stap1|56792|signal transducing adaptor family member 1	BC057898|Stap1|56792|signal transducing adaptor family member 1	AK042475|Stap1|56792|signal transducing adaptor family member 1	BC145550|Stap1|56792|signal transducing adaptor family member 1	BC145828|Stap1|56792|signal transducing adaptor family member 1	BC145830|Stap1|56792|signal transducing adaptor family member 1	AK041474|Stap1|56792|signal transducing adaptor family member 1	NM_019992|Stap1|56792|signal transducing adaptor family member 1	AB036058|Stap1|56792|signal transducing adaptor family member 1
mm9_v1_chr1_+_173612132_173612157	5.15145	CDX1,2,4.p2	AK146173|Cd48|12506|CD48 antigen	AK088027|Cd48|12506|CD48 antigen	AK084984|Cd48|12506|CD48 antigen	BC060977|Cd48|12506|CD48 antigen
mm9_v1_chr12_+_109843975_109843976	5.14169	CDX1,2,4.p2	AK134563|Evl|14026|Ena-vasodilator stimulated phosphoprotein	NM_001163395|Evl|14026|Ena-vasodilator stimulated phosphoprotein
mm9_v1_chr16_-_75909440_75909580	5.13378	CDX1,2,4.p2	AK041340|Samsn1|67742|SAM domain, SH3 domain and nuclear localization signals, 1	AF222928|Samsn1|67742|SAM domain, SH3 domain and nuclear localization signals, 1	AK041566|Samsn1|67742|SAM domain, SH3 domain and nuclear localization signals, 1	AK053946|Samsn1|67742|SAM domain, SH3 domain and nuclear localization signals, 1	BC052906|Samsn1|67742|SAM domain, SH3 domain and nuclear localization signals, 1	BC064778|Samsn1|67742|SAM domain, SH3 domain and nuclear localization signals, 1	DQ333189|Samsn1|67742|SAM domain, SH3 domain and nuclear localization signals, 1	NM_023380|Samsn1|67742|SAM domain, SH3 domain and nuclear localization signals, 1
mm9_v1_chr14_+_48092244_48092299	5.11329	CDX1,2,4.p2	BC049155|Fbxo34|78938|F-box protein 34	AK013711|Fbxo34|78938|F-box protein 34
mm9_v1_chr6_-_122560022_122560104	5.09768	CDX1,2,4.p2	S52658|Gdf3|14562|growth differentiation factor 3	AK160533|Gdf3|14562|growth differentiation factor 3	AK152457|Gdf3|14562|growth differentiation factor 3	NM_008108|Gdf3|14562|growth differentiation factor 3	L06443|Gdf3|14562|growth differentiation factor 3
mm9_v1_chr14_+_48092305_48092319	5.07995	CDX1,2,4.p2	AK171630|Fbxo34|78938|F-box protein 34
mm9_v1_chr17_+_35189798_35189804	4.89926	CDX1,2,4.p2	
mm9_v1_chr6_+_128837604_128837631	4.83759	CDX1,2,4.p2	AY137344|Clec2i|93675|C-type lectin domain family 2, member i	AY137345|Clec2i|93675|C-type lectin domain family 2, member i	AK041724|Clec2i|93675|C-type lectin domain family 2, member i	AY256574|Clec2i|93675|C-type lectin domain family 2, member i	AY256575|Clec2i|93675|C-type lectin domain family 2, member i	AY256576|Clec2i|93675|C-type lectin domain family 2, member i	AF350411|Clec2i|93675|C-type lectin domain family 2, member i	AF121352|Clec2i|93675|C-type lectin domain family 2, member i	BC139192|Clec2i|93675|C-type lectin domain family 2, member i	BC139193|Clec2i|93675|C-type lectin domain family 2, member i	BC145574|Clec2i|93675|C-type lectin domain family 2, member i	NM_020257|Clec2i|93675|C-type lectin domain family 2, member i
mm9_v1_chr5_-_88956788_88956921	4.80829	CDX1,2,4.p2	J00544|Igj|16069|immunoglobulin joining chain	AK078865|Igj|16069|immunoglobulin joining chain	M90766|Igj|16069|immunoglobulin joining chain	BC006026|Igj|16069|immunoglobulin joining chain	AK160344|Igj|16069|immunoglobulin joining chain	NM_152839|Igj|16069|immunoglobulin joining chain
mm9_v1_chr11_+_62413710_62413732	4.78295	CDX1,2,4.p2	
mm9_v1_chr18_-_36926866_36926900	4.74812	CDX1,2,4.p2	
mm9_v1_chr12_+_82049290_82049329	4.71563	CDX1,2,4.p2	AK135336|Srsf5|20384|serine/arginine-rich splicing factor 5
mm9_v1_chr11_-_83462722_83462879	4.71393	CDX1,2,4.p2	AK153155|Ccl3|20302|chemokine (C-C motif) ligand 3	EU366956|Ccl3|20302|chemokine (C-C motif) ligand 3	BC111443|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065939|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065940|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065941|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065942|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065943|Ccl3|20302|chemokine (C-C motif) ligand 3	J04491|Ccl3|20302|chemokine (C-C motif) ligand 3	X12531|Ccl3|20302|chemokine (C-C motif) ligand 3	M23447|Ccl3|20302|chemokine (C-C motif) ligand 3	AK150590|Ccl3|20302|chemokine (C-C motif) ligand 3	AK150634|Ccl3|20302|chemokine (C-C motif) ligand 3	AK150698|Ccl3|20302|chemokine (C-C motif) ligand 3	AK151581|Ccl3|20302|chemokine (C-C motif) ligand 3	AK152648|Ccl3|20302|chemokine (C-C motif) ligand 3	AK155058|Ccl3|20302|chemokine (C-C motif) ligand 3	NM_011337|Ccl3|20302|chemokine (C-C motif) ligand 3
mm9_v1_chr2_-_27118325_27118417	4.69572	CDX1,2,4.p2	AK012893|Vav2|22325|vav 2 oncogene	BC025845|Vav2|22325|vav 2 oncogene
mm9_v1_chr7_-_23477335_23477335	4.67668	CDX1,2,4.p2	NM_001167154|Gm8693|667543|predicted gene 8693	NM_001167155|Gm4144|100042980|predicted gene 4144
mm9_v1_chr12_-_115170216_115170645	4.65382	CDX1,2,4.p2	BC092269|Ighg|380794|Immunoglobulin heavy chain (gamma polypeptide)
mm9_v1_chr9_-_14185685_14185685	4.62444	CDX1,2,4.p2	AK173036|Endod1|71946|endonuclease domain containing 1	NM_028013|Endod1|71946|endonuclease domain containing 1
mm9_v1_chr8_+_119983664_119983684	4.62371	CDX1,2,4.p2	
mm9_v1_chr1_+_173612173_173612224	4.57486	CDX1,2,4.p2	X17501|Cd48|12506|CD48 antigen	X53526|Cd48|12506|CD48 antigen	AK007741|Cd48|12506|CD48 antigen	NM_007649|Cd48|12506|CD48 antigen	AK151601|Cd48|12506|CD48 antigen	AB196820|Cd48|12506|CD48 antigen	AB196821|Cd48|12506|CD48 antigen	AB196822|Cd48|12506|CD48 antigen	AB196823|Cd48|12506|CD48 antigen
mm9_v1_chr12_-_27129497_27129520	4.54332	CDX1,2,4.p2	AK151624|Rsad2|58185|radical S-adenosyl methionine domain containing 2	AK203254|Rsad2|58185|radical S-adenosyl methionine domain containing 2
mm9_v1_chr13_-_67500685_67500702	4.53643	CDX1,2,4.p2	AK083314|Zfp429|72807|zinc finger protein 429	BC046484|Zfp429|72807|zinc finger protein 429	NM_001080941|Zfp429|72807|zinc finger protein 429
mm9_v1_chr19_+_36453556_36453595	4.5106	CDX1,2,4.p2	AK017984|Pcgf5|76073|polycomb group ring finger 5	NM_029508|Pcgf5|76073|polycomb group ring finger 5	BC139258|Pcgf5|76073|polycomb group ring finger 5	BC139259|Pcgf5|76073|polycomb group ring finger 5	BC145590|Pcgf5|76073|polycomb group ring finger 5	BC145591|Pcgf5|76073|polycomb group ring finger 5
mm9_v1_chr7_-_22813915_22813915	4.49992	CDX1,2,4.p2	NM_001166746|Vmn1r111|667292|vomeronasal 1 receptor 111	NM_001166839|Gm4172|100043016|predicted gene 4172	NM_001167168|Gm4220|100043088|predicted gene 4220	NM_001167169|Gm4179|100043029|predicted gene 4179
mm9_v1_chr9_+_7272513_7272544	4.45953	CDX1,2,4.p2	BC125320|Mmp13|17386|matrix metallopeptidase 13	BC125322|Mmp13|17386|matrix metallopeptidase 13	NM_008607|Mmp13|17386|matrix metallopeptidase 13	AK150728|Mmp13|17386|matrix metallopeptidase 13	AK151626|Mmp13|17386|matrix metallopeptidase 13	AK152916|Mmp13|17386|matrix metallopeptidase 13	AK153458|Mmp13|17386|matrix metallopeptidase 13	AK155188|Mmp13|17386|matrix metallopeptidase 13	AK152507|Mmp13|17386|matrix metallopeptidase 13	AK159921|Mmp13|17386|matrix metallopeptidase 13	AK160819|Mmp13|17386|matrix metallopeptidase 13	X66473|Mmp13|17386|matrix metallopeptidase 13
mm9_v1_chr13_+_24706474_24706497	4.43621	CDX1,2,4.p2	AK041665|Fam65b|193385|family with sequence similarity 65, member B	NM_178658|Fam65b|193385|family with sequence similarity 65, member B	AK036452|Fam65b|193385|family with sequence similarity 65, member B	AK040887|Fam65b|193385|family with sequence similarity 65, member B
mm9_v1_chr14_-_103379725_103379759	4.37652	CDX1,2,4.p2	AK086988|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK032276|Kctd12|239217|potassium channel tetramerisation domain containing 12
mm9_v1_chr11_+_60955985_60956002	4.36474	CDX1,2,4.p2	AK155178|Tnfrsf13b|57916|tumor necrosis factor receptor superfamily, member 13b
mm9_v1_chr3_-_112959644_112959644	4.34622	CDX1,2,4.p2	NM_001190403|Amy2b|545562|amylase 2b	NM_001190404|Amy2b|545562|amylase 2b
mm9_v1_chr11_-_34647110_34647142	4.31981	CDX1,2,4.p2	AK011138|Ccdc99|70385|coiled-coil domain containing 99	BC006674|Ccdc99|70385|coiled-coil domain containing 99	AK012927|Ccdc99|70385|coiled-coil domain containing 99	NM_027411|Ccdc99|70385|coiled-coil domain containing 99
mm9_v1_chr4_+_135728188_135728308	4.31114	CDX1,2,4.p2	AK087452|E2f2|242705|E2F transcription factor 2	NM_177733|E2f2|242705|E2F transcription factor 2
mm9_v1_chr7_+_29225955_29226034	4.30703	CDX1,2,4.p2	AK009967|Gmfg|63986|glia maturation factor, gamma	NM_001039192|Gmfg|63986|glia maturation factor, gamma	AB003588|Gmfg|63986|glia maturation factor, gamma
mm9_v1_chr10_+_79457716_79457753	4.27698	CDX1,2,4.p2	AK209768|Cnn2|12798|calponin 2	AK210808|Cnn2|12798|calponin 2	AK208961|Cnn2|12798|calponin 2	AK209669|Cnn2|12798|calponin 2	AK218447|Cnn2|12798|calponin 2	AK219047|Cnn2|12798|calponin 2
mm9_v1_chr2_+_24242134_24242148	4.27243	CDX1,2,4.p2	AK150238|Psd4|215632|pleckstrin and Sec7 domain containing 4	AK155249|Psd4|215632|pleckstrin and Sec7 domain containing 4	AK169859|Psd4|215632|pleckstrin and Sec7 domain containing 4
mm9_v1_chr10_+_79348991_79349057	4.26605	CDX1,2,4.p2	BC145800|Elane|50701|elastase, neutrophil expressed	AK143710|Elane|50701|elastase, neutrophil expressed	NM_015779|Elane|50701|elastase, neutrophil expressed
mm9_v1_chr1_-_173582969_173583167	4.24026	CDX1,2,4.p2	AK016183|Slamf7|75345|SLAM family member 7	AK030135|Slamf7|75345|SLAM family member 7	AK030148|Slamf7|75345|SLAM family member 7	NM_144539|Slamf7|75345|SLAM family member 7
mm9_v1_chr12_-_80084464_80084464	4.20648	CDX1,2,4.p2	BC057677|Tmem229b|268567|transmembrane protein 229B	NM_001170401|Tmem229b|268567|transmembrane protein 229B
mm9_v1_chr14_-_20796255_20796277	4.20561	CDX1,2,4.p2	AK003588|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	AK036138|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2
mm9_v1_chr1_-_55044032_55044295	4.1968	CDX1,2,4.p2	AK077993|Sf3b1|81898|splicing factor 3b, subunit 1	AK087700|Sf3b1|81898|splicing factor 3b, subunit 1
mm9_v1_chr1_-_167638124_167638145	4.18329	CDX1,2,4.p2	BC025872|Rcsd1|226594|RCSD domain containing 1	AK171914|Rcsd1|226594|RCSD domain containing 1
mm9_v1_chr1_-_192994532_192994569	4.17218	CDX1,2,4.p2	AK217100|Atf3|11910|activating transcription factor 3
mm9_v1_chr1_+_109407998_109408121	4.13777	CDX1,2,4.p2	AK081487|Serpinb2|18788|serine (or cysteine) peptidase inhibitor, clade B, member 2	NM_001174170|Serpinb2|18788|serine (or cysteine) peptidase inhibitor, clade B, member 2	NM_011111|Serpinb2|18788|serine (or cysteine) peptidase inhibitor, clade B, member 2	AK090049|Serpinb2|18788|serine (or cysteine) peptidase inhibitor, clade B, member 2
mm9_v1_chr5_-_17341512_17341522	4.13499	CDX1,2,4.p2	AK052825|Cd36|12491|CD36 antigen
mm9_v1_chr1_-_53813191_53813277	4.12	CDX1,2,4.p2	
mm9_v1_chr11_-_115375672_115375704	4.10415	CDX1,2,4.p2	BC003758|Hn1|15374|hematological and neurological expressed sequence 1	NM_008258|Hn1|15374|hematological and neurological expressed sequence 1	U90123|Hn1|15374|hematological and neurological expressed sequence 1	AK167961|Hn1|15374|hematological and neurological expressed sequence 1	AK013122|Hn1|15374|hematological and neurological expressed sequence 1	AK004909|Hn1|15374|hematological and neurological expressed sequence 1	AK010057|Hn1|15374|hematological and neurological expressed sequence 1	AK159784|Hn1|15374|hematological and neurological expressed sequence 1	AK167466|Hn1|15374|hematological and neurological expressed sequence 1	AK168632|Hn1|15374|hematological and neurological expressed sequence 1	AK014212|Hn1|15374|hematological and neurological expressed sequence 1	AK152560|Hn1|15374|hematological and neurological expressed sequence 1	AK150410|Hn1|15374|hematological and neurological expressed sequence 1
mm9_v1_chr7_-_3820753_3820811	4.08508	CDX1,2,4.p2	AK137448|Gm10693|675749|predicted pseudogene 10693
mm9_v1_chr3_-_113094211_113094366	4.06864	CDX1,2,4.p2	BC100579|Amy2a5|109959|amylase 2a5	BC094924|Amy2a5|109959|amylase 2a5	AK078968|Amy2a5|109959|amylase 2a5	X02576|Amy2a5|109959|amylase 2a5	V00718|Amy2a5|109959|amylase 2a5	X02577|Amy2a5|109959|amylase 2a5	X02578|Amy2a5|109959|amylase 2a5	X02579|Amy2a5|109959|amylase 2a5	AK133526|Amy2a5|109959|amylase 2a5	NM_001042711|Amy2a5|109959|amylase 2a5	NM_001160150|Amy2a4|100043684|amylase 2a4	NM_001160151|Amy2a3|100043686|amylase 2a3	NM_001160152|Amy2a2|100043688|amylase 2a2
mm9_v1_chr5_+_34868420_34868522	4.05373	CDX1,2,4.p2	AK155898|Sh3bp2|24055|SH3-domain binding protein 2	NM_011893|Sh3bp2|24055|SH3-domain binding protein 2	AK155103|Sh3bp2|24055|SH3-domain binding protein 2	BC010198|Sh3bp2|24055|SH3-domain binding protein 2	L14543|Sh3bp2|24055|SH3-domain binding protein 2	AK089455|Sh3bp2|24055|SH3-domain binding protein 2
mm9_v1_chr17_+_34375847_34375923	4.05213	CDX1,2,4.p2	AK172191|H2-Ob|15002|histocompatibility 2, O region beta locus	AK155650|H2-Ob|15002|histocompatibility 2, O region beta locus	NM_010389|H2-Ob|15002|histocompatibility 2, O region beta locus	AK172273|H2-Ob|15002|histocompatibility 2, O region beta locus	AK172299|H2-Ob|15002|histocompatibility 2, O region beta locus	AK155144|H2-Ob|15002|histocompatibility 2, O region beta locus	BC127027|H2-Ob|15002|histocompatibility 2, O region beta locus	BC127028|H2-Ob|15002|histocompatibility 2, O region beta locus	BC100707|H2-Ob|15002|histocompatibility 2, O region beta locus	BC100710|H2-Ob|15002|histocompatibility 2, O region beta locus	BC100709|H2-Ob|15002|histocompatibility 2, O region beta locus
mm9_v1_chr9_+_124016886_124016921	4.04586	CDX1,2,4.p2	AK154590|Ccr2|12772|chemokine (C-C motif) receptor 2	NM_009915|Ccr2|12772|chemokine (C-C motif) receptor 2	U56819|Ccr2|12772|chemokine (C-C motif) receptor 2
mm9_v1_chr6_-_129422702_129422806	4.02477	CDX1,2,4.p2	AY534909|Clec7a|56644|C-type lectin domain family 7, member a	BC027742|Clec7a|56644|C-type lectin domain family 7, member a	AF262985|Clec7a|56644|C-type lectin domain family 7, member a	NM_020008|Clec7a|56644|C-type lectin domain family 7, member a
mm9_v1_chr3_-_113126814_113126969	4.02193	CDX1,2,4.p2	BC100579|Amy2a5|109959|amylase 2a5	BC094924|Amy2a5|109959|amylase 2a5	AK078968|Amy2a5|109959|amylase 2a5	X02576|Amy2a5|109959|amylase 2a5	V00718|Amy2a5|109959|amylase 2a5	X02577|Amy2a5|109959|amylase 2a5	X02578|Amy2a5|109959|amylase 2a5	X02579|Amy2a5|109959|amylase 2a5	AK133526|Amy2a5|109959|amylase 2a5	NM_001042711|Amy2a5|109959|amylase 2a5	NM_001160150|Amy2a4|100043684|amylase 2a4	NM_001160151|Amy2a3|100043686|amylase 2a3	NM_001160152|Amy2a2|100043688|amylase 2a2
mm9_v1_chr5_-_17394564_17394590	4.02128	CDX1,2,4.p2	AK128908|Cd36|12491|CD36 antigen
mm9_v1_chr10_+_57351786_57351901	3.99622	CDX1,2,4.p2	L02241|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039051|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_008863|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK005281|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK089677|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK083875|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK156851|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK157521|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK171359|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK156950|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific
mm9_v1_chr11_-_98862163_98862321	3.99078	CDX1,2,4.p2	AK138079|Top2a|21973|topoisomerase (DNA) II alpha	BC094326|Top2a|21973|topoisomerase (DNA) II alpha
mm9_v1_chr3_+_145813137_145813208	3.99046	CDX1,2,4.p2	NM_001005846|Mcoln2|68279|mucolipin 2	AK014467|Mcoln2|68279|mucolipin 2
mm9_v1_chr17_+_48594225_48594270	3.97378	CDX1,2,4.p2	AK144925|Unc5cl|76589|unc-5 homolog C (C. elegans)-like	NM_152823|Unc5cl|76589|unc-5 homolog C (C. elegans)-like	BC095959|Unc5cl|76589|unc-5 homolog C (C. elegans)-like
mm9_v1_chr7_-_21488234_21488234	3.95976	CDX1,2,4.p2	NM_001166746|Vmn1r111|667292|vomeronasal 1 receptor 111	NM_001166839|Gm4172|100043016|predicted gene 4172	NM_001167168|Gm4220|100043088|predicted gene 4220	NM_001167169|Gm4179|100043029|predicted gene 4179
mm9_v1_chr7_-_24036700_24036700	3.95976	CDX1,2,4.p2	NM_001166746|Vmn1r111|667292|vomeronasal 1 receptor 111	NM_001166839|Gm4172|100043016|predicted gene 4172	NM_001167168|Gm4220|100043088|predicted gene 4220	NM_001167169|Gm4179|100043029|predicted gene 4179
mm9_v1_chr1_+_60803231_60803317	3.93824	CDX1,2,4.p2	NM_007642|Cd28|12487|CD28 antigen	AK041322|Cd28|12487|CD28 antigen	M34563|Cd28|12487|CD28 antigen	AK088021|Cd28|12487|CD28 antigen	AK030812|Cd28|12487|CD28 antigen	BC064058|Cd28|12487|CD28 antigen
mm9_v1_chr7_-_3796651_3796654	3.92311	CDX1,2,4.p2	AK140776|Pira2|18725|paired-Ig-like receptor A2	AK137475|Pira2|18725|paired-Ig-like receptor A2	AK172046|Pira2|18725|paired-Ig-like receptor A2	NM_011089|Pira2|18725|paired-Ig-like receptor A2
mm9_v1_chr5_-_105411580_105411736	3.92006	CDX1,2,4.p2	BC029095|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AK037614|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AF324242|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AK051880|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AK156626|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	BC138773|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	BC138772|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	NM_030239|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AK030831|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3
mm9_v1_chr14_-_20796411_20796481	3.89611	CDX1,2,4.p2	AK158697|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	NM_001038637|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	NM_010315|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2
mm9_v1_chr4_+_44313764_44313857	3.88527	CDX1,2,4.p2	AK137000|Melk|17279|maternal embryonic leucine zipper kinase	AK161029|Melk|17279|maternal embryonic leucine zipper kinase	AK011932|Melk|17279|maternal embryonic leucine zipper kinase	NM_010790|Melk|17279|maternal embryonic leucine zipper kinase	AK010498|Melk|17279|maternal embryonic leucine zipper kinase	AK164138|Melk|17279|maternal embryonic leucine zipper kinase	BC055065|Melk|17279|maternal embryonic leucine zipper kinase	AK129076|Melk|17279|maternal embryonic leucine zipper kinase	X95351|Melk|17279|maternal embryonic leucine zipper kinase	AK145021|Melk|17279|maternal embryonic leucine zipper kinase	L76158|Melk|17279|maternal embryonic leucine zipper kinase
mm9_v1_chr8_+_34763709_34763709	3.87095	CDX1,2,4.p2	BC056357|Gsr|14782|glutathione reductase	BC057325|Gsr|14782|glutathione reductase	NM_010344|Gsr|14782|glutathione reductase
mm9_v1_chr10_+_66648458_66648510	3.86689	CDX1,2,4.p2	AK087621|Jmjd1c|108829|jumonji domain containing 1C	AK170460|Jmjd1c|108829|jumonji domain containing 1C	AK135461|Jmjd1c|108829|jumonji domain containing 1C	AK085500|Jmjd1c|108829|jumonji domain containing 1C	AK133016|Jmjd1c|108829|jumonji domain containing 1C
mm9_v1_chr4_+_44313865_44313931	3.8537	CDX1,2,4.p2	AK167457|Melk|17279|maternal embryonic leucine zipper kinase	AK145316|Melk|17279|maternal embryonic leucine zipper kinase	AK208560|Melk|17279|maternal embryonic leucine zipper kinase
mm9_v1_chr3_+_145784635_145784876	3.84984	CDX1,2,4.p2	AK030819|Mcoln3|171166|mucolipin 3	AK035029|Mcoln3|171166|mucolipin 3	AK033008|Mcoln3|171166|mucolipin 3	AF475086|Mcoln3|171166|mucolipin 3	BC106856|Mcoln3|171166|mucolipin 3	BC106857|Mcoln3|171166|mucolipin 3	NM_134160|Mcoln3|171166|mucolipin 3	AY083531|Mcoln3|171166|mucolipin 3	AK191060|Mcoln3|171166|mucolipin 3	AK202150|Mcoln3|171166|mucolipin 3
mm9_v1_chr8_+_74121544_74121680	3.84919	CDX1,2,4.p2	NM_001166213|Fam129c|100037278|family with sequence similarity 129, member C	AK158308|Fam129c|100037278|family with sequence similarity 129, member C
mm9_v1_chr7_+_29222465_29222512	3.82699	CDX1,2,4.p2	AK002834|Gmfg|63986|glia maturation factor, gamma	AK014214|Gmfg|63986|glia maturation factor, gamma	NM_022024|Gmfg|63986|glia maturation factor, gamma	AF297221|Gmfg|63986|glia maturation factor, gamma	BC011488|Gmfg|63986|glia maturation factor, gamma
mm9_v1_chr1_-_64167818_64167853	3.82498	CDX1,2,4.p2	AF327568|Klf7|93691|Kruppel-like factor 7 (ubiquitous)
mm9_v1_chr11_-_83391984_83392037	3.81905	CDX1,2,4.p2	AF128195|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128196|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128197|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128198|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128199|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128200|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128201|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128202|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128203|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128204|Ccl9|20308|chemokine (C-C motif) ligand 9	BC139318|Ccl9|20308|chemokine (C-C motif) ligand 9	BC145962|Ccl9|20308|chemokine (C-C motif) ligand 9	U49513|Ccl9|20308|chemokine (C-C motif) ligand 9	AK151131|Ccl9|20308|chemokine (C-C motif) ligand 9	AK155036|Ccl9|20308|chemokine (C-C motif) ligand 9	AK154511|Ccl9|20308|chemokine (C-C motif) ligand 9	AK154657|Ccl9|20308|chemokine (C-C motif) ligand 9	AK155032|Ccl9|20308|chemokine (C-C motif) ligand 9	AK151649|Ccl9|20308|chemokine (C-C motif) ligand 9
mm9_v1_chr10_-_61970481_61970509	3.81684	CDX1,2,4.p2	BC037076|Srgn|19073|serglycin	J04549|Srgn|19073|serglycin	AK157945|Srgn|19073|serglycin	M34603|Srgn|19073|serglycin	NM_011157|Srgn|19073|serglycin	X16133|Srgn|19073|serglycin	AK168124|Srgn|19073|serglycin	AK151357|Srgn|19073|serglycin
mm9_v1_chr17_-_32557807_32557904	3.80395	CDX1,2,4.p2	EF204951|Pglyrp2|57757|peptidoglycan recognition protein 2	AY282722|Pglyrp2|57757|peptidoglycan recognition protein 2	BC019396|Pglyrp2|57757|peptidoglycan recognition protein 2
mm9_v1_chr3_+_95465860_95465866	3.78992	CDX1,2,4.p2	AK160634|Mcl1|17210|myeloid cell leukemia sequence 1
mm9_v1_chr7_+_28954717_28954778	3.78893	CDX1,2,4.p2	BC092274|Fbl|14113|fibrillarin	BC003813|Fbl|14113|fibrillarin	NM_007991|Fbl|14113|fibrillarin	AK012620|Fbl|14113|fibrillarin	AK146328|Fbl|14113|fibrillarin	Z22593|Fbl|14113|fibrillarin
mm9_v1_chr11_+_100442831_100442963	3.78668	CDX1,2,4.p2	AK217119|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr2_-_148263617_148263709	3.74327	CDX1,2,4.p2	AK161779|Cd93|17064|CD93 antigen	AK150385|Cd93|17064|CD93 antigen
mm9_v1_chr15_-_82074765_82074852	3.72779	CDX1,2,4.p2	NM_001080158|Cenpm|66570|centromere protein M
mm9_v1_chr7_+_22057197_22057197	3.71037	CDX1,2,4.p2	NM_001166740|Vmn1r125|667215|vomeronasal 1 receptor 125
mm9_v1_chr6_+_116123984_116124113	3.7057	CDX1,2,4.p2	AK210116|Gm8203|666634|predicted pseudogene 8203
mm9_v1_chr5_+_34014563_34014669	3.68159	CDX1,2,4.p2	
mm9_v1_chr16_+_36184297_36184316	3.6648	CDX1,2,4.p2	AK089257|Gm5483|433016|predicted gene 5483	NM_001082547|Gm5483|433016|predicted gene 5483	BC147081|Gm5483|433016|predicted gene 5483	BC147082|Gm5483|433016|predicted gene 5483
mm9_v1_chr9_-_123771243_123771245	3.64677	CDX1,2,4.p2	AK089908|Xcr1|23832|chemokine (C motif) receptor 1	AK040878|Xcr1|23832|chemokine (C motif) receptor 1	NM_011798|Xcr1|23832|chemokine (C motif) receptor 1
mm9_v1_chr8_+_72332573_72332679	3.63093	CDX1,2,4.p2	AK043883|Gmip|78816|Gem-interacting protein	BC057037|Gmip|78816|Gem-interacting protein	NM_198101|Gmip|78816|Gem-interacting protein	AK082337|Gmip|78816|Gem-interacting protein	AK172438|Gmip|78816|Gem-interacting protein	BC060628|Gmip|78816|Gem-interacting protein	AK137177|Gmip|78816|Gem-interacting protein	AK052221|Gmip|78816|Gem-interacting protein
mm9_v1_chr7_+_23656242_23656242	3.62276	CDX1,2,4.p2	NM_001166724|Vmn1r160|620758|vomeronasal 1 receptor 160
mm9_v1_chr6_+_83065466_83065564	3.62039	CDX1,2,4.p2	AK144946|Mogs|57377|mannosyl-oligosaccharide glucosidase	BC051949|Mogs|57377|mannosyl-oligosaccharide glucosidase	NM_020619|Mogs|57377|mannosyl-oligosaccharide glucosidase	AK157286|Mogs|57377|mannosyl-oligosaccharide glucosidase
mm9_v1_chr14_-_20796199_20796254	3.61017	CDX1,2,4.p2	AK075698|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	AK160396|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	AK012405|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2
mm9_v1_chr13_-_101086551_101086570	3.60809	CDX1,2,4.p2	BC116347|Naip6|17952|NLR family, apoptosis inhibitory protein 6	BC141346|Naip6|17952|NLR family, apoptosis inhibitory protein 6	AF381772|Naip6|17952|NLR family, apoptosis inhibitory protein 6	NM_010871|Naip6|17952|NLR family, apoptosis inhibitory protein 6
mm9_v1_chr4_-_46417054_46417104	3.60498	CDX1,2,4.p2	AF269248|Hemgn|93966|hemogen	NM_053149|Hemgn|93966|hemogen	AK171906|Hemgn|93966|hemogen
mm9_v1_chr5_+_114580397_114580568	3.60153	CDX1,2,4.p2	BC011039|Ung|22256|uracil DNA glycosylase	NM_001040691|Ung|22256|uracil DNA glycosylase	Y08975|Ung|22256|uracil DNA glycosylase	AK146178|Ung|22256|uracil DNA glycosylase
mm9_v1_chr5_+_150076605_150076688	3.58636	CDX1,2,4.p2	AK004002|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein	BC026209|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein	NM_009663|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein	AK075967|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein	M96554|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein
mm9_v1_chrX_+_83115611_83115703	3.5755	CDX1,2,4.p2	NM_001163539|5430427O19Rik|71398|RIKEN cDNA 5430427O19 gene	AK155591|5430427O19Rik|71398|RIKEN cDNA 5430427O19 gene	AK154689|5430427O19Rik|71398|RIKEN cDNA 5430427O19 gene
mm9_v1_chr7_-_22331108_22331108	3.56901	CDX1,2,4.p2	NM_001166746|Vmn1r111|667292|vomeronasal 1 receptor 111	NM_001166839|Gm4172|100043016|predicted gene 4172	NM_001167168|Gm4220|100043088|predicted gene 4220	NM_001167169|Gm4179|100043029|predicted gene 4179
mm9_v1_chr3_-_113159420_113159575	3.55957	CDX1,2,4.p2	BC100579|Amy2a5|109959|amylase 2a5	BC094924|Amy2a5|109959|amylase 2a5	AK078968|Amy2a5|109959|amylase 2a5	X02576|Amy2a5|109959|amylase 2a5	V00718|Amy2a5|109959|amylase 2a5	X02577|Amy2a5|109959|amylase 2a5	X02578|Amy2a5|109959|amylase 2a5	X02579|Amy2a5|109959|amylase 2a5	AK133526|Amy2a5|109959|amylase 2a5	NM_001042711|Amy2a5|109959|amylase 2a5	NM_001160150|Amy2a4|100043684|amylase 2a4	NM_001160151|Amy2a3|100043686|amylase 2a3	NM_001160152|Amy2a2|100043688|amylase 2a2
mm9_v1_chr11_-_34647016_34647097	3.54437	CDX1,2,4.p2	AK139553|Ccdc99|70385|coiled-coil domain containing 99	AK163303|Ccdc99|70385|coiled-coil domain containing 99
mm9_v1_chr7_+_63185457_63185630	3.52087	CDX1,2,4.p2	AK195390|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK052509|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1
mm9_v1_chr8_+_85689250_85689250	3.51494	CDX1,2,4.p2	AK049049|Tbc1d9|71310|TBC1 domain family, member 9	NM_001111304|Tbc1d9|71310|TBC1 domain family, member 9	NM_027758|Tbc1d9|71310|TBC1 domain family, member 9
mm9_v1_chr14_-_122314994_122315068	3.50681	CDX1,2,4.p2	AK172401|Gpr18|110168|G protein-coupled receptor 18	BC034872|Gpr18|110168|G protein-coupled receptor 18	NM_182806|Gpr18|110168|G protein-coupled receptor 18	AK157029|Gpr18|110168|G protein-coupled receptor 18	AK156868|Gpr18|110168|G protein-coupled receptor 18	AK156039|Gpr18|110168|G protein-coupled receptor 18
mm9_v1_chr7_-_21697365_21697365	3.5003	CDX1,2,4.p2	NM_001166742|Vmn1r118|667259|vomeronasal 1 receptor 118	NM_001167150|Gm8453|667094|predicted gene 8453	NM_001167151|Gm4498|100043523|predicted gene 4498
mm9_v1_chr14_-_52780511_52780625	3.45164	CDX1,2,4.p2	AK082901|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)
mm9_v1_chr17_+_34282215_34282360	3.45033	CDX1,2,4.p2	BC052864|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	X62743|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	AK154923|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	BC141105|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	BC145385|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	BC145386|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	BC171960|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	NM_010388|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	U35332|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	U35334|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	U35335|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	U35336|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	U35337|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	U35338|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	X90796|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	X90797|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	X90798|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	X90799|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	X90800|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	X90801|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	X90802|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	X90803|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	X90804|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	X90805|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	X90806|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	X90807|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2	X90808|H2-DMb2|15000|histocompatibility 2, class II, locus Mb2
mm9_v1_chr9_-_82826139_82826181	3.43144	CDX1,2,4.p2	BC068022|Phip|83946|pleckstrin homology domain interacting protein
mm9_v1_chr7_-_23628623_23628623	3.42538	CDX1,2,4.p2	NM_001166758|Vmn1r159|670857|vomeronasal 1 receptor 159
mm9_v1_chr2_-_59963586_59963753	3.41143	CDX1,2,4.p2	BC150814|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK029386|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK134250|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK173180|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK030867|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B
mm9_v1_chrY_-_623013_623055	3.409	CDX1,2,4.p2	AK154382|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	AJ007376|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	BC051046|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	NM_012008|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
mm9_v1_chr7_-_20819176_20819176	3.38875	CDX1,2,4.p2	NM_001166742|Vmn1r118|667259|vomeronasal 1 receptor 118	NM_001167150|Gm8453|667094|predicted gene 8453	NM_001167151|Gm4498|100043523|predicted gene 4498
mm9_v1_chr8_+_119983566_119983649	3.37701	CDX1,2,4.p2	AK049761|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr7_+_97177668_97177676	3.37291	CDX1,2,4.p2	AK165252|E230029C05Rik|319711|RIKEN cDNA E230029C05 gene	AK157435|E230029C05Rik|319711|RIKEN cDNA E230029C05 gene	AK046045|E230029C05Rik|319711|RIKEN cDNA E230029C05 gene
mm9_v1_chr7_-_23014502_23014502	3.3523	CDX1,2,4.p2	NM_001166742|Vmn1r118|667259|vomeronasal 1 receptor 118	NM_001167150|Gm8453|667094|predicted gene 8453	NM_001167151|Gm4498|100043523|predicted gene 4498
mm9_v1_chrY_+_234230_234474	3.34535	CDX1,2,4.p2	AK047790|Kdm5d|20592|lysine (K)-specific demethylase 5D	NM_011419|Kdm5d|20592|lysine (K)-specific demethylase 5D	AK141096|Kdm5d|20592|lysine (K)-specific demethylase 5D	AK140971|Kdm5d|20592|lysine (K)-specific demethylase 5D	BC060077|Kdm5d|20592|lysine (K)-specific demethylase 5D	AF127244|Kdm5d|20592|lysine (K)-specific demethylase 5D	AB221607|Kdm5d|20592|lysine (K)-specific demethylase 5D	Z29652|Kdm5d|20592|lysine (K)-specific demethylase 5D
mm9_v1_chr8_-_122364230_122364443	3.34495	CDX1,2,4.p2	CT010261|Cotl1|72042|coactosin-like 1 (Dictyostelium)	BC011068|Cotl1|72042|coactosin-like 1 (Dictyostelium)	BC010249|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK150888|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK007994|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK008085|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK010052|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK039644|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK151690|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK157694|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK172403|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK148854|Cotl1|72042|coactosin-like 1 (Dictyostelium)
mm9_v1_chr16_+_44811858_44811936	3.32227	CDX1,2,4.p2	AK089262|Cd200r4|239849|CD200 receptor 4
mm9_v1_chr9_+_65738150_65738159	3.30072	CDX1,2,4.p2	AK012140|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene
mm9_v1_chr7_-_34977928_34978057	3.27078	CDX1,2,4.p2	BC025090|Pdcd2l|68079|programmed cell death 2-like	BC038524|Pdcd2l|68079|programmed cell death 2-like
mm9_v1_chr16_-_11137100_11137212	3.26517	CDX1,2,4.p2	AK218593|Zc3h7a|106205|zinc finger CCCH type containing 7 A
mm9_v1_chr2_-_163462584_163462669	3.24129	CDX1,2,4.p2	AK128955|Serinc3|26943|serine incorporator 3
mm9_v1_chr5_+_115373333_115373385	3.23823	CDX1,2,4.p2	AK089111|Oasl1|231655|2'-5' oligoadenylate synthetase-like 1
mm9_v1_chr5_-_100392845_100392900	3.22566	CDX1,2,4.p2	AK053251|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr4_+_140258090_140258179	3.21113	CDX1,2,4.p2	AK186216|Rcc2|108911|regulator of chromosome condensation 2	AK129370|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr1_-_99558490_99558623	3.1943	CDX1,2,4.p2	AK162223|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	AK135656|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	BC019375|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	BC023951|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	AK152370|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	AK168549|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	NM_133825|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed
mm9_v1_chr5_-_135391315_135391362	3.15697	CDX1,2,4.p2	BC115481|Cldn13|57255|claudin 13	BC115482|Cldn13|57255|claudin 13
mm9_v1_chr7_-_25917458_25917515	3.14436	CDX1,2,4.p2	AY746974|Pou2f2|18987|POU domain, class 2, transcription factor 2	BC104488|Pou2f2|18987|POU domain, class 2, transcription factor 2	BC105647|Pou2f2|18987|POU domain, class 2, transcription factor 2	BC105920|Pou2f2|18987|POU domain, class 2, transcription factor 2	BC105921|Pou2f2|18987|POU domain, class 2, transcription factor 2	NM_001163554|Pou2f2|18987|POU domain, class 2, transcription factor 2	NM_001163555|Pou2f2|18987|POU domain, class 2, transcription factor 2	NM_001163556|Pou2f2|18987|POU domain, class 2, transcription factor 2	NM_011138|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57936|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57937|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57938|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57939|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57940|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57941|Pou2f2|18987|POU domain, class 2, transcription factor 2	AK156322|Pou2f2|18987|POU domain, class 2, transcription factor 2	BC050258|Pou2f2|18987|POU domain, class 2, transcription factor 2	AY746973|Pou2f2|18987|POU domain, class 2, transcription factor 2
mm9_v1_chr2_-_169956719_169956719	3.1321	CDX1,2,4.p2	AK156475|Zfp217|228913|zinc finger protein 217	NM_001033299|Zfp217|228913|zinc finger protein 217
mm9_v1_chr14_+_48092235_48092236	3.10804	CDX1,2,4.p2	AK020018|Fbxo34|78938|F-box protein 34	NM_001146085|Fbxo34|78938|F-box protein 34	NM_001146086|Fbxo34|78938|F-box protein 34	NM_030236|Fbxo34|78938|F-box protein 34
mm9_v1_chr11_-_83392109_83392117	3.10146	CDX1,2,4.p2	U15209|Ccl9|20308|chemokine (C-C motif) ligand 9
mm9_v1_chr19_+_11543816_11544022	3.10016	CDX1,2,4.p2	NM_001166376|Ms4a6c|73656|membrane-spanning 4-domains, subfamily A, member 6C	NM_028595|Ms4a6c|73656|membrane-spanning 4-domains, subfamily A, member 6C	AK008652|Ms4a6c|73656|membrane-spanning 4-domains, subfamily A, member 6C	AF237910|Ms4a6c|73656|membrane-spanning 4-domains, subfamily A, member 6C	BC062247|Ms4a6c|73656|membrane-spanning 4-domains, subfamily A, member 6C	AK075852|Ms4a6c|73656|membrane-spanning 4-domains, subfamily A, member 6C	AK150397|Ms4a6c|73656|membrane-spanning 4-domains, subfamily A, member 6C	AK152258|Ms4a6c|73656|membrane-spanning 4-domains, subfamily A, member 6C
mm9_v1_chr15_-_103085703_103085858	3.08929	CDX1,2,4.p2	BC062171|Nfe2|18022|nuclear factor, erythroid derived 2	NM_008685|Nfe2|18022|nuclear factor, erythroid derived 2	L09600|Nfe2|18022|nuclear factor, erythroid derived 2
mm9_v1_chr2_-_59963796_59963833	3.08632	CDX1,2,4.p2	NM_001001182|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK147737|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B
mm9_v1_chr7_-_20960758_20960758	3.0835	CDX1,2,4.p2	NM_001166713|Gm5728|435949|predicted gene 5728	NM_001166751|Gm8660|667485|predicted gene 8660
mm9_v1_chr4_-_46416895_46416973	3.08347	CDX1,2,4.p2	AK077692|Hemgn|93966|hemogen	AY699986|Hemgn|93966|hemogen	AK156536|Hemgn|93966|hemogen	AK171890|Hemgn|93966|hemogen	AK172421|Hemgn|93966|hemogen
mm9_v1_chr7_-_21919146_21919146	3.07951	CDX1,2,4.p2	NM_001166714|Vmn1r122|435951|vomeronasal 1 receptor 122
mm9_v1_chr4_-_149075697_149075737	3.07693	CDX1,2,4.p2	AK040867|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK153304|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK155835|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK169494|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001029837|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm9_v1_chr9_+_65738168_65738258	3.07573	CDX1,2,4.p2	AK011645|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene	AK017673|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene	AK011835|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene	AK013105|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene	BC021413|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene	BC096393|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene	AY496943|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene
mm9_v1_chr2_+_84649645_84649692	3.06779	CDX1,2,4.p2	AK206200|Ube2l6|56791|ubiquitin-conjugating enzyme E2L 6
mm9_v1_chr7_-_3867085_3867115	3.03773	CDX1,2,4.p2	BC119598|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	NM_011087|Pira1|18722|paired-Ig-like receptor A1	U96682|Pira1|18722|paired-Ig-like receptor A1	BC127613|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	BC128500|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	U96684|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	AK152898|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	NM_011090|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	AK030846|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	AK054162|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6
mm9_v1_chr19_-_11679293_11679315	3.03154	CDX1,2,4.p2	NM_026835|Ms4a6d|68774|membrane-spanning 4-domains, subfamily A, member 6D
mm9_v1_chr7_+_25689409_25689425	3.02335	CDX1,2,4.p2	BC012488|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr2_+_69588414_69588564	3.01693	CDX1,2,4.p2	AK079931|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	AK045812|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chr1_-_80661844_80661858	3.00716	CDX1,2,4.p2	BC150753|Dock10|210293|dedicator of cytokinesis 10
mm9_v1_chr6_+_139789965_139790178	2.98892	CDX1,2,4.p2	AB008792|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	NM_011084|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	AK054415|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	AK054271|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	AK054266|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	BC061142|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide
mm9_v1_chr11_-_26493919_26493922	2.98853	CDX1,2,4.p2	NM_027260|Vrk2|69922|vaccinia related kinase 2	AK089825|Vrk2|69922|vaccinia related kinase 2
mm9_v1_chr7_+_73205419_73205451	2.98098	CDX1,2,4.p2	AK005256|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	AK151800|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	AK153502|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	AK152546|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	AK088438|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'
mm9_v1_chr14_-_56704033_56704109	2.97666	CDX1,2,4.p2	NM_008572|Mcpt8|17231|mast cell protease 8	X78545|Mcpt8|17231|mast cell protease 8	AK136485|Mcpt8|17231|mast cell protease 8	BC120607|Mcpt8|17231|mast cell protease 8	BC119342|Mcpt8|17231|mast cell protease 8	BC144934|Mcpt8|17231|mast cell protease 8
mm9_v1_chr5_-_5265981_5266073	2.96917	CDX1,2,4.p2	AK083269|Cdk14|18647|cyclin-dependent kinase 14	AK139386|Cdk14|18647|cyclin-dependent kinase 14	BC068134|Cdk14|18647|cyclin-dependent kinase 14	AK138437|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr6_-_130015247_130015411	2.96028	CDX1,2,4.p2	AY860975|Klra4|16635|killer cell lectin-like receptor, subfamily A, member 4	AY860973|Klra33|654450|killer cell lectin-like receptor subfamily A member 33	L78247|Klra4|16635|killer cell lectin-like receptor, subfamily A, member 4	NM_001039118|Klra33|654450|killer cell lectin-like receptor subfamily A member 33	AY971805|Klra18|93970|killer cell lectin-like receptor, subfamily A, member 18	AK145141|Klra4|16635|killer cell lectin-like receptor, subfamily A, member 4	AF218078|Klra4|16635|killer cell lectin-like receptor, subfamily A, member 4	AF218079|Klra4|16635|killer cell lectin-like receptor, subfamily A, member 4	BC141242|Klra18|93970|killer cell lectin-like receptor, subfamily A, member 18
mm9_v1_chr1_+_133534852_133534935	2.95417	CDX1,2,4.p2	AK083315|Ctse|13034|cathepsin E	AK040175|Ctse|13034|cathepsin E	BC005432|Ctse|13034|cathepsin E	NM_007799|Ctse|13034|cathepsin E
mm9_v1_chr1_-_154725297_154725297	2.93854	CDX1,2,4.p2	AK129101|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_001160257|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr7_-_21838802_21838802	2.93537	CDX1,2,4.p2	NM_001166715|Vmn1r120|435953|vomeronasal 1 receptor 120
mm9_v1_chr7_+_22617369_22617369	2.93235	CDX1,2,4.p2	NM_001166747|Vmn1r135|667404|vomeronasal 1 receptor 135	NM_001166755|Vmn1r163|667586|vomeronasal 1 receptor 163
mm9_v1_chr2_+_90517371_90517371	2.91323	CDX1,2,4.p2	AF104415|Nup160|59015|nucleoporin 160	NM_021512|Nup160|59015|nucleoporin 160
mm9_v1_chr14_+_80400057_80400108	2.88247	CDX1,2,4.p2	BC141127|Olfm4|380924|olfactomedin 4	BC145436|Olfm4|380924|olfactomedin 4	AK133536|Olfm4|380924|olfactomedin 4	NM_001030294|Olfm4|380924|olfactomedin 4
mm9_v1_chr8_+_34887177_34887229	2.86435	CDX1,2,4.p2	AK178391|Gtf2e2|68153|general transcription factor II E, polypeptide 2 (beta subunit)
mm9_v1_chr13_-_32943036_32943057	2.86119	CDX1,2,4.p2	AF426024|Serpinb1a|66222|serine (or cysteine) peptidase inhibitor, clade B, member 1a	AK003930|Serpinb1a|66222|serine (or cysteine) peptidase inhibitor, clade B, member 1a	AK008914|Serpinb1a|66222|serine (or cysteine) peptidase inhibitor, clade B, member 1a	AK076129|Serpinb1a|66222|serine (or cysteine) peptidase inhibitor, clade B, member 1a	AK160167|Serpinb1a|66222|serine (or cysteine) peptidase inhibitor, clade B, member 1a	AK004500|Serpinb1a|66222|serine (or cysteine) peptidase inhibitor, clade B, member 1a	NM_025429|Serpinb1a|66222|serine (or cysteine) peptidase inhibitor, clade B, member 1a
mm9_v1_chr9_-_96378951_96379045	2.8578	CDX1,2,4.p2	AK007588|Rnf7|19823|ring finger protein 7	BC011127|Rnf7|19823|ring finger protein 7	AK002628|Rnf7|19823|ring finger protein 7	AK003248|Rnf7|19823|ring finger protein 7	AK003963|Rnf7|19823|ring finger protein 7	AK011328|Rnf7|19823|ring finger protein 7	AK146030|Rnf7|19823|ring finger protein 7	NM_011279|Rnf7|19823|ring finger protein 7	AF092877|Rnf7|19823|ring finger protein 7
mm9_v1_chr10_-_36855292_36855411	2.8431	CDX1,2,4.p2	AK082623|Marcks|17118|myristoylated alanine rich protein kinase C substrate	AK136452|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr3_+_87161790_87161896	2.83989	CDX1,2,4.p2	AK159181|Cd5l|11801|CD5 antigen-like	NM_009690|Cd5l|11801|CD5 antigen-like	AK159823|Cd5l|11801|CD5 antigen-like	BC094459|Cd5l|11801|CD5 antigen-like	AK159132|Cd5l|11801|CD5 antigen-like	BC006799|Cd5l|11801|CD5 antigen-like	AF018268|Cd5l|11801|CD5 antigen-like	AF018269|Cd5l|11801|CD5 antigen-like	AF011428|Cd5l|11801|CD5 antigen-like
mm9_v1_chr14_-_31423487_31423497	2.8227	CDX1,2,4.p2	AB011812|Prkcd|18753|protein kinase C, delta	AF251036|Prkcd|18753|protein kinase C, delta	AY545076|Prkcd|18753|protein kinase C, delta	NM_011103|Prkcd|18753|protein kinase C, delta	X60304|Prkcd|18753|protein kinase C, delta
mm9_v1_chr13_-_101017247_101017293	2.81907	CDX1,2,4.p2	AF135493|Naip5|17951|NLR family, apoptosis inhibitory protein 5	AF135492|Naip5|17951|NLR family, apoptosis inhibitory protein 5	AF381771|Naip5|17951|NLR family, apoptosis inhibitory protein 5	NM_010870|Naip5|17951|NLR family, apoptosis inhibitory protein 5	AK154408|Naip5|17951|NLR family, apoptosis inhibitory protein 5
mm9_v1_chr2_+_32583221_32583245	2.8137	CDX1,2,4.p2	AK042709|Sh2d3c|27387|SH2 domain containing 3C	AK085885|Sh2d3c|27387|SH2 domain containing 3C	AK135231|Sh2d3c|27387|SH2 domain containing 3C	AB030442|Sh2d3c|27387|SH2 domain containing 3C
mm9_v1_chr16_-_36666078_36666195	2.80898	CDX1,2,4.p2	AF065897|Cd86|12524|CD86 antigen	AF065898|Cd86|12524|CD86 antigen	AF065899|Cd86|12524|CD86 antigen	AF065900|Cd86|12524|CD86 antigen	S70108|Cd86|12524|CD86 antigen	BC013807|Cd86|12524|CD86 antigen	L25606|Cd86|12524|CD86 antigen	AK079513|Cd86|12524|CD86 antigen	AK155710|Cd86|12524|CD86 antigen	AK170054|Cd86|12524|CD86 antigen	NM_019388|Cd86|12524|CD86 antigen	AK172548|Cd86|12524|CD86 antigen	AK172686|Cd86|12524|CD86 antigen
mm9_v1_chr7_+_25689359_25689364	2.80229	CDX1,2,4.p2	NM_001130152|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr4_+_140257340_140257464	2.80017	CDX1,2,4.p2	NM_173867|Rcc2|108911|regulator of chromosome condensation 2	BC060624|Rcc2|108911|regulator of chromosome condensation 2	AK076040|Rcc2|108911|regulator of chromosome condensation 2	BC086666|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr13_+_20277293_20277293	2.79848	CDX1,2,4.p2	AF398883|Elmo1|140580|engulfment and cell motility 1, ced-12 homolog (C. elegans)	NM_080288|Elmo1|140580|engulfment and cell motility 1, ced-12 homolog (C. elegans)
mm9_v1_chr6_+_67846144_67846176	2.7822	CDX1,2,4.p2	
mm9_v1_chr7_-_116651647_116651647	2.77257	CDX1,2,4.p2	AY572454|Trim66|330627|tripartite motif-containing 66	AY572455|Trim66|330627|tripartite motif-containing 66	NM_001170912|Trim66|330627|tripartite motif-containing 66	NM_181853|Trim66|330627|tripartite motif-containing 66
mm9_v1_chr9_+_65738129_65738143	2.76222	CDX1,2,4.p2	AK011090|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene	NM_026515|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene
mm9_v1_chr5_-_123438517_123438541	2.74226	CDX1,2,4.p2	NM_001005866|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr4_-_148511650_148511708	2.73593	CDX1,2,4.p2	BC138926|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	BC138927|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK011725|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	BC048521|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK012995|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK013038|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	NM_027263|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1
mm9_v1_chr10_-_18731766_18731781	2.72446	CDX1,2,4.p2	AK171326|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK172529|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	NM_001166402|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3
mm9_v1_chr10_-_44178474_44178587	2.71345	CDX1,2,4.p2	AK133503|Prdm1|12142|PR domain containing 1, with ZNF domain	BC129801|Prdm1|12142|PR domain containing 1, with ZNF domain	NM_007548|Prdm1|12142|PR domain containing 1, with ZNF domain	U08185|Prdm1|12142|PR domain containing 1, with ZNF domain
mm9_v1_chr11_+_87607531_87607556	2.70444	CDX1,2,4.p2	AY500847|Mpo|17523|myeloperoxidase
mm9_v1_chr9_-_70452528_70452545	2.69493	CDX1,2,4.p2	AK041072|Fam63b|235461|family with sequence similarity 63, member B
mm9_v1_chr7_+_23840558_23840558	2.69479	CDX1,2,4.p2	NM_001166747|Vmn1r135|667404|vomeronasal 1 receptor 135	NM_001166755|Vmn1r163|667586|vomeronasal 1 receptor 163
mm9_v1_chr14_-_66452720_66452805	2.69102	CDX1,2,4.p2	BC033303|Esco2|71988|establishment of cohesion 1 homolog 2 (S. cerevisiae)	BC071275|Esco2|71988|establishment of cohesion 1 homolog 2 (S. cerevisiae)	AK166457|Esco2|71988|establishment of cohesion 1 homolog 2 (S. cerevisiae)	AK050845|Esco2|71988|establishment of cohesion 1 homolog 2 (S. cerevisiae)	AK144685|Esco2|71988|establishment of cohesion 1 homolog 2 (S. cerevisiae)	NM_028039|Esco2|71988|establishment of cohesion 1 homolog 2 (S. cerevisiae)
mm9_v1_chr7_-_23156057_23156057	2.67756	CDX1,2,4.p2	NM_001166713|Gm5728|435949|predicted gene 5728	NM_001166751|Gm8660|667485|predicted gene 8660
mm9_v1_chr9_+_44143931_44144022	2.67751	CDX1,2,4.p2	
mm9_v1_chr2_-_35316760_35317051	2.65668	CDX1,2,4.p2	BC006810|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK088605|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	M26925|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	M85153|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AF297615|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	NM_001145821|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	NM_010283|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK004753|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK159087|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3
mm9_v1_chr6_-_60779848_60779848	2.65598	CDX1,2,4.p2	AF179273|Snca|20617|synuclein, alpha	NM_009221|Snca|20617|synuclein, alpha
mm9_v1_chr8_-_22235728_22235728	2.65553	CDX1,2,4.p2	AY761183|Gm14851|634825|predicted gene 14851	NM_001177482|Gm14851|634825|predicted gene 14851
mm9_v1_chr5_+_140981515_140981584	2.64385	CDX1,2,4.p2	NM_021528|Chst12|59031|carbohydrate sulfotransferase 12	AK142155|Chst12|59031|carbohydrate sulfotransferase 12	BC003201|Chst12|59031|carbohydrate sulfotransferase 12
mm9_v1_chr18_-_36886375_36886388	2.63369	CDX1,2,4.p2	AK149744|Cd14|12475|CD14 antigen
mm9_v1_chr5_+_115346942_115346944	2.6336	CDX1,2,4.p2	NM_011854|Oasl2|23962|2'-5' oligoadenylate synthetase-like 2	AF068835|Oasl2|23962|2'-5' oligoadenylate synthetase-like 2
mm9_v1_chr1_+_179375951_179375951	2.62142	CDX1,2,4.p2	AF140224|Zfp238|30928|zinc finger protein 238	NM_013915|Zfp238|30928|zinc finger protein 238
mm9_v1_chr1_+_154622471_154622540	2.62055	CDX1,2,4.p2	
mm9_v1_chr7_+_21947203_21947203	2.6155	CDX1,2,4.p2	NM_001166707|Vmn1r123|384695|vomeronasal 1 receptor 123
mm9_v1_chr5_+_130535973_130536156	2.60244	CDX1,2,4.p2	
mm9_v1_chr7_+_23307985_23307985	2.59577	CDX1,2,4.p2	NM_001166738|Vmn1r104|667135|vomeronasal 1 receptor 104	NM_001166752|Vmn1r152|667504|vomeronasal 1 receptor 152
mm9_v1_chr9_+_7347373_7347457	2.5764	CDX1,2,4.p2	NM_008605|Mmp12|17381|matrix metallopeptidase 12	AK089452|Mmp12|17381|matrix metallopeptidase 12	AK089523|Mmp12|17381|matrix metallopeptidase 12	AK090051|Mmp12|17381|matrix metallopeptidase 12	AK150596|Mmp12|17381|matrix metallopeptidase 12	AK151021|Mmp12|17381|matrix metallopeptidase 12	AK151273|Mmp12|17381|matrix metallopeptidase 12	AK151933|Mmp12|17381|matrix metallopeptidase 12	AK155743|Mmp12|17381|matrix metallopeptidase 12	AK155747|Mmp12|17381|matrix metallopeptidase 12	AK155748|Mmp12|17381|matrix metallopeptidase 12	AK155841|Mmp12|17381|matrix metallopeptidase 12	AK170360|Mmp12|17381|matrix metallopeptidase 12	AK170667|Mmp12|17381|matrix metallopeptidase 12	AK170976|Mmp12|17381|matrix metallopeptidase 12	AK171006|Mmp12|17381|matrix metallopeptidase 12	AK171036|Mmp12|17381|matrix metallopeptidase 12	AK171176|Mmp12|17381|matrix metallopeptidase 12	AK171428|Mmp12|17381|matrix metallopeptidase 12	AK171447|Mmp12|17381|matrix metallopeptidase 12	AK171448|Mmp12|17381|matrix metallopeptidase 12	AK171449|Mmp12|17381|matrix metallopeptidase 12	AK171450|Mmp12|17381|matrix metallopeptidase 12	AK171466|Mmp12|17381|matrix metallopeptidase 12	AK171468|Mmp12|17381|matrix metallopeptidase 12	AK171470|Mmp12|17381|matrix metallopeptidase 12	AK171472|Mmp12|17381|matrix metallopeptidase 12	AK171485|Mmp12|17381|matrix metallopeptidase 12	AK171518|Mmp12|17381|matrix metallopeptidase 12	AK171542|Mmp12|17381|matrix metallopeptidase 12	AK171570|Mmp12|17381|matrix metallopeptidase 12	AK089309|Mmp12|17381|matrix metallopeptidase 12	AK155139|Mmp12|17381|matrix metallopeptidase 12	AK155865|Mmp12|17381|matrix metallopeptidase 12	AK170364|Mmp12|17381|matrix metallopeptidase 12	AK170798|Mmp12|17381|matrix metallopeptidase 12	AK170804|Mmp12|17381|matrix metallopeptidase 12	AK171032|Mmp12|17381|matrix metallopeptidase 12	AK171435|Mmp12|17381|matrix metallopeptidase 12	AK089295|Mmp12|17381|matrix metallopeptidase 12	AK089335|Mmp12|17381|matrix metallopeptidase 12	BC019135|Mmp12|17381|matrix metallopeptidase 12	CT010377|Mmp12|17381|matrix metallopeptidase 12	M82831|Mmp12|17381|matrix metallopeptidase 12
mm9_v1_chr7_+_29581002_29581006	2.56914	CDX1,2,4.p2	AK082828|Rinl|320435|Ras and Rab interactor-like
mm9_v1_chr15_-_74593991_74594015	2.56749	CDX1,2,4.p2	BC025135|Ly6d|17068|lymphocyte antigen 6 complex, locus D	NM_010742|Ly6d|17068|lymphocyte antigen 6 complex, locus D	X63782|Ly6d|17068|lymphocyte antigen 6 complex, locus D
mm9_v1_chr8_+_77972592_77972689	2.55866	CDX1,2,4.p2	AK005693|1700007B14Rik|71831|RIKEN cDNA 1700007B14 gene	NM_001164235|1700007B14Rik|71831|RIKEN cDNA 1700007B14 gene	NM_027944|1700007B14Rik|71831|RIKEN cDNA 1700007B14 gene	BC117767|1700007B14Rik|71831|RIKEN cDNA 1700007B14 gene	BC117768|1700007B14Rik|71831|RIKEN cDNA 1700007B14 gene
mm9_v1_chr17_-_28697643_28697658	2.55205	CDX1,2,4.p2	BC042935|Clps|109791|colipase, pancreatic	AF414676|Clps|109791|colipase, pancreatic	AF414677|Clps|109791|colipase, pancreatic	AK028141|Clps|109791|colipase, pancreatic	AK008635|Clps|109791|colipase, pancreatic	AK008834|Clps|109791|colipase, pancreatic	AK008839|Clps|109791|colipase, pancreatic	AK008874|Clps|109791|colipase, pancreatic	AK008879|Clps|109791|colipase, pancreatic	AK019005|Clps|109791|colipase, pancreatic	AK019047|Clps|109791|colipase, pancreatic	AK008815|Clps|109791|colipase, pancreatic	NM_025469|Clps|109791|colipase, pancreatic
mm9_v1_chr7_+_22399110_22399110	2.55038	CDX1,2,4.p2	NM_001166748|Vmn1r139|667444|vomeronasal 1 receptor 139
mm9_v1_chr7_+_22881885_22881885	2.55038	CDX1,2,4.p2	NM_001166748|Vmn1r139|667444|vomeronasal 1 receptor 139
mm9_v1_chr7_+_21556203_21556203	2.55038	CDX1,2,4.p2	NM_001166847|Vmn1r112|100043569|vomeronasal 1 receptor 112
mm9_v1_chr7_+_23546715_23546715	2.55038	CDX1,2,4.p2	NM_001166754|Vmn1r157|667551|vomeronasal 1 receptor 157	NM_001166845|Vmn1r109|100043559|vomeronasal 1 receptor 109
mm9_v1_chr6_-_69765093_69765126	2.54128	CDX1,2,4.p2	
mm9_v1_chr8_+_106774774_106774855	2.53969	CDX1,2,4.p2	AK005577|Cklf|75458|chemokine-like factor	AY046597|Cklf|75458|chemokine-like factor	NM_029295|Cklf|75458|chemokine-like factor	AK046397|Cklf|75458|chemokine-like factor	AK086063|Cklf|75458|chemokine-like factor	AK032759|Cklf|75458|chemokine-like factor	AK050112|Cklf|75458|chemokine-like factor	NM_001037841|Cklf|75458|chemokine-like factor	BC027684|Cklf|75458|chemokine-like factor	AF401530|Cklf|75458|chemokine-like factor	AF401531|Cklf|75458|chemokine-like factor	AY047360|Cklf|75458|chemokine-like factor
mm9_v1_chr6_-_3349415_3349463	2.53951	CDX1,2,4.p2	AK172649|Samd9l|209086|sterile alpha motif domain containing 9-like
mm9_v1_chr7_+_21003290_21003290	2.53348	CDX1,2,4.p2	NM_001166844|Vmn1r100|100043536|vomeronasal 1 receptor 100
mm9_v1_chr6_-_48658211_48658242	2.53106	CDX1,2,4.p2	AK030902|Gimap6|231931|GTPase, IMAP family member 6	AK087275|Gimap6|231931|GTPase, IMAP family member 6	AF503921|Gimap6|231931|GTPase, IMAP family member 6	NM_153175|Gimap6|231931|GTPase, IMAP family member 6
mm9_v1_chr3_+_3508029_3508207	2.52895	CDX1,2,4.p2	AK143816|Hnf4g|30942|hepatocyte nuclear factor 4, gamma	NM_013920|Hnf4g|30942|hepatocyte nuclear factor 4, gamma	AJ242626|Hnf4g|30942|hepatocyte nuclear factor 4, gamma	BC125519|Hnf4g|30942|hepatocyte nuclear factor 4, gamma
mm9_v1_chr2_-_33323966_33324113	2.5136	CDX1,2,4.p2	AK206442|Zbtb43|71834|zinc finger and BTB domain containing 43	AK212293|Zbtb43|71834|zinc finger and BTB domain containing 43	AK122277|Zbtb43|71834|zinc finger and BTB domain containing 43	AK005818|Zbtb43|71834|zinc finger and BTB domain containing 43	AK147806|Zbtb43|71834|zinc finger and BTB domain containing 43	BC043117|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_001025594|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_027947|Zbtb43|71834|zinc finger and BTB domain containing 43
mm9_v1_chr7_+_23198601_23198601	2.50799	CDX1,2,4.p2	NM_001166844|Vmn1r100|100043536|vomeronasal 1 receptor 100
mm9_v1_chr7_+_22296798_22296798	2.50396	CDX1,2,4.p2	NM_001166753|Vmn1r155|667530|vomeronasal 1 receptor 155	NM_001166759|Vmn1r107|673977|vomeronasal 1 receptor 107	NM_001166846|Vmn1r110|100043561|vomeronasal 1 receptor 110	NM_001166848|Vmn1r130|100043596|vomeronasal 1 receptor 130	NM_001166849|Vmn1r137|100043614|vomeronasal 1 receptor 137	NM_001166850|Vmn1r165|100043667|vomeronasal 1 receptor 165
mm9_v1_chr10_-_17742931_17743059	2.5035	CDX1,2,4.p2	BC039801|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene	AK171138|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene	BC098509|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene	AK013984|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene	NM_028440|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene
mm9_v1_chr6_-_56654667_56654692	2.50006	CDX1,2,4.p2	BC048459|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK008480|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK011218|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC061085|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK009617|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC132626|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC132628|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_025520|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr14_-_48037815_48037862	2.49988	CDX1,2,4.p2	BC058087|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	BC027273|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK129032|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK147955|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK048470|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK085882|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5
mm9_v1_chr5_-_21290925_21290949	2.49015	CDX1,2,4.p2	U53208|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK161347|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2
mm9_v1_chr7_+_29581063_29581076	2.48794	CDX1,2,4.p2	AK168472|Rinl|320435|Ras and Rab interactor-like
mm9_v1_chr7_+_134439888_134439975	2.48293	CDX1,2,4.p2	AK155566|Itgal|16408|integrin alpha L	AK171389|Itgal|16408|integrin alpha L	M60778|Itgal|16408|integrin alpha L	BC145094|Itgal|16408|integrin alpha L	BC145095|Itgal|16408|integrin alpha L	BC145096|Itgal|16408|integrin alpha L	BC145802|Itgal|16408|integrin alpha L	AF065901|Itgal|16408|integrin alpha L	AF065902|Itgal|16408|integrin alpha L	AK152913|Itgal|16408|integrin alpha L
mm9_v1_chr1_-_173465423_173465424	2.4735	CDX1,2,4.p2	AB016496|Itln1|16429|intelectin 1 (galactofuranose binding)	NM_010584|Itln1|16429|intelectin 1 (galactofuranose binding)	AK007447|Itln1|16429|intelectin 1 (galactofuranose binding)
mm9_v1_chr11_+_20991293_20991320	2.47341	CDX1,2,4.p2	AK020915|Peli1|67245|pellino 1
mm9_v1_chr2_-_26883441_26883517	2.47178	CDX1,2,4.p2	BC058210|Slc2a6|227659|solute carrier family 2 (facilitated glucose transporter), member 6	BC141168|Slc2a6|227659|solute carrier family 2 (facilitated glucose transporter), member 6	BC145480|Slc2a6|227659|solute carrier family 2 (facilitated glucose transporter), member 6	AK172411|Slc2a6|227659|solute carrier family 2 (facilitated glucose transporter), member 6	AK079650|Slc2a6|227659|solute carrier family 2 (facilitated glucose transporter), member 6	BC025498|Slc2a6|227659|solute carrier family 2 (facilitated glucose transporter), member 6	AK150104|Slc2a6|227659|solute carrier family 2 (facilitated glucose transporter), member 6	AK166312|Slc2a6|227659|solute carrier family 2 (facilitated glucose transporter), member 6	AK163445|Slc2a6|227659|solute carrier family 2 (facilitated glucose transporter), member 6	AK167904|Slc2a6|227659|solute carrier family 2 (facilitated glucose transporter), member 6	AK137441|Slc2a6|227659|solute carrier family 2 (facilitated glucose transporter), member 6	AK089246|Slc2a6|227659|solute carrier family 2 (facilitated glucose transporter), member 6	NM_001177627|Slc2a6|227659|solute carrier family 2 (facilitated glucose transporter), member 6	NM_172659|Slc2a6|227659|solute carrier family 2 (facilitated glucose transporter), member 6
mm9_v1_chr18_-_36886307_36886353	2.47037	CDX1,2,4.p2	BC057889|Cd14|12475|CD14 antigen	NM_009841|Cd14|12475|CD14 antigen
mm9_v1_chr9_-_7872896_7873169	2.46233	CDX1,2,4.p2	AK172636|Birc3|11796|baculoviral IAP repeat-containing 3	BC011338|Birc3|11796|baculoviral IAP repeat-containing 3	U88908|Birc3|11796|baculoviral IAP repeat-containing 3	AK162108|Birc3|11796|baculoviral IAP repeat-containing 3	NM_007464|Birc3|11796|baculoviral IAP repeat-containing 3
mm9_v1_chr7_+_21119185_21119185	2.44613	CDX1,2,4.p2	NM_001166738|Vmn1r104|667135|vomeronasal 1 receptor 104	NM_001166752|Vmn1r152|667504|vomeronasal 1 receptor 152
mm9_v1_chr7_-_21630003_21630003	2.43407	CDX1,2,4.p2	NM_001166745|Vmn1r115|667273|vomeronasal 1 receptor 115
mm9_v1_chr11_-_61680770_61680775	2.43166	CDX1,2,4.p2	AK138613|A530017D24Rik|103880|RIKEN cDNA A530017D24 gene
mm9_v1_chr1_-_173465366_173465415	2.42907	CDX1,2,4.p2	BC150795|Itln1|16429|intelectin 1 (galactofuranose binding)	AY157363|Itln1|16429|intelectin 1 (galactofuranose binding)	AY157364|Itln1|16429|intelectin 1 (galactofuranose binding)	AY619693|Itln1|16429|intelectin 1 (galactofuranose binding)
mm9_v1_chr7_-_20753725_20753725	2.41413	CDX1,2,4.p2	NM_001166723|Vmn1r94|620537|vomeronasal 1 receptor 94	NM_001166749|Vmn1r142|667464|vomeronasal 1 receptor 142
mm9_v1_chr5_+_106039499_106039528	2.41382	CDX1,2,4.p2	AK081556|Lrrc8c|100604|leucine rich repeat containing 8 family, member C
mm9_v1_chr12_-_114665550_114665585	2.38175	CDX1,2,4.p2	AK134155|Ighg|380794|Immunoglobulin heavy chain (gamma polypeptide)
mm9_v1_chr10_-_36858671_36858801	2.37421	CDX1,2,4.p2	BC046601|Marcks|17118|myristoylated alanine rich protein kinase C substrate	M60474|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC002068|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC039911|Marcks|17118|myristoylated alanine rich protein kinase C substrate	NM_008538|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr13_-_108516475_108516490	2.36961	CDX1,2,4.p2	AK013620|Zswim6|67263|zinc finger, SWIM domain containing 6	AK019357|Zswim6|67263|zinc finger, SWIM domain containing 6
mm9_v1_chr4_+_102262447_102262471	2.36922	CDX1,2,4.p2	AK051102|Pde4b|18578|phosphodiesterase 4B, cAMP specific	NM_001177981|Pde4b|18578|phosphodiesterase 4B, cAMP specific	BC071259|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr1_-_183111470_183111575	2.36826	CDX1,2,4.p2	AK211036|Wdr26|226757|WD repeat domain 26
mm9_v1_chr8_-_4779533_4779566	2.3626	CDX1,2,4.p2	AF017152|Shcbp1|20419|Shc SH2-domain binding protein 1	NM_011369|Shcbp1|20419|Shc SH2-domain binding protein 1	AK162943|Shcbp1|20419|Shc SH2-domain binding protein 1	AK149580|Shcbp1|20419|Shc SH2-domain binding protein 1	AK137496|Shcbp1|20419|Shc SH2-domain binding protein 1	BC070455|Shcbp1|20419|Shc SH2-domain binding protein 1	AK144966|Shcbp1|20419|Shc SH2-domain binding protein 1	AK052944|Shcbp1|20419|Shc SH2-domain binding protein 1	AK051205|Shcbp1|20419|Shc SH2-domain binding protein 1
mm9_v1_chr9_-_14185950_14185986	2.35261	CDX1,2,4.p2	AK142446|Endod1|71946|endonuclease domain containing 1
mm9_v1_chr16_+_27388907_27389196	2.34371	CDX1,2,4.p2	BC144895|Ccdc50|67501|coiled-coil domain containing 50	BC144898|Ccdc50|67501|coiled-coil domain containing 50	BC145933|Ccdc50|67501|coiled-coil domain containing 50	BC145935|Ccdc50|67501|coiled-coil domain containing 50	NM_001025615|Ccdc50|67501|coiled-coil domain containing 50	NM_026202|Ccdc50|67501|coiled-coil domain containing 50	AK162434|Ccdc50|67501|coiled-coil domain containing 50	AK016827|Ccdc50|67501|coiled-coil domain containing 50	AK151672|Ccdc50|67501|coiled-coil domain containing 50	AK147820|Ccdc50|67501|coiled-coil domain containing 50	AK077557|Ccdc50|67501|coiled-coil domain containing 50	AK165214|Ccdc50|67501|coiled-coil domain containing 50	AK012190|Ccdc50|67501|coiled-coil domain containing 50	AJ534985|Ccdc50|67501|coiled-coil domain containing 50
mm9_v1_chr7_-_23804941_23804941	2.33493	CDX1,2,4.p2	NM_001167166|Gm4216|100043083|predicted gene 4216	NM_001167167|Gm4177|100043025|predicted gene 4177
mm9_v1_chr7_-_22581746_22581746	2.33493	CDX1,2,4.p2	NM_001167166|Gm4216|100043083|predicted gene 4216	NM_001167167|Gm4177|100043025|predicted gene 4177
mm9_v1_chr4_+_134420419_134420535	2.33424	CDX1,2,4.p2	BC145805|Rhd|19746|Rh blood group, D antigen	NM_011270|Rhd|19746|Rh blood group, D antigen	AF057524|Rhd|19746|Rh blood group, D antigen	AK089642|Rhd|19746|Rh blood group, D antigen	AF069311|Rhd|19746|Rh blood group, D antigen	AK079335|Rhd|19746|Rh blood group, D antigen	AK171641|Rhd|19746|Rh blood group, D antigen	AB015189|Rhd|19746|Rh blood group, D antigen	AB015190|Rhd|19746|Rh blood group, D antigen	AF047827|Rhd|19746|Rh blood group, D antigen	AK157850|Rhd|19746|Rh blood group, D antigen	AF012430|Rhd|19746|Rh blood group, D antigen
mm9_v1_chr16_+_44867209_44867209	2.32572	CDX1,2,4.p2	AY230198|Cd200r2|271375|Cd200 receptor 2	NM_206535|Cd200r2|271375|Cd200 receptor 2
mm9_v1_chr4_-_141241630_141241630	2.32454	CDX1,2,4.p2	BC150752|Rsc1a1|69994|regulatory solute carrier protein, family 1, member 1	NM_023544|Rsc1a1|69994|regulatory solute carrier protein, family 1, member 1
mm9_v1_chr11_-_40546863_40546938	2.31279	CDX1,2,4.p2	AK163410|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	AF079222|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	AK020144|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	AK164410|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	BC021427|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	AK041617|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	AK164597|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	AF031932|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	AK143123|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	NM_013552|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)
mm9_v1_chr1_+_135206360_135206408	2.30697	CDX1,2,4.p2	AY707855|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)	BC024448|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)	AK002581|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)	AK141378|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)	NM_026680|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)
mm9_v1_chr8_+_15032567_15032716	2.30654	CDX1,2,4.p2	BC049667|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11	BC038875|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11
mm9_v1_chr2_-_87332571_87332574	2.30354	CDX1,2,4.p2	BC052825|Pramel7|347712|preferentially expressed antigen in melanoma like 7	AF490343|Pramel7|347712|preferentially expressed antigen in melanoma like 7	NM_178250|Pramel7|347712|preferentially expressed antigen in melanoma like 7
mm9_v1_chr7_+_51097638_51097638	2.29799	CDX1,2,4.p2	AK003996|Klk5|68668|kallikrein related-peptidase 5	BC139475|Klk5|68668|kallikrein related-peptidase 5	BC139478|Klk5|68668|kallikrein related-peptidase 5	NM_026806|Klk5|68668|kallikrein related-peptidase 5
mm9_v1_chr1_-_183112962_183112965	2.29784	CDX1,2,4.p2	AK167017|Wdr26|226757|WD repeat domain 26	AK167116|Wdr26|226757|WD repeat domain 26
mm9_v1_chr16_-_36408420_36408542	2.27631	CDX1,2,4.p2	M92418|Stfa2|20862|stefin A2	NM_001082545|Stfa2|20862|stefin A2	BC138004|Stfa2|20862|stefin A2
mm9_v1_chr6_-_3295980_3296101	2.27606	CDX1,2,4.p2	AK035387|9530028C05|330256|hypothetical protein 9530028C05
mm9_v1_chr9_+_20692618_20692740	2.26484	CDX1,2,4.p2	NM_145610|Ppan|235036|peter pan homolog (Drosophila)	BC014688|Ppan|235036|peter pan homolog (Drosophila)	AK085695|Ppan|235036|peter pan homolog (Drosophila)	AK039027|Ppan|235036|peter pan homolog (Drosophila)	AK172615|Ppan|235036|peter pan homolog (Drosophila)	AK171672|Ppan|235036|peter pan homolog (Drosophila)	BC059277|Ppan|235036|peter pan homolog (Drosophila)
mm9_v1_chr5_-_21290971_21291070	2.26282	CDX1,2,4.p2	AK013295|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	D63784|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	NM_009584|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	BC021755|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK167991|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK131964|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK161376|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK162409|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK136951|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	BC052027|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK169850|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2
mm9_v1_chr7_-_90803895_90803940	2.26221	CDX1,2,4.p2	AF017111|Il16|16170|interleukin 16	AK137802|Il16|16170|interleukin 16	AK169551|Il16|16170|interleukin 16	AK038319|Il16|16170|interleukin 16
mm9_v1_chr2_-_91019477_91019477	2.25679	CDX1,2,4.p2	NM_001177720|Madd|228355|MAP-kinase activating death domain
mm9_v1_chr7_+_73205454_73205492	2.24687	CDX1,2,4.p2	BC013777|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	BC029642|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	AF230356|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'
mm9_v1_chr14_+_103446209_103446258	2.24348	CDX1,2,4.p2	NM_008392|Irg1|16365|immunoresponsive gene 1	AK152177|Irg1|16365|immunoresponsive gene 1	AK152248|Irg1|16365|immunoresponsive gene 1	AK152332|Irg1|16365|immunoresponsive gene 1	AK152635|Irg1|16365|immunoresponsive gene 1	AK153013|Irg1|16365|immunoresponsive gene 1	AK172298|Irg1|16365|immunoresponsive gene 1	AK172001|Irg1|16365|immunoresponsive gene 1	AK089891|Irg1|16365|immunoresponsive gene 1
mm9_v1_chr1_-_172906094_172906244	2.24207	CDX1,2,4.p2	M14276|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	U51629|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	M17515|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	M14216|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	BC011305|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	BC019758|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	BC038070|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	AK171316|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	AK170035|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	AK155329|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	AK171254|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	AK080885|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	AK089266|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	AK150613|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	NM_001077189|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	NM_010187|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb
mm9_v1_chr13_+_5860749_5860918	2.24107	CDX1,2,4.p2	AK147904|Klf6|23849|Kruppel-like factor 6	AK053584|Klf6|23849|Kruppel-like factor 6	AK146615|Klf6|23849|Kruppel-like factor 6	BC020042|Klf6|23849|Kruppel-like factor 6	AK159420|Klf6|23849|Kruppel-like factor 6	AK144137|Klf6|23849|Kruppel-like factor 6	AK151769|Klf6|23849|Kruppel-like factor 6	AF072403|Klf6|23849|Kruppel-like factor 6
mm9_v1_chr2_+_103810274_103810481	2.23959	CDX1,2,4.p2	AK013416|Lmo2|16909|LIM domain only 2	BC057880|Lmo2|16909|LIM domain only 2	NM_001142335|Lmo2|16909|LIM domain only 2	NM_008505|Lmo2|16909|LIM domain only 2
mm9_v1_chr8_-_87889165_87889245	2.23938	CDX1,2,4.p2	EU403565|Mylk3|213435|myosin light chain kinase 3	BC137983|Mylk3|213435|myosin light chain kinase 3	BC145079|Mylk3|213435|myosin light chain kinase 3	AK146683|Mylk3|213435|myosin light chain kinase 3	NM_175441|Mylk3|213435|myosin light chain kinase 3	AK052858|Mylk3|213435|myosin light chain kinase 3
mm9_v1_chr17_+_34272535_34272615	2.23879	CDX1,2,4.p2	AK160460|H2-DMa|14998|histocompatibility 2, class II, locus DMa	BC001996|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X62742|H2-DMa|14998|histocompatibility 2, class II, locus DMa	AK169900|H2-DMa|14998|histocompatibility 2, class II, locus DMa	BC049992|H2-DMa|14998|histocompatibility 2, class II, locus DMa	NM_010386|H2-DMa|14998|histocompatibility 2, class II, locus DMa	U35324|H2-DMa|14998|histocompatibility 2, class II, locus DMa	U35325|H2-DMa|14998|histocompatibility 2, class II, locus DMa	U35326|H2-DMa|14998|histocompatibility 2, class II, locus DMa	U35327|H2-DMa|14998|histocompatibility 2, class II, locus DMa	U35328|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90783|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90784|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90785|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90786|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90787|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90788|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90789|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90790|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90791|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90792|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90793|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90794|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90795|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90963|H2-DMa|14998|histocompatibility 2, class II, locus DMa
mm9_v1_chr14_-_62250728_62250729	2.23667	CDX1,2,4.p2	AK143097|Dleu2|668253|deleted in lymphocytic leukemia, 2	AK162803|Dleu2|668253|deleted in lymphocytic leukemia, 2	AK164623|Dleu2|668253|deleted in lymphocytic leukemia, 2
mm9_v1_chr1_-_135586436_135586684	2.23637	CDX1,2,4.p2	AK088503|Lax1|240754|lymphocyte transmembrane adaptor 1	AK040834|Lax1|240754|lymphocyte transmembrane adaptor 1	BC042765|Lax1|240754|lymphocyte transmembrane adaptor 1	NM_172842|Lax1|240754|lymphocyte transmembrane adaptor 1	NM_001159649|Lax1|240754|lymphocyte transmembrane adaptor 1
mm9_v1_chr4_-_149072755_149072816	2.23365	CDX1,2,4.p2	BC035203|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164049|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164050|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_008840|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm9_v1_chr17_+_35403998_35404048	2.22989	CDX1,2,4.p2	
mm9_v1_chr16_+_48872720_48872733	2.22204	CDX1,2,4.p2	NM_181596|Retnlg|245195|resistin like gamma
mm9_v1_chr7_+_20779058_20779058	2.22056	CDX1,2,4.p2	NM_001166750|Vmn1r143|667469|vomeronasal 1 receptor 143	NM_001167538|Vmn1r95|100312475|vomeronasal 1 receptor, 95
mm9_v1_chr1_-_175810248_175810365	2.22042	CDX1,2,4.p2	AK136391|Mndal|100040462|myeloid nuclear differentiation antigen like	NM_001170853|Mndal|100040462|myeloid nuclear differentiation antigen like
mm9_v1_chr7_+_75418724_75418724	2.21338	CDX1,2,4.p2	NM_001013811|Fam169b|434197|family with sequence similarity 169, member B
mm9_v1_chr7_+_21254266_21254266	2.20836	CDX1,2,4.p2	NM_001166753|Vmn1r155|667530|vomeronasal 1 receptor 155	NM_001166759|Vmn1r107|673977|vomeronasal 1 receptor 107	NM_001166846|Vmn1r110|100043561|vomeronasal 1 receptor 110	NM_001166848|Vmn1r130|100043596|vomeronasal 1 receptor 130	NM_001166849|Vmn1r137|100043614|vomeronasal 1 receptor 137	NM_001166850|Vmn1r165|100043667|vomeronasal 1 receptor 165
mm9_v1_chr7_+_23443036_23443036	2.20836	CDX1,2,4.p2	NM_001166753|Vmn1r155|667530|vomeronasal 1 receptor 155	NM_001166759|Vmn1r107|673977|vomeronasal 1 receptor 107	NM_001166846|Vmn1r110|100043561|vomeronasal 1 receptor 110	NM_001166848|Vmn1r130|100043596|vomeronasal 1 receptor 130	NM_001166849|Vmn1r137|100043614|vomeronasal 1 receptor 137	NM_001166850|Vmn1r165|100043667|vomeronasal 1 receptor 165
mm9_v1_chr7_+_21453935_21453935	2.20836	CDX1,2,4.p2	NM_001166753|Vmn1r155|667530|vomeronasal 1 receptor 155	NM_001166759|Vmn1r107|673977|vomeronasal 1 receptor 107	NM_001166846|Vmn1r110|100043561|vomeronasal 1 receptor 110	NM_001166848|Vmn1r130|100043596|vomeronasal 1 receptor 130	NM_001166849|Vmn1r137|100043614|vomeronasal 1 receptor 137	NM_001166850|Vmn1r165|100043667|vomeronasal 1 receptor 165
mm9_v1_chr12_-_102267159_102267268	2.19707	CDX1,2,4.p2	AY339881|Ccdc88c|68339|coiled-coil domain containing 88C	NM_026681|Ccdc88c|68339|coiled-coil domain containing 88C	BC043115|Ccdc88c|68339|coiled-coil domain containing 88C	BC063255|Ccdc88c|68339|coiled-coil domain containing 88C
mm9_v1_chr4_-_136891931_136891995	2.19358	CDX1,2,4.p2	AK213611|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	M79301|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L11318|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L78075|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)
mm9_v1_chr19_+_39135495_39135572	2.19315	CDX1,2,4.p2	NM_028191|Cyp2c65|72303|cytochrome P450, family 2, subfamily c, polypeptide 65	AY227733|Cyp2c65|72303|cytochrome P450, family 2, subfamily c, polypeptide 65	BC051089|Cyp2c65|72303|cytochrome P450, family 2, subfamily c, polypeptide 65	BC118514|Cyp2c65|72303|cytochrome P450, family 2, subfamily c, polypeptide 65	BC117531|Cyp2c65|72303|cytochrome P450, family 2, subfamily c, polypeptide 65	AK008688|Cyp2c65|72303|cytochrome P450, family 2, subfamily c, polypeptide 65
mm9_v1_chr2_-_34609888_34609977	2.18773	CDX1,2,4.p2	BC048847|Gapvd1|66691|GTPase activating protein and VPS9 domains 1	AK150026|Gapvd1|66691|GTPase activating protein and VPS9 domains 1	AK165047|Gapvd1|66691|GTPase activating protein and VPS9 domains 1
mm9_v1_chr6_-_69193672_69193737	2.18284	CDX1,2,4.p2	
mm9_v1_chr7_+_24002350_24002350	2.17784	CDX1,2,4.p2	BC154405|Vmn1r178|232959|vomeronasal 1 receptor 178	NM_001166753|Vmn1r155|667530|vomeronasal 1 receptor 155	NM_001166759|Vmn1r107|673977|vomeronasal 1 receptor 107	NM_001166846|Vmn1r110|100043561|vomeronasal 1 receptor 110	NM_001166848|Vmn1r130|100043596|vomeronasal 1 receptor 130	NM_001166849|Vmn1r137|100043614|vomeronasal 1 receptor 137	NM_001166850|Vmn1r165|100043667|vomeronasal 1 receptor 165
mm9_v1_chr7_+_22779605_22779605	2.17784	CDX1,2,4.p2	NM_001166753|Vmn1r155|667530|vomeronasal 1 receptor 155	NM_001166759|Vmn1r107|673977|vomeronasal 1 receptor 107	NM_001166846|Vmn1r110|100043561|vomeronasal 1 receptor 110	NM_001166848|Vmn1r130|100043596|vomeronasal 1 receptor 130	NM_001166849|Vmn1r137|100043614|vomeronasal 1 receptor 137	NM_001166850|Vmn1r165|100043667|vomeronasal 1 receptor 165
mm9_v1_chrX_+_34335651_34335798	2.16828	CDX1,2,4.p2	BC004570|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	BC086756|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	U10404|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK188826|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK195999|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr15_-_80935436_80935488	2.16583	CDX1,2,4.p2	NM_153049|Mkl1|223701|MKL (megakaryoblastic leukemia)/myocardin-like 1	AK155937|Mkl1|223701|MKL (megakaryoblastic leukemia)/myocardin-like 1
mm9_v1_chr9_-_14185399_14185474	2.16181	CDX1,2,4.p2	BC096490|Endod1|71946|endonuclease domain containing 1	AK079741|Endod1|71946|endonuclease domain containing 1	AK078056|Endod1|71946|endonuclease domain containing 1	BC019813|Endod1|71946|endonuclease domain containing 1	AK086102|Endod1|71946|endonuclease domain containing 1
mm9_v1_chr7_+_22974395_22974395	2.1604	CDX1,2,4.p2	NM_001166750|Vmn1r143|667469|vomeronasal 1 receptor 143	NM_001167538|Vmn1r95|100312475|vomeronasal 1 receptor, 95
mm9_v1_chr15_+_79921725_79921855	2.15647	CDX1,2,4.p2	BC138728|Syngr1|20972|synaptogyrin 1	BC138729|Syngr1|20972|synaptogyrin 1	NM_009303|Syngr1|20972|synaptogyrin 1	NM_207708|Syngr1|20972|synaptogyrin 1	AK044007|Syngr1|20972|synaptogyrin 1	AJ002306|Syngr1|20972|synaptogyrin 1	AK156134|Syngr1|20972|synaptogyrin 1	AK002972|Syngr1|20972|synaptogyrin 1	AK010442|Syngr1|20972|synaptogyrin 1	AK153096|Syngr1|20972|synaptogyrin 1	AK153187|Syngr1|20972|synaptogyrin 1	BC048172|Syngr1|20972|synaptogyrin 1	AK194549|Syngr1|20972|synaptogyrin 1
mm9_v1_chr7_+_21357946_21357946	2.12714	CDX1,2,4.p2	NM_001166754|Vmn1r157|667551|vomeronasal 1 receptor 157	NM_001166845|Vmn1r109|100043559|vomeronasal 1 receptor 109
mm9_v1_chr10_-_117261663_117261731	2.11915	CDX1,2,4.p2	M79314|Rap1b|215449|RAS related protein 1b	BC147700|Rap1b|215449|RAS related protein 1b	BC147713|Rap1b|215449|RAS related protein 1b
mm9_v1_chr7_+_28345494_28345525	2.11716	CDX1,2,4.p2	AK077369|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	NM_001122767|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	AK009941|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	AK140814|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	AK009456|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene
mm9_v1_chr16_+_17146981_17147071	2.11613	CDX1,2,4.p2	AK032396|Ydjc|69101|YdjC homolog (bacterial)	AK140044|Ydjc|69101|YdjC homolog (bacterial)	BC030425|Ydjc|69101|YdjC homolog (bacterial)	AK007503|Ydjc|69101|YdjC homolog (bacterial)	BC115584|Ydjc|69101|YdjC homolog (bacterial)	BC115585|Ydjc|69101|YdjC homolog (bacterial)	NM_026940|Ydjc|69101|YdjC homolog (bacterial)
mm9_v1_chr9_-_110959905_110960028	2.11533	CDX1,2,4.p2	BC038631|Ccrl2|54199|chemokine (C-C motif) receptor-like 2	AB009384|Ccrl2|54199|chemokine (C-C motif) receptor-like 2	AK151856|Ccrl2|54199|chemokine (C-C motif) receptor-like 2
mm9_v1_chr1_-_58558259_58558259	2.11046	CDX1,2,4.p2	AB190256|Orc2|18393|origin recognition complex, subunit 2	NM_001025378|Orc2|18393|origin recognition complex, subunit 2
mm9_v1_chr3_-_58934492_58934545	2.10828	CDX1,2,4.p2	BC028995|P2ry14|140795|purinergic receptor P2Y, G-protein coupled, 14	AK164982|P2ry14|140795|purinergic receptor P2Y, G-protein coupled, 14	AK140301|P2ry14|140795|purinergic receptor P2Y, G-protein coupled, 14	AF177211|P2ry14|140795|purinergic receptor P2Y, G-protein coupled, 14	BC058558|P2ry14|140795|purinergic receptor P2Y, G-protein coupled, 14	NM_001008497|P2ry14|140795|purinergic receptor P2Y, G-protein coupled, 14	NM_133200|P2ry14|140795|purinergic receptor P2Y, G-protein coupled, 14
mm9_v1_chrX_-_54579777_54579845	2.09899	CDX1,2,4.p2	AK028642|Arhgef6|73341|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
mm9_v1_chr1_+_155596555_155596633	2.08257	CDX1,2,4.p2	AK140815|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	NM_011882|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	BC003873|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
mm9_v1_chr10_-_17635007_17635085	2.07367	CDX1,2,4.p2	BC094026|Heca|380629|headcase homolog (Drosophila)	AK134782|Heca|380629|headcase homolog (Drosophila)
mm9_v1_chr11_-_83392129_83392139	2.06605	CDX1,2,4.p2	NM_011338|Ccl9|20308|chemokine (C-C motif) ligand 9
mm9_v1_chr17_+_55889248_55889329	2.06024	CDX1,2,4.p2	AK036459|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	NM_139138|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	AF396935|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	BC120538|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	BC120540|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	AK155935|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	AK037483|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	AY032690|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4
mm9_v1_chr2_-_30823346_30823454	2.04756	CDX1,2,4.p2	AK082936|Tor1a|30931|torsin family 1, member A (torsin A)	AK079728|Tor1a|30931|torsin family 1, member A (torsin A)	AJ298841|Tor1a|30931|torsin family 1, member A (torsin A)	AK038891|Tor1a|30931|torsin family 1, member A (torsin A)	AK160361|Tor1a|30931|torsin family 1, member A (torsin A)	BC017683|Tor1a|30931|torsin family 1, member A (torsin A)	NM_144884|Tor1a|30931|torsin family 1, member A (torsin A)
mm9_v1_chr11_+_61466766_61466787	2.0437	CDX1,2,4.p2	AK153888|Grap|71520|GRB2-related adaptor protein
mm9_v1_chr13_-_12612537_12612714	2.03043	CDX1,2,4.p2	AK148351|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	AK041545|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	AK042414|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	AF358671|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	NM_133643|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain
mm9_v1_chr17_+_35404109_35404141	2.02815	CDX1,2,4.p2	
mm9_v1_chr9_+_106109125_106109148	2.02415	CDX1,2,4.p2	AK002699|Twf2|23999|twinfilin, actin-binding protein, homolog 2 (Drosophila)	AK087422|Twf2|23999|twinfilin, actin-binding protein, homolog 2 (Drosophila)	AK003997|Twf2|23999|twinfilin, actin-binding protein, homolog 2 (Drosophila)
mm9_v1_chr5_-_101001209_101001243	2.02378	CDX1,2,4.p2	AF263458|Plac8|231507|placenta-specific 8	AK007369|Plac8|231507|placenta-specific 8	NM_139198|Plac8|231507|placenta-specific 8	AJ422151|Plac8|231507|placenta-specific 8
mm9_v1_chr6_+_53523365_53523387	2.02165	CDX1,2,4.p2	AK052230|Creb5|231991|cAMP responsive element binding protein 5	AK052451|Creb5|231991|cAMP responsive element binding protein 5	AK154148|Creb5|231991|cAMP responsive element binding protein 5	NM_172728|Creb5|231991|cAMP responsive element binding protein 5	AK170128|Creb5|231991|cAMP responsive element binding protein 5	AK155537|Creb5|231991|cAMP responsive element binding protein 5	BC098487|Creb5|231991|cAMP responsive element binding protein 5
mm9_v1_chr13_+_52678805_52678835	2.01936	CDX1,2,4.p2	AK049207|Sykb|20963|spleen tyrosine kinase	NM_001198977|Sykb|20963|spleen tyrosine kinase
mm9_v1_chr11_+_114530028_114530110	2.01901	CDX1,2,4.p2	BC094258|Rpl38|67671|ribosomal protein L38	BC094644|Rpl38|67671|ribosomal protein L38	NM_001048058|Rpl38|67671|ribosomal protein L38	BC081447|Rpl38|67671|ribosomal protein L38
mm9_v1_chr5_-_101001191_101001194	2.0158	CDX1,2,4.p2	BC010789|Plac8|231507|placenta-specific 8
mm9_v1_chr6_-_126889539_126889638	2.01488	CDX1,2,4.p2	BC003738|Rad51ap1|19362|RAD51 associated protein 1	AK010920|Rad51ap1|19362|RAD51 associated protein 1	U93583|Rad51ap1|19362|RAD51 associated protein 1	AK011379|Rad51ap1|19362|RAD51 associated protein 1	NM_009013|Rad51ap1|19362|RAD51 associated protein 1	AK079525|Rad51ap1|19362|RAD51 associated protein 1	AK077829|Rad51ap1|19362|RAD51 associated protein 1	AK166703|Rad51ap1|19362|RAD51 associated protein 1
mm9_v1_chr15_+_99984826_99984839	2.01327	CDX1,2,4.p2	AK030064|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	NM_172819|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	BC137857|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	BC137858|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm9_v1_chr14_-_25306261_25306271	2.00688	CDX1,2,4.p2	NM_001081247|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	AK170475|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A
mm9_v1_chr1_-_137064124_137064257	1.99083	CDX1,2,4.p2	AK158275|Gpr37l1|171469|G protein-coupled receptor 37-like 1	NM_134438|Gpr37l1|171469|G protein-coupled receptor 37-like 1
mm9_v1_chr6_-_99216494_99216530	1.9869	CDX1,2,4.p2	BC064764|Foxp1|108655|forkhead box P1	AK171994|Foxp1|108655|forkhead box P1	BC065386|Foxp1|108655|forkhead box P1	NM_001197321|Foxp1|108655|forkhead box P1	AK040800|Foxp1|108655|forkhead box P1
mm9_v1_chr13_+_83803830_83803849	1.97689	CDX1,2,4.p2	AK044589|Mef2c|17260|myocyte enhancer factor 2C
mm9_v1_chrX_+_34335647_34335650	1.97659	CDX1,2,4.p2	AK012751|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK002283|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK017881|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK088730|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	X70847|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr17_+_33102747_33102840	1.97098	CDX1,2,4.p2	NM_153063|Zfp472|224691|zinc finger protein 472	AK142395|Zfp472|224691|zinc finger protein 472	BC027407|Zfp472|224691|zinc finger protein 472	AY195875|Zfp472|224691|zinc finger protein 472	BC023090|Zfp472|224691|zinc finger protein 472
mm9_v1_chr10_+_126503214_126503242	1.95316	CDX1,2,4.p2	AK012202|Cdk4|12567|cyclin-dependent kinase 4
mm9_v1_chrX_-_154006916_154006936	1.95233	CDX1,2,4.p2	AK161451|Yy2|100073351|Yy2 transcription factor	NM_001098723|Yy2|100073351|Yy2 transcription factor	AK077220|Mbtps2|270669|membrane-bound transcription factor peptidase, site 2
mm9_v1_chr3_+_20008792_20008792	1.94697	CDX1,2,4.p2	BC039796|Hltf|20585|helicase-like transcription factor
mm9_v1_chr5_-_124315478_124315522	1.93713	CDX1,2,4.p2	BC120715|Niacr1|80885|niacin receptor 1	BC125296|Niacr1|80885|niacin receptor 1	AJ300198|Niacr1|80885|niacin receptor 1	AK150795|Niacr1|80885|niacin receptor 1	AK169956|Niacr1|80885|niacin receptor 1	NM_030701|Niacr1|80885|niacin receptor 1
mm9_v1_chr17_-_34133397_34133417	1.93203	CDX1,2,4.p2	M13197|H2-K1|14972|histocompatibility 2, K1, K region	M23901|H2-K1|14972|histocompatibility 2, K1, K region
mm9_v1_chr6_-_40985505_40985509	1.92912	CDX1,2,4.p2	AK007773|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	AK008695|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	AK008460|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	NM_023333|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	BC061093|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene
mm9_v1_chr2_-_69044179_69044244	1.92598	CDX1,2,4.p2	AK011893|Spc25|66442|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC027121|Spc25|66442|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC033605|Spc25|66442|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK003408|Spc25|66442|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK011241|Spc25|66442|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK146727|Spc25|66442|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	NM_025565|Spc25|66442|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK151554|Spc25|66442|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm9_v1_chr10_-_83989221_83989289	1.92208	CDX1,2,4.p2	AK205593|Ckap4|216197|cytoskeleton-associated protein 4	AK212843|Ckap4|216197|cytoskeleton-associated protein 4	AK217343|Ckap4|216197|cytoskeleton-associated protein 4
mm9_v1_chr8_+_3665753_3665761	1.92088	CDX1,2,4.p2	AK007679|1810033B17Rik|69189|RIKEN cDNA 1810033B17 gene	AK087121|1810033B17Rik|69189|RIKEN cDNA 1810033B17 gene	AK036449|1810033B17Rik|69189|RIKEN cDNA 1810033B17 gene	NM_026985|1810033B17Rik|69189|RIKEN cDNA 1810033B17 gene
mm9_v1_chr7_-_22949053_22949053	1.91855	CDX1,2,4.p2	NM_001166723|Vmn1r94|620537|vomeronasal 1 receptor 94	NM_001166749|Vmn1r142|667464|vomeronasal 1 receptor 142
mm9_v1_chr17_+_48403658_48403738	1.91618	CDX1,2,4.p2	AK156085|Treml4|224840|triggering receptor expressed on myeloid cells-like 4	AK077228|Treml4|224840|triggering receptor expressed on myeloid cells-like 4	NM_001033922|Treml4|224840|triggering receptor expressed on myeloid cells-like 4	NM_001163795|Treml4|224840|triggering receptor expressed on myeloid cells-like 4	NM_001163796|Treml4|224840|triggering receptor expressed on myeloid cells-like 4	NM_172623|Treml4|224840|triggering receptor expressed on myeloid cells-like 4	BC117091|Treml4|224840|triggering receptor expressed on myeloid cells-like 4	BC137666|Treml4|224840|triggering receptor expressed on myeloid cells-like 4	AY465530|Treml4|224840|triggering receptor expressed on myeloid cells-like 4	AY465531|Treml4|224840|triggering receptor expressed on myeloid cells-like 4	AY465532|Treml4|224840|triggering receptor expressed on myeloid cells-like 4	DQ186654|Treml4|224840|triggering receptor expressed on myeloid cells-like 4	DQ186655|Treml4|224840|triggering receptor expressed on myeloid cells-like 4	AY557629|Treml4|224840|triggering receptor expressed on myeloid cells-like 4	DQ087185|Treml4|224840|triggering receptor expressed on myeloid cells-like 4	DQ087186|Treml4|224840|triggering receptor expressed on myeloid cells-like 4
mm9_v1_chr6_+_123212124_123212192	1.91342	CDX1,2,4.p2	NM_001163161|Clec4d|17474|C-type lectin domain family 4, member d	NM_010819|Clec4d|17474|C-type lectin domain family 4, member d	AK155919|Clec4d|17474|C-type lectin domain family 4, member d	AK089500|Clec4d|17474|C-type lectin domain family 4, member d	AK171409|Clec4d|17474|C-type lectin domain family 4, member d	AK170692|Clec4d|17474|C-type lectin domain family 4, member d	AF061272|Clec4d|17474|C-type lectin domain family 4, member d
mm9_v1_chr10_-_12912880_12912990	1.90352	CDX1,2,4.p2	AK011491|Ltv1|353258|LTV1 homolog (S. cerevisiae)	BC069962|Ltv1|353258|LTV1 homolog (S. cerevisiae)	BC067062|Ltv1|353258|LTV1 homolog (S. cerevisiae)	NM_181470|Ltv1|353258|LTV1 homolog (S. cerevisiae)
mm9_v1_chr6_+_51473868_51474033	1.89992	CDX1,2,4.p2	AK150704|Snx10|71982|sorting nexin 10	AK150999|Snx10|71982|sorting nexin 10	AK151320|Snx10|71982|sorting nexin 10	AK151520|Snx10|71982|sorting nexin 10	AK153127|Snx10|71982|sorting nexin 10	NM_001127349|Snx10|71982|sorting nexin 10	AK152949|Snx10|71982|sorting nexin 10	AK152825|Snx10|71982|sorting nexin 10	AK153356|Snx10|71982|sorting nexin 10	AK010399|Snx10|71982|sorting nexin 10	AK169110|Snx10|71982|sorting nexin 10	BC010334|Snx10|71982|sorting nexin 10	AK042505|Snx10|71982|sorting nexin 10	AK150878|Snx10|71982|sorting nexin 10
mm9_v1_chr14_+_52473672_52473672	1.88399	CDX1,2,4.p2	NM_017385|Ear7|53873|eosinophil-associated, ribonuclease A family, member 7
mm9_v1_chr14_+_27473359_27473404	1.88066	CDX1,2,4.p2	AK206427|Arf4|11843|ADP-ribosylation factor 4	AK210624|Arf4|11843|ADP-ribosylation factor 4
mm9_v1_chr9_-_78290953_78291043	1.87745	CDX1,2,4.p2	BC052196|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	NM_173386|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK078662|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK054330|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK145268|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK154165|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	BC145651|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	BC145653|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK030292|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene
mm9_v1_chr1_+_61034757_61034802	1.86938	CDX1,2,4.p2	NM_017480|Icos|54167|inducible T-cell co-stimulator	AK030827|Icos|54167|inducible T-cell co-stimulator	AJ250559|Icos|54167|inducible T-cell co-stimulator	BC034852|Icos|54167|inducible T-cell co-stimulator	AB023132|Icos|54167|inducible T-cell co-stimulator	AF257230|Icos|54167|inducible T-cell co-stimulator	AF216748|Icos|54167|inducible T-cell co-stimulator
mm9_v1_chr8_-_47209499_47209499	1.86889	CDX1,2,4.p2	NM_207213|Snx25|102141|sorting nexin 25
mm9_v1_chr5_+_88916999_88917087	1.86774	CDX1,2,4.p2	NM_017468|Enam|13801|enamelin	U82698|Enam|13801|enamelin	BC115848|Enam|13801|enamelin
mm9_v1_chr2_-_129094163_129094313	1.85747	CDX1,2,4.p2	AK008278|Ckap2l|70466|cytoskeleton associated protein 2-like
mm9_v1_chr2_-_7317824_7317824	1.85629	CDX1,2,4.p2	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr13_+_95335701_95335710	1.85097	CDX1,2,4.p2	
mm9_v1_chr14_-_48037874_48037887	1.84724	CDX1,2,4.p2	AK164575|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK036384|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK135820|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5
mm9_v1_chr18_+_31948788_31948829	1.84195	CDX1,2,4.p2	AK011600|Polr2d|69241|polymerase (RNA) II (DNA directed) polypeptide D	NM_027002|Polr2d|69241|polymerase (RNA) II (DNA directed) polypeptide D	AK009093|Polr2d|69241|polymerase (RNA) II (DNA directed) polypeptide D	BC004810|Polr2d|69241|polymerase (RNA) II (DNA directed) polypeptide D	NM_027101|Polr2d|69241|polymerase (RNA) II (DNA directed) polypeptide D
mm9_v1_chr6_-_122799694_122799778	1.84126	CDX1,2,4.p2	AK081010|C3ar1|12267|complement component 3a receptor 1
mm9_v1_chr15_+_77307476_77307476	1.82893	CDX1,2,4.p2	AK033521|Apol10a|245282|apolipoprotein L 10a	NM_177744|Apol10a|245282|apolipoprotein L 10a
mm9_v1_chr8_+_74120004_74120094	1.82725	CDX1,2,4.p2	
mm9_v1_chr5_-_122286849_122286903	1.82504	CDX1,2,4.p2	AK028796|Sh2b3|16923|SH2B adaptor protein 3
mm9_v1_chr8_-_126384108_126384108	1.82176	CDX1,2,4.p2	BC036300|1700054N08Rik|73420|RIKEN cDNA 1700054N08 gene	NM_028536|1700054N08Rik|73420|RIKEN cDNA 1700054N08 gene
mm9_v1_chr9_+_123715592_123715616	1.82	CDX1,2,4.p2	AF305709|Cxcr6|80901|chemokine (C-X-C motif) receptor 6	NM_030712|Cxcr6|80901|chemokine (C-X-C motif) receptor 6	AK153914|Cxcr6|80901|chemokine (C-X-C motif) receptor 6	AK052901|Cxcr6|80901|chemokine (C-X-C motif) receptor 6	AF301018|Cxcr6|80901|chemokine (C-X-C motif) receptor 6	AK137703|Cxcr6|80901|chemokine (C-X-C motif) receptor 6	BC096491|Cxcr6|80901|chemokine (C-X-C motif) receptor 6
mm9_v1_chr17_+_28667805_28667828	1.81778	CDX1,2,4.p2	AK015756|4930511I11Rik|67645|RIKEN cDNA 4930511I11 gene	NM_026290|4930511I11Rik|67645|RIKEN cDNA 4930511I11 gene	BC049559|4930511I11Rik|67645|RIKEN cDNA 4930511I11 gene	AK005672|4930511I11Rik|67645|RIKEN cDNA 4930511I11 gene	EU477370|4930511I11Rik|67645|RIKEN cDNA 4930511I11 gene
mm9_v1_chr11_-_86171026_86171057	1.81486	CDX1,2,4.p2	NM_001080931|Med13|327987|mediator complex subunit 13
mm9_v1_chr17_+_35978442_35978442	1.81345	CDX1,2,4.p2	NM_001010833|Mdc1|240087|mediator of DNA damage checkpoint 1
mm9_v1_chr13_+_51740600_51740724	1.81108	CDX1,2,4.p2	NM_025415|Cks2|66197|CDC28 protein kinase regulatory subunit 2	AK166688|Cks2|66197|CDC28 protein kinase regulatory subunit 2	AK002451|Cks2|66197|CDC28 protein kinase regulatory subunit 2	AK004163|Cks2|66197|CDC28 protein kinase regulatory subunit 2	BC022647|Cks2|66197|CDC28 protein kinase regulatory subunit 2	BC094919|Cks2|66197|CDC28 protein kinase regulatory subunit 2
mm9_v1_chr13_-_60998747_60998807	1.81026	CDX1,2,4.p2	AY034578|Ctla2b|13025|cytotoxic T lymphocyte-associated protein 2 beta	X15592|Ctla2b|13025|cytotoxic T lymphocyte-associated protein 2 beta	AK150917|Ctla2b|13025|cytotoxic T lymphocyte-associated protein 2 beta	NM_001145801|Ctla2b|13025|cytotoxic T lymphocyte-associated protein 2 beta	NM_007797|Ctla2b|13025|cytotoxic T lymphocyte-associated protein 2 beta
mm9_v1_chr11_+_51085400_51085500	1.80927	CDX1,2,4.p2	AF005423|Clk4|12750|CDC like kinase 4	AK161739|Clk4|12750|CDC like kinase 4
mm9_v1_chr3_+_127494295_127494302	1.8043	CDX1,2,4.p2	AK041891|Tifa|211550|TRAF-interacting protein with forkhead-associated domain
mm9_v1_chr5_-_121822213_121822316	1.80271	CDX1,2,4.p2	AK211451|Trafd1|231712|TRAF type zinc finger domain containing 1	AK212088|Trafd1|231712|TRAF type zinc finger domain containing 1
mm9_v1_chr11_+_102297838_102297879	1.80163	CDX1,2,4.p2	
mm9_v1_chr10_+_24589791_24589858	1.79788	CDX1,2,4.p2	NM_001166416|Med23|70208|mediator complex subunit 23	NM_027347|Med23|70208|mediator complex subunit 23	AK028545|Med23|70208|mediator complex subunit 23	AK042346|Med23|70208|mediator complex subunit 23	AF507918|Med23|70208|mediator complex subunit 23	BC050916|Med23|70208|mediator complex subunit 23	BC040398|Med23|70208|mediator complex subunit 23	AK129312|Med23|70208|mediator complex subunit 23
mm9_v1_chr6_+_120413200_120413305	1.79386	CDX1,2,4.p2	NM_008359|Il17ra|16172|interleukin 17 receptor A	AK036587|Il17ra|16172|interleukin 17 receptor A	AK080226|Il17ra|16172|interleukin 17 receptor A
mm9_v1_chr1_+_40082201_40082235	1.78865	CDX1,2,4.p2	AK020498|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4	AK167747|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4	AK004047|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chr9_-_21940154_21940189	1.78775	CDX1,2,4.p2	AK010865|Acp5|11433|acid phosphatase 5, tartrate resistant	AK011915|Acp5|11433|acid phosphatase 5, tartrate resistant	NM_001102405|Acp5|11433|acid phosphatase 5, tartrate resistant
mm9_v1_chr3_+_87180308_87180388	1.78016	CDX1,2,4.p2	AK041750|Fcrl1|229499|Fc receptor-like 1	NM_001136236|Fcrl1|229499|Fc receptor-like 1	NM_153090|Fcrl1|229499|Fc receptor-like 1	NM_178165|Fcrl1|229499|Fc receptor-like 1	AK038494|Fcrl1|229499|Fc receptor-like 1	AK156528|Fcrl1|229499|Fc receptor-like 1	AK156985|Fcrl1|229499|Fc receptor-like 1	AY506554|Fcrl1|229499|Fc receptor-like 1	AY506555|Fcrl1|229499|Fc receptor-like 1	AF329485|Fcrl1|229499|Fc receptor-like 1	BC055830|Fcrl1|229499|Fc receptor-like 1	AY158088|Fcrl1|229499|Fc receptor-like 1	AY158089|Fcrl1|229499|Fc receptor-like 1
mm9_v1_chr11_-_86517662_86517713	1.77825	CDX1,2,4.p2	AK167527|Cltc|67300|clathrin, heavy polypeptide (Hc)
mm9_v1_chr11_-_114863193_114863193	1.77495	CDX1,2,4.p2	AF251705|AF251705|140497|cDNA sequence AF251705	AY048685|AF251705|140497|cDNA sequence AF251705	NM_134158|AF251705|140497|cDNA sequence AF251705
mm9_v1_chr9_+_114239252_114239252	1.77329	CDX1,2,4.p2	BC120720|Bcl2a1c|12046|B-cell leukemia/lymphoma 2 related protein A1c	BC132545|Bcl2a1c|12046|B-cell leukemia/lymphoma 2 related protein A1c	NM_007535|Bcl2a1c|12046|B-cell leukemia/lymphoma 2 related protein A1c
mm9_v1_chr4_-_136438225_136438228	1.77205	CDX1,2,4.p2	X16874|C1qb|12260|complement component 1, q subcomponent, beta polypeptide
mm9_v1_chr7_+_20686506_20686506	1.76645	CDX1,2,4.p2	NM_001166736|Vmn1r91|667067|vomeronasal 1 receptor 91
mm9_v1_chrX_+_34335642_34335646	1.7659	CDX1,2,4.p2	U27316|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK003467|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	NM_007451|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr17_+_29629987_29630031	1.76344	CDX1,2,4.p2	AK154127|Pim1|18712|proviral integration site 1
mm9_v1_chr9_-_21564723_21564737	1.75954	CDX1,2,4.p2	AK031680|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK075950|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC116238|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC116239|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	NM_026282|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC086683|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC056965|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC098472|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm9_v1_chr4_-_134323845_134323948	1.75785	CDX1,2,4.p2	BC021467|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK159800|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	BC066808|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	BC067411|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK167290|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK029008|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK148340|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	NM_145554|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1
mm9_v1_chr4_+_108132023_108132030	1.75764	CDX1,2,4.p2	AK041821|Zcchc11|230594|zinc finger, CCHC domain containing 11	NM_175472|Zcchc11|230594|zinc finger, CCHC domain containing 11
mm9_v1_chr7_-_25545329_25545329	1.75738	CDX1,2,4.p2	BC027283|Cd177|68891|CD177 antigen	NM_026862|Cd177|68891|CD177 antigen
mm9_v1_chr1_+_9838330_9838477	1.74647	CDX1,2,4.p2	AK030314|Sgk3|170755|serum/glucocorticoid regulated kinase 3	NM_001037759|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK166531|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK146561|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK031328|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171959|Sgk3|170755|serum/glucocorticoid regulated kinase 3
mm9_v1_chr1_-_177909236_177909246	1.74576	CDX1,2,4.p2	BC132651|B020018G12Rik|545388|RIKEN cDNA B020018G12 gene	BC132653|B020018G12Rik|545388|RIKEN cDNA B020018G12 gene	AK139805|B020018G12Rik|545388|RIKEN cDNA B020018G12 gene	NM_001039518|B020018G12Rik|545388|RIKEN cDNA B020018G12 gene
mm9_v1_chr11_+_102297953_102298100	1.74485	CDX1,2,4.p2	
mm9_v1_chr9_-_43921555_43921605	1.74402	CDX1,2,4.p2	BC111036|Rnf26|213211|ring finger protein 26	AK157821|Rnf26|213211|ring finger protein 26	AK085078|Rnf26|213211|ring finger protein 26	AK033164|Rnf26|213211|ring finger protein 26
mm9_v1_chr17_+_45692647_45692701	1.73784	CDX1,2,4.p2	AK008843|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK151450|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK151692|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK011965|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	BC030923|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	NM_008690|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK153248|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK088585|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon
mm9_v1_chr14_-_71029960_71029960	1.7371	CDX1,2,4.p2	BC016897|Epb4.9|13829|erythrocyte protein band 4.9	NM_013514|Epb4.9|13829|erythrocyte protein band 4.9
mm9_v1_chr9_+_120058842_120058868	1.73511	CDX1,2,4.p2	AK013799|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK019323|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK028057|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK083103|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK140055|Mobp|17433|myelin-associated oligodendrocytic basic protein	BC048492|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_001039364|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_001039365|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_008614|Mobp|17433|myelin-associated oligodendrocytic basic protein
mm9_v1_chr14_+_47993487_47993627	1.72848	CDX1,2,4.p2	X16074|Lgals3|16854|lectin, galactose binding, soluble 3	NM_001145953|Lgals3|16854|lectin, galactose binding, soluble 3	NM_010705|Lgals3|16854|lectin, galactose binding, soluble 3	AK149783|Lgals3|16854|lectin, galactose binding, soluble 3	AK008593|Lgals3|16854|lectin, galactose binding, soluble 3	AK155244|Lgals3|16854|lectin, galactose binding, soluble 3	AK089249|Lgals3|16854|lectin, galactose binding, soluble 3	AK155484|Lgals3|16854|lectin, galactose binding, soluble 3	AK159536|Lgals3|16854|lectin, galactose binding, soluble 3	BC132328|Lgals3|16854|lectin, galactose binding, soluble 3	BC138790|Lgals3|16854|lectin, galactose binding, soluble 3	BC145419|Lgals3|16854|lectin, galactose binding, soluble 3	X16834|Lgals3|16854|lectin, galactose binding, soluble 3
mm9_v1_chr15_-_82075137_82075176	1.72657	CDX1,2,4.p2	AY243536|Cenpm|66570|centromere protein M	AY243537|Cenpm|66570|centromere protein M	AK011191|Cenpm|66570|centromere protein M	BC009160|Cenpm|66570|centromere protein M	AK168203|Cenpm|66570|centromere protein M	AK011227|Cenpm|66570|centromere protein M	AK011793|Cenpm|66570|centromere protein M	AK011755|Cenpm|66570|centromere protein M	AK010885|Cenpm|66570|centromere protein M	AK017679|Cenpm|66570|centromere protein M	AK011464|Cenpm|66570|centromere protein M	NM_025639|Cenpm|66570|centromere protein M	NM_178269|Cenpm|66570|centromere protein M
mm9_v1_chr4_+_148478290_148478305	1.72628	CDX1,2,4.p2	AK079634|Dffa|13347|DNA fragmentation factor, alpha subunit	BC058213|Dffa|13347|DNA fragmentation factor, alpha subunit
mm9_v1_chr3_+_89006824_89006905	1.72011	CDX1,2,4.p2	AK082767|Gba|14466|glucosidase, beta, acid	NM_001077411|Gba|14466|glucosidase, beta, acid	AK201806|Gba|14466|glucosidase, beta, acid	AK166198|Gba|14466|glucosidase, beta, acid	BC006663|Gba|14466|glucosidase, beta, acid	NM_008094|Gba|14466|glucosidase, beta, acid	AK152745|Gba|14466|glucosidase, beta, acid
mm9_v1_chr2_-_132403964_132404008	1.71443	CDX1,2,4.p2	AK031658|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	NM_001042671|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	NM_001042672|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	NM_028802|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
mm9_v1_chr15_-_78685925_78685959	1.70639	CDX1,2,4.p2	BC027504|Lgals2|107753|lectin, galactose-binding, soluble 2	AK007364|Lgals2|107753|lectin, galactose-binding, soluble 2	AK008607|Lgals2|107753|lectin, galactose-binding, soluble 2	AK008423|Lgals2|107753|lectin, galactose-binding, soluble 2	AK008636|Lgals2|107753|lectin, galactose-binding, soluble 2	AK008648|Lgals2|107753|lectin, galactose-binding, soluble 2	NM_025622|Lgals2|107753|lectin, galactose-binding, soluble 2
mm9_v1_chr2_-_25221101_25221190	1.70582	CDX1,2,4.p2	BC043307|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK077912|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK151942|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	NM_001033293|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK149178|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK168977|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK159787|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK077550|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	BC130030|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
mm9_v1_chr2_+_91386476_91386497	1.70344	CDX1,2,4.p2	BC017140|Ckap5|75786|cytoskeleton associated protein 5	BC089032|Ckap5|75786|cytoskeleton associated protein 5	NM_001165989|Ckap5|75786|cytoskeleton associated protein 5	NM_029437|Ckap5|75786|cytoskeleton associated protein 5	BC138334|Ckap5|75786|cytoskeleton associated protein 5	BC096422|Ckap5|75786|cytoskeleton associated protein 5
mm9_v1_chr8_-_22814073_22814118	1.6998	CDX1,2,4.p2	AY761184|AY761184|382000|cDNA sequence AY761184	AK008498|AY761184|382000|cDNA sequence AY761184	NM_001007582|AY761184|382000|cDNA sequence AY761184
mm9_v1_chr1_+_58042183_58042183	1.69685	CDX1,2,4.p2	NM_001177867|Sgol2|68549|shugoshin-like 2 (S. pombe)
mm9_v1_chr4_+_128688217_128688363	1.69338	CDX1,2,4.p2	
mm9_v1_chr16_+_59471600_59471691	1.69249	CDX1,2,4.p2	NM_025910|Mina|67014|myc induced nuclear antigen	AK007810|Mina|67014|myc induced nuclear antigen	AK032595|Mina|67014|myc induced nuclear antigen	AK013451|Mina|67014|myc induced nuclear antigen	AK014426|Mina|67014|myc induced nuclear antigen	AK019117|Mina|67014|myc induced nuclear antigen	AK031671|Mina|67014|myc induced nuclear antigen	BC025109|Mina|67014|myc induced nuclear antigen	BC058242|Mina|67014|myc induced nuclear antigen
mm9_v1_chr6_-_137519272_137519292	1.69073	CDX1,2,4.p2	AK155022|Eps8|13860|epidermal growth factor receptor pathway substrate 8
mm9_v1_chr8_-_22466673_22466698	1.68731	CDX1,2,4.p2	BC117042|Defa-rs1|13218|defensin, alpha, related sequence 1	BC117044|Defa-rs1|13218|defensin, alpha, related sequence 1	M33226|Defa-rs1|13218|defensin, alpha, related sequence 1	BC145556|Defa-rs1|13218|defensin, alpha, related sequence 1	BC171966|Defa-rs1|13218|defensin, alpha, related sequence 1	AK008584|Defa-rs1|13218|defensin, alpha, related sequence 1	NM_007844|Defa-rs1|13218|defensin, alpha, related sequence 1
mm9_v1_chr19_+_29441927_29441979	1.68529	CDX1,2,4.p2	NM_021893|Cd274|60533|CD274 antigen	BC066841|Cd274|60533|CD274 antigen	AK080003|Cd274|60533|CD274 antigen	AK154403|Cd274|60533|CD274 antigen	AK089307|Cd274|60533|CD274 antigen
mm9_v1_chr2_-_25483461_25483497	1.68496	CDX1,2,4.p2	AK159651|Fcna|14133|ficolin A	AK133539|Fcna|14133|ficolin A	NM_007995|Fcna|14133|ficolin A
mm9_v1_chr1_+_182685912_182685968	1.68321	CDX1,2,4.p2	AK017899|5830405M20Rik|74749|RIKEN cDNA 5830405M20 gene
mm9_v1_chr16_-_23127779_23127814	1.67567	CDX1,2,4.p2	AK146954|Rfc4|106344|replication factor C (activator 1) 4	AK147030|Rfc4|106344|replication factor C (activator 1) 4	BC003335|Rfc4|106344|replication factor C (activator 1) 4	NM_145480|Rfc4|106344|replication factor C (activator 1) 4
mm9_v1_chr2_-_42509117_42509117	1.66548	CDX1,2,4.p2	AF270884|Lrp1b|94217|low density lipoprotein-related protein 1B (deleted in tumors)	NM_053011|Lrp1b|94217|low density lipoprotein-related protein 1B (deleted in tumors)
mm9_v1_chr11_+_75578548_75578573	1.6598	CDX1,2,4.p2	AK204716|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK199717|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr6_-_122552269_122552466	1.65807	CDX1,2,4.p2	AK146427|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	AK151799|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	AK166412|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	AK165209|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	BC003792|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	NM_001134391|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	NM_031159|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	U22262|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	U22263|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
mm9_v1_chr11_-_94154354_94154488	1.65373	CDX1,2,4.p2	BC055921|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)
mm9_v1_chr19_-_34240392_34240542	1.65191	CDX1,2,4.p2	BC003460|Ankrd22|52024|ankyrin repeat domain 22	AK017408|Ankrd22|52024|ankyrin repeat domain 22	AK037242|Ankrd22|52024|ankyrin repeat domain 22	AK017360|Ankrd22|52024|ankyrin repeat domain 22	NM_024204|Ankrd22|52024|ankyrin repeat domain 22	AK012869|Ankrd22|52024|ankyrin repeat domain 22
mm9_v1_chr1_-_179178874_179178897	1.65077	CDX1,2,4.p2	AF124142|Akt3|23797|thymoma viral proto-oncogene 3	BC066861|Akt3|23797|thymoma viral proto-oncogene 3	NM_011785|Akt3|23797|thymoma viral proto-oncogene 3
mm9_v1_chr9_+_92204214_92204235	1.64266	CDX1,2,4.p2	AK132905|1700057G04Rik|78459|RIKEN cDNA 1700057G04 gene	NM_001033184|1700057G04Rik|78459|RIKEN cDNA 1700057G04 gene	AK018865|1700057G04Rik|78459|RIKEN cDNA 1700057G04 gene
mm9_v1_chr3_+_89006938_89006939	1.64063	CDX1,2,4.p2	M24119|Gba|14466|glucosidase, beta, acid
mm9_v1_chr5_+_104754347_104754401	1.62889	CDX1,2,4.p2	AF298661|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)	NM_053172|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)	AK158231|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)	AK158330|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)	AF314964|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)	BC119162|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)
mm9_v1_chr11_-_41814008_41814185	1.61334	CDX1,2,4.p2	M86572|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	BC031762|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	M62374|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	NM_008073|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK034338|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm9_v1_chr7_-_108993807_108993846	1.61315	CDX1,2,4.p2	BC022108|Folr2|14276|folate receptor 2 (fetal)
mm9_v1_chr11_+_61466797_61466853	1.61071	CDX1,2,4.p2	AK018457|Grap|71520|GRB2-related adaptor protein	NM_027817|Grap|71520|GRB2-related adaptor protein	BC120674|Grap|71520|GRB2-related adaptor protein	BC120676|Grap|71520|GRB2-related adaptor protein
mm9_v1_chr6_+_48689045_48689097	1.61018	CDX1,2,4.p2	NM_008376|Gimap1|16205|GTPase, IMAP family member 1	NM_175860|Gimap1|16205|GTPase, IMAP family member 1	AK156732|Gimap1|16205|GTPase, IMAP family member 1	BC132601|Gimap1|16205|GTPase, IMAP family member 1	BC132603|Gimap1|16205|GTPase, IMAP family member 1	AK169133|Gimap1|16205|GTPase, IMAP family member 1
mm9_v1_chr4_-_19497166_19497254	1.60433	CDX1,2,4.p2	BC036983|Cpne3|70568|copine III	AK220348|Cpne3|70568|copine III	AK146324|Cpne3|70568|copine III	AK017357|Cpne3|70568|copine III	AK036664|Cpne3|70568|copine III	NM_027769|Cpne3|70568|copine III	AK017651|Cpne3|70568|copine III
mm9_v1_chr19_-_60302398_60302548	1.60385	CDX1,2,4.p2	BC061459|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed	AK162079|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed
mm9_v1_chr15_+_4325490_4325644	1.60187	CDX1,2,4.p2	AK038575|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	NM_177355|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	BC137637|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	BC137639|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	AK044972|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3
mm9_v1_chr9_-_64062342_64062398	1.60122	CDX1,2,4.p2	AK165664|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr2_+_155782193_155782305	1.60014	CDX1,2,4.p2	AK161443|Cep250|16328|centrosomal protein 250	AK145562|Cep250|16328|centrosomal protein 250	NM_001129999|Cep250|16328|centrosomal protein 250	NM_001130000|Cep250|16328|centrosomal protein 250	NM_008383|Cep250|16328|centrosomal protein 250	NM_177217|Cep250|16328|centrosomal protein 250	BC068153|Cep250|16328|centrosomal protein 250
mm9_v1_chr2_-_51790406_51790534	1.59602	CDX1,2,4.p2	BC003333|Rbm43|71684|RNA binding motif protein 43	NM_001141981|Rbm43|71684|RNA binding motif protein 43	NM_030243|Rbm43|71684|RNA binding motif protein 43
mm9_v1_chr2_-_167515255_167515321	1.58299	CDX1,2,4.p2	AK080983|Tmem189|407243|transmembrane protein 189
mm9_v1_chr3_+_90407688_90407708	1.58179	CDX1,2,4.p2	AK160522|S100a4|20198|S100 calcium binding protein A4	D00208|S100a4|20198|S100 calcium binding protein A4	NM_011311|S100a4|20198|S100 calcium binding protein A4	AK003065|S100a4|20198|S100 calcium binding protein A4
mm9_v1_chr3_-_14808320_14808364	1.57813	CDX1,2,4.p2	BC132432|Car1|12346|carbonic anhydrase 1	BC132434|Car1|12346|carbonic anhydrase 1	M32452|Car1|12346|carbonic anhydrase 1	AK172076|Car1|12346|carbonic anhydrase 1	AK003066|Car1|12346|carbonic anhydrase 1	AK146372|Car1|12346|carbonic anhydrase 1	AK167969|Car1|12346|carbonic anhydrase 1	NM_009799|Car1|12346|carbonic anhydrase 1
mm9_v1_chr9_+_64809499_64809621	1.57804	CDX1,2,4.p2	AK168222|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene
mm9_v1_chr10_+_80720191_80720236	1.57619	CDX1,2,4.p2	AK018182|Matk|17179|megakaryocyte-associated tyrosine kinase	AK013606|Matk|17179|megakaryocyte-associated tyrosine kinase	S77473|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr5_+_97520188_97520241	1.5754	CDX1,2,4.p2	AK132786|Bmp2k|140780|BMP2 inducible kinase
mm9_v1_chr10_+_127707555_127707756	1.56768	CDX1,2,4.p2	AK149924|Stat2|20847|signal transducer and activator of transcription 2	AK150070|Stat2|20847|signal transducer and activator of transcription 2	AK149838|Stat2|20847|signal transducer and activator of transcription 2	AF187231|Stat2|20847|signal transducer and activator of transcription 2	AF206162|Stat2|20847|signal transducer and activator of transcription 2	NM_019963|Stat2|20847|signal transducer and activator of transcription 2	AF088862|Stat2|20847|signal transducer and activator of transcription 2
mm9_v1_chr11_+_78141923_78141987	1.5664	CDX1,2,4.p2	BC058979|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	NM_201406|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK166408|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK033331|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK043232|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK053771|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK039604|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK045759|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK142871|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK158128|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK169633|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK153300|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK151858|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK152229|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S
mm9_v1_chr6_-_129573858_129573881	1.56349	CDX1,2,4.p2	AF030313|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1	NM_001083322|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1	AK170499|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1
mm9_v1_chr6_-_54922563_54922606	1.56032	CDX1,2,4.p2	NM_172729|Nod1|107607|nucleotide-binding oligomerization domain containing 1	AK137585|Nod1|107607|nucleotide-binding oligomerization domain containing 1
mm9_v1_chr3_+_89904315_89904415	1.55685	CDX1,2,4.p2	
mm9_v1_chr15_-_82169203_82169306	1.55523	CDX1,2,4.p2	AF079458|Naga|17939|N-acetyl galactosaminidase, alpha	AK133576|Naga|17939|N-acetyl galactosaminidase, alpha	BC021631|Naga|17939|N-acetyl galactosaminidase, alpha	AK077116|Naga|17939|N-acetyl galactosaminidase, alpha	AK153002|Naga|17939|N-acetyl galactosaminidase, alpha	NM_008669|Naga|17939|N-acetyl galactosaminidase, alpha
mm9_v1_chr4_-_120861138_120861138	1.55248	CDX1,2,4.p2	NM_001081013|Rlf|109263|rearranged L-myc fusion sequence
mm9_v1_chr12_+_75028976_75029036	1.54066	CDX1,2,4.p2	AK076395|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr9_+_44142772_44142803	1.53367	CDX1,2,4.p2	AK088040|H2afx|15270|H2A histone family, member X	AK008124|H2afx|15270|H2A histone family, member X	X58069|H2afx|15270|H2A histone family, member X	BC010336|H2afx|15270|H2A histone family, member X	NM_010436|H2afx|15270|H2A histone family, member X	BC005468|H2afx|15270|H2A histone family, member X
mm9_v1_chr1_-_180267913_180267920	1.53345	CDX1,2,4.p2	AK165844|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	NM_016805|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK089058|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK145682|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK159614|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK167200|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK145499|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK162264|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr7_-_22104879_22104879	1.52576	CDX1,2,4.p2	NM_001166726|Vmn1r127|621561|vomeronasal 1 receptor 127
mm9_v1_chr5_-_17341713_17341713	1.52527	CDX1,2,4.p2	NM_001159555|Cd36|12491|CD36 antigen	NM_007643|Cd36|12491|CD36 antigen
mm9_v1_chr2_-_119916315_119916503	1.52372	CDX1,2,4.p2	AK008769|Ehd4|98878|EH-domain containing 4	AK076544|Ehd4|98878|EH-domain containing 4
mm9_v1_chr1_-_175872522_175872802	1.52007	CDX1,2,4.p2	AF022371|Ifi203|15950|interferon activated gene 203	BC008167|Ifi203|15950|interferon activated gene 203	AK164695|Ifi203|15950|interferon activated gene 203	AK161531|Ifi203|15950|interferon activated gene 203	NM_008328|Ifi203|15950|interferon activated gene 203	AK041232|Ifi203|15950|interferon activated gene 203	AK169754|Ifi203|15950|interferon activated gene 203	AK137616|Ifi203|15950|interferon activated gene 203	AK040214|Ifi203|15950|interferon activated gene 203	NM_001045481|Ifi203|15950|interferon activated gene 203	AK144663|Ifi203|15950|interferon activated gene 203
mm9_v1_chr6_+_17586971_17587041	1.51986	CDX1,2,4.p2	U16741|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AK150751|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AK031551|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2
mm9_v1_chr2_-_25483295_25483445	1.51985	CDX1,2,4.p2	AB222271|Fcna|14133|ficolin A	CT010383|Fcna|14133|ficolin A	AB007813|Fcna|14133|ficolin A	BC019180|Fcna|14133|ficolin A	AK138752|Fcna|14133|ficolin A
mm9_v1_chr14_-_25306175_25306259	1.51464	CDX1,2,4.p2	BC151168|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC151002|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC151169|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	AK143315|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC053071|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A
mm9_v1_chr3_+_145813230_145813260	1.51026	CDX1,2,4.p2	AK019454|Mcoln2|68279|mucolipin 2	BC029847|Mcoln2|68279|mucolipin 2
mm9_v1_chr14_+_31528034_31528081	1.51025	CDX1,2,4.p2	NM_019460|Sfmbt1|54650|Scm-like with four mbt domains 1	BC066188|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr5_+_119214935_119215085	1.5019	CDX1,2,4.p2	AK083611|Med13l|76199|mediator complex subunit 13-like
mm9_v1_chr13_-_19487596_19487657	1.49929	CDX1,2,4.p2	AK018331|Stard3nl|76205|STARD3 N-terminal like	AK152378|Stard3nl|76205|STARD3 N-terminal like	BC003334|Stard3nl|76205|STARD3 N-terminal like	NM_024270|Stard3nl|76205|STARD3 N-terminal like
mm9_v1_chr10_+_87553816_87553819	1.49891	CDX1,2,4.p2	AK138363|Pmch|110312|pro-melanin-concentrating hormone	BC048534|Pmch|110312|pro-melanin-concentrating hormone	NM_029971|Pmch|110312|pro-melanin-concentrating hormone	AK020723|Pmch|110312|pro-melanin-concentrating hormone
mm9_v1_chr8_-_108462291_108462291	1.49877	CDX1,2,4.p2	NM_013640|Psmb10|19171|proteasome (prosome, macropain) subunit, beta type 10
mm9_v1_chr7_-_97103461_97103540	1.49743	CDX1,2,4.p2	
mm9_v1_chr2_+_25203630_25203665	1.49563	CDX1,2,4.p2	BC025500|Man1b1|227619|mannosidase, alpha, class 1B, member 1
mm9_v1_chr2_+_87673197_87673197	1.49462	CDX1,2,4.p2	NM_001011519|Olfr1148|258220|olfactory receptor 1148
mm9_v1_chr18_+_69843588_69843609	1.49408	CDX1,2,4.p2	AK017365|Tcf4|21413|transcription factor 4
mm9_v1_chr6_-_102414660_102414660	1.48868	CDX1,2,4.p2	NM_008779|Cntn3|18488|contactin 3
mm9_v1_chr1_-_20793592_20793721	1.48564	CDX1,2,4.p2	AK219838|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)
mm9_v1_chr5_+_93602126_93602279	1.48226	CDX1,2,4.p2	AK018083|Sept11|52398|septin 11	AK075989|Sept11|52398|septin 11
mm9_v1_chr18_+_69843730_69844096	1.48098	CDX1,2,4.p2	AK021032|Tcf4|21413|transcription factor 4	AK047926|Tcf4|21413|transcription factor 4	AK045400|Tcf4|21413|transcription factor 4	AK083152|Tcf4|21413|transcription factor 4	AK039181|Tcf4|21413|transcription factor 4	AK040346|Tcf4|21413|transcription factor 4	AK032345|Tcf4|21413|transcription factor 4
mm9_v1_chr10_-_127935725_127935761	1.47858	CDX1,2,4.p2	BC037527|Myl6b|216459|myosin, light polypeptide 6B	NM_172259|Myl6b|216459|myosin, light polypeptide 6B
mm9_v1_chr15_+_65703468_65703625	1.47792	CDX1,2,4.p2	AK039483|Efr3a|76740|EFR3 homolog A (S. cerevisiae)
mm9_v1_chr4_-_21694324_21694364	1.4712	CDX1,2,4.p2	AK154853|2610029I01Rik|77032|RIKEN cDNA 2610029I01 gene	NM_029840|2610029I01Rik|77032|RIKEN cDNA 2610029I01 gene
mm9_v1_chr14_+_27813547_27813547	1.47094	CDX1,2,4.p2	NM_010420|Hesx1|15209|homeobox gene expressed in ES cells	U40720|Hesx1|15209|homeobox gene expressed in ES cells
mm9_v1_chr7_-_15078274_15078316	1.46599	CDX1,2,4.p2	NM_001184981|Sult2a7|638251|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 7
mm9_v1_chr19_+_9022763_9022826	1.4659	CDX1,2,4.p2	AK003701|Mta2|23942|metastasis-associated gene family, member 2	AK186547|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chrX_+_68463941_68463941	1.46427	CDX1,2,4.p2	AK016445|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164190|Mtm1|17772|X-linked myotubular myopathy gene 1
mm9_v1_chr14_+_33647147_33647147	1.46384	CDX1,2,4.p2	NM_001164485|Fam170b|105511|family with sequence similarity 170, member B
mm9_v1_chr16_-_38445988_38446143	1.46047	CDX1,2,4.p2	AK003751|Adprh|11544|ADP-ribosylarginine hydrolase
mm9_v1_chr4_-_136913576_136913662	1.45792	CDX1,2,4.p2	U37720|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK167195|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	BC064792|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK167400|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168013|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168076|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168089|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168276|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK169232|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK144216|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK167609|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK003098|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK075567|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK145659|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK154870|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK166281|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK051543|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK151726|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168820|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK150563|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168503|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK169122|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK169805|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK151087|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK153564|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168758|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK159470|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	NM_009861|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)
mm9_v1_chr16_+_91373008_91373145	1.45721	CDX1,2,4.p2	NM_001110498|Ifnar2|15976|interferon (alpha and beta) receptor 2	NM_010509|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK139169|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK010952|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK003185|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK150386|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK152878|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK153317|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK151474|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK151777|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK151493|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK150597|Ifnar2|15976|interferon (alpha and beta) receptor 2	Y09864|Ifnar2|15976|interferon (alpha and beta) receptor 2	Y09865|Ifnar2|15976|interferon (alpha and beta) receptor 2
mm9_v1_chr14_-_111154292_111154370	1.45315	CDX1,2,4.p2	AK029275|Slitrk6|239250|SLIT and NTRK-like family, member 6	AK044796|Slitrk6|239250|SLIT and NTRK-like family, member 6	NM_175499|Slitrk6|239250|SLIT and NTRK-like family, member 6
mm9_v1_chrX_+_97710893_97711108	1.44874	CDX1,2,4.p2	AK218313|Igbp1|18518|immunoglobulin (CD79A) binding protein 1	AK210875|Igbp1|18518|immunoglobulin (CD79A) binding protein 1
mm9_v1_chr1_-_88253690_88253764	1.44758	CDX1,2,4.p2	AK050958|Ncl|17975|nucleolin
mm9_v1_chr10_+_14480024_14480094	1.44556	CDX1,2,4.p2	BC144884|Nmbr|18101|neuromedin B receptor	BC144885|Nmbr|18101|neuromedin B receptor	BC119237|Nmbr|18101|neuromedin B receptor	NM_008703|Nmbr|18101|neuromedin B receptor
mm9_v1_chr3_+_84470230_84470299	1.44486	CDX1,2,4.p2	BC096432|Tmem154|320782|transmembrane protein 154	AK170385|Tmem154|320782|transmembrane protein 154	AK170665|Tmem154|320782|transmembrane protein 154	AK170626|Tmem154|320782|transmembrane protein 154
mm9_v1_chr12_-_32398730_32398790	1.43303	CDX1,2,4.p2	AK140577|Gpr22|73010|G protein-coupled receptor 22	AK034194|Gpr22|73010|G protein-coupled receptor 22	AK013755|Gpr22|73010|G protein-coupled receptor 22	AK048077|Gpr22|73010|G protein-coupled receptor 22	AK141569|Gpr22|73010|G protein-coupled receptor 22	BC089509|Gpr22|73010|G protein-coupled receptor 22	NM_175191|Gpr22|73010|G protein-coupled receptor 22
mm9_v1_chr13_-_77230519_77230547	1.43293	CDX1,2,4.p2	BC083095|Ankrd32|105377|ankyrin repeat domain 32
mm9_v1_chr1_+_9788206_9788302	1.43249	CDX1,2,4.p2	NM_133220|Sgk3|170755|serum/glucocorticoid regulated kinase 3	NM_177547|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK143836|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK031133|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151793|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171120|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171186|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151867|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171678|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK172323|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK028722|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK039247|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK039427|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151181|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK166414|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151996|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AF312007|Sgk3|170755|serum/glucocorticoid regulated kinase 3
mm9_v1_chr19_+_4154645_4154678	1.43043	CDX1,2,4.p2	NM_016933|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	AK088334|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	AK165203|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	BC013273|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	BC100560|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	D10105|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein
mm9_v1_chr7_+_51080819_51080819	1.42954	CDX1,2,4.p2	NM_011177|Klk6|19144|kallikrein related-peptidase 6	Y18723|Klk6|19144|kallikrein related-peptidase 6
mm9_v1_chr10_+_80720251_80720289	1.42889	CDX1,2,4.p2	AK079816|Matk|17179|megakaryocyte-associated tyrosine kinase	U05210|Matk|17179|megakaryocyte-associated tyrosine kinase	L27738|Matk|17179|megakaryocyte-associated tyrosine kinase	NM_010768|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr13_-_67710581_67710643	1.42746	CDX1,2,4.p2	AK170565|AA987161|380856|expressed sequence AA987161	BC047145|AA987161|380856|expressed sequence AA987161	AK137425|AA987161|380856|expressed sequence AA987161
mm9_v1_chr17_-_57013869_57013869	1.42353	CDX1,2,4.p2	DQ250679|Acsbg2|328845|acyl-CoA synthetase bubblegum family member 2	NM_001039114|Acsbg2|328845|acyl-CoA synthetase bubblegum family member 2
mm9_v1_chr7_+_21657274_21657274	1.4211	CDX1,2,4.p2	NM_001166744|Vmn1r116|667268|vomeronasal 1 receptor 116
mm9_v1_chr3_-_144637974_144638008	1.40996	CDX1,2,4.p2	AY560902|Clca6|99663|chloride channel calcium activated 6	AY560903|Clca6|99663|chloride channel calcium activated 6	AK033591|Clca6|99663|chloride channel calcium activated 6	NM_207208|Clca6|99663|chloride channel calcium activated 6
mm9_v1_chr1_-_16093257_16093367	1.40986	CDX1,2,4.p2	
mm9_v1_chr3_-_106022381_106022396	1.40984	CDX1,2,4.p2	AY049765|Chi3l4|104183|chitinase 3-like 4	AY065557|Chi3l4|104183|chitinase 3-like 4	BC130015|Chi3l4|104183|chitinase 3-like 4	AK131914|Chi3l4|104183|chitinase 3-like 4	NM_145126|Chi3l4|104183|chitinase 3-like 4
mm9_v1_chr10_+_75052084_75052401	1.40723	CDX1,2,4.p2	AK140308|Ggt5|23887|gamma-glutamyltransferase 5	AK049084|Ggt5|23887|gamma-glutamyltransferase 5	AK052183|Ggt5|23887|gamma-glutamyltransferase 5	BC089585|Ggt5|23887|gamma-glutamyltransferase 5	NM_011820|Ggt5|23887|gamma-glutamyltransferase 5	AK085788|Ggt5|23887|gamma-glutamyltransferase 5	AF077765|Ggt5|23887|gamma-glutamyltransferase 5	AK170326|Ggt5|23887|gamma-glutamyltransferase 5	BC051971|Ggt5|23887|gamma-glutamyltransferase 5	BC113775|Ggt5|23887|gamma-glutamyltransferase 5
mm9_v1_chr5_-_122286761_122286840	1.40412	CDX1,2,4.p2	BC006759|Sh2b3|16923|SH2B adaptor protein 3	NM_008507|Sh2b3|16923|SH2B adaptor protein 3	AK157297|Sh2b3|16923|SH2B adaptor protein 3	AK172551|Sh2b3|16923|SH2B adaptor protein 3	AK172573|Sh2b3|16923|SH2B adaptor protein 3	AK156499|Sh2b3|16923|SH2B adaptor protein 3
mm9_v1_chrX_+_97821403_97821491	1.4004	CDX1,2,4.p2	NM_008446|Kif4|16571|kinesin family member 4	AK084837|Kif4|16571|kinesin family member 4	AK135179|Kif4|16571|kinesin family member 4	BC050946|Kif4|16571|kinesin family member 4	BC054537|Kif4|16571|kinesin family member 4	AK171938|Kif4|16571|kinesin family member 4
mm9_v1_chr4_+_125806078_125806220	1.40005	CDX1,2,4.p2	AK050808|Stk40|74178|serine/threonine kinase 40
mm9_v1_chr8_-_131589372_131589416	1.39753	CDX1,2,4.p2	AK015811|Ccdc7|74703|coiled-coil domain containing 7	AK016006|Ccdc7|74703|coiled-coil domain containing 7	EF100607|Ccdc7|74703|coiled-coil domain containing 7	NM_001197041|Ccdc7|74703|coiled-coil domain containing 7	NM_029061|Ccdc7|74703|coiled-coil domain containing 7	AY854152|Ccdc7|74703|coiled-coil domain containing 7
mm9_v1_chr9_-_21564742_21564759	1.39735	CDX1,2,4.p2	AK153185|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK011728|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK167877|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm9_v1_chr4_-_109959185_109959241	1.39473	CDX1,2,4.p2	D31953|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK014133|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	DQ437511|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr3_-_105604199_105604320	1.39449	CDX1,2,4.p2	AK152504|Rap1a|109905|RAS-related protein-1a	AK030897|Rap1a|109905|RAS-related protein-1a	BC051419|Rap1a|109905|RAS-related protein-1a	NM_145541|Rap1a|109905|RAS-related protein-1a
mm9_v1_chr3_-_107024646_107024651	1.39222	CDX1,2,4.p2	BC147477|Cym|229697|chymosin	BC171994|Cym|229697|chymosin	NM_001111143|Cym|229697|chymosin
mm9_v1_chr5_+_8046077_8046128	1.39152	CDX1,2,4.p2	AK008783|Sri|109552|sorcin	NM_025618|Sri|109552|sorcin	AK008404|Sri|109552|sorcin	AK008970|Sri|109552|sorcin
mm9_v1_chr6_+_142246944_142246973	1.38966	CDX1,2,4.p2	NM_010491|Iapp|15874|islet amyloid polypeptide	BC027527|Iapp|15874|islet amyloid polypeptide
mm9_v1_chr9_-_15084310_15084404	1.38666	CDX1,2,4.p2	BC020185|Med17|234959|mediator complex subunit 17	NM_144933|Med17|234959|mediator complex subunit 17	AK033151|Med17|234959|mediator complex subunit 17	AK142033|Med17|234959|mediator complex subunit 17	AK038451|Med17|234959|mediator complex subunit 17	AK049112|Med17|234959|mediator complex subunit 17	AK151377|Med17|234959|mediator complex subunit 17
mm9_v1_chr6_+_70676428_70676433	1.38646	CDX1,2,4.p2	
mm9_v1_chr4_+_154929136_154929270	1.38554	CDX1,2,4.p2	AK218112|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK190349|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK191980|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK199789|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK200062|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr8_+_86239094_86239097	1.38485	CDX1,2,4.p2	NM_197982|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
mm9_v1_chr6_+_135148004_135148077	1.37399	CDX1,2,4.p2	AK169892|8430419L09Rik|74525|RIKEN cDNA 8430419L09 gene	NM_028982|8430419L09Rik|74525|RIKEN cDNA 8430419L09 gene	BC137674|8430419L09Rik|74525|RIKEN cDNA 8430419L09 gene	BC137676|8430419L09Rik|74525|RIKEN cDNA 8430419L09 gene	AK018428|8430419L09Rik|74525|RIKEN cDNA 8430419L09 gene	AK155128|8430419L09Rik|74525|RIKEN cDNA 8430419L09 gene	AK039401|8430419L09Rik|74525|RIKEN cDNA 8430419L09 gene	BC079676|8430419L09Rik|74525|RIKEN cDNA 8430419L09 gene
mm9_v1_chr12_-_103196366_103196464	1.37015	CDX1,2,4.p2	AF537188|Atxn3|110616|ataxin 3	AK030842|Atxn3|110616|ataxin 3	AK008675|Atxn3|110616|ataxin 3	BC087880|Atxn3|110616|ataxin 3	BC049743|Atxn3|110616|ataxin 3	NM_001167914|Atxn3|110616|ataxin 3	NM_029705|Atxn3|110616|ataxin 3
mm9_v1_chr16_-_16073490_16073537	1.36992	CDX1,2,4.p2	AK170784|2310008H04Rik|224008|RIKEN cDNA 2310008H04 gene
mm9_v1_chr2_+_91570249_91570297	1.36143	CDX1,2,4.p2	NM_001080754|Ambra1|228361|autophagy/beclin 1 regulator 1	NM_172669|Ambra1|228361|autophagy/beclin 1 regulator 1
mm9_v1_chr7_+_5996762_5996870	1.36108	CDX1,2,4.p2	AK133284|Nlrp4c|83564|NLR family, pyrin domain containing 4C	AY596194|Nlrp4c|83564|NLR family, pyrin domain containing 4C	NM_031389|Nlrp4c|83564|NLR family, pyrin domain containing 4C	AK166817|Nlrp4c|83564|NLR family, pyrin domain containing 4C	AK166869|Nlrp4c|83564|NLR family, pyrin domain containing 4C
mm9_v1_chr4_-_151822815_151822985	1.35924	CDX1,2,4.p2	AK152613|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	L48983|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	AK157053|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm9_v1_chr6_+_136467388_136467391	1.35924	CDX1,2,4.p2	BC060246|Atf7ip|54343|activating transcription factor 7 interacting protein
mm9_v1_chr4_+_125773958_125773995	1.35833	CDX1,2,4.p2	AK143443|Lsm10|116748|U7 snRNP-specific Sm-like protein LSM10	BC026476|Lsm10|116748|U7 snRNP-specific Sm-like protein LSM10	BC024543|Lsm10|116748|U7 snRNP-specific Sm-like protein LSM10
mm9_v1_chr14_+_63752151_63752250	1.35829	CDX1,2,4.p2	M14222|Ctsb|13030|cathepsin B	AK190209|Ctsb|13030|cathepsin B	AK190539|Ctsb|13030|cathepsin B	AK191055|Ctsb|13030|cathepsin B	AK191391|Ctsb|13030|cathepsin B	AK196955|Ctsb|13030|cathepsin B	AK198213|Ctsb|13030|cathepsin B	AK199268|Ctsb|13030|cathepsin B	AK201893|Ctsb|13030|cathepsin B	AK202291|Ctsb|13030|cathepsin B	AK203639|Ctsb|13030|cathepsin B
mm9_v1_chr16_-_45408997_45409165	1.35173	CDX1,2,4.p2	AF004023|Cd200|17470|CD200 antigen	BC019172|Cd200|17470|CD200 antigen	AK009051|2300009N04Rik|69477|RIKEN cDNA 2300009N04 gene	BC051984|Cd200|17470|CD200 antigen	AK164478|Cd200|17470|CD200 antigen	BC054759|Cd200|17470|CD200 antigen	AK131640|2300009N04Rik|69477|RIKEN cDNA 2300009N04 gene	AK148308|Cd200|17470|CD200 antigen	NM_010818|Cd200|17470|CD200 antigen
mm9_v1_chr9_+_121643763_121643808	1.34953	CDX1,2,4.p2	AK052484|Nktr|18087|natural killer tumor recognition sequence
mm9_v1_chr4_-_143571878_143571887	1.34794	CDX1,2,4.p2	AK019465|3930401B19Rik|77570|RIKEN cDNA 3930401B19 gene
mm9_v1_chr6_+_51494591_51494699	1.34594	CDX1,2,4.p2	AK152004|Snx10|71982|sorting nexin 10
mm9_v1_chr4_-_21694265_21694282	1.33729	CDX1,2,4.p2	AK011611|2610029I01Rik|77032|RIKEN cDNA 2610029I01 gene
mm9_v1_chr5_-_83783923_83784219	1.33544	CDX1,2,4.p2	AK052302|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	AK052378|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	AK052276|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	BC107366|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	BC107367|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	AF548365|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	AK052284|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	NM_153801|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like
mm9_v1_chr11_-_26493610_26493704	1.33486	CDX1,2,4.p2	AK012664|Vrk2|69922|vaccinia related kinase 2	AK053297|Vrk2|69922|vaccinia related kinase 2	AK154485|Vrk2|69922|vaccinia related kinase 2
mm9_v1_chr5_-_123183255_123183351	1.33444	CDX1,2,4.p2	AK050846|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chr10_-_122550401_122550537	1.33279	CDX1,2,4.p2	AK088952|Usp15|14479|ubiquitin specific peptidase 15
mm9_v1_chr6_-_69651268_69651335	1.3289	CDX1,2,4.p2	
mm9_v1_chrX_+_155970637_155970677	1.32608	CDX1,2,4.p2	BC075674|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene	AK145159|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene
mm9_v1_chr18_+_86882439_86882439	1.32497	CDX1,2,4.p2	AK032112|Cbln2|12405|cerebellin 2 precursor protein	NM_172633|Cbln2|12405|cerebellin 2 precursor protein
mm9_v1_chr3_+_84470113_84470209	1.32362	CDX1,2,4.p2	AK081441|Tmem154|320782|transmembrane protein 154	NM_177260|Tmem154|320782|transmembrane protein 154	AK171510|Tmem154|320782|transmembrane protein 154	BC113174|Tmem154|320782|transmembrane protein 154	BC113175|Tmem154|320782|transmembrane protein 154	AK154236|Tmem154|320782|transmembrane protein 154	AK037111|Tmem154|320782|transmembrane protein 154
mm9_v1_chr17_+_46633703_46633755	1.31889	CDX1,2,4.p2	BC082791|BC048355|381101|cDNA sequence BC048355	AK146723|BC048355|381101|cDNA sequence BC048355	NM_207161|BC048355|381101|cDNA sequence BC048355	BC048355|BC048355|381101|cDNA sequence BC048355	AK151589|BC048355|381101|cDNA sequence BC048355
mm9_v1_chr6_+_30491641_30491643	1.3181	CDX1,2,4.p2	NM_001024698|Cpa2|232680|carboxypeptidase A2, pancreatic
mm9_v1_chr1_-_88008483_88008544	1.31555	CDX1,2,4.p2	BC023690|Htr2b|15559|5-hydroxytryptamine (serotonin) receptor 2B	AK033713|Htr2b|15559|5-hydroxytryptamine (serotonin) receptor 2B	NM_008311|Htr2b|15559|5-hydroxytryptamine (serotonin) receptor 2B
mm9_v1_chr13_-_101087625_101087658	1.31342	CDX1,2,4.p2	AF135494|Naip6|17952|NLR family, apoptosis inhibitory protein 6	NM_021545|Naip7|53880|NLR family, apoptosis inhibitory protein 7
mm9_v1_chr6_+_51494521_51494550	1.31209	CDX1,2,4.p2	AK028163|Snx10|71982|sorting nexin 10	NM_001127348|Snx10|71982|sorting nexin 10	NM_028035|Snx10|71982|sorting nexin 10	AK166121|Snx10|71982|sorting nexin 10
mm9_v1_chr6_+_100783598_100783865	1.31069	CDX1,2,4.p2	BC110429|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	AK082539|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	NM_182939|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	AK084169|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	BC112399|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	BC056340|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	BC098464|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2
mm9_v1_chr13_-_19487662_19487670	1.30968	CDX1,2,4.p2	AK030365|Stard3nl|76205|STARD3 N-terminal like	AK152116|Stard3nl|76205|STARD3 N-terminal like
mm9_v1_chr1_-_180267841_180267909	1.30778	CDX1,2,4.p2	AF073992|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK159956|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK037517|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK168657|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK029944|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK159084|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr1_+_87546558_87546676	1.306	CDX1,2,4.p2	AK042095|Sp100|20684|nuclear antigen Sp100	AK080004|Sp100|20684|nuclear antigen Sp100	AK152348|Sp100|20684|nuclear antigen Sp100	U83630|Sp100|20684|nuclear antigen Sp100	AK146054|Sp100|20684|nuclear antigen Sp100	AK153487|Sp100|20684|nuclear antigen Sp100	BC069183|Sp100|20684|nuclear antigen Sp100	AK083304|Sp100|20684|nuclear antigen Sp100	NM_013673|Sp100|20684|nuclear antigen Sp100	CT010199|Sp100|20684|nuclear antigen Sp100	U83636|Sp100|20684|nuclear antigen Sp100
mm9_v1_chr5_-_116252183_116252221	1.3038	CDX1,2,4.p2	BC002062|Rpl29|19944|ribosomal protein L29	BC019179|Rpl29|19944|ribosomal protein L29	BC082292|Rpl29|19944|ribosomal protein L29	L08651|Rpl29|19944|ribosomal protein L29	BC096575|Rpl29|19944|ribosomal protein L29	BC094039|Rpl29|19944|ribosomal protein L29	AK088551|Rpl29|19944|ribosomal protein L29
mm9_v1_chr4_+_6321713_6321979	1.30063	CDX1,2,4.p2	AK213873|Sdcbp|53378|syndecan binding protein
mm9_v1_chr14_-_34195326_34195332	1.297	CDX1,2,4.p2	AK047936|Mapk8|26419|mitogen-activated protein kinase 8	AK053062|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr6_+_48597232_48597434	1.29665	CDX1,2,4.p2	AK134199|Gimap8|243374|GTPase, IMAP family member 8	NM_001077410|Gimap8|243374|GTPase, IMAP family member 8	AB178029|Gimap8|243374|GTPase, IMAP family member 8	AK155985|Gimap8|243374|GTPase, IMAP family member 8	NM_212486|Gimap8|243374|GTPase, IMAP family member 8	BC137943|Gimap8|243374|GTPase, IMAP family member 8	BC137944|Gimap8|243374|GTPase, IMAP family member 8	AJ617674|Gimap8|243374|GTPase, IMAP family member 8
mm9_v1_chr3_+_94926272_94926508	1.2954	CDX1,2,4.p2	
mm9_v1_chr19_-_41289262_41289457	1.29407	CDX1,2,4.p2	AK008994|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK159802|Tm9sf3|107358|transmembrane 9 superfamily member 3
mm9_v1_chr19_+_53214934_53215104	1.29121	CDX1,2,4.p2	NM_001164099|Add3|27360|adducin 3 (gamma)	NM_001164101|Add3|27360|adducin 3 (gamma)	AK019491|Add3|27360|adducin 3 (gamma)	AK028481|Add3|27360|adducin 3 (gamma)	AK083939|Add3|27360|adducin 3 (gamma)	BC029196|Add3|27360|adducin 3 (gamma)	AK035151|Add3|27360|adducin 3 (gamma)
mm9_v1_chrX_+_99314793_99314850	1.28247	CDX1,2,4.p2	BC119355|Pin4|69713|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	BC119357|Pin4|69713|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	NM_027181|Pin4|69713|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	AK010338|Pin4|69713|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
mm9_v1_chr7_-_148358709_148358768	1.28012	CDX1,2,4.p2	AK145173|Rnh1|107702|ribonuclease/angiogenin inhibitor 1	NM_001172100|Rnh1|107702|ribonuclease/angiogenin inhibitor 1
mm9_v1_chr3_+_89586320_89586446	1.27986	CDX1,2,4.p2	AK211403|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr2_+_90780646_90780662	1.27936	CDX1,2,4.p2	AK143698|Celf1|13046|CUGBP, Elav-like family member 1
mm9_v1_chr6_+_56985906_56985906	1.26226	CDX1,2,4.p2	AF394951|Vmn1r8|171205|vomeronasal 1 receptor 8	NM_134187|Vmn1r8|171205|vomeronasal 1 receptor 8
mm9_v1_chr11_+_98769464_98769464	1.26032	CDX1,2,4.p2	AJ009559|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AJ223087|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	NM_011799|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)
mm9_v1_chr9_-_14708327_14708394	1.25934	CDX1,2,4.p2	AK041596|Folr4|64931|folate receptor 4 (delta)	AF250145|Folr4|64931|folate receptor 4 (delta)	BC028431|Folr4|64931|folate receptor 4 (delta)	AK083306|Folr4|64931|folate receptor 4 (delta)	NM_022888|Folr4|64931|folate receptor 4 (delta)	NM_176807|Folr4|64931|folate receptor 4 (delta)
mm9_v1_chr11_-_70501430_70501474	1.25732	CDX1,2,4.p2	AK039670|Camta2|216874|calmodulin binding transcription activator 2	BC049133|Camta2|216874|calmodulin binding transcription activator 2	BC056395|Camta2|216874|calmodulin binding transcription activator 2	AK169118|Camta2|216874|calmodulin binding transcription activator 2	AK150186|Camta2|216874|calmodulin binding transcription activator 2
mm9_v1_chr16_+_93832365_93832557	1.25408	CDX1,2,4.p2	AK172896|Morc3|338467|microrchidia 3	NM_001045529|Morc3|338467|microrchidia 3	BC145705|Morc3|338467|microrchidia 3	AK144885|Morc3|338467|microrchidia 3	AK132226|Morc3|338467|microrchidia 3	BC098072|Morc3|338467|microrchidia 3
mm9_v1_chr4_+_125773896_125773946	1.24596	CDX1,2,4.p2	NM_001163266|Lsm10|116748|U7 snRNP-specific Sm-like protein LSM10	NM_138721|Lsm10|116748|U7 snRNP-specific Sm-like protein LSM10
mm9_v1_chr4_+_143002328_143002328	1.24584	CDX1,2,4.p2	AK029142|Pramef8|242736|PRAME family member 8	NM_172877|Pramef8|242736|PRAME family member 8
mm9_v1_chr13_+_24904944_24904959	1.24462	CDX1,2,4.p2	AK088171|BC005537|79555|cDNA sequence BC005537
mm9_v1_chr8_-_113824073_113824198	1.24169	CDX1,2,4.p2	AK137698|Rfwd3|234736|ring finger and WD repeat domain 3	BC096602|Rfwd3|234736|ring finger and WD repeat domain 3	AK146451|Rfwd3|234736|ring finger and WD repeat domain 3	BC018533|Rfwd3|234736|ring finger and WD repeat domain 3	AK137499|Rfwd3|234736|ring finger and WD repeat domain 3	AK139032|Rfwd3|234736|ring finger and WD repeat domain 3	BC023694|Rfwd3|234736|ring finger and WD repeat domain 3	NM_146218|Rfwd3|234736|ring finger and WD repeat domain 3
mm9_v1_chr3_-_88259682_88259708	1.23924	CDX1,2,4.p2	NM_013658|Sema4a|20351|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm9_v1_chr10_-_29920326_29920345	1.23436	CDX1,2,4.p2	AK005988|Cenpw|66311|centromere protein W	AK011700|Cenpw|66311|centromere protein W	AK141272|Cenpw|66311|centromere protein W	BC147188|Cenpw|66311|centromere protein W	BC147189|Cenpw|66311|centromere protein W	BC147710|Cenpw|66311|centromere protein W	BC147721|Cenpw|66311|centromere protein W	NM_001109747|Cenpw|66311|centromere protein W
mm9_v1_chr6_-_6528581_6528672	1.23347	CDX1,2,4.p2	U41626|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK135462|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK167914|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	BC023490|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	BC058117|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK161690|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	X83589|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK160432|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	NM_009169|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK141911|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1
mm9_v1_chr11_-_42134509_42134538	1.2327	CDX1,2,4.p2	X51986|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6
mm9_v1_chr10_+_98453513_98453709	1.23166	CDX1,2,4.p2	AK053569|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	AK042547|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chr11_+_85413817_85413884	1.23007	CDX1,2,4.p2	AK078571|7030407E18Rik|399600|RIKEN cDNA 7030407E18 gene
mm9_v1_chr15_-_101700048_101700137	1.23003	CDX1,2,4.p2	BC107395|Krt77|406220|keratin 77	BC107396|Krt77|406220|keratin 77	NM_001003667|Krt77|406220|keratin 77	BC141259|Krt77|406220|keratin 77	AK132513|Krt77|406220|keratin 77
mm9_v1_chr8_+_13339673_13339702	1.22577	CDX1,2,4.p2	NM_009361|Tfdp1|21781|transcription factor Dp 1	X72310|Tfdp1|21781|transcription factor Dp 1	BC132567|Tfdp1|21781|transcription factor Dp 1	BC132569|Tfdp1|21781|transcription factor Dp 1	BC145344|Tfdp1|21781|transcription factor Dp 1
mm9_v1_chr13_-_21872421_21872495	1.22528	CDX1,2,4.p2	BC114579|Hist1h1b|56702|histone cluster 1, H1b	NM_020034|Hist1h1b|56702|histone cluster 1, H1b	AK020117|Hist1h1b|56702|histone cluster 1, H1b
mm9_v1_chr17_-_31266539_31266557	1.22399	CDX1,2,4.p2	BC011042|Tff3|21786|trefoil factor 3, intestinal	AK008538|Tff3|21786|trefoil factor 3, intestinal	D38410|Tff3|21786|trefoil factor 3, intestinal	NM_011575|Tff3|21786|trefoil factor 3, intestinal
mm9_v1_chr19_-_41922577_41922621	1.22374	CDX1,2,4.p2	BC034214|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	BC085510|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	AK081171|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	NM_177603|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2
mm9_v1_chr1_-_180260325_180260384	1.22209	CDX1,2,4.p2	
mm9_v1_chr10_-_60610238_60610394	1.22184	CDX1,2,4.p2	AK036747|Sgpl1|20397|sphingosine phosphate lyase 1	AK150053|Sgpl1|20397|sphingosine phosphate lyase 1	AK173137|Sgpl1|20397|sphingosine phosphate lyase 1	AF036894|Sgpl1|20397|sphingosine phosphate lyase 1	BC026135|Sgpl1|20397|sphingosine phosphate lyase 1	AK037789|Sgpl1|20397|sphingosine phosphate lyase 1	AK043024|Sgpl1|20397|sphingosine phosphate lyase 1	AK049342|Sgpl1|20397|sphingosine phosphate lyase 1
mm9_v1_chr5_+_11918042_11918042	1.22163	CDX1,2,4.p2	BC133658|4933402N22Rik|545732|RIKEN cDNA 4933402N22 gene	NM_001177510|4933402N22Rik|545732|RIKEN cDNA 4933402N22 gene
mm9_v1_chr6_-_3444484_3444497	1.22133	CDX1,2,4.p2	BC096374|Hepacam2|101202|HEPACAM family member 2	AK033728|Hepacam2|101202|HEPACAM family member 2	AK050501|Hepacam2|101202|HEPACAM family member 2	NM_178899|Hepacam2|101202|HEPACAM family member 2
mm9_v1_chr6_+_140602773_140602776	1.22069	CDX1,2,4.p2	AK050137|Aebp2|11569|AE binding protein 2
mm9_v1_chr1_+_175350728_175350734	1.21842	CDX1,2,4.p2	BC033443|Aim2|383619|absent in melanoma 2	AK050724|Aim2|383619|absent in melanoma 2	NM_001013779|Aim2|383619|absent in melanoma 2
mm9_v1_chr16_+_19760300_19760490	1.21773	CDX1,2,4.p2	AK037166|B3gnt5|108105|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	AK083839|B3gnt5|108105|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	NM_001159407|B3gnt5|108105|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	NM_001159408|B3gnt5|108105|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	NM_054052|B3gnt5|108105|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	AK032911|B3gnt5|108105|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	AK048010|B3gnt5|108105|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	BC063076|B3gnt5|108105|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm9_v1_chr1_+_74200562_74200594	1.21685	CDX1,2,4.p2	AK158234|Cxcr2|12765|chemokine (C-X-C motif) receptor 2	NM_009909|Cxcr2|12765|chemokine (C-X-C motif) receptor 2	D17630|Cxcr2|12765|chemokine (C-X-C motif) receptor 2	BC051677|Cxcr2|12765|chemokine (C-X-C motif) receptor 2
mm9_v1_chr16_+_26463220_26463558	1.21462	CDX1,2,4.p2	AK085268|Cldn16|114141|claudin 16	NM_053241|Cldn16|114141|claudin 16	AK085333|Cldn16|114141|claudin 16	BC115574|Cldn16|114141|claudin 16	BC115575|Cldn16|114141|claudin 16	AF323748|Cldn16|114141|claudin 16	AB009016|Cldn16|114141|claudin 16
mm9_v1_chr16_+_18426466_18426526	1.21425	CDX1,2,4.p2	AB027566|Txnrd2|26462|thioredoxin reductase 2	AF136399|Txnrd2|26462|thioredoxin reductase 2	AF412308|Txnrd2|26462|thioredoxin reductase 2	NM_013711|Txnrd2|26462|thioredoxin reductase 2
mm9_v1_chrX_-_6765768_6765839	1.21045	CDX1,2,4.p2	AK142227|Clcn5|12728|chloride channel 5	AK145763|Clcn5|12728|chloride channel 5	BC036347|Clcn5|12728|chloride channel 5	AK052990|Clcn5|12728|chloride channel 5	AF134117|Clcn5|12728|chloride channel 5	NM_016691|Clcn5|12728|chloride channel 5
mm9_v1_chr19_+_39585311_39585360	1.20906	CDX1,2,4.p2	BC139290|Cyp2c39|13098|cytochrome P450, family 2, subfamily c, polypeptide 39	BC139291|Cyp2c39|13098|cytochrome P450, family 2, subfamily c, polypeptide 39	NM_010003|Cyp2c39|13098|cytochrome P450, family 2, subfamily c, polypeptide 39	BC057911|Cyp2c39|13098|cytochrome P450, family 2, subfamily c, polypeptide 39	AF047726|Cyp2c39|13098|cytochrome P450, family 2, subfamily c, polypeptide 39
mm9_v1_chr9_-_96233411_96233654	1.20864	CDX1,2,4.p2	AK217555|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK213033|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK205378|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK217181|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK178890|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK181142|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK185963|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK212665|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK214140|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK216038|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK218295|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK218384|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide
mm9_v1_chr17_-_80879792_80879792	1.2085	CDX1,2,4.p2	AK140310|Sos1|20662|son of sevenless homolog 1 (Drosophila)	NM_009231|Sos1|20662|son of sevenless homolog 1 (Drosophila)
mm9_v1_chr7_-_108437135_108437187	1.20423	CDX1,2,4.p2	
mm9_v1_chr19_-_44210311_44210378	1.20402	CDX1,2,4.p2	BC037640|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	BC027553|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	AK012163|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	AK139654|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	NM_001081077|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)
mm9_v1_chr1_+_179374783_179374796	1.20345	CDX1,2,4.p2	BC089333|Zfp238|30928|zinc finger protein 238	NM_001012330|Zfp238|30928|zinc finger protein 238
mm9_v1_chr4_-_87452140_87452217	1.19918	CDX1,2,4.p2	AK147009|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK008707|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK019458|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_029931|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr6_+_137703029_137703138	1.19714	CDX1,2,4.p2	AK145820|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK168204|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK012558|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK008033|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK030961|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK075963|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK150273|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK169418|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK152462|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK034347|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	BC016218|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK083298|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	NM_172733|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK150712|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)
mm9_v1_chr6_-_43259527_43259552	1.18818	CDX1,2,4.p2	AB221582|Nobox|18291|NOBOX oogenesis homeobox	BC125280|Nobox|18291|NOBOX oogenesis homeobox	BC125282|Nobox|18291|NOBOX oogenesis homeobox	AY061761|Nobox|18291|NOBOX oogenesis homeobox	NM_130869|Nobox|18291|NOBOX oogenesis homeobox
mm9_v1_chr5_-_86539474_86539529	1.18515	CDX1,2,4.p2	AK017687|Uba6|231380|ubiquitin-like modifier activating enzyme 6
mm9_v1_chr8_+_22675857_22675857	1.18496	CDX1,2,4.p2	NM_001177522|Gm14850|100041895|predicted gene 14850
mm9_v1_chr6_-_30341017_30341032	1.18292	CDX1,2,4.p2	AK168071|Zc3hc1|232679|zinc finger, C3HC type 1	AK146228|Zc3hc1|232679|zinc finger, C3HC type 1	AK167992|Zc3hc1|232679|zinc finger, C3HC type 1
mm9_v1_chr6_+_134346344_134346362	1.17685	CDX1,2,4.p2	AK160247|Bcl2l14|66813|BCL2-like 14 (apoptosis facilitator)	AK016670|Bcl2l14|66813|BCL2-like 14 (apoptosis facilitator)	NM_025778|Bcl2l14|66813|BCL2-like 14 (apoptosis facilitator)	AK016997|Bcl2l14|66813|BCL2-like 14 (apoptosis facilitator)	AK015447|Bcl2l14|66813|BCL2-like 14 (apoptosis facilitator)
mm9_v1_chr17_-_43013320_43013409	1.17264	CDX1,2,4.p2	BC138374|Cd2ap|12488|CD2-associated protein	BC157901|Cd2ap|12488|CD2-associated protein	AK045218|Cd2ap|12488|CD2-associated protein	NM_009847|Cd2ap|12488|CD2-associated protein
mm9_v1_chr2_+_153956082_153956082	1.17132	CDX1,2,4.p2	AK006829|1700058C13Rik|73388|RIKEN cDNA 1700058C13 gene	BC049691|1700058C13Rik|73388|RIKEN cDNA 1700058C13 gene	NM_028528|1700058C13Rik|73388|RIKEN cDNA 1700058C13 gene
mm9_v1_chr11_-_94644016_94644016	1.1711	CDX1,2,4.p2	AK139848|Tmem92-ps|544806|transmembrane protein 92, pseudogene	NM_001034896|Tmem92-ps|544806|transmembrane protein 92, pseudogene
mm9_v1_chr1_+_177562307_177562314	1.1679	CDX1,2,4.p2	AK129011|Kmo|98256|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
mm9_v1_chr5_+_30969259_30969346	1.16456	CDX1,2,4.p2	AF012709|Cenpa|12615|centromere protein A	NM_007681|Cenpa|12615|centromere protein A	AK040313|Cenpa|12615|centromere protein A	AK041138|Cenpa|12615|centromere protein A	AK089033|Cenpa|12615|centromere protein A	AK053763|Cenpa|12615|centromere protein A	AK010718|Cenpa|12615|centromere protein A	BC011038|Cenpa|12615|centromere protein A	AK011399|Cenpa|12615|centromere protein A	BC012280|Cenpa|12615|centromere protein A
mm9_v1_chr6_-_70868896_70868915	1.16055	CDX1,2,4.p2	BC049736|1700011F03Rik|74221|RIKEN cDNA 1700011F03 gene	AK005862|1700011F03Rik|74221|RIKEN cDNA 1700011F03 gene	NM_028825|1700011F03Rik|74221|RIKEN cDNA 1700011F03 gene
mm9_v1_chr10_+_34109784_34109787	1.16042	CDX1,2,4.p2	NM_009925|Col10a1|12813|collagen, type X, alpha 1
mm9_v1_chr14_-_71107810_71107841	1.1569	CDX1,2,4.p2	AY550930|Xpo7|65246|exportin 7	AK143729|Xpo7|65246|exportin 7
mm9_v1_chr11_-_97627829_97627926	1.15659	CDX1,2,4.p2	BC021478|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	BC079553|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	AK030628|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	AK035158|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	AK004983|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	AK017849|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	NM_026186|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)
mm9_v1_chr11_-_82853975_82854034	1.14745	CDX1,2,4.p2	BC115828|Slfn10-ps|237887|schlafen 10, pseudogene	AY261803|Slfn10-ps|237887|schlafen 10, pseudogene	AK144698|Slfn10-ps|237887|schlafen 10, pseudogene	AY261802|Slfn10-ps|237887|schlafen 10, pseudogene	NM_181542|Slfn10-ps|237887|schlafen 10, pseudogene
mm9_v1_chr17_+_23949101_23949124	1.14572	CDX1,2,4.p2	AK081577|Srrm2|75956|serine/arginine repetitive matrix 2
mm9_v1_chr12_+_75065534_75065545	1.14114	CDX1,2,4.p2	BC030456|Snapc1|75627|small nuclear RNA activating complex, polypeptide 1
mm9_v1_chr1_-_36864987_36865029	1.13849	CDX1,2,4.p2	BC120906|Tmem131|56030|transmembrane protein 131	BC139734|Tmem131|56030|transmembrane protein 131
mm9_v1_chr11_-_106646226_106646242	1.13674	CDX1,2,4.p2	AK013106|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr2_+_152695336_152695453	1.13514	CDX1,2,4.p2	AK167030|Tpx2|72119|TPX2, microtubule-associated protein homolog (Xenopus laevis)	AK011311|Tpx2|72119|TPX2, microtubule-associated protein homolog (Xenopus laevis)
mm9_v1_chr10_+_80217947_80217975	1.13082	CDX1,2,4.p2	AK035144|Dot1l|208266|DOT1-like, histone H3 methyltransferase (S. cerevisiae)	AY196089|Dot1l|208266|DOT1-like, histone H3 methyltransferase (S. cerevisiae)	NM_199322|Dot1l|208266|DOT1-like, histone H3 methyltransferase (S. cerevisiae)	AY376663|Dot1l|208266|DOT1-like, histone H3 methyltransferase (S. cerevisiae)
mm9_v1_chr7_+_130337876_130337891	1.12744	CDX1,2,4.p2	AK014218|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chrX_+_155970593_155970627	1.12705	CDX1,2,4.p2	AK044001|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene	NM_001033472|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene
mm9_v1_chr11_+_102294276_102294332	1.12412	CDX1,2,4.p2	BC037047|Grn|14824|granulin	X62321|Grn|14824|granulin	AK196399|Grn|14824|granulin	AK205747|Grn|14824|granulin
mm9_v1_chr2_+_164323024_164323043	1.12164	CDX1,2,4.p2	NM_133779|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK049171|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK049990|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK019717|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK090020|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK155057|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK153462|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK153464|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK044499|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK157226|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T
mm9_v1_chr19_+_47142217_47142252	1.1195	CDX1,2,4.p2	AK031985|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK088953|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_177342|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK169453|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chrX_-_91368713_91368747	1.11935	CDX1,2,4.p2	L19714|Zfx|22764|zinc finger protein X-linked	AK145115|Zfx|22764|zinc finger protein X-linked	NM_001044386|Zfx|22764|zinc finger protein X-linked	NM_011768|Zfx|22764|zinc finger protein X-linked
mm9_v1_chr18_-_39646734_39646900	1.11876	CDX1,2,4.p2	AK037733|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	DQ504162|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	HM236293|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13358|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13359|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	NM_008173|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129912|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129913|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X04435|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr2_+_132516018_132516018	1.11777	CDX1,2,4.p2	BC100475|1110034G24Rik|73747|RIKEN cDNA 1110034G24 gene	NM_028637|1110034G24Rik|73747|RIKEN cDNA 1110034G24 gene
mm9_v1_chr17_-_34253887_34254086	1.11711	CDX1,2,4.p2	AK179882|Brd2|14312|bromodomain containing 2	AK205877|Brd2|14312|bromodomain containing 2	AK218127|Brd2|14312|bromodomain containing 2	AB212273|Brd2|14312|bromodomain containing 2	AB010248|Brd2|14312|bromodomain containing 2
mm9_v1_chr13_+_64533703_64533885	1.11462	CDX1,2,4.p2	AY005133|Cdk20|105278|cyclin-dependent kinase 20	BC031907|Cdk20|105278|cyclin-dependent kinase 20	NM_053180|Cdk20|105278|cyclin-dependent kinase 20	BC058353|Cdk20|105278|cyclin-dependent kinase 20
mm9_v1_chr2_+_164323044_164323060	1.11308	CDX1,2,4.p2	AK162573|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	BC016520|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	BC034175|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T
mm9_v1_chr1_-_158585297_158585426	1.11266	CDX1,2,4.p2	AK208420|Tor3a|30935|torsin family 3, member A
mm9_v1_chr10_+_57857120_57857135	1.11197	CDX1,2,4.p2	AK009390|Lims1|110829|LIM and senescent cell antigen-like domains 1	NM_001193303|Lims1|110829|LIM and senescent cell antigen-like domains 1	DQ003608|Lims1|110829|LIM and senescent cell antigen-like domains 1
mm9_v1_chr3_-_19164956_19164968	1.11051	CDX1,2,4.p2	U68171|Pde7a|18583|phosphodiesterase 7A	AK168957|Pde7a|18583|phosphodiesterase 7A	NM_008802|Pde7a|18583|phosphodiesterase 7A
mm9_v1_chr4_+_155186568_155186886	1.11007	CDX1,2,4.p2	NM_207678|Ccnl2|56036|cyclin L2	AK007552|Ccnl2|56036|cyclin L2	BC132295|Ccnl2|56036|cyclin L2	AK048244|Ccnl2|56036|cyclin L2	AK156037|Ccnl2|56036|cyclin L2	AB041605|Ccnl2|56036|cyclin L2	AY337018|Ccnl2|56036|cyclin L2	AK169857|Ccnl2|56036|cyclin L2	BC023747|Ccnl2|56036|cyclin L2	AF211859|Ccnl2|56036|cyclin L2	AK044204|Ccnl2|56036|cyclin L2	AK008585|Ccnl2|56036|cyclin L2	AK138938|Ccnl2|56036|cyclin L2
mm9_v1_chr10_+_80720062_80720086	1.10887	CDX1,2,4.p2	X89723|Matk|17179|megakaryocyte-associated tyrosine kinase	BC060086|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr11_+_67346499_67346579	1.10833	CDX1,2,4.p2	NM_008088|Gas7|14457|growth arrest specific 7	BC120528|Gas7|14457|growth arrest specific 7	BC120530|Gas7|14457|growth arrest specific 7
mm9_v1_chr1_-_171461510_171461594	1.10344	CDX1,2,4.p2	AK010351|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK012011|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC020026|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK089939|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AF326732|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK044882|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK162249|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK132467|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	NM_023284|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm9_v1_chr5_-_5265598_5265717	1.10258	CDX1,2,4.p2	AK087398|Cdk14|18647|cyclin-dependent kinase 14	AK165149|Cdk14|18647|cyclin-dependent kinase 14	U62391|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr9_-_58589362_58589365	1.09944	CDX1,2,4.p2	AK010725|2410076I21Rik|73673|RIKEN cDNA 2410076I21 gene	BC038688|2410076I21Rik|73673|RIKEN cDNA 2410076I21 gene	NM_028598|2410076I21Rik|73673|RIKEN cDNA 2410076I21 gene
mm9_v1_chr7_-_50788540_50788580	1.09658	CDX1,2,4.p2	BC132379|Cd33|12489|CD33 antigen	NM_001111058|Cd33|12489|CD33 antigen	NM_021293|Cd33|12489|CD33 antigen
mm9_v1_chr17_-_26232411_26232456	1.09434	CDX1,2,4.p2	AF153451|Nme4|56520|non-metastatic cells 4, protein expressed in	NM_019731|Nme4|56520|non-metastatic cells 4, protein expressed in	AK011573|Nme4|56520|non-metastatic cells 4, protein expressed in	AK017724|Nme4|56520|non-metastatic cells 4, protein expressed in	AF288690|Nme4|56520|non-metastatic cells 4, protein expressed in	BC027277|Nme4|56520|non-metastatic cells 4, protein expressed in	AK012805|Nme4|56520|non-metastatic cells 4, protein expressed in
mm9_v1_chr2_+_162760216_162760271	1.09354	CDX1,2,4.p2	BC029312|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chrX_-_130696466_130696502	1.09271	CDX1,2,4.p2	AY534249|Xkrx|331524|X Kell blood group precursor related X linked	NM_183319|Xkrx|331524|X Kell blood group precursor related X linked	BC150896|Xkrx|331524|X Kell blood group precursor related X linked	BC150897|Xkrx|331524|X Kell blood group precursor related X linked
mm9_v1_chr6_-_58385838_58385887	1.09017	CDX1,2,4.p2	NM_134177|Vmn1r30|171195|vomeronasal 1 receptor 30	BC138075|Vmn1r30|171195|vomeronasal 1 receptor 30	BC138078|Vmn1r30|171195|vomeronasal 1 receptor 30
mm9_v1_chr3_+_103718042_103718073	1.08661	CDX1,2,4.p2	AB101658|Rsbn1|229675|rosbin, round spermatid basic protein 1	NM_172684|Rsbn1|229675|rosbin, round spermatid basic protein 1	BC139213|Rsbn1|229675|rosbin, round spermatid basic protein 1	BC139215|Rsbn1|229675|rosbin, round spermatid basic protein 1
mm9_v1_chrX_+_109608882_109608925	1.08645	CDX1,2,4.p2	AK017156|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene	NM_001168590|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene	NM_026333|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene	AK008319|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene	BC139480|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene	BC139481|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene
mm9_v1_chr18_-_9995729_9995838	1.08521	CDX1,2,4.p2	AK206781|Usp14|59025|ubiquitin specific peptidase 14	AK209109|Usp14|59025|ubiquitin specific peptidase 14
mm9_v1_chr13_-_119175893_119176078	1.08095	CDX1,2,4.p2	AK013360|Mrps30|59054|mitochondrial ribosomal protein S30	BC029784|Mrps30|59054|mitochondrial ribosomal protein S30	AK011476|Mrps30|59054|mitochondrial ribosomal protein S30	AK151642|Mrps30|59054|mitochondrial ribosomal protein S30	NM_021556|Mrps30|59054|mitochondrial ribosomal protein S30
mm9_v1_chr7_-_21161589_21161589	1.07869	CDX1,2,4.p2	NM_001167162|Gm4201|100043061|predicted gene 4201	NM_001167163|Gm4141|100042976|predicted gene 4141
mm9_v1_chr1_-_39634096_39634285	1.07835	CDX1,2,4.p2	BC115968|Rnf149|67702|ring finger protein 149	NM_001033135|Rnf149|67702|ring finger protein 149	AK155360|Rnf149|67702|ring finger protein 149
mm9_v1_chr10_-_22451738_22451780	1.07824	CDX1,2,4.p2	AK005604|Tbpl1|237336|TATA box binding protein-like 1
mm9_v1_chr2_+_91570304_91570382	1.07401	CDX1,2,4.p2	AK148887|Ambra1|228361|autophagy/beclin 1 regulator 1	AK084557|Ambra1|228361|autophagy/beclin 1 regulator 1	AK155513|Ambra1|228361|autophagy/beclin 1 regulator 1	AK037516|Ambra1|228361|autophagy/beclin 1 regulator 1	AK083596|Ambra1|228361|autophagy/beclin 1 regulator 1	AK169280|Ambra1|228361|autophagy/beclin 1 regulator 1	BC054082|Ambra1|228361|autophagy/beclin 1 regulator 1	BC032293|Ambra1|228361|autophagy/beclin 1 regulator 1
mm9_v1_chr11_-_41813792_41813857	1.06642	CDX1,2,4.p2	AK047085|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK136889|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	NM_177408|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233775|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233776|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233777|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233778|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233779|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233780|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233781|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233782|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233783|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233784|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233785|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233786|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233787|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233788|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233789|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233790|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233791|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233792|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233793|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233794|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233795|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233796|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233797|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233798|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233799|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233800|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233801|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233802|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK141129|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK049857|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm9_v1_chr15_+_83393975_83394050	1.06378	CDX1,2,4.p2	NM_009775|Tspo|12257|translocator protein	AK151824|Tspo|12257|translocator protein	AK153273|Tspo|12257|translocator protein	AK165822|Tspo|12257|translocator protein	AK166125|Tspo|12257|translocator protein	AK151569|Tspo|12257|translocator protein	AK156489|Tspo|12257|translocator protein	AK172384|Tspo|12257|translocator protein	AK149743|Tspo|12257|translocator protein	AK151421|Tspo|12257|translocator protein	AK152860|Tspo|12257|translocator protein	AK153159|Tspo|12257|translocator protein	AK165450|Tspo|12257|translocator protein	AK150516|Tspo|12257|translocator protein	AK152082|Tspo|12257|translocator protein	AK152827|Tspo|12257|translocator protein	BC002055|Tspo|12257|translocator protein	D21207|Tspo|12257|translocator protein
mm9_v1_chr10_-_29920293_29920323	1.0608	CDX1,2,4.p2	BC050071|Cenpw|66311|centromere protein W
mm9_v1_chr6_-_138028436_138028436	1.0608	CDX1,2,4.p2	NM_177787|Slc15a5|277898|solute carrier family 15, member 5
mm9_v1_chr14_-_56721304_56721410	1.05992	CDX1,2,4.p2	BC125511|Ctsg|13035|cathepsin G	BC125513|Ctsg|13035|cathepsin G	NM_007800|Ctsg|13035|cathepsin G	X78544|Ctsg|13035|cathepsin G
mm9_v1_chr12_+_75065510_75065528	1.05401	CDX1,2,4.p2	AK152833|Snapc1|75627|small nuclear RNA activating complex, polypeptide 1	AK138261|Snapc1|75627|small nuclear RNA activating complex, polypeptide 1	NM_178392|Snapc1|75627|small nuclear RNA activating complex, polypeptide 1
mm9_v1_chr14_-_99498905_99499000	1.05083	CDX1,2,4.p2	AK012840|Dis3|72662|DIS3 mitotic control homolog (S. cerevisiae)	BC027357|Dis3|72662|DIS3 mitotic control homolog (S. cerevisiae)	AK038313|Dis3|72662|DIS3 mitotic control homolog (S. cerevisiae)	NM_028315|Dis3|72662|DIS3 mitotic control homolog (S. cerevisiae)
mm9_v1_chr13_-_104554635_104554661	1.05032	CDX1,2,4.p2	AK081447|Srsf12|218543|serine/arginine-rich splicing factor 12	AK037115|Srsf12|218543|serine/arginine-rich splicing factor 12	AK033354|Srsf12|218543|serine/arginine-rich splicing factor 12	NM_172592|Srsf12|218543|serine/arginine-rich splicing factor 12
mm9_v1_chr16_+_18426529_18426595	1.04699	CDX1,2,4.p2	BC013688|Txnrd2|26462|thioredoxin reductase 2	BC052157|Txnrd2|26462|thioredoxin reductase 2	BC052758|Txnrd2|26462|thioredoxin reductase 2	AK075828|Txnrd2|26462|thioredoxin reductase 2	BC029344|Txnrd2|26462|thioredoxin reductase 2	AF171053|Txnrd2|26462|thioredoxin reductase 2
mm9_v1_chr2_+_90780665_90780699	1.04397	CDX1,2,4.p2	BC021393|Celf1|13046|CUGBP, Elav-like family member 1
mm9_v1_chr1_-_58561631_58561830	1.04031	CDX1,2,4.p2	BC015257|Orc2|18393|origin recognition complex, subunit 2	NM_008765|Orc2|18393|origin recognition complex, subunit 2	U27457|Orc2|18393|origin recognition complex, subunit 2	AK048408|Orc2|18393|origin recognition complex, subunit 2	AK133604|Orc2|18393|origin recognition complex, subunit 2	AK146281|Orc2|18393|origin recognition complex, subunit 2	AK146859|Orc2|18393|origin recognition complex, subunit 2	AK051747|Orc2|18393|origin recognition complex, subunit 2
mm9_v1_chr5_-_76760118_76760180	1.03969	CDX1,2,4.p2	AK133140|Pdcl2|79455|phosducin-like 2	AK005814|Pdcl2|79455|phosducin-like 2	NM_023508|Pdcl2|79455|phosducin-like 2	BC048432|Pdcl2|79455|phosducin-like 2	AK006773|Pdcl2|79455|phosducin-like 2	AK005602|Pdcl2|79455|phosducin-like 2	AK006040|Pdcl2|79455|phosducin-like 2	AK132738|Pdcl2|79455|phosducin-like 2
mm9_v1_chr13_-_74832039_74832154	1.03847	CDX1,2,4.p2	AK037098|Cast|12380|calpastatin
mm9_v1_chr4_+_134483092_134483164	1.03818	CDX1,2,4.p2	
mm9_v1_chr9_+_26838233_26838356	1.03015	CDX1,2,4.p2	DQ340802|Ncapd3|78658|non-SMC condensin II complex, subunit D3	AK019297|Ncapd3|78658|non-SMC condensin II complex, subunit D3	AK139081|Ncapd3|78658|non-SMC condensin II complex, subunit D3	AK129046|Ncapd3|78658|non-SMC condensin II complex, subunit D3
mm9_v1_chr11_-_120459646_120459770	1.02946	CDX1,2,4.p2	AJ252140|Thoc4|21681|THO complex 4	NM_011568|Thoc4|21681|THO complex 4	U89876|Thoc4|21681|THO complex 4	BC120588|Thoc4|21681|THO complex 4	BC137658|Thoc4|21681|THO complex 4
mm9_v1_chr4_-_117564594_117564651	1.02865	CDX1,2,4.p2	BC031124|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK018638|Dph2|67728|DPH2 homolog (S. cerevisiae)	NM_026344|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK011199|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK051026|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK080747|Dph2|67728|DPH2 homolog (S. cerevisiae)	BC014746|Dph2|67728|DPH2 homolog (S. cerevisiae)
mm9_v1_chrX_+_104344953_104344955	1.0284	CDX1,2,4.p2	NM_175442|A630033H20Rik|213438|RIKEN cDNA A630033H20 gene	AK041740|A630033H20Rik|213438|RIKEN cDNA A630033H20 gene
mm9_v1_chr8_-_19447605_19447605	1.02539	CDX1,2,4.p2	AJ300674|Defb8|244334|defensin beta 8	NM_153108|Defb8|244334|defensin beta 8
mm9_v1_chr7_+_20593371_20593373	1.02477	CDX1,2,4.p2	AY596196|Nlrp9b|243874|NLR family, pyrin domain containing 9B	NM_194058|Nlrp9b|243874|NLR family, pyrin domain containing 9B	BC141249|Nlrp9b|243874|NLR family, pyrin domain containing 9B
mm9_v1_chr11_-_42134548_42134554	1.02336	CDX1,2,4.p2	AK135145|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	AK137331|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	NM_001099641|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	NM_008068|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6
mm9_v1_chr7_+_97357406_97357492	1.02102	CDX1,2,4.p2	AK163129|Picalm|233489|phosphatidylinositol binding clathrin assembly protein
mm9_v1_chr19_-_32423805_32423805	1.01792	CDX1,2,4.p2	BC076618|Sgms1|208449|sphingomyelin synthase 1	NM_001168525|Sgms1|208449|sphingomyelin synthase 1
mm9_v1_chr3_-_130412360_130412367	1.01722	CDX1,2,4.p2	NM_025509|Ostc|66357|oligosaccharyltransferase complex subunit
mm9_v1_chr18_+_21230844_21230846	1.01677	CDX1,2,4.p2	AK098127|Mep1b|17288|meprin 1 beta	L15193|Mep1b|17288|meprin 1 beta	NM_008586|Mep1b|17288|meprin 1 beta	BC145979|Mep1b|17288|meprin 1 beta	BC125627|Mep1b|17288|meprin 1 beta
mm9_v1_chr5_+_122841885_122841976	1.01578	CDX1,2,4.p2	AK003485|Arpc3|56378|actin related protein 2/3 complex, subunit 3	AK005437|Arpc3|56378|actin related protein 2/3 complex, subunit 3	AK171651|Arpc3|56378|actin related protein 2/3 complex, subunit 3	BC013618|Arpc3|56378|actin related protein 2/3 complex, subunit 3	NM_019824|Arpc3|56378|actin related protein 2/3 complex, subunit 3	BC054440|Arpc3|56378|actin related protein 2/3 complex, subunit 3	BC055036|Arpc3|56378|actin related protein 2/3 complex, subunit 3
mm9_v1_chr2_+_158450623_158450686	1.01445	CDX1,2,4.p2	AK046312|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	AK142980|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	NM_175419|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	AK046584|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	BC028806|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	BC052039|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	BC037522|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)
mm9_v1_chr16_-_15966921_15966936	1.01264	CDX1,2,4.p2	BC069859|2310008H04Rik|224008|RIKEN cDNA 2310008H04 gene
mm9_v1_chr8_-_3694155_3694179	1.01167	CDX1,2,4.p2	M99371|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	AK080159|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	M34163|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	NM_013517|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	AK156654|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	AK172591|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide
mm9_v1_chr11_-_104411728_104411933	1.00678	CDX1,2,4.p2	AK039377|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	AK148278|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	BC023187|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	AK161471|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	BC157955|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	BC172100|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	BC172149|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	NM_145436|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)
mm9_v1_chr17_-_36169573_36169660	1.00261	CDX1,2,4.p2	AF100699|H2-T23|15040|histocompatibility 2, T region locus 23	AF100700|H2-T23|15040|histocompatibility 2, T region locus 23	AF100702|H2-T23|15040|histocompatibility 2, T region locus 23	AF057279|H2-T23|15040|histocompatibility 2, T region locus 23	AF082510|H2-T23|15040|histocompatibility 2, T region locus 23	BC099472|H2-T23|15040|histocompatibility 2, T region locus 23	AB359230|H2-T23|15040|histocompatibility 2, T region locus 23	AK133502|H2-T23|15040|histocompatibility 2, T region locus 23	M11284|H2-T23|15040|histocompatibility 2, T region locus 23	NM_010398|H2-T23|15040|histocompatibility 2, T region locus 23
mm9_v1_chr12_-_102267095_102267118	1.00239	CDX1,2,4.p2	AK137260|Ccdc88c|68339|coiled-coil domain containing 88C	AK002458|Ccdc88c|68339|coiled-coil domain containing 88C
mm9_v1_chr1_+_58768329_58768403	0.997506	CDX1,2,4.p2	AK009498|Cflar|12633|CASP8 and FADD-like apoptosis regulator	AK152515|Cflar|12633|CASP8 and FADD-like apoptosis regulator	U97076|Cflar|12633|CASP8 and FADD-like apoptosis regulator
mm9_v1_chr19_-_47044056_47044056	0.997236	CDX1,2,4.p2	NM_001164365|Nt5c2|76952|5'-nucleotidase, cytosolic II
mm9_v1_chr2_+_92025639_92025639	0.99712	CDX1,2,4.p2	AK037174|Phf21a|192285|PHD finger protein 21A	NM_001109691|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr6_+_136467315_136467378	0.996303	CDX1,2,4.p2	AK082697|Atf7ip|54343|activating transcription factor 7 interacting protein	AK167542|Atf7ip|54343|activating transcription factor 7 interacting protein	BC048827|Atf7ip|54343|activating transcription factor 7 interacting protein	AK134252|Atf7ip|54343|activating transcription factor 7 interacting protein	BC052460|Atf7ip|54343|activating transcription factor 7 interacting protein	NM_019426|Atf7ip|54343|activating transcription factor 7 interacting protein	AJ132702|Atf7ip|54343|activating transcription factor 7 interacting protein	BC022714|Atf7ip|54343|activating transcription factor 7 interacting protein
mm9_v1_chr7_-_52636246_52636362	0.995412	CDX1,2,4.p2	BC058513|Snrnp70|20637|small nuclear ribonucleoprotein 70 (U1)
mm9_v1_chr4_-_35792385_35792444	0.994476	CDX1,2,4.p2	BC137866|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC144985|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC145692|Lingo2|242384|leucine rich repeat and Ig domain containing 2	AK045639|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_001166001|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_175516|Lingo2|242384|leucine rich repeat and Ig domain containing 2
mm9_v1_chr16_+_49913305_49913369	0.990623	CDX1,2,4.p2	AK050387|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm9_v1_chr17_-_74242984_74243003	0.989617	CDX1,2,4.p2	BC003997|Xdh|22436|xanthine dehydrogenase
mm9_v1_chr1_+_176260648_176260661	0.989117	CDX1,2,4.p2	AK007658|1810030J14Rik|66289|RIKEN cDNA 1810030J14 gene	NM_025470|1810030J14Rik|66289|RIKEN cDNA 1810030J14 gene	AK007963|1810030J14Rik|66289|RIKEN cDNA 1810030J14 gene	BC024348|1810030J14Rik|66289|RIKEN cDNA 1810030J14 gene
mm9_v1_chr5_-_117838974_117839070	0.986875	CDX1,2,4.p2	AK011931|Rfc5|72151|replication factor C (activator 1) 5	AK171372|Rfc5|72151|replication factor C (activator 1) 5	BC089001|Rfc5|72151|replication factor C (activator 1) 5	NM_028128|Rfc5|72151|replication factor C (activator 1) 5	AK011489|Rfc5|72151|replication factor C (activator 1) 5	AK150036|Rfc5|72151|replication factor C (activator 1) 5	AK170211|Rfc5|72151|replication factor C (activator 1) 5
mm9_v1_chr9_+_120019498_120019516	0.986314	CDX1,2,4.p2	AK078385|Slc25a38|208638|solute carrier family 25, member 38	BC010801|Slc25a38|208638|solute carrier family 25, member 38	NM_144793|Slc25a38|208638|solute carrier family 25, member 38
mm9_v1_chr12_+_111805938_111806039	0.983425	CDX1,2,4.p2	AK047089|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	AK178752|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	AK196801|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	AK201559|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	AK211769|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr3_-_59024076_59024180	0.981784	CDX1,2,4.p2	AK014807|P2ry12|70839|purinergic receptor P2Y, G-protein coupled 12
mm9_v1_chr9_+_78296012_78296019	0.979969	CDX1,2,4.p2	NM_026658|Mto1|68291|mitochondrial translation optimization 1 homolog (S. cerevisiae)	AK019088|Mto1|68291|mitochondrial translation optimization 1 homolog (S. cerevisiae)	AK017573|Mto1|68291|mitochondrial translation optimization 1 homolog (S. cerevisiae)
mm9_v1_chr13_+_33753273_33753343	0.979778	CDX1,2,4.p2	AK136270|Serpinb6d|238568|serine (or cysteine) peptidase inhibitor, clade B, member 6d	NM_001076790|Serpinb6d|238568|serine (or cysteine) peptidase inhibitor, clade B, member 6d	BC147559|Serpinb6d|238568|serine (or cysteine) peptidase inhibitor, clade B, member 6d
mm9_v1_chr9_+_57545419_57545421	0.979141	CDX1,2,4.p2	NM_001136059|Cyp1a1|13076|cytochrome P450, family 1, subfamily a, polypeptide 1	Y00071|Cyp1a1|13076|cytochrome P450, family 1, subfamily a, polypeptide 1	K02588|Cyp1a1|13076|cytochrome P450, family 1, subfamily a, polypeptide 1
mm9_v1_chr4_-_58021900_58021995	0.974477	CDX1,2,4.p2	AY495589|Txndc8|67402|thioredoxin domain containing 8	BC049564|Txndc8|67402|thioredoxin domain containing 8	AK006683|Txndc8|67402|thioredoxin domain containing 8	AK015240|Txndc8|67402|thioredoxin domain containing 8	BC116763|Txndc8|67402|thioredoxin domain containing 8	BC116765|Txndc8|67402|thioredoxin domain containing 8	BC144839|Txndc8|67402|thioredoxin domain containing 8	BC144840|Txndc8|67402|thioredoxin domain containing 8	NM_026132|Txndc8|67402|thioredoxin domain containing 8
mm9_v1_chr14_+_56197282_56197411	0.972985	CDX1,2,4.p2	AK150708|Psme1|19186|proteasome (prosome, macropain) 28 subunit, alpha	AK150975|Psme1|19186|proteasome (prosome, macropain) 28 subunit, alpha	AK019390|Psme1|19186|proteasome (prosome, macropain) 28 subunit, alpha	BC088981|Psme1|19186|proteasome (prosome, macropain) 28 subunit, alpha	BC035549|Psme1|19186|proteasome (prosome, macropain) 28 subunit, alpha	D87909|Psme1|19186|proteasome (prosome, macropain) 28 subunit, alpha	NM_011189|Psme1|19186|proteasome (prosome, macropain) 28 subunit, alpha	AK008514|Psme1|19186|proteasome (prosome, macropain) 28 subunit, alpha	U60328|Psme1|19186|proteasome (prosome, macropain) 28 subunit, alpha
mm9_v1_chr9_+_78296020_78296030	0.970136	CDX1,2,4.p2	AF369902|Mto1|68291|mitochondrial translation optimization 1 homolog (S. cerevisiae)	BC063256|Mto1|68291|mitochondrial translation optimization 1 homolog (S. cerevisiae)
mm9_v1_chr2_-_91790504_91790533	0.969942	CDX1,2,4.p2	AK087503|Dgkz|104418|diacylglycerol kinase zeta	NM_001166597|Dgkz|104418|diacylglycerol kinase zeta
mm9_v1_chr7_-_112145415_112145415	0.966259	CDX1,2,4.p2	NM_146760|Olfr672|258755|olfactory receptor 672
mm9_v1_chr1_-_99666564_99666675	0.963493	CDX1,2,4.p2	AK087712|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK149804|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK129140|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK166095|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	NM_173760|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2
mm9_v1_chr11_+_81859212_81859265	0.961759	CDX1,2,4.p2	NM_013654|Ccl7|20306|chemokine (C-C motif) ligand 7	AK078827|Ccl7|20306|chemokine (C-C motif) ligand 7	BC061126|Ccl7|20306|chemokine (C-C motif) ligand 7	S71251|Ccl7|20306|chemokine (C-C motif) ligand 7	AF128193|Ccl7|20306|chemokine (C-C motif) ligand 7	AF128194|Ccl7|20306|chemokine (C-C motif) ligand 7	L04694|Ccl7|20306|chemokine (C-C motif) ligand 7	S50588|Ccl7|20306|chemokine (C-C motif) ligand 7	Z12297|Ccl7|20306|chemokine (C-C motif) ligand 7
mm9_v1_chr7_-_120532071_120532086	0.960834	CDX1,2,4.p2	BC099456|Pth|19226|parathyroid hormone	AK138677|Pth|19226|parathyroid hormone	NM_020623|Pth|19226|parathyroid hormone
mm9_v1_chr10_-_60610398_60610452	0.960565	CDX1,2,4.p2	NM_009163|Sgpl1|20397|sphingosine phosphate lyase 1
mm9_v1_chr9_+_123429291_123429490	0.959434	CDX1,2,4.p2	AK180316|Limd1|29806|LIM domains containing 1	AK212225|Limd1|29806|LIM domains containing 1	AK215267|Limd1|29806|LIM domains containing 1	AK215631|Limd1|29806|LIM domains containing 1	AK216846|Limd1|29806|LIM domains containing 1	AK220081|Limd1|29806|LIM domains containing 1	AK210611|Limd1|29806|LIM domains containing 1
mm9_v1_chr16_+_35938555_35938555	0.959031	CDX1,2,4.p2	BC070466|Parp9|80285|poly (ADP-ribose) polymerase family, member 9	NM_030253|Parp9|80285|poly (ADP-ribose) polymerase family, member 9
mm9_v1_chr2_-_164182242_164182242	0.955286	CDX1,2,4.p2	BC028509|Slpi|20568|secretory leukocyte peptidase inhibitor	NM_011414|Slpi|20568|secretory leukocyte peptidase inhibitor
mm9_v1_chr6_+_122407245_122407359	0.954412	CDX1,2,4.p2	AK159742|Rps27a|78294|ribosomal protein S27A
mm9_v1_chr6_+_57020888_57020888	0.951589	CDX1,2,4.p2	BC132241|Vmn1r9|171203|vomeronasal 1 receptor 9	BC132577|Vmn1r9|171203|vomeronasal 1 receptor 9	NM_134185|Vmn1r9|171203|vomeronasal 1 receptor 9
mm9_v1_chr5_-_128097687_128097794	0.951043	CDX1,2,4.p2	BC016233|Slc15a4|100561|solute carrier family 15, member 4	NM_133895|Slc15a4|100561|solute carrier family 15, member 4	AY050630|Slc15a4|100561|solute carrier family 15, member 4	AK048529|Slc15a4|100561|solute carrier family 15, member 4	AK154238|Slc15a4|100561|solute carrier family 15, member 4
mm9_v1_chr8_+_42416046_42416071	0.949852	CDX1,2,4.p2	AK040482|Pcm1|18536|pericentriolar material 1
mm9_v1_chr6_-_98877291_98877410	0.945648	CDX1,2,4.p2	
mm9_v1_chr2_-_70856430_70856434	0.944428	CDX1,2,4.p2	NM_001110512|Mettl8|228019|methyltransferase like 8	DQ230973|Mettl8|228019|methyltransferase like 8	DQ230974|Mettl8|228019|methyltransferase like 8
mm9_v1_chr2_+_29925959_29926154	0.943794	CDX1,2,4.p2	BC012508|Set|56086|SET nuclear oncogene
mm9_v1_chr17_+_37330836_37330896	0.942884	CDX1,2,4.p2	AK008116|Ubd|24108|ubiquitin D	NM_023137|Ubd|24108|ubiquitin D	AK008552|Ubd|24108|ubiquitin D	BC027627|Ubd|24108|ubiquitin D	BC036383|Ubd|24108|ubiquitin D	CT010257|Ubd|24108|ubiquitin D
mm9_v1_chr3_-_103546233_103546253	0.939611	CDX1,2,4.p2	AK031871|Hipk1|15257|homeodomain interacting protein kinase 1
mm9_v1_chr6_-_93863547_93863683	0.939469	CDX1,2,4.p2	AK163800|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083321|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	BC060273|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083320|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr8_+_22844965_22845008	0.939	CDX1,2,4.p2	NM_001024225|Defa24|503491|defensin, alpha, 24	S73391|Defa3|13237|defensin, alpha, 3	AY746429|Defa24|503491|defensin, alpha, 24	NM_007852|Defa6|13240|defensin, alpha, 6
mm9_v1_chr17_-_25934035_25934080	0.938112	CDX1,2,4.p2	BC132177|Metrn|70083|meteorin, glial cell differentiation regulator
mm9_v1_chr12_-_106236886_106236886	0.936287	CDX1,2,4.p2	BC099694|4831426I19Rik|212073|RIKEN cDNA 4831426I19 gene	NM_001042699|4831426I19Rik|212073|RIKEN cDNA 4831426I19 gene
mm9_v1_chr11_-_88816679_88816773	0.933449	CDX1,2,4.p2	AK050181|Scpep1|74617|serine carboxypeptidase 1	AK153485|Scpep1|74617|serine carboxypeptidase 1	BC021399|Scpep1|74617|serine carboxypeptidase 1	AF330052|Scpep1|74617|serine carboxypeptidase 1	AK153225|Scpep1|74617|serine carboxypeptidase 1	BC004847|Scpep1|74617|serine carboxypeptidase 1	AK014680|Scpep1|74617|serine carboxypeptidase 1	NM_029023|Scpep1|74617|serine carboxypeptidase 1
mm9_v1_chr6_+_29222664_29222676	0.932714	CDX1,2,4.p2	AK144676|2310016C08Rik|69573|RIKEN cDNA 2310016C08 gene	AK009377|2310016C08Rik|69573|RIKEN cDNA 2310016C08 gene
mm9_v1_chr10_-_30320470_30320554	0.932152	CDX1,2,4.p2	BC048703|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	AK014181|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	AK010722|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	AK032943|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	AF532979|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	NM_028604|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)
mm9_v1_chr3_-_94937886_94937954	0.932028	CDX1,2,4.p2	BC028867|Scnm1|69269|sodium channel modifier 1	AK013948|Scnm1|69269|sodium channel modifier 1	NM_001163573|Scnm1|69269|sodium channel modifier 1	NM_027013|Scnm1|69269|sodium channel modifier 1
mm9_v1_chr3_+_66789621_66789657	0.931434	CDX1,2,4.p2	AK168539|Rsrc1|66880|arginine/serine-rich coiled-coil 1	BC038303|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK004742|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK169340|Rsrc1|66880|arginine/serine-rich coiled-coil 1	BC027501|Rsrc1|66880|arginine/serine-rich coiled-coil 1	BC083123|Rsrc1|66880|arginine/serine-rich coiled-coil 1
mm9_v1_chr6_-_40981647_40981696	0.930927	CDX1,2,4.p2	AK007775|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene
mm9_v1_chr2_-_120389527_120389553	0.930572	CDX1,2,4.p2	BC025424|Zfp106|20402|zinc finger protein 106
mm9_v1_chr6_-_30340952_30341009	0.93036	CDX1,2,4.p2	BC037445|Zc3hc1|232679|zinc finger, C3HC type 1	AJ537495|Zc3hc1|232679|zinc finger, C3HC type 1	AK151694|Zc3hc1|232679|zinc finger, C3HC type 1	BC050141|Zc3hc1|232679|zinc finger, C3HC type 1	AK088527|Zc3hc1|232679|zinc finger, C3HC type 1	AK167465|Zc3hc1|232679|zinc finger, C3HC type 1	NM_172735|Zc3hc1|232679|zinc finger, C3HC type 1
mm9_v1_chr2_-_60591836_60591898	0.929619	CDX1,2,4.p2	AK159851|Rbms1|56878|RNA binding motif, single stranded interacting protein 1
mm9_v1_chr11_+_114952744_114952744	0.928099	CDX1,2,4.p2	AK046260|Rab37|58222|RAB37, member of RAS oncogene family	AK138293|Rab37|58222|RAB37, member of RAS oncogene family	NM_001163753|Rab37|58222|RAB37, member of RAS oncogene family
mm9_v1_chr3_-_95161071_95161127	0.925307	CDX1,2,4.p2	AK135833|Setdb1|84505|SET domain, bifurcated 1	BC079537|Setdb1|84505|SET domain, bifurcated 1	AF091628|Setdb1|84505|SET domain, bifurcated 1	AF546078|Setdb1|84505|SET domain, bifurcated 1	AY091600|Setdb1|84505|SET domain, bifurcated 1	BC060173|Setdb1|84505|SET domain, bifurcated 1	AK132202|Setdb1|84505|SET domain, bifurcated 1	NM_001163641|Setdb1|84505|SET domain, bifurcated 1	NM_001163642|Setdb1|84505|SET domain, bifurcated 1	NM_018877|Setdb1|84505|SET domain, bifurcated 1
mm9_v1_chr2_+_17976897_17976897	0.923102	CDX1,2,4.p2	BC070475|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	NM_010804|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm9_v1_chr5_+_122298977_122299040	0.921488	CDX1,2,4.p2	AK039192|Fam109a|231717|family with sequence similarity 109, member A	AK033618|Fam109a|231717|family with sequence similarity 109, member A	NM_175474|Fam109a|231717|family with sequence similarity 109, member A
mm9_v1_chr7_-_23350361_23350361	0.921149	CDX1,2,4.p2	NM_001167162|Gm4201|100043061|predicted gene 4201	NM_001167163|Gm4141|100042976|predicted gene 4141
mm9_v1_chr1_-_157881946_157881946	0.919095	CDX1,2,4.p2	NM_001160019|Tor1aip1|208263|torsin A interacting protein 1
mm9_v1_chr10_+_21015762_21015859	0.916199	CDX1,2,4.p2	NM_001042593|Hbs1l|56422|Hbs1-like (S. cerevisiae)	NM_001145209|Hbs1l|56422|Hbs1-like (S. cerevisiae)	NM_019702|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK006626|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK146678|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK166140|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK168671|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK169281|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK012856|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK173091|Hbs1l|56422|Hbs1-like (S. cerevisiae)	BC085235|Hbs1l|56422|Hbs1-like (S. cerevisiae)	BC010251|Hbs1l|56422|Hbs1-like (S. cerevisiae)
mm9_v1_chr2_-_163450863_163450871	0.914166	CDX1,2,4.p2	AK003471|Serinc3|26943|serine incorporator 3
mm9_v1_chr3_-_59066744_59066767	0.912883	CDX1,2,4.p2	BC025428|P2ry12|70839|purinergic receptor P2Y, G-protein coupled 12	AK013804|P2ry12|70839|purinergic receptor P2Y, G-protein coupled 12	NM_027571|P2ry12|70839|purinergic receptor P2Y, G-protein coupled 12
mm9_v1_chr7_-_106387077_106387128	0.909854	CDX1,2,4.p2	AY157609|Mogat2|233549|monoacylglycerol O-acyltransferase 2	AK049560|Mogat2|233549|monoacylglycerol O-acyltransferase 2	BC052831|Mogat2|233549|monoacylglycerol O-acyltransferase 2	NM_177448|Mogat2|233549|monoacylglycerol O-acyltransferase 2	AK133854|Mogat2|233549|monoacylglycerol O-acyltransferase 2
mm9_v1_chr6_-_18059054_18059060	0.907477	CDX1,2,4.p2	AF459789|Asz1|74068|ankyrin repeat, SAM and basic leucine zipper domain containing 1	AK016595|Asz1|74068|ankyrin repeat, SAM and basic leucine zipper domain containing 1	BC058859|Asz1|74068|ankyrin repeat, SAM and basic leucine zipper domain containing 1	NM_023729|Asz1|74068|ankyrin repeat, SAM and basic leucine zipper domain containing 1
mm9_v1_chr1_+_62749850_62750115	0.901681	CDX1,2,4.p2	NM_001077403|Nrp2|18187|neuropilin 2	NM_001077404|Nrp2|18187|neuropilin 2	NM_001077405|Nrp2|18187|neuropilin 2	NM_001077406|Nrp2|18187|neuropilin 2	NM_001077407|Nrp2|18187|neuropilin 2	NM_010939|Nrp2|18187|neuropilin 2	AK149643|Nrp2|18187|neuropilin 2	AK051873|Nrp2|18187|neuropilin 2
mm9_v1_chr7_+_22134391_22134391	0.900647	CDX1,2,4.p2	NM_001166739|Vmn1r128|667199|vomeronasal 1 receptor 128
mm9_v1_chr2_+_136725086_136725086	0.899835	CDX1,2,4.p2	AK136226|2210009G21Rik|74243|RIKEN cDNA 2210009G21 gene	NM_001038641|2210009G21Rik|74243|RIKEN cDNA 2210009G21 gene
mm9_v1_chr3_-_40659202_40659202	0.898715	CDX1,2,4.p2	AK077188|Gm10731|100039043|predicted gene 10731	NM_001129886|Gm10731|100039043|predicted gene 10731
mm9_v1_chr3_-_115832278_115832299	0.8977	CDX1,2,4.p2	CT010373|Vcam1|22329|vascular cell adhesion molecule 1	X67783|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chr11_+_72609717_72609729	0.895838	CDX1,2,4.p2	AK158924|Zzef1|195018|zinc finger, ZZ-type with EF hand domain 1	NM_001045536|Zzef1|195018|zinc finger, ZZ-type with EF hand domain 1
mm9_v1_chr11_-_69485800_69485832	0.891084	CDX1,2,4.p2	BC099392|Eif4a1|13681|eukaryotic translation initiation factor 4A1	BC012282|Eif4a1|13681|eukaryotic translation initiation factor 4A1	BC049915|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169030|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK166527|Eif4a1|13681|eukaryotic translation initiation factor 4A1	X03039|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK159643|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167205|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK168697|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169156|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK011529|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK077429|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK135752|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK135994|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK144850|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK146464|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK166439|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167003|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167083|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167988|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK168780|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169023|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169057|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169279|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK166572|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK088124|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK145375|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK145508|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK146424|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK152694|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK162017|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK166674|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167196|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167906|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK010644|Eif4a1|13681|eukaryotic translation initiation factor 4A1
mm9_v1_chr3_+_66789587_66789619	0.888748	CDX1,2,4.p2	AK012100|Rsrc1|66880|arginine/serine-rich coiled-coil 1	NM_025822|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK005242|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK043731|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK045433|Rsrc1|66880|arginine/serine-rich coiled-coil 1
mm9_v1_chr11_-_109334465_109334613	0.88426	CDX1,2,4.p2	AK170472|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	BC017129|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	NM_134038|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm9_v1_chr10_-_63552994_63553028	0.883462	CDX1,2,4.p2	AK036366|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK163753|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035773|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035858|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035882|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	NM_178678|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK032485|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK036180|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3
mm9_v1_chr7_-_3567703_3567758	0.882308	CDX1,2,4.p2	BC137776|Oscar|232790|osteoclast associated receptor	AF391159|Oscar|232790|osteoclast associated receptor	AF391161|Oscar|232790|osteoclast associated receptor	NM_175632|Oscar|232790|osteoclast associated receptor	AF391160|Oscar|232790|osteoclast associated receptor
mm9_v1_chr6_+_57063418_57063418	0.882115	CDX1,2,4.p2	NM_053231|Vmn1r10|113858|vomeronasal 1 receptor 10
mm9_v1_chr14_+_32978720_32978774	0.881549	CDX1,2,4.p2	AK156999|Ncoa4|27057|nuclear receptor coactivator 4
mm9_v1_chr3_+_69525922_69526018	0.878547	CDX1,2,4.p2	AK145248|Nmd3|97112|NMD3 homolog (S. cerevisiae)	AK088667|Nmd3|97112|NMD3 homolog (S. cerevisiae)	BC003842|Nmd3|97112|NMD3 homolog (S. cerevisiae)	NM_133787|Nmd3|97112|NMD3 homolog (S. cerevisiae)	AK198106|Nmd3|97112|NMD3 homolog (S. cerevisiae)	AK166283|Nmd3|97112|NMD3 homolog (S. cerevisiae)	AK143289|Nmd3|97112|NMD3 homolog (S. cerevisiae)
mm9_v1_chr7_+_23197249_23197249	0.876426	CDX1,2,4.p2	AF324872|Vmn1r148|81011|vomeronasal 1 receptor 148	NM_030736|Vmn1r148|81011|vomeronasal 1 receptor 148
mm9_v1_chr8_-_87364463_87364577	0.876312	CDX1,2,4.p2	X92410|Rad23a|19358|RAD23a homolog (S. cerevisiae)	BC138684|Rad23a|19358|RAD23a homolog (S. cerevisiae)	BC145372|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK009733|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK038300|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK161875|Rad23a|19358|RAD23a homolog (S. cerevisiae)	NM_009010|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK045224|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK165467|Rad23a|19358|RAD23a homolog (S. cerevisiae)
mm9_v1_chr13_-_58227306_58227430	0.875275	CDX1,2,4.p2	BC048746|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr19_+_55328356_55328506	0.874477	CDX1,2,4.p2	AK151378|Acsl5|433256|acyl-CoA synthetase long-chain family member 5	BC031544|Acsl5|433256|acyl-CoA synthetase long-chain family member 5	AK161024|Acsl5|433256|acyl-CoA synthetase long-chain family member 5
mm9_v1_chr17_-_46290473_46290486	0.872617	CDX1,2,4.p2	AK002377|Mad2l1bp|66591|MAD2L1 binding protein
mm9_v1_chr13_-_101603253_101603421	0.864883	CDX1,2,4.p2	AF461761|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	BC033452|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	AK090176|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	AK088004|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	AK051183|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	NM_022885|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5
mm9_v1_chr6_-_90612275_90612375	0.860114	CDX1,2,4.p2	AK044711|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr16_+_20535519_20535657	0.855677	CDX1,2,4.p2	AK146517|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK168414|Ap2m1|11773|adaptor protein complex AP-2, mu1	NM_009679|Ap2m1|11773|adaptor protein complex AP-2, mu1	U27106|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK159534|Ap2m1|11773|adaptor protein complex AP-2, mu1	BC056352|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK150358|Ap2m1|11773|adaptor protein complex AP-2, mu1	BC089342|Ap2m1|11773|adaptor protein complex AP-2, mu1	BC094510|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK143586|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK141862|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK172889|Ap2m1|11773|adaptor protein complex AP-2, mu1
mm9_v1_chr11_-_5607667_5607715	0.855426	CDX1,2,4.p2	BC029262|Mrps24|64660|mitochondrial ribosomal protein S24	AK010590|Mrps24|64660|mitochondrial ribosomal protein S24	AK003117|Mrps24|64660|mitochondrial ribosomal protein S24	AK007338|Mrps24|64660|mitochondrial ribosomal protein S24	AK014099|Mrps24|64660|mitochondrial ribosomal protein S24	AK012461|Mrps24|64660|mitochondrial ribosomal protein S24	NM_026080|Mrps24|64660|mitochondrial ribosomal protein S24
mm9_v1_chr3_+_95392855_95392908	0.855186	CDX1,2,4.p2	NM_001177669|Golph3l|229593|golgi phosphoprotein 3-like	NM_001177670|Golph3l|229593|golgi phosphoprotein 3-like	NM_146133|Golph3l|229593|golgi phosphoprotein 3-like	BC047147|Golph3l|229593|golgi phosphoprotein 3-like	AK008434|Golph3l|229593|golgi phosphoprotein 3-like	AK089547|Golph3l|229593|golgi phosphoprotein 3-like	AK160454|Golph3l|229593|golgi phosphoprotein 3-like	AK169724|Golph3l|229593|golgi phosphoprotein 3-like	AK167675|Golph3l|229593|golgi phosphoprotein 3-like
mm9_v1_chr6_+_41304103_41304177	0.854399	CDX1,2,4.p2	BC138698|Try10|436522|trypsin 10	BC146017|Try10|436522|trypsin 10	NM_001038996|Try10|436522|trypsin 10	AK133516|Try10|436522|trypsin 10
mm9_v1_chr9_+_50924105_50924222	0.850256	CDX1,2,4.p2	AB050983|Btg4|56057|B-cell translocation gene 4	AK136149|Btg4|56057|B-cell translocation gene 4	AK136185|Btg4|56057|B-cell translocation gene 4	NM_019493|Btg4|56057|B-cell translocation gene 4	AK136041|Btg4|56057|B-cell translocation gene 4	AK136124|Btg4|56057|B-cell translocation gene 4	AK162122|Btg4|56057|B-cell translocation gene 4	AK163407|Btg4|56057|B-cell translocation gene 4	BC066811|Btg4|56057|B-cell translocation gene 4	AJ005120|Btg4|56057|B-cell translocation gene 4
mm9_v1_chr6_+_123072679_123072707	0.848637	CDX1,2,4.p2	BC096565|Clec4a2|26888|C-type lectin domain family 4, member a2	NM_001170332|Clec4a2|26888|C-type lectin domain family 4, member a2
mm9_v1_chr6_+_86321479_86321568	0.848006	CDX1,2,4.p2	BC051470|Snrpg|68011|small nuclear ribonucleoprotein polypeptide G	AK013235|Snrpg|68011|small nuclear ribonucleoprotein polypeptide G	NM_026506|Snrpg|68011|small nuclear ribonucleoprotein polypeptide G	AK011129|Snrpg|68011|small nuclear ribonucleoprotein polypeptide G	AK012802|Snrpg|68011|small nuclear ribonucleoprotein polypeptide G	BC094411|Snrpg|68011|small nuclear ribonucleoprotein polypeptide G	BC027499|Snrpg|68011|small nuclear ribonucleoprotein polypeptide G	AK017852|Snrpg|68011|small nuclear ribonucleoprotein polypeptide G
mm9_v1_chr9_-_61794540_61794605	0.846054	CDX1,2,4.p2	AK013939|Kif23|71819|kinesin family member 23	AK164409|Kif23|71819|kinesin family member 23	BC047273|Kif23|71819|kinesin family member 23	BC003363|Kif23|71819|kinesin family member 23	AK030771|Kif23|71819|kinesin family member 23	NM_024245|Kif23|71819|kinesin family member 23
mm9_v1_chr16_-_48772068_48772250	0.845587	CDX1,2,4.p2	BC104350|Trat1|77647|T cell receptor associated transmembrane adaptor 1	BC104351|Trat1|77647|T cell receptor associated transmembrane adaptor 1	NM_198297|Trat1|77647|T cell receptor associated transmembrane adaptor 1	AJ297969|Trat1|77647|T cell receptor associated transmembrane adaptor 1	AK138735|Trat1|77647|T cell receptor associated transmembrane adaptor 1	AK030807|Trat1|77647|T cell receptor associated transmembrane adaptor 1
mm9_v1_chr14_-_49686341_49686379	0.84405	CDX1,2,4.p2	NM_207214|Exoc5|105504|exocyst complex component 5
mm9_v1_chr4_-_74924159_74924210	0.843398	CDX1,2,4.p2	AK003640|3110001D03Rik|66928|RIKEN cDNA 3110001D03 gene	BC022621|3110001D03Rik|66928|RIKEN cDNA 3110001D03 gene	NM_025849|3110001D03Rik|66928|RIKEN cDNA 3110001D03 gene	AK013937|3110001D03Rik|66928|RIKEN cDNA 3110001D03 gene
mm9_v1_chr6_-_130181634_130181704	0.84257	CDX1,2,4.p2	AF288375|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	EU429321|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	BC099859|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	BC099860|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	BC099862|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	S78689|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	AF074457|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	AF283248|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	AF283249|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	AF283253|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	AF307945|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	AF307946|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	U12890|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	AF288376|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	AK143240|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	BC140984|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	BC130251|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	NM_014194|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7	U10094|Klra7|16638|killer cell lectin-like receptor, subfamily A, member 7
mm9_v1_chr7_+_20104079_20104079	0.842369	CDX1,2,4.p2	BC118925|Nkpd1|69547|NTPase, KAP family P-loop domain containing 1	NM_027116|Nkpd1|69547|NTPase, KAP family P-loop domain containing 1
mm9_v1_chr1_+_182837982_182838044	0.842041	CDX1,2,4.p2	AK187139|Pycr2|69051|pyrroline-5-carboxylate reductase family, member 2
mm9_v1_chr4_+_73888400_73888400	0.840849	CDX1,2,4.p2	BC042424|Kdm4c|76804|lysine (K)-specific demethylase 4C	NM_001172095|Kdm4c|76804|lysine (K)-specific demethylase 4C
mm9_v1_chr6_-_56975266_56975266	0.839983	CDX1,2,4.p2	NM_001166710|Vmn1r7|434016|vomeronasal 1 receptor 7
mm9_v1_chr12_-_86311718_86311851	0.838685	CDX1,2,4.p2	BC057351|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	BC079590|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK147878|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK154529|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK147491|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	NM_178065|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene
mm9_v1_chr17_-_46290499_46290503	0.836697	CDX1,2,4.p2	AK156569|Mad2l1bp|66591|MAD2L1 binding protein	NM_025649|Mad2l1bp|66591|MAD2L1 binding protein
mm9_v1_chr10_-_126467848_126467902	0.834111	CDX1,2,4.p2	BC034286|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK020437|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK169164|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK018591|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK141183|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK012240|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK171656|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK172112|Tsfm|66399|Ts translation elongation factor, mitochondrial	BC057904|Tsfm|66399|Ts translation elongation factor, mitochondrial	NM_025537|Tsfm|66399|Ts translation elongation factor, mitochondrial
mm9_v1_chr9_-_40792541_40792554	0.833281	CDX1,2,4.p2	AK163744|Crtam|54698|cytotoxic and regulatory T cell molecule
mm9_v1_chr8_+_73895190_73895211	0.832438	CDX1,2,4.p2	AK163762|Ocel1|77090|occludin/ELL domain containing 1	NM_029865|Ocel1|77090|occludin/ELL domain containing 1
mm9_v1_chr4_+_101927543_101927649	0.831929	CDX1,2,4.p2	NM_019840|Pde4b|18578|phosphodiesterase 4B, cAMP specific	AF208023|Pde4b|18578|phosphodiesterase 4B, cAMP specific	AJ297397|Pde4b|18578|phosphodiesterase 4B, cAMP specific	AK031977|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr2_-_165225861_165225904	0.830602	CDX1,2,4.p2	BC020160|4833422F24Rik|74614|RIKEN cDNA 4833422F24 gene	AK014751|4833422F24Rik|74614|RIKEN cDNA 4833422F24 gene	NM_029021|4833422F24Rik|74614|RIKEN cDNA 4833422F24 gene	AK042271|4833422F24Rik|74614|RIKEN cDNA 4833422F24 gene
mm9_v1_chr4_-_147242501_147242654	0.830291	CDX1,2,4.p2	BC017525|Miip|28010|migration and invasion inhibitory protein	AK133976|Miip|28010|migration and invasion inhibitory protein	AK170224|Miip|28010|migration and invasion inhibitory protein	BC024069|Miip|28010|migration and invasion inhibitory protein
mm9_v1_chr18_+_78546492_78546501	0.828507	CDX1,2,4.p2	BC158101|Gm6133|620155|60S ribosomal protein L17 pseudogene
mm9_v1_chr9_-_39066263_39066264	0.827288	CDX1,2,4.p2	NM_146506|Olfr945|258499|olfactory receptor 945	BC128004|Olfr945|258499|olfactory receptor 945
mm9_v1_chr7_-_111299000_111299069	0.826369	CDX1,2,4.p2	BC111901|Ubqlnl|244179|ubiquilin-like	BC113134|Ubqlnl|244179|ubiquilin-like	AK076645|Ubqlnl|244179|ubiquilin-like	NM_198624|Ubqlnl|244179|ubiquilin-like
mm9_v1_chr7_-_21095882_21095882	0.826083	CDX1,2,4.p2	NM_001166737|Vmn1r103|667129|vomeronasal 1 receptor 103
mm9_v1_chr14_+_115491436_115491496	0.824831	CDX1,2,4.p2	AK134807|Gpc5|103978|glypican 5	NM_175500|Gpc5|103978|glypican 5	AK038547|Gpc5|103978|glypican 5	AK084223|Gpc5|103978|glypican 5
mm9_v1_chr7_+_138703863_138703894	0.824154	CDX1,2,4.p2	BC025089|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)
mm9_v1_chr11_-_69495447_69495585	0.823422	CDX1,2,4.p2	NM_030702|Senp3|80886|SUMO/sentrin specific peptidase 3	AK088608|Senp3|80886|SUMO/sentrin specific peptidase 3	NM_001163571|Senp3|80886|SUMO/sentrin specific peptidase 3
mm9_v1_chr1_+_175561105_175561244	0.821332	CDX1,2,4.p2	AK150817|Pyhin1|236312|pyrin and HIN domain family, member 1	BC107378|Pyhin1|236312|pyrin and HIN domain family, member 1	BC107379|Pyhin1|236312|pyrin and HIN domain family, member 1	AK040884|Pyhin1|236312|pyrin and HIN domain family, member 1
mm9_v1_chr1_+_129702056_129702170	0.820953	CDX1,2,4.p2	AK033697|Ccnt2|72949|cyclin T2
mm9_v1_chr2_-_7317513_7317626	0.819228	CDX1,2,4.p2	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr6_-_130143018_130143129	0.818708	CDX1,2,4.p2	BC116376|Klra6|16637|killer cell lectin-like receptor, subfamily A, member 6	BC131790|Klra5|16636|killer cell lectin-like receptor, subfamily A, member 5	AF237686|Klra9|16640|killer cell lectin-like receptor subfamily A, member 9	NM_010651|Klra9|16640|killer cell lectin-like receptor subfamily A, member 9	U49865|Klra9|16640|killer cell lectin-like receptor subfamily A, member 9	U49866|Klra9|16640|killer cell lectin-like receptor subfamily A, member 9	U49867|Klra9|16640|killer cell lectin-like receptor subfamily A, member 9
mm9_v1_chr7_-_99889932_99889979	0.818697	CDX1,2,4.p2	AK014157|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK051992|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK018467|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK019505|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK084903|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK084084|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK145781|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene
mm9_v1_chr14_+_63756868_63756897	0.818518	CDX1,2,4.p2	AK192818|Ctsb|13030|cathepsin B	AK196522|Ctsb|13030|cathepsin B
mm9_v1_chr6_+_128942978_128943066	0.817512	CDX1,2,4.p2	BC051485|BC064078|408064|cDNA sequence BC064078	BC016205|BC064078|408064|cDNA sequence BC064078	BC017132|BC064078|408064|cDNA sequence BC064078	BC025095|BC064078|408064|cDNA sequence BC064078	BC038635|BC064078|408064|cDNA sequence BC064078	BC096405|BC064078|408064|cDNA sequence BC064078	BC064078|BC064078|408064|cDNA sequence BC064078	AK134020|BC064078|408064|cDNA sequence BC064078
mm9_v1_chr9_-_57468501_57468580	0.815342	CDX1,2,4.p2	AB211986|Lman1l|235416|lectin, mannose-binding 1 like	BC020188|Lman1l|235416|lectin, mannose-binding 1 like	NM_199222|Lman1l|235416|lectin, mannose-binding 1 like
mm9_v1_chr1_-_39608739_39608803	0.814945	CDX1,2,4.p2	AK020327|Rnf149|67702|ring finger protein 149
mm9_v1_chr11_-_20612281_20612323	0.813788	CDX1,2,4.p2	AK150458|Aftph|216549|aftiphilin	AK152308|Aftph|216549|aftiphilin	AK152487|Aftph|216549|aftiphilin	AK161532|Aftph|216549|aftiphilin
mm9_v1_chr5_+_104868321_104868417	0.812998	CDX1,2,4.p2	BC014284|Spp1|20750|secreted phosphoprotein 1
mm9_v1_chr4_+_134479583_134479637	0.811109	CDX1,2,4.p2	BC056986|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	BC046231|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed
mm9_v1_chr7_+_19967358_19967392	0.810834	CDX1,2,4.p2	AK141692|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK082323|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK145969|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK082761|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	NM_007949|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	BC034517|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2
mm9_v1_chr16_-_35871459_35871582	0.810762	CDX1,2,4.p2	AK005563|Parp14|547253|poly (ADP-ribose) polymerase family, member 14	AK089685|Parp14|547253|poly (ADP-ribose) polymerase family, member 14	AK156483|Parp14|547253|poly (ADP-ribose) polymerase family, member 14	AK156593|Parp14|547253|poly (ADP-ribose) polymerase family, member 14	NM_001039530|Parp14|547253|poly (ADP-ribose) polymerase family, member 14	BC138874|Parp14|547253|poly (ADP-ribose) polymerase family, member 14	BC145452|Parp14|547253|poly (ADP-ribose) polymerase family, member 14
mm9_v1_chr17_-_46290450_46290465	0.810562	CDX1,2,4.p2	AK004224|Mad2l1bp|66591|MAD2L1 binding protein	AK007974|Mad2l1bp|66591|MAD2L1 binding protein	BC005768|Mad2l1bp|66591|MAD2L1 binding protein	AK220322|Mad2l1bp|66591|MAD2L1 binding protein
mm9_v1_chr9_-_7835107_7835268	0.810139	CDX1,2,4.p2	BC145985|Birc2|11797|baculoviral IAP repeat-containing 2	NM_007465|Birc2|11797|baculoviral IAP repeat-containing 2	U88909|Birc2|11797|baculoviral IAP repeat-containing 2	BC033480|Birc2|11797|baculoviral IAP repeat-containing 2
mm9_v1_chr7_+_53693190_53693196	0.809318	CDX1,2,4.p2	AK079373|Kcnc1|16502|potassium voltage gated channel, Shaw-related subfamily, member 1
mm9_v1_chr10_+_77324719_77324719	0.808587	CDX1,2,4.p2	NM_001101631|Gm3285|100041351|predicted gene 3285
mm9_v1_chr4_+_153331341_153331408	0.808184	CDX1,2,4.p2	AK039812|A430005L14Rik|97159|RIKEN cDNA A430005L14 gene	BC052148|A430005L14Rik|97159|RIKEN cDNA A430005L14 gene	NM_001163019|A430005L14Rik|97159|RIKEN cDNA A430005L14 gene	NM_175287|A430005L14Rik|97159|RIKEN cDNA A430005L14 gene
mm9_v1_chr10_-_14438019_14438019	0.804121	CDX1,2,4.p2	AK018698|Gje1|76743|gap junction protein, epsilon 1	NM_029722|Gje1|76743|gap junction protein, epsilon 1
mm9_v1_chr3_+_88520743_88520881	0.798753	CDX1,2,4.p2	NM_001163310|Rit1|19769|Ras-like without CAAX 1	NM_009069|Rit1|19769|Ras-like without CAAX 1	AK014126|Rit1|19769|Ras-like without CAAX 1	AK164196|Rit1|19769|Ras-like without CAAX 1	AK005357|Rit1|19769|Ras-like without CAAX 1	AK168254|Rit1|19769|Ras-like without CAAX 1	BC012694|Rit1|19769|Ras-like without CAAX 1	AK018785|Rit1|19769|Ras-like without CAAX 1	U71205|Rit1|19769|Ras-like without CAAX 1
mm9_v1_chr7_-_16807341_16807387	0.797046	CDX1,2,4.p2	BC080856|Dhx34|71723|DEAH (Asp-Glu-Ala-His) box polypeptide 34	AK129062|Dhx34|71723|DEAH (Asp-Glu-Ala-His) box polypeptide 34	AK004733|Dhx34|71723|DEAH (Asp-Glu-Ala-His) box polypeptide 34	NM_027883|Dhx34|71723|DEAH (Asp-Glu-Ala-His) box polypeptide 34
mm9_v1_chr7_-_4349321_4349345	0.796074	CDX1,2,4.p2	AK079424|Gp6|243816|glycoprotein 6 (platelet)	BC138170|Gp6|243816|glycoprotein 6 (platelet)	BC145172|Gp6|243816|glycoprotein 6 (platelet)	NM_001163014|Gp6|243816|glycoprotein 6 (platelet)
mm9_v1_chr1_+_58852217_58852287	0.794679	CDX1,2,4.p2	AK146758|Casp8|12370|caspase 8	AK168812|Casp8|12370|caspase 8	NM_009812|Casp8|12370|caspase 8	BC006737|Casp8|12370|caspase 8
mm9_v1_chr9_-_105999021_105999113	0.794152	CDX1,2,4.p2	AM231151|Col6a4|68553|collagen, type VI, alpha 4	NM_026763|Col6a4|68553|collagen, type VI, alpha 4	AB370265|Col6a4|68553|collagen, type VI, alpha 4
mm9_v1_chr11_-_106860803_106860838	0.794103	CDX1,2,4.p2	NM_010655|Kpna2|16647|karyopherin (importin) alpha 2
mm9_v1_chr8_-_85694622_85694694	0.793513	CDX1,2,4.p2	
mm9_v1_chr6_+_29222698_29222749	0.792181	CDX1,2,4.p2	BC083056|2310016C08Rik|69573|RIKEN cDNA 2310016C08 gene	AF141311|2310016C08Rik|69573|RIKEN cDNA 2310016C08 gene
mm9_v1_chr10_-_31134240_31134240	0.791783	CDX1,2,4.p2	NM_011509|Gm3258|100041294|predicted gene 3258
mm9_v1_chr5_-_21371421_21371421	0.790602	CDX1,2,4.p2	AF529192|Slc26a5|80979|solute carrier family 26, member 5	NM_030727|Slc26a5|80979|solute carrier family 26, member 5
mm9_v1_chr19_-_12576485_12576634	0.788697	CDX1,2,4.p2	NM_172442|Dtx4|207521|deltex 4 homolog (Drosophila)
mm9_v1_chr6_+_78355148_78355151	0.787519	CDX1,2,4.p2	NM_009043|Reg2|19693|regenerating islet-derived 2	AK008196|Reg2|19693|regenerating islet-derived 2
mm9_v1_chr10_+_111409750_111409849	0.786273	CDX1,2,4.p2	NM_178610|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK012108|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK045526|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK036447|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK146926|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC089510|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK011972|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK030560|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK032472|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK041854|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK168675|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC094236|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr9_+_3532302_3532353	0.784406	CDX1,2,4.p2	NM_001033322|Gucy1a2|234889|guanylate cyclase 1, soluble, alpha 2
mm9_v1_chr6_+_29222487_29222646	0.780545	CDX1,2,4.p2	NM_001190461|2310016C08Rik|69573|RIKEN cDNA 2310016C08 gene	NM_023516|2310016C08Rik|69573|RIKEN cDNA 2310016C08 gene
mm9_v1_chr2_-_33286793_33286890	0.779611	CDX1,2,4.p2	NM_001085507|Zbtb34|241311|zinc finger and BTB domain containing 34
mm9_v1_chrX_+_104344792_104344792	0.777688	CDX1,2,4.p2	NM_001122595|A630033H20Rik|213438|RIKEN cDNA A630033H20 gene
mm9_v1_chr4_+_40419212_40419212	0.776737	CDX1,2,4.p2	AK044217|Tmem215|320500|transmembrane protein 215	AK044627|Tmem215|320500|transmembrane protein 215	NM_177175|Tmem215|320500|transmembrane protein 215
mm9_v1_chr11_+_80671864_80671927	0.774381	CDX1,2,4.p2	AK006357|Spaca3|75622|sperm acrosome associated 3	BC100503|Spaca3|75622|sperm acrosome associated 3	NM_029367|Spaca3|75622|sperm acrosome associated 3	AY572448|Spaca3|75622|sperm acrosome associated 3
mm9_v1_chr7_+_5626205_5626228	0.774238	CDX1,2,4.p2	AF324867|Vmn1r62|81016|vomeronasal 1 receptor 62	NM_030741|Vmn1r62|81016|vomeronasal 1 receptor 62	BC113757|Vmn1r62|81016|vomeronasal 1 receptor 62
mm9_v1_chr3_-_115832605_115832605	0.772829	CDX1,2,4.p2	BC029823|Vcam1|22329|vascular cell adhesion molecule 1	NM_011693|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chr11_-_118025722_118025748	0.771221	CDX1,2,4.p2	AK210975|Cyth1|19157|cytohesin 1
mm9_v1_chr6_+_123212210_123212220	0.76972	CDX1,2,4.p2	BC099471|Clec4d|17474|C-type lectin domain family 4, member d	AK150926|Clec4d|17474|C-type lectin domain family 4, member d
mm9_v1_chr16_-_98169926_98169967	0.769308	CDX1,2,4.p2	AK017406|Zfp295|114565|zinc finger protein 295	AK084920|Zfp295|114565|zinc finger protein 295
mm9_v1_chr7_+_22880538_22880538	0.768484	CDX1,2,4.p2	NM_001122682|Vmn1r132|100043604|vomeronasal 1 receptor 132
mm9_v1_chr11_-_53520771_53520798	0.767219	CDX1,2,4.p2	BC058180|Rad50|19360|RAD50 homolog (S. cerevisiae)	U66887|Rad50|19360|RAD50 homolog (S. cerevisiae)
mm9_v1_chr1_+_177562321_177562338	0.765938	CDX1,2,4.p2	BC014683|Kmo|98256|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	NM_133809|Kmo|98256|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
mm9_v1_chr1_-_153317422_153317565	0.765455	CDX1,2,4.p2	AK211660|Rnf2|19821|ring finger protein 2
mm9_v1_chr2_-_13466273_13466302	0.765398	CDX1,2,4.p2	AF045889|Trdmt1|13434|tRNA aspartic acid methyltransferase 1	AF012129|Trdmt1|13434|tRNA aspartic acid methyltransferase 1	AK050403|Trdmt1|13434|tRNA aspartic acid methyltransferase 1	AK029136|Trdmt1|13434|tRNA aspartic acid methyltransferase 1	BC087892|Trdmt1|13434|tRNA aspartic acid methyltransferase 1	NM_010067|Trdmt1|13434|tRNA aspartic acid methyltransferase 1
mm9_v1_chr2_+_162758440_162758589	0.765155	CDX1,2,4.p2	AK051608|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr4_-_150421459_150421590	0.765099	CDX1,2,4.p2	
mm9_v1_chr16_+_17980657_17980657	0.762316	CDX1,2,4.p2	NM_016983|Vpreb2|22363|pre-B lymphocyte gene 2
mm9_v1_chr5_-_104421860_104421906	0.761266	CDX1,2,4.p2	AK033054|Hsd17b11|114664|hydroxysteroid (17-beta) dehydrogenase 11
mm9_v1_chr2_+_153171730_153171874	0.760082	CDX1,2,4.p2	AK122413|Asxl1|228790|additional sex combs like 1 (Drosophila)	NM_001039939|Asxl1|228790|additional sex combs like 1 (Drosophila)
mm9_v1_chr13_-_46788898_46788932	0.757559	CDX1,2,4.p2	
mm9_v1_chr8_+_4349587_4349614	0.755587	CDX1,2,4.p2	AK131875|Ccl25|20300|chemokine (C-C motif) ligand 25	NM_009138|Ccl25|20300|chemokine (C-C motif) ligand 25	DQ158256|Ccl25|20300|chemokine (C-C motif) ligand 25	AK134138|Ccl25|20300|chemokine (C-C motif) ligand 25	AJ249480|Ccl25|20300|chemokine (C-C motif) ligand 25
mm9_v1_chr15_+_80085613_80085722	0.754905	CDX1,2,4.p2	AK003001|Atf4|11911|activating transcription factor 4	NM_009716|Atf4|11911|activating transcription factor 4	BC085169|Atf4|11911|activating transcription factor 4
mm9_v1_chr8_-_11635748_11635782	0.754068	CDX1,2,4.p2	AK031808|Ankrd10|102334|ankyrin repeat domain 10	AK033623|Ankrd10|102334|ankyrin repeat domain 10	AK038156|Ankrd10|102334|ankyrin repeat domain 10	AK042500|Ankrd10|102334|ankyrin repeat domain 10	AK081754|Ankrd10|102334|ankyrin repeat domain 10	AK082875|Ankrd10|102334|ankyrin repeat domain 10	AK084456|Ankrd10|102334|ankyrin repeat domain 10	AK143253|Ankrd10|102334|ankyrin repeat domain 10	NM_001167967|Ankrd10|102334|ankyrin repeat domain 10	NM_133971|Ankrd10|102334|ankyrin repeat domain 10	AK050983|Ankrd10|102334|ankyrin repeat domain 10
mm9_v1_chr6_+_113102884_113103027	0.752458	CDX1,2,4.p2	AK088328|Setd5|72895|SET domain containing 5
mm9_v1_chr6_+_54839147_54839273	0.752372	CDX1,2,4.p2	AK078666|Znrf2|387524|zinc and ring finger 2
mm9_v1_chr17_+_87316687_87316777	0.751704	CDX1,2,4.p2	NM_030104|1700090G07Rik|78469|RIKEN cDNA 1700090G07 gene	AK018916|1700090G07Rik|78469|RIKEN cDNA 1700090G07 gene	BC100486|1700090G07Rik|78469|RIKEN cDNA 1700090G07 gene	AK076910|1700090G07Rik|78469|RIKEN cDNA 1700090G07 gene
mm9_v1_chr14_-_53087135_53087135	0.751003	CDX1,2,4.p2	NM_020513|Olfr1508|57270|olfactory receptor 1508
mm9_v1_chr2_+_3630729_3630774	0.749713	CDX1,2,4.p2	AK032875|Fam107b|66540|family with sequence similarity 107, member B	NM_025626|Fam107b|66540|family with sequence similarity 107, member B	AK013932|Fam107b|66540|family with sequence similarity 107, member B	AK168759|Fam107b|66540|family with sequence similarity 107, member B	BC021353|Fam107b|66540|family with sequence similarity 107, member B
mm9_v1_chr13_+_38129095_38129163	0.748789	CDX1,2,4.p2	AK152707|Riok1|71340|RIO kinase 1 (yeast)	BC006884|Riok1|71340|RIO kinase 1 (yeast)	AK017312|Riok1|71340|RIO kinase 1 (yeast)	NM_024242|Riok1|71340|RIO kinase 1 (yeast)
mm9_v1_chr11_-_51419012_51419040	0.748565	CDX1,2,4.p2	AK207379|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B
mm9_v1_chr1_-_60155312_60155400	0.746205	CDX1,2,4.p2	AB041608|Wdr12|57750|WD repeat domain 12	NM_001199060|Wdr12|57750|WD repeat domain 12
mm9_v1_chr6_+_30589217_30589220	0.745837	CDX1,2,4.p2	BC052661|Cpa1|109697|carboxypeptidase A1	NM_025350|Cpa1|109697|carboxypeptidase A1
mm9_v1_chr13_-_23714425_23714427	0.742695	CDX1,2,4.p2	BC089600|Hist1h1e|50709|histone cluster 1, H1e	NM_015787|Hist1h1e|50709|histone cluster 1, H1e
mm9_v1_chr11_+_93905501_93905545	0.742623	CDX1,2,4.p2	AK014060|Spag9|70834|sperm associated antigen 9	AK079365|Spag9|70834|sperm associated antigen 9	NM_001025428|Spag9|70834|sperm associated antigen 9	NM_001025429|Spag9|70834|sperm associated antigen 9	NM_001025430|Spag9|70834|sperm associated antigen 9	AK172961|Spag9|70834|sperm associated antigen 9
mm9_v1_chr4_+_116265582_116265626	0.741006	CDX1,2,4.p2	BC002292|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1
mm9_v1_chr3_-_88262982_88263022	0.738023	CDX1,2,4.p2	NM_001163490|Sema4a|20351|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm9_v1_chr14_+_34030008_34030008	0.736996	CDX1,2,4.p2	AK046097|Arhgap22|239027|Rho GTPase activating protein 22	NM_153800|Arhgap22|239027|Rho GTPase activating protein 22
mm9_v1_chr11_-_115794319_115794319	0.736604	CDX1,2,4.p2	AB059999|Recql5|170472|RecQ protein-like 5	NM_130454|Recql5|170472|RecQ protein-like 5
mm9_v1_chr9_-_44550590_44550598	0.734356	CDX1,2,4.p2	
mm9_v1_chr6_-_145167481_145167570	0.731903	CDX1,2,4.p2	BC014700|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	BC031623|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
mm9_v1_chr5_-_137510950_137511054	0.731471	CDX1,2,4.p2	AK192071|Ap1s1|11769|adaptor protein complex AP-1, sigma 1
mm9_v1_chr10_+_128227964_128228056	0.730876	CDX1,2,4.p2	AK079924|Mmp19|58223|matrix metallopeptidase 19	NM_001164197|Mmp19|58223|matrix metallopeptidase 19	AK080125|Mmp19|58223|matrix metallopeptidase 19	AK136517|Mmp19|58223|matrix metallopeptidase 19	NM_021412|Mmp19|58223|matrix metallopeptidase 19	AK154863|Mmp19|58223|matrix metallopeptidase 19	AF155221|Mmp19|58223|matrix metallopeptidase 19	AF162446|Mmp19|58223|matrix metallopeptidase 19	BC112966|Mmp19|58223|matrix metallopeptidase 19	AF153199|Mmp19|58223|matrix metallopeptidase 19
mm9_v1_chr8_-_64601861_64601991	0.729735	CDX1,2,4.p2	BC125319|Anxa10|26359|annexin A10	BC132207|Anxa10|26359|annexin A10	AJ238978|Anxa10|26359|annexin A10	AK168715|Anxa10|26359|annexin A10	NM_001136089|Anxa10|26359|annexin A10	AK131880|Anxa10|26359|annexin A10	AK008772|Anxa10|26359|annexin A10	AK008808|Anxa10|26359|annexin A10	AK020288|Anxa10|26359|annexin A10	NM_011922|Anxa10|26359|annexin A10	AK018597|Anxa10|26359|annexin A10	AK008930|Anxa10|26359|annexin A10
mm9_v1_chr17_+_34052312_34052432	0.729061	CDX1,2,4.p2	
mm9_v1_chr13_-_65307023_65307023	0.728894	CDX1,2,4.p2	NM_175290|Nlrp4f|97895|NLR family, pyrin domain containing 4F
mm9_v1_chr11_-_103265172_103265227	0.727342	CDX1,2,4.p2	AK154703|Plekhm1|353047|pleckstrin homology domain containing, family M (with RUN domain) member 1
mm9_v1_chr6_-_87793898_87794088	0.726818	CDX1,2,4.p2	AK207643|Cnbp|12785|cellular nucleic acid binding protein	AK188144|Cnbp|12785|cellular nucleic acid binding protein
mm9_v1_chr15_-_98748371_98748661	0.726535	CDX1,2,4.p2	AY052398|Lmbr1l|74775|limb region 1 like	AK003656|Lmbr1l|74775|limb region 1 like	BC023397|Lmbr1l|74775|limb region 1 like	AK170328|Lmbr1l|74775|limb region 1 like	AK143891|Lmbr1l|74775|limb region 1 like	AK030589|Lmbr1l|74775|limb region 1 like	AK049110|Lmbr1l|74775|limb region 1 like	NM_029098|Lmbr1l|74775|limb region 1 like	AK154968|Lmbr1l|74775|limb region 1 like
mm9_v1_chr4_+_101091875_101091893	0.725987	CDX1,2,4.p2	AK134600|Ak4|11639|adenylate kinase 4	NM_001177602|Ak4|11639|adenylate kinase 4
mm9_v1_chr19_+_6184321_6184495	0.725283	CDX1,2,4.p2	AK028710|1700123I01Rik|622554|RIKEN cDNA 1700123I01 gene	AK007250|1700123I01Rik|622554|RIKEN cDNA 1700123I01 gene	NM_001165919|1700123I01Rik|622554|RIKEN cDNA 1700123I01 gene	BC138005|1700123I01Rik|622554|RIKEN cDNA 1700123I01 gene	BC145092|1700123I01Rik|622554|RIKEN cDNA 1700123I01 gene
mm9_v1_chr2_-_34610751_34610751	0.724673	CDX1,2,4.p2	BC060123|Gapvd1|66691|GTPase activating protein and VPS9 domains 1	NM_025709|Gapvd1|66691|GTPase activating protein and VPS9 domains 1
mm9_v1_chr15_-_101363197_101363254	0.722851	CDX1,2,4.p2	AY028607|Krt84|16680|keratin 84	BC114971|Krt84|16680|keratin 84	NM_008474|Krt84|16680|keratin 84
mm9_v1_chr7_+_22397763_22397763	0.722143	CDX1,2,4.p2	NM_001122682|Vmn1r132|100043604|vomeronasal 1 receptor 132
mm9_v1_chr1_+_167693876_167693939	0.721935	CDX1,2,4.p2	AK005388|Creg1|433375|cellular repressor of E1A-stimulated genes 1	AK010947|Creg1|433375|cellular repressor of E1A-stimulated genes 1	AK144101|Creg1|433375|cellular repressor of E1A-stimulated genes 1	AF084524|Creg1|433375|cellular repressor of E1A-stimulated genes 1	BC027426|Creg1|433375|cellular repressor of E1A-stimulated genes 1	NM_011804|Creg1|433375|cellular repressor of E1A-stimulated genes 1	AK150006|Creg1|433375|cellular repressor of E1A-stimulated genes 1
mm9_v1_chr7_+_86040793_86040943	0.720643	CDX1,2,4.p2	AK031972|Aen|68048|apoptosis enhancing nuclease	NM_001162939|Aen|68048|apoptosis enhancing nuclease	NM_026531|Aen|68048|apoptosis enhancing nuclease	AK165708|Aen|68048|apoptosis enhancing nuclease	AK012555|Aen|68048|apoptosis enhancing nuclease	AK090056|Aen|68048|apoptosis enhancing nuclease	AK166806|Aen|68048|apoptosis enhancing nuclease	AK167042|Aen|68048|apoptosis enhancing nuclease	AK076421|Aen|68048|apoptosis enhancing nuclease	AK167658|Aen|68048|apoptosis enhancing nuclease	AK017644|Aen|68048|apoptosis enhancing nuclease	AK089090|Aen|68048|apoptosis enhancing nuclease	BC022614|Aen|68048|apoptosis enhancing nuclease
mm9_v1_chr9_-_88614635_88614635	0.720189	CDX1,2,4.p2	NM_001128601|Gm2382|100039707|predicted gene 2382
mm9_v1_chr4_+_19207954_19207996	0.718911	CDX1,2,4.p2	BC100395|Cngb3|30952|cyclic nucleotide gated channel beta 3	AJ243572|Cngb3|30952|cyclic nucleotide gated channel beta 3	NM_013927|Cngb3|30952|cyclic nucleotide gated channel beta 3
mm9_v1_chr8_-_74533511_74533524	0.716999	CDX1,2,4.p2	BC013494|Cyp4f18|72054|cytochrome P450, family 4, subfamily f, polypeptide 18	AF233647|Cyp4f18|72054|cytochrome P450, family 4, subfamily f, polypeptide 18	AK007863|Cyp4f18|72054|cytochrome P450, family 4, subfamily f, polypeptide 18	NM_024444|Cyp4f18|72054|cytochrome P450, family 4, subfamily f, polypeptide 18
mm9_v1_chr2_-_51790671_51790711	0.71621	CDX1,2,4.p2	AK002739|Rbm43|71684|RNA binding motif protein 43
mm9_v1_chr2_+_13504271_13504305	0.715998	CDX1,2,4.p2	
mm9_v1_chr8_-_74195650_74195661	0.715433	CDX1,2,4.p2	NM_001029873|Unc13a|382018|unc-13 homolog A (C. elegans)	AK035920|Unc13a|382018|unc-13 homolog A (C. elegans)
mm9_v1_chr17_-_55851857_55851925	0.715401	CDX1,2,4.p2	AK045286|Pot1b|72836|protection of telomeres 1B	AK165040|Pot1b|72836|protection of telomeres 1B	AK050727|Pot1b|72836|protection of telomeres 1B	AK013364|Pot1b|72836|protection of telomeres 1B	NM_028370|Pot1b|72836|protection of telomeres 1B
mm9_v1_chr5_+_11594955_11594955	0.714992	CDX1,2,4.p2	BC110565|Gm6460|623898|predicted gene 6460	NM_001037919|Gm6460|623898|predicted gene 6460
mm9_v1_chr13_-_67738689_67738740	0.714719	CDX1,2,4.p2	AK138962|A530054K11Rik|212281|RIKEN cDNA A530054K11 gene	NM_183146|A530054K11Rik|212281|RIKEN cDNA A530054K11 gene	BC098180|A530054K11Rik|212281|RIKEN cDNA A530054K11 gene	AK040978|A530054K11Rik|212281|RIKEN cDNA A530054K11 gene
mm9_v1_chr17_-_27327042_27327306	0.711481	CDX1,2,4.p2	AK217086|Lemd2|224640|LEM domain containing 2	AK212367|Lemd2|224640|LEM domain containing 2
mm9_v1_chr6_+_57159851_57159851	0.711178	CDX1,2,4.p2	NM_053235|Vmn1r13|113862|vomeronasal 1 receptor 13
mm9_v1_chr4_-_11181373_11181380	0.710929	CDX1,2,4.p2	AK169552|Ints8|72656|integrator complex subunit 8	AK049513|Ints8|72656|integrator complex subunit 8
mm9_v1_chr11_-_97643718_97643767	0.709147	CDX1,2,4.p2	NM_022891|Rpl23|65019|ribosomal protein L23
mm9_v1_chr9_+_57770320_57770335	0.708829	CDX1,2,4.p2	AK207788|Ubl7|69459|ubiquitin-like 7 (bone marrow stromal cell-derived)
mm9_v1_chr6_-_39370351_39370385	0.707792	CDX1,2,4.p2	BC003329|Mkrn1|54484|makorin, ring finger protein, 1	AK077060|Mkrn1|54484|makorin, ring finger protein, 1	NM_018810|Mkrn1|54484|makorin, ring finger protein, 1	AF192785|Mkrn1|54484|makorin, ring finger protein, 1
mm9_v1_chr18_-_35130489_35130501	0.707474	CDX1,2,4.p2	
mm9_v1_chr3_-_27052733_27052775	0.707149	CDX1,2,4.p2	AK040174|Ect2|13605|ect2 oncogene	BC045614|Ect2|13605|ect2 oncogene	BC025565|Ect2|13605|ect2 oncogene	BC032155|Ect2|13605|ect2 oncogene	BC023881|Ect2|13605|ect2 oncogene	AK157718|Ect2|13605|ect2 oncogene	L11316|Ect2|13605|ect2 oncogene	AK220452|Ect2|13605|ect2 oncogene	NM_001177625|Ect2|13605|ect2 oncogene	NM_007900|Ect2|13605|ect2 oncogene
mm9_v1_chr5_+_130663030_130663049	0.705541	CDX1,2,4.p2	AK044568|Rabgef1|56715|RAB guanine nucleotide exchange factor (GEF) 1	BC018229|Rabgef1|56715|RAB guanine nucleotide exchange factor (GEF) 1	NM_019983|Rabgef1|56715|RAB guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr17_+_56752805_56752873	0.705177	CDX1,2,4.p2	NM_018730|Rpl36|54217|ribosomal protein L36	AK003115|Rpl36|54217|ribosomal protein L36	BC086914|Rpl36|54217|ribosomal protein L36	BC021595|Rpl36|54217|ribosomal protein L36	X75895|Rpl36|54217|ribosomal protein L36
mm9_v1_chr11_-_69485842_69485924	0.701202	CDX1,2,4.p2	NM_001159375|Eif4a1|13681|eukaryotic translation initiation factor 4A1	NM_144958|Eif4a1|13681|eukaryotic translation initiation factor 4A1
mm9_v1_chr5_-_143987485_143987560	0.699073	CDX1,2,4.p2	AY820308|Spdyb|74673|speedy homolog B (Xenopus laevis)	AK015441|Spdyb|74673|speedy homolog B (Xenopus laevis)	NM_029048|Spdyb|74673|speedy homolog B (Xenopus laevis)
mm9_v1_chr3_+_95392919_95392945	0.697634	CDX1,2,4.p2	BC027194|Golph3l|229593|golgi phosphoprotein 3-like
mm9_v1_chr11_+_31900378_31900504	0.696395	CDX1,2,4.p2	AK088499|Nsg2|18197|neuron specific gene family member 2	NM_008741|Nsg2|18197|neuron specific gene family member 2	U17259|Nsg2|18197|neuron specific gene family member 2	AK049679|Nsg2|18197|neuron specific gene family member 2	AK075612|Nsg2|18197|neuron specific gene family member 2	AK160712|Nsg2|18197|neuron specific gene family member 2	BC018224|Nsg2|18197|neuron specific gene family member 2	AK041338|Nsg2|18197|neuron specific gene family member 2
mm9_v1_chr11_-_103815334_103815354	0.696356	CDX1,2,4.p2	AK042341|Nsf|18195|N-ethylmaleimide sensitive fusion protein	AK049281|Nsf|18195|N-ethylmaleimide sensitive fusion protein	AK051430|Nsf|18195|N-ethylmaleimide sensitive fusion protein	AK141986|Nsf|18195|N-ethylmaleimide sensitive fusion protein	AK153905|Nsf|18195|N-ethylmaleimide sensitive fusion protein
mm9_v1_chr6_-_99385338_99385338	0.694129	CDX1,2,4.p2	NM_053202|Foxp1|108655|forkhead box P1
mm9_v1_chr13_+_97158248_97158334	0.69397	CDX1,2,4.p2	AK150656|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	NM_026173|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	AK012926|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	BC037631|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	BC027118|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	AK089013|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	AK004769|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	BC016527|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)
mm9_v1_chr1_+_89999782_89999852	0.691223	CDX1,2,4.p2	NM_201410|Ugt1a6b|394435|UDP glucuronosyltransferase 1 family, polypeptide A6B	BC026561|Ugt1a6b|394435|UDP glucuronosyltransferase 1 family, polypeptide A6B
mm9_v1_chr1_-_134036041_134036303	0.690954	CDX1,2,4.p2	AK171569|Cdk18|18557|cyclin-dependent kinase 18	BC119617|Cdk18|18557|cyclin-dependent kinase 18	BC119618|Cdk18|18557|cyclin-dependent kinase 18	AK004998|Cdk18|18557|cyclin-dependent kinase 18	X69026|Cdk18|18557|cyclin-dependent kinase 18	NM_008795|Cdk18|18557|cyclin-dependent kinase 18
mm9_v1_chr17_-_65944300_65944335	0.690741	CDX1,2,4.p2	AK149040|Vapa|30960|vesicle-associated membrane protein, associated protein A
mm9_v1_chr11_+_46254601_46254700	0.690015	CDX1,2,4.p2	AK210054|Med7|66213|mediator complex subunit 7
mm9_v1_chr6_+_140571183_140571183	0.687288	CDX1,2,4.p2	AK029011|Aebp2|11569|AE binding protein 2	NM_178803|Aebp2|11569|AE binding protein 2
mm9_v1_chr9_+_70526702_70526924	0.686363	CDX1,2,4.p2	BC066207|Adam10|11487|a disintegrin and metallopeptidase domain 10	NM_007399|Adam10|11487|a disintegrin and metallopeptidase domain 10	BC057346|Adam10|11487|a disintegrin and metallopeptidase domain 10
mm9_v1_chr6_-_5248235_5248333	0.685638	CDX1,2,4.p2	BC037140|Pon2|330260|paraoxonase 2	L48514|Pon2|330260|paraoxonase 2	AK152351|Pon2|330260|paraoxonase 2	AK171926|Pon2|330260|paraoxonase 2	BC021887|Pon2|330260|paraoxonase 2
mm9_v1_chr17_+_34341467_34341526	0.685495	CDX1,2,4.p2	AK145234|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151657|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK161091|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	BC051257|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK020022|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK079667|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151376|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151483|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK153287|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	BC005578|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
mm9_v1_chr9_+_113721698_113721717	0.685459	CDX1,2,4.p2	AK043551|Clasp2|76499|CLIP associating protein 2	AK148966|Clasp2|76499|CLIP associating protein 2	AK164326|Clasp2|76499|CLIP associating protein 2	NM_001081960|Clasp2|76499|CLIP associating protein 2	NM_029633|Clasp2|76499|CLIP associating protein 2	BC117963|Clasp2|76499|CLIP associating protein 2	BC117964|Clasp2|76499|CLIP associating protein 2	BC131791|Clasp2|76499|CLIP associating protein 2	BC131792|Clasp2|76499|CLIP associating protein 2	BC141415|Clasp2|76499|CLIP associating protein 2
mm9_v1_chr2_+_14096150_14096167	0.683109	CDX1,2,4.p2	AK144489|Fam23a|625286|family with sequence similarity 23, member A	NM_001081310|Fam23a|625286|family with sequence similarity 23, member A
mm9_v1_chr9_-_38455101_38455106	0.682924	CDX1,2,4.p2	BC111098|Olfr915|258781|olfactory receptor 915	NM_146785|Olfr915|258781|olfactory receptor 915
mm9_v1_chr19_+_56622750_56622913	0.682221	CDX1,2,4.p2	AK033384|Nhlrc2|66866|NHL repeat containing 2	NM_025811|Nhlrc2|66866|NHL repeat containing 2	BC095956|Nhlrc2|66866|NHL repeat containing 2	BC138190|Nhlrc2|66866|NHL repeat containing 2	BC138191|Nhlrc2|66866|NHL repeat containing 2
mm9_v1_chr16_-_89404012_89404112	0.682129	CDX1,2,4.p2	AF345297|Krtap16-7|170656|keratin associated protein 16-7	BC145974|Krtap16-7|170656|keratin associated protein 16-7	BC145976|Krtap16-7|170656|keratin associated protein 16-7	NM_028621|Krtap16-7|170656|keratin associated protein 16-7	AK003736|Krtap16-7|170656|keratin associated protein 16-7	BC147776|Krtap16-7|170656|keratin associated protein 16-7	BC147786|Krtap16-7|170656|keratin associated protein 16-7
mm9_v1_chr4_-_11181335_11181349	0.681933	CDX1,2,4.p2	BC049092|Ints8|72656|integrator complex subunit 8	BC057618|Ints8|72656|integrator complex subunit 8
mm9_v1_chr8_+_73895369_73895482	0.679117	CDX1,2,4.p2	AK020528|Ocel1|77090|occludin/ELL domain containing 1
mm9_v1_chr10_-_82996846_82996884	0.678125	CDX1,2,4.p2	AK141954|Aldh1l2|216188|aldehyde dehydrogenase 1 family, member L2	NM_153543|Aldh1l2|216188|aldehyde dehydrogenase 1 family, member L2
mm9_v1_chr4_+_154927575_154927585	0.678083	CDX1,2,4.p2	AK209108|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK213242|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK217766|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK219535|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr3_+_14480698_14480724	0.674881	CDX1,2,4.p2	AB055005|Slc7a12|140918|solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	AK085644|Slc7a12|140918|solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	NM_080852|Slc7a12|140918|solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	AJ417663|Slc7a12|140918|solute carrier family 7 (cationic amino acid transporter, y+ system), member 12
mm9_v1_chr14_-_109313447_109313461	0.674213	CDX1,2,4.p2	NM_199065|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr5_+_88805132_88805132	0.674015	CDX1,2,4.p2	AK017352|Amtn|71421|amelotin	NM_027793|Amtn|71421|amelotin
mm9_v1_chr16_-_22657245_22657273	0.671306	CDX1,2,4.p2	AK220294|Dgkg|110197|diacylglycerol kinase, gamma	AK087972|Dgkg|110197|diacylglycerol kinase, gamma	AK085470|Dgkg|110197|diacylglycerol kinase, gamma
mm9_v1_chrX_-_76880891_76880920	0.670257	CDX1,2,4.p2	AK167347|Mageb16|71967|melanoma antigen family B, 16	BC050207|Mageb16|71967|melanoma antigen family B, 16	NM_001113734|Mageb16|71967|melanoma antigen family B, 16
mm9_v1_chr12_+_33987379_33987464	0.669684	CDX1,2,4.p2	NM_001033436|Atxn7l1|380753|ataxin 7-like 1	AK156016|Atxn7l1|380753|ataxin 7-like 1	BC147479|Atxn7l1|380753|ataxin 7-like 1	BC147483|Atxn7l1|380753|ataxin 7-like 1
mm9_v1_chr6_+_64992861_64992872	0.66764	CDX1,2,4.p2	AK147884|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm9_v1_chr1_-_134638361_134638397	0.667369	CDX1,2,4.p2	AK052440|Nfasc|269116|neurofascin	NM_001160317|Nfasc|269116|neurofascin	NM_182716|Nfasc|269116|neurofascin
mm9_v1_chr1_+_138364511_138364534	0.665711	CDX1,2,4.p2	BC158132|Kif14|381293|kinesin family member 14	NM_001081258|Kif14|381293|kinesin family member 14
mm9_v1_chr10_+_40199817_40199881	0.664695	CDX1,2,4.p2	AK030146|Cdk19|78334|cyclin-dependent kinase 19
mm9_v1_chr1_-_23929098_23929255	0.661019	CDX1,2,4.p2	BC006946|Smap1|98366|stromal membrane-associated protein 1	NM_028534|Smap1|98366|stromal membrane-associated protein 1	BC100537|Smap1|98366|stromal membrane-associated protein 1
mm9_v1_chr13_-_55516542_55516592	0.661004	CDX1,2,4.p2	EU375560|Pfn3|75477|profilin 3	AK005930|Pfn3|75477|profilin 3	BC048629|Pfn3|75477|profilin 3	NM_029303|Pfn3|75477|profilin 3
mm9_v1_chr3_+_59533707_59533707	0.660027	CDX1,2,4.p2	NM_001101531|Gm5538|433597|predicted gene 5538
mm9_v1_chr1_+_37356722_37356738	0.659865	CDX1,2,4.p2	AK162581|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	NM_030266|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I
mm9_v1_chr19_-_11679226_11679234	0.659384	CDX1,2,4.p2	AB026047|Ms4a6d|68774|membrane-spanning 4-domains, subfamily A, member 6D	BC018331|Ms4a6d|68774|membrane-spanning 4-domains, subfamily A, member 6D
mm9_v1_chr17_+_22498419_22498488	0.657607	CDX1,2,4.p2	NM_145484|Zfp758|224598|zinc finger protein 758	BC037455|Zfp758|224598|zinc finger protein 758	AK028301|Zfp758|224598|zinc finger protein 758	BC022203|Zfp758|224598|zinc finger protein 758	BC056632|Zfp758|224598|zinc finger protein 758	BC021442|Zfp758|224598|zinc finger protein 758
mm9_v1_chr7_-_149482973_149482973	0.65732	CDX1,2,4.p2	BC104355|Krtap5-1|50774|keratin associated protein 5-1	NM_015808|Krtap5-1|50774|keratin associated protein 5-1
mm9_v1_chr17_-_23736453_23736453	0.6564	CDX1,2,4.p2	AK030240|Zfp13|22654|zinc finger protein 13	NM_011747|Zfp13|22654|zinc finger protein 13
mm9_v1_chr1_-_39608846_39608882	0.655741	CDX1,2,4.p2	AK040602|Rnf149|67702|ring finger protein 149
mm9_v1_chr4_-_139388882_139388882	0.65443	CDX1,2,4.p2	AF254422|Pax7|18509|paired box gene 7	NM_011039|Pax7|18509|paired box gene 7
mm9_v1_chr4_-_11181388_11181409	0.654331	CDX1,2,4.p2	AK140829|Ints8|72656|integrator complex subunit 8	NM_001159595|Ints8|72656|integrator complex subunit 8	NM_178112|Ints8|72656|integrator complex subunit 8
mm9_v1_chr1_+_93041665_93041717	0.654331	CDX1,2,4.p2	AK133355|Rbm44|329207|RNA binding motif protein 44	NM_001033408|Rbm44|329207|RNA binding motif protein 44	BC150950|Rbm44|329207|RNA binding motif protein 44
mm9_v1_chr17_-_35211408_35211444	0.65403	CDX1,2,4.p2	AJ315548|Ly6g6d|114654|lymphocyte antigen 6 complex, locus G6D	AJ315549|Ly6g6d|114654|lymphocyte antigen 6 complex, locus G6D	NM_033478|Ly6g6d|114654|lymphocyte antigen 6 complex, locus G6D	BC131988|Ly6g6d|114654|lymphocyte antigen 6 complex, locus G6D	BC131990|Ly6g6d|114654|lymphocyte antigen 6 complex, locus G6D
mm9_v1_chr12_+_107248419_107248492	0.653314	CDX1,2,4.p2	BC016676|Vrk1|22367|vaccinia related kinase 1	NM_001029843|Vrk1|22367|vaccinia related kinase 1	NM_001029844|Vrk1|22367|vaccinia related kinase 1	NM_011705|Vrk1|22367|vaccinia related kinase 1	BC051072|Vrk1|22367|vaccinia related kinase 1
mm9_v1_chr2_+_112219335_112219462	0.653025	CDX1,2,4.p2	AK036861|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	NM_024254|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK168639|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK049599|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK151464|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK010654|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK152570|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC003216|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC012402|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC080661|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK162183|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene
mm9_v1_chr1_+_89967340_89967428	0.652736	CDX1,2,4.p2	NM_201644|Ugt1a9|394434|UDP glucuronosyltransferase 1 family, polypeptide A9	AY227200|Ugt1a9|394434|UDP glucuronosyltransferase 1 family, polypeptide A9	BC138699|Ugt1a9|394434|UDP glucuronosyltransferase 1 family, polypeptide A9	BC146021|Ugt1a9|394434|UDP glucuronosyltransferase 1 family, polypeptide A9	BC019434|Ugt1a9|394434|UDP glucuronosyltransferase 1 family, polypeptide A9	L27122|Ugt1a9|394434|UDP glucuronosyltransferase 1 family, polypeptide A9	S57479|Ugt1a9|394434|UDP glucuronosyltransferase 1 family, polypeptide A9
mm9_v1_chr11_-_70468061_70468117	0.651832	CDX1,2,4.p2	AK028117|Pfn1|18643|profilin 1	AK150780|Pfn1|18643|profilin 1	BC002080|Pfn1|18643|profilin 1
mm9_v1_chr4_-_129419450_129419570	0.651385	CDX1,2,4.p2	BC002051|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	U17046|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK146815|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	U17961|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK150687|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK152084|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	NM_011317|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK044927|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK050520|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK137122|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1
mm9_v1_chr1_-_90406613_90406640	0.650661	CDX1,2,4.p2	BC139128|Glrp1|14659|glutamine repeat protein 1	BC139129|Glrp1|14659|glutamine repeat protein 1	NM_008132|Glrp1|14659|glutamine repeat protein 1	U46463|Glrp1|14659|glutamine repeat protein 1
mm9_v1_chr4_-_118993081_118993127	0.64904	CDX1,2,4.p2	BC050116|Ppih|66101|peptidyl prolyl isomerase H	BC016565|Ppih|66101|peptidyl prolyl isomerase H	BC098490|Ppih|66101|peptidyl prolyl isomerase H	AK136330|Ppih|66101|peptidyl prolyl isomerase H	AK005202|Ppih|66101|peptidyl prolyl isomerase H	AK014665|Ppih|66101|peptidyl prolyl isomerase H	AK164299|Ppih|66101|peptidyl prolyl isomerase H	AK003179|Ppih|66101|peptidyl prolyl isomerase H	AK008394|Ppih|66101|peptidyl prolyl isomerase H	AK134995|Ppih|66101|peptidyl prolyl isomerase H	NM_001110129|Ppih|66101|peptidyl prolyl isomerase H	NM_001110130|Ppih|66101|peptidyl prolyl isomerase H	NM_028677|Ppih|66101|peptidyl prolyl isomerase H
mm9_v1_chr5_+_107926763_107926815	0.64888	CDX1,2,4.p2	AK043587|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	NM_001007574|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK043720|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK164388|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK169666|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	NM_001168557|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene
mm9_v1_chr10_-_53349799_53349820	0.647795	CDX1,2,4.p2	AK018494|Mcm9|71567|minichromosome maintenance complex component 9
mm9_v1_chr17_-_24615972_24616025	0.646466	CDX1,2,4.p2	AF237676|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK002751|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK083731|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	BC015279|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK048102|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK038515|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK077680|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK088951|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK040100|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	NM_019988|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)
mm9_v1_chr14_-_64147067_64147107	0.645734	CDX1,2,4.p2	AF073881|Mtmr9|210376|myotubularin related protein 9
mm9_v1_chr11_+_4795308_4795373	0.645694	CDX1,2,4.p2	AK040311|Thoc5|107829|THO complex 5	AK050734|Thoc5|107829|THO complex 5	NM_172438|Thoc5|107829|THO complex 5	BC039758|Thoc5|107829|THO complex 5	AK087099|Thoc5|107829|THO complex 5
mm9_v1_chr1_-_146024404_146024501	0.645498	CDX1,2,4.p2	AF498319|Rgs13|246709|regulator of G-protein signaling 13	BC049624|Rgs13|246709|regulator of G-protein signaling 13	AK043268|Rgs13|246709|regulator of G-protein signaling 13	NM_153171|Rgs13|246709|regulator of G-protein signaling 13
mm9_v1_chr17_+_88524851_88524851	0.64365	CDX1,2,4.p2	AK139504|Gm4832|225058|predicted gene 4832	NM_001190356|Gm4832|225058|predicted gene 4832
mm9_v1_chr2_+_32612744_32612905	0.642423	CDX1,2,4.p2	BC003466|Tor2a|30933|torsin family 2, member A	BC024469|Tor2a|30933|torsin family 2, member A	NM_152800|Tor2a|30933|torsin family 2, member A	AK170979|Tor2a|30933|torsin family 2, member A	AK171247|Tor2a|30933|torsin family 2, member A	AK162719|Tor2a|30933|torsin family 2, member A	AK019246|Tor2a|30933|torsin family 2, member A	AK185253|Tor2a|30933|torsin family 2, member A	AK189495|Tor2a|30933|torsin family 2, member A
mm9_v1_chr18_-_67708826_67708826	0.642002	CDX1,2,4.p2	BC058320|Spire1|68166|spire homolog 1 (Drosophila)	NM_176832|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chr4_-_43022972_43023183	0.640606	CDX1,2,4.p2	AY049715|Fancg|60534|Fanconi anemia, complementation group G	BC139763|Fancg|60534|Fanconi anemia, complementation group G	AF112439|Fancg|60534|Fanconi anemia, complementation group G	BC141282|Fancg|60534|Fanconi anemia, complementation group G	AF406951|Fancg|60534|Fanconi anemia, complementation group G	NM_001163233|Fancg|60534|Fanconi anemia, complementation group G	NM_053081|Fancg|60534|Fanconi anemia, complementation group G
mm9_v1_chr4_+_44045506_44045645	0.638292	CDX1,2,4.p2	
mm9_v1_chr8_+_13026014_13026055	0.636794	CDX1,2,4.p2	AK154742|F7|14068|coagulation factor VII	NM_010172|F7|14068|coagulation factor VII	AK171362|F7|14068|coagulation factor VII	AK089402|F7|14068|coagulation factor VII	U44795|F7|14068|coagulation factor VII	AK155323|F7|14068|coagulation factor VII	BC061149|F7|14068|coagulation factor VII
mm9_v1_chr12_+_112783003_112783121	0.634546	CDX1,2,4.p2	AK218038|Eif5|217869|eukaryotic translation initiation factor 5
mm9_v1_chr19_+_55255374_55255445	0.633377	CDX1,2,4.p2	NM_009348|Tectb|21684|tectorin beta	X99806|Tectb|21684|tectorin beta	BC138888|Tectb|21684|tectorin beta	BC138889|Tectb|21684|tectorin beta
mm9_v1_chr8_+_22165223_22165266	0.630664	CDX1,2,4.p2	AK008266|Defa21|66298|defensin, alpha, 21	NM_183253|Defa21|66298|defensin, alpha, 21	AY746426|Defa21|66298|defensin, alpha, 21
mm9_v1_chr4_+_148478238_148478288	0.628028	CDX1,2,4.p2	AK039227|Dffa|13347|DNA fragmentation factor, alpha subunit	NM_001025296|Dffa|13347|DNA fragmentation factor, alpha subunit	NM_010044|Dffa|13347|DNA fragmentation factor, alpha subunit	AK154488|Dffa|13347|DNA fragmentation factor, alpha subunit
mm9_v1_chr2_+_124436328_124436346	0.627127	CDX1,2,4.p2	AK084922|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	AK031307|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr6_+_146754051_146754051	0.626418	CDX1,2,4.p2	AY005163|Arntl2|272322|aryl hydrocarbon receptor nuclear translocator-like 2	AY014836|Arntl2|272322|aryl hydrocarbon receptor nuclear translocator-like 2	BC108965|Arntl2|272322|aryl hydrocarbon receptor nuclear translocator-like 2	BC108966|Arntl2|272322|aryl hydrocarbon receptor nuclear translocator-like 2	DQ322241|Arntl2|272322|aryl hydrocarbon receptor nuclear translocator-like 2	DQ355143|Arntl2|272322|aryl hydrocarbon receptor nuclear translocator-like 2	NM_172309|Arntl2|272322|aryl hydrocarbon receptor nuclear translocator-like 2
mm9_v1_chr4_+_130219255_130219279	0.625855	CDX1,2,4.p2	AK162742|Pum1|80912|pumilio 1 (Drosophila)	NM_001159603|Pum1|80912|pumilio 1 (Drosophila)	NM_001159604|Pum1|80912|pumilio 1 (Drosophila)	NM_001159605|Pum1|80912|pumilio 1 (Drosophila)	NM_001159606|Pum1|80912|pumilio 1 (Drosophila)	NM_030722|Pum1|80912|pumilio 1 (Drosophila)	AK141921|Pum1|80912|pumilio 1 (Drosophila)
mm9_v1_chr3_-_51129908_51129958	0.624438	CDX1,2,4.p2	AF256216|Elf2|69257|E74-like factor 2	AF256217|Elf2|69257|E74-like factor 2	NM_023502|Elf2|69257|E74-like factor 2	BC092057|Elf2|69257|E74-like factor 2
mm9_v1_chr9_-_62659736_62659749	0.623841	CDX1,2,4.p2	AK154060|Fem1b|14155|feminization 1 homolog b (C. elegans)
mm9_v1_chr9_-_103256690_103256767	0.62345	CDX1,2,4.p2	BC030486|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC064103|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3
mm9_v1_chr4_+_12067460_12067484	0.62345	CDX1,2,4.p2	BC050844|Rbm12b|72397|RNA binding motif protein 12B
mm9_v1_chr9_-_107888185_107888220	0.622843	CDX1,2,4.p2	BC115538|6230427J02Rik|68176|RIKEN cDNA 6230427J02 gene	AK020090|6230427J02Rik|68176|RIKEN cDNA 6230427J02 gene	AK076092|6230427J02Rik|68176|RIKEN cDNA 6230427J02 gene
mm9_v1_chr11_-_97643692_97643709	0.621458	CDX1,2,4.p2	AK012694|Rpl23|65019|ribosomal protein L23	AK018730|Rpl23|65019|ribosomal protein L23	AK150671|Rpl23|65019|ribosomal protein L23	AK002579|Rpl23|65019|ribosomal protein L23	AK010680|Rpl23|65019|ribosomal protein L23
mm9_v1_chr1_+_173433608_173433701	0.621084	CDX1,2,4.p2	AK048243|Refbp2|56009|RNA and export factor binding protein 2	NM_019484|Refbp2|56009|RNA and export factor binding protein 2	BC099405|Refbp2|56009|RNA and export factor binding protein 2
mm9_v1_chr18_+_69753035_69753127	0.620679	CDX1,2,4.p2	AK014343|Tcf4|21413|transcription factor 4	U16321|Tcf4|21413|transcription factor 4	AK132140|Tcf4|21413|transcription factor 4	BC014293|Tcf4|21413|transcription factor 4
mm9_v1_chrX_-_140367467_140367853	0.619822	CDX1,2,4.p2	AY560329|Dcx|13193|doublecortin	AK048410|Dcx|13193|doublecortin	AF045547|Dcx|13193|doublecortin	AK164119|Dcx|13193|doublecortin	BC056391|Dcx|13193|doublecortin	AK049050|Dcx|13193|doublecortin	NM_001110222|Dcx|13193|doublecortin	BC057010|Dcx|13193|doublecortin	BC062974|Dcx|13193|doublecortin	AK014264|Dcx|13193|doublecortin	NM_001110223|Dcx|13193|doublecortin	NM_001110224|Dcx|13193|doublecortin	NM_010025|Dcx|13193|doublecortin	AB011678|Dcx|13193|doublecortin
mm9_v1_chr11_+_83251195_83251208	0.619461	CDX1,2,4.p2	AK006174|1700020L24Rik|66330|RIKEN cDNA 1700020L24 gene	NM_025492|1700020L24Rik|66330|RIKEN cDNA 1700020L24 gene	AK005809|1700020L24Rik|66330|RIKEN cDNA 1700020L24 gene	BC152320|1700020L24Rik|66330|RIKEN cDNA 1700020L24 gene
mm9_v1_chr2_+_79547936_79548278	0.617783	CDX1,2,4.p2	AK051670|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	NM_172420|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	BC120706|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	BC132149|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AK051449|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AK157871|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AK083940|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C
mm9_v1_chr18_+_69753146_69753168	0.615996	CDX1,2,4.p2	AK151433|Tcf4|21413|transcription factor 4
mm9_v1_chr11_+_69980155_69980168	0.615882	CDX1,2,4.p2	AK140762|Clec10a|17312|C-type lectin domain family 10, member A	AK170779|Clec10a|17312|C-type lectin domain family 10, member A
mm9_v1_chr4_+_101180580_101180604	0.615544	CDX1,2,4.p2	NM_001164584|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	NM_001164585|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	AK030374|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	AK122293|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6
mm9_v1_chr2_-_62249934_62250287	0.615007	CDX1,2,4.p2	X58384|Dpp4|13482|dipeptidylpeptidase 4	AK040409|Dpp4|13482|dipeptidylpeptidase 4	BC022183|Dpp4|13482|dipeptidylpeptidase 4	AK163085|Dpp4|13482|dipeptidylpeptidase 4	NM_001159543|Dpp4|13482|dipeptidylpeptidase 4	NM_010074|Dpp4|13482|dipeptidylpeptidase 4
mm9_v1_chr10_+_62920258_62920258	0.614626	CDX1,2,4.p2	AF344871|Ctnna3|216033|catenin (cadherin associated protein), alpha 3	AK142745|Ctnna3|216033|catenin (cadherin associated protein), alpha 3	NM_001164376|Ctnna3|216033|catenin (cadherin associated protein), alpha 3
mm9_v1_chr11_-_107050573_107050694	0.61461	CDX1,2,4.p2	BC024874|Nol11|68979|nucleolar protein 11	AK005123|Nol11|68979|nucleolar protein 11	AK038696|Nol11|68979|nucleolar protein 11	AK078524|Nol11|68979|nucleolar protein 11	AK157743|Nol11|68979|nucleolar protein 11	AK076704|Nol11|68979|nucleolar protein 11	NM_001161329|Nol11|68979|nucleolar protein 11	NM_133702|Nol11|68979|nucleolar protein 11
mm9_v1_chr9_-_64020685_64020737	0.611003	CDX1,2,4.p2	BC027435|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)	AK050917|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)	AK009559|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)	AK019825|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)	AK012004|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)	NM_026507|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)
mm9_v1_chr16_+_48310386_48310386	0.609577	CDX1,2,4.p2	AY561246|Dppa2|73703|developmental pluripotency associated 2	NM_028615|Dppa2|73703|developmental pluripotency associated 2
mm9_v1_chr7_-_125629996_125630002	0.609356	CDX1,2,4.p2	AK164927|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2	AK081844|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm9_v1_chr1_-_72258684_72258880	0.608716	CDX1,2,4.p2	AY628210|Mreg|381269|melanoregulin	BC068125|Mreg|381269|melanoregulin	NM_001005423|Mreg|381269|melanoregulin
mm9_v1_chr5_+_34185760_34185844	0.607442	CDX1,2,4.p2	NM_001081102|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_001177884|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_175231|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	BC079668|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)
mm9_v1_chr11_+_29618696_29618843	0.606384	CDX1,2,4.p2	AF326337|Rtn4|68585|reticulon 4
mm9_v1_chr2_-_4544898_4544915	0.604647	CDX1,2,4.p2	BC019370|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)
mm9_v1_chr3_+_84756090_84756352	0.60391	CDX1,2,4.p2	AF391192|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_080428|Fbxw7|50754|F-box and WD-40 domain protein 7	AF427101|Fbxw7|50754|F-box and WD-40 domain protein 7	BC131648|Fbxw7|50754|F-box and WD-40 domain protein 7	AB221593|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr6_+_108733075_108733279	0.603198	CDX1,2,4.p2	AK152798|Arl8b|67166|ADP-ribosylation factor-like 8B	AK144177|Arl8b|67166|ADP-ribosylation factor-like 8B	AK076292|Arl8b|67166|ADP-ribosylation factor-like 8B	AK146307|Arl8b|67166|ADP-ribosylation factor-like 8B	AK159348|Arl8b|67166|ADP-ribosylation factor-like 8B	AK170645|Arl8b|67166|ADP-ribosylation factor-like 8B	AK012024|Arl8b|67166|ADP-ribosylation factor-like 8B	AK075941|Arl8b|67166|ADP-ribosylation factor-like 8B	AK151036|Arl8b|67166|ADP-ribosylation factor-like 8B	AK149822|Arl8b|67166|ADP-ribosylation factor-like 8B	BC013719|Arl8b|67166|ADP-ribosylation factor-like 8B	AK009279|Arl8b|67166|ADP-ribosylation factor-like 8B	AK169929|Arl8b|67166|ADP-ribosylation factor-like 8B	AK005999|Arl8b|67166|ADP-ribosylation factor-like 8B	AK195129|Arl8b|67166|ADP-ribosylation factor-like 8B	AB185206|Arl8b|67166|ADP-ribosylation factor-like 8B	CT010337|Arl8b|67166|ADP-ribosylation factor-like 8B	AK203754|Arl8b|67166|ADP-ribosylation factor-like 8B
mm9_v1_chr4_+_134676559_134676571	0.602312	CDX1,2,4.p2	NM_019732|Runx3|12399|runt related transcription factor 3	AK155436|Runx3|12399|runt related transcription factor 3	AK155802|Runx3|12399|runt related transcription factor 3
mm9_v1_chr10_+_32803288_32803366	0.601952	CDX1,2,4.p2	NM_029726|Trdn|76757|triadin	AK009816|Trdn|76757|triadin	AF223415|Trdn|76757|triadin	AF223416|Trdn|76757|triadin	BC034343|Trdn|76757|triadin	AF223417|Trdn|76757|triadin
mm9_v1_chr17_-_33961403_33961506	0.60165	CDX1,2,4.p2	U11248|Rps28|54127|ribosomal protein S28	BC010987|Rps28|54127|ribosomal protein S28	AK002919|Rps28|54127|ribosomal protein S28	BC090982|Rps28|54127|ribosomal protein S28	NM_016844|Rps28|54127|ribosomal protein S28	BC125644|Rps28|54127|ribosomal protein S28	BC125646|Rps28|54127|ribosomal protein S28
mm9_v1_chr2_+_61416589_61416667	0.601188	CDX1,2,4.p2	U59864|Tank|21353|TRAF family member-associated Nf-kappa B activator	NM_011529|Tank|21353|TRAF family member-associated Nf-kappa B activator	BC052685|Tank|21353|TRAF family member-associated Nf-kappa B activator
mm9_v1_chr17_+_34341417_34341460	0.601183	CDX1,2,4.p2	NM_011530|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK159200|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
mm9_v1_chr5_+_38651466_38651637	0.600473	CDX1,2,4.p2	BC025197|Tmem128|66309|transmembrane protein 128	AK012789|Tmem128|66309|transmembrane protein 128	AK013227|Tmem128|66309|transmembrane protein 128	AK080853|Tmem128|66309|transmembrane protein 128	NM_025480|Tmem128|66309|transmembrane protein 128	AK162257|Tmem128|66309|transmembrane protein 128	AK076679|Tmem128|66309|transmembrane protein 128	BC060969|Tmem128|66309|transmembrane protein 128	BC110310|Tmem128|66309|transmembrane protein 128
mm9_v1_chr8_+_13869640_13869740	0.600197	CDX1,2,4.p2	NM_181854|Zfp828|101994|zinc finger protein 828	AK132164|Zfp828|101994|zinc finger protein 828	AK170835|Zfp828|101994|zinc finger protein 828	AK139963|Zfp828|101994|zinc finger protein 828	AK133990|Zfp828|101994|zinc finger protein 828	BC028991|Zfp828|101994|zinc finger protein 828	AK129444|Zfp828|101994|zinc finger protein 828
mm9_v1_chr1_-_196957694_196957780	0.598911	CDX1,2,4.p2	AK017702|Cr1l|12946|complement component (3b/4b) receptor 1-like	AK004825|Cr1l|12946|complement component (3b/4b) receptor 1-like	NM_013499|Cr1l|12946|complement component (3b/4b) receptor 1-like
mm9_v1_chr10_-_78180902_78181043	0.595797	CDX1,2,4.p2	AJ007750|Casp14|12365|caspase 14	BC101959|Casp14|12365|caspase 14	BC101960|Casp14|12365|caspase 14	BC103555|Casp14|12365|caspase 14	BC103556|Casp14|12365|caspase 14	AK081645|Casp14|12365|caspase 14	NM_009809|Casp14|12365|caspase 14
mm9_v1_chr18_-_32719516_32719687	0.595398	CDX1,2,4.p2	AK002769|Gypc|71683|glycophorin C	AK082930|Gypc|71683|glycophorin C	AK152607|Gypc|71683|glycophorin C	AK159730|Gypc|71683|glycophorin C	BC027408|Gypc|71683|glycophorin C	AK089652|Gypc|71683|glycophorin C	AY234183|Gypc|71683|glycophorin C	NM_001048207|Gypc|71683|glycophorin C
mm9_v1_chr18_-_35821788_35821845	0.594849	CDX1,2,4.p2	BC060950|Spata24|71242|spermatogenesis associated 24	AK017218|Spata24|71242|spermatogenesis associated 24	AK016341|Spata24|71242|spermatogenesis associated 24	AK012241|Spata24|71242|spermatogenesis associated 24	AY730532|Spata24|71242|spermatogenesis associated 24	NM_027733|Spata24|71242|spermatogenesis associated 24	NM_029485|Spata24|71242|spermatogenesis associated 24
mm9_v1_chr5_-_149363989_149364264	0.593595	CDX1,2,4.p2	BC025595|Ubl3|24109|ubiquitin-like 3	AK145952|Ubl3|24109|ubiquitin-like 3
mm9_v1_chr6_-_99676346_99676385	0.592769	CDX1,2,4.p2	AK015462|Prok2|50501|prokineticin 2	BC116911|Prok2|50501|prokineticin 2	BC144863|Prok2|50501|prokineticin 2	AF487280|Prok2|50501|prokineticin 2	AF182064|Prok2|50501|prokineticin 2	AF182065|Prok2|50501|prokineticin 2	AF182066|Prok2|50501|prokineticin 2	NM_001037539|Prok2|50501|prokineticin 2	NM_001170419|Prok2|50501|prokineticin 2	NM_015768|Prok2|50501|prokineticin 2
mm9_v1_chr4_-_141381906_141381921	0.589222	CDX1,2,4.p2	BC026552|Cela2a|13706|chymotrypsin-like elastase family, member 2A	NM_007919|Cela2a|13706|chymotrypsin-like elastase family, member 2A	X04573|Cela2a|13706|chymotrypsin-like elastase family, member 2A
mm9_v1_chr6_+_113342490_113342490	0.588664	CDX1,2,4.p2	AM690746|Ttll3|101100|tubulin tyrosine ligase-like family, member 3	NM_133923|Ttll3|101100|tubulin tyrosine ligase-like family, member 3
mm9_v1_chrY_-_622984_622997	0.588105	CDX1,2,4.p2	BC021453|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
mm9_v1_chr18_+_35966147_35966251	0.587642	CDX1,2,4.p2	AK075844|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2
mm9_v1_chr1_+_174451244_174451278	0.584755	CDX1,2,4.p2	NM_027972|Ccdc19|71870|coiled-coil domain containing 19	AK006449|Ccdc19|71870|coiled-coil domain containing 19	BC151048|Ccdc19|71870|coiled-coil domain containing 19	BC151055|Ccdc19|71870|coiled-coil domain containing 19
mm9_v1_chr4_+_148478321_148478359	0.583623	CDX1,2,4.p2	AK051011|Dffa|13347|DNA fragmentation factor, alpha subunit	AB009375|Dffa|13347|DNA fragmentation factor, alpha subunit	AB009376|Dffa|13347|DNA fragmentation factor, alpha subunit
mm9_v1_chr1_+_95757920_95757920	0.583298	CDX1,2,4.p2	AK144526|Gal3st2|381334|galactose-3-O-sulfotransferase 2	AK165692|Gal3st2|381334|galactose-3-O-sulfotransferase 2	NM_199366|Gal3st2|381334|galactose-3-O-sulfotransferase 2
mm9_v1_chr2_+_85815369_85815369	0.57657	CDX1,2,4.p2	BC150841|Olfr1029|258154|olfactory receptor 1029	NM_001011852|Olfr1029|258154|olfactory receptor 1029
mm9_v1_chr1_+_58267240_58267313	0.576133	CDX1,2,4.p2	AK158427|Aox4|71872|aldehyde oxidase 4	NM_023631|Aox4|71872|aldehyde oxidase 4	AK160953|Aox4|71872|aldehyde oxidase 4	AK081746|Aox4|71872|aldehyde oxidase 4	AF233581|Aox4|71872|aldehyde oxidase 4	BC117975|Aox4|71872|aldehyde oxidase 4	BC117976|Aox4|71872|aldehyde oxidase 4
mm9_v1_chr8_-_26958108_26958165	0.575179	CDX1,2,4.p2	AK145967|Ash2l|23808|ash2 (absent, small, or homeotic)-like (Drosophila)	AK146756|Ash2l|23808|ash2 (absent, small, or homeotic)-like (Drosophila)	AK145576|Ash2l|23808|ash2 (absent, small, or homeotic)-like (Drosophila)	AK145790|Ash2l|23808|ash2 (absent, small, or homeotic)-like (Drosophila)	NM_001080793|Ash2l|23808|ash2 (absent, small, or homeotic)-like (Drosophila)	AK146254|Ash2l|23808|ash2 (absent, small, or homeotic)-like (Drosophila)
mm9_v1_chr1_+_66747396_66747477	0.573127	CDX1,2,4.p2	AK150008|Rpe|66646|ribulose-5-phosphate-3-epimerase	BC019126|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK029088|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK007735|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK017774|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK088152|Rpe|66646|ribulose-5-phosphate-3-epimerase	NM_025683|Rpe|66646|ribulose-5-phosphate-3-epimerase	Z78161|Rpe|66646|ribulose-5-phosphate-3-epimerase	BC006953|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK185217|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK193547|Rpe|66646|ribulose-5-phosphate-3-epimerase
mm9_v1_chr10_-_82996799_82996825	0.572034	CDX1,2,4.p2	AK046198|Aldh1l2|216188|aldehyde dehydrogenase 1 family, member L2	BC034531|Aldh1l2|216188|aldehyde dehydrogenase 1 family, member L2	AK086413|Aldh1l2|216188|aldehyde dehydrogenase 1 family, member L2
mm9_v1_chr5_-_65726802_65726885	0.57116	CDX1,2,4.p2	U07157|Rfc1|19687|replication factor C (activator 1) 1	X72711|Rfc1|19687|replication factor C (activator 1) 1	BC085174|Rfc1|19687|replication factor C (activator 1) 1	U01222|Rfc1|19687|replication factor C (activator 1) 1	U36441|Rfc1|19687|replication factor C (activator 1) 1	BC085173|Rfc1|19687|replication factor C (activator 1) 1	AK136937|Rfc1|19687|replication factor C (activator 1) 1	AK132028|Rfc1|19687|replication factor C (activator 1) 1	AK146164|Rfc1|19687|replication factor C (activator 1) 1	AK146314|Rfc1|19687|replication factor C (activator 1) 1	NM_011258|Rfc1|19687|replication factor C (activator 1) 1	U15037|Rfc1|19687|replication factor C (activator 1) 1
mm9_v1_chr5_-_72559220_72559438	0.570427	CDX1,2,4.p2	AK017777|Commd8|27784|COMM domain containing 8	AK013015|Commd8|27784|COMM domain containing 8	AK170011|Commd8|27784|COMM domain containing 8	AK013371|Commd8|27784|COMM domain containing 8	BC098183|Commd8|27784|COMM domain containing 8	AK158078|Commd8|27784|COMM domain containing 8	AK009275|Commd8|27784|COMM domain containing 8	AK151560|Commd8|27784|COMM domain containing 8	AK012653|Commd8|27784|COMM domain containing 8	AK077934|Commd8|27784|COMM domain containing 8	NM_178599|Commd8|27784|COMM domain containing 8
mm9_v1_chr8_+_22301955_22301998	0.570115	CDX1,2,4.p2	AK008589|Defa22|382059|defensin, alpha, 22	NM_207658|Defa22|382059|defensin, alpha, 22	AY746427|Defa22|382059|defensin, alpha, 22
mm9_v1_chr13_+_43497279_43497424	0.569688	CDX1,2,4.p2	AK140839|Nol7|70078|nucleolar protein 7
mm9_v1_chrX_-_143838294_143838374	0.568257	CDX1,2,4.p2	BC003723|Il13ra2|16165|interleukin 13 receptor, alpha 2	NM_008356|Il13ra2|16165|interleukin 13 receptor, alpha 2	U65747|Il13ra2|16165|interleukin 13 receptor, alpha 2
mm9_v1_chr5_+_115956682_115956792	0.567259	CDX1,2,4.p2	AK171226|Pxn|19303|paxillin	AK148060|Pxn|19303|paxillin	NM_011223|Pxn|19303|paxillin	NM_133915|Pxn|19303|paxillin	AK149933|Pxn|19303|paxillin	AK171436|Pxn|19303|paxillin	BC025493|Pxn|19303|paxillin	AK167299|Pxn|19303|paxillin	AF293882|Pxn|19303|paxillin
mm9_v1_chr16_-_89048013_89048143	0.567203	CDX1,2,4.p2	AF345293|Krtap16-10|71369|keratin associated protein 16-10	BC132612|Krtap16-8|68484|keratin associated protein 16-8	AF345298|Krtap16-8|68484|keratin associated protein 16-8	BC059086|Krtap16-8|68484|keratin associated protein 16-8	AK003281|Krtap16-8|68484|keratin associated protein 16-8	NM_130856|Krtap16-8|68484|keratin associated protein 16-8
mm9_v1_chr2_+_65683823_65683911	0.566601	CDX1,2,4.p2	NM_153409|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	NM_178634|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	EF210820|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK039150|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK082649|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK020730|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK080761|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	BC055701|Csrnp3|77771|cysteine-serine-rich nuclear protein 3
mm9_v1_chr4_+_128365981_128366038	0.566118	CDX1,2,4.p2	NM_018774|Phc2|54383|polyhomeotic-like 2 (Drosophila)	BC057571|Phc2|54383|polyhomeotic-like 2 (Drosophila)
mm9_v1_chr11_-_97643677_97643690	0.565725	CDX1,2,4.p2	AK168133|Rpl23|65019|ribosomal protein L23	AF287271|Rpl23|65019|ribosomal protein L23	BC025918|Rpl23|65019|ribosomal protein L23	BC081448|Rpl23|65019|ribosomal protein L23
mm9_v1_chr6_-_129610573_129610706	0.56257	CDX1,2,4.p2	AF109785|Klrc2|16642|killer cell lectin-like receptor subfamily C, member 2	NM_010653|Klrc2|16642|killer cell lectin-like receptor subfamily C, member 2	AK036555|Klrc2|16642|killer cell lectin-like receptor subfamily C, member 2	AF106011|Klrc2|16642|killer cell lectin-like receptor subfamily C, member 2	NM_001098669|Klrc2|16642|killer cell lectin-like receptor subfamily C, member 2	AK040721|Klrc2|16642|killer cell lectin-like receptor subfamily C, member 2	AF106010|Klrc2|16642|killer cell lectin-like receptor subfamily C, member 2
mm9_v1_chr8_+_119873069_119873069	0.562502	CDX1,2,4.p2	AK016712|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene	NM_028941|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr8_+_72356545_72356674	0.561853	CDX1,2,4.p2	AK076968|Pbx4|80720|pre-B-cell leukemia homeobox 4	AK010506|Pbx4|80720|pre-B-cell leukemia homeobox 4	AK038786|Pbx4|80720|pre-B-cell leukemia homeobox 4	BC032875|Pbx4|80720|pre-B-cell leukemia homeobox 4	AJ300184|Pbx4|80720|pre-B-cell leukemia homeobox 4	NM_001024954|Pbx4|80720|pre-B-cell leukemia homeobox 4	AJ300183|Pbx4|80720|pre-B-cell leukemia homeobox 4
mm9_v1_chr12_+_82047269_82047362	0.561437	CDX1,2,4.p2	AK088358|Srsf5|20384|serine/arginine-rich splicing factor 5
mm9_v1_chr5_+_32761610_32761706	0.560634	CDX1,2,4.p2	AK004686|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	M27073|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK160743|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	BC046832|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK168512|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK088893|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr3_-_95622554_95622875	0.560092	CDX1,2,4.p2	AK129150|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK154692|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	BC067054|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK083674|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK087157|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK012860|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK015972|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	NM_001081293|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2
mm9_v1_chr13_-_13097649_13097665	0.558302	CDX1,2,4.p2	BC064771|Prl2c2|18811|prolactin family 2, subfamily c, member 2	BC080826|Prl2c2|18811|prolactin family 2, subfamily c, member 2
mm9_v1_chr2_-_143814199_143814217	0.557088	CDX1,2,4.p2	AK019964|Rrbp1|81910|ribosome binding protein 1
mm9_v1_chr3_+_63780058_63780135	0.55699	CDX1,2,4.p2	AK143197|Gmps|229363|guanine monophosphate synthetase	NM_001033300|Gmps|229363|guanine monophosphate synthetase	AK169701|Gmps|229363|guanine monophosphate synthetase	AK169043|Gmps|229363|guanine monophosphate synthetase	AK167857|Gmps|229363|guanine monophosphate synthetase	AK049755|Gmps|229363|guanine monophosphate synthetase	BC138411|Gmps|229363|guanine monophosphate synthetase	BC138412|Gmps|229363|guanine monophosphate synthetase	AK168239|Gmps|229363|guanine monophosphate synthetase
mm9_v1_chr10_+_87841876_87842156	0.556644	CDX1,2,4.p2	BC060638|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	AK140867|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	AK173132|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	NM_001004164|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
mm9_v1_chr9_-_119213954_119213965	0.555886	CDX1,2,4.p2	AK031790|Oxsr1|108737|oxidative-stress responsive 1	AK075837|Oxsr1|108737|oxidative-stress responsive 1	NM_133985|Oxsr1|108737|oxidative-stress responsive 1
mm9_v1_chr19_-_11715256_11715340	0.555686	CDX1,2,4.p2	BC117013|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3	BC117015|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3	BC144853|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3	AF280401|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3	AF321128|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3	AY184359|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3	AK036464|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3	NM_133246|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3	AK158372|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3
mm9_v1_chr19_-_17414057_17414057	0.555209	CDX1,2,4.p2	NM_001136484|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	U19265|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2
mm9_v1_chr4_+_102243272_102243317	0.553882	CDX1,2,4.p2	AK011999|Pde4b|18578|phosphodiesterase 4B, cAMP specific	BC007155|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr8_+_55686133_55686133	0.553065	CDX1,2,4.p2	AF395083|Spata4|69281|spermatogenesis associated 4	AF530515|Spata4|69281|spermatogenesis associated 4	AK005612|Spata4|69281|spermatogenesis associated 4	BC048650|Spata4|69281|spermatogenesis associated 4	NM_133711|Spata4|69281|spermatogenesis associated 4
mm9_v1_chr9_-_21043659_21043781	0.552242	CDX1,2,4.p2	AK150437|Keap1|50868|kelch-like ECH-associated protein 1	AK152142|Keap1|50868|kelch-like ECH-associated protein 1	AK004738|Keap1|50868|kelch-like ECH-associated protein 1	NM_001110305|Keap1|50868|kelch-like ECH-associated protein 1	NM_001110306|Keap1|50868|kelch-like ECH-associated protein 1	NM_001110307|Keap1|50868|kelch-like ECH-associated protein 1	NM_016679|Keap1|50868|kelch-like ECH-associated protein 1
mm9_v1_chr14_+_115491514_115491644	0.551198	CDX1,2,4.p2	BC115712|Gpc5|103978|glypican 5
mm9_v1_chr6_-_53928655_53928666	0.550611	CDX1,2,4.p2	BC137839|Cpvl|71287|carboxypeptidase, vitellogenic-like	BC144966|Cpvl|71287|carboxypeptidase, vitellogenic-like	NM_027749|Cpvl|71287|carboxypeptidase, vitellogenic-like	AK017087|Cpvl|71287|carboxypeptidase, vitellogenic-like
mm9_v1_chr4_+_94260340_94260340	0.550351	CDX1,2,4.p2	NM_001081019|Gm12657|667250|predicted gene 12657
mm9_v1_chr1_-_121891786_121891786	0.549947	CDX1,2,4.p2	EF632061|Gm101|226356|predicted gene 101	NM_001115074|Gm101|226356|predicted gene 101
mm9_v1_chr1_+_87423176_87423243	0.549103	CDX1,2,4.p2	AK156961|Csprs|114564|component of Sp100-rs
mm9_v1_chr4_-_94316806_94316834	0.548955	CDX1,2,4.p2	BC061228|Lrrc19|100061|leucine rich repeat containing 19	AK033594|Lrrc19|100061|leucine rich repeat containing 19	NM_175305|Lrrc19|100061|leucine rich repeat containing 19
mm9_v1_chr16_-_22657283_22657317	0.547014	CDX1,2,4.p2	AK083258|Dgkg|110197|diacylglycerol kinase, gamma	NM_138650|Dgkg|110197|diacylglycerol kinase, gamma
mm9_v1_chr2_-_155479292_155479385	0.546528	CDX1,2,4.p2	BC003931|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein
mm9_v1_chr17_-_36779586_36779610	0.544588	CDX1,2,4.p2	BC106996|H2-M9|14997|histocompatibility 2, M region locus 9	AF469488|H2-M9|14997|histocompatibility 2, M region locus 9	AF539595|H2-M9|14997|histocompatibility 2, M region locus 9	NM_008205|H2-M9|14997|histocompatibility 2, M region locus 9	AK080256|H2-M9|14997|histocompatibility 2, M region locus 9
mm9_v1_chrX_-_133278223_133278228	0.544485	CDX1,2,4.p2	AK161610|Morf4l2|56397|mortality factor 4 like 2	AK166637|Morf4l2|56397|mortality factor 4 like 2	NM_001168228|Morf4l2|56397|mortality factor 4 like 2	NM_001168230|Morf4l2|56397|mortality factor 4 like 2
mm9_v1_chr11_+_65620669_65620745	0.543323	CDX1,2,4.p2	AK007308|Zkscan6|52712|zinc finger with KRAB and SCAN domains 6	AK015125|Zkscan6|52712|zinc finger with KRAB and SCAN domains 6	BC096688|Zkscan6|52712|zinc finger with KRAB and SCAN domains 6	BC043075|Zkscan6|52712|zinc finger with KRAB and SCAN domains 6	NM_026107|Zkscan6|52712|zinc finger with KRAB and SCAN domains 6
mm9_v1_chr6_-_135204232_135204353	0.542296	CDX1,2,4.p2	D87325|Gsg1|14840|germ cell-specific gene 1	NM_001080553|Gsg1|14840|germ cell-specific gene 1	NM_010352|Gsg1|14840|germ cell-specific gene 1
mm9_v1_chr8_+_47254909_47254909	0.541574	CDX1,2,4.p2	BC058092|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	NM_025747|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene
mm9_v1_chr9_-_7387992_7388025	0.540598	CDX1,2,4.p2	AJ278461|Mmp1b|83996|matrix metallopeptidase 1b (interstitial collagenase)	NM_032007|Mmp1b|83996|matrix metallopeptidase 1b (interstitial collagenase)
mm9_v1_chr1_-_181682859_181682906	0.53977	CDX1,2,4.p2	AK016646|Ahctf1|226747|AT hook containing transcription factor 1
mm9_v1_chr19_-_60302571_60302605	0.539603	CDX1,2,4.p2	BC056640|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed	AK011404|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed	AK044853|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed	AK075914|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed	NM_029648|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed	BC048505|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed
mm9_v1_chr11_-_17853850_17853896	0.538082	CDX1,2,4.p2	BC028916|Etaa1|68145|Ewing's tumor-associated antigen 1	AK034138|Etaa1|68145|Ewing's tumor-associated antigen 1	AK019965|Etaa1|68145|Ewing's tumor-associated antigen 1	NM_026576|Etaa1|68145|Ewing's tumor-associated antigen 1
mm9_v1_chr7_+_97574821_97574821	0.537593	CDX1,2,4.p2	NM_027298|Ccdc89|70054|coiled-coil domain containing 89
mm9_v1_chr15_-_95358989_95359075	0.536629	CDX1,2,4.p2	AK039790|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr10_-_70747929_70748034	0.536531	CDX1,2,4.p2	AK144468|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	AK043167|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	BC019464|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	AK148364|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	NM_145420|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)
mm9_v1_chr15_+_85690136_85690174	0.536039	CDX1,2,4.p2	AK012870|Gtse1|29870|G two S phase expressed protein 1	NM_001168672|Gtse1|29870|G two S phase expressed protein 1	AK081582|Gtse1|29870|G two S phase expressed protein 1
mm9_v1_chr6_+_127403631_127403740	0.534807	CDX1,2,4.p2	AK133697|Parp11|101187|poly (ADP-ribose) polymerase family, member 11	BC040269|Parp11|101187|poly (ADP-ribose) polymerase family, member 11	NM_181402|Parp11|101187|poly (ADP-ribose) polymerase family, member 11
mm9_v1_chr2_-_164653995_164654033	0.533939	CDX1,2,4.p2	BC116354|1700020C07Rik|75642|RIKEN cDNA 1700020C07 gene	BC116355|1700020C07Rik|75642|RIKEN cDNA 1700020C07 gene	AK006145|1700020C07Rik|75642|RIKEN cDNA 1700020C07 gene	NM_029370|1700020C07Rik|75642|RIKEN cDNA 1700020C07 gene
mm9_v1_chr5_+_140895245_140895309	0.532686	CDX1,2,4.p2	AK033722|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	AK170938|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	NM_133916|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	AK167618|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	AK089978|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	BC031704|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	BC023767|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	BC051065|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B
mm9_v1_chr13_-_12892317_12892348	0.532286	CDX1,2,4.p2	BC100299|Prl2c4|26421|prolactin family 2, subfamily c, member 4	BC058816|Prl2c4|26421|prolactin family 2, subfamily c, member 4	NM_011954|Prl2c4|26421|prolactin family 2, subfamily c, member 4	BC064772|Prl2c4|26421|prolactin family 2, subfamily c, member 4	BC132078|Prl2c3|18812|prolactin family 2, subfamily c, member 3	BC132080|Prl2c3|18812|prolactin family 2, subfamily c, member 3	AK145995|Prl2c3|18812|prolactin family 2, subfamily c, member 3	K03235|Prl2c3|18812|prolactin family 2, subfamily c, member 3	AK164068|Prl2c3|18812|prolactin family 2, subfamily c, member 3	NM_011118|Prl2c3|18812|prolactin family 2, subfamily c, member 3
mm9_v1_chr9_-_46128068_46128068	0.531842	CDX1,2,4.p2	AK016488|4931429L15Rik|74361|RIKEN cDNA 4931429L15 gene	NM_183104|4931429L15Rik|74361|RIKEN cDNA 4931429L15 gene
mm9_v1_chr5_-_110698882_110698900	0.531485	CDX1,2,4.p2	AK012159|Pgam5|72542|phosphoglycerate mutase family member 5	AK034588|Pgam5|72542|phosphoglycerate mutase family member 5	BC138924|Pgam5|72542|phosphoglycerate mutase family member 5	BC138925|Pgam5|72542|phosphoglycerate mutase family member 5	BC145467|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr16_-_89508565_89508569	0.531449	CDX1,2,4.p2	AK017387|Krtap7-1|71363|keratin associated protein 7-1	NM_027771|Krtap7-1|71363|keratin associated protein 7-1
mm9_v1_chr1_+_174451174_174451236	0.529883	CDX1,2,4.p2	BC150929|Ccdc19|71870|coiled-coil domain containing 19
mm9_v1_chrX_-_133277456_133277461	0.528287	CDX1,2,4.p2	NM_001168227|Morf4l2|56397|mortality factor 4 like 2
mm9_v1_chr16_-_26526854_26526915	0.525929	CDX1,2,4.p2	AK142524|Tmem207|100043057|transmembrane protein 207	NM_001101640|Tmem207|100043057|transmembrane protein 207
mm9_v1_chr16_+_32179885_32179885	0.524317	CDX1,2,4.p2	AK157452|Bex6|328660|brain expressed gene 6	AY833559|Bex6|328660|brain expressed gene 6	NM_001033539|Bex6|328660|brain expressed gene 6
mm9_v1_chr19_+_36158191_36158279	0.524142	CDX1,2,4.p2	NM_019428|Rpp30|54364|ribonuclease P/MRP 30 subunit (human)	AK004137|Rpp30|54364|ribonuclease P/MRP 30 subunit (human)	BC062146|Rpp30|54364|ribonuclease P/MRP 30 subunit (human)	U95123|Rpp30|54364|ribonuclease P/MRP 30 subunit (human)	AK160536|Rpp30|54364|ribonuclease P/MRP 30 subunit (human)	AK169253|Rpp30|54364|ribonuclease P/MRP 30 subunit (human)
mm9_v1_chr16_-_19883999_19884017	0.523521	CDX1,2,4.p2	AK020919|A930003A15Rik|68162|RIKEN cDNA A930003A15 gene
mm9_v1_chr9_+_99370839_99370876	0.522132	CDX1,2,4.p2	BC068205|1600029I14Rik|69797|RIKEN cDNA 1600029I14 gene	AK005560|1600029I14Rik|69797|RIKEN cDNA 1600029I14 gene
mm9_v1_chr2_+_173348092_173348148	0.520737	CDX1,2,4.p2	NM_028158|1700021F07Rik|72221|RIKEN cDNA 1700021F07 gene	BC050790|1700021F07Rik|72221|RIKEN cDNA 1700021F07 gene	AK006200|1700021F07Rik|72221|RIKEN cDNA 1700021F07 gene
mm9_v1_chr18_-_67712374_67712430	0.519205	CDX1,2,4.p2	BC058669|Spire1|68166|spire homolog 1 (Drosophila)	NM_194355|Spire1|68166|spire homolog 1 (Drosophila)	BC094375|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chr10_+_111520409_111520427	0.518806	CDX1,2,4.p2	AK014846|Glipr1l2|67537|GLI pathogenesis-related 1 like 2	AK161292|Glipr1l2|67537|GLI pathogenesis-related 1 like 2	BC118017|Glipr1l2|67537|GLI pathogenesis-related 1 like 2	NM_026223|Glipr1l2|67537|GLI pathogenesis-related 1 like 2	AK015834|Glipr1l2|67537|GLI pathogenesis-related 1 like 2
mm9_v1_chr5_+_3236388_3236389	0.518695	CDX1,2,4.p2	AK146116|Gm15772|100034726|ribosomal protein L26 pseudogene	X80699|Gm15772|100034726|ribosomal protein L26 pseudogene
mm9_v1_chr3_+_88940542_88940546	0.518501	CDX1,2,4.p2	AK149508|Pklr|18770|pyruvate kinase liver and red blood cell	NM_001099779|Pklr|18770|pyruvate kinase liver and red blood cell	AK149524|Pklr|18770|pyruvate kinase liver and red blood cell
mm9_v1_chr10_+_79620689_79620701	0.517113	CDX1,2,4.p2	AK013865|Midn|59090|midnolin
mm9_v1_chr2_-_124949149_124949396	0.51676	CDX1,2,4.p2	BC060946|Myef2|17876|myelin basic protein expression factor 2, repressor	AK129336|Myef2|17876|myelin basic protein expression factor 2, repressor	AK142363|Myef2|17876|myelin basic protein expression factor 2, repressor	AK143230|Myef2|17876|myelin basic protein expression factor 2, repressor	AK048404|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_001162417|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_001162418|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_010852|Myef2|17876|myelin basic protein expression factor 2, repressor	AK012133|Myef2|17876|myelin basic protein expression factor 2, repressor
mm9_v1_chr12_-_88784769_88784966	0.516693	CDX1,2,4.p2	BC050856|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	BC094381|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	AK012518|Nrp|654309|neural regeneration protein	AK143105|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	AK042102|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	AK049549|Nrp|654309|neural regeneration protein	AK144828|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	NM_001102565|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	BC119399|Nrp|654309|neural regeneration protein	BC119401|Nrp|654309|neural regeneration protein	AY753183|Nrp|654309|neural regeneration protein	NM_001013372|Nrp|654309|neural regeneration protein
mm9_v1_chr2_+_163428044_163428072	0.516493	CDX1,2,4.p2	AK039450|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_029512|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_181734|Ttpal|76080|tocopherol (alpha) transfer protein-like
mm9_v1_chr13_-_58228079_58228222	0.514875	CDX1,2,4.p2	AK004260|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr19_-_14671832_14671910	0.514406	CDX1,2,4.p2	AF229633|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chr6_-_114987860_114987905	0.513553	CDX1,2,4.p2	AK160774|1500001M20Rik|68971|RIKEN cDNA 1500001M20 gene	NM_026894|1500001M20Rik|68971|RIKEN cDNA 1500001M20 gene	AK005100|1500001M20Rik|68971|RIKEN cDNA 1500001M20 gene
mm9_v1_chr8_+_34807688_34807718	0.509571	CDX1,2,4.p2	AK027984|Gsr|14782|glutathione reductase
mm9_v1_chr17_+_6600795_6600934	0.509003	CDX1,2,4.p2	NM_001166627|Dynlt1f|100040531|dynein light chain Tctex-type 1F	AK168478|Dynlt1c|100040563|dynein light chain Tctex-type 1C	NM_001166630|Dynlt1c|100040563|dynein light chain Tctex-type 1C	AK005569|Dynlt1f|100040531|dynein light chain Tctex-type 1F	M25825|Dynlt1b|21648|dynein light chain Tctex-type 1D	EF110999|Dynlt1c|100040563|dynein light chain Tctex-type 1C
mm9_v1_chr9_+_96159123_96159160	0.507896	CDX1,2,4.p2	NM_001184709|Tfdp2|211586|transcription factor Dp 2	AK033356|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr1_-_97564064_97564129	0.506882	CDX1,2,4.p2	AK041723|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	AK003690|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm9_v1_chr6_-_136730254_136730285	0.506167	CDX1,2,4.p2	BC099968|Gucy2c|14917|guanylate cyclase 2c	NM_001127318|Gucy2c|14917|guanylate cyclase 2c	NM_145067|Gucy2c|14917|guanylate cyclase 2c	AK136496|Gucy2c|14917|guanylate cyclase 2c
mm9_v1_chr11_-_103815361_103815405	0.505919	CDX1,2,4.p2	BC006627|Nsf|18195|N-ethylmaleimide sensitive fusion protein	NM_008740|Nsf|18195|N-ethylmaleimide sensitive fusion protein
mm9_v1_chr19_+_4082487_4082487	0.505098	CDX1,2,4.p2	AK007488|Cabp2|29866|calcium binding protein 2	NM_001160253|Cabp2|29866|calcium binding protein 2
mm9_v1_chr16_-_19883985_19883989	0.504859	CDX1,2,4.p2	AK020802|A930003A15Rik|68162|RIKEN cDNA A930003A15 gene
mm9_v1_chr6_+_108733041_108733073	0.504665	CDX1,2,4.p2	NM_026011|Arl8b|67166|ADP-ribosylation factor-like 8B	AK030689|Arl8b|67166|ADP-ribosylation factor-like 8B
mm9_v1_chr7_+_130267398_130267398	0.502979	CDX1,2,4.p2	NM_144925|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr5_-_36873134_36873271	0.501331	CDX1,2,4.p2	AB064521|Tbc1d14|100855|TBC1 domain family, member 14	BC011420|Tbc1d14|100855|TBC1 domain family, member 14	AK013092|Tbc1d14|100855|TBC1 domain family, member 14	NM_001113364|Tbc1d14|100855|TBC1 domain family, member 14
mm9_v1_chr8_+_19495096_19495096	0.501014	CDX1,2,4.p2	AJ298147|Defb7|246080|defensin beta 7	NM_139220|Defb7|246080|defensin beta 7
mm9_v1_chr19_-_7008874_7009004	0.500771	CDX1,2,4.p2	BC119784|Kcnk4|16528|potassium channel, subfamily K, member 4	NM_008431|Kcnk4|16528|potassium channel, subfamily K, member 4
mm9_v1_chr3_+_10012576_10012609	0.499838	CDX1,2,4.p2	AK011551|Fabp5|16592|fatty acid binding protein 5, epidermal	AK166506|Fabp5|16592|fatty acid binding protein 5, epidermal	AK167389|Fabp5|16592|fatty acid binding protein 5, epidermal	AK008782|Fabp5|16592|fatty acid binding protein 5, epidermal	BC002008|Fabp5|16592|fatty acid binding protein 5, epidermal	BC053042|Fabp5|16592|fatty acid binding protein 5, epidermal	NM_010634|Fabp5|16592|fatty acid binding protein 5, epidermal	X70100|Fabp5|16592|fatty acid binding protein 5, epidermal	BC100543|Fabp5|16592|fatty acid binding protein 5, epidermal
mm9_v1_chr11_+_46624300_46624301	0.499427	CDX1,2,4.p2	AK080212|Timd4|276891|T-cell immunoglobulin and mucin domain containing 4	NM_178759|Timd4|276891|T-cell immunoglobulin and mucin domain containing 4	AK046560|Timd4|276891|T-cell immunoglobulin and mucin domain containing 4	AK079787|Timd4|276891|T-cell immunoglobulin and mucin domain containing 4	AK080042|Timd4|276891|T-cell immunoglobulin and mucin domain containing 4	AY376716|Timd4|276891|T-cell immunoglobulin and mucin domain containing 4	AY376717|Timd4|276891|T-cell immunoglobulin and mucin domain containing 4
mm9_v1_chr2_-_155266518_155266522	0.498201	CDX1,2,4.p2	BC083187|Ncoa6|56406|nuclear receptor coactivator 6	NM_019825|Ncoa6|56406|nuclear receptor coactivator 6	BC031113|Ncoa6|56406|nuclear receptor coactivator 6
mm9_v1_chr16_-_55843956_55843970	0.497066	CDX1,2,4.p2	AK034283|Fam55c|385658|family with sequence similarity 55, member C
mm9_v1_chr15_+_92227240_92227311	0.497058	CDX1,2,4.p2	NM_001164593|Pdzrn4|239618|PDZ domain containing RING finger 4	BC151034|Pdzrn4|239618|PDZ domain containing RING finger 4
mm9_v1_chr8_+_131238027_131238047	0.496865	CDX1,2,4.p2	AK141253|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chrX_+_53708015_53708070	0.496545	CDX1,2,4.p2	NM_172779|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	AK031945|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	BC051161|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	AK083942|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	AK160627|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
mm9_v1_chr2_+_71624985_71625139	0.496371	CDX1,2,4.p2	AK018033|Itga6|16403|integrin alpha 6	BC049132|Itga6|16403|integrin alpha 6	BC058095|Itga6|16403|integrin alpha 6	X69902|Itga6|16403|integrin alpha 6	AK034186|Itga6|16403|integrin alpha 6	NM_008397|Itga6|16403|integrin alpha 6
mm9_v1_chr6_+_56952293_56952348	0.496059	CDX1,2,4.p2	BC125532|Vmn1r6|171193|vomeronasal 1 receptor 6	BC125534|Vmn1r6|171193|vomeronasal 1 receptor 6	NM_134175|Vmn1r6|171193|vomeronasal 1 receptor 6
mm9_v1_chr15_-_76648532_76648614	0.495734	CDX1,2,4.p2	AK173232|Arhgap39|223666|Rho GTPase activating protein 39	AK141623|Arhgap39|223666|Rho GTPase activating protein 39	BC060637|Arhgap39|223666|Rho GTPase activating protein 39	NM_001168288|Arhgap39|223666|Rho GTPase activating protein 39	NM_198420|Arhgap39|223666|Rho GTPase activating protein 39
mm9_v1_chr1_+_152239986_152240102	0.494393	CDX1,2,4.p2	BC141406|Tpr|108989|translocated promoter region	BC141410|Tpr|108989|translocated promoter region
mm9_v1_chr17_-_45570655_45570685	0.494029	CDX1,2,4.p2	BC031480|Cdc5l|71702|cell division cycle 5-like (S. pombe)	NM_152810|Cdc5l|71702|cell division cycle 5-like (S. pombe)	AK004547|Cdc5l|71702|cell division cycle 5-like (S. pombe)
mm9_v1_chr14_+_14845004_14845173	0.493406	CDX1,2,4.p2	AK046679|Atxn7|246103|ataxin 7	NM_139227|Atxn7|246103|ataxin 7	BC137846|Atxn7|246103|ataxin 7
mm9_v1_chr8_+_23734514_23734514	0.491804	CDX1,2,4.p2	BC018400|Dkk4|234130|dickkopf homolog 4 (Xenopus laevis)	NM_145592|Dkk4|234130|dickkopf homolog 4 (Xenopus laevis)
mm9_v1_chr18_+_63158808_63158850	0.491746	CDX1,2,4.p2	AK217399|Napg|108123|N-ethylmaleimide sensitive fusion protein attachment protein gamma
mm9_v1_chrX_+_54465272_54465331	0.491425	CDX1,2,4.p2	BC119225|Cd40lg|21947|CD40 ligand	NM_011616|Cd40lg|21947|CD40 ligand	X65453|Cd40lg|21947|CD40 ligand	EU274582|Cd40lg|21947|CD40 ligand
mm9_v1_chr18_-_78006491_78006518	0.490835	CDX1,2,4.p2	AK076912|Haus1|225745|HAUS augmin-like complex, subunit 1	AK146923|Haus1|225745|HAUS augmin-like complex, subunit 1	BC024400|Haus1|225745|HAUS augmin-like complex, subunit 1	NM_146089|Haus1|225745|HAUS augmin-like complex, subunit 1
mm9_v1_chr7_-_25022472_25022616	0.490547	CDX1,2,4.p2	AF167316|Zfp109|56869|zinc finger protein 109	NM_020262|Zfp109|56869|zinc finger protein 109
mm9_v1_chr7_+_113957642_113957692	0.490436	CDX1,2,4.p2	AK015248|Olfr701|66786|olfactory receptor 701	AK016560|Olfr701|66786|olfactory receptor 701	NM_028910|Olfr701|66786|olfactory receptor 701	AK017036|Olfr701|66786|olfactory receptor 701
mm9_v1_chr18_+_14941735_14941757	0.48976	CDX1,2,4.p2	AK012135|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_001100449|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr11_+_46049058_46049084	0.488759	CDX1,2,4.p2	AK081240|C030019I05Rik|320116|RIKEN cDNA C030019I05 gene	NM_177075|C030019I05Rik|320116|RIKEN cDNA C030019I05 gene	BC104394|C030019I05Rik|320116|RIKEN cDNA C030019I05 gene	BC104395|C030019I05Rik|320116|RIKEN cDNA C030019I05 gene
mm9_v1_chr18_+_32975036_32975036	0.4879	CDX1,2,4.p2	AF232937|Tslp|53603|thymic stromal lymphopoietin	BC130230|Tslp|53603|thymic stromal lymphopoietin	NM_021367|Tslp|53603|thymic stromal lymphopoietin
mm9_v1_chr7_+_90780446_90780552	0.487181	CDX1,2,4.p2	AK077328|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK142503|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK080060|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK085852|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK009980|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	BC031733|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK158178|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	BC058226|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	NM_023377|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AY007808|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AF480302|Stard5|170460|StAR-related lipid transfer (START) domain containing 5
mm9_v1_chr1_-_98894136_98894144	0.485457	CDX1,2,4.p2	NM_001039475|Slco6b1|67854|solute carrier organic anion transporter family, member 6b1	AK016463|Slco6b1|67854|solute carrier organic anion transporter family, member 6b1	AY461596|Slco6b1|67854|solute carrier organic anion transporter family, member 6b1
mm9_v1_chr6_+_47827535_47827591	0.485176	CDX1,2,4.p2	NM_146175|Zfp282|101095|zinc finger protein 282	AK088531|Zfp282|101095|zinc finger protein 282	AK148038|Zfp282|101095|zinc finger protein 282
mm9_v1_chr6_-_57929295_57929295	0.484128	CDX1,2,4.p2	NM_053238|Vmn1r25|113865|vomeronasal 1 receptor 25
mm9_v1_chr7_+_73254341_73254400	0.481411	CDX1,2,4.p2	AK129255|Chsy1|269941|chondroitin sulfate synthase 1	BC128567|Chsy1|269941|chondroitin sulfate synthase 1	BC153826|Chsy1|269941|chondroitin sulfate synthase 1	BC153827|Chsy1|269941|chondroitin sulfate synthase 1	NM_001081163|Chsy1|269941|chondroitin sulfate synthase 1
mm9_v1_chr4_-_142718290_142718420	0.480752	CDX1,2,4.p2	AK136099|Prdm2|110593|PR domain containing 2, with ZNF domain
mm9_v1_chr6_-_78328836_78328858	0.479387	CDX1,2,4.p2	AK019033|Reg3d|30053|regenerating islet-derived 3 delta	AB035204|Reg3d|30053|regenerating islet-derived 3 delta	BC113760|Reg3d|30053|regenerating islet-derived 3 delta	AB028625|Reg3d|30053|regenerating islet-derived 3 delta	NM_001161741|Reg3d|30053|regenerating islet-derived 3 delta	NM_013893|Reg3d|30053|regenerating islet-derived 3 delta
mm9_v1_chr11_+_102110161_102110288	0.479336	CDX1,2,4.p2	NM_153544|BC030867|217216|cDNA sequence BC030867	AK029811|BC030867|217216|cDNA sequence BC030867	BC030867|BC030867|217216|cDNA sequence BC030867	BC108338|BC030867|217216|cDNA sequence BC030867	BC085317|BC030867|217216|cDNA sequence BC030867
mm9_v1_chr2_+_85791221_85791221	0.479152	CDX1,2,4.p2	NM_001011774|Olfr1028|257936|olfactory receptor 1028
mm9_v1_chr9_+_63450444_63450525	0.478557	CDX1,2,4.p2	AK159897|Aagab|66939|alpha- and gamma-adaptin binding protein	NM_025857|Aagab|66939|alpha- and gamma-adaptin binding protein	BC027311|Aagab|66939|alpha- and gamma-adaptin binding protein	AK017714|Aagab|66939|alpha- and gamma-adaptin binding protein
mm9_v1_chr8_-_118231677_118231736	0.477543	CDX1,2,4.p2	S74567|Maf|17132|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog	AK019255|Maf|17132|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
mm9_v1_chr8_+_114060341_114060576	0.476944	CDX1,2,4.p2	AK079338|Znrf1|170737|zinc and ring finger 1	NM_001168621|Znrf1|170737|zinc and ring finger 1	NM_001168622|Znrf1|170737|zinc and ring finger 1	NM_133206|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr11_+_110829346_110829387	0.476644	CDX1,2,4.p2	AK078905|Kcnj16|16517|potassium inwardly-rectifying channel, subfamily J, member 16	AK128942|Kcnj16|16517|potassium inwardly-rectifying channel, subfamily J, member 16	NM_010604|Kcnj16|16517|potassium inwardly-rectifying channel, subfamily J, member 16	BC033442|Kcnj16|16517|potassium inwardly-rectifying channel, subfamily J, member 16
mm9_v1_chr4_+_130219299_130219334	0.476183	CDX1,2,4.p2	BC050747|Pum1|80912|pumilio 1 (Drosophila)	AK147185|Pum1|80912|pumilio 1 (Drosophila)	AF321909|Pum1|80912|pumilio 1 (Drosophila)	BC048174|Pum1|80912|pumilio 1 (Drosophila)
mm9_v1_chr1_-_38014596_38014603	0.475937	CDX1,2,4.p2	BC119394|Lyg1|69541|lysozyme G-like 1	BC119396|Lyg1|69541|lysozyme G-like 1	AK009014|Lyg1|69541|lysozyme G-like 1	NM_027111|Lyg1|69541|lysozyme G-like 1
mm9_v1_chr10_+_120802099_120802365	0.473321	CDX1,2,4.p2	AK040524|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK049162|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK054046|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	NM_029364|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK030773|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK135016|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK170791|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	BC055328|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK087265|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK149863|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK165917|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK169485|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK165180|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK164907|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK083597|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK159562|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK197322|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK200155|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK205939|Gns|75612|glucosamine (N-acetyl)-6-sulfatase
mm9_v1_chr17_-_35325354_35325410	0.47297	CDX1,2,4.p2	U72643|Lst1|16988|leukocyte specific transcript 1	U72644|Lst1|16988|leukocyte specific transcript 1	AF000428|Lst1|16988|leukocyte specific transcript 1	BC086881|Lst1|16988|leukocyte specific transcript 1	M18187|Lst1|16988|leukocyte specific transcript 1	NM_010734|Lst1|16988|leukocyte specific transcript 1	AF000427|Lst1|16988|leukocyte specific transcript 1
mm9_v1_chr11_+_43247235_43247249	0.472735	CDX1,2,4.p2	AK047597|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)
mm9_v1_chr7_-_29678773_29678890	0.471598	CDX1,2,4.p2	AK195007|Actn4|60595|actinin alpha 4
mm9_v1_chr3_+_136333670_136333672	0.470846	CDX1,2,4.p2	AK150393|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr4_+_146927385_146927415	0.470342	CDX1,2,4.p2	NM_001014397|Gm13154|433804|predicted gene 13154	BC085112|Gm13154|433804|predicted gene 13154
mm9_v1_chr15_+_35860580_35860704	0.469377	CDX1,2,4.p2	AK007749|Vps13b|666173|vacuolar protein sorting 13B (yeast)
mm9_v1_chr11_-_102168258_102168260	0.469197	CDX1,2,4.p2	AK014791|Ubtf|21429|upstream binding transcription factor, RNA polymerase I	AK076512|Ubtf|21429|upstream binding transcription factor, RNA polymerase I
mm9_v1_chr7_-_52972399_52972455	0.468683	CDX1,2,4.p2	AK154321|Sphk2|56632|sphingosine kinase 2	BC006941|Sphk2|56632|sphingosine kinase 2
mm9_v1_chr19_+_41624128_41624128	0.46661	CDX1,2,4.p2	AK041090|Lcor|212391|ligand dependent nuclear receptor corepressor	NM_172154|Lcor|212391|ligand dependent nuclear receptor corepressor
mm9_v1_chr2_-_72931338_72931457	0.466136	CDX1,2,4.p2	
mm9_v1_chr2_-_106810547_106810547	0.465928	CDX1,2,4.p2	AK076781|2700007P21Rik|212772|RIKEN cDNA 2700007P21 gene	NM_173750|2700007P21Rik|212772|RIKEN cDNA 2700007P21 gene
mm9_v1_chr18_+_36904309_36904426	0.465393	CDX1,2,4.p2	NM_011879|Ik|24010|IK cytokine	BC006706|Ik|24010|IK cytokine	AK167238|Ik|24010|IK cytokine	BC029148|Ik|24010|IK cytokine	AK050625|Ik|24010|IK cytokine	AK029644|Ik|24010|IK cytokine	AK163766|Ik|24010|IK cytokine	AK087976|Ik|24010|IK cytokine	BC029671|Ik|24010|IK cytokine	BC029694|Ik|24010|IK cytokine	AK088908|Ik|24010|IK cytokine	AK082356|Ik|24010|IK cytokine	BC014739|Ik|24010|IK cytokine	BC026569|Ik|24010|IK cytokine	BC033356|Ik|24010|IK cytokine	AJ006130|Ik|24010|IK cytokine
mm9_v1_chr4_+_130219280_130219280	0.46399	CDX1,2,4.p2	AK052145|Pum1|80912|pumilio 1 (Drosophila)	AK161135|Pum1|80912|pumilio 1 (Drosophila)
mm9_v1_chr5_-_110698874_110698881	0.463741	CDX1,2,4.p2	AK049246|Pgam5|72542|phosphoglycerate mutase family member 5	AK169643|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr1_+_129625987_129626062	0.463437	CDX1,2,4.p2	AK143962|Acmsd|266645|amino carboxymuconate semialdehyde decarboxylase	NM_001033041|Acmsd|266645|amino carboxymuconate semialdehyde decarboxylase	BC139281|Acmsd|266645|amino carboxymuconate semialdehyde decarboxylase	AB071419|Acmsd|266645|amino carboxymuconate semialdehyde decarboxylase
mm9_v1_chr7_-_109907908_109907984	0.462537	CDX1,2,4.p2	AK014616|Olfr78|170639|olfactory receptor 78	AK028467|Olfr78|170639|olfactory receptor 78	AK036356|Olfr78|170639|olfactory receptor 78	NM_001168503|Olfr78|170639|olfactory receptor 78	NM_130866|Olfr78|170639|olfactory receptor 78
mm9_v1_chr8_-_108224931_108224989	0.462183	CDX1,2,4.p2	AK171345|Acd|497652|adrenocortical dysplasia	AK160599|Acd|497652|adrenocortical dysplasia	BC138694|Acd|497652|adrenocortical dysplasia	BC138695|Acd|497652|adrenocortical dysplasia	BC145384|Acd|497652|adrenocortical dysplasia	AK032683|Acd|497652|adrenocortical dysplasia	AK145959|Acd|497652|adrenocortical dysplasia	AK171458|Acd|497652|adrenocortical dysplasia	AK052768|Acd|497652|adrenocortical dysplasia
mm9_v1_chr17_+_29797537_29797684	0.461769	CDX1,2,4.p2	AK080379|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	NM_028791|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK049190|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK154773|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK042060|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK043733|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK088624|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK150392|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK151194|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK152276|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK152799|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK153021|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK153066|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	BC024691|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK005044|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK152452|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK198101|Ftsjd2|74157|FtsJ methyltransferase domain containing 2
mm9_v1_chr1_+_151947225_151947270	0.461595	CDX1,2,4.p2	AK144956|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	AK149820|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	AK166221|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	AK172161|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	M64291|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	AK144726|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	M94967|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	M88242|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	NM_011198|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	AK049923|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	BC052900|Ptgs2|19225|prostaglandin-endoperoxide synthase 2
mm9_v1_chr4_-_40886191_40886208	0.460839	CDX1,2,4.p2	AK188292|Bag1|12017|BCL2-associated athanogene 1
mm9_v1_chr13_-_67476668_67476698	0.460779	CDX1,2,4.p2	BC141197|Zfp456|408065|zinc finger protein 456	AK164227|Zfp456|408065|zinc finger protein 456	NM_001001186|Zfp456|408065|zinc finger protein 456
mm9_v1_chr2_-_60589953_60589966	0.460705	CDX1,2,4.p2	AK143579|Rbms1|56878|RNA binding motif, single stranded interacting protein 1	AK169352|Rbms1|56878|RNA binding motif, single stranded interacting protein 1
mm9_v1_chr17_-_6860516_6860655	0.460138	CDX1,2,4.p2	EF110999|Dynlt1c|100040563|dynein light chain Tctex-type 1C	M25825|Dynlt1b|21648|dynein light chain Tctex-type 1D	AK005569|Dynlt1f|100040531|dynein light chain Tctex-type 1F	AK168478|Dynlt1c|100040563|dynein light chain Tctex-type 1C	NM_001166630|Dynlt1c|100040563|dynein light chain Tctex-type 1C	NM_001166627|Dynlt1f|100040531|dynein light chain Tctex-type 1F
mm9_v1_chr5_-_137969610_137969651	0.458615	CDX1,2,4.p2	
mm9_v1_chrX_-_132128393_132128393	0.458358	CDX1,2,4.p2	AY260550|Nxf7|170722|nuclear RNA export factor 7	NM_130888|Nxf7|170722|nuclear RNA export factor 7
mm9_v1_chr3_-_100489321_100489392	0.457535	CDX1,2,4.p2	AK013515|Man1a2|17156|mannosidase, alpha, class 1A, member 2	U03457|Man1a2|17156|mannosidase, alpha, class 1A, member 2	U03458|Man1a2|17156|mannosidase, alpha, class 1A, member 2
mm9_v1_chr2_-_174092557_174092559	0.456777	CDX1,2,4.p2	
mm9_v1_chr3_+_82859489_82859512	0.456767	CDX1,2,4.p2	BC006750|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	BC052895|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)
mm9_v1_chr10_+_39332934_39333058	0.456118	CDX1,2,4.p2	AK037407|Traf3ip2|103213|TRAF3 interacting protein 2	BC138234|Traf3ip2|103213|TRAF3 interacting protein 2	BC138235|Traf3ip2|103213|TRAF3 interacting protein 2	AK031556|Traf3ip2|103213|TRAF3 interacting protein 2	AK098107|Traf3ip2|103213|TRAF3 interacting protein 2	BC096483|Traf3ip2|103213|TRAF3 interacting protein 2
mm9_v1_chr18_+_37571327_37571327	0.454844	CDX1,2,4.p2	NM_053135|Pcdhb10|93881|protocadherin beta 10
mm9_v1_chr8_-_4217275_4217311	0.454364	CDX1,2,4.p2	BC068157|BC068157|73072|cDNA sequence BC068157	NM_207203|BC068157|73072|cDNA sequence BC068157
mm9_v1_chr9_+_18282802_18282838	0.454292	CDX1,2,4.p2	AK018931|Mbd3l1|73503|methyl-CpG binding domain protein 3-like 1	BC049738|Mbd3l1|73503|methyl-CpG binding domain protein 3-like 1	BC061034|Mbd3l1|73503|methyl-CpG binding domain protein 3-like 1	AK006927|Mbd3l1|73503|methyl-CpG binding domain protein 3-like 1	NM_028557|Mbd3l1|73503|methyl-CpG binding domain protein 3-like 1
mm9_v1_chrX_-_51100833_51100882	0.451161	CDX1,2,4.p2	AK088930|Xlr|22441|X-linked lymphocyte-regulated complex	AK014417|3830403N18Rik|70691|RIKEN cDNA 3830403N18 gene	AK035341|Xlr|22441|X-linked lymphocyte-regulated complex	X07967|Xlr|22441|X-linked lymphocyte-regulated complex	BC005560|Xlr|22441|X-linked lymphocyte-regulated complex	AK012549|Xlr|22441|X-linked lymphocyte-regulated complex	NM_011725|Xlr|22441|X-linked lymphocyte-regulated complex	AK035025|Xlr|22441|X-linked lymphocyte-regulated complex
mm9_v1_chr6_-_48658182_48658205	0.450686	CDX1,2,4.p2	AK050328|Gimap6|231931|GTPase, IMAP family member 6	AK160244|Gimap6|231931|GTPase, IMAP family member 6	BC028779|Gimap6|231931|GTPase, IMAP family member 6
mm9_v1_chr3_+_19408594_19408651	0.44963	CDX1,2,4.p2	NM_001163536|Dnajc5b|66326|DnaJ (Hsp40) homolog, subfamily C, member 5 beta	NM_025489|Dnajc5b|66326|DnaJ (Hsp40) homolog, subfamily C, member 5 beta	AK005725|Dnajc5b|66326|DnaJ (Hsp40) homolog, subfamily C, member 5 beta	AK005749|Dnajc5b|66326|DnaJ (Hsp40) homolog, subfamily C, member 5 beta	BC049579|Dnajc5b|66326|DnaJ (Hsp40) homolog, subfamily C, member 5 beta
mm9_v1_chr16_-_85550617_85550674	0.449577	CDX1,2,4.p2	BC099957|Cyyr1|224405|cysteine and tyrosine-rich protein 1	NM_144853|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK031840|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AY061854|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK171936|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK163137|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK158088|Cyyr1|224405|cysteine and tyrosine-rich protein 1
mm9_v1_chr17_+_29272000_29272000	0.44957	CDX1,2,4.p2	AK036563|Rab44|442827|RAB44, member RAS oncogene family	NM_001002786|Rab44|442827|RAB44, member RAS oncogene family
mm9_v1_chr6_-_82889660_82889681	0.449394	CDX1,2,4.p2	AK158292|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC139232|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm9_v1_chr5_-_25211581_25211614	0.449305	CDX1,2,4.p2	AK085093|Xrcc2|57434|X-ray repair complementing defective repair in Chinese hamster cells 2	AK020192|Xrcc2|57434|X-ray repair complementing defective repair in Chinese hamster cells 2	Y17040|Xrcc2|57434|X-ray repair complementing defective repair in Chinese hamster cells 2	BC033417|Xrcc2|57434|X-ray repair complementing defective repair in Chinese hamster cells 2	NM_020570|Xrcc2|57434|X-ray repair complementing defective repair in Chinese hamster cells 2
mm9_v1_chr15_+_44289098_44289098	0.448698	CDX1,2,4.p2	AB055648|Pkhd1l1|192190|polycystic kidney and hepatic disease 1-like 1	AY219182|Pkhd1l1|192190|polycystic kidney and hepatic disease 1-like 1	NM_138674|Pkhd1l1|192190|polycystic kidney and hepatic disease 1-like 1
mm9_v1_chr3_-_144347983_144348061	0.446188	CDX1,2,4.p2	
mm9_v1_chr6_-_23600205_23600304	0.445203	CDX1,2,4.p2	BC116423|Rnf133|386611|ring finger protein 133	BC116424|Rnf133|386611|ring finger protein 133	AK028082|Rnf133|386611|ring finger protein 133	NM_198251|Rnf133|386611|ring finger protein 133
mm9_v1_chr9_-_60497537_60497561	0.444316	CDX1,2,4.p2	AK082406|Lrrc49|102747|leucine rich repeat containing 49
mm9_v1_chr14_-_59797556_59797585	0.443846	CDX1,2,4.p2	BC099536|Gm5142|380907|predicted gene 5142	AK076969|Gm5142|380907|predicted gene 5142	NM_001004158|Gm5142|380907|predicted gene 5142
mm9_v1_chrX_-_5046382_5046382	0.443773	CDX1,2,4.p2	AK132789|Mycs|17870|myc-like oncogene, s-myc protein	NM_010850|Mycs|17870|myc-like oncogene, s-myc protein
mm9_v1_chr12_-_60305853_60305917	0.443591	CDX1,2,4.p2	BC006669|Fbxo33|70611|F-box protein 33
mm9_v1_chr6_-_89890500_89890500	0.443428	CDX1,2,4.p2	NM_011684|Vmn1r45|22297|vomeronasal 1 receptor 45
mm9_v1_chrX_+_99998301_99998301	0.442916	CDX1,2,4.p2	AK016891|Dmrtc1c|71083|DMRT-like family C1c	NM_001142690|Dmrtc1c2|668357|DMRT-like family C1c2	NM_001142691|Dmrtc1c|71083|DMRT-like family C1c
mm9_v1_chr17_+_36002537_36002569	0.44265	CDX1,2,4.p2	BC025573|2310014H01Rik|76448|RIKEN cDNA 2310014H01 gene	NM_001146711|2310014H01Rik|76448|RIKEN cDNA 2310014H01 gene	BC145183|2310014H01Rik|76448|RIKEN cDNA 2310014H01 gene	BC150725|2310014H01Rik|76448|RIKEN cDNA 2310014H01 gene
mm9_v1_chr18_+_63137605_63137624	0.441492	CDX1,2,4.p2	AK090379|Napg|108123|N-ethylmaleimide sensitive fusion protein attachment protein gamma
mm9_v1_chr17_-_37004131_37004154	0.44138	CDX1,2,4.p2	BC027186|Trim15|69097|tripartite motif-containing 15	NM_001024134|Trim15|69097|tripartite motif-containing 15	AK007445|Trim15|69097|tripartite motif-containing 15	NM_001177872|Trim15|69097|tripartite motif-containing 15
mm9_v1_chr7_+_52872975_52872999	0.43854	CDX1,2,4.p2	AK137638|Fut1|14343|fucosyltransferase 1	NM_008051|Fut1|14343|fucosyltransferase 1	BC109145|Fut1|14343|fucosyltransferase 1	BC109146|Fut1|14343|fucosyltransferase 1
mm9_v1_chr7_+_27220131_27220231	0.438485	CDX1,2,4.p2	AK087843|Nlrp4a|243880|NLR family, pyrin domain containing 4A	AY355341|Nlrp4a|243880|NLR family, pyrin domain containing 4A	NM_172896|Nlrp4a|243880|NLR family, pyrin domain containing 4A	BC141342|Nlrp4a|243880|NLR family, pyrin domain containing 4A	BC141343|Nlrp4a|243880|NLR family, pyrin domain containing 4A
mm9_v1_chr7_-_56136965_56137089	0.43739	CDX1,2,4.p2	AY957576|E2f8|108961|E2F transcription factor 8
mm9_v1_chr10_+_82822948_82823029	0.436337	CDX1,2,4.p2	NM_026579|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	AK128995|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	AK049544|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	AK160350|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	AK147063|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	AK020067|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	AK162255|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	BC050904|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	BC094241|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	BC035946|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed
mm9_v1_chr17_+_47505827_47505888	0.436264	CDX1,2,4.p2	NM_001146211|Mrps10|64657|mitochondrial ribosomal protein S10	NM_001146212|Mrps10|64657|mitochondrial ribosomal protein S10	AK142675|Mrps10|64657|mitochondrial ribosomal protein S10	AK004151|Mrps10|64657|mitochondrial ribosomal protein S10	BC038917|Mrps10|64657|mitochondrial ribosomal protein S10	BC096043|Mrps10|64657|mitochondrial ribosomal protein S10
mm9_v1_chr19_+_53218486_53218486	0.435815	CDX1,2,4.p2	BC037116|Add3|27360|adducin 3 (gamma)	NM_013758|Add3|27360|adducin 3 (gamma)
mm9_v1_chr5_-_94100392_94100534	0.43567	CDX1,2,4.p2	BC085232|C87414|381654|expressed sequence C87414	AK163343|C87414|381654|expressed sequence C87414	NM_001164284|C87414|381654|expressed sequence C87414	NM_001164285|C87414|381654|expressed sequence C87414	AK139835|C87414|381654|expressed sequence C87414
mm9_v1_chr4_+_130219281_130219296	0.435331	CDX1,2,4.p2	AK163977|Pum1|80912|pumilio 1 (Drosophila)	AK122205|Pum1|80912|pumilio 1 (Drosophila)
mm9_v1_chr5_+_116009516_116009532	0.435286	CDX1,2,4.p2	AK012606|Rplp0|11837|ribosomal protein, large, P0	AK029816|Rplp0|11837|ribosomal protein, large, P0	AK161683|Rplp0|11837|ribosomal protein, large, P0	BC087887|Rplp0|11837|ribosomal protein, large, P0	BC089496|Rplp0|11837|ribosomal protein, large, P0	AK081678|Rplp0|11837|ribosomal protein, large, P0	AK002315|Rplp0|11837|ribosomal protein, large, P0	AK009767|Rplp0|11837|ribosomal protein, large, P0	AK010267|Rplp0|11837|ribosomal protein, large, P0	AK150448|Rplp0|11837|ribosomal protein, large, P0	AK159358|Rplp0|11837|ribosomal protein, large, P0	AK160541|Rplp0|11837|ribosomal protein, large, P0	AK166728|Rplp0|11837|ribosomal protein, large, P0	X15267|Rplp0|11837|ribosomal protein, large, P0	AK167240|Rplp0|11837|ribosomal protein, large, P0	BC003833|Rplp0|11837|ribosomal protein, large, P0
mm9_v1_chr11_+_30785357_30785392	0.435104	CDX1,2,4.p2	AK141614|Gpr75|237716|G protein-coupled receptor 75
mm9_v1_chr19_+_21354915_21354945	0.434904	CDX1,2,4.p2	AK185148|Zfand5|22682|zinc finger, AN1-type domain 5
mm9_v1_chr17_-_25933989_25933999	0.434891	CDX1,2,4.p2	AK087402|Metrn|70083|meteorin, glial cell differentiation regulator	NM_133719|Metrn|70083|meteorin, glial cell differentiation regulator
mm9_v1_chr3_+_87885892_87885972	0.434817	CDX1,2,4.p2	BC151102|Iqgap3|404710|IQ motif containing GTPase activating protein 3	AK050913|Iqgap3|404710|IQ motif containing GTPase activating protein 3	AK162700|Iqgap3|404710|IQ motif containing GTPase activating protein 3	BC068159|Iqgap3|404710|IQ motif containing GTPase activating protein 3	NM_001033484|Iqgap3|404710|IQ motif containing GTPase activating protein 3
mm9_v1_chr11_+_69980275_69980291	0.434442	CDX1,2,4.p2	NM_010796|Clec10a|17312|C-type lectin domain family 10, member A	S36676|Clec10a|17312|C-type lectin domain family 10, member A	BC014811|Clec10a|17312|C-type lectin domain family 10, member A
mm9_v1_chr2_-_3283840_3283862	0.433943	CDX1,2,4.p2	BC025001|Olah|99035|oleoyl-ACP hydrolase	NM_145921|Olah|99035|oleoyl-ACP hydrolase	AK087571|Olah|99035|oleoyl-ACP hydrolase
mm9_v1_chr4_+_135051891_135051982	0.433829	CDX1,2,4.p2	AK015061|4930555I21Rik|78806|RIKEN cDNA 4930555I21 gene	AK019766|4930555I21Rik|78806|RIKEN cDNA 4930555I21 gene	NM_030189|4930555I21Rik|78806|RIKEN cDNA 4930555I21 gene	BC145657|4930555I21Rik|78806|RIKEN cDNA 4930555I21 gene
mm9_v1_chr3_-_40706422_40706464	0.433678	CDX1,2,4.p2	AK077003|1700034I23Rik|73297|RIKEN cDNA 1700034I23 gene	BC117739|1700034I23Rik|73297|RIKEN cDNA 1700034I23 gene	AK006596|1700034I23Rik|73297|RIKEN cDNA 1700034I23 gene	NM_028494|1700034I23Rik|73297|RIKEN cDNA 1700034I23 gene
mm9_v1_chr4_-_107973656_107973675	0.432584	CDX1,2,4.p2	AK162646|Zyg11b|414872|zyg-ll homolog B (C. elegans)	BC117977|Zyg11b|414872|zyg-ll homolog B (C. elegans)	BC117978|Zyg11b|414872|zyg-ll homolog B (C. elegans)	BC139383|Zyg11b|414872|zyg-ll homolog B (C. elegans)	BC139384|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK145130|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK166031|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK166174|Zyg11b|414872|zyg-ll homolog B (C. elegans)
mm9_v1_chr9_-_19976012_19976012	0.432491	CDX1,2,4.p2	NM_146904|Olfr870|57251|olfactory receptor 870
mm9_v1_chr6_+_124254668_124254724	0.431809	CDX1,2,4.p2	NM_001170395|Cd163|93671|CD163 antigen	NM_053094|Cd163|93671|CD163 antigen	AF274883|Cd163|93671|CD163 antigen	BC144848|Cd163|93671|CD163 antigen	BC145793|Cd163|93671|CD163 antigen	DQ058616|Cd163|93671|CD163 antigen	DQ058617|Cd163|93671|CD163 antigen
mm9_v1_chr8_+_72676676_72676679	0.431162	CDX1,2,4.p2	BC045147|Mef2b|17259|myocyte enhancer factor 2B	NM_001045484|Mef2b|17259|myocyte enhancer factor 2B	NM_008578|Mef2b|17259|myocyte enhancer factor 2B	D87833|Mef2b|17259|myocyte enhancer factor 2B	D87834|Mef2b|17259|myocyte enhancer factor 2B	D87835|Mef2b|17259|myocyte enhancer factor 2B	D87836|Mef2b|17259|myocyte enhancer factor 2B
mm9_v1_chr17_-_6654924_6655063	0.431051	CDX1,2,4.p2	EF110999|Dynlt1c|100040563|dynein light chain Tctex-type 1C	M25825|Dynlt1b|21648|dynein light chain Tctex-type 1D	AK005569|Dynlt1f|100040531|dynein light chain Tctex-type 1F	AK168478|Dynlt1c|100040563|dynein light chain Tctex-type 1C	NM_001166630|Dynlt1c|100040563|dynein light chain Tctex-type 1C	NM_001166627|Dynlt1f|100040531|dynein light chain Tctex-type 1F
mm9_v1_chr16_-_11220854_11220973	0.430751	CDX1,2,4.p2	AK218484|Gspt1|14852|G1 to S phase transition 1
mm9_v1_chr14_+_22569752_22569797	0.430748	CDX1,2,4.p2	AK006211|Samd8|67630|sterile alpha motif domain containing 8	NM_026283|Samd8|67630|sterile alpha motif domain containing 8	BC116745|Samd8|67630|sterile alpha motif domain containing 8	BC116747|Samd8|67630|sterile alpha motif domain containing 8	AK015593|Samd8|67630|sterile alpha motif domain containing 8	BC100476|Samd8|67630|sterile alpha motif domain containing 8
mm9_v1_chr18_-_67608747_67608862	0.429266	CDX1,2,4.p2	AK009650|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	AK149970|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	AK155403|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	BC021380|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	BC043056|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	NM_027130|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	AK151207|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	AK152115|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	AK152727|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	BC036999|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	AK164537|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	AK168668|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)
mm9_v1_chr11_-_114862859_114862945	0.429163	CDX1,2,4.p2	BC111820|AF251705|140497|cDNA sequence AF251705	AB098476|AF251705|140497|cDNA sequence AF251705	AY457050|AF251705|140497|cDNA sequence AF251705	AB091768|AF251705|140497|cDNA sequence AF251705	AK154808|AF251705|140497|cDNA sequence AF251705	AK050008|AF251705|140497|cDNA sequence AF251705	AK079395|AF251705|140497|cDNA sequence AF251705	AB091767|AF251705|140497|cDNA sequence AF251705	BC006801|AF251705|140497|cDNA sequence AF251705
mm9_v1_chr13_-_100114593_100114662	0.428922	CDX1,2,4.p2	BC016563|Ptcd2|68927|pentatricopeptide repeat domain 2	BC025110|Ptcd2|68927|pentatricopeptide repeat domain 2	NM_026873|Ptcd2|68927|pentatricopeptide repeat domain 2	AK004502|Ptcd2|68927|pentatricopeptide repeat domain 2	AK144396|Ptcd2|68927|pentatricopeptide repeat domain 2
mm9_v1_chr11_+_114529837_114529938	0.426748	CDX1,2,4.p2	AB037665|Rpl38|67671|ribosomal protein L38	NM_001048057|Rpl38|67671|ribosomal protein L38	NM_023372|Rpl38|67671|ribosomal protein L38	AK002659|Rpl38|67671|ribosomal protein L38	AK010518|Rpl38|67671|ribosomal protein L38	AK012391|Rpl38|67671|ribosomal protein L38	BC055346|Rpl38|67671|ribosomal protein L38	BC034339|Rpl38|67671|ribosomal protein L38	AK010277|Rpl38|67671|ribosomal protein L38	AK151517|Rpl38|67671|ribosomal protein L38	BC047046|Rpl38|67671|ribosomal protein L38
mm9_v1_chr2_+_78709363_78709419	0.426744	CDX1,2,4.p2	AK168072|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	AK048227|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	AK076011|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	X92664|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)
mm9_v1_chr6_-_82889694_82889743	0.426666	CDX1,2,4.p2	AB021291|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC057048|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC090625|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK047067|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC094567|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK035993|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK143196|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	NM_001113481|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	NM_011350|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm9_v1_chrX_-_160696001_160696124	0.426563	CDX1,2,4.p2	BC138104|Bmx|12169|BMX non-receptor tyrosine kinase	BC138105|Bmx|12169|BMX non-receptor tyrosine kinase	U88091|Bmx|12169|BMX non-receptor tyrosine kinase	AK080038|Bmx|12169|BMX non-receptor tyrosine kinase	AK040936|Bmx|12169|BMX non-receptor tyrosine kinase	NM_009759|Bmx|12169|BMX non-receptor tyrosine kinase
mm9_v1_chr9_+_38280332_38280333	0.424989	CDX1,2,4.p2	BC150476|Olfr905|258800|olfactory receptor 905	NM_146804|Olfr905|258800|olfactory receptor 905
mm9_v1_chr10_-_36855668_36856157	0.424775	CDX1,2,4.p2	AK151646|Marcks|17118|myristoylated alanine rich protein kinase C substrate	AK153217|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr17_-_33822327_33822413	0.423235	CDX1,2,4.p2	BC035525|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK159848|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	BC017539|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	BC065172|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK168347|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK133911|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK166670|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK169101|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK171892|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK145343|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK011521|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK051976|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK220299|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	NM_001109913|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	NM_029804|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M
mm9_v1_chr4_+_146125090_146125090	0.422753	CDX1,2,4.p2	BC108352|Zfp600|667666|zinc finger protein 600	NM_001177545|Zfp600|667666|zinc finger protein 600
mm9_v1_chr7_+_130267661_130267769	0.422532	CDX1,2,4.p2	AK147327|Tnrc6a|233833|trinucleotide repeat containing 6a	AK008599|Tnrc6a|233833|trinucleotide repeat containing 6a	BC026849|Tnrc6a|233833|trinucleotide repeat containing 6a	AK083848|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr11_+_67051530_67051557	0.422358	CDX1,2,4.p2	NM_010855|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066419|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ233297|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle
mm9_v1_chrX_+_146376197_146376197	0.421859	CDX1,2,4.p2	NM_001122735|Gm15091|382244|predicted gene 15091	NM_001198987|Gm15097|434869|predicted gene 15097
mm9_v1_chr11_-_121090513_121090656	0.421504	CDX1,2,4.p2	BC026616|BC017643|217370|cDNA sequence BC017643	AK158402|BC017643|217370|cDNA sequence BC017643	AK170767|BC017643|217370|cDNA sequence BC017643	BC017643|BC017643|217370|cDNA sequence BC017643	NM_144832|BC017643|217370|cDNA sequence BC017643	AK159453|BC017643|217370|cDNA sequence BC017643	AK168104|BC017643|217370|cDNA sequence BC017643	BC027406|BC017643|217370|cDNA sequence BC017643	AK145884|BC017643|217370|cDNA sequence BC017643
mm9_v1_chr19_-_60842585_60842735	0.42142	CDX1,2,4.p2	BC169258|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A
mm9_v1_chr12_+_73885063_73885417	0.421122	CDX1,2,4.p2	AK178989|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform	AK181077|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform
mm9_v1_chr6_+_64992810_64992853	0.420296	CDX1,2,4.p2	AK134442|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	AK011724|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	AK122454|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm9_v1_chr4_-_143802891_143802919	0.420234	CDX1,2,4.p2	BC094895|C87977|97187|expressed sequence C87977	AK139502|C87977|97187|expressed sequence C87977	NM_001177542|C87977|97187|expressed sequence C87977
mm9_v1_chr9_+_44446796_44446798	0.419337	CDX1,2,4.p2	AK156303|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chr5_-_73127743_73127840	0.418935	CDX1,2,4.p2	BC120552|Txk|22165|TXK tyrosine kinase	NM_013698|Txk|22165|TXK tyrosine kinase	BC137710|Txk|22165|TXK tyrosine kinase	D43963|Txk|22165|TXK tyrosine kinase
mm9_v1_chr2_-_28438389_28438521	0.418568	CDX1,2,4.p2	AK045419|Gtf3c5|70239|general transcription factor IIIC, polypeptide 5
mm9_v1_chr11_-_100749131_100749140	0.418284	CDX1,2,4.p2	AK004083|Stat3|20848|signal transducer and activator of transcription 3
mm9_v1_chr4_-_134108044_134108129	0.418175	CDX1,2,4.p2	NM_029100|Sepn1|74777|selenoprotein N, 1
mm9_v1_chr7_+_52877180_52877296	0.416769	CDX1,2,4.p2	AB195681|Izumo1|73456|izumo sperm-egg fusion 1	AK006830|Izumo1|73456|izumo sperm-egg fusion 1	NM_001018013|Izumo1|73456|izumo sperm-egg fusion 1	BC139270|Izumo1|73456|izumo sperm-egg fusion 1
mm9_v1_chr4_+_58298833_58298983	0.416765	CDX1,2,4.p2	NM_001037127|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037128|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037129|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037130|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001165996|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_010944|Musk|18198|muscle, skeletal, receptor tyrosine kinase	U37708|Musk|18198|muscle, skeletal, receptor tyrosine kinase	U37709|Musk|18198|muscle, skeletal, receptor tyrosine kinase	BC100342|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY360453|Musk|18198|muscle, skeletal, receptor tyrosine kinase	X86444|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955296|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955297|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955298|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY956403|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY956404|Musk|18198|muscle, skeletal, receptor tyrosine kinase
mm9_v1_chr17_-_47639222_47639245	0.415551	CDX1,2,4.p2	BC057895|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	BC023756|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AF222802|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK045108|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK049949|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK076486|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK086656|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK161658|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK162110|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	NM_022015|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq
mm9_v1_chr9_+_98197001_98197080	0.415283	CDX1,2,4.p2	BC005737|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	NM_144533|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK040783|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK041526|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK041897|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3
mm9_v1_chr11_+_101037415_101037470	0.415248	CDX1,2,4.p2	AF039833|Cntnap1|53321|contactin associated protein-like 1	NM_016782|Cntnap1|53321|contactin associated protein-like 1
mm9_v1_chr3_-_135271190_135271201	0.414285	CDX1,2,4.p2	AK089660|Nfkb1|18033|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105
mm9_v1_chr8_-_90886051_90886133	0.413923	CDX1,2,4.p2	AF084259|Brd7|26992|bromodomain containing 7	AK142758|Brd7|26992|bromodomain containing 7	NM_012047|Brd7|26992|bromodomain containing 7	AK138934|Brd7|26992|bromodomain containing 7
mm9_v1_chr17_+_5975585_5975739	0.413878	CDX1,2,4.p2	AK163512|Synj2|20975|synaptojanin 2	NM_001113351|Synj2|20975|synaptojanin 2	NM_011523|Synj2|20975|synaptojanin 2	AF041862|Synj2|20975|synaptojanin 2	BC060214|Synj2|20975|synaptojanin 2
mm9_v1_chr5_-_52541869_52541943	0.41357	CDX1,2,4.p2	AK208682|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15
mm9_v1_chr18_-_35899651_35899795	0.413204	CDX1,2,4.p2	AK172314|Tmem173|72512|transmembrane protein 173
mm9_v1_chr7_-_20506379_20506493	0.411941	CDX1,2,4.p2	AJ563420|Pvr|52118|poliovirus receptor	BC138219|Pvr|52118|poliovirus receptor	BC138220|Pvr|52118|poliovirus receptor	BC032283|Pvr|52118|poliovirus receptor	AB195430|Pvr|52118|poliovirus receptor	BC013673|Pvr|52118|poliovirus receptor	AK078344|Pvr|52118|poliovirus receptor	AK014446|Pvr|52118|poliovirus receptor	AK038747|Pvr|52118|poliovirus receptor	AK080753|Pvr|52118|poliovirus receptor	AK165873|Pvr|52118|poliovirus receptor	NM_027514|Pvr|52118|poliovirus receptor
mm9_v1_chr5_+_136455974_136455989	0.411749	CDX1,2,4.p2	BC100745|Zp3|22788|zona pellucida glycoprotein 3	BC103583|Zp3|22788|zona pellucida glycoprotein 3	BC103584|Zp3|22788|zona pellucida glycoprotein 3	BC103585|Zp3|22788|zona pellucida glycoprotein 3	M20026|Zp3|22788|zona pellucida glycoprotein 3	NM_011776|Zp3|22788|zona pellucida glycoprotein 3	AK131934|Zp3|22788|zona pellucida glycoprotein 3	BC099465|Zp3|22788|zona pellucida glycoprotein 3
mm9_v1_chr19_+_58586482_58586511	0.411722	CDX1,2,4.p2	AK005864|1700011F14Rik|75645|RIKEN cDNA 1700011F14 gene	NM_029372|1700011F14Rik|75645|RIKEN cDNA 1700011F14 gene	BC049707|1700011F14Rik|75645|RIKEN cDNA 1700011F14 gene
mm9_v1_chr1_-_64167574_64167617	0.411405	CDX1,2,4.p2	AB221646|Klf7|93691|Kruppel-like factor 7 (ubiquitous)
mm9_v1_chr4_+_101180625_101180708	0.411229	CDX1,2,4.p2	AK147570|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	AK147637|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6
mm9_v1_chr8_-_3854285_3854307	0.41069	CDX1,2,4.p2	AF373412|Cd209e|170780|CD209e antigen	BC107188|Cd209e|170780|CD209e antigen	BC107189|Cd209e|170780|CD209e antigen	NM_130905|Cd209e|170780|CD209e antigen	AK040917|Cd209e|170780|CD209e antigen
mm9_v1_chr4_+_134479542_134479573	0.408427	CDX1,2,4.p2	BC002142|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	BC045256|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	BC051556|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	BC032060|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	BC043057|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AB041555|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AK150665|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AK152736|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	BC054728|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed
mm9_v1_chr4_-_43849385_43849388	0.408341	CDX1,2,4.p2	BC137911|Olfr157|100040268|olfactory receptor 157	BC137912|Olfr157|100040268|olfactory receptor 157	NM_019475|Olfr157|100040268|olfactory receptor 157
mm9_v1_chr1_-_84741605_84741713	0.408259	CDX1,2,4.p2	BC004085|Trip12|14897|thyroid hormone receptor interactor 12
mm9_v1_chr1_-_13579802_13579867	0.407623	CDX1,2,4.p2	CT010238|Tram1|72265|translocating chain-associating membrane protein 1	AY029764|Tram1|72265|translocating chain-associating membrane protein 1	AK164347|Tram1|72265|translocating chain-associating membrane protein 1
mm9_v1_chr7_+_150190950_150190964	0.407377	CDX1,2,4.p2	AY039000|Tspan32|27027|tetraspanin 32	NM_001128080|Tspan32|27027|tetraspanin 32	AK041748|Tspan32|27027|tetraspanin 32
mm9_v1_chr3_+_63780020_63780051	0.407039	CDX1,2,4.p2	AK146654|Gmps|229363|guanine monophosphate synthetase
mm9_v1_chr4_-_11892848_11892892	0.406642	CDX1,2,4.p2	BC048372|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1	NM_001098231|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1
mm9_v1_chr1_+_152239957_152239972	0.406059	CDX1,2,4.p2	AK076012|Tpr|108989|translocated promoter region	NM_133780|Tpr|108989|translocated promoter region
mm9_v1_chr1_+_16678513_16678526	0.405736	CDX1,2,4.p2	AK019283|Ly96|17087|lymphocyte antigen 96
mm9_v1_chr8_-_3926756_3926840	0.40441	CDX1,2,4.p2	AK007656|Cd209b|69165|CD209b antigen	AF374471|Cd209b|69165|CD209b antigen	NM_001037800|Cd209b|69165|CD209b antigen	AF424796|Cd209b|69165|CD209b antigen	AF424790|Cd209b|69165|CD209b antigen	AF424791|Cd209b|69165|CD209b antigen	AF424792|Cd209b|69165|CD209b antigen	AF424793|Cd209b|69165|CD209b antigen	AF424797|Cd209b|69165|CD209b antigen	AF424799|Cd209b|69165|CD209b antigen	AF422108|Cd209b|69165|CD209b antigen	AK138999|Cd209b|69165|CD209b antigen	NM_026972|Cd209b|69165|CD209b antigen	AF373409|Cd209b|69165|CD209b antigen	AF424795|Cd209b|69165|CD209b antigen	AF424794|Cd209b|69165|CD209b antigen	AF424798|Cd209b|69165|CD209b antigen	AF424803|Cd209b|69165|CD209b antigen
mm9_v1_chr17_-_56724005_56724033	0.403862	CDX1,2,4.p2	NM_001029979|Safb2|224902|scaffold attachment factor B2
mm9_v1_chr2_+_34631124_34631274	0.403326	CDX1,2,4.p2	M30779|Hspa5|14828|heat shock protein 5	M19351|Hspa5|14828|heat shock protein 5	AK198632|Hspa5|14828|heat shock protein 5	AK215158|Hspa5|14828|heat shock protein 5
mm9_v1_chr7_+_3303657_3303670	0.40331	CDX1,2,4.p2	AK144419|Prkcc|18752|protein kinase C, gamma	NM_011102|Prkcc|18752|protein kinase C, gamma
mm9_v1_chr14_+_122419329_122419373	0.402471	CDX1,2,4.p2	AK004517|Ubac2|68889|ubiquitin associated domain containing 2
mm9_v1_chr19_+_58803376_58803466	0.402119	CDX1,2,4.p2	AF061274|Pnliprp1|18946|pancreatic lipase related protein 1	NM_018874|Pnliprp1|18946|pancreatic lipase related protein 1	AK028105|Pnliprp1|18946|pancreatic lipase related protein 1	BC090985|Pnliprp1|18946|pancreatic lipase related protein 1
mm9_v1_chr17_+_8503966_8504073	0.401799	CDX1,2,4.p2	BC091770|Sft2d1|106489|SFT2 domain containing 1	NM_134114|Sft2d1|106489|SFT2 domain containing 1	BC006777|Sft2d1|106489|SFT2 domain containing 1	AK171776|Sft2d1|106489|SFT2 domain containing 1	AK151338|Sft2d1|106489|SFT2 domain containing 1	BC130232|Sft2d1|106489|SFT2 domain containing 1	AK017471|Sft2d1|106489|SFT2 domain containing 1
mm9_v1_chr4_+_134479504_134479540	0.400843	CDX1,2,4.p2	AK028145|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AK003799|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AK012363|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AK150024|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AK160993|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AK169598|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AK169760|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	NM_023665|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AK029529|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed
mm9_v1_chr19_+_5601857_5601905	0.400548	CDX1,2,4.p2	NM_026616|Rnaseh2c|68209|ribonuclease H2, subunit C	AF346604|Rnaseh2c|68209|ribonuclease H2, subunit C	AK018776|Rnaseh2c|68209|ribonuclease H2, subunit C	AK011556|Rnaseh2c|68209|ribonuclease H2, subunit C	BC024333|Rnaseh2c|68209|ribonuclease H2, subunit C
mm9_v1_chr16_+_33298953_33298979	0.400493	CDX1,2,4.p2	AK198971|Snx4|69150|sorting nexin 4
mm9_v1_chr8_+_24145593_24145599	0.400224	CDX1,2,4.p2	M84756|Ank1|11733|ankyrin 1, erythroid	BC079910|Ank1|11733|ankyrin 1, erythroid
mm9_v1_chr14_-_55400722_55400814	0.398323	CDX1,2,4.p2	BC059004|Slc7a8|50934|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	NM_016972|Slc7a8|50934|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	AK044620|Slc7a8|50934|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8
mm9_v1_chr10_-_53349752_53349783	0.397797	CDX1,2,4.p2	AK139112|Mcm9|71567|minichromosome maintenance complex component 9	AK046636|Mcm9|71567|minichromosome maintenance complex component 9
mm9_v1_chr7_-_117987922_117987942	0.397742	CDX1,2,4.p2	AK006791|Rnf141|67150|ring finger protein 141
mm9_v1_chr17_-_40931024_40931046	0.397704	CDX1,2,4.p2	AK018856|Crisp2|22024|cysteine-rich secretory protein 2	M25533|Crisp2|22024|cysteine-rich secretory protein 2	NM_009420|Crisp2|22024|cysteine-rich secretory protein 2	BC049615|Crisp2|22024|cysteine-rich secretory protein 2
mm9_v1_chr6_-_115626589_115626679	0.397644	CDX1,2,4.p2	AK141745|Raf1|110157|v-raf-leukemia viral oncogene 1	NM_029780|Raf1|110157|v-raf-leukemia viral oncogene 1
mm9_v1_chr13_+_113450958_113450993	0.39697	CDX1,2,4.p2	AK020109|Slc38a9|268706|solute carrier family 38, member 9	BC052361|Slc38a9|268706|solute carrier family 38, member 9	NM_178746|Slc38a9|268706|solute carrier family 38, member 9	AK044735|Slc38a9|268706|solute carrier family 38, member 9	AK043402|Slc38a9|268706|solute carrier family 38, member 9	AK034958|Slc38a9|268706|solute carrier family 38, member 9	AK039821|Slc38a9|268706|solute carrier family 38, member 9
mm9_v1_chr6_-_129976943_129976977	0.396012	CDX1,2,4.p2	BC116377|Klra6|16637|killer cell lectin-like receptor, subfamily A, member 6	BC116822|Klra19|93971|killer cell lectin-like receptor, subfamily A, member 19	BC116824|Klra19|93971|killer cell lectin-like receptor, subfamily A, member 19	NM_008464|Klra6|16637|killer cell lectin-like receptor, subfamily A, member 6	U10092|Klra6|16637|killer cell lectin-like receptor, subfamily A, member 6	AF288378|Klra19|93971|killer cell lectin-like receptor, subfamily A, member 19	NM_053154|Klra19|93971|killer cell lectin-like receptor, subfamily A, member 19
mm9_v1_chr3_+_82859422_82859482	0.395442	CDX1,2,4.p2	AK080068|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	AK077197|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	NM_016784|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	AK075993|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	AK076007|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)
mm9_v1_chr10_+_59165307_59165416	0.394635	CDX1,2,4.p2	AK083520|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK049521|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK050113|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK046049|Cbara1|216001|calcium binding atopy-related autoantigen 1	BC026566|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK077605|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK029884|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK052485|Cbara1|216001|calcium binding atopy-related autoantigen 1	BC018320|Cbara1|216001|calcium binding atopy-related autoantigen 1	BC023022|Cbara1|216001|calcium binding atopy-related autoantigen 1	NM_144822|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK085553|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK051470|Cbara1|216001|calcium binding atopy-related autoantigen 1
mm9_v1_chr1_+_37426061_37426065	0.394554	CDX1,2,4.p2	AK035867|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC120541|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC144747|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC144748|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	NM_172971|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I
mm9_v1_chr11_-_99471502_99471502	0.39426	CDX1,2,4.p2	NM_001099346|Gm11937|100041488|predicted gene 11937
mm9_v1_chr7_+_50890076_50890108	0.392342	CDX1,2,4.p2	AK008389|Ceacam18|72431|carcinoembryonic antigen-related cell adhesion molecule 18	BC042780|Ceacam18|72431|carcinoembryonic antigen-related cell adhesion molecule 18	NM_028236|Ceacam18|72431|carcinoembryonic antigen-related cell adhesion molecule 18
mm9_v1_chr18_+_63137550_63137559	0.392168	CDX1,2,4.p2	AK154573|Napg|108123|N-ethylmaleimide sensitive fusion protein attachment protein gamma
mm9_v1_chr5_+_120566489_120566582	0.392045	CDX1,2,4.p2	AK146493|Rbm19|74111|RNA binding motif protein 19	AK053511|Rbm19|74111|RNA binding motif protein 19	BC025619|Rbm19|74111|RNA binding motif protein 19	NM_028762|Rbm19|74111|RNA binding motif protein 19	AK167100|Rbm19|74111|RNA binding motif protein 19	BC034010|Rbm19|74111|RNA binding motif protein 19
mm9_v1_chr6_+_97941776_97941914	0.39012	CDX1,2,4.p2	NM_008601|Mitf|17342|microphthalmia-associated transcription factor	U19875|Mitf|17342|microphthalmia-associated transcription factor	Z23066|Mitf|17342|microphthalmia-associated transcription factor	BC108976|Mitf|17342|microphthalmia-associated transcription factor	BC108977|Mitf|17342|microphthalmia-associated transcription factor	AB221657|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr5_+_115729684_115729726	0.389904	CDX1,2,4.p2	AK014348|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK045993|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK050334|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	BC052345|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK007496|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	NM_026504|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK009825|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)
mm9_v1_chr5_+_119214502_119214629	0.389757	CDX1,2,4.p2	AK018557|Med13l|76199|mediator complex subunit 13-like
mm9_v1_chr9_-_65270579_65270761	0.389664	CDX1,2,4.p2	AY279396|Ostb|330962|organic solute transporter beta	NM_178933|Ostb|330962|organic solute transporter beta	AK002463|Ostb|330962|organic solute transporter beta	AK004188|Ostb|330962|organic solute transporter beta
mm9_v1_chr17_-_35810624_35810662	0.387531	CDX1,2,4.p2	AF054823|Gtf2h4|14885|general transcription factor II H, polypeptide 4	NM_010364|Gtf2h4|14885|general transcription factor II H, polypeptide 4	BC055889|Gtf2h4|14885|general transcription factor II H, polypeptide 4	AK079456|Gtf2h4|14885|general transcription factor II H, polypeptide 4	AK088296|Gtf2h4|14885|general transcription factor II H, polypeptide 4	AK144680|Gtf2h4|14885|general transcription factor II H, polypeptide 4	AK146112|Gtf2h4|14885|general transcription factor II H, polypeptide 4	AK149320|Gtf2h4|14885|general transcription factor II H, polypeptide 4
mm9_v1_chr11_+_93905443_93905464	0.385116	CDX1,2,4.p2	AK147537|Spag9|70834|sperm associated antigen 9	AK147431|Spag9|70834|sperm associated antigen 9
mm9_v1_chr17_+_26813327_26813409	0.384554	CDX1,2,4.p2	AK017760|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	NM_025272|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK159669|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK134836|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK007610|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK008464|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK168015|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	BC024733|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK013229|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK030335|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E
mm9_v1_chr12_+_114782118_114782165	0.384427	CDX1,2,4.p2	AY158689|Adam6a|238406|a disintegrin and metallopeptidase domain 6A	NM_174885|Adam6a|238406|a disintegrin and metallopeptidase domain 6A	BC139059|Adam6a|238406|a disintegrin and metallopeptidase domain 6A	BC108387|Adam6a|238406|a disintegrin and metallopeptidase domain 6A
mm9_v1_chr9_-_37519864_37519864	0.384015	CDX1,2,4.p2	BC130240|Olfr160|80706|olfactory receptor 160	NM_030553|Olfr160|80706|olfactory receptor 160
mm9_v1_chr1_-_172145521_172145534	0.383715	CDX1,2,4.p2	BC058732|Uhmk1|16589|U2AF homology motif (UHM) kinase 1	NM_010633|Uhmk1|16589|U2AF homology motif (UHM) kinase 1	AK013347|Uhmk1|16589|U2AF homology motif (UHM) kinase 1
mm9_v1_chr9_-_70504934_70505009	0.382581	CDX1,2,4.p2	BC058683|Fam63b|235461|family with sequence similarity 63, member B	AK046623|Fam63b|235461|family with sequence similarity 63, member B	BC049357|Fam63b|235461|family with sequence similarity 63, member B	AK046403|Fam63b|235461|family with sequence similarity 63, member B	AK035930|Fam63b|235461|family with sequence similarity 63, member B	NM_172772|Fam63b|235461|family with sequence similarity 63, member B	AK220158|Fam63b|235461|family with sequence similarity 63, member B
mm9_v1_chr18_+_63137563_63137565	0.381803	CDX1,2,4.p2	AK167372|Napg|108123|N-ethylmaleimide sensitive fusion protein attachment protein gamma
mm9_v1_chr18_+_64425037_64425080	0.381518	CDX1,2,4.p2	AK134678|St8sia3|20451|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	BC075645|St8sia3|20451|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	AK133780|St8sia3|20451|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	X80502|St8sia3|20451|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
mm9_v1_chr11_+_3863948_3864033	0.381258	CDX1,2,4.p2	AK029075|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	NM_022889|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	BC004844|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	BC011142|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	AK088831|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	AF289539|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	AK220142|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)
mm9_v1_chr2_-_4573118_4573191	0.380918	CDX1,2,4.p2	AK139720|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC058631|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC004573|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC028306|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	NM_026045|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK135890|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK035073|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK135707|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)
mm9_v1_chr5_-_87911282_87911282	0.380654	CDX1,2,4.p2	BC048920|Ugt2a2|552899|UDP glucuronosyltransferase 2 family, polypeptide A2	BC058786|Ugt2a2|552899|UDP glucuronosyltransferase 2 family, polypeptide A2	NM_001024148|Ugt2a2|552899|UDP glucuronosyltransferase 2 family, polypeptide A2
mm9_v1_chr9_+_45715013_45715102	0.380265	CDX1,2,4.p2	AK165389|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	AK151980|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	AK148416|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	BC007322|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	U48830|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7
mm9_v1_chr17_+_86577946_86578063	0.379823	CDX1,2,4.p2	
mm9_v1_chr7_+_135110992_135111067	0.379085	CDX1,2,4.p2	NM_139149|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK132141|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK134491|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK146198|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK149118|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK145582|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK032815|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK038226|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK139960|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK172554|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	BC058247|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	BC011078|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	BC040827|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AF224264|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)
mm9_v1_chr1_-_174188554_174188554	0.378256	CDX1,2,4.p2	NM_013734|Atp1a4|27222|ATPase, Na+/K+ transporting, alpha 4 polypeptide
mm9_v1_chr7_-_11751496_11751496	0.3781	CDX1,2,4.p2	EF143406|Zscan4d|545913|zinc finger and SCAN domain containing 4D	NM_001100186|Zscan4d|545913|zinc finger and SCAN domain containing 4D
mm9_v1_chr8_-_3720642_3720662	0.377792	CDX1,2,4.p2	BC025069|Clec4g|75863|C-type lectin domain family 4, member g	AK079992|Clec4g|75863|C-type lectin domain family 4, member g	BC087963|Clec4g|75863|C-type lectin domain family 4, member g	NM_029465|Clec4g|75863|C-type lectin domain family 4, member g
mm9_v1_chr12_+_35669432_35669444	0.377741	CDX1,2,4.p2	AK077203|Prps1l1|75456|phosphoribosyl pyrophosphate synthetase 1-like 1	NM_029294|Prps1l1|75456|phosphoribosyl pyrophosphate synthetase 1-like 1	BC109355|Prps1l1|75456|phosphoribosyl pyrophosphate synthetase 1-like 1
mm9_v1_chrX_-_5897723_5897841	0.37757	CDX1,2,4.p2	AF082348|Bmp15|12155|bone morphogenetic protein 15	AK135757|Bmp15|12155|bone morphogenetic protein 15	AK139936|Bmp15|12155|bone morphogenetic protein 15	BC055363|Bmp15|12155|bone morphogenetic protein 15	AK139773|Bmp15|12155|bone morphogenetic protein 15	AK139847|Bmp15|12155|bone morphogenetic protein 15	NM_009757|Bmp15|12155|bone morphogenetic protein 15	AK135882|Bmp15|12155|bone morphogenetic protein 15
mm9_v1_chr3_+_136333793_136333805	0.377313	CDX1,2,4.p2	BC096652|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr8_+_93593971_93593997	0.374959	CDX1,2,4.p2	AK155256|Rbl2|19651|retinoblastoma-like 2	NM_011250|Rbl2|19651|retinoblastoma-like 2	AK142172|Rbl2|19651|retinoblastoma-like 2
mm9_v1_chr6_+_57183432_57183432	0.373845	CDX1,2,4.p2	NM_053237|Vmn1r14|113864|vomeronasal 1 receptor 14
mm9_v1_chr1_+_52687548_52687638	0.372788	CDX1,2,4.p2	NM_001142647|Tmem194b|227094|transmembrane protein 194B	AK030361|Tmem194b|227094|transmembrane protein 194B	AK036693|Tmem194b|227094|transmembrane protein 194B	AK048484|Tmem194b|227094|transmembrane protein 194B	AK170577|Tmem194b|227094|transmembrane protein 194B	AK086801|Tmem194b|227094|transmembrane protein 194B
mm9_v1_chr11_+_29426408_29426413	0.372026	CDX1,2,4.p2	
mm9_v1_chrX_+_131135770_131135834	0.371256	CDX1,2,4.p2	AK141861|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	AK164115|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	AK168116|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	BC005461|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	AK169104|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	AK077716|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	NM_019868|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2
mm9_v1_chr8_-_72438496_72438584	0.371009	CDX1,2,4.p2	BC019178|Gatad2a|234366|GATA zinc finger domain containing 2A	AK189334|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr3_+_84668066_84668066	0.370188	CDX1,2,4.p2	BC066093|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177774|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr5_-_71233855_71233855	0.369816	CDX1,2,4.p2	AK034332|Gabrg1|14405|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	NM_010252|Gabrg1|14405|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1
mm9_v1_chr16_+_87354429_87354497	0.369211	CDX1,2,4.p2	AY456393|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	NM_001159331|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	NM_026366|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC116393|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC116394|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK160298|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK145617|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC098330|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK012019|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AY536887|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)
mm9_v1_chr14_+_61757271_61757327	0.368913	CDX1,2,4.p2	AK160797|Sacs|50720|sacsin	NM_172809|Sacs|50720|sacsin	AK046501|Sacs|50720|sacsin
mm9_v1_chr13_-_14615371_14615494	0.368852	CDX1,2,4.p2	AK051569|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK084246|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK086170|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK047678|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	NM_001081348|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK053694|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
mm9_v1_chr7_-_117987867_117987920	0.368795	CDX1,2,4.p2	BC096563|Rnf141|67150|ring finger protein 141	AK011839|Rnf141|67150|ring finger protein 141	BC018553|Rnf141|67150|ring finger protein 141	AK015505|Rnf141|67150|ring finger protein 141	NM_025999|Rnf141|67150|ring finger protein 141	AF353167|Rnf141|67150|ring finger protein 141	AK154417|Rnf141|67150|ring finger protein 141
mm9_v1_chr15_-_83425479_83425610	0.368741	CDX1,2,4.p2	AM690756|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	BC055368|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	AK084879|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	AK134345|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	AK150116|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	AK143496|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	NM_183017|Ttll12|223723|tubulin tyrosine ligase-like family, member 12
mm9_v1_chr9_+_107483603_107483637	0.368488	CDX1,2,4.p2	BC018457|Hyal3|109685|hyaluronoglucosaminidase 3	NM_178020|Hyal3|109685|hyaluronoglucosaminidase 3	AY048681|Hyal3|109685|hyaluronoglucosaminidase 3
mm9_v1_chr15_-_63743844_63743851	0.36826	CDX1,2,4.p2	BC113153|Gsdmc2|331063|gasdermin C2	AK018537|Gsdmc4|74548|gasdermin C4	AK163061|Gsdmc4|74548|gasdermin C4	NM_028992|Gsdmc4|74548|gasdermin C4
mm9_v1_chr13_-_113442508_113442517	0.364205	CDX1,2,4.p2	AK014844|Ddx4|13206|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	AK133366|Ddx4|13206|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	NM_001145885|Ddx4|13206|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	NM_010029|Ddx4|13206|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
mm9_v1_chr8_+_73053432_73053453	0.363951	CDX1,2,4.p2	AB154247|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr13_+_5860701_5860744	0.363794	CDX1,2,4.p2	NM_011803|Klf6|23849|Kruppel-like factor 6	AY027436|Klf6|23849|Kruppel-like factor 6
mm9_v1_chr4_-_138908210_138908289	0.363744	CDX1,2,4.p2	AK011387|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	BC005734|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	NM_023536|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	AK171445|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	BC096556|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	BC138221|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	BC145205|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	BC145209|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)
mm9_v1_chr6_-_106698941_106699030	0.363675	CDX1,2,4.p2	AK138923|Il5ra|16192|interleukin 5 receptor, alpha	D90205|Il5ra|16192|interleukin 5 receptor, alpha	NM_008370|Il5ra|16192|interleukin 5 receptor, alpha
mm9_v1_chr2_+_11700153_11700227	0.362829	CDX1,2,4.p2	AK140039|Ankrd16|320816|ankyrin repeat domain 16	BC037442|Ankrd16|320816|ankyrin repeat domain 16	BC021802|Ankrd16|320816|ankyrin repeat domain 16	AK085853|Ankrd16|320816|ankyrin repeat domain 16	AK052460|Ankrd16|320816|ankyrin repeat domain 16	BC116230|Ankrd16|320816|ankyrin repeat domain 16	BC116229|Ankrd16|320816|ankyrin repeat domain 16
mm9_v1_chr7_-_20250303_20250406	0.362661	CDX1,2,4.p2	AK218417|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	BC022172|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	AK148080|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	D67067|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	AK152410|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	AK152809|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	AK171901|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	AK165742|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	NM_019649|Clptm1|56457|cleft lip and palate associated transmembrane protein 1
mm9_v1_chr4_+_24900565_24900565	0.36136	CDX1,2,4.p2	AK036257|Gpr63|81006|G protein-coupled receptor 63	NM_030733|Gpr63|81006|G protein-coupled receptor 63
mm9_v1_chr2_-_120389559_120389604	0.36111	CDX1,2,4.p2	AK147887|Zfp106|20402|zinc finger protein 106	AK089359|Zfp106|20402|zinc finger protein 106	AK155019|Zfp106|20402|zinc finger protein 106	NM_011743|Zfp106|20402|zinc finger protein 106
mm9_v1_chr17_+_66472859_66472952	0.361	CDX1,2,4.p2	BC079656|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	NM_001003919|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK076357|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK049419|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK152868|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)
mm9_v1_chr19_-_29078349_29078367	0.360029	CDX1,2,4.p2	NM_001178039|Gm10136|672214|predicted pseudogene 10136
mm9_v1_chr8_+_96738448_96738479	0.359815	CDX1,2,4.p2	AK169693|Nup93|71805|nucleoporin 93
mm9_v1_chr3_+_108060061_108060131	0.358592	CDX1,2,4.p2	AK160741|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	AK160530|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	AK160550|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	AK161680|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	BC007181|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	BC010709|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	BC083342|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	BC108368|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	AF019661|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5
mm9_v1_chr2_+_70400179_70400352	0.358455	CDX1,2,4.p2	AK054554|Gad1|14415|glutamic acid decarboxylase 1	NM_008077|Gad1|14415|glutamic acid decarboxylase 1	AK148497|Gad1|14415|glutamic acid decarboxylase 1	AK160868|Gad1|14415|glutamic acid decarboxylase 1	AK136801|Gad1|14415|glutamic acid decarboxylase 1	BC027059|Gad1|14415|glutamic acid decarboxylase 1	AF326547|Gad1|14415|glutamic acid decarboxylase 1	AF326548|Gad1|14415|glutamic acid decarboxylase 1	Z49976|Gad1|14415|glutamic acid decarboxylase 1
mm9_v1_chr3_+_135128934_135128963	0.357816	CDX1,2,4.p2	AK206793|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
mm9_v1_chr7_-_31435128_31435246	0.357802	CDX1,2,4.p2	AK151000|Rbm42|68035|RNA binding motif protein 42	BC011286|Rbm42|68035|RNA binding motif protein 42	BC027372|Rbm42|68035|RNA binding motif protein 42	BC057928|Rbm42|68035|RNA binding motif protein 42	BC039917|Rbm42|68035|RNA binding motif protein 42	AK013929|Rbm42|68035|RNA binding motif protein 42	BC009148|Rbm42|68035|RNA binding motif protein 42	NM_133693|Rbm42|68035|RNA binding motif protein 42
mm9_v1_chr4_-_88322758_88322759	0.357653	CDX1,2,4.p2	BC114392|Gm13280|230398|predicted gene 13280	NM_206867|Gm13280|230398|predicted gene 13280
mm9_v1_chrX_-_35988178_35988234	0.357375	CDX1,2,4.p2	AB030184|C1galt1c1|59048|C1GALT1-specific chaperone 1	AY159320|C1galt1c1|59048|C1GALT1-specific chaperone 1
mm9_v1_chr2_+_122141407_122141407	0.357252	CDX1,2,4.p2	NM_001099297|Duox1|99439|dual oxidase 1
mm9_v1_chr6_+_143156520_143156614	0.356914	CDX1,2,4.p2	AK004338|Etnk1|75320|ethanolamine kinase 1
mm9_v1_chr9_-_96371668_96371747	0.35686	CDX1,2,4.p2	AK208401|Rnf7|19823|ring finger protein 7
mm9_v1_chr6_+_38553293_38553312	0.356204	CDX1,2,4.p2	AK138070|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)
mm9_v1_chr18_+_44429780_44429922	0.356025	CDX1,2,4.p2	AK030279|Npy6r|18169|neuropeptide Y receptor Y6	NM_010935|Npy6r|18169|neuropeptide Y receptor Y6	BC103620|Npy6r|18169|neuropeptide Y receptor Y6	BC103621|Npy6r|18169|neuropeptide Y receptor Y6	BC103622|Npy6r|18169|neuropeptide Y receptor Y6	BC103667|Npy6r|18169|neuropeptide Y receptor Y6
mm9_v1_chr6_+_47827641_47827690	0.355778	CDX1,2,4.p2	AK030516|Zfp282|101095|zinc finger protein 282	AK081854|Zfp282|101095|zinc finger protein 282	BC025581|Zfp282|101095|zinc finger protein 282
mm9_v1_chr12_-_82586058_82586128	0.355666	CDX1,2,4.p2	AK008486|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	BC005675|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK007450|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK007562|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK040003|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK082374|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK087666|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK088794|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	NM_025461|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)
mm9_v1_chr2_-_65405546_65405588	0.35348	CDX1,2,4.p2	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr16_-_48994021_48994056	0.353019	CDX1,2,4.p2	BC052893|Dzip3|224170|DAZ interacting protein 3, zinc finger	BC117953|Dzip3|224170|DAZ interacting protein 3, zinc finger	BC117954|Dzip3|224170|DAZ interacting protein 3, zinc finger
mm9_v1_chr7_+_127347474_127347546	0.352729	CDX1,2,4.p2	AK029665|Abca14|67928|ATP-binding cassette, sub-family A (ABC1), member 14	AY243470|Abca14|67928|ATP-binding cassette, sub-family A (ABC1), member 14	NM_026458|Abca14|67928|ATP-binding cassette, sub-family A (ABC1), member 14	AK007156|Abca14|67928|ATP-binding cassette, sub-family A (ABC1), member 14	AK015996|Abca14|67928|ATP-binding cassette, sub-family A (ABC1), member 14	AK016294|Abca14|67928|ATP-binding cassette, sub-family A (ABC1), member 14	BC116805|Abca14|67928|ATP-binding cassette, sub-family A (ABC1), member 14	BC116809|Abca14|67928|ATP-binding cassette, sub-family A (ABC1), member 14
mm9_v1_chr14_-_58284047_58284093	0.35259	CDX1,2,4.p2	AK163516|Xpo4|57258|exportin 4
mm9_v1_chr11_-_94693315_94693315	0.351243	CDX1,2,4.p2	NM_001163172|Tmem92-ps|544806|transmembrane protein 92, pseudogene
mm9_v1_chr6_+_56935288_56935335	0.351227	CDX1,2,4.p2	BC138068|Vmn1r5|171192|vomeronasal 1 receptor 5	BC138069|Vmn1r5|171192|vomeronasal 1 receptor 5	NM_134174|Vmn1r5|171192|vomeronasal 1 receptor 5
mm9_v1_chr7_+_134072351_134072419	0.35088	CDX1,2,4.p2	AK075722|Kctd13|233877|potassium channel tetramerisation domain containing 13	NM_172747|Kctd13|233877|potassium channel tetramerisation domain containing 13	BC079607|Kctd13|233877|potassium channel tetramerisation domain containing 13	AF534881|Kctd13|233877|potassium channel tetramerisation domain containing 13
mm9_v1_chr15_+_78757171_78757220	0.350595	CDX1,2,4.p2	BC002063|Lgals1|16852|lectin, galactose binding, soluble 1	X51903|Lgals1|16852|lectin, galactose binding, soluble 1	X15986|Lgals1|16852|lectin, galactose binding, soluble 1	X53067|Lgals1|16852|lectin, galactose binding, soluble 1	BC099479|Lgals1|16852|lectin, galactose binding, soluble 1	M57470|Lgals1|16852|lectin, galactose binding, soluble 1	M33214|Lgals1|16852|lectin, galactose binding, soluble 1
mm9_v1_chr4_-_144311306_144311306	0.34998	CDX1,2,4.p2	NM_001085536|Gm13178|546849|predicted gene 13178
mm9_v1_chr7_+_24443334_24443439	0.349862	CDX1,2,4.p2	AF324873|Vmn1r172|81010|vomeronasal 1 receptor 172	NM_030735|Vmn1r172|81010|vomeronasal 1 receptor 172	BC139316|Vmn1r172|81010|vomeronasal 1 receptor 172	BC139317|Vmn1r172|81010|vomeronasal 1 receptor 172	BC145601|Vmn1r172|81010|vomeronasal 1 receptor 172
mm9_v1_chr11_-_101323802_101323881	0.349804	CDX1,2,4.p2	BC024586|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK181513|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK183725|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK199516|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)
mm9_v1_chrX_-_35022192_35022192	0.349119	CDX1,2,4.p2	AJ972670|Rhox4f|636177|reproductive homeobox 4F	NM_001039696|Rhox4f|636177|reproductive homeobox 4F
mm9_v1_chr14_-_52924739_52924784	0.349097	CDX1,2,4.p2	AK089158|Mettl3|56335|methyltransferase like 3	AF135789|Mettl3|56335|methyltransferase like 3	BC012526|Mettl3|56335|methyltransferase like 3	AK085189|Mettl3|56335|methyltransferase like 3	AK151616|Mettl3|56335|methyltransferase like 3	AK153113|Mettl3|56335|methyltransferase like 3
mm9_v1_chrX_-_35065833_35065833	0.34885	CDX1,2,4.p2	AJ972671|Rhox4g|664608|reproductive homeobox 4G	NM_001039698|Rhox4g|664608|reproductive homeobox 4G
mm9_v1_chr18_+_63137566_63137569	0.34869	CDX1,2,4.p2	BC026977|Napg|108123|N-ethylmaleimide sensitive fusion protein attachment protein gamma	NM_028017|Napg|108123|N-ethylmaleimide sensitive fusion protein attachment protein gamma
mm9_v1_chr17_+_21703971_21704009	0.348275	CDX1,2,4.p2	AK164108|Zfp948|381066|zinc finger protein 948	BC049807|Zfp948|381066|zinc finger protein 948	BC076634|Zfp948|381066|zinc finger protein 948	NM_001002008|Zfp948|381066|zinc finger protein 948
mm9_v1_chr5_+_24687277_24687437	0.345758	CDX1,2,4.p2	AK005605|Galntl5|67909|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	AK016415|Galntl5|67909|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	NM_026449|Galntl5|67909|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	BC049554|Galntl5|67909|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	AK006193|Galntl5|67909|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	BC100447|Galntl5|67909|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	BC145757|Galntl5|67909|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5
mm9_v1_chr11_-_101087738_101087767	0.344865	CDX1,2,4.p2	AK045374|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	AK138942|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	U60453|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	AK164192|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	AK140694|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	NM_007970|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)
mm9_v1_chr3_-_146432922_146432972	0.341855	CDX1,2,4.p2	AK139419|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr19_-_17447333_17447333	0.341742	CDX1,2,4.p2	D87332|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	NM_010265|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2
mm9_v1_chr5_-_92864088_92864269	0.341193	CDX1,2,4.p2	AK150841|Nup54|269113|nucleoporin 54	AK151896|Nup54|269113|nucleoporin 54	AK152136|Nup54|269113|nucleoporin 54	BC068114|Nup54|269113|nucleoporin 54	AK014260|Nup54|269113|nucleoporin 54	AK087827|Nup54|269113|nucleoporin 54	BC044303|Nup54|269113|nucleoporin 54	AK088855|Nup54|269113|nucleoporin 54	AK150182|Nup54|269113|nucleoporin 54	AK162037|Nup54|269113|nucleoporin 54	AK133841|Nup54|269113|nucleoporin 54	NM_183392|Nup54|269113|nucleoporin 54
mm9_v1_chr4_-_140695648_140695720	0.340802	CDX1,2,4.p2	BC066992|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK171420|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK027934|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK145912|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK171702|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	NM_001025608|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	NM_174996|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed
mm9_v1_chr8_-_128016609_128016654	0.340374	CDX1,2,4.p2	NM_001081337|Sipa1l2|244668|signal-induced proliferation-associated 1 like 2	BC150682|Sipa1l2|244668|signal-induced proliferation-associated 1 like 2
mm9_v1_chr5_-_23897960_23897960	0.340194	CDX1,2,4.p2	AY495541|Atg9b|213948|ATG9 autophagy related 9 homolog B (S. cerevisiae)	AY515313|Atg9b|213948|ATG9 autophagy related 9 homolog B (S. cerevisiae)	NM_001002897|Atg9b|213948|ATG9 autophagy related 9 homolog B (S. cerevisiae)
mm9_v1_chr11_-_99418138_99418166	0.339429	CDX1,2,4.p2	BC117058|Krtap3-2|66708|keratin associated protein 3-2	BC117092|Krtap3-2|66708|keratin associated protein 3-2	AK003615|Krtap3-2|66708|keratin associated protein 3-2	AK014641|Krtap3-2|66708|keratin associated protein 3-2	NM_025720|Krtap3-2|66708|keratin associated protein 3-2
mm9_v1_chr18_+_75160121_75160211	0.338459	CDX1,2,4.p2	NM_001002239|Rpl17|319195|ribosomal protein L17	BC091759|Rpl17|319195|ribosomal protein L17	AK088443|Rpl17|319195|ribosomal protein L17	AK002770|Rpl17|319195|ribosomal protein L17	AK011132|Rpl17|319195|ribosomal protein L17	AK011133|Rpl17|319195|ribosomal protein L17	AK137077|Rpl17|319195|ribosomal protein L17	BC090990|Rpl17|319195|ribosomal protein L17
mm9_v1_chr15_+_89041957_89042070	0.338039	CDX1,2,4.p2	AK084684|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	NM_026813|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	NM_027805|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	AK083335|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	BC024879|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	AK018403|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2
mm9_v1_chrX_+_54662330_54662330	0.337678	CDX1,2,4.p2	NM_001128625|Gm364|245423|predicted gene 364
mm9_v1_chr19_-_38117813_38117907	0.337575	CDX1,2,4.p2	BC150790|Myof|226101|myoferlin	AK086107|Myof|226101|myoferlin	AK173131|Myof|226101|myoferlin	AK087302|Myof|226101|myoferlin	AK031666|Myof|226101|myoferlin	AK087176|Myof|226101|myoferlin
mm9_v1_chr17_-_37095420_37095443	0.336967	CDX1,2,4.p2	AK005976|Znrd1|66136|zinc ribbon domain containing, 1	AK019152|Znrd1|66136|zinc ribbon domain containing, 1
mm9_v1_chr16_-_57292963_57292977	0.336445	CDX1,2,4.p2	AK161475|Tmem30c|71027|transmembrane protein 30C	NM_027651|Tmem30c|71027|transmembrane protein 30C	AK016747|Tmem30c|71027|transmembrane protein 30C	AK016597|Tmem30c|71027|transmembrane protein 30C
mm9_v1_chrX_-_100049954_100049954	0.335901	CDX1,2,4.p2	AK016891|Dmrtc1c|71083|DMRT-like family C1c	NM_001142690|Dmrtc1c2|668357|DMRT-like family C1c2	NM_001142691|Dmrtc1c|71083|DMRT-like family C1c
mm9_v1_chrX_+_104451216_104451366	0.335688	CDX1,2,4.p2	AK171832|Gpr174|213439|G protein-coupled receptor 174	NM_001177781|Gpr174|213439|G protein-coupled receptor 174	AK156069|Gpr174|213439|G protein-coupled receptor 174	AK153611|Gpr174|213439|G protein-coupled receptor 174	NM_001033251|Gpr174|213439|G protein-coupled receptor 174
mm9_v1_chr9_+_99476204_99476272	0.334945	CDX1,2,4.p2	AK050090|Dbr1|83703|debranching enzyme homolog 1 (S. cerevisiae)	NM_031403|Dbr1|83703|debranching enzyme homolog 1 (S. cerevisiae)	BC006661|Dbr1|83703|debranching enzyme homolog 1 (S. cerevisiae)	AK139631|Dbr1|83703|debranching enzyme homolog 1 (S. cerevisiae)	AK090351|Dbr1|83703|debranching enzyme homolog 1 (S. cerevisiae)
mm9_v1_chr4_+_154243693_154243744	0.334572	CDX1,2,4.p2	AF176569|Mmel1|27390|membrane metallo-endopeptidase-like 1	NM_013783|Mmel1|27390|membrane metallo-endopeptidase-like 1	AF157105|Mmel1|27390|membrane metallo-endopeptidase-like 1
mm9_v1_chr17_+_18718690_18718690	0.334068	CDX1,2,4.p2	NM_001104547|Vmn2r96|433070|vomeronasal 2, receptor 96
mm9_v1_chr7_-_16872094_16872145	0.333642	CDX1,2,4.p2	AK134892|Ccdc9|243846|coiled-coil domain containing 9	NM_001136471|Ccdc9|243846|coiled-coil domain containing 9
mm9_v1_chr14_+_55551531_55551607	0.333181	CDX1,2,4.p2	BC120568|Il25|140806|interleukin 25	BC125524|Il25|140806|interleukin 25	BC144962|Il25|140806|interleukin 25	NM_080729|Il25|140806|interleukin 25	AF458060|Il25|140806|interleukin 25
mm9_v1_chr6_+_64992584_64992660	0.333104	CDX1,2,4.p2	NM_007958|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	X69942|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm9_v1_chr12_-_88813216_88813284	0.332342	CDX1,2,4.p2	AK167695|Snw1|66354|SNW domain containing 1	AX775977|Snw1|66354|SNW domain containing 1	AX775979|Snw1|66354|SNW domain containing 1	AK166163|Snw1|66354|SNW domain containing 1	NM_025507|Snw1|66354|SNW domain containing 1
mm9_v1_chr11_+_106650565_106650638	0.33212	CDX1,2,4.p2	NM_001166685|Ccdc45|320162|coiled-coil domain containing 45	NM_177088|Ccdc45|320162|coiled-coil domain containing 45	AK076400|Ccdc45|320162|coiled-coil domain containing 45	AK165351|Ccdc45|320162|coiled-coil domain containing 45	BC116308|Ccdc45|320162|coiled-coil domain containing 45	BC116309|Ccdc45|320162|coiled-coil domain containing 45	BC090675|Ccdc45|320162|coiled-coil domain containing 45	AK052705|Ccdc45|320162|coiled-coil domain containing 45
mm9_v1_chr3_-_108643390_108643483	0.331073	CDX1,2,4.p2	AK152261|Stxbp3a|20912|syntaxin binding protein 3A	AK151466|Stxbp3a|20912|syntaxin binding protein 3A	AK155133|Stxbp3a|20912|syntaxin binding protein 3A	D30798|Stxbp3a|20912|syntaxin binding protein 3A	NM_011504|Stxbp3a|20912|syntaxin binding protein 3A	AK169799|Stxbp3a|20912|syntaxin binding protein 3A	BC094055|Stxbp3a|20912|syntaxin binding protein 3A	BC062901|Stxbp3a|20912|syntaxin binding protein 3A	AK050247|Stxbp3a|20912|syntaxin binding protein 3A	AK138609|Stxbp3a|20912|syntaxin binding protein 3A	DQ083989|Stxbp3b|619371|syntaxin-binding protein 3B
mm9_v1_chr7_-_107663293_107663468	0.33035	CDX1,2,4.p2	AK139680|Dnajb13|69387|DnaJ (Hsp40) related, subfamily B, member 13	BC048501|Dnajb13|69387|DnaJ (Hsp40) related, subfamily B, member 13	NM_153527|Dnajb13|69387|DnaJ (Hsp40) related, subfamily B, member 13	AF419292|Dnajb13|69387|DnaJ (Hsp40) related, subfamily B, member 13
mm9_v1_chr8_+_26750755_26750755	0.329622	CDX1,2,4.p2	NM_001081269|Whsc1l1|234135|Wolf-Hirschhorn syndrome candidate 1-like 1 (human)
mm9_v1_chr10_-_90612412_90612509	0.329213	CDX1,2,4.p2	AK208952|Tmpo|21917|thymopoietin
mm9_v1_chr19_-_56622502_56622559	0.329208	CDX1,2,4.p2	NM_018831|Dclre1a|55947|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm9_v1_chr18_+_37170365_37170627	0.328147	CDX1,2,4.p2	AK141960|Pcdha11|12942|protocadherin alpha 11	AK139436|Pcdha11|12942|protocadherin alpha 11	AK043705|Pcdha11|12942|protocadherin alpha 11	BC141349|Pcdha11|12942|protocadherin alpha 11	AY013758|Pcdha11|12942|protocadherin alpha 11	NM_009960|Pcdha11|12942|protocadherin alpha 11	AB008182|Pcdha11|12942|protocadherin alpha 11
mm9_v1_chr11_-_101969089_101969147	0.328085	CDX1,2,4.p2	BC010821|Pyy|217212|peptide YY	NM_145435|Pyy|217212|peptide YY	AK050518|Pyy|217212|peptide YY
mm9_v1_chr15_+_80453912_80453951	0.327141	CDX1,2,4.p2	AF055465|Grap2|17444|GRB2-related adaptor protein 2	NM_010815|Grap2|17444|GRB2-related adaptor protein 2	AK156939|Grap2|17444|GRB2-related adaptor protein 2	AJ011735|Grap2|17444|GRB2-related adaptor protein 2	AF129477|Grap2|17444|GRB2-related adaptor protein 2	AF236118|Grap2|17444|GRB2-related adaptor protein 2
mm9_v1_chr1_-_145454821_145454855	0.326933	CDX1,2,4.p2	AK029710|Cdc73|214498|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr13_+_13274982_13275048	0.326463	CDX1,2,4.p2	AK145824|Prl2c5|107849|prolactin family 2, subfamily c, member 5	BC132514|Prl2c5|107849|prolactin family 2, subfamily c, member 5	BC132516|Prl2c5|107849|prolactin family 2, subfamily c, member 5	AF128884|Prl2c5|107849|prolactin family 2, subfamily c, member 5	NM_181852|Prl2c5|107849|prolactin family 2, subfamily c, member 5
mm9_v1_chr7_-_80686630_80686631	0.32618	CDX1,2,4.p2	AK133596|Chd2|244059|chromodomain helicase DNA binding protein 2	AK040559|Chd2|244059|chromodomain helicase DNA binding protein 2	AK132638|Chd2|244059|chromodomain helicase DNA binding protein 2	AK136686|Chd2|244059|chromodomain helicase DNA binding protein 2	NM_001081345|Chd2|244059|chromodomain helicase DNA binding protein 2
mm9_v1_chr17_-_37095372_37095414	0.32549	CDX1,2,4.p2	AK003714|Znrd1|66136|zinc ribbon domain containing, 1	NM_023162|Znrd1|66136|zinc ribbon domain containing, 1	BC043016|Znrd1|66136|zinc ribbon domain containing, 1
mm9_v1_chr14_+_99498642_99498692	0.325446	CDX1,2,4.p2	AK017107|Pibf1|52023|progesterone immunomodulatory binding factor 1	NM_029320|Pibf1|52023|progesterone immunomodulatory binding factor 1	NM_029454|Pibf1|52023|progesterone immunomodulatory binding factor 1
mm9_v1_chr4_-_94595442_94595518	0.325087	CDX1,2,4.p2	AB438105|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	AB438106|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	AK006446|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	DQ336137|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	AK016313|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	BC089517|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	NM_027089|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	AK016738|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	EU828781|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	EU828782|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene
mm9_v1_chr13_-_37142112_37142112	0.325039	CDX1,2,4.p2	AK030914|F13a1|74145|coagulation factor XIII, A1 subunit	NM_001166391|F13a1|74145|coagulation factor XIII, A1 subunit
mm9_v1_chrX_+_30977792_30977837	0.323894	CDX1,2,4.p2	NM_001168337|Gm2825|100040533|predicted gene 2825	AK006065|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AB055854|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AB055856|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AB055855|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like
mm9_v1_chrX_+_30245481_30245481	0.322917	CDX1,2,4.p2	NM_001085553|Gm10921|668963|predicted gene 10921
mm9_v1_chr7_+_20094042_20094114	0.322615	CDX1,2,4.p2	BC106114|Trappc6a|67091|trafficking protein particle complex 6A	NM_025960|Trappc6a|67091|trafficking protein particle complex 6A	AK007965|Trappc6a|67091|trafficking protein particle complex 6A	AK008022|Trappc6a|67091|trafficking protein particle complex 6A	AK008462|Trappc6a|67091|trafficking protein particle complex 6A	AK088832|Trappc6a|67091|trafficking protein particle complex 6A	BC020128|Trappc6a|67091|trafficking protein particle complex 6A	AK015839|Trappc6a|67091|trafficking protein particle complex 6A
mm9_v1_chr17_+_24544500_24544654	0.322591	CDX1,2,4.p2	BC049911|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3	BC056614|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3
mm9_v1_chrX_+_53389748_53389754	0.322404	CDX1,2,4.p2	AK014416|3830403N18Rik|70691|RIKEN cDNA 3830403N18 gene	NM_027510|3830403N18Rik|70691|RIKEN cDNA 3830403N18 gene	AK014417|3830403N18Rik|70691|RIKEN cDNA 3830403N18 gene
mm9_v1_chr15_+_9001154_9001214	0.32235	CDX1,2,4.p2	BC115776|1110020G09Rik|68646|RIKEN cDNA 1110020G09 gene
mm9_v1_chr6_+_126889979_126890004	0.322334	CDX1,2,4.p2	AK037095|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK045541|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	NM_138594|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK043521|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK137201|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK042976|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK046707|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed
mm9_v1_chrX_-_3243543_3243628	0.322236	CDX1,2,4.p2	NM_001099643|Gm3750|100042254|predicted gene 3750	AB055855|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AB055856|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	BC115962|Gm2933|100040732|predicted gene 2933	AB055854|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AK006065|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	NM_001085545|Gm14345|630022|predicted gene 14345	NM_001085551|Gm14346|668958|predicted gene 14346	NM_001085552|Gm14351|668960|predicted gene 14351
mm9_v1_chr14_-_75991756_75991791	0.32159	CDX1,2,4.p2	AY092416|Spert|67926|spermatid associated	AK007022|Spert|67926|spermatid associated	BC109147|Spert|67926|spermatid associated	AK005703|Spert|67926|spermatid associated	NM_001164141|Spert|67926|spermatid associated	NM_026457|Spert|67926|spermatid associated
mm9_v1_chr5_+_113786313_113786453	0.321527	CDX1,2,4.p2	AF069744|Aym1|503692|activator of yeast meiotic promoters 1	NM_001012726|Aym1|503692|activator of yeast meiotic promoters 1	BC145860|Aym1|503692|activator of yeast meiotic promoters 1	BC145862|Aym1|503692|activator of yeast meiotic promoters 1
mm9_v1_chr9_-_109064517_109064535	0.320687	CDX1,2,4.p2	BC099397|Fbxw21|320082|F-box and WD-40 domain protein 21	AK136136|Fbxw21|320082|F-box and WD-40 domain protein 21	AK087902|Fbxw21|320082|F-box and WD-40 domain protein 21	AK135949|Fbxw21|320082|F-box and WD-40 domain protein 21	AK087710|Fbxw21|320082|F-box and WD-40 domain protein 21	NM_177069|Fbxw21|320082|F-box and WD-40 domain protein 21
mm9_v1_chr4_-_112447424_112447470	0.320465	CDX1,2,4.p2	EF494906|Skint10|230613|selection and upkeep of intraepithelial T cells 10	EF494905|Skint10|230613|selection and upkeep of intraepithelial T cells 10	AK037152|Skint10|230613|selection and upkeep of intraepithelial T cells 10	AK042291|Skint10|230613|selection and upkeep of intraepithelial T cells 10	NM_177668|Skint10|230613|selection and upkeep of intraepithelial T cells 10	AK040044|Skint10|230613|selection and upkeep of intraepithelial T cells 10
mm9_v1_chr2_-_155937623_155937702	0.320451	CDX1,2,4.p2	AK220288|Cpne1|266692|copine I	BC052473|Rbm12|75710|RNA binding motif protein 12	BC057554|Cpne1|266692|copine I	AK035014|Rbm12|75710|RNA binding motif protein 12	AK080772|Rbm12|75710|RNA binding motif protein 12	AF393215|Rbm12|75710|RNA binding motif protein 12	AF393216|Rbm12|75710|RNA binding motif protein 12	AK028882|Cpne1|266692|copine I	AK152323|Cpne1|266692|copine I	NM_029397|Rbm12|75710|RNA binding motif protein 12	NM_170588|Cpne1|266692|copine I	NM_170590|Cpne1|266692|copine I	NM_170598|Rbm12|75710|RNA binding motif protein 12
mm9_v1_chr14_+_31292797_31292864	0.319912	CDX1,2,4.p2	BC066173|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)	AK047460|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)	AK171707|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)
mm9_v1_chr15_-_74813781_74813859	0.319462	CDX1,2,4.p2	AF232024|Ly6i|57248|lymphocyte antigen 6 complex, locus I	BC125350|Ly6i|57248|lymphocyte antigen 6 complex, locus I	BC132052|Ly6i|57248|lymphocyte antigen 6 complex, locus I	BC145087|Ly6i|57248|lymphocyte antigen 6 complex, locus I	NM_020498|Ly6i|57248|lymphocyte antigen 6 complex, locus I
mm9_v1_chr10_+_21993165_21993285	0.319344	CDX1,2,4.p2	NM_001177775|H60b|667281|histocompatibility 60b	FJ594066|Raet1d|56554|retinoic acid early transcript delta
mm9_v1_chr8_+_86939262_86939275	0.319182	CDX1,2,4.p2	AK147288|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	NM_007578|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147277|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147498|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147697|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm9_v1_chr6_-_87759747_87759783	0.318632	CDX1,2,4.p2	NM_133717|Rab43|69834|RAB43, member RAS oncogene family	BC010248|Rab43|69834|RAB43, member RAS oncogene family
mm9_v1_chr5_+_147196560_147196581	0.318554	CDX1,2,4.p2	AK044481|Wasf3|245880|WAS protein family, member 3	BC027038|Wasf3|245880|WAS protein family, member 3	NM_145155|Wasf3|245880|WAS protein family, member 3
mm9_v1_chrX_-_50622974_50623027	0.318006	CDX1,2,4.p2	AK036417|Fam122b|78755|family with sequence similarity 122, member B	AK044896|Fam122b|78755|family with sequence similarity 122, member B	NM_001166365|Fam122b|78755|family with sequence similarity 122, member B	NM_001166583|Fam122b|78755|family with sequence similarity 122, member B	NM_030167|Fam122b|78755|family with sequence similarity 122, member B
mm9_v1_chr5_+_96204888_96204888	0.317859	CDX1,2,4.p2	AK087741|E330014E10Rik|665943|RIKEN cDNA E330014E10 gene	NM_001122668|E330014E10Rik|665943|RIKEN cDNA E330014E10 gene
mm9_v1_chr8_-_72433344_72433376	0.317776	CDX1,2,4.p2	AK004386|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr1_-_95239254_95239365	0.317453	CDX1,2,4.p2	AK129063|Pask|269224|PAS domain containing serine/threonine kinase	AK083590|Pask|269224|PAS domain containing serine/threonine kinase	AK083528|Pask|269224|PAS domain containing serine/threonine kinase	NM_080850|Pask|269224|PAS domain containing serine/threonine kinase	AK028435|Pask|269224|PAS domain containing serine/threonine kinase
mm9_v1_chr10_-_127999933_127999966	0.316938	CDX1,2,4.p2	AK205907|Pa2g4|18813|proliferation-associated 2G4	AK207779|Pa2g4|18813|proliferation-associated 2G4
mm9_v1_chrX_-_31350951_31350996	0.316612	CDX1,2,4.p2	AB055855|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AB055856|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AB055854|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AK006065|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	NM_001099333|Gm2863|100040606|predicted gene 2863
mm9_v1_chr13_-_67162084_67162105	0.31623	CDX1,2,4.p2	AK019536|Zfp712|78251|zinc finger protein 712	NM_001166218|Zfp712|78251|zinc finger protein 712
mm9_v1_chr2_+_91366966_91366992	0.315047	CDX1,2,4.p2	AK014169|Ckap5|75786|cytoskeleton associated protein 5
mm9_v1_chr3_-_69663781_69663817	0.314191	CDX1,2,4.p2	AK009973|1110032A04Rik|66183|RIKEN cDNA 1110032A04 gene	BC022628|1110032A04Rik|66183|RIKEN cDNA 1110032A04 gene	AF365876|1110032A04Rik|66183|RIKEN cDNA 1110032A04 gene	AK004017|1110032A04Rik|66183|RIKEN cDNA 1110032A04 gene	AK010117|1110032A04Rik|66183|RIKEN cDNA 1110032A04 gene	NM_001164210|1110032A04Rik|66183|RIKEN cDNA 1110032A04 gene	NM_133675|1110032A04Rik|66183|RIKEN cDNA 1110032A04 gene
mm9_v1_chr5_+_116009475_116009502	0.314153	CDX1,2,4.p2	NM_007475|Rplp0|11837|ribosomal protein, large, P0
mm9_v1_chr5_+_142877515_142877558	0.313553	CDX1,2,4.p2	AK144418|Foxk1|17425|forkhead box K1
mm9_v1_chr16_-_89960987_89961071	0.313508	CDX1,2,4.p2	AK017465|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	NM_009384|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	U05245|Tiam1|21844|T-cell lymphoma invasion and metastasis 1
mm9_v1_chr3_-_92568947_92568988	0.313346	CDX1,2,4.p2	BC117062|Lce1h|67718|late cornified envelope 1H	BC119356|Lce1h|67718|late cornified envelope 1H	AK009424|Lce1h|67718|late cornified envelope 1H	AK010064|Lce1h|67718|late cornified envelope 1H	NM_026335|Lce1h|67718|late cornified envelope 1H
mm9_v1_chr3_+_88132260_88132323	0.31308	CDX1,2,4.p2	AK181690|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK185188|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK191578|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK193175|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK194674|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK197570|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK204093|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK204506|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK212912|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK217267|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene
mm9_v1_chr6_-_136870688_136870700	0.312832	CDX1,2,4.p2	BC104406|Erp27|69187|endoplasmic reticulum protein 27	BC104407|Erp27|69187|endoplasmic reticulum protein 27	AK007684|Erp27|69187|endoplasmic reticulum protein 27	AK007800|Erp27|69187|endoplasmic reticulum protein 27	AK131830|Erp27|69187|endoplasmic reticulum protein 27	NM_026983|Erp27|69187|endoplasmic reticulum protein 27
mm9_v1_chr11_+_100720664_100720716	0.31278	CDX1,2,4.p2	NM_011488|Stat5a|20850|signal transducer and activator of transcription 5A	BC013274|Stat5a|20850|signal transducer and activator of transcription 5A
mm9_v1_chr18_+_63137573_63137600	0.312388	CDX1,2,4.p2	AK164149|Napg|108123|N-ethylmaleimide sensitive fusion protein attachment protein gamma
mm9_v1_chr12_+_60230704_60230799	0.312156	CDX1,2,4.p2	NM_001165254|Ctage5|217615|CTAGE family, member 5	NM_146034|Ctage5|217615|CTAGE family, member 5	AK029466|Ctage5|217615|CTAGE family, member 5	AK080312|Ctage5|217615|CTAGE family, member 5	BC026864|Ctage5|217615|CTAGE family, member 5	AK087188|Ctage5|217615|CTAGE family, member 5	AK053010|Ctage5|217615|CTAGE family, member 5
mm9_v1_chr6_+_58257261_58257290	0.311806	CDX1,2,4.p2	BC150722|Vmn1r29|113859|vomeronasal 1 receptor 29	NM_053232|Vmn1r29|113859|vomeronasal 1 receptor 29
mm9_v1_chr19_-_27463532_27463668	0.311782	CDX1,2,4.p2	
mm9_v1_chr11_+_67051128_67051361	0.311735	CDX1,2,4.p2	DQ066415|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066416|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066417|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	AK138608|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	AY963801|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066418|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle
mm9_v1_chr7_-_16225125_16225125	0.31169	CDX1,2,4.p2	AK139750|Obox3|246791|oocyte specific homeobox 3	NM_145707|Obox3|246791|oocyte specific homeobox 3
mm9_v1_chr18_-_60908267_60908331	0.310954	CDX1,2,4.p2	AK147282|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	AK035642|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm9_v1_chr8_+_74012001_74012001	0.310287	CDX1,2,4.p2	AF361482|Gtpbp3|70359|GTP binding protein 3	NM_032544|Gtpbp3|70359|GTP binding protein 3
mm9_v1_chr4_-_102699296_102699446	0.309824	CDX1,2,4.p2	AF054843|Insl5|23919|insulin-like 5	BC010968|Insl5|23919|insulin-like 5	AF076971|Insl5|23919|insulin-like 5	AF133817|Insl5|23919|insulin-like 5	NM_011831|Insl5|23919|insulin-like 5	AF054842|Insl5|23919|insulin-like 5
mm9_v1_chr15_+_76730338_76730405	0.309616	CDX1,2,4.p2	AK013148|Commd5|66398|COMM domain containing 5	AK010045|Commd5|66398|COMM domain containing 5	NM_025536|Commd5|66398|COMM domain containing 5	BC025891|Commd5|66398|COMM domain containing 5
mm9_v1_chr1_+_163072784_163072870	0.309201	CDX1,2,4.p2	AK016757|Ankrd45|73844|ankyrin repeat domain 45	NM_028664|Ankrd45|73844|ankyrin repeat domain 45	BC049713|Ankrd45|73844|ankyrin repeat domain 45
mm9_v1_chr10_+_128258826_128258995	0.307094	CDX1,2,4.p2	NM_025364|Sarnp|66118|SAP domain containing ribonucleoprotein	AK146248|Sarnp|66118|SAP domain containing ribonucleoprotein	AK018773|Sarnp|66118|SAP domain containing ribonucleoprotein	BC157909|Sarnp|66118|SAP domain containing ribonucleoprotein	BC158023|Sarnp|66118|SAP domain containing ribonucleoprotein	BC172063|Sarnp|66118|SAP domain containing ribonucleoprotein	AK003453|Sarnp|66118|SAP domain containing ribonucleoprotein	AK088266|Sarnp|66118|SAP domain containing ribonucleoprotein	BC027510|Sarnp|66118|SAP domain containing ribonucleoprotein	BC094393|Sarnp|66118|SAP domain containing ribonucleoprotein	AK212934|Sarnp|66118|SAP domain containing ribonucleoprotein
mm9_v1_chrX_-_165092598_165092599	0.306797	CDX1,2,4.p2	AK053927|Msl3|17692|male-specific lethal 3 homolog (Drosophila)
mm9_v1_chr5_+_150921233_150921280	0.306574	CDX1,2,4.p2	AK157981|Fry|320365|furry homolog (Drosophila)
mm9_v1_chr4_-_155608927_155608999	0.305814	CDX1,2,4.p2	AY423764|Klhl17|231003|kelch-like 17 (Drosophila)	NM_198305|Klhl17|231003|kelch-like 17 (Drosophila)
mm9_v1_chr3_+_96474053_96474053	0.305537	CDX1,2,4.p2	NM_001081139|Ankrd35|213121|ankyrin repeat domain 35
mm9_v1_chr8_+_84239098_84239098	0.305179	CDX1,2,4.p2	BC064813|Inpp4b|234515|inositol polyphosphate-4-phosphatase, type II	NM_001024617|Inpp4b|234515|inositol polyphosphate-4-phosphatase, type II
mm9_v1_chrX_+_145889719_145889719	0.305024	CDX1,2,4.p2	NM_001099920|Gm15093|100039890|predicted gene 15093
mm9_v1_chrX_+_145540098_145540098	0.305024	CDX1,2,4.p2	NM_001099920|Gm15093|100039890|predicted gene 15093
mm9_v1_chrX_+_144756676_144756676	0.305024	CDX1,2,4.p2	NM_001099920|Gm15093|100039890|predicted gene 15093
mm9_v1_chrX_+_145706919_145706919	0.305024	CDX1,2,4.p2	NM_001099920|Gm15093|100039890|predicted gene 15093
mm9_v1_chrX_+_144923491_144923491	0.305024	CDX1,2,4.p2	NM_001082966|Gm15114|100034729|predicted gene 15114
mm9_v1_chr11_-_101036732_101036756	0.304558	CDX1,2,4.p2	AF215983|Ccr10|12777|chemokine (C-C motif) receptor 10	AF208238|Ccr10|12777|chemokine (C-C motif) receptor 10	AF215982|Ccr10|12777|chemokine (C-C motif) receptor 10	AK090044|Ccr10|12777|chemokine (C-C motif) receptor 10	BC117043|Ccr10|12777|chemokine (C-C motif) receptor 10	BC120542|Ccr10|12777|chemokine (C-C motif) receptor 10	NM_007721|Ccr10|12777|chemokine (C-C motif) receptor 10
mm9_v1_chr5_+_32535080_32535120	0.304472	CDX1,2,4.p2	AK030142|Plb1|665270|phospholipase B1	NM_030072|Plb1|665270|phospholipase B1	AK015301|Plb1|665270|phospholipase B1	AK019494|Plb1|665270|phospholipase B1	AK015993|Plb1|665270|phospholipase B1
mm9_v1_chr11_-_94515034_94515062	0.30415	CDX1,2,4.p2	BC089459|Eme1|268465|essential meiotic endonuclease 1 homolog 1 (S. pombe)
mm9_v1_chr15_-_35085306_35085560	0.304096	CDX1,2,4.p2	AF271361|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)	BC049123|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)	U28726|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)	AY058922|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)	BC037440|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)	NM_019635|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)
mm9_v1_chr11_-_33413715_33413767	0.303297	CDX1,2,4.p2	NM_023146|Ranbp17|66011|RAN binding protein 17
mm9_v1_chr10_-_80380806_80381016	0.301877	CDX1,2,4.p2	AK180471|Lmnb2|16907|lamin B2	X54098|Lmnb2|16907|lamin B2	BC051985|Lmnb2|16907|lamin B2	BC042430|Lmnb2|16907|lamin B2	NM_010722|Lmnb2|16907|lamin B2
mm9_v1_chrX_+_30598310_30598355	0.301539	CDX1,2,4.p2	NM_001168334|Gm2799|100040482|predicted gene 2799	AK006065|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AB055856|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AB055855|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like
mm9_v1_chr17_+_10512744_10512791	0.301198	CDX1,2,4.p2	AK012373|B930003M22Rik|100526796|RIKEN cDNA B930003M22 gene	AK046926|B930003M22Rik|100526796|RIKEN cDNA B930003M22 gene
mm9_v1_chr6_-_3349470_3349570	0.300806	CDX1,2,4.p2	BC079894|Samd9l|209086|sterile alpha motif domain containing 9-like	AK052535|Samd9l|209086|sterile alpha motif domain containing 9-like	NM_010156|Samd9l|209086|sterile alpha motif domain containing 9-like
mm9_v1_chr2_-_66473008_66473018	0.3008	CDX1,2,4.p2	NM_018852|Scn9a|20274|sodium channel, voltage-gated, type IX, alpha	AK141871|Scn9a|20274|sodium channel, voltage-gated, type IX, alpha
mm9_v1_chr9_+_62686569_62686663	0.297734	CDX1,2,4.p2	AK154414|Cln6|76524|ceroid-lipofuscinosis, neuronal 6	NM_001033175|Cln6|76524|ceroid-lipofuscinosis, neuronal 6	AK154551|Cln6|76524|ceroid-lipofuscinosis, neuronal 6
mm9_v1_chr15_+_98538624_98538661	0.29767	CDX1,2,4.p2	AK077174|Ccdc65|105833|coiled-coil domain containing 65	BC048073|Ccdc65|105833|coiled-coil domain containing 65	AF454432|Ccdc65|105833|coiled-coil domain containing 65	NM_153518|Ccdc65|105833|coiled-coil domain containing 65	BC056947|Ccdc65|105833|coiled-coil domain containing 65	BC060155|Ccdc65|105833|coiled-coil domain containing 65
mm9_v1_chr13_-_56996948_56996948	0.29716	CDX1,2,4.p2	AF139923|Trpc7|26946|transient receptor potential cation channel, subfamily C, member 7	BC117995|Trpc7|26946|transient receptor potential cation channel, subfamily C, member 7	NM_012035|Trpc7|26946|transient receptor potential cation channel, subfamily C, member 7
mm9_v1_chr10_-_4707228_4707322	0.29691	CDX1,2,4.p2	BC089511|Vip|22353|vasoactive intestinal polypeptide	AK018599|Vip|22353|vasoactive intestinal polypeptide	NM_011702|Vip|22353|vasoactive intestinal polypeptide
mm9_v1_chr2_-_146337646_146337787	0.296811	CDX1,2,4.p2	AK038838|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	BC151040|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	BC151041|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	AK157932|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	NM_001033348|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm9_v1_chr9_+_64129387_64129441	0.296315	CDX1,2,4.p2	AK038111|Tipin|66131|timeless interacting protein	AK003451|Tipin|66131|timeless interacting protein	AK003802|Tipin|66131|timeless interacting protein	AK011357|Tipin|66131|timeless interacting protein	NM_025372|Tipin|66131|timeless interacting protein	BC016211|Tipin|66131|timeless interacting protein
mm9_v1_chrX_-_31752420_31752465	0.29624	CDX1,2,4.p2	AB055855|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	BC115962|Gm2933|100040732|predicted gene 2933	NM_001145038|Gm2933|100040732|predicted gene 2933	AB055854|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AK006065|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	NM_001085552|Gm14351|668960|predicted gene 14351
mm9_v1_chrX_+_144435111_144435111	0.295322	CDX1,2,4.p2	NM_001099920|Gm15093|100039890|predicted gene 15093
mm9_v1_chr5_+_95885824_95885878	0.294785	CDX1,2,4.p2	AK054417|D5Ertd577e|320549|DNA segment, Chr 5, ERATO Doi 577, expressed	NM_177187|D5Ertd577e|320549|DNA segment, Chr 5, ERATO Doi 577, expressed	BC145804|D5Ertd577e|320549|DNA segment, Chr 5, ERATO Doi 577, expressed
mm9_v1_chr7_+_111054855_111054855	0.293313	CDX1,2,4.p2	BC137766|Olfr65|18365|olfactory receptor 65	NM_013616|Olfr65|18365|olfactory receptor 65
mm9_v1_chr7_-_91827857_91827907	0.293249	CDX1,2,4.p2	AK002775|Zfand6|65098|zinc finger, AN1-type domain 6	NM_022985|Zfand6|65098|zinc finger, AN1-type domain 6	AK144902|Zfand6|65098|zinc finger, AN1-type domain 6	AK009403|Zfand6|65098|zinc finger, AN1-type domain 6
mm9_v1_chr7_-_149415875_149415881	0.293022	CDX1,2,4.p2	BC111113|Krtap5-5|114666|keratin associated protein 5-5	NM_001037822|Krtap5-5|114666|keratin associated protein 5-5	AK020690|Krtap5-5|114666|keratin associated protein 5-5
mm9_v1_chr10_-_60609031_60609082	0.292895	CDX1,2,4.p2	CT010214|Sgpl1|20397|sphingosine phosphate lyase 1
mm9_v1_chr16_-_44333103_44333308	0.292867	CDX1,2,4.p2	AK171920|Sidt1|320007|SID1 transmembrane family, member 1	AK172408|Sidt1|320007|SID1 transmembrane family, member 1	AK171897|Sidt1|320007|SID1 transmembrane family, member 1	AK047199|Sidt1|320007|SID1 transmembrane family, member 1	AK046836|Sidt1|320007|SID1 transmembrane family, member 1
mm9_v1_chr8_-_74150754_74150876	0.292097	CDX1,2,4.p2	AK141620|Unc13a|382018|unc-13 homolog A (C. elegans)	AK048697|Unc13a|382018|unc-13 homolog A (C. elegans)	AK039579|Unc13a|382018|unc-13 homolog A (C. elegans)
mm9_v1_chr6_+_37755974_37756050	0.291873	CDX1,2,4.p2	AK170346|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	AK146159|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	BC126881|Atp6v0c-ps2|100039636|ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2
mm9_v1_chr8_-_27056759_27056953	0.291295	CDX1,2,4.p2	BC019450|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK189846|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK020410|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase
mm9_v1_chrX_-_3667391_3667436	0.290906	CDX1,2,4.p2	AB055855|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AB055856|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AB055854|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AK006065|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	NM_001085551|Gm14346|668958|predicted gene 14346	NM_001085552|Gm14351|668960|predicted gene 14351
mm9_v1_chr15_+_79501284_79501317	0.290668	CDX1,2,4.p2	AK008133|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK009868|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	NM_172609|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK150787|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK013471|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK049442|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK150360|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK152843|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK167803|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	BC056920|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)
mm9_v1_chrX_+_30732633_30732678	0.290445	CDX1,2,4.p2	NM_001168334|Gm2799|100040482|predicted gene 2799	NM_027955|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AK006065|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AB055854|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AB055856|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AB055855|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like
mm9_v1_chr7_+_134120041_134120186	0.290335	CDX1,2,4.p2	BC024413|Cdipt|52858|CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
mm9_v1_chr8_+_131591033_131591104	0.289516	CDX1,2,4.p2	AK005764|1700008F21Rik|75453|RIKEN cDNA 1700008F21 gene	NM_001168369|1700008F21Rik|75453|RIKEN cDNA 1700008F21 gene	NM_029292|1700008F21Rik|75453|RIKEN cDNA 1700008F21 gene	AK076548|1700008F21Rik|75453|RIKEN cDNA 1700008F21 gene	BC147560|1700008F21Rik|75453|RIKEN cDNA 1700008F21 gene
mm9_v1_chr7_+_13466525_13466568	0.289327	CDX1,2,4.p2	AK132244|Zfp128|243833|zinc finger protein 128	AK035906|Zfp128|243833|zinc finger protein 128	NM_153802|Zfp128|243833|zinc finger protein 128	AK032046|Zfp128|243833|zinc finger protein 128	BC088998|Zfp128|243833|zinc finger protein 128	BC094248|Zfp128|243833|zinc finger protein 128	AF480861|Zfp128|243833|zinc finger protein 128
mm9_v1_chr11_-_121534350_121534391	0.289241	CDX1,2,4.p2	BC088993|B3gntl1|210004|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	AK045461|B3gntl1|210004|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1
mm9_v1_chr15_+_102275797_102275866	0.289138	CDX1,2,4.p2	NM_144547|Amhr2|110542|anti-Mullerian hormone type 2 receptor	AF503863|Amhr2|110542|anti-Mullerian hormone type 2 receptor	BC119571|Amhr2|110542|anti-Mullerian hormone type 2 receptor
mm9_v1_chr7_+_26404382_26404511	0.288714	CDX1,2,4.p2	AK021146|Atp5sl|66349|ATP5S-like	AK009150|Atp5sl|66349|ATP5S-like	AK002370|Atp5sl|66349|ATP5S-like	AK039669|Atp5sl|66349|ATP5S-like	NM_025504|Atp5sl|66349|ATP5S-like
mm9_v1_chr2_+_102498839_102498845	0.288627	CDX1,2,4.p2	AK134609|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077514|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AK140095|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chrX_+_3907010_3907055	0.288611	CDX1,2,4.p2	NM_001085543|Gm14347|627264|predicted gene 14347	AB055854|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AB055855|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like
mm9_v1_chr2_-_101489613_101489698	0.287949	CDX1,2,4.p2	BC138342|Rag1|19373|recombination activating gene 1	M29475|Rag1|19373|recombination activating gene 1	AK088725|Rag1|19373|recombination activating gene 1	AK162974|Rag1|19373|recombination activating gene 1	DQ112091|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	DQ112092|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	NM_009019|Rag1|19373|recombination activating gene 1
mm9_v1_chr11_-_69509498_69509599	0.287603	CDX1,2,4.p2	AK170297|Tnfsf12|21944|tumor necrosis factor (ligand) superfamily, member 12	AK171014|Tnfsf12|21944|tumor necrosis factor (ligand) superfamily, member 12	AK044387|BC096441|619441|cDNA sequence BC096441	NM_001034097|BC096441|619441|cDNA sequence BC096441	NM_001159503|BC096441|619441|cDNA sequence BC096441	NM_011614|Tnfsf12|21944|tumor necrosis factor (ligand) superfamily, member 12
mm9_v1_chr6_+_123974775_123974775	0.287555	CDX1,2,4.p2	AF053985|Vmn2r26|56552|vomeronasal 2, receptor 26	AY426342|Vmn2r26|56552|vomeronasal 2, receptor 26	NM_019917|Vmn2r26|56552|vomeronasal 2, receptor 26
mm9_v1_chr6_-_41396095_41396143	0.286971	CDX1,2,4.p2	NM_001103153|Gm10334|100040233|predicted gene 10334	BC141304|Prss3|22073|protease, serine, 3
mm9_v1_chr5_-_100927591_100927596	0.284732	CDX1,2,4.p2	AK030894|Lin54|231506|lin-54 homolog (C. elegans)	NM_001115010|Lin54|231506|lin-54 homolog (C. elegans)	AK028016|Lin54|231506|lin-54 homolog (C. elegans)
mm9_v1_chr5_-_92792262_92792321	0.284213	CDX1,2,4.p2	AK040051|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	BC025903|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	AF136449|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	AF178672|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	AF179872|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	NM_019494|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	AK020750|Cxcl11|56066|chemokine (C-X-C motif) ligand 11
mm9_v1_chr15_+_78744328_78744471	0.283422	CDX1,2,4.p2	BC049107|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	NM_020271|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	AY366300|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	AK043228|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	BC046955|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	AB041662|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase
mm9_v1_chr4_-_94223435_94223491	0.281411	CDX1,2,4.p2	AK046647|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK076487|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK013385|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK032696|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	BC020067|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK150311|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK140382|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK171141|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK160297|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK160572|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	NM_026368|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene
mm9_v1_chr11_-_101163456_101163604	0.280683	CDX1,2,4.p2	AK189474|Becn1|56208|beclin 1, autophagy related	AK178460|Becn1|56208|beclin 1, autophagy related	AK151531|Becn1|56208|beclin 1, autophagy related	BC005770|Becn1|56208|beclin 1, autophagy related	BC027738|Becn1|56208|beclin 1, autophagy related	AK028851|Becn1|56208|beclin 1, autophagy related	AK083800|Becn1|56208|beclin 1, autophagy related	AK031501|Becn1|56208|beclin 1, autophagy related	AK032176|Becn1|56208|beclin 1, autophagy related	AK050329|Becn1|56208|beclin 1, autophagy related	NM_019584|Becn1|56208|beclin 1, autophagy related	AK077392|Becn1|56208|beclin 1, autophagy related
mm9_v1_chr1_-_63160764_63160840	0.280058	CDX1,2,4.p2	AK049468|Ino80d|227195|INO80 complex subunit D	NM_001081436|Ino80d|227195|INO80 complex subunit D	NM_001114609|Ino80d|227195|INO80 complex subunit D
mm9_v1_chrX_+_157205944_157206093	0.279505	CDX1,2,4.p2	BC046422|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)	NM_011302|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)	AF084561|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)	AF073780|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)	AJ011381|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)
mm9_v1_chr2_+_32218529_32218697	0.279186	CDX1,2,4.p2	AK165687|Ciz1|68379|CDKN1A interacting zinc finger protein 1	AK137961|Ciz1|68379|CDKN1A interacting zinc finger protein 1
mm9_v1_chr11_-_105318037_105318048	0.279001	CDX1,2,4.p2	AK132734|March10|632687|membrane-associated ring finger (C3HC4) 10	BC100474|March10|632687|membrane-associated ring finger (C3HC4) 10	NM_001039242|March10|632687|membrane-associated ring finger (C3HC4) 10	NM_172568|March10|632687|membrane-associated ring finger (C3HC4) 10
mm9_v1_chr5_-_23289370_23289531	0.278804	CDX1,2,4.p2	BC138533|Pus7|78697|pseudouridylate synthase 7 homolog (S. cerevisiae)	BC145316|Pus7|78697|pseudouridylate synthase 7 homolog (S. cerevisiae)	AK173290|Pus7|78697|pseudouridylate synthase 7 homolog (S. cerevisiae)	AK160849|Pus7|78697|pseudouridylate synthase 7 homolog (S. cerevisiae)	NM_178403|Pus7|78697|pseudouridylate synthase 7 homolog (S. cerevisiae)	BC008544|Pus7|78697|pseudouridylate synthase 7 homolog (S. cerevisiae)	AK142271|Pus7|78697|pseudouridylate synthase 7 homolog (S. cerevisiae)
mm9_v1_chr5_+_81450617_81450617	0.27866	CDX1,2,4.p2	BC088989|Lphn3|319387|latrophilin 3	NM_198702|Lphn3|319387|latrophilin 3
mm9_v1_chr11_-_99459418_99459419	0.277818	CDX1,2,4.p2	AK009730|Krtap9-3|75586|keratin associated protein 9-3	AK131927|Krtap9-3|75586|keratin associated protein 9-3	NM_029351|Krtap9-3|75586|keratin associated protein 9-3
mm9_v1_chr4_+_134481298_134481299	0.277684	CDX1,2,4.p2	
mm9_v1_chr9_+_65283563_65283648	0.277477	CDX1,2,4.p2	AK009430|Mtfmt|69606|mitochondrial methionyl-tRNA formyltransferase	NM_027134|Mtfmt|69606|mitochondrial methionyl-tRNA formyltransferase	AK133492|Mtfmt|69606|mitochondrial methionyl-tRNA formyltransferase	BC019509|Mtfmt|69606|mitochondrial methionyl-tRNA formyltransferase
mm9_v1_chr3_-_41546402_41546435	0.277386	CDX1,2,4.p2	BC043136|Sclt1|67161|sodium channel and clathrin linker 1	BC060271|Sclt1|67161|sodium channel and clathrin linker 1	AK083894|Sclt1|67161|sodium channel and clathrin linker 1	AK016469|Sclt1|67161|sodium channel and clathrin linker 1	NM_001081411|Sclt1|67161|sodium channel and clathrin linker 1
mm9_v1_chr8_+_24249481_24249576	0.277374	CDX1,2,4.p2	U73972|Ank1|11733|ankyrin 1, erythroid	BC061219|Ank1|11733|ankyrin 1, erythroid	AK134267|Ank1|11733|ankyrin 1, erythroid
mm9_v1_chr5_-_115273443_115273497	0.276963	CDX1,2,4.p2	AK148078|2610524H06Rik|330173|RIKEN cDNA 2610524H06 gene	BC089033|2610524H06Rik|330173|RIKEN cDNA 2610524H06 gene	BC096574|2610524H06Rik|330173|RIKEN cDNA 2610524H06 gene	AK012147|2610524H06Rik|330173|RIKEN cDNA 2610524H06 gene	NM_181075|2610524H06Rik|330173|RIKEN cDNA 2610524H06 gene
mm9_v1_chr9_-_107888239_107888272	0.276757	CDX1,2,4.p2	NM_026597|6230427J02Rik|68176|RIKEN cDNA 6230427J02 gene
mm9_v1_chr8_-_119098475_119098517	0.275806	CDX1,2,4.p2	
mm9_v1_chr3_-_135271247_135271409	0.275773	CDX1,2,4.p2	AK159423|Nfkb1|18033|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105	S66656|Nfkb1|18033|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105	S89033|Nfkb1|18033|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105
mm9_v1_chr1_+_9537027_9537275	0.27551	CDX1,2,4.p2	AK214958|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AK013172|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)
mm9_v1_chr5_+_88885015_88885035	0.274701	CDX1,2,4.p2	AK017250|Ambn|11698|ameloblastin	BC087927|Ambn|11698|ameloblastin	NM_009664|Ambn|11698|ameloblastin	U65021|Ambn|11698|ameloblastin
mm9_v1_chr8_-_125421315_125421317	0.273926	CDX1,2,4.p2	
mm9_v1_chr13_+_52678866_52678871	0.27315	CDX1,2,4.p2	BC065121|Sykb|20963|spleen tyrosine kinase
mm9_v1_chr3_-_115832327_115832378	0.271975	CDX1,2,4.p2	U12884|Vcam1|22329|vascular cell adhesion molecule 1	M84487|Vcam1|22329|vascular cell adhesion molecule 1	L08431|Vcam1|22329|vascular cell adhesion molecule 1	BC011159|Vcam1|22329|vascular cell adhesion molecule 1	AK016465|Vcam1|22329|vascular cell adhesion molecule 1	AK030195|Vcam1|22329|vascular cell adhesion molecule 1	AK143401|Vcam1|22329|vascular cell adhesion molecule 1	AK162954|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chr11_+_75813413_75813528	0.270522	CDX1,2,4.p2	NM_198637|1700016K19Rik|74230|RIKEN cDNA 1700016K19 gene	BC049758|1700016K19Rik|74230|RIKEN cDNA 1700016K19 gene	AK006044|1700016K19Rik|74230|RIKEN cDNA 1700016K19 gene	AK132806|1700016K19Rik|74230|RIKEN cDNA 1700016K19 gene
mm9_v1_chr18_+_80409068_80409205	0.270516	CDX1,2,4.p2	AK183256|Txnl4a|27366|thioredoxin-like 4A
mm9_v1_chrX_-_35988248_35988263	0.269969	CDX1,2,4.p2	AK005118|C1galt1c1|59048|C1GALT1-specific chaperone 1	AK161729|C1galt1c1|59048|C1GALT1-specific chaperone 1	AK008040|C1galt1c1|59048|C1GALT1-specific chaperone 1
mm9_v1_chrX_+_71422597_71422622	0.268409	CDX1,2,4.p2	AK029546|Tktl1|83553|transketolase-like 1	AK139841|Tktl1|83553|transketolase-like 1	NM_031379|Tktl1|83553|transketolase-like 1	AF285571|Tktl1|83553|transketolase-like 1	BC113768|Tktl1|83553|transketolase-like 1
mm9_v1_chr11_+_43247252_43247280	0.268292	CDX1,2,4.p2	BC082780|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	BC025870|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	AK046262|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	AK029117|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	AK049178|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	BC060954|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)
mm9_v1_chr18_+_63137498_63137527	0.268268	CDX1,2,4.p2	AK010275|Napg|108123|N-ethylmaleimide sensitive fusion protein attachment protein gamma
mm9_v1_chr11_-_115884712_115884736	0.268234	CDX1,2,4.p2	AK213191|H3f3b|15081|H3 histone, family 3B
mm9_v1_chr10_+_126504125_126504226	0.268143	CDX1,2,4.p2	
mm9_v1_chr7_+_25421551_25421577	0.267871	CDX1,2,4.p2	BC094282|Lypd3|72434|Ly6/Plaur domain containing 3	AK009998|Lypd3|72434|Ly6/Plaur domain containing 3
mm9_v1_chr17_-_45570469_45570504	0.26708	CDX1,2,4.p2	BC003893|Cdc5l|71702|cell division cycle 5-like (S. pombe)	AK150562|Cdc5l|71702|cell division cycle 5-like (S. pombe)	AK150861|Cdc5l|71702|cell division cycle 5-like (S. pombe)	AK146892|Cdc5l|71702|cell division cycle 5-like (S. pombe)	AK172950|Cdc5l|71702|cell division cycle 5-like (S. pombe)
mm9_v1_chr10_+_10869224_10869321	0.266888	CDX1,2,4.p2	AK082160|Shprh|268281|SNF2 histone linker PHD RING helicase	AK053448|Shprh|268281|SNF2 histone linker PHD RING helicase	NM_001077707|Shprh|268281|SNF2 histone linker PHD RING helicase	NM_172937|Shprh|268281|SNF2 histone linker PHD RING helicase	BC055003|Shprh|268281|SNF2 histone linker PHD RING helicase	AK048265|Shprh|268281|SNF2 histone linker PHD RING helicase	AK085285|Shprh|268281|SNF2 histone linker PHD RING helicase	AK011809|Shprh|268281|SNF2 histone linker PHD RING helicase	AY162264|Shprh|268281|SNF2 histone linker PHD RING helicase	AY162266|Shprh|268281|SNF2 histone linker PHD RING helicase
mm9_v1_chr2_-_158187209_158187269	0.266768	CDX1,2,4.p2	AK046044|9430008C03Rik|68108|RIKEN cDNA 9430008C03 gene	AK040893|9430008C03Rik|68108|RIKEN cDNA 9430008C03 gene	AK007971|9430008C03Rik|68108|RIKEN cDNA 9430008C03 gene	AK079109|9430008C03Rik|68108|RIKEN cDNA 9430008C03 gene
mm9_v1_chr1_+_34592492_34592534	0.266745	CDX1,2,4.p2	NM_007685|Cfc1|12627|cripto, FRL-1, cryptic family 1	U57720|Cfc1|12627|cripto, FRL-1, cryptic family 1	BC100705|Cfc1|12627|cripto, FRL-1, cryptic family 1	BC100706|Cfc1|12627|cripto, FRL-1, cryptic family 1	BC100708|Cfc1|12627|cripto, FRL-1, cryptic family 1	BC100711|Cfc1|12627|cripto, FRL-1, cryptic family 1
mm9_v1_chr12_-_29233201_29233201	0.266661	CDX1,2,4.p2	AK003729|Dcdc2c|68511|doublecortin domain containing 2C	NM_001177964|Dcdc2c|68511|doublecortin domain containing 2C
mm9_v1_chr9_-_57287763_57287952	0.265346	CDX1,2,4.p2	AK031599|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	AK038628|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	AK036042|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	AK078825|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	AK007887|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	BC004779|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	NM_176831|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase
mm9_v1_chrX_+_42444080_42444121	0.2647	CDX1,2,4.p2	BC060289|1110059M19Rik|68800|RIKEN cDNA 1110059M19 gene	NM_026841|1110059M19Rik|68800|RIKEN cDNA 1110059M19 gene	BC094615|1110059M19Rik|68800|RIKEN cDNA 1110059M19 gene
mm9_v1_chr3_+_108059843_108059843	0.264495	CDX1,2,4.p2	AK143468|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	NM_011967|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5
mm9_v1_chr8_+_73053287_73053425	0.263772	CDX1,2,4.p2	BC003739|Fkbp8|14232|FK506 binding protein 8	AY225340|Fkbp8|14232|FK506 binding protein 8	AK216136|Fkbp8|14232|FK506 binding protein 8	AF030635|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr5_-_109027924_109027935	0.262727	CDX1,2,4.p2	AK034637|Gak|231580|cyclin G associated kinase
mm9_v1_chr5_+_135845811_135845865	0.26158	CDX1,2,4.p2	AK079400|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	NM_145414|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AK156651|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AF412029|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AK149521|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5
mm9_v1_chr2_-_118375365_118375421	0.261201	CDX1,2,4.p2	AK040622|Bmf|171543|BCL2 modifying factor	AK169903|Bmf|171543|BCL2 modifying factor	NM_138313|Bmf|171543|BCL2 modifying factor	AK084658|Bmf|171543|BCL2 modifying factor
mm9_v1_chr5_+_142877419_142877473	0.26087	CDX1,2,4.p2	NM_199068|Foxk1|17425|forkhead box K1	AK147375|Foxk1|17425|forkhead box K1	L26507|Foxk1|17425|forkhead box K1	U95016|Foxk1|17425|forkhead box K1	BC060238|Foxk1|17425|forkhead box K1
mm9_v1_chr19_-_28057437_28057437	0.26047	CDX1,2,4.p2	NM_001166414|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr1_+_132916420_132916446	0.26047	CDX1,2,4.p2	AK152344|Il10|16153|interleukin 10	NM_010548|Il10|16153|interleukin 10	M37897|Il10|16153|interleukin 10	BC120612|Il10|16153|interleukin 10	BC137844|Il10|16153|interleukin 10
mm9_v1_chr10_-_13588578_13588812	0.260418	CDX1,2,4.p2	AK008210|Aig1|66253|androgen-induced 1	NM_025446|Aig1|66253|androgen-induced 1	AK162306|Aig1|66253|androgen-induced 1	AK005332|Aig1|66253|androgen-induced 1	AK084050|Aig1|66253|androgen-induced 1	BC035305|Aig1|66253|androgen-induced 1
mm9_v1_chr6_-_130256444_130256498	0.259802	CDX1,2,4.p2	AF204265|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	AF204266|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	AF204267|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	AF204268|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	BC099861|Klra13-ps|16631|killer cell lectin-like receptor subfamily A, member 13, pseudogene	AF074460|Klra13-ps|16631|killer cell lectin-like receptor subfamily A, member 13, pseudogene	AF283250|Klra23|79410|killer cell lectin-like receptor subfamily A, member 23	AF283251|Klra23|79410|killer cell lectin-like receptor subfamily A, member 23	AF283252|Klra13-ps|16631|killer cell lectin-like receptor subfamily A, member 13, pseudogene	AF307947|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	AF307948|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	NM_010646|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12
mm9_v1_chr4_+_21654837_21654873	0.259438	CDX1,2,4.p2	AK037957|Ccnc|51813|cyclin C	NM_001122982|Ccnc|51813|cyclin C	NM_016746|Ccnc|51813|cyclin C	AK135472|Ccnc|51813|cyclin C	U62638|Ccnc|51813|cyclin C	BC100396|Ccnc|51813|cyclin C
mm9_v1_chr7_+_25184637_25184669	0.259111	CDX1,2,4.p2	AK161454|1500002O20Rik|71997|RIKEN cDNA 1500002O20 gene	NM_028047|1500002O20Rik|71997|RIKEN cDNA 1500002O20 gene	AK005126|1500002O20Rik|71997|RIKEN cDNA 1500002O20 gene	AK039368|1500002O20Rik|71997|RIKEN cDNA 1500002O20 gene	AK141576|1500002O20Rik|71997|RIKEN cDNA 1500002O20 gene
mm9_v1_chr4_+_143947866_143947866	0.258927	CDX1,2,4.p2	BC100406|Gm13119|433779|predicted gene 13119	NM_001034101|Gm13119|433779|predicted gene 13119
mm9_v1_chr2_+_160471695_160471802	0.258818	CDX1,2,4.p2	AK164061|Top1|21969|topoisomerase (DNA) I	AK083930|Top1|21969|topoisomerase (DNA) I	AK166844|Top1|21969|topoisomerase (DNA) I	BC048743|Top1|21969|topoisomerase (DNA) I	BC002095|Top1|21969|topoisomerase (DNA) I	AK160590|Top1|21969|topoisomerase (DNA) I	BC092349|Top1|21969|topoisomerase (DNA) I
mm9_v1_chrX_-_131712152_131712170	0.258323	CDX1,2,4.p2	BC115763|Gm15023|100040635|predicted gene 15023	BC119584|Gm15023|100040635|predicted gene 15023	BC119585|Gm15023|100040635|predicted gene 15023	AK029939|AV320801|331531|expressed sequence AV320801	NM_001099321|Gm15023|100040635|predicted gene 15023	NM_177918|AV320801|331531|expressed sequence AV320801
mm9_v1_chr1_+_85196183_85196282	0.258321	CDX1,2,4.p2	AK156961|Csprs|114564|component of Sp100-rs	NM_001081746|Gm7609|665378|predicted pseudogene 7609	X82357|Csprs|114564|component of Sp100-rs	BC059276|Gm7609|665378|predicted pseudogene 7609
mm9_v1_chr2_-_121206675_121206675	0.258143	CDX1,2,4.p2	AF375593|Strc|140476|stereocilin	NM_080459|Strc|140476|stereocilin
mm9_v1_chr12_-_82480450_82480472	0.258077	CDX1,2,4.p2	BC141094|Gm4787|214321|predicted gene 4787	NM_001038995|Gm4787|214321|predicted gene 4787
mm9_v1_chr3_+_96449506_96449522	0.257965	CDX1,2,4.p2	NM_001081053|Itga10|213119|integrin, alpha 10	BC115770|Itga10|213119|integrin, alpha 10
mm9_v1_chr5_-_123439064_123439107	0.257839	CDX1,2,4.p2	BC065090|Kdm2b|30841|lysine (K)-specific demethylase 2B	AK043352|Kdm2b|30841|lysine (K)-specific demethylase 2B	NM_001003953|Kdm2b|30841|lysine (K)-specific demethylase 2B	AK136625|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr8_-_113862056_113862142	0.257658	CDX1,2,4.p2	AK018636|Mlkl|74568|mixed lineage kinase domain-like	BC023755|Mlkl|74568|mixed lineage kinase domain-like
mm9_v1_chr6_-_51416921_51416984	0.257041	CDX1,2,4.p2	BC059107|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr11_-_69495203_69495445	0.255859	CDX1,2,4.p2	AY008764|Senp3|80886|SUMO/sentrin specific peptidase 3	BC037014|Senp3|80886|SUMO/sentrin specific peptidase 3	AK045071|Senp3|80886|SUMO/sentrin specific peptidase 3
mm9_v1_chr4_+_12016582_12016640	0.255281	CDX1,2,4.p2	AK080943|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene	BC137620|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene
mm9_v1_chr1_+_60761789_60761789	0.255059	CDX1,2,4.p2	BC002266|Eif4a1|13681|eukaryotic translation initiation factor 4A1
mm9_v1_chr1_+_108831025_108831035	0.254801	CDX1,2,4.p2	AK009018|Serpinb12|71869|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	NM_027971|Serpinb12|71869|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12
mm9_v1_chr1_+_162125349_162125420	0.254165	CDX1,2,4.p2	AK007673|Mrps14|64659|mitochondrial ribosomal protein S14	AK010242|Mrps14|64659|mitochondrial ribosomal protein S14	AK144195|Mrps14|64659|mitochondrial ribosomal protein S14	AK083352|Mrps14|64659|mitochondrial ribosomal protein S14	NM_025474|Mrps14|64659|mitochondrial ribosomal protein S14	BC044057|Mrps14|64659|mitochondrial ribosomal protein S14
mm9_v1_chr14_-_109313298_109313300	0.253665	CDX1,2,4.p2	AK144290|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr5_-_109435454_109435489	0.253395	CDX1,2,4.p2	NM_009491|Vmn2r10|22307|vomeronasal 2, receptor 10	AF011426|Vmn2r10|22307|vomeronasal 2, receptor 10
mm9_v1_chr16_-_16504310_16504310	0.253326	CDX1,2,4.p2	AF402612|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139233|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4
mm9_v1_chr2_+_125977876_125977974	0.252976	CDX1,2,4.p2	AK149746|Dtwd1|69185|DTW domain containing 1	NM_026981|Dtwd1|69185|DTW domain containing 1	BC020149|Dtwd1|69185|DTW domain containing 1
mm9_v1_chrX_-_146747906_146747906	0.252933	CDX1,2,4.p2	NM_001101501|Gm15104|333588|predicted gene 15104
mm9_v1_chr1_+_100028032_100028043	0.252468	CDX1,2,4.p2	AK007349|1810006J02Rik|69030|RIKEN cDNA 1810006J02 gene
mm9_v1_chr6_+_66485368_66485514	0.251678	CDX1,2,4.p2	AK166065|Mad2l1|56150|MAD2 mitotic arrest deficient-like 1 (yeast)	AK012590|Mad2l1|56150|MAD2 mitotic arrest deficient-like 1 (yeast)	AK010401|Mad2l1|56150|MAD2 mitotic arrest deficient-like 1 (yeast)	AK082934|Mad2l1|56150|MAD2 mitotic arrest deficient-like 1 (yeast)	NM_019499|Mad2l1|56150|MAD2 mitotic arrest deficient-like 1 (yeast)	AK160286|Mad2l1|56150|MAD2 mitotic arrest deficient-like 1 (yeast)	U83902|Mad2l1|56150|MAD2 mitotic arrest deficient-like 1 (yeast)	BC089012|Mad2l1|56150|MAD2 mitotic arrest deficient-like 1 (yeast)
mm9_v1_chrX_-_100061691_100061691	0.251345	CDX1,2,4.p2	AK006578|1700031F05Rik|73300|RIKEN cDNA 1700031F05 gene	NM_028496|1700031F05Rik|73300|RIKEN cDNA 1700031F05 gene
mm9_v1_chr10_-_6473873_6473873	0.249547	CDX1,2,4.p2	AK135923|Plekhg1|213783|pleckstrin homology domain containing, family G (with RhoGef domain) member 1	NM_001033253|Plekhg1|213783|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
mm9_v1_chrX_+_75983101_75983130	0.249307	CDX1,2,4.p2	AK014848|Fam47a-ps|70864|family with sequence similarity 47, member A, pseudogene	NM_001164739|Fam47a-ps|70864|family with sequence similarity 47, member A, pseudogene	BC115971|Fam47a-ps|70864|family with sequence similarity 47, member A, pseudogene
mm9_v1_chr16_-_58918311_58918311	0.248871	CDX1,2,4.p2	NM_001011662|Olfr180|258178|olfactory receptor 180
mm9_v1_chr1_-_52714729_52714742	0.248434	CDX1,2,4.p2	BC016598|Mfsd6|98682|major facilitator superfamily domain containing 6
mm9_v1_chr17_+_12312128_12312218	0.248416	CDX1,2,4.p2	AK005139|Agpat4|68262|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	NM_026644|Agpat4|68262|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	AK166917|Agpat4|68262|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	BC047281|Agpat4|68262|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
mm9_v1_chr5_-_87919883_87919895	0.248017	CDX1,2,4.p2	BC048926|Ugt2a1|94215|UDP glucuronosyltransferase 2 family, polypeptide A1	AK140757|Ugt2a1|94215|UDP glucuronosyltransferase 2 family, polypeptide A1	NM_053184|Ugt2a1|94215|UDP glucuronosyltransferase 2 family, polypeptide A1
mm9_v1_chr4_+_21654878_21654941	0.246844	CDX1,2,4.p2	AK035762|Ccnc|51813|cyclin C	AK009615|Ccnc|51813|cyclin C	AK035728|Ccnc|51813|cyclin C	AK013273|Ccnc|51813|cyclin C	AK014079|Ccnc|51813|cyclin C	BC003344|Ccnc|51813|cyclin C	AK153035|Ccnc|51813|cyclin C	BC029211|Ccnc|51813|cyclin C	BC087544|Ccnc|51813|cyclin C	BC120649|Ccnc|51813|cyclin C	BC120677|Ccnc|51813|cyclin C	BC062376|Ccnc|51813|cyclin C	BC037689|Ccnc|51813|cyclin C
mm9_v1_chr2_-_30033944_30034014	0.245925	CDX1,2,4.p2	AK044983|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK036945|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK147162|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK046148|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	NM_172660|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed
mm9_v1_chr13_+_74543843_74543994	0.245729	CDX1,2,4.p2	AK213945|Gm15590|100270751|ferritin light chain 1 pseudogene
mm9_v1_chr10_-_38541584_38541584	0.244978	CDX1,2,4.p2	NM_001177783|Rfpl4b|215919|ret finger protein-like 4B
mm9_v1_chr12_-_36979984_36979984	0.244893	CDX1,2,4.p2	AK016859|1700108M19Rik|71156|RIKEN cDNA 1700108M19 gene	NM_001177877|1700108M19Rik|71156|RIKEN cDNA 1700108M19 gene
mm9_v1_chr15_-_36701729_36701849	0.24441	CDX1,2,4.p2	AK149013|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chrX_+_150916544_150916544	0.244324	CDX1,2,4.p2	AK016025|4930542N07Rik|75185|RIKEN cDNA 4930542N07 gene	NM_029199|4930542N07Rik|75185|RIKEN cDNA 4930542N07 gene
mm9_v1_chr11_-_115228986_115229036	0.244235	CDX1,2,4.p2	AK044395|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene	AB087506|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene	AK049861|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene	BC024617|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene	NM_175454|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene
mm9_v1_chr4_+_15885062_15885148	0.242524	CDX1,2,4.p2	AK132302|Nbn|27354|nibrin	AK134805|Nbn|27354|nibrin	AK134960|Nbn|27354|nibrin	AK159790|Nbn|27354|nibrin	BC013190|Nbn|27354|nibrin	NM_013752|Nbn|27354|nibrin	BC044773|Nbn|27354|nibrin	AF076687|Nbn|27354|nibrin	BC055061|Nbn|27354|nibrin	AK031933|Nbn|27354|nibrin	AF092840|Nbn|27354|nibrin	AK160614|Nbn|27354|nibrin
mm9_v1_chr17_+_48226581_48226616	0.241174	CDX1,2,4.p2	NM_026625|1700067P10Rik|68224|RIKEN cDNA 1700067P10 gene	BC048440|1700067P10Rik|68224|RIKEN cDNA 1700067P10 gene	AK018887|1700067P10Rik|68224|RIKEN cDNA 1700067P10 gene	AK015495|1700067P10Rik|68224|RIKEN cDNA 1700067P10 gene
mm9_v1_chr11_+_46553724_46553728	0.240054	CDX1,2,4.p2	NM_001166632|Havcr1|171283|hepatitis A virus cellular receptor 1	BC053400|Havcr1|171283|hepatitis A virus cellular receptor 1
mm9_v1_chr2_+_30271579_30271778	0.240006	CDX1,2,4.p2	AK049184|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	BC006626|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	BC052852|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	AK160980|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	AY035997|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	AK046288|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)
mm9_v1_chr6_-_130017189_130017288	0.239981	CDX1,2,4.p2	NM_010649|Klra4|16635|killer cell lectin-like receptor, subfamily A, member 4	U10090|Klra4|16635|killer cell lectin-like receptor, subfamily A, member 4	BC111866|Klra18|93970|killer cell lectin-like receptor, subfamily A, member 18	AF288377|Klra18|93970|killer cell lectin-like receptor, subfamily A, member 18	NM_053153|Klra18|93970|killer cell lectin-like receptor, subfamily A, member 18	AK080171|Klra4|16635|killer cell lectin-like receptor, subfamily A, member 4
mm9_v1_chr2_+_181054406_181054528	0.239911	CDX1,2,4.p2	NM_001001882|Rtel1|269400|regulator of telomere elongation helicase 1	NM_001166665|Rtel1|269400|regulator of telomere elongation helicase 1	NM_001166666|Rtel1|269400|regulator of telomere elongation helicase 1	NM_001166667|Rtel1|269400|regulator of telomere elongation helicase 1	NM_001166668|Rtel1|269400|regulator of telomere elongation helicase 1	AK142225|Rtel1|269400|regulator of telomere elongation helicase 1	BC057352|Rtel1|269400|regulator of telomere elongation helicase 1	AK145145|Rtel1|269400|regulator of telomere elongation helicase 1	AK173097|Rtel1|269400|regulator of telomere elongation helicase 1	AY481619|Rtel1|269400|regulator of telomere elongation helicase 1	AY481620|Rtel1|269400|regulator of telomere elongation helicase 1	AY481621|Rtel1|269400|regulator of telomere elongation helicase 1	AY481622|Rtel1|269400|regulator of telomere elongation helicase 1	AY481623|Rtel1|269400|regulator of telomere elongation helicase 1	BC105578|Rtel1|269400|regulator of telomere elongation helicase 1
mm9_v1_chr3_-_92819586_92819610	0.239708	CDX1,2,4.p2	BC060280|Crct1|74175|cysteine-rich C-terminal 1	AK009010|Crct1|74175|cysteine-rich C-terminal 1	NM_028798|Crct1|74175|cysteine-rich C-terminal 1
mm9_v1_chr10_+_82323313_82323353	0.239484	CDX1,2,4.p2	BC020274|Txnrd1|50493|thioredoxin reductase 1	AK177272|Txnrd1|50493|thioredoxin reductase 1	AK180432|Txnrd1|50493|thioredoxin reductase 1	AK184063|Txnrd1|50493|thioredoxin reductase 1	AK185936|Txnrd1|50493|thioredoxin reductase 1
mm9_v1_chr4_-_134909036_134909128	0.239281	CDX1,2,4.p2	BC094322|Srrm1|51796|serine/arginine repetitive matrix 1	BC079542|Srrm1|51796|serine/arginine repetitive matrix 1	AF062655|Srrm1|51796|serine/arginine repetitive matrix 1	AK008284|Srrm1|51796|serine/arginine repetitive matrix 1	AK028412|Srrm1|51796|serine/arginine repetitive matrix 1	NM_001130477|Srrm1|51796|serine/arginine repetitive matrix 1	NM_016799|Srrm1|51796|serine/arginine repetitive matrix 1
mm9_v1_chr18_+_80403593_80403727	0.238873	CDX1,2,4.p2	BC031634|Txnl4a|27366|thioredoxin-like 4A	BC014770|Txnl4a|27366|thioredoxin-like 4A	NM_001042408|Txnl4a|27366|thioredoxin-like 4A	AK011717|Txnl4a|27366|thioredoxin-like 4A
mm9_v1_chr10_+_28931448_28931510	0.237735	CDX1,2,4.p2	NM_001162537|9330159F19Rik|212448|RIKEN cDNA 9330159F19 gene	AK034141|9330159F19Rik|212448|RIKEN cDNA 9330159F19 gene	BC138279|9330159F19Rik|212448|RIKEN cDNA 9330159F19 gene	BC138282|9330159F19Rik|212448|RIKEN cDNA 9330159F19 gene
mm9_v1_chr11_-_97023157_97023169	0.237562	CDX1,2,4.p2	BC004096|Kpnb1|16211|karyopherin (importin) beta 1
mm9_v1_chr2_-_121890678_121890752	0.237526	CDX1,2,4.p2	BC019404|Spg11|214585|spastic paraplegia 11
mm9_v1_chr15_-_36538288_36538422	0.236506	CDX1,2,4.p2	BC023145|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	BC003870|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1
mm9_v1_chr11_-_100565382_100565591	0.236381	CDX1,2,4.p2	AF316999|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	BC029209|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	AK153342|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	AK021012|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	NM_030150|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58
mm9_v1_chr10_+_79755175_79755234	0.23598	CDX1,2,4.p2	NM_009091|Rps15|20054|ribosomal protein S15	M33330|Rps15|20054|ribosomal protein S15	AK146147|Rps15|20054|ribosomal protein S15	AK135319|Rps15|20054|ribosomal protein S15
mm9_v1_chr19_-_11735008_11735048	0.235839	CDX1,2,4.p2	BC099498|Plac1l|225922|placenta-specific 1-like	AK143411|Plac1l|225922|placenta-specific 1-like	NM_001037634|Plac1l|225922|placenta-specific 1-like
mm9_v1_chr6_+_123122910_123123040	0.235158	CDX1,2,4.p2	AK156711|Clec4b2|381809|C-type lectin domain family 4, member b2	AY365133|Clec4b2|381809|C-type lectin domain family 4, member b2	NM_001004159|Clec4b2|381809|C-type lectin domain family 4, member b2
mm9_v1_chr3_-_135271220_135271233	0.235024	CDX1,2,4.p2	L28117|Nfkb1|18033|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105
mm9_v1_chr9_-_85637765_85637765	0.234741	CDX1,2,4.p2	NM_001081282|Ibtk|108837|inhibitor of Bruton agammaglobulinemia tyrosine kinase
mm9_v1_chrX_+_136916509_136916509	0.234341	CDX1,2,4.p2	AK047241|Frmpd3|245643|FERM and PDZ domain containing 3	NM_177750|Frmpd3|245643|FERM and PDZ domain containing 3
mm9_v1_chr18_+_35750406_35750586	0.234228	CDX1,2,4.p2	AK139050|Matr3|17184|matrin 3	AK084822|Matr3|17184|matrin 3	AK148059|Matr3|17184|matrin 3
mm9_v1_chr5_-_144775583_144775788	0.233337	CDX1,2,4.p2	AK213761|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	BC048077|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	NM_177682|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK090008|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK171671|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK172392|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK146704|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK150793|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK152328|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK152576|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK153160|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK164888|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
mm9_v1_chr15_-_36094462_36094638	0.233204	CDX1,2,4.p2	AK030012|Fbxo43|78803|F-box protein 43	AK019714|Fbxo43|78803|F-box protein 43	BC098484|Fbxo43|78803|F-box protein 43	NM_001081253|Fbxo43|78803|F-box protein 43
mm9_v1_chr4_+_44943967_44944033	0.2324	CDX1,2,4.p2	AK013088|Zcchc7|319885|zinc finger, CCHC domain containing 7
mm9_v1_chr1_-_163748523_163748605	0.232151	CDX1,2,4.p2	AK033720|AI848100|226551|expressed sequence AI848100
mm9_v1_chr7_-_20262106_20262119	0.231644	CDX1,2,4.p2	AK146468|Apoc2|11813|apolipoprotein C-II	Z15090|Apoc2|11813|apolipoprotein C-II
mm9_v1_chr5_+_114764949_114764949	0.231615	CDX1,2,4.p2	NM_001164573|Myo1h|231646|myosin 1H
mm9_v1_chr12_-_113205152_113205166	0.231224	CDX1,2,4.p2	BC055712|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene
mm9_v1_chr4_+_143125856_143125856	0.231141	CDX1,2,4.p2	NM_001113735|Gm13057|100040861|predicted gene 13057	NM_001113736|Gm13040|100040854|predicted gene 13040
mm9_v1_chr4_+_143141602_143141602	0.231141	CDX1,2,4.p2	NM_001113735|Gm13057|100040861|predicted gene 13057	NM_001113736|Gm13040|100040854|predicted gene 13040
mm9_v1_chr18_+_35750071_35750097	0.230575	CDX1,2,4.p2	AK166063|Matr3|17184|matrin 3
mm9_v1_chr16_-_88962877_88963117	0.230089	CDX1,2,4.p2	AF345296|Krtap16-6|170655|keratin associated protein 16-6	BC107303|Krtap16-10|71369|keratin associated protein 16-10	BC107304|Krtap16-10|71369|keratin associated protein 16-10	BC119504|Krtap16-10|71369|keratin associated protein 16-10	BC127231|Krtap16-10|71369|keratin associated protein 16-10	BC127232|Krtap16-10|71369|keratin associated protein 16-10	BC132658|Krtap16-10|71369|keratin associated protein 16-10	BC132660|Krtap16-10|71369|keratin associated protein 16-10	AK017265|Krtap16-10|71369|keratin associated protein 16-10	NM_183296|Krtap16-10|71369|keratin associated protein 16-10
mm9_v1_chr7_-_118214471_118214595	0.22987	CDX1,2,4.p2	AK153701|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr9_-_88417710_88417730	0.229317	CDX1,2,4.p2	BC032970|Snhg5|72655|small nucleolar RNA host gene 5	AK012825|Snhg5|72655|small nucleolar RNA host gene 5
mm9_v1_chr12_-_42212538_42212554	0.228861	CDX1,2,4.p2	AK036316|Lrrn3|16981|leucine rich repeat protein 3, neuronal	D49802|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr7_+_24086210_24086210	0.228623	CDX1,2,4.p2	BC139319|Nlrp4e|446099|NLR family, pyrin domain containing 4E	BC139320|Nlrp4e|446099|NLR family, pyrin domain containing 4E	NM_001004194|Nlrp4e|446099|NLR family, pyrin domain containing 4E
mm9_v1_chr6_+_29809595_29809632	0.22789	CDX1,2,4.p2	NM_001171001|Ahcyl2|74340|S-adenosylhomocysteine hydrolase-like 2	AK053527|Ahcyl2|74340|S-adenosylhomocysteine hydrolase-like 2
mm9_v1_chr18_+_52625323_52625373	0.226327	CDX1,2,4.p2	AK012865|Srfbp1|67222|serum response factor binding protein 1	NM_026040|Srfbp1|67222|serum response factor binding protein 1	AK144845|Srfbp1|67222|serum response factor binding protein 1	AK141882|Srfbp1|67222|serum response factor binding protein 1	AK147692|Srfbp1|67222|serum response factor binding protein 1	BC024338|Srfbp1|67222|serum response factor binding protein 1	AY611629|Srfbp1|67222|serum response factor binding protein 1
mm9_v1_chr6_+_57354359_57354457	0.225938	CDX1,2,4.p2	BC125351|Vmn1r19|171200|vomeronasal 1 receptor 19	BC132235|Vmn1r19|171200|vomeronasal 1 receptor 19	NM_134182|Vmn1r19|171200|vomeronasal 1 receptor 19
mm9_v1_chr7_-_19751441_19751475	0.224734	CDX1,2,4.p2	AK050472|Gipr|381853|gastric inhibitory polypeptide receptor	AK146552|Gipr|381853|gastric inhibitory polypeptide receptor	NM_001080815|Gipr|381853|gastric inhibitory polypeptide receptor
mm9_v1_chr9_-_40812668_40812668	0.224469	CDX1,2,4.p2	AF001104|Crtam|54698|cytotoxic and regulatory T cell molecule	BC117715|Crtam|54698|cytotoxic and regulatory T cell molecule	BC117716|Crtam|54698|cytotoxic and regulatory T cell molecule	NM_019465|Crtam|54698|cytotoxic and regulatory T cell molecule
mm9_v1_chr10_+_82359714_82359858	0.224195	CDX1,2,4.p2	AK007891|Txnrd1|50493|thioredoxin reductase 1	AK202828|Txnrd1|50493|thioredoxin reductase 1	AK204569|Txnrd1|50493|thioredoxin reductase 1	AK217830|Txnrd1|50493|thioredoxin reductase 1	AK194198|Txnrd1|50493|thioredoxin reductase 1	AK203123|Txnrd1|50493|thioredoxin reductase 1
mm9_v1_chr11_+_103510822_103510829	0.223655	CDX1,2,4.p2	AK141598|Rprml|104582|reprimo-like	NM_001033212|Rprml|104582|reprimo-like
mm9_v1_chr13_-_93258004_93258035	0.222804	CDX1,2,4.p2	AK134948|Zfyve16|218441|zinc finger, FYVE domain containing 16
mm9_v1_chr13_+_73674194_73674271	0.222436	CDX1,2,4.p2	BC054119|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	NM_010020|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	AK032629|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	AK136885|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	U16265|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	AF109072|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3
mm9_v1_chr5_-_136450345_136450345	0.22229	CDX1,2,4.p2	NM_001160366|Srcrb4d|109267|scavenger receptor cysteine rich domain containing, group B (4 domains)
mm9_v1_chr17_-_22498323_22498380	0.222193	CDX1,2,4.p2	BC090966|Zfp944|319615|zinc finger protein 944	AK033651|Zfp944|319615|zinc finger protein 944	AK031839|Zfp944|319615|zinc finger protein 944	AK167780|Zfp944|319615|zinc finger protein 944	NM_176962|Zfp944|319615|zinc finger protein 944	AK048043|Zfp944|319615|zinc finger protein 944
mm9_v1_chr8_+_70018744_70018846	0.22144	CDX1,2,4.p2	AK007583|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)	BC012972|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)	NM_001168577|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)	AJ251710|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)	NM_010874|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)
mm9_v1_chr10_+_115580947_115580958	0.221012	CDX1,2,4.p2	Z30313|Ptprr|19279|protein tyrosine phosphatase, receptor type, R
mm9_v1_chr4_-_150422072_150422126	0.220436	CDX1,2,4.p2	
mm9_v1_chr9_+_109905895_109906037	0.21937	CDX1,2,4.p2	
mm9_v1_chr13_+_105077914_105078054	0.219008	CDX1,2,4.p2	AK030315|Adamts6|108154|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	AK044528|Adamts6|108154|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	NM_001081020|Adamts6|108154|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	BC172116|Adamts6|108154|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
mm9_v1_chrX_-_17149313_17149460	0.219002	CDX1,2,4.p2	BC012515|Fundc1|72018|FUN14 domain containing 1	AK168868|Fundc1|72018|FUN14 domain containing 1	BC030487|Fundc1|72018|FUN14 domain containing 1	AK005163|Fundc1|72018|FUN14 domain containing 1	NM_028058|Fundc1|72018|FUN14 domain containing 1
mm9_v1_chr8_-_43169732_43169732	0.218937	CDX1,2,4.p2	AF358728|Zfp353|234203|zinc finger protein 353	NM_153096|Zfp353|234203|zinc finger protein 353
mm9_v1_chr3_-_30498769_30498835	0.218307	CDX1,2,4.p2	AK007208|Arpm1|76652|actin related protein M1	AK047260|Arpm1|76652|actin related protein M1	NM_029690|Arpm1|76652|actin related protein M1	BC107277|Arpm1|76652|actin related protein M1	BC107278|Arpm1|76652|actin related protein M1
mm9_v1_chr10_+_79283765_79283787	0.218203	CDX1,2,4.p2	AK020266|9130017N09Rik|78906|RIKEN cDNA 9130017N09 gene	NM_030218|9130017N09Rik|78906|RIKEN cDNA 9130017N09 gene	BC013508|9130017N09Rik|78906|RIKEN cDNA 9130017N09 gene
mm9_v1_chr2_+_122012007_122012007	0.21794	CDX1,2,4.p2	AK016695|4933406J08Rik|74401|RIKEN cDNA 4933406J08 gene	NM_028914|4933406J08Rik|74401|RIKEN cDNA 4933406J08 gene
mm9_v1_chr12_+_38607291_38607482	0.217812	CDX1,2,4.p2	AK139408|Dgkb|217480|diacylglycerol kinase, beta	NM_178681|Dgkb|217480|diacylglycerol kinase, beta	AK083222|Dgkb|217480|diacylglycerol kinase, beta	AK047682|Dgkb|217480|diacylglycerol kinase, beta	AK044516|Dgkb|217480|diacylglycerol kinase, beta
mm9_v1_chr11_-_102178559_102178600	0.217503	CDX1,2,4.p2	AK158861|Ubtf|21429|upstream binding transcription factor, RNA polymerase I	NM_001044383|Ubtf|21429|upstream binding transcription factor, RNA polymerase I
mm9_v1_chr9_-_42208011_42208011	0.217269	CDX1,2,4.p2	NM_009347|Tecta|21683|tectorin alpha	X99805|Tecta|21683|tectorin alpha
mm9_v1_chr6_+_129543505_129543505	0.216856	CDX1,2,4.p2	AF030311|Klrd1|16643|killer cell lectin-like receptor, subfamily D, member 1	AF057714|Klrd1|16643|killer cell lectin-like receptor, subfamily D, member 1	NM_010654|Klrd1|16643|killer cell lectin-like receptor, subfamily D, member 1
mm9_v1_chr9_-_98502063_98502097	0.215168	CDX1,2,4.p2	BC037653|Mrps22|64655|mitochondrial ribosomal protein S22	BC051198|Mrps22|64655|mitochondrial ribosomal protein S22	AK013925|Mrps22|64655|mitochondrial ribosomal protein S22	AK154600|Mrps22|64655|mitochondrial ribosomal protein S22	NM_025485|Mrps22|64655|mitochondrial ribosomal protein S22
mm9_v1_chr16_-_92359659_92359712	0.214776	CDX1,2,4.p2	BC094276|Kcne1|16509|potassium voltage-gated channel, Isk-related subfamily, member 1	AK008938|Kcne1|16509|potassium voltage-gated channel, Isk-related subfamily, member 1	AK028907|Kcne1|16509|potassium voltage-gated channel, Isk-related subfamily, member 1	NM_008424|Kcne1|16509|potassium voltage-gated channel, Isk-related subfamily, member 1
mm9_v1_chr17_+_47506145_47506145	0.214537	CDX1,2,4.p2	BC048912|Mrps10|64657|mitochondrial ribosomal protein S10	NM_183086|Mrps10|64657|mitochondrial ribosomal protein S10
mm9_v1_chr7_-_31017047_31017047	0.213549	CDX1,2,4.p2	NM_025548|Tbcb|66411|tubulin folding cofactor B
mm9_v1_chr17_-_33855557_33855658	0.213291	CDX1,2,4.p2	BC002144|March2|224703|membrane-associated ring finger (C3HC4) 2	AK053434|March2|224703|membrane-associated ring finger (C3HC4) 2	AK079234|March2|224703|membrane-associated ring finger (C3HC4) 2	AK081495|March2|224703|membrane-associated ring finger (C3HC4) 2	AK036614|March2|224703|membrane-associated ring finger (C3HC4) 2	AK039778|March2|224703|membrane-associated ring finger (C3HC4) 2	AK040163|March2|224703|membrane-associated ring finger (C3HC4) 2	NM_145486|March2|224703|membrane-associated ring finger (C3HC4) 2
mm9_v1_chr3_-_96531361_96531401	0.213084	CDX1,2,4.p2	BC147485|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	BC151028|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	NM_028925|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	BC026793|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	AK217858|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	AK016716|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	AK140296|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	AK043194|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C
mm9_v1_chr7_-_29123724_29123770	0.212538	CDX1,2,4.p2	AK146583|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	AK145465|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	BC007132|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	NM_013676|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	U88539|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	BC057449|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	AK146055|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	AK146453|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	AK159786|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	AK145117|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)
mm9_v1_chr6_-_128388502_128388671	0.212483	CDX1,2,4.p2	AK212190|Fkbp4|14228|FK506 binding protein 4	X17069|Fkbp4|14228|FK506 binding protein 4	X70887|Fkbp4|14228|FK506 binding protein 4	AK160202|Fkbp4|14228|FK506 binding protein 4	AK083912|Fkbp4|14228|FK506 binding protein 4	NM_010219|Fkbp4|14228|FK506 binding protein 4	AK089972|Fkbp4|14228|FK506 binding protein 4	BC003447|Fkbp4|14228|FK506 binding protein 4
mm9_v1_chr17_-_22099417_22099430	0.212467	CDX1,2,4.p2	BC096765|Zfp942|73233|zinc finger protein 942	AK032425|Zfp942|73233|zinc finger protein 942	NM_001199048|Zfp942|73233|zinc finger protein 942
mm9_v1_chr13_-_38085986_38086062	0.212455	CDX1,2,4.p2	BC011255|Ssr1|107513|signal sequence receptor, alpha	AK010884|Ssr1|107513|signal sequence receptor, alpha	AK167793|Ssr1|107513|signal sequence receptor, alpha	AK160285|Ssr1|107513|signal sequence receptor, alpha	AF326229|Ssr1|107513|signal sequence receptor, alpha	AF395811|Ssr1|107513|signal sequence receptor, alpha	AY993942|Ssr1|107513|signal sequence receptor, alpha	AK166235|Ssr1|107513|signal sequence receptor, alpha	AK031538|Ssr1|107513|signal sequence receptor, alpha	AB009295|Ssr1|107513|signal sequence receptor, alpha	NM_025965|Ssr1|107513|signal sequence receptor, alpha
mm9_v1_chr11_-_106642357_106642481	0.212429	CDX1,2,4.p2	AK011169|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chrX_+_4446526_4446526	0.211803	CDX1,2,4.p2	NM_001099643|Gm3750|100042254|predicted gene 3750
mm9_v1_chr6_-_83522410_83522497	0.211387	CDX1,2,4.p2	AK136961|Stambp|70527|STAM binding protein	AK220541|Stambp|70527|STAM binding protein	BC006939|Stambp|70527|STAM binding protein	BC003497|Stambp|70527|STAM binding protein	BC025111|Stambp|70527|STAM binding protein	AB010123|Stambp|70527|STAM binding protein	AK019907|Stambp|70527|STAM binding protein	AK046995|Stambp|70527|STAM binding protein	AK017600|Stambp|70527|STAM binding protein	AK168810|Stambp|70527|STAM binding protein	AK139391|Stambp|70527|STAM binding protein	NM_024239|Stambp|70527|STAM binding protein
mm9_v1_chr7_-_31011907_31012028	0.211228	CDX1,2,4.p2	AK214432|Tbcb|66411|tubulin folding cofactor B
mm9_v1_chr1_+_100317700_100317730	0.210991	CDX1,2,4.p2	AK014872|Slco6d1|70866|solute carrier organic anion transporter family, member 6d1	NM_001164233|Slco6d1|70866|solute carrier organic anion transporter family, member 6d1	NM_027584|Slco6d1|70866|solute carrier organic anion transporter family, member 6d1	AK133206|Slco6d1|70866|solute carrier organic anion transporter family, member 6d1	BC112423|Slco6d1|70866|solute carrier organic anion transporter family, member 6d1	BC113131|Slco6d1|70866|solute carrier organic anion transporter family, member 6d1
mm9_v1_chr17_-_29052264_29052268	0.210989	CDX1,2,4.p2	BC117930|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene	AK033585|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene	NM_172450|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene
mm9_v1_chr17_+_34781733_34781827	0.21065	CDX1,2,4.p2	AK146018|Fkbpl|56299|FK506 binding protein-like	BC046338|Fkbpl|56299|FK506 binding protein-like	NM_019873|Fkbpl|56299|FK506 binding protein-like
mm9_v1_chr8_+_19225477_19225477	0.210153	CDX1,2,4.p2	AB063109|Defb6|116746|defensin beta 6	BC119422|Defb6|116746|defensin beta 6	BC119423|Defb6|116746|defensin beta 6	BC141871|Defb6|116746|defensin beta 6	BC141872|Defb6|116746|defensin beta 6	NM_054074|Defb6|116746|defensin beta 6
mm9_v1_chr2_-_154196611_154196692	0.209923	CDX1,2,4.p2	BC025132|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1
mm9_v1_chr19_-_33664731_33664800	0.20873	CDX1,2,4.p2	AK170332|Lipo1|381236|lipase, member O1	AK139790|Lipo1|381236|lipase, member O1	NM_001013770|Lipo1|381236|lipase, member O1
mm9_v1_chrX_+_12869324_12869430	0.207884	CDX1,2,4.p2	AK211517|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
mm9_v1_chr3_+_145600974_145601015	0.20754	CDX1,2,4.p2	BC049577|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK010378|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	BC115465|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	NM_025555|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK019404|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK077565|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene
mm9_v1_chr15_-_63676716_63676730	0.207151	CDX1,2,4.p2	BC113155|Gsdmc2|331063|gasdermin C2	AK033603|Gsdmc2|331063|gasdermin C2	NM_001168274|Gsdmc2|331063|gasdermin C2	NM_177912|Gsdmc2|331063|gasdermin C2
mm9_v1_chr15_+_102300972_102301062	0.204758	CDX1,2,4.p2	NM_001103165|Pcbp2|18521|poly(rC) binding protein 2	NM_001103166|Pcbp2|18521|poly(rC) binding protein 2	NM_001174073|Pcbp2|18521|poly(rC) binding protein 2	NM_011042|Pcbp2|18521|poly(rC) binding protein 2
mm9_v1_chr14_-_109313333_109313374	0.204069	CDX1,2,4.p2	AK173296|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chrX_-_86655017_86655027	0.201916	CDX1,2,4.p2	M95564|Pet2|18630|plasmacytoma expressed transcript 2	NM_008821|Pet2|18630|plasmacytoma expressed transcript 2
mm9_v1_chr2_+_91050920_91051054	0.201892	CDX1,2,4.p2	AK080581|Acp2|11432|acid phosphatase 2, lysosomal
mm9_v1_chr6_-_52190771_52190869	0.201319	CDX1,2,4.p2	L08758|Hoxa10|15395|homeobox A10	NM_001122950|Hoxa10|15395|homeobox A10
mm9_v1_chr2_+_11564418_11564614	0.200812	CDX1,2,4.p2	NM_008367|Il2ra|16184|interleukin 2 receptor, alpha chain	AK037369|Il2ra|16184|interleukin 2 receptor, alpha chain	AK041350|Il2ra|16184|interleukin 2 receptor, alpha chain	AK088594|Il2ra|16184|interleukin 2 receptor, alpha chain	AK168113|Il2ra|16184|interleukin 2 receptor, alpha chain	AK171665|Il2ra|16184|interleukin 2 receptor, alpha chain	M30856|Il2ra|16184|interleukin 2 receptor, alpha chain	BC114437|Il2ra|16184|interleukin 2 receptor, alpha chain	K02891|Il2ra|16184|interleukin 2 receptor, alpha chain	M54934|Il2ra|16184|interleukin 2 receptor, alpha chain
mm9_v1_chr12_-_85559793_85559836	0.200558	CDX1,2,4.p2	AK155768|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	NM_001163501|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene
mm9_v1_chr2_+_180721239_180721360	0.200472	CDX1,2,4.p2	NM_028518|Col20a1|73368|collagen, type XX, alpha 1
mm9_v1_chr6_-_37996978_37996995	0.200421	CDX1,2,4.p2	BC058741|Svopl|320590|SV2 related protein homolog (rat)-like	AK034997|Svopl|320590|SV2 related protein homolog (rat)-like	AK137043|Svopl|320590|SV2 related protein homolog (rat)-like	NM_177200|Svopl|320590|SV2 related protein homolog (rat)-like
mm9_v1_chr11_+_22902903_22902903	0.199977	CDX1,2,4.p2	AK194972|Cct4|12464|chaperonin containing Tcp1, subunit 4 (delta)
mm9_v1_chr9_+_20016650_20016744	0.199548	CDX1,2,4.p2	NM_146903|Olfr871|258905|olfactory receptor 871	BC119201|Olfr871|258905|olfactory receptor 871	BC119203|Olfr871|258905|olfactory receptor 871
mm9_v1_chr4_+_45696460_45696460	0.199367	CDX1,2,4.p2	AK147771|Gm829|329839|predicted gene 829	NM_001033412|Gm829|329839|predicted gene 829
mm9_v1_chr15_+_97998090_97998244	0.199261	CDX1,2,4.p2	AK080988|AI836003|239650|expressed sequence AI836003	NM_177716|AI836003|239650|expressed sequence AI836003
mm9_v1_chrX_-_76916773_76916773	0.198212	CDX1,2,4.p2	AK010362|Mageb16|71967|melanoma antigen family B, 16	NM_028025|Mageb16|71967|melanoma antigen family B, 16
mm9_v1_chr9_+_56919839_56919849	0.197791	CDX1,2,4.p2	NM_001110351|Sin3a|20466|transcriptional regulator, SIN3A (yeast)
mm9_v1_chr9_-_63225646_63225720	0.196931	CDX1,2,4.p2	BC013697|Map2k5|23938|mitogen-activated protein kinase kinase 5	AB019374|Map2k5|23938|mitogen-activated protein kinase kinase 5	NM_011840|Map2k5|23938|mitogen-activated protein kinase kinase 5	AK020716|Map2k5|23938|mitogen-activated protein kinase kinase 5	AK159261|Map2k5|23938|mitogen-activated protein kinase kinase 5	AK166137|Map2k5|23938|mitogen-activated protein kinase kinase 5
mm9_v1_chr10_+_60938535_60938600	0.196573	CDX1,2,4.p2	AK139384|Lrrc20|216011|leucine rich repeat containing 20	AK136380|Lrrc20|216011|leucine rich repeat containing 20	AK145920|Lrrc20|216011|leucine rich repeat containing 20	AK150142|Lrrc20|216011|leucine rich repeat containing 20	BC036304|Lrrc20|216011|leucine rich repeat containing 20	NM_153542|Lrrc20|216011|leucine rich repeat containing 20	AK150246|Lrrc20|216011|leucine rich repeat containing 20
mm9_v1_chr12_+_4082573_4082658	0.196244	CDX1,2,4.p2	NM_153082|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	BC051140|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	AK049300|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	BC042643|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27
mm9_v1_chr10_-_90586724_90586787	0.195045	CDX1,2,4.p2	AK150870|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK168129|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK077723|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK028313|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
mm9_v1_chr12_+_56499902_56499913	0.194329	CDX1,2,4.p2	AF060087|Psma6|26443|proteasome (prosome, macropain) subunit, alpha type 6
mm9_v1_chr1_-_132526172_132526182	0.194049	CDX1,2,4.p2	BC119121|Zp3r|22789|zona pellucida 3 receptor	BC119123|Zp3r|22789|zona pellucida 3 receptor	U17108|Zp3r|22789|zona pellucida 3 receptor	NM_009581|Zp3r|22789|zona pellucida 3 receptor
mm9_v1_chr5_+_32761332_32761346	0.193457	CDX1,2,4.p2	NM_172707|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK166416|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chrX_+_106290703_106290922	0.193427	CDX1,2,4.p2	BC043055|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	NM_019989|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK218315|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	BC034161|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK151871|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK165995|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK146588|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK150604|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK151095|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK049929|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK151501|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AJ272504|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like
mm9_v1_chr7_-_125259660_125259706	0.192534	CDX1,2,4.p2	BC051205|Rps15a|267019|ribosomal protein S15A	BC054792|Rps15a|267019|ribosomal protein S15A	NM_170669|Rps15a|267019|ribosomal protein S15A	BC076563|Rps15a|267019|ribosomal protein S15A	AK152932|Rps15a|267019|ribosomal protein S15A	AK008350|Rps15a|267019|ribosomal protein S15A	AK012485|Rps15a|267019|ribosomal protein S15A	AK011514|Rps15a|267019|ribosomal protein S15A	AK012618|Rps15a|267019|ribosomal protein S15A	AK019235|Rps15a|267019|ribosomal protein S15A	AK028135|Rps15a|267019|ribosomal protein S15A	BC086885|Rps15a|267019|ribosomal protein S15A	BC087867|Rps15a|267019|ribosomal protein S15A	AK032522|Rps15a|267019|ribosomal protein S15A	AK010652|Rps15a|267019|ribosomal protein S15A
mm9_v1_chr5_-_115636064_115636129	0.192487	CDX1,2,4.p2	AB079604|Cabp1|29867|calcium binding protein 1	AF169152|Cabp1|29867|calcium binding protein 1	AF169153|Cabp1|29867|calcium binding protein 1	NM_013879|Cabp1|29867|calcium binding protein 1
mm9_v1_chr4_+_143101214_143101245	0.191872	CDX1,2,4.p2	NM_001113735|Gm13057|100040861|predicted gene 13057	NM_001113736|Gm13040|100040854|predicted gene 13040	BC099534|Gm13043|545693|predicted gene 13043	NM_001039595|Gm13043|545693|predicted gene 13043
mm9_v1_chr12_-_113205172_113205207	0.191579	CDX1,2,4.p2	BC059719|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene	AK008333|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene	NM_027360|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene
mm9_v1_chr5_-_93611701_93611836	0.191494	CDX1,2,4.p2	
mm9_v1_chr10_+_21698470_21698479	0.191005	CDX1,2,4.p2	NM_001161847|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr4_-_133101802_133101911	0.190695	CDX1,2,4.p2	Y15522|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	X81443|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	BC011253|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK012777|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK032673|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK012321|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK146323|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)
mm9_v1_chr17_-_45736533_45736548	0.190311	CDX1,2,4.p2	AK050089|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1
mm9_v1_chr1_+_58852303_58852383	0.189849	CDX1,2,4.p2	AF067834|Casp8|12370|caspase 8	BC049955|Casp8|12370|caspase 8
mm9_v1_chr2_-_66278870_66278908	0.189247	CDX1,2,4.p2	AK046001|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	AK134744|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	NM_018733|Scn1a|20265|sodium channel, voltage-gated, type I, alpha
mm9_v1_chr10_-_62255007_62255115	0.189131	CDX1,2,4.p2	BC034174|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC051052|Ccar1|67500|cell division cycle and apoptosis regulator 1	NM_026201|Ccar1|67500|cell division cycle and apoptosis regulator 1
mm9_v1_chr5_+_136470670_136470775	0.189034	CDX1,2,4.p2	AK012137|Dtx2|74198|deltex 2 homolog (Drosophila)	AK054443|Dtx2|74198|deltex 2 homolog (Drosophila)	AK044105|Dtx2|74198|deltex 2 homolog (Drosophila)	BC024925|Dtx2|74198|deltex 2 homolog (Drosophila)	AB015423|Dtx2|74198|deltex 2 homolog (Drosophila)	AB015424|Dtx2|74198|deltex 2 homolog (Drosophila)	NM_023742|Dtx2|74198|deltex 2 homolog (Drosophila)
mm9_v1_chr14_+_49686169_49686492	0.188935	CDX1,2,4.p2	BC023094|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	NM_144535|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK028927|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK041400|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK154166|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK016540|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK051372|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK036465|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK030928|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK036454|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK042544|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK170232|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK164148|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK211895|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing
mm9_v1_chr18_+_23910833_23910892	0.188663	CDX1,2,4.p2	AK158570|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	NM_001162942|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK168834|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr1_+_16678536_16678588	0.188587	CDX1,2,4.p2	AB018550|Ly96|17087|lymphocyte antigen 96	NM_001159711|Ly96|17087|lymphocyte antigen 96	NM_016923|Ly96|17087|lymphocyte antigen 96	BC116785|Ly96|17087|lymphocyte antigen 96	AF168120|Ly96|17087|lymphocyte antigen 96	AY641431|Ly96|17087|lymphocyte antigen 96
mm9_v1_chr17_+_33766035_33766080	0.188581	CDX1,2,4.p2	NM_026712|Zfp414|328801|zinc finger protein 414	AK048362|Zfp414|328801|zinc finger protein 414	AK169869|Zfp414|328801|zinc finger protein 414	AK002706|Zfp414|328801|zinc finger protein 414	BC116933|Zfp414|328801|zinc finger protein 414	BC119044|Zfp414|328801|zinc finger protein 414	BC038913|Zfp414|328801|zinc finger protein 414
mm9_v1_chr17_+_56909672_56909698	0.18838	CDX1,2,4.p2	NM_001195673|Prr22|224908|proline rich 22
mm9_v1_chr18_-_78006524_78006535	0.188192	CDX1,2,4.p2	AK147599|Haus1|225745|HAUS augmin-like complex, subunit 1
mm9_v1_chr6_-_5248335_5248416	0.187029	CDX1,2,4.p2	AK146311|Pon2|330260|paraoxonase 2	AK007350|Pon2|330260|paraoxonase 2	BC062200|Pon2|330260|paraoxonase 2	BC055896|Pon2|330260|paraoxonase 2	NM_183308|Pon2|330260|paraoxonase 2
mm9_v1_chr2_-_106814482_106814618	0.186922	CDX1,2,4.p2	BC054106|2700007P21Rik|212772|RIKEN cDNA 2700007P21 gene	AK038273|2700007P21Rik|212772|RIKEN cDNA 2700007P21 gene	AK134965|2700007P21Rik|212772|RIKEN cDNA 2700007P21 gene	AK165082|2700007P21Rik|212772|RIKEN cDNA 2700007P21 gene	AK012215|2700007P21Rik|212772|RIKEN cDNA 2700007P21 gene	NM_001025102|2700007P21Rik|212772|RIKEN cDNA 2700007P21 gene
mm9_v1_chr15_+_66409094_66409201	0.186912	CDX1,2,4.p2	AK047044|Phf20l1|239510|PHD finger protein 20-like 1	AK032638|Phf20l1|239510|PHD finger protein 20-like 1	NM_001081409|Phf20l1|239510|PHD finger protein 20-like 1	BC082777|Phf20l1|239510|PHD finger protein 20-like 1	BC052212|Phf20l1|239510|PHD finger protein 20-like 1	BC061492|Phf20l1|239510|PHD finger protein 20-like 1
mm9_v1_chr13_+_27893522_27893571	0.186523	CDX1,2,4.p2	AB032428|Prl2a1|56635|prolactin family 2, subfamily a, member 1	AF234636|Prl2a1|56635|prolactin family 2, subfamily a, member 1	NM_019991|Prl2a1|56635|prolactin family 2, subfamily a, member 1	BC099458|Prl2a1|56635|prolactin family 2, subfamily a, member 1	AK005424|Prl2a1|56635|prolactin family 2, subfamily a, member 1	AF226610|Prl2a1|56635|prolactin family 2, subfamily a, member 1	AF272368|Prl2a1|56635|prolactin family 2, subfamily a, member 1
mm9_v1_chr6_-_40949477_40949477	0.185468	CDX1,2,4.p2	NM_001102660|Gm2663|100040208|predicted gene 2663
mm9_v1_chr19_+_42245102_42245124	0.185405	CDX1,2,4.p2	BC042595|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr17_+_66460934_66461036	0.185112	CDX1,2,4.p2	AK159820|ORF19|68767|open reading frame 19	AK171737|ORF19|68767|open reading frame 19	AK172673|ORF19|68767|open reading frame 19	AJ304796|ORF19|68767|open reading frame 19	AK149967|ORF19|68767|open reading frame 19	BC025839|ORF19|68767|open reading frame 19	NM_001037757|ORF19|68767|open reading frame 19	AK154400|ORF19|68767|open reading frame 19	AK033616|ORF19|68767|open reading frame 19
mm9_v1_chr6_+_89046108_89046173	0.185071	CDX1,2,4.p2	BC098480|4933427D06Rik|232217|RIKEN cDNA 4933427D06 gene	NM_175017|4933427D06Rik|232217|RIKEN cDNA 4933427D06 gene	AK030235|4933427D06Rik|232217|RIKEN cDNA 4933427D06 gene
mm9_v1_chr13_-_102453449_102453477	0.185055	CDX1,2,4.p2	AK138868|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	AK049798|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chrX_-_34650263_34650340	0.182936	CDX1,2,4.p2	AK019989|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC058761|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK162222|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK011606|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK145431|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	NM_026573|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC117769|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC117770|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)
mm9_v1_chr12_-_82695968_82696003	0.182914	CDX1,2,4.p2	AK005232|Med6|69792|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast)	AK089101|Med6|69792|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast)
mm9_v1_chr16_+_65520846_65520963	0.182672	CDX1,2,4.p2	BC061213|Pou1f1|18736|POU domain, class 1, transcription factor 1	D12885|Pou1f1|18736|POU domain, class 1, transcription factor 1	NM_008849|Pou1f1|18736|POU domain, class 1, transcription factor 1	X57512|Pou1f1|18736|POU domain, class 1, transcription factor 1
mm9_v1_chr3_-_101640128_101640145	0.182632	CDX1,2,4.p2	NM_172295|Mab21l3|242125|mab-21-like 3 (C. elegans)
mm9_v1_chr4_+_101659444_101659444	0.182532	CDX1,2,4.p2	NM_001085520|Gm12789|381536|predicted gene 12789
mm9_v1_chr7_+_109214226_109214271	0.182511	CDX1,2,4.p2	AK040538|Trpc2|22064|transient receptor potential cation channel, subfamily C, member 2	NM_011644|Trpc2|22064|transient receptor potential cation channel, subfamily C, member 2	AK013894|Trpc2|22064|transient receptor potential cation channel, subfamily C, member 2	AK041300|Trpc2|22064|transient receptor potential cation channel, subfamily C, member 2
mm9_v1_chr5_+_91456489_91456542	0.182166	CDX1,2,4.p2	BC119291|Epgn|71920|epithelial mitogen	BC119293|Epgn|71920|epithelial mitogen	BC145041|Epgn|71920|epithelial mitogen	AJ291391|Epgn|71920|epithelial mitogen	NM_053087|Epgn|71920|epithelial mitogen
mm9_v1_chr11_-_86509102_86509123	0.181954	CDX1,2,4.p2	AK018633|Cltc|67300|clathrin, heavy polypeptide (Hc)
mm9_v1_chr14_-_56300568_56300659	0.181824	CDX1,2,4.p2	BC030347|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	AK144592|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	AK016456|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	AF518764|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	AK090324|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	AK028952|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	AK011154|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	BC017142|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	AF214013|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	NM_145705|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2
mm9_v1_chr11_+_117693543_117693586	0.181647	CDX1,2,4.p2	AK018563|Afmid|71562|arylformamidase
mm9_v1_chr7_-_127813763_127813856	0.181324	CDX1,2,4.p2	AK006727|Pdzd9|67983|PDZ domain containing 9	AK015115|Pdzd9|67983|PDZ domain containing 9	AK015578|Pdzd9|67983|PDZ domain containing 9	AK017019|Pdzd9|67983|PDZ domain containing 9	NM_001040137|Pdzd9|67983|PDZ domain containing 9	BC147551|Pdzd9|67983|PDZ domain containing 9	BC147563|Pdzd9|67983|PDZ domain containing 9	BC172089|Pdzd9|67983|PDZ domain containing 9	AK005921|Pdzd9|67983|PDZ domain containing 9	NM_001040136|Pdzd9|67983|PDZ domain containing 9
mm9_v1_chr10_+_120471059_120471111	0.180624	CDX1,2,4.p2	AK077698|Wif1|24117|Wnt inhibitory factor 1	AK142443|Wif1|24117|Wnt inhibitory factor 1	AK158359|Wif1|24117|Wnt inhibitory factor 1	NM_011915|Wif1|24117|Wnt inhibitory factor 1
mm9_v1_chr7_-_134550257_134550335	0.180451	CDX1,2,4.p2	BC026397|Zfp764|233893|zinc finger protein 764	AK053795|Zfp764|233893|zinc finger protein 764	AK033218|Zfp764|233893|zinc finger protein 764	AK042873|Zfp764|233893|zinc finger protein 764	NM_001167832|Zfp764|233893|zinc finger protein 764	NM_146203|Zfp764|233893|zinc finger protein 764
mm9_v1_chr9_-_99776467_99776588	0.180362	CDX1,2,4.p2	BC069948|Sox14|20669|SRY-box containing gene 14	AK138208|Sox14|20669|SRY-box containing gene 14	BC055767|Sox14|20669|SRY-box containing gene 14	BC083360|Sox14|20669|SRY-box containing gene 14	BC100555|Sox14|20669|SRY-box containing gene 14	NM_011440|Sox14|20669|SRY-box containing gene 14
mm9_v1_chr7_-_115210309_115210309	0.180218	CDX1,2,4.p2	NM_020291|Olfr480|56861|olfactory receptor 480
mm9_v1_chr7_+_28623602_28623625	0.179908	CDX1,2,4.p2	NM_011762|Zfp59|22717|zinc finger protein 59	AK142951|Zfp59|22717|zinc finger protein 59
mm9_v1_chr1_+_40572206_40572292	0.179195	CDX1,2,4.p2	AF077347|Il18rap|16174|interleukin 18 receptor accessory protein	BC120598|Il18rap|16174|interleukin 18 receptor accessory protein	BC120600|Il18rap|16174|interleukin 18 receptor accessory protein	NM_010553|Il18rap|16174|interleukin 18 receptor accessory protein	AK137541|Il18rap|16174|interleukin 18 receptor accessory protein	AK053176|Il18rap|16174|interleukin 18 receptor accessory protein
mm9_v1_chr10_-_122633922_122634056	0.179124	CDX1,2,4.p2	L10903|Usp15|14479|ubiquitin specific peptidase 15	AF468037|Usp15|14479|ubiquitin specific peptidase 15	AK145749|Usp15|14479|ubiquitin specific peptidase 15	NM_027604|Usp15|14479|ubiquitin specific peptidase 15	AK046332|Usp15|14479|ubiquitin specific peptidase 15	AK083303|Usp15|14479|ubiquitin specific peptidase 15	AK133852|Usp15|14479|ubiquitin specific peptidase 15	AK122301|Usp15|14479|ubiquitin specific peptidase 15	BC050042|Usp15|14479|ubiquitin specific peptidase 15	AK164382|Usp15|14479|ubiquitin specific peptidase 15	AK163315|Usp15|14479|ubiquitin specific peptidase 15	AK168755|Usp15|14479|ubiquitin specific peptidase 15	AK161469|Usp15|14479|ubiquitin specific peptidase 15	AK161957|Usp15|14479|ubiquitin specific peptidase 15	AK163284|Usp15|14479|ubiquitin specific peptidase 15
mm9_v1_chr18_-_20160536_20160597	0.178714	CDX1,2,4.p2	BC144845|Dsc3|13507|desmocollin 3	NM_007882|Dsc3|13507|desmocollin 3	Y11169|Dsc3|13507|desmocollin 3
mm9_v1_chr2_+_127680363_127680363	0.178632	CDX1,2,4.p2	AK004775|Acoxl|74121|acyl-Coenzyme A oxidase-like	NM_028765|Acoxl|74121|acyl-Coenzyme A oxidase-like
mm9_v1_chr8_+_112741857_112741896	0.178603	CDX1,2,4.p2	NM_146215|Ftsjd1|234728|FtsJ methyltransferase domain containing 1	AK158368|Ftsjd1|234728|FtsJ methyltransferase domain containing 1	AK032855|Ftsjd1|234728|FtsJ methyltransferase domain containing 1	AK050315|Ftsjd1|234728|FtsJ methyltransferase domain containing 1	BC025546|Ftsjd1|234728|FtsJ methyltransferase domain containing 1
mm9_v1_chr1_+_83156336_83156343	0.178167	CDX1,2,4.p2	AK016977|Wdr69|71227|WD repeat domain 69	BC049704|Wdr69|71227|WD repeat domain 69	BC144994|Wdr69|71227|WD repeat domain 69	BC145995|Wdr69|71227|WD repeat domain 69	NM_027725|Wdr69|71227|WD repeat domain 69	AK016201|Wdr69|71227|WD repeat domain 69
mm9_v1_chr8_+_35178083_35178147	0.177755	CDX1,2,4.p2	EU721729|Mboat4|234155|membrane bound O-acyltransferase domain containing 4	NM_001126314|Mboat4|234155|membrane bound O-acyltransferase domain containing 4	BC147844|Mboat4|234155|membrane bound O-acyltransferase domain containing 4	BC147849|Mboat4|234155|membrane bound O-acyltransferase domain containing 4	EU518496|Mboat4|234155|membrane bound O-acyltransferase domain containing 4
mm9_v1_chr6_+_77192839_77192971	0.177004	CDX1,2,4.p2	BC027803|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1
mm9_v1_chr14_-_53115369_53115369	0.176924	CDX1,2,4.p2	NM_001170918|Olfr1507|57269|olfactory receptor 1507
mm9_v1_chr15_-_89307854_89307854	0.175159	CDX1,2,4.p2	BC098075|Arsa|11883|arylsulfatase A	NM_009713|Arsa|11883|arylsulfatase A
mm9_v1_chr4_-_43023359_43023400	0.175156	CDX1,2,4.p2	BC050890|Fancg|60534|Fanconi anemia, complementation group G
mm9_v1_chr13_-_13097596_13097637	0.174768	CDX1,2,4.p2	K02245|Prl2c2|18811|prolactin family 2, subfamily c, member 2	NM_031191|Prl2c2|18811|prolactin family 2, subfamily c, member 2	X75557|Prl2c2|18811|prolactin family 2, subfamily c, member 2	BC145439|Prl2c2|18811|prolactin family 2, subfamily c, member 2	BC100300|Prl2c2|18811|prolactin family 2, subfamily c, member 2	BC056203|Prl2c2|18811|prolactin family 2, subfamily c, member 2
mm9_v1_chr1_-_134439500_134439516	0.174729	CDX1,2,4.p2	AK147602|Cntn2|21367|contactin 2	NM_177129|Cntn2|21367|contactin 2
mm9_v1_chr8_+_108225509_108225588	0.174724	CDX1,2,4.p2	BC061114|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	AK158848|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	NM_001047435|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	NM_019695|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	BC049593|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	AK003030|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)
mm9_v1_chr1_-_134921914_134921968	0.17455	CDX1,2,4.p2	AK028493|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AK161882|Mdm4|17248|transformed mouse 3T3 cell double minute 4	EU568360|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AK083349|Mdm4|17248|transformed mouse 3T3 cell double minute 4	NM_008575|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AK049576|Mdm4|17248|transformed mouse 3T3 cell double minute 4	BC003750|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AK049690|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AK017719|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AF007110|Mdm4|17248|transformed mouse 3T3 cell double minute 4
mm9_v1_chr3_-_57455592_57455609	0.174223	CDX1,2,4.p2	BC062098|Commd2|52245|COMM domain containing 2	BC100390|Commd2|52245|COMM domain containing 2	BC080774|Commd2|52245|COMM domain containing 2	BC119316|Commd2|52245|COMM domain containing 2	BC119318|Commd2|52245|COMM domain containing 2	AK143821|Commd2|52245|COMM domain containing 2	NM_175095|Commd2|52245|COMM domain containing 2
mm9_v1_chr4_-_109203808_109203901	0.174201	CDX1,2,4.p2	AK005726|4930522H14Rik|67646|RIKEN cDNA 4930522H14 gene	AK015869|4930522H14Rik|67646|RIKEN cDNA 4930522H14 gene	BC125547|4930522H14Rik|67646|RIKEN cDNA 4930522H14 gene	BC125549|4930522H14Rik|67646|RIKEN cDNA 4930522H14 gene	AK019777|4930522H14Rik|67646|RIKEN cDNA 4930522H14 gene	NM_026291|4930522H14Rik|67646|RIKEN cDNA 4930522H14 gene
mm9_v1_chr3_+_94641626_94641643	0.17357	CDX1,2,4.p2	BC085188|Pogz|229584|pogo transposable element with ZNF domain	AK035255|Pogz|229584|pogo transposable element with ZNF domain	AK086062|Pogz|229584|pogo transposable element with ZNF domain	AK161889|Pogz|229584|pogo transposable element with ZNF domain	BC139432|Pogz|229584|pogo transposable element with ZNF domain	BC139433|Pogz|229584|pogo transposable element with ZNF domain
mm9_v1_chr14_-_78488780_78488813	0.172778	CDX1,2,4.p2	BC120488|AU021034|219170|expressed sequence AU021034	BC120490|AU021034|219170|expressed sequence AU021034	AK047611|AU021034|219170|expressed sequence AU021034	AK034132|AU021034|219170|expressed sequence AU021034	NM_177629|AU021034|219170|expressed sequence AU021034
mm9_v1_chr11_-_54965186_54965209	0.172285	CDX1,2,4.p2	AY211261|Slc36a3|215332|solute carrier family 36 (proton/amino acid symporter), member 3	AK132910|Slc36a3|215332|solute carrier family 36 (proton/amino acid symporter), member 3	AF453745|Slc36a3|215332|solute carrier family 36 (proton/amino acid symporter), member 3	NM_172258|Slc36a3|215332|solute carrier family 36 (proton/amino acid symporter), member 3	BC049682|Slc36a3|215332|solute carrier family 36 (proton/amino acid symporter), member 3
mm9_v1_chr12_+_101122706_101122828	0.171971	CDX1,2,4.p2	NM_028354|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK033868|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK014855|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK088990|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK137004|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK079006|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1
mm9_v1_chrX_-_12250659_12250764	0.171971	CDX1,2,4.p2	BC038642|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	AK078166|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	NM_175141|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	AK169085|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	BC051146|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	AK146041|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	AK007661|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	BC137660|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene
mm9_v1_chr6_-_129050920_129050933	0.171773	CDX1,2,4.p2	BC051091|Clec2e|232409|C-type lectin domain family 2, member e	NM_153506|Clec2e|232409|C-type lectin domain family 2, member e
mm9_v1_chrX_-_139401258_139401275	0.170578	CDX1,2,4.p2	AJ243485|Ammecr1|56068|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human)	AK051736|Ammecr1|56068|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human)	NM_019496|Ammecr1|56068|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human)
mm9_v1_chr2_+_104430617_104430708	0.169941	CDX1,2,4.p2	AK158169|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	NM_001037326|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	NM_145529|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	NM_177253|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	BC003241|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	BC058605|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	AK028899|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3
mm9_v1_chr16_+_59148654_59148677	0.169771	CDX1,2,4.p2	BC119110|Olfr195|259000|olfactory receptor 195	NM_146998|Olfr195|259000|olfactory receptor 195
mm9_v1_chr2_-_150835067_150835133	0.16921	CDX1,2,4.p2	AK129253|Ninl|78177|ninein-like	BC067071|Ninl|78177|ninein-like	NM_207204|Ninl|78177|ninein-like
mm9_v1_chr8_-_19892900_19893049	0.169068	CDX1,2,4.p2	AK036306|2610005L07Rik|381598|cadherin 11 pseudogene	AK135487|6820431F20Rik|547150|cadherin 11 pseudogene	BC064022|2610005L07Rik|381598|cadherin 11 pseudogene	AK033345|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK170069|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK083828|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK012880|2610005L07Rik|381598|cadherin 11 pseudogene	AK167066|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK132389|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene
mm9_v1_chr10_-_116333934_116333934	0.168852	CDX1,2,4.p2	AK144383|Gm239|237558|predicted gene 239	AK144411|Gm239|237558|predicted gene 239	NM_001033333|Gm239|237558|predicted gene 239
mm9_v1_chrX_-_165625110_165625142	0.168431	CDX1,2,4.p2	BC059090|Amelx|11704|amelogenin X chromosome	D31768|Amelx|11704|amelogenin X chromosome	D31769|Amelx|11704|amelogenin X chromosome	AK029358|Amelx|11704|amelogenin X chromosome	NM_001081978|Amelx|11704|amelogenin X chromosome	NM_009666|Amelx|11704|amelogenin X chromosome	S74899|Amelx|11704|amelogenin X chromosome
mm9_v1_chr4_+_48552806_48552952	0.168369	CDX1,2,4.p2	AK075956|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	NM_001145925|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	AK017795|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	AK011381|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	NM_001145924|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene
mm9_v1_chr10_+_78037170_78037331	0.168	CDX1,2,4.p2	NM_173751|Ilvbl|216136|ilvB (bacterial acetolactate synthase)-like	BC056459|Ilvbl|216136|ilvB (bacterial acetolactate synthase)-like	BC052054|Ilvbl|216136|ilvB (bacterial acetolactate synthase)-like
mm9_v1_chr11_-_53520811_53520848	0.167702	CDX1,2,4.p2	BC002033|Rad50|19360|RAD50 homolog (S. cerevisiae)	AK018001|Rad50|19360|RAD50 homolog (S. cerevisiae)	AK037641|Rad50|19360|RAD50 homolog (S. cerevisiae)	NM_009012|Rad50|19360|RAD50 homolog (S. cerevisiae)
mm9_v1_chr14_-_73785035_73785066	0.167154	CDX1,2,4.p2	AK002599|Itm2b|16432|integral membrane protein 2B	AK153103|Itm2b|16432|integral membrane protein 2B	AK159307|Itm2b|16432|integral membrane protein 2B	AK003224|Itm2b|16432|integral membrane protein 2B	BC004731|Itm2b|16432|integral membrane protein 2B	AK003587|Itm2b|16432|integral membrane protein 2B	AK003928|Itm2b|16432|integral membrane protein 2B	AK088270|Itm2b|16432|integral membrane protein 2B	AK159340|Itm2b|16432|integral membrane protein 2B	AK159426|Itm2b|16432|integral membrane protein 2B	AK159628|Itm2b|16432|integral membrane protein 2B	AK159792|Itm2b|16432|integral membrane protein 2B	AK160101|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr1_+_21339757_21339831	0.166521	CDX1,2,4.p2	NM_183322|Khdc1a|368204|KH domain containing 1A	AK136166|Khdc1a|368204|KH domain containing 1A
mm9_v1_chrX_+_13209894_13209986	0.166054	CDX1,2,4.p2	DQ103766|Gpr34|23890|G protein-coupled receptor 34	DQ103767|Gpr34|23890|G protein-coupled receptor 34	NM_011823|Gpr34|23890|G protein-coupled receptor 34	AK033675|Gpr34|23890|G protein-coupled receptor 34	AK039528|Gpr34|23890|G protein-coupled receptor 34	AK039041|Gpr34|23890|G protein-coupled receptor 34	AK140507|Gpr34|23890|G protein-coupled receptor 34
mm9_v1_chr19_-_39537540_39537568	0.165915	CDX1,2,4.p2	AF047725|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	AK050051|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	BC150721|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	NM_010002|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38
mm9_v1_chr12_+_106397899_106397916	0.165665	CDX1,2,4.p2	AK136181|Tcl1b1|27379|T-cell leukemia/lymphoma 1B, 1	NM_013773|Tcl1b1|27379|T-cell leukemia/lymphoma 1B, 1	AF195488|Tcl1b1|27379|T-cell leukemia/lymphoma 1B, 1
mm9_v1_chrX_-_20639111_20639168	0.165116	CDX1,2,4.p2	AK155039|Zfp182|319535|zinc finger protein 182	BC063066|Zfp182|319535|zinc finger protein 182	AK045698|Zfp182|319535|zinc finger protein 182	NM_001013387|Zfp182|319535|zinc finger protein 182	NM_001111076|Zfp182|319535|zinc finger protein 182	AK043973|Zfp182|319535|zinc finger protein 182
mm9_v1_chr14_+_32149804_32149909	0.164926	CDX1,2,4.p2	AK154277|Capn7|12339|calpain 7	AK169334|Capn7|12339|calpain 7	BC095980|Capn7|12339|calpain 7	AB028640|Capn7|12339|calpain 7	NM_009796|Capn7|12339|calpain 7
mm9_v1_chr8_+_73895221_73895251	0.164333	CDX1,2,4.p2	AK155219|Ocel1|77090|occludin/ELL domain containing 1	AK143433|Ocel1|77090|occludin/ELL domain containing 1	BC019407|Ocel1|77090|occludin/ELL domain containing 1
mm9_v1_chr3_-_88717730_88717876	0.163883	CDX1,2,4.p2	AK163280|Msto1|229524|misato homolog 1 (Drosophila)	BC108354|Msto1|229524|misato homolog 1 (Drosophila)	AK167586|Msto1|229524|misato homolog 1 (Drosophila)	BC008103|Msto1|229524|misato homolog 1 (Drosophila)	AK166834|Msto1|229524|misato homolog 1 (Drosophila)	AK166236|Msto1|229524|misato homolog 1 (Drosophila)	AK170160|Msto1|229524|misato homolog 1 (Drosophila)	AK139708|Msto1|229524|misato homolog 1 (Drosophila)	NM_144898|Msto1|229524|misato homolog 1 (Drosophila)
mm9_v1_chr7_-_5148348_5148348	0.163608	CDX1,2,4.p2	AF324868|Vmn1r56|81015|vomeronasal 1 receptor 56	NM_030740|Vmn1r56|81015|vomeronasal 1 receptor 56
mm9_v1_chr1_-_141677744_141677835	0.163467	CDX1,2,4.p2	AJ871401|EG214403|214403|predicted gene, EG214403	AJ871402|EG214403|214403|predicted gene, EG214403	BC141136|EG214403|214403|predicted gene, EG214403	BC145444|EG214403|214403|predicted gene, EG214403	M29009|EG214403|214403|predicted gene, EG214403	NM_001029977|EG214403|214403|predicted gene, EG214403	NM_001160303|EG214403|214403|predicted gene, EG214403	NM_001160304|EG214403|214403|predicted gene, EG214403
mm9_v1_chr6_+_133242233_133242233	0.163333	CDX1,2,4.p2	AK017421|5530400C23Rik|232426|RIKEN cDNA 5530400C23 gene	NM_027784|5530400C23Rik|232426|RIKEN cDNA 5530400C23 gene
mm9_v1_chr9_-_113935832_113935880	0.162554	CDX1,2,4.p2	AK013142|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK089994|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145665|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145998|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK045742|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC096582|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK141177|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK163472|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK044693|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK039010|Fbxl2|72179|F-box and leucine-rich repeat protein 2	NM_178624|Fbxl2|72179|F-box and leucine-rich repeat protein 2
mm9_v1_chr11_-_120489993_120490076	0.162501	CDX1,2,4.p2	AK038934|Mafg|17134|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	AK083165|Mafg|17134|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
mm9_v1_chr14_-_51405130_51405204	0.161817	CDX1,2,4.p2	BC003272|Ttc5|219022|tetratricopeptide repeat domain 5	BC025610|Ttc5|219022|tetratricopeptide repeat domain 5	AK077874|Ttc5|219022|tetratricopeptide repeat domain 5	BC092074|Ttc5|219022|tetratricopeptide repeat domain 5	AK081214|Ttc5|219022|tetratricopeptide repeat domain 5	AK161279|Ttc5|219022|tetratricopeptide repeat domain 5	AK157777|Ttc5|219022|tetratricopeptide repeat domain 5	AK133953|Ttc5|219022|tetratricopeptide repeat domain 5	BC069946|Ttc5|219022|tetratricopeptide repeat domain 5	AK044781|Ttc5|219022|tetratricopeptide repeat domain 5	NM_001080949|Ttc5|219022|tetratricopeptide repeat domain 5	NM_177625|Ttc5|219022|tetratricopeptide repeat domain 5
mm9_v1_chr12_-_82586025_82586042	0.161268	CDX1,2,4.p2	BC100533|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK079975|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)
mm9_v1_chr11_+_29618531_29618569	0.161122	CDX1,2,4.p2	NM_024226|Rtn4|68585|reticulon 4	AY102283|Rtn4|68585|reticulon 4
mm9_v1_chr14_-_73785068_73785151	0.16048	CDX1,2,4.p2	NM_008410|Itm2b|16432|integral membrane protein 2B	U76253|Itm2b|16432|integral membrane protein 2B	AK077482|Itm2b|16432|integral membrane protein 2B	BC010320|Itm2b|16432|integral membrane protein 2B	AK076139|Itm2b|16432|integral membrane protein 2B	AK152068|Itm2b|16432|integral membrane protein 2B	BC021786|Itm2b|16432|integral membrane protein 2B	AK152983|Itm2b|16432|integral membrane protein 2B	AK159619|Itm2b|16432|integral membrane protein 2B	AB030203|Itm2b|16432|integral membrane protein 2B	AK150378|Itm2b|16432|integral membrane protein 2B	AK150396|Itm2b|16432|integral membrane protein 2B	AK151714|Itm2b|16432|integral membrane protein 2B	AK151889|Itm2b|16432|integral membrane protein 2B	AK152516|Itm2b|16432|integral membrane protein 2B	AK152650|Itm2b|16432|integral membrane protein 2B	AK159378|Itm2b|16432|integral membrane protein 2B	AK160725|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr12_+_80398268_80398337	0.160172	CDX1,2,4.p2	AK032913|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)	NM_009014|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)	AK015771|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)
mm9_v1_chr5_-_135870365_135870452	0.159707	CDX1,2,4.p2	AF516680|Pom121|107939|nuclear pore membrane protein 121	BC053101|Pom121|107939|nuclear pore membrane protein 121	AK154473|Pom121|107939|nuclear pore membrane protein 121	NM_148932|Pom121|107939|nuclear pore membrane protein 121
mm9_v1_chr17_+_19499098_19499098	0.159094	CDX1,2,4.p2	NM_001104551|Vmn2r99|665376|vomeronasal 2, receptor 99
mm9_v1_chr13_-_61643156_61643198	0.158426	CDX1,2,4.p2	AY014777|Ctsm|64139|cathepsin M	AF202528|Ctsm|64139|cathepsin M	AK005550|Ctsm|64139|cathepsin M	AK005428|Ctsm|64139|cathepsin M	NM_022326|Ctsm|64139|cathepsin M
mm9_v1_chr10_+_120471255_120471291	0.158188	CDX1,2,4.p2	BC013268|Wif1|24117|Wnt inhibitory factor 1	AF122923|Wif1|24117|Wnt inhibitory factor 1
mm9_v1_chr14_-_21365595_21365800	0.158176	CDX1,2,4.p2	BC037668|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	AK135203|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	M81483|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	AB221678|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	BC066000|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	NM_008914|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform
mm9_v1_chr4_-_57003214_57003289	0.157844	CDX1,2,4.p2	NM_001142965|6430704M03Rik|230235|RIKEN cDNA 6430704M03 gene	BC132345|6430704M03Rik|230235|RIKEN cDNA 6430704M03 gene
mm9_v1_chr7_+_57854559_57854582	0.157575	CDX1,2,4.p2	AK077105|4933405O20Rik|243996|RIKEN cDNA 4933405O20 gene	NM_172901|4933405O20Rik|243996|RIKEN cDNA 4933405O20 gene	BC060958|4933405O20Rik|243996|RIKEN cDNA 4933405O20 gene
mm9_v1_chrX_+_97800835_97800900	0.157479	CDX1,2,4.p2	NM_133205|Arr3|170735|arrestin 3, retinal	AF156979|Arr3|170735|arrestin 3, retinal	BC017145|Arr3|170735|arrestin 3, retinal
mm9_v1_chrX_+_34847000_34847131	0.157335	CDX1,2,4.p2	AJ972666|Rhox4b|57737|reproductive homeobox 4B	NM_021300|Rhox4b|57737|reproductive homeobox 4B	AF265350|Rhox4b|57737|reproductive homeobox 4B	BC172126|Rhox4b|57737|reproductive homeobox 4B	BC172128|Rhox4e|194856|reproductive homeobox 4E	AB221641|Rhox4d|664610|reproductive homeobox 4D
mm9_v1_chr16_-_88878143_88878282	0.157284	CDX1,2,4.p2	AF345296|Krtap16-6|170655|keratin associated protein 16-6	AF345295|Krtap16-5|77918|keratin associated protein 16-5	BC115545|Krtap16-5|77918|keratin associated protein 16-5	BC115546|Krtap16-5|77918|keratin associated protein 16-5	AK020697|Krtap16-5|77918|keratin associated protein 16-5	NM_130857|Krtap16-5|77918|keratin associated protein 16-5
mm9_v1_chr4_+_134066913_134066990	0.157283	CDX1,2,4.p2	NM_001081099|2610002D18Rik|69885|RIKEN cDNA 2610002D18 gene	BC138271|2610002D18Rik|69885|RIKEN cDNA 2610002D18 gene	AK011279|2610002D18Rik|69885|RIKEN cDNA 2610002D18 gene
mm9_v1_chr13_-_105606826_105607032	0.15718	CDX1,2,4.p2	BC025437|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	AK077779|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	AK075902|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	AK014025|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	AK166770|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	NM_026072|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)
mm9_v1_chr16_-_95078278_95078296	0.156946	CDX1,2,4.p2	AB029502|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U51126|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	AK015481|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	NM_001025590|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6
mm9_v1_chr16_-_22841914_22841951	0.156702	CDX1,2,4.p2	AK179171|Tbccd1|70573|TBCC domain containing 1
mm9_v1_chr13_+_101421285_101421367	0.155948	CDX1,2,4.p2	NM_027139|Taf9|108143|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_027592|Taf9|108143|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC042723|Taf9|108143|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK012905|Taf9|108143|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC019453|Taf9|108143|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC108348|Taf9|108143|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr17_-_25933867_25933930	0.155159	CDX1,2,4.p2	BC008695|Metrn|70083|meteorin, glial cell differentiation regulator	BC037181|Metrn|70083|meteorin, glial cell differentiation regulator	DQ133462|Metrn|70083|meteorin, glial cell differentiation regulator	DQ133463|Metrn|70083|meteorin, glial cell differentiation regulator	DQ133464|Metrn|70083|meteorin, glial cell differentiation regulator	AK007688|Metrn|70083|meteorin, glial cell differentiation regulator
mm9_v1_chr15_-_95359136_95359208	0.154866	CDX1,2,4.p2	NM_016743|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr19_+_34175422_34175462	0.154811	CDX1,2,4.p2	AK019504|Lipm|78753|lipase, family member M	AK037091|Lipm|78753|lipase, family member M	NM_023903|Lipm|78753|lipase, family member M	AK037214|Lipm|78753|lipase, family member M	AK085719|Lipm|78753|lipase, family member M	BC031933|Lipm|78753|lipase, family member M
mm9_v1_chr2_+_163428073_163428114	0.154296	CDX1,2,4.p2	AK043791|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK052794|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK018052|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK156641|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK081680|Ttpal|76080|tocopherol (alpha) transfer protein-like	BC052389|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK033600|Ttpal|76080|tocopherol (alpha) transfer protein-like
mm9_v1_chr4_-_116828657_116828766	0.153555	CDX1,2,4.p2	BC051446|Rps8|20116|ribosomal protein S8	AK010306|Rps8|20116|ribosomal protein S8	AK011642|Rps8|20116|ribosomal protein S8	AK009023|Rps8|20116|ribosomal protein S8	AK011058|Rps8|20116|ribosomal protein S8	AK012435|Rps8|20116|ribosomal protein S8	AK012562|Rps8|20116|ribosomal protein S8	AK019223|Rps8|20116|ribosomal protein S8	AK088660|Rps8|20116|ribosomal protein S8	AK145478|Rps8|20116|ribosomal protein S8	AK146303|Rps8|20116|ribosomal protein S8	AK146806|Rps8|20116|ribosomal protein S8	AK151544|Rps8|20116|ribosomal protein S8	AK166848|Rps8|20116|ribosomal protein S8	AK168609|Rps8|20116|ribosomal protein S8	BC086899|Rps8|20116|ribosomal protein S8	BC100594|Rps8|20116|ribosomal protein S8	BC081464|Rps8|20116|ribosomal protein S8	AK011048|Rps8|20116|ribosomal protein S8	AK012665|Rps8|20116|ribosomal protein S8	AK010650|Rps8|20116|ribosomal protein S8	NM_009098|Rps8|20116|ribosomal protein S8
mm9_v1_chr16_-_56690646_56690662	0.152089	CDX1,2,4.p2	
mm9_v1_chr1_-_191511950_191512003	0.152073	CDX1,2,4.p2	AK080758|Cenpf|108000|centromere protein F	AK029517|Cenpf|108000|centromere protein F	AK165236|Cenpf|108000|centromere protein F	NM_001081363|Cenpf|108000|centromere protein F
mm9_v1_chrX_-_132228309_132228328	0.152003	CDX1,2,4.p2	BC141320|1700008I05Rik|71841|RIKEN cDNA 1700008I05 gene	BC141322|1700008I05Rik|71841|RIKEN cDNA 1700008I05 gene	AK005772|1700008I05Rik|71841|RIKEN cDNA 1700008I05 gene	NM_027952|1700008I05Rik|71841|RIKEN cDNA 1700008I05 gene
mm9_v1_chr7_-_35015239_35015294	0.151824	CDX1,2,4.p2	AK164566|Gpi1|14751|glucose phosphate isomerase 1	AK171956|Gpi1|14751|glucose phosphate isomerase 1	AK159838|Gpi1|14751|glucose phosphate isomerase 1	AK031081|Gpi1|14751|glucose phosphate isomerase 1	BC088995|Gpi1|14751|glucose phosphate isomerase 1	BC157972|Gpi1|14751|glucose phosphate isomerase 1	BC172124|Gpi1|14751|glucose phosphate isomerase 1	AK133827|Gpi1|14751|glucose phosphate isomerase 1	M14220|Gpi1|14751|glucose phosphate isomerase 1	AK137805|Gpi1|14751|glucose phosphate isomerase 1	AK150341|Gpi1|14751|glucose phosphate isomerase 1	AK169681|Gpi1|14751|glucose phosphate isomerase 1	AK134890|Gpi1|14751|glucose phosphate isomerase 1
mm9_v1_chr11_-_101413104_101413268	0.15182	CDX1,2,4.p2	BC068303|Brca1|12189|breast cancer 1	U31625|Brca1|12189|breast cancer 1	U35641|Brca1|12189|breast cancer 1	U68174|Brca1|12189|breast cancer 1	U32446|Brca1|12189|breast cancer 1	AK144702|Brca1|12189|breast cancer 1	AK086173|Brca1|12189|breast cancer 1	NM_009764|Brca1|12189|breast cancer 1
mm9_v1_chr4_-_133101912_133101941	0.15163	CDX1,2,4.p2	NM_010948|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)
mm9_v1_chr3_+_92748407_92748407	0.151613	CDX1,2,4.p2	AF176515|Lce3c|94060|late cornified envelope 3C	AK009036|Lce3c|94060|late cornified envelope 3C	NM_033175|Lce3c|94060|late cornified envelope 3C
mm9_v1_chr10_+_13686174_13686209	0.150312	CDX1,2,4.p2	AK147244|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147348|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147655|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	NM_010437|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2
mm9_v1_chr13_+_105872201_105872213	0.149328	CDX1,2,4.p2	AK016919|4933425L06Rik|66763|RIKEN cDNA 4933425L06 gene	NM_025751|4933425L06Rik|66763|RIKEN cDNA 4933425L06 gene	AK016761|4933425L06Rik|66763|RIKEN cDNA 4933425L06 gene	BC119576|4933425L06Rik|66763|RIKEN cDNA 4933425L06 gene	BC119577|4933425L06Rik|66763|RIKEN cDNA 4933425L06 gene
mm9_v1_chr4_+_12016499_12016564	0.149293	CDX1,2,4.p2	NM_198957|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene	AK169895|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene	BC080741|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene
mm9_v1_chr17_-_37761577_37761577	0.149101	CDX1,2,4.p2	NM_146632|Olfr116|258625|olfactory receptor 116
mm9_v1_chr8_+_109867910_109868036	0.148248	CDX1,2,4.p2	
mm9_v1_chrX_-_102265380_102265463	0.148102	CDX1,2,4.p2	AK153718|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC019699|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK017459|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085485|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085098|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084980|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC055463|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK080296|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK043766|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK047017|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084653|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK144934|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK157237|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK164650|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene
mm9_v1_chr13_-_67033920_67034045	0.147177	CDX1,2,4.p2	BC085282|Mterfd1|66410|MTERF domain containing 1	AK034645|Mterfd1|66410|MTERF domain containing 1	BC025173|Mterfd1|66410|MTERF domain containing 1	AK002299|Mterfd1|66410|MTERF domain containing 1	AK011934|Mterfd1|66410|MTERF domain containing 1	AK010525|Mterfd1|66410|MTERF domain containing 1	NM_025547|Mterfd1|66410|MTERF domain containing 1
mm9_v1_chr7_-_123138599_123138599	0.146821	CDX1,2,4.p2	NM_011445|Sox6|20679|SRY-box containing gene 6	U32614|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr4_-_117438214_117438270	0.146554	CDX1,2,4.p2	BC064748|Klf17|75753|Kruppel-like factor 17	AF508984|Klf17|75753|Kruppel-like factor 17	AK018361|Klf17|75753|Kruppel-like factor 17	AK139827|Klf17|75753|Kruppel-like factor 17	NM_029416|Klf17|75753|Kruppel-like factor 17
mm9_v1_chr9_+_110558996_110559065	0.146153	CDX1,2,4.p2	AK012610|Ccdc12|72654|coiled-coil domain containing 12	NM_028312|Ccdc12|72654|coiled-coil domain containing 12	BC026668|Ccdc12|72654|coiled-coil domain containing 12
mm9_v1_chr4_-_58925575_58925638	0.145702	CDX1,2,4.p2	AK087690|AI314180|230249|expressed sequence AI314180	BC058684|AI314180|230249|expressed sequence AI314180	NM_172381|AI314180|230249|expressed sequence AI314180	AK041579|AI314180|230249|expressed sequence AI314180
mm9_v1_chr8_-_85297983_85298058	0.145608	CDX1,2,4.p2	BC030675|Zfp330|30932|zinc finger protein 330	BC008086|Zfp330|30932|zinc finger protein 330	NM_145600|Zfp330|30932|zinc finger protein 330	AK050534|Zfp330|30932|zinc finger protein 330	AK086617|Zfp330|30932|zinc finger protein 330	BC083081|Zfp330|30932|zinc finger protein 330
mm9_v1_chr4_-_3865501_3865606	0.145093	CDX1,2,4.p2	BC139283|Plag1|56711|pleiomorphic adenoma gene 1	BC139285|Plag1|56711|pleiomorphic adenoma gene 1	AY574219|Plag1|56711|pleiomorphic adenoma gene 1	AK044405|Plag1|56711|pleiomorphic adenoma gene 1	NM_019969|Plag1|56711|pleiomorphic adenoma gene 1
mm9_v1_chr17_+_23990734_23990751	0.144735	CDX1,2,4.p2	BC024903|Prss32|69814|protease, serine, 32	NM_027220|Prss32|69814|protease, serine, 32	AK008023|Prss32|69814|protease, serine, 32	AY266139|Prss32|69814|protease, serine, 32
mm9_v1_chrX_-_153853209_153853243	0.144648	CDX1,2,4.p2	U49908|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	NM_011077|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	U73910|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	AK158481|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)
mm9_v1_chr6_-_58422871_58422871	0.144463	CDX1,2,4.p2	NM_001166729|Vmn1r31|626828|vomeronasal 1 receptor 31
mm9_v1_chr11_+_9091944_9091944	0.142973	CDX1,2,4.p2	AK036546|Abca13|268379|ATP-binding cassette, sub-family A (ABC1), member 13	NM_178259|Abca13|268379|ATP-binding cassette, sub-family A (ABC1), member 13
mm9_v1_chr5_-_130731280_130731426	0.142637	CDX1,2,4.p2	AK005079|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	AK019228|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	AK168847|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	BC003849|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	NM_023248|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	AK014648|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	X99668|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)
mm9_v1_chr1_+_62750471_62750778	0.142487	CDX1,2,4.p2	AK153553|Nrp2|18187|neuropilin 2	BC057028|Nrp2|18187|neuropilin 2	BC098200|Nrp2|18187|neuropilin 2	AF483506|Nrp2|18187|neuropilin 2	AF483507|Nrp2|18187|neuropilin 2
mm9_v1_chr18_-_53904193_53904270	0.142072	CDX1,2,4.p2	AK044952|Cep120|225523|centrosomal protein 120	BC053439|Cep120|225523|centrosomal protein 120	NM_178686|Cep120|225523|centrosomal protein 120	AK089236|Cep120|225523|centrosomal protein 120	AK089242|Cep120|225523|centrosomal protein 120	AK044808|Cep120|225523|centrosomal protein 120	AK079319|Cep120|225523|centrosomal protein 120	AK047594|Cep120|225523|centrosomal protein 120	AK038916|Cep120|225523|centrosomal protein 120
mm9_v1_chr17_+_6806387_6806526	0.140993	CDX1,2,4.p2	NM_001166627|Dynlt1f|100040531|dynein light chain Tctex-type 1F	AK168478|Dynlt1c|100040563|dynein light chain Tctex-type 1C	NM_001166630|Dynlt1c|100040563|dynein light chain Tctex-type 1C	M25825|Dynlt1b|21648|dynein light chain Tctex-type 1D	EF110999|Dynlt1c|100040563|dynein light chain Tctex-type 1C
mm9_v1_chr14_-_64704225_64704226	0.140833	CDX1,2,4.p2	NM_001081063|Prss55|71037|protease, serine, 55	BC115562|Prss55|71037|protease, serine, 55
mm9_v1_chr19_+_55328128_55328228	0.14005	CDX1,2,4.p2	AK150542|Acsl5|433256|acyl-CoA synthetase long-chain family member 5	AK150663|Acsl5|433256|acyl-CoA synthetase long-chain family member 5	AK145894|Acsl5|433256|acyl-CoA synthetase long-chain family member 5
mm9_v1_chr6_+_113588460_113588613	0.139894	CDX1,2,4.p2	NM_001113553|Irak2|108960|interleukin-1 receptor-associated kinase 2	NM_172161|Irak2|108960|interleukin-1 receptor-associated kinase 2	AK148248|Irak2|108960|interleukin-1 receptor-associated kinase 2	AY162378|Irak2|108960|interleukin-1 receptor-associated kinase 2	AY162379|Irak2|108960|interleukin-1 receptor-associated kinase 2	AY162381|Irak2|108960|interleukin-1 receptor-associated kinase 2	AK033707|Irak2|108960|interleukin-1 receptor-associated kinase 2	AK028733|Irak2|108960|interleukin-1 receptor-associated kinase 2	AK078062|Irak2|108960|interleukin-1 receptor-associated kinase 2	AK150056|Irak2|108960|interleukin-1 receptor-associated kinase 2	BC085324|Irak2|108960|interleukin-1 receptor-associated kinase 2	AK151428|Irak2|108960|interleukin-1 receptor-associated kinase 2	AK152682|Irak2|108960|interleukin-1 receptor-associated kinase 2	AJ440756|Irak2|108960|interleukin-1 receptor-associated kinase 2	AK154715|Irak2|108960|interleukin-1 receptor-associated kinase 2
mm9_v1_chr9_-_95758738_95758738	0.139618	CDX1,2,4.p2	BC053441|1700065D16Rik|73410|RIKEN cDNA 1700065D16 gene	NM_028533|1700065D16Rik|73410|RIKEN cDNA 1700065D16 gene
mm9_v1_chr8_-_44613490_44613490	0.139398	CDX1,2,4.p2	AK015931|Adam26b|382007|a disintegrin and metallopeptidase domain 26B	NM_001009547|Adam26b|382007|a disintegrin and metallopeptidase domain 26B
mm9_v1_chr6_+_115894955_115894978	0.138748	CDX1,2,4.p2	AK135944|H1foo|171506|H1 histone family, member O, oocyte-specific	AK165127|H1foo|171506|H1 histone family, member O, oocyte-specific	AY007195|H1foo|171506|H1 histone family, member O, oocyte-specific	NM_138311|H1foo|171506|H1 histone family, member O, oocyte-specific	AK162154|H1foo|171506|H1 histone family, member O, oocyte-specific	BC137916|H1foo|171506|H1 histone family, member O, oocyte-specific	BC145046|H1foo|171506|H1 histone family, member O, oocyte-specific	AK162137|H1foo|171506|H1 histone family, member O, oocyte-specific
mm9_v1_chr1_-_75274936_75275038	0.138391	CDX1,2,4.p2	L34214|Resp18|19711|regulated endocrine-specific protein 18	NM_009049|Resp18|19711|regulated endocrine-specific protein 18
mm9_v1_chr6_-_123600652_123600652	0.138084	CDX1,2,4.p2	NM_001104637|Vmn2r22|546913|vomeronasal 2, receptor 22
mm9_v1_chr9_+_98197280_98197292	0.137395	CDX1,2,4.p2	BC092086|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3
mm9_v1_chr3_-_26230791_26230830	0.136256	CDX1,2,4.p2	AK083116|Nlgn1|192167|neuroligin 1	AK122433|Nlgn1|192167|neuroligin 1	NM_138666|Nlgn1|192167|neuroligin 1
mm9_v1_chr5_-_136384495_136384514	0.136075	CDX1,2,4.p2	
mm9_v1_chr4_+_155387803_155387982	0.135721	CDX1,2,4.p2	NM_011659|Tnfrsf4|22163|tumor necrosis factor receptor superfamily, member 4	BC139239|Tnfrsf4|22163|tumor necrosis factor receptor superfamily, member 4	BC139266|Tnfrsf4|22163|tumor necrosis factor receptor superfamily, member 4	BC065782|Tnfrsf4|22163|tumor necrosis factor receptor superfamily, member 4	Z21674|Tnfrsf4|22163|tumor necrosis factor receptor superfamily, member 4
mm9_v1_chr6_-_142271469_142271500	0.135526	CDX1,2,4.p2	AF240694|Slco1a5|108096|solute carrier organic anion transporter family, member 1a5	NM_130861|Slco1a5|108096|solute carrier organic anion transporter family, member 1a5	AK029706|Slco1a5|108096|solute carrier organic anion transporter family, member 1a5
mm9_v1_chr2_-_93689902_93690028	0.135322	CDX1,2,4.p2	BC039569|Accs|329470|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)	NM_183220|Accs|329470|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)	AK011867|Accs|329470|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)	AK040509|Accs|329470|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)
mm9_v1_chr7_+_16705217_16705304	0.13501	CDX1,2,4.p2	NM_133727|Kptn|70394|kaptin	AK081226|Kptn|70394|kaptin	AK009746|Kptn|70394|kaptin	BC018316|Kptn|70394|kaptin
mm9_v1_chr3_-_95110715_95110725	0.134909	CDX1,2,4.p2	BC062140|Anxa9|71790|annexin A9	AK003395|Anxa9|71790|annexin A9	NM_001085383|Anxa9|71790|annexin A9
mm9_v1_chr5_-_143665474_143665607	0.134875	CDX1,2,4.p2	
mm9_v1_chr5_+_104937363_104937405	0.134415	CDX1,2,4.p2	AK164034|BC005561|100042165|cDNA sequence BC005561	NM_001166581|BC005561|100042165|cDNA sequence BC005561
mm9_v1_chr6_+_105627738_105627848	0.134317	CDX1,2,4.p2	NM_001109749|Cntn4|269784|contactin 4	NM_173004|Cntn4|269784|contactin 4	AK036262|Cntn4|269784|contactin 4	BC115766|Cntn4|269784|contactin 4
mm9_v1_chr8_-_72149070_72149075	0.133901	CDX1,2,4.p2	AK139223|Zfp868|234362|zinc finger protein 868	NM_001045553|Zfp868|234362|zinc finger protein 868
mm9_v1_chr1_-_173211220_173211350	0.133707	CDX1,2,4.p2	AK134341|Ppox|19044|protoporphyrinogen oxidase	AK142632|Ppox|19044|protoporphyrinogen oxidase	BC002047|Ppox|19044|protoporphyrinogen oxidase	U25114|Ppox|19044|protoporphyrinogen oxidase	NM_008911|Ppox|19044|protoporphyrinogen oxidase
mm9_v1_chr9_+_7628229_7628230	0.133539	CDX1,2,4.p2	BC152335|Mmp20|30800|matrix metallopeptidase 20 (enamelysin)	BC152336|Mmp20|30800|matrix metallopeptidase 20 (enamelysin)	AF155933|Mmp20|30800|matrix metallopeptidase 20 (enamelysin)	NM_013903|Mmp20|30800|matrix metallopeptidase 20 (enamelysin)
mm9_v1_chr6_-_71773747_71773805	0.13334	CDX1,2,4.p2	AK039187|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010369|Mrpl35|66223|mitochondrial ribosomal protein L35	AK012807|Mrpl35|66223|mitochondrial ribosomal protein L35	AK004385|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010223|Mrpl35|66223|mitochondrial ribosomal protein L35	BC028750|Mrpl35|66223|mitochondrial ribosomal protein L35	NM_025430|Mrpl35|66223|mitochondrial ribosomal protein L35
mm9_v1_chr11_-_115229039_115229044	0.133305	CDX1,2,4.p2	AK138882|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene
mm9_v1_chrX_-_34708836_34708836	0.133226	CDX1,2,4.p2	AK133120|Akap14|434756|A kinase (PRKA) anchor protein 14	BC147265|Akap14|434756|A kinase (PRKA) anchor protein 14	BC147494|Akap14|434756|A kinase (PRKA) anchor protein 14	NM_001033785|Akap14|434756|A kinase (PRKA) anchor protein 14
mm9_v1_chr5_+_136293975_136293975	0.133022	CDX1,2,4.p2	BC058385|Srrm3|58212|serine/arginine repetitive matrix 3	NM_021403|Srrm3|58212|serine/arginine repetitive matrix 3
mm9_v1_chrX_-_163647057_163647080	0.132609	CDX1,2,4.p2	BC018286|Tmsb4x|19241|thymosin, beta 4, X chromosome	X16053|Tmsb4x|19241|thymosin, beta 4, X chromosome
mm9_v1_chrX_+_16099994_16100016	0.132333	CDX1,2,4.p2	AK006892|Cypt1|66742|cysteine-rich perinuclear theca 1	AK016467|Cypt1|66742|cysteine-rich perinuclear theca 1	NM_025738|Cypt1|66742|cysteine-rich perinuclear theca 1	BC048455|Cypt1|66742|cysteine-rich perinuclear theca 1	BC061079|Cypt1|66742|cysteine-rich perinuclear theca 1	AM040451|Cypt1|66742|cysteine-rich perinuclear theca 1	AM040454|Cypt1|66742|cysteine-rich perinuclear theca 1	AM040455|Cypt1|66742|cysteine-rich perinuclear theca 1	AM040456|Cypt7|664725|cysteine-rich perinuclear theca 7	AM040457|Cypt8|664723|cysteine-rich perinuclear theca 8	NM_001039941|Cypt8|664723|cysteine-rich perinuclear theca 8	NM_001039943|Cypt7|664725|cysteine-rich perinuclear theca 7	AF463502|Cypt1|66742|cysteine-rich perinuclear theca 1
mm9_v1_chr5_+_136592559_136592606	0.132237	CDX1,2,4.p2	AK158610|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	NM_011293|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	AK158644|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	BC042939|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	D85818|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J
mm9_v1_chr1_+_9591347_9591354	0.132052	CDX1,2,4.p2	AK043759|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene	NM_178399|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene
mm9_v1_chr1_-_13117243_13117243	0.13167	CDX1,2,4.p2	AK134292|Prdm14|383491|PR domain containing 14	NM_001081209|Prdm14|383491|PR domain containing 14
mm9_v1_chr8_+_82235708_82235749	0.131242	CDX1,2,4.p2	BC031460|Anapc10|68999|anaphase promoting complex subunit 10	NM_026904|Anapc10|68999|anaphase promoting complex subunit 10	AK219569|Anapc10|68999|anaphase promoting complex subunit 10	AK041373|Anapc10|68999|anaphase promoting complex subunit 10
mm9_v1_chr4_+_116230293_116230350	0.130896	CDX1,2,4.p2	AK037224|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	AK133761|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	AK019942|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	BC066034|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	NM_029868|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1
mm9_v1_chr14_+_70945119_70945160	0.130575	CDX1,2,4.p2	AK012301|Reep4|72549|receptor accessory protein 4
mm9_v1_chr1_-_135557934_135557977	0.130336	CDX1,2,4.p2	AK148376|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK078105|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK145740|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK167700|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK041148|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK017663|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK035705|Zbed6|667118|zinc finger, BED domain containing 6	NM_144530|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr7_+_14209315_14209343	0.129988	CDX1,2,4.p2	NM_001184980|Sult2a5|434264|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 5
mm9_v1_chr4_-_41688124_41688233	0.129968	CDX1,2,4.p2	AF226605|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AY390764|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AY390765|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AY390766|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AY390768|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AF030198|Sigmar1|18391|sigma non-opioid intracellular receptor 1	BC019930|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AK159886|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AK002718|Sigmar1|18391|sigma non-opioid intracellular receptor 1	BC002000|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AF004927|Sigmar1|18391|sigma non-opioid intracellular receptor 1	NM_011014|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AK154300|Sigmar1|18391|sigma non-opioid intracellular receptor 1
mm9_v1_chr15_+_44455984_44456003	0.129403	CDX1,2,4.p2	AK004366|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	AF076524|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9
mm9_v1_chr3_-_103545641_103545788	0.129255	CDX1,2,4.p2	AK159746|Hipk1|15257|homeodomain interacting protein kinase 1	AK076611|Hipk1|15257|homeodomain interacting protein kinase 1
mm9_v1_chr1_-_122167658_122167658	0.129227	CDX1,2,4.p2	AK167028|Steap3|68428|STEAP family member 3	NM_001085409|Steap3|68428|STEAP family member 3
mm9_v1_chr7_+_50432957_50432973	0.129131	CDX1,2,4.p2	AK145615|Zfp936|668620|zinc finger protein 936	NM_001034893|Zfp936|668620|zinc finger protein 936	BC066874|Zfp936|668620|zinc finger protein 936
mm9_v1_chr9_+_106402297_106402322	0.129113	CDX1,2,4.p2	NM_001146701|Iqcf1|74267|IQ motif containing F1	NM_028843|Iqcf1|74267|IQ motif containing F1	BC049769|Iqcf1|74267|IQ motif containing F1	AK006797|Iqcf1|74267|IQ motif containing F1
mm9_v1_chr8_+_3470861_3470861	0.128872	CDX1,2,4.p2	BC050809|1700019B03Rik|76406|RIKEN cDNA 1700019B03 gene	NM_029598|1700019B03Rik|76406|RIKEN cDNA 1700019B03 gene
mm9_v1_chr13_+_22036962_22036998	0.128818	CDX1,2,4.p2	BC053084|Zfp184|193452|zinc finger protein 184 (Kruppel-like)	NM_183014|Zfp184|193452|zinc finger protein 184 (Kruppel-like)	AK036164|Zfp184|193452|zinc finger protein 184 (Kruppel-like)
mm9_v1_chr4_-_118951578_118951709	0.128435	CDX1,2,4.p2	AK213628|Ybx1|22608|Y box protein 1	AK181881|Ybx1|22608|Y box protein 1	AK197905|Ybx1|22608|Y box protein 1
mm9_v1_chr12_-_4234293_4234293	0.128411	CDX1,2,4.p2	AK029226|Cenpo|52504|centromere protein O	NM_134046|Cenpo|52504|centromere protein O
mm9_v1_chr10_+_62562532_62562550	0.127987	CDX1,2,4.p2	BC092234|Atoh7|53404|atonal homolog 7 (Drosophila)
mm9_v1_chr8_+_69035638_69035658	0.127977	CDX1,2,4.p2	NM_028927|Tktl2|74419|transketolase-like 2	AK016603|Tktl2|74419|transketolase-like 2	AK029871|Tktl2|74419|transketolase-like 2	BC132110|Tktl2|74419|transketolase-like 2	BC132298|Tktl2|74419|transketolase-like 2
mm9_v1_chr8_+_126545374_126545424	0.127974	CDX1,2,4.p2	AK133906|Urb2|382038|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
mm9_v1_chr16_+_10835151_10835160	0.127817	CDX1,2,4.p2	AK143588|A630055G03Rik|223970|RIKEN cDNA A630055G03 gene	NM_001162932|A630055G03Rik|223970|RIKEN cDNA A630055G03 gene	AK080331|A630055G03Rik|223970|RIKEN cDNA A630055G03 gene
mm9_v1_chr16_-_16869309_16869347	0.125849	CDX1,2,4.p2	BC117051|Vpreb1|22362|pre-B lymphocyte gene 1	BC119175|Vpreb1|22362|pre-B lymphocyte gene 1	BC144850|Vpreb1|22362|pre-B lymphocyte gene 1	AK010843|Vpreb1|22362|pre-B lymphocyte gene 1	AK010879|Vpreb1|22362|pre-B lymphocyte gene 1	X05556|Vpreb1|22362|pre-B lymphocyte gene 1	NM_016982|Vpreb1|22362|pre-B lymphocyte gene 1
mm9_v1_chr7_+_148091870_148091986	0.124774	CDX1,2,4.p2	BC024386|BC024386|212965|cDNA sequence BC023486	BC014806|BC024386|212965|cDNA sequence BC023486	BC039766|BC024386|212965|cDNA sequence BC023486	BC087948|BC024386|212965|cDNA sequence BC023486	BC061156|BC024386|212965|cDNA sequence BC023486
mm9_v1_chr11_+_79902901_79902965	0.124507	CDX1,2,4.p2	NM_001029856|Atad5|237877|ATPase family, AAA domain containing 5	BC038279|Atad5|237877|ATPase family, AAA domain containing 5	AK053857|Atad5|237877|ATPase family, AAA domain containing 5	AK085211|Atad5|237877|ATPase family, AAA domain containing 5	AY557610|Atad5|237877|ATPase family, AAA domain containing 5	AK165945|Atad5|237877|ATPase family, AAA domain containing 5	AK048355|Atad5|237877|ATPase family, AAA domain containing 5	AK032814|Atad5|237877|ATPase family, AAA domain containing 5
mm9_v1_chr4_-_49857641_49857765	0.124412	CDX1,2,4.p2	AK173314|Grin3a|242443|glutamate receptor ionotropic, NMDA3A
mm9_v1_chr1_-_9934196_9934205	0.124245	CDX1,2,4.p2	AK003573|Snhg6|73824|small nucleolar RNA host gene (non-protein coding) 6
mm9_v1_chr14_+_58691522_58691522	0.124018	CDX1,2,4.p2	AK158782|Fgf9|14180|fibroblast growth factor 9	NM_013518|Fgf9|14180|fibroblast growth factor 9
mm9_v1_chr12_+_106429252_106429254	0.123985	CDX1,2,4.p2	AF195490|Tcl1b3|27378|T-cell leukemia/lymphoma 1B, 3	BC119260|Tcl1b3|27378|T-cell leukemia/lymphoma 1B, 3	BC120575|Tcl1b3|27378|T-cell leukemia/lymphoma 1B, 3	NM_013772|Tcl1b3|27378|T-cell leukemia/lymphoma 1B, 3
mm9_v1_chr6_+_112409498_112409498	0.123476	CDX1,2,4.p2	BC024383|Cav3|12391|caveolin 3	NM_007617|Cav3|12391|caveolin 3
mm9_v1_chr2_-_87814819_87814819	0.123302	CDX1,2,4.p2	AB061229|Olfr74|117005|olfactory receptor 74	NM_054091|Olfr74|117005|olfactory receptor 74
mm9_v1_chr13_-_64230610_64230680	0.122791	CDX1,2,4.p2	BC107211|Slc35d2|70484|solute carrier family 35, member D2	AB117931|Slc35d2|70484|solute carrier family 35, member D2	AB117932|Slc35d2|70484|solute carrier family 35, member D2	BC107210|Slc35d2|70484|solute carrier family 35, member D2	AK159148|Slc35d2|70484|solute carrier family 35, member D2	NM_001001321|Slc35d2|70484|solute carrier family 35, member D2	AK154257|Slc35d2|70484|solute carrier family 35, member D2
mm9_v1_chr8_-_119606348_119606348	0.122689	CDX1,2,4.p2	AY164484|Pkd1l2|76645|polycystic kidney disease 1 like 2	NM_029686|Pkd1l2|76645|polycystic kidney disease 1 like 2
mm9_v1_chr6_-_130336891_130336991	0.121124	CDX1,2,4.p2	AY078436|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	NM_016659|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	AF419250|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	AF444273|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1
mm9_v1_chr18_+_4375599_4375605	0.121042	CDX1,2,4.p2	AK002680|Mtpap|67440|mitochondrial poly(A) polymerase	AK045203|Mtpap|67440|mitochondrial poly(A) polymerase	AK076565|Mtpap|67440|mitochondrial poly(A) polymerase	BC017535|Mtpap|67440|mitochondrial poly(A) polymerase	AK031070|Mtpap|67440|mitochondrial poly(A) polymerase
mm9_v1_chr5_-_110698902_110698941	0.120419	CDX1,2,4.p2	AK146216|Pgam5|72542|phosphoglycerate mutase family member 5	NM_001163538|Pgam5|72542|phosphoglycerate mutase family member 5	NM_028273|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr17_-_35089399_35089425	0.120365	CDX1,2,4.p2	BC058123|1110038B12Rik|68763|RIKEN cDNA 1110038B12 gene	AK003073|1110038B12Rik|68763|RIKEN cDNA 1110038B12 gene	AK004150|1110038B12Rik|68763|RIKEN cDNA 1110038B12 gene	AK002372|1110038B12Rik|68763|RIKEN cDNA 1110038B12 gene
mm9_v1_chr5_-_110698814_110698873	0.120084	CDX1,2,4.p2	BC052179|Pgam5|72542|phosphoglycerate mutase family member 5	BC021317|Pgam5|72542|phosphoglycerate mutase family member 5	AK162266|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr10_-_42303392_42303437	0.119743	CDX1,2,4.p2	NM_152229|Nr2e1|21907|nuclear receptor subfamily 2, group E, member 1	AK132201|Nr2e1|21907|nuclear receptor subfamily 2, group E, member 1	S77482|Nr2e1|21907|nuclear receptor subfamily 2, group E, member 1	BC057104|Nr2e1|21907|nuclear receptor subfamily 2, group E, member 1
mm9_v1_chr10_-_62254978_62254996	0.119667	CDX1,2,4.p2	BC079652|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC010199|Ccar1|67500|cell division cycle and apoptosis regulator 1
mm9_v1_chr15_+_82000246_82000509	0.119587	CDX1,2,4.p2	BC023333|Srebf2|20788|sterol regulatory element binding factor 2
mm9_v1_chr9_+_79914685_79914721	0.119251	CDX1,2,4.p2	AK053904|Senp6|215351|SUMO/sentrin specific peptidase 6	NM_146003|Senp6|215351|SUMO/sentrin specific peptidase 6
mm9_v1_chr7_+_65913571_65913874	0.118885	CDX1,2,4.p2	NM_009728|Atp10a|11982|ATPase, class V, type 10A	AK132174|Atp10a|11982|ATPase, class V, type 10A	AK172149|Atp10a|11982|ATPase, class V, type 10A	AF156549|Atp10a|11982|ATPase, class V, type 10A	BC138356|Atp10a|11982|ATPase, class V, type 10A	BC138357|Atp10a|11982|ATPase, class V, type 10A	AK172972|Atp10a|11982|ATPase, class V, type 10A	AF011337|Atp10a|11982|ATPase, class V, type 10A
mm9_v1_chr6_-_130330679_130330825	0.118818	CDX1,2,4.p2	AF146571|Klra15|27423|killer cell lectin-like receptor, subfamily A, member 15	NM_013793|Klra15|27423|killer cell lectin-like receptor, subfamily A, member 15	U34890|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	AF218077|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	BC125466|Klra15|27423|killer cell lectin-like receptor, subfamily A, member 15	BC125494|Klra15|27423|killer cell lectin-like receptor, subfamily A, member 15	BC140968|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	BC144929|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	AF288381|Klra22|93969|killer cell lectin-like receptor subfamily A, member 22	NM_053152|Klra22|93969|killer cell lectin-like receptor subfamily A, member 22
mm9_v1_chr3_-_101640061_101640095	0.118319	CDX1,2,4.p2	AK161057|Mab21l3|242125|mab-21-like 3 (C. elegans)	BC037703|Mab21l3|242125|mab-21-like 3 (C. elegans)	AK172389|Mab21l3|242125|mab-21-like 3 (C. elegans)
mm9_v1_chr4_+_48292679_48292697	0.118029	CDX1,2,4.p2	AK020257|Invs|16348|inversin	AK029305|Invs|16348|inversin	AJ010902|Invs|16348|inversin	AF034860|Invs|16348|inversin	AK029087|Invs|16348|inversin	AK041671|Invs|16348|inversin
mm9_v1_chr8_-_28524173_28524415	0.117245	CDX1,2,4.p2	AY574265|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	AJ245706|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	AK149262|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	BC031985|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	NM_021369|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6
mm9_v1_chr6_+_24741187_24741214	0.1153	CDX1,2,4.p2	AY920282|Spam1|20690|sperm adhesion molecule 1	NM_001079875|Spam1|20690|sperm adhesion molecule 1	NM_009241|Spam1|20690|sperm adhesion molecule 1	U33958|Spam1|20690|sperm adhesion molecule 1	AK005638|Spam1|20690|sperm adhesion molecule 1	AK015325|Spam1|20690|sperm adhesion molecule 1	AY920283|Spam1|20690|sperm adhesion molecule 1
mm9_v1_chr19_+_56623108_56623165	0.114816	CDX1,2,4.p2	AK004564|Nhlrc2|66866|NHL repeat containing 2	AK002650|Nhlrc2|66866|NHL repeat containing 2
mm9_v1_chr7_+_25184715_25184739	0.11384	CDX1,2,4.p2	AK169651|1500002O20Rik|71997|RIKEN cDNA 1500002O20 gene	BC034211|1500002O20Rik|71997|RIKEN cDNA 1500002O20 gene
mm9_v1_chr15_+_76173936_76173991	0.113761	CDX1,2,4.p2	AK011288|Cyc1|66445|cytochrome c-1	NM_025567|Cyc1|66445|cytochrome c-1	AK151299|Cyc1|66445|cytochrome c-1	AK170272|Cyc1|66445|cytochrome c-1	BC005620|Cyc1|66445|cytochrome c-1	AK002815|Cyc1|66445|cytochrome c-1	BC082790|Cyc1|66445|cytochrome c-1
mm9_v1_chr5_+_122822549_122822598	0.113043	CDX1,2,4.p2	AK087968|Gpn3|68080|GPN-loop GTPase 3	AK080720|Gpn3|68080|GPN-loop GTPase 3	AK146783|Gpn3|68080|GPN-loop GTPase 3	AK016996|Gpn3|68080|GPN-loop GTPase 3
mm9_v1_chr14_+_29831283_29831689	0.112921	CDX1,2,4.p2	NM_176920|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	AK044492|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	AK138618|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC099587|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC132594|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC145990|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1
mm9_v1_chr3_-_94910786_94910815	0.112808	CDX1,2,4.p2	AK158062|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	AK098097|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	AK150898|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	AK151984|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm9_v1_chr17_+_18158696_18158700	0.112463	CDX1,2,4.p2	BC115535|Fpr-rs4|14291|formyl peptide receptor, related sequence 4	NM_008041|Fpr-rs4|14291|formyl peptide receptor, related sequence 4	BC115534|Fpr-rs4|14291|formyl peptide receptor, related sequence 4
mm9_v1_chr14_-_51815597_51815597	0.111369	CDX1,2,4.p2	NM_007449|Ang2|11731|angiogenin, ribonuclease A family, member 2
mm9_v1_chr3_-_74947644_74947693	0.11124	CDX1,2,4.p2	BC050789|Zbbx|213234|zinc finger, B-box domain containing	BC100435|Zbbx|213234|zinc finger, B-box domain containing	NM_172515|Zbbx|213234|zinc finger, B-box domain containing	AK029899|Zbbx|213234|zinc finger, B-box domain containing	AK133102|Zbbx|213234|zinc finger, B-box domain containing
mm9_v1_chr13_-_14705281_14705338	0.11	CDX1,2,4.p2	AF279255|Mrpl32|75398|mitochondrial ribosomal protein L32	AK078324|Mrpl32|75398|mitochondrial ribosomal protein L32	AK031791|Mrpl32|75398|mitochondrial ribosomal protein L32	AK002753|Mrpl32|75398|mitochondrial ribosomal protein L32	NM_029271|Mrpl32|75398|mitochondrial ribosomal protein L32	AB049650|Mrpl32|75398|mitochondrial ribosomal protein L32	BC052214|Mrpl32|75398|mitochondrial ribosomal protein L32
mm9_v1_chr13_+_43493989_43494007	0.109818	CDX1,2,4.p2	
mm9_v1_chr15_+_101278175_101278219	0.109708	CDX1,2,4.p2	NM_025487|1700011A15Rik|66322|RIKEN cDNA 1700011A15 gene	BC048463|1700011A15Rik|66322|RIKEN cDNA 1700011A15 gene	AK007046|1700011A15Rik|66322|RIKEN cDNA 1700011A15 gene	AK005855|1700011A15Rik|66322|RIKEN cDNA 1700011A15 gene
mm9_v1_chr6_+_128921177_128921181	0.109635	CDX1,2,4.p2	AY137341|Clec2g|70809|C-type lectin domain family 2, member g	AY137342|Clec2g|70809|C-type lectin domain family 2, member g	NM_001168223|Clec2g|70809|C-type lectin domain family 2, member g	NM_001168224|Clec2g|70809|C-type lectin domain family 2, member g	AK137753|Clec2g|70809|C-type lectin domain family 2, member g
mm9_v1_chr6_-_136752898_136752939	0.109585	CDX1,2,4.p2	BC111813|Hist4h4|320332|histone cluster 4, H4	NM_175652|Hist4h4|320332|histone cluster 4, H4	AK045187|Hist4h4|320332|histone cluster 4, H4
mm9_v1_chr4_+_116692006_116692070	0.109369	CDX1,2,4.p2	NM_001111277|Eif2b3|108067|eukaryotic translation initiation factor 2B, subunit 3	NM_175135|Eif2b3|108067|eukaryotic translation initiation factor 2B, subunit 3	AK172173|Eif2b3|108067|eukaryotic translation initiation factor 2B, subunit 3	AK145856|Eif2b3|108067|eukaryotic translation initiation factor 2B, subunit 3	AK172302|Eif2b3|108067|eukaryotic translation initiation factor 2B, subunit 3
mm9_v1_chr1_+_66368571_66368671	0.109363	CDX1,2,4.p2	AK046341|Mtap2|17756|microtubule-associated protein 2	AK086484|Mtap2|17756|microtubule-associated protein 2	M21041|Mtap2|17756|microtubule-associated protein 2	AK141458|Mtap2|17756|microtubule-associated protein 2
mm9_v1_chr8_-_18741546_18741552	0.109108	CDX1,2,4.p2	AK143974|Angpt2|11601|angiopoietin 2	AK019860|Angpt2|11601|angiopoietin 2	NM_007426|Angpt2|11601|angiopoietin 2
mm9_v1_chr5_+_130549195_130549195	0.108756	CDX1,2,4.p2	AF038008|Tpst1|22021|protein-tyrosine sulfotransferase 1	NM_013837|Tpst1|22021|protein-tyrosine sulfotransferase 1
mm9_v1_chr19_+_11771544_11771582	0.108448	CDX1,2,4.p2	AK143410|Gm97|225923|predicted gene 97	NM_001033283|Gm97|225923|predicted gene 97	BC141228|Gm97|225923|predicted gene 97	BC145553|Gm97|225923|predicted gene 97	BC094934|Gm97|225923|predicted gene 97
mm9_v1_chr8_+_127100010_127100049	0.107728	CDX1,2,4.p2	AK008629|Capn9|73647|calpain 9	NM_023709|Capn9|73647|calpain 9	AK144514|Capn9|73647|calpain 9	BC058748|Capn9|73647|calpain 9	U89513|Capn9|73647|calpain 9
mm9_v1_chr10_-_58904445_58904526	0.107278	CDX1,2,4.p2	AY180915|Oit3|18302|oncoprotein induced transcript 3	AF356506|Oit3|18302|oncoprotein induced transcript 3	AK050081|Oit3|18302|oncoprotein induced transcript 3	AK040570|Oit3|18302|oncoprotein induced transcript 3	NM_010959|Oit3|18302|oncoprotein induced transcript 3
mm9_v1_chr15_+_99800504_99800504	0.107274	CDX1,2,4.p2	AK139636|Larp4|207214|La ribonucleoprotein domain family, member 4	NM_001080948|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr14_-_122864879_122864880	0.107015	CDX1,2,4.p2	NM_022987|Zic5|65100|zinc finger protein of the cerebellum 5	AB042155|Zic5|65100|zinc finger protein of the cerebellum 5
mm9_v1_chr11_+_73502279_73502349	0.107009	CDX1,2,4.p2	AK145370|Zfp735|76390|zinc finger protein 735	NM_001126489|Zfp735|76390|zinc finger protein 735	BC137974|Zfp735|76390|zinc finger protein 735
mm9_v1_chr13_+_44826638_44826639	0.106751	CDX1,2,4.p2	AK147226|Jarid2|16468|jumonji, AT rich interactive domain 2
mm9_v1_chr12_-_86039703_86039802	0.106439	CDX1,2,4.p2	AY993933|Tmem90a|627191|transmembrane protein 90a	AK140195|Tmem90a|627191|transmembrane protein 90a	NM_001033334|Tmem90a|627191|transmembrane protein 90a	AY993934|Tmem90a|627191|transmembrane protein 90a
mm9_v1_chr12_-_82695944_82695966	0.106352	CDX1,2,4.p2	BC013096|Med6|69792|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast)	NM_027213|Med6|69792|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast)	AK171784|Med6|69792|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast)
mm9_v1_chr5_+_89012600_89012641	0.106066	CDX1,2,4.p2	AK045610|Rufy3|52822|RUN and FYVE domain containing 3	AK083242|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr15_+_63678863_63678863	0.106035	CDX1,2,4.p2	AK006248|Gsdmcl1|74236|gasdermin C-like 1	NM_001167581|Gsdmcl1|74236|gasdermin C-like 1
mm9_v1_chr19_+_29218114_29218256	0.105843	CDX1,2,4.p2	
mm9_v1_chr6_+_123179860_123179891	0.105485	CDX1,2,4.p2	NM_001190320|Clec4n|56620|C-type lectin domain family 4, member n	NM_001190321|Clec4n|56620|C-type lectin domain family 4, member n	NM_020001|Clec4n|56620|C-type lectin domain family 4, member n	AK089166|Clec4n|56620|C-type lectin domain family 4, member n	AK131697|Clec4n|56620|C-type lectin domain family 4, member n	AK154673|Clec4n|56620|C-type lectin domain family 4, member n	AK171046|Clec4n|56620|C-type lectin domain family 4, member n	AF240357|Clec4n|56620|C-type lectin domain family 4, member n	AF240358|Clec4n|56620|C-type lectin domain family 4, member n	AF240359|Clec4n|56620|C-type lectin domain family 4, member n	BC023008|Clec4n|56620|C-type lectin domain family 4, member n
mm9_v1_chr6_-_118089060_118089172	0.10483	CDX1,2,4.p2	AK028045|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2	AK145992|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2	AK160867|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2	AK019496|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2	NM_030165|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2
mm9_v1_chr11_+_20443315_20443422	0.104433	CDX1,2,4.p2	AB041541|Sertad2|58172|SERTA domain containing 2	BC014726|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr5_-_110537215_110537219	0.104248	CDX1,2,4.p2	AK144812|Gtpbp6|107999|GTP binding protein 6 (putative)	AK152225|Gtpbp6|107999|GTP binding protein 6 (putative)	AK152972|Gtpbp6|107999|GTP binding protein 6 (putative)	NM_145147|Gtpbp6|107999|GTP binding protein 6 (putative)
mm9_v1_chr15_-_8394462_8394663	0.104225	CDX1,2,4.p2	AJ627033|Nipbl|71175|Nipped-B homolog (Drosophila)	AJ640138|Nipbl|71175|Nipped-B homolog (Drosophila)	NM_027707|Nipbl|71175|Nipped-B homolog (Drosophila)	NM_201232|Nipbl|71175|Nipped-B homolog (Drosophila)
mm9_v1_chr9_-_122775060_122775123	0.103791	CDX1,2,4.p2	BC099930|Zfp445|235682|zinc finger protein 445	NM_173364|Zfp445|235682|zinc finger protein 445
mm9_v1_chr11_-_69571681_69571794	0.103746	CDX1,2,4.p2	BC114996|Polr2a|20020|polymerase (RNA) II (DNA directed) polypeptide A	NM_009089|Polr2a|20020|polymerase (RNA) II (DNA directed) polypeptide A	U37500|Polr2a|20020|polymerase (RNA) II (DNA directed) polypeptide A
mm9_v1_chr17_-_65929913_65929945	0.103668	CDX1,2,4.p2	
mm9_v1_chr11_+_80022524_80022572	0.102953	CDX1,2,4.p2	AK147801|Rhot1|59040|ras homolog gene family, member T1	AK167502|Rhot1|59040|ras homolog gene family, member T1	NM_001163354|Rhot1|59040|ras homolog gene family, member T1	NM_001163355|Rhot1|59040|ras homolog gene family, member T1	NM_021536|Rhot1|59040|ras homolog gene family, member T1
mm9_v1_chr5_+_104864136_104864144	0.102681	CDX1,2,4.p2	AK160540|Spp1|20750|secreted phosphoprotein 1	NM_009263|Spp1|20750|secreted phosphoprotein 1	AK133555|Spp1|20750|secreted phosphoprotein 1	AK145099|Spp1|20750|secreted phosphoprotein 1	AK149588|Spp1|20750|secreted phosphoprotein 1	AK150819|Spp1|20750|secreted phosphoprotein 1	AK150845|Spp1|20750|secreted phosphoprotein 1	AK151562|Spp1|20750|secreted phosphoprotein 1	AK153089|Spp1|20750|secreted phosphoprotein 1	AK154908|Spp1|20750|secreted phosphoprotein 1	AK165393|Spp1|20750|secreted phosphoprotein 1	AK165965|Spp1|20750|secreted phosphoprotein 1	AK166395|Spp1|20750|secreted phosphoprotein 1	AK171158|Spp1|20750|secreted phosphoprotein 1
mm9_v1_chr13_+_55885928_55886022	0.102643	CDX1,2,4.p2	BC089518|Catsper3|76856|cation channel, sperm associated 3	AK014942|Catsper3|76856|cation channel, sperm associated 3	NM_029772|Catsper3|76856|cation channel, sperm associated 3	AY263400|Catsper3|76856|cation channel, sperm associated 3	HM179540|Catsper3|76856|cation channel, sperm associated 3	HM179541|Catsper3|76856|cation channel, sperm associated 3
mm9_v1_chr18_-_89063689_89063737	0.102154	CDX1,2,4.p2	AK142069|Socs6|54607|suppressor of cytokine signaling 6	AK053803|Socs6|54607|suppressor of cytokine signaling 6	AK156591|Socs6|54607|suppressor of cytokine signaling 6
mm9_v1_chr6_+_134870418_134870458	0.102027	CDX1,2,4.p2	AK047669|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	NM_009875|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	AK050240|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	AK158411|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	BC014296|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B
mm9_v1_chr2_+_170111212_170111359	0.101943	CDX1,2,4.p2	
mm9_v1_chr16_-_32003226_32003372	0.101661	CDX1,2,4.p2	AK158338|Senp5|320213|SUMO/sentrin specific peptidase 5	AY522918|Senp5|320213|SUMO/sentrin specific peptidase 5	BC080830|Senp5|320213|SUMO/sentrin specific peptidase 5	AK043171|Senp5|320213|SUMO/sentrin specific peptidase 5	AK042087|Senp5|320213|SUMO/sentrin specific peptidase 5	AK028177|Senp5|320213|SUMO/sentrin specific peptidase 5	NM_177103|Senp5|320213|SUMO/sentrin specific peptidase 5
mm9_v1_chr10_-_33501920_33501920	0.101104	CDX1,2,4.p2	NM_001101452|Gm4794|215895|predicted gene 4794
mm9_v1_chr1_+_180168023_180168042	0.100723	CDX1,2,4.p2	AK216786|Pppde1|78825|PPPDE peptidase domain containing 1
mm9_v1_chr5_+_76958331_76958438	0.10064	CDX1,2,4.p2	BC064811|Exoc1|69940|exocyst complex component 1	NM_027270|Exoc1|69940|exocyst complex component 1	AK042620|Exoc1|69940|exocyst complex component 1	AK155980|Exoc1|69940|exocyst complex component 1	BC087543|Exoc1|69940|exocyst complex component 1	BC024678|Exoc1|69940|exocyst complex component 1
mm9_v1_chr14_-_21271443_21271446	0.100543	CDX1,2,4.p2	AK029536|Ttc18|76670|tetratricopeptide repeat domain 18	BC138269|Ttc18|76670|tetratricopeptide repeat domain 18	BC145225|Ttc18|76670|tetratricopeptide repeat domain 18	BC145226|Ttc18|76670|tetratricopeptide repeat domain 18	NM_001163638|Ttc18|76670|tetratricopeptide repeat domain 18	NM_001163639|Ttc18|76670|tetratricopeptide repeat domain 18	NM_029698|Ttc18|76670|tetratricopeptide repeat domain 18
mm9_v1_chr16_-_21153958_21154072	0.100463	CDX1,2,4.p2	AK009367|2310042E22Rik|66561|RIKEN cDNA 2310042E22 gene	AK009777|2310042E22Rik|66561|RIKEN cDNA 2310042E22 gene	AK009766|2310042E22Rik|66561|RIKEN cDNA 2310042E22 gene	AK009984|2310042E22Rik|66561|RIKEN cDNA 2310042E22 gene	BC115655|2310042E22Rik|66561|RIKEN cDNA 2310042E22 gene	BC115656|2310042E22Rik|66561|RIKEN cDNA 2310042E22 gene	AK009496|2310042E22Rik|66561|RIKEN cDNA 2310042E22 gene	AK009632|2310042E22Rik|66561|RIKEN cDNA 2310042E22 gene	AK009635|2310042E22Rik|66561|RIKEN cDNA 2310042E22 gene	AK010016|2310042E22Rik|66561|RIKEN cDNA 2310042E22 gene	AK009997|2310042E22Rik|66561|RIKEN cDNA 2310042E22 gene	AK009566|2310042E22Rik|66561|RIKEN cDNA 2310042E22 gene	NM_025634|2310042E22Rik|66561|RIKEN cDNA 2310042E22 gene	AK009751|2310042E22Rik|66561|RIKEN cDNA 2310042E22 gene
mm9_v1_chrX_-_80733262_80733262	0.100264	CDX1,2,4.p2	AB032764|Tsga8|100502723|testis specific gene A8	NM_021898|Tsga8|100502723|testis specific gene A8	NM_021898|Tsga8|100502723|testis specific gene A8
mm9_v1_chr3_-_10208575_10208582	0.100207	CDX1,2,4.p2	AK003143|Fabp4|11770|fatty acid binding protein 4, adipocyte	AK088535|Fabp4|11770|fatty acid binding protein 4, adipocyte	NM_024406|Fabp4|11770|fatty acid binding protein 4, adipocyte
mm9_v1_chrX_-_35988279_35988319	0.100046	CDX1,2,4.p2	BC029909|C1galt1c1|59048|C1GALT1-specific chaperone 1	NM_021550|C1galt1c1|59048|C1GALT1-specific chaperone 1
mm9_v1_chr5_-_135115175_135115219	0.0997389	CDX1,2,4.p2	AK169312|Eif4h|22384|eukaryotic translation initiation factor 4H	AK149841|Eif4h|22384|eukaryotic translation initiation factor 4H	AK136999|Eif4h|22384|eukaryotic translation initiation factor 4H	AK135390|Eif4h|22384|eukaryotic translation initiation factor 4H	AK166567|Eif4h|22384|eukaryotic translation initiation factor 4H	AK169353|Eif4h|22384|eukaryotic translation initiation factor 4H	NM_033561|Eif4h|22384|eukaryotic translation initiation factor 4H	AK045004|Eif4h|22384|eukaryotic translation initiation factor 4H	AK150088|Eif4h|22384|eukaryotic translation initiation factor 4H	BC014796|Eif4h|22384|eukaryotic translation initiation factor 4H	AK088818|Eif4h|22384|eukaryotic translation initiation factor 4H	AK168872|Eif4h|22384|eukaryotic translation initiation factor 4H	AK169407|Eif4h|22384|eukaryotic translation initiation factor 4H	AK132034|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chrX_-_151360657_151360657	0.0995686	CDX1,2,4.p2	BC109339|Magea6|17142|melanoma antigen, family A, 6	NM_020019|Magea6|17142|melanoma antigen, family A, 6
mm9_v1_chr10_+_42894504_42894509	0.0987138	CDX1,2,4.p2	AK018547|9030612E09Rik|74530|RIKEN cDNA 9030612E09 gene	AK029173|9030612E09Rik|74530|RIKEN cDNA 9030612E09 gene	NM_172419|9030612E09Rik|74530|RIKEN cDNA 9030612E09 gene
mm9_v1_chr12_+_86337250_86337338	0.0985752	CDX1,2,4.p2	AK044440|Ylpm1|56531|YLP motif containing 1	NM_178363|Ylpm1|56531|YLP motif containing 1	BC031541|Ylpm1|56531|YLP motif containing 1	AK087500|Ylpm1|56531|YLP motif containing 1	AB033168|Ylpm1|56531|YLP motif containing 1
mm9_v1_chrX_+_109352657_109352657	0.0985718	CDX1,2,4.p2	AK016644|4933403O08Rik|71030|RIKEN cDNA 4933403O08 gene	NM_001177389|4933403O08Rik|71030|RIKEN cDNA 4933403O08 gene
mm9_v1_chr12_+_119082333_119082371	0.0982831	CDX1,2,4.p2	BC006933|Cdca7l|217946|cell division cycle associated 7 like	NM_146040|Cdca7l|217946|cell division cycle associated 7 like	AK149673|Cdca7l|217946|cell division cycle associated 7 like	BC071198|Cdca7l|217946|cell division cycle associated 7 like
mm9_v1_chr4_+_101091913_101091947	0.0980822	CDX1,2,4.p2	NM_001177605|Ak4|11639|adenylate kinase 4	AK154374|Ak4|11639|adenylate kinase 4	NM_001177604|Ak4|11639|adenylate kinase 4
mm9_v1_chr3_-_92822980_92822984	0.0974615	CDX1,2,4.p2	AK003825|Lce1m|66203|late cornified envelope 1M	AK019517|Lce1m|66203|late cornified envelope 1M	AK004318|Lce1m|66203|late cornified envelope 1M	BC109181|Lce1m|66203|late cornified envelope 1M	BC109182|Lce1m|66203|late cornified envelope 1M	NM_025420|Lce1m|66203|late cornified envelope 1M
mm9_v1_chr18_+_14864659_14864697	0.0967457	CDX1,2,4.p2	AK010717|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	NM_001163609|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	BC116990|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	BC116992|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	BC144771|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	BC144772|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8
mm9_v1_chr1_-_16094459_16094513	0.0966819	CDX1,2,4.p2	BC086786|Rpl7|19989|ribosomal protein L7	M85235|Rpl7|19989|ribosomal protein L7	BC025909|Rpl7|19989|ribosomal protein L7	BC096452|Rpl7|19989|ribosomal protein L7	BC051261|Rpl7|19989|ribosomal protein L7	AK168137|Rpl7|19989|ribosomal protein L7	AK017074|Rpl7|19989|ribosomal protein L7	AK135460|Rpl7|19989|ribosomal protein L7	AK150943|Rpl7|19989|ribosomal protein L7	AK167124|Rpl7|19989|ribosomal protein L7	AK168227|Rpl7|19989|ribosomal protein L7	M29016|Rpl7|19989|ribosomal protein L7	AK146219|Rpl7|19989|ribosomal protein L7	AK050656|Rpl7|19989|ribosomal protein L7	AK088291|Rpl7|19989|ribosomal protein L7	NM_011291|Rpl7|19989|ribosomal protein L7
mm9_v1_chrX_+_50251737_50251764	0.0965051	CDX1,2,4.p2	AF283559|Rps2|16898|ribosomal protein S2
mm9_v1_chr8_+_87356149_87356307	0.095993	CDX1,2,4.p2	AK002738|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK003314|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK019570|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK028227|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	BC061069|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	NM_183358|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK009723|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	BC022592|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1
mm9_v1_chr19_-_11205360_11205367	0.0958048	CDX1,2,4.p2	AK006056|1700017D01Rik|69369|RIKEN cDNA 1700017D01 gene	NM_027058|1700017D01Rik|69369|RIKEN cDNA 1700017D01 gene
mm9_v1_chr5_+_148081701_148081706	0.0957919	CDX1,2,4.p2	AK020261|Pdx1|18609|pancreatic and duodenal homeobox 1	BC103572|Pdx1|18609|pancreatic and duodenal homeobox 1	BC103581|Pdx1|18609|pancreatic and duodenal homeobox 1	BC103582|Pdx1|18609|pancreatic and duodenal homeobox 1	BC105642|Pdx1|18609|pancreatic and duodenal homeobox 1	NM_008814|Pdx1|18609|pancreatic and duodenal homeobox 1
mm9_v1_chr11_-_101087730_101087737	0.0955258	CDX1,2,4.p2	AK154565|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)
mm9_v1_chr19_-_27463677_27463827	0.0951633	CDX1,2,4.p2	AK004416|D19Bwg1357e|52874|DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed
mm9_v1_chr11_+_68829412_68829631	0.0951288	CDX1,2,4.p2	NM_001013256|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	NM_001143790|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	BC072625|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	BC066078|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK145919|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK165906|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	BC147495|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	BC147497|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK044055|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK030876|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK038651|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene
mm9_v1_chrX_+_99044723_99044723	0.095076	CDX1,2,4.p2	AK142977|Nhsl2|100042480|NHS-like 2	NM_001163610|Nhsl2|100042480|NHS-like 2
mm9_v1_chr1_-_165015800_165015800	0.0948515	CDX1,2,4.p2	AK019544|4921528O07Rik|78258|RIKEN cDNA 4921528O07 gene	NM_030071|4921528O07Rik|78258|RIKEN cDNA 4921528O07 gene
mm9_v1_chr8_-_94879643_94879671	0.0947728	CDX1,2,4.p2	AK181465|4933436C20Rik|71296|RIKEN cDNA 4933436C20 gene
mm9_v1_chr8_-_23235509_23235538	0.0945075	CDX1,2,4.p2	AK165108|Nek5|330721|NIMA (never in mitosis gene a)-related expressed kinase 5	BC053516|Nek5|330721|NIMA (never in mitosis gene a)-related expressed kinase 5	AK032672|Nek5|330721|NIMA (never in mitosis gene a)-related expressed kinase 5	NM_177898|Nek5|330721|NIMA (never in mitosis gene a)-related expressed kinase 5	AK054168|Nek5|330721|NIMA (never in mitosis gene a)-related expressed kinase 5
mm9_v1_chr7_-_25084361_25084383	0.0943476	CDX1,2,4.p2	AK149960|Zfp61|22719|zinc finger protein 61	AK148158|Zfp61|22719|zinc finger protein 61
mm9_v1_chr5_-_74023659_74023666	0.0942831	CDX1,2,4.p2	BC031901|Lrrc66|231296|leucine rich repeat containing 66	NM_153568|Lrrc66|231296|leucine rich repeat containing 66	AK051875|Lrrc66|231296|leucine rich repeat containing 66
mm9_v1_chr11_+_43247209_43247232	0.0937709	CDX1,2,4.p2	NM_148673|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	NM_198936|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)
mm9_v1_chrX_-_162948399_162948409	0.0935539	CDX1,2,4.p2	AK140929|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing	BC067008|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing	NM_001007577|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing
mm9_v1_chr11_+_93905557_93905590	0.0932661	CDX1,2,4.p2	BC052058|Spag9|70834|sperm associated antigen 9	BC060100|Spag9|70834|sperm associated antigen 9	BC094670|Spag9|70834|sperm associated antigen 9
mm9_v1_chr3_-_107948968_107949026	0.0930998	CDX1,2,4.p2	BC041107|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	BC003462|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK168578|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK133749|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK169067|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK167438|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3
mm9_v1_chr15_+_76369247_76369393	0.0927687	CDX1,2,4.p2	AK161447|Gpr172b|52710|G protein-coupled receptor 172B	AK142597|Gpr172b|52710|G protein-coupled receptor 172B	AK080449|Gpr172b|52710|G protein-coupled receptor 172B	BC016264|Gpr172b|52710|G protein-coupled receptor 172B	AK152335|Gpr172b|52710|G protein-coupled receptor 172B	AK029579|Gpr172b|52710|G protein-coupled receptor 172B	NM_029643|Gpr172b|52710|G protein-coupled receptor 172B	AK008081|Gpr172b|52710|G protein-coupled receptor 172B	AK032015|Gpr172b|52710|G protein-coupled receptor 172B
mm9_v1_chr18_+_4165829_4165870	0.0919344	CDX1,2,4.p2	AK006241|Lyzl1|67328|lysozyme-like 1	AK006630|Lyzl1|67328|lysozyme-like 1	NM_026092|Lyzl1|67328|lysozyme-like 1	BC048450|Lyzl1|67328|lysozyme-like 1	AY572447|Lyzl1|67328|lysozyme-like 1
mm9_v1_chr8_-_71601126_71601131	0.091711	CDX1,2,4.p2	AK076433|Slc18a1|110877|solute carrier family 18 (vesicular monoamine), member 1	AK144034|Slc18a1|110877|solute carrier family 18 (vesicular monoamine), member 1
mm9_v1_chr2_+_74707394_74707441	0.0916973	CDX1,2,4.p2	AK207939|Mtx2|53375|metaxin 2	AK212612|Mtx2|53375|metaxin 2	AK216047|Mtx2|53375|metaxin 2
mm9_v1_chrX_-_100451942_100451952	0.0913073	CDX1,2,4.p2	BC107249|4930519F16Rik|75106|RIKEN cDNA 4930519F16 gene	AK039711|4930519F16Rik|75106|RIKEN cDNA 4930519F16 gene	BC115753|4930519F16Rik|75106|RIKEN cDNA 4930519F16 gene	NM_029170|4930519F16Rik|75106|RIKEN cDNA 4930519F16 gene	BC107248|4930519F16Rik|75106|RIKEN cDNA 4930519F16 gene	BC114984|4930519F16Rik|75106|RIKEN cDNA 4930519F16 gene	AK015842|4930519F16Rik|75106|RIKEN cDNA 4930519F16 gene
mm9_v1_chr12_-_85741801_85741813	0.0912724	CDX1,2,4.p2	AK079267|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK002618|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5
mm9_v1_chr16_-_58826586_58826586	0.0911392	CDX1,2,4.p2	NM_147002|Olfr175-ps1|259004|olfactory receptor 175, pseudogene 1
mm9_v1_chr4_+_133658497_133658531	0.0910656	CDX1,2,4.p2	AK048494|Ubxn11|67586|UBX domain protein 11	NM_026257|Ubxn11|67586|UBX domain protein 11	AK015720|Ubxn11|67586|UBX domain protein 11	BC019461|Ubxn11|67586|UBX domain protein 11
mm9_v1_chr8_-_35153699_35153753	0.090361	CDX1,2,4.p2	
mm9_v1_chr9_-_103104394_103104479	0.0900784	CDX1,2,4.p2	AK030437|Srprb|20818|signal recognition particle receptor, B subunit	NM_009275|Srprb|20818|signal recognition particle receptor, B subunit	AK075583|Srprb|20818|signal recognition particle receptor, B subunit	AK007859|Srprb|20818|signal recognition particle receptor, B subunit	AK167039|Srprb|20818|signal recognition particle receptor, B subunit	U17343|Srprb|20818|signal recognition particle receptor, B subunit	BC003798|Srprb|20818|signal recognition particle receptor, B subunit	AK004854|Srprb|20818|signal recognition particle receptor, B subunit	AK008383|Srprb|20818|signal recognition particle receptor, B subunit	AK015469|Srprb|20818|signal recognition particle receptor, B subunit	AK160600|Srprb|20818|signal recognition particle receptor, B subunit
mm9_v1_chr3_+_136333733_136333756	0.0896165	CDX1,2,4.p2	J05479|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	NM_008913|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	BC138612|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chrX_+_160577257_160577273	0.0893716	CDX1,2,4.p2	NM_001130513|Ace2|70008|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
mm9_v1_chr11_+_58234612_58234640	0.0892725	CDX1,2,4.p2	NM_027239|1810065E05Rik|69864|RIKEN cDNA 1810065E05 gene	BC026941|1810065E05Rik|69864|RIKEN cDNA 1810065E05 gene
mm9_v1_chr3_-_100489393_100489406	0.0886953	CDX1,2,4.p2	AK153336|Man1a2|17156|mannosidase, alpha, class 1A, member 2	NM_010763|Man1a2|17156|mannosidase, alpha, class 1A, member 2
mm9_v1_chr4_+_140924106_140924134	0.0886237	CDX1,2,4.p2	BC147048|Fam131c|277743|family with sequence similarity 131, member C	BC147049|Fam131c|277743|family with sequence similarity 131, member C	NM_001085513|Fam131c|277743|family with sequence similarity 131, member C
mm9_v1_chr8_+_124119866_124119959	0.0882904	CDX1,2,4.p2	AK199755|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta
mm9_v1_chr7_-_134530626_134530679	0.0878585	CDX1,2,4.p2	AK020267|9130019O22Rik|78921|RIKEN cDNA 9130019O22 gene	BC031466|9130019O22Rik|78921|RIKEN cDNA 9130019O22 gene	AK035847|9130019O22Rik|78921|RIKEN cDNA 9130019O22 gene	NM_030226|9130019O22Rik|78921|RIKEN cDNA 9130019O22 gene
mm9_v1_chr6_-_71212223_71212274	0.0877496	CDX1,2,4.p2	AK027936|Smyd1|12180|SET and MYND domain containing 1	AK076266|Smyd1|12180|SET and MYND domain containing 1	AK142153|Smyd1|12180|SET and MYND domain containing 1	U76373|Smyd1|12180|SET and MYND domain containing 1	U76374|Smyd1|12180|SET and MYND domain containing 1	AK142252|Smyd1|12180|SET and MYND domain containing 1	BC076601|Smyd1|12180|SET and MYND domain containing 1	NM_001160127|Smyd1|12180|SET and MYND domain containing 1	NM_009762|Smyd1|12180|SET and MYND domain containing 1
mm9_v1_chr2_-_87875293_87875294	0.0875661	CDX1,2,4.p2	AB061228|Olfr73|117004|olfactory receptor 73	NM_054090|Olfr73|117004|olfactory receptor 73	BC140145|Olfr73|117004|olfactory receptor 73	BC143167|Olfr73|117004|olfactory receptor 73	BC146832|Olfr73|117004|olfactory receptor 73
mm9_v1_chr16_-_19884312_19884367	0.0872757	CDX1,2,4.p2	BC053981|A930003A15Rik|68162|RIKEN cDNA A930003A15 gene	AK153879|A930003A15Rik|68162|RIKEN cDNA A930003A15 gene	AK086168|A930003A15Rik|68162|RIKEN cDNA A930003A15 gene
mm9_v1_chr7_-_20262178_20262212	0.0870893	CDX1,2,4.p2	NM_009695|Apoc2|11813|apolipoprotein C-II
mm9_v1_chr11_+_53246787_53246879	0.0868806	CDX1,2,4.p2	NM_008110|Gdf9|14566|growth differentiation factor 9	AK136145|Gdf9|14566|growth differentiation factor 9	BC052667|Gdf9|14566|growth differentiation factor 9	L06444|Gdf9|14566|growth differentiation factor 9
mm9_v1_chr18_+_80403581_80403591	0.0864531	CDX1,2,4.p2	BC025053|Txnl4a|27366|thioredoxin-like 4A	NM_178604|Txnl4a|27366|thioredoxin-like 4A	AK171121|Txnl4a|27366|thioredoxin-like 4A
mm9_v1_chrX_-_65174607_65174624	0.0860677	CDX1,2,4.p2	AK016292|4933436I01Rik|66780|RIKEN cDNA 4933436I01 gene	BC125317|4933436I01Rik|66780|RIKEN cDNA 4933436I01 gene	BC138016|4933436I01Rik|66780|RIKEN cDNA 4933436I01 gene	AK017084|4933436I01Rik|66780|RIKEN cDNA 4933436I01 gene	NM_025763|4933436I01Rik|66780|RIKEN cDNA 4933436I01 gene
mm9_v1_chr11_+_8948594_8948715	0.0860667	CDX1,2,4.p2	NM_001037928|Gm11992|626870|predicted gene 11992	AK154909|Gm11992|626870|predicted gene 11992	AK160996|Gm11992|626870|predicted gene 11992	BC147253|Gm11992|626870|predicted gene 11992	BC147254|Gm11992|626870|predicted gene 11992
mm9_v1_chr11_+_68369687_68369687	0.0859274	CDX1,2,4.p2	BC024997|Mfsd6l|215723|major facilitator superfamily domain containing 6-like	NM_146004|Mfsd6l|215723|major facilitator superfamily domain containing 6-like
mm9_v1_chr10_+_7445867_7445883	0.0858878	CDX1,2,4.p2	BC009136|Katna1|23924|katanin p60 (ATPase-containing) subunit A1
mm9_v1_chr8_-_74009902_74009965	0.0854462	CDX1,2,4.p2	NM_001164679|Ano8|382014|anoctamin 8
mm9_v1_chr10_+_116018336_116018351	0.0848805	CDX1,2,4.p2	AK077360|5330438D12Rik|327824|RIKEN cDNA 5330438D12 gene
mm9_v1_chr8_-_28313004_28313018	0.084567	CDX1,2,4.p2	AK006984|Got1l1|76615|glutamic-oxaloacetic transaminase 1-like 1	BC052754|Got1l1|76615|glutamic-oxaloacetic transaminase 1-like 1	NM_029674|Got1l1|76615|glutamic-oxaloacetic transaminase 1-like 1
mm9_v1_chr11_+_80022587_80022605	0.084297	CDX1,2,4.p2	AK169811|Rhot1|59040|ras homolog gene family, member T1	AK021245|Rhot1|59040|ras homolog gene family, member T1	AK019059|Rhot1|59040|ras homolog gene family, member T1
mm9_v1_chr17_-_6476249_6476283	0.0842828	CDX1,2,4.p2	AK166076|Tmem181b-ps|547127|transmembrane protein 181B, pseudogene	BC147312|Tmem181b-ps|547127|transmembrane protein 181B, pseudogene	BC147313|Tmem181b-ps|547127|transmembrane protein 181B, pseudogene
mm9_v1_chr15_+_78673118_78673128	0.0841437	CDX1,2,4.p2	
mm9_v1_chr6_+_106719113_106719221	0.0837241	CDX1,2,4.p2	AK135791|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK010662|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AB063106|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK152739|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	BC031764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	NM_027296|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK011764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK166804|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK139764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1
mm9_v1_chr18_+_37164856_37165092	0.083597	CDX1,2,4.p2	BC079625|Pcdha10|12943|protocadherin alpha 10	AY013757|Pcdha10|12943|protocadherin alpha 10	NM_009961|Pcdha10|12943|protocadherin alpha 10	AB008178|Pcdha10|12943|protocadherin alpha 10
mm9_v1_chr11_-_61575474_61575589	0.0835596	CDX1,2,4.p2	BC051438|Prpsap2|212627|phosphoribosyl pyrophosphate synthetase-associated protein 2	BC106185|Prpsap2|212627|phosphoribosyl pyrophosphate synthetase-associated protein 2	AK076811|Prpsap2|212627|phosphoribosyl pyrophosphate synthetase-associated protein 2	AK077330|Prpsap2|212627|phosphoribosyl pyrophosphate synthetase-associated protein 2	AK038680|Prpsap2|212627|phosphoribosyl pyrophosphate synthetase-associated protein 2	BC023178|Prpsap2|212627|phosphoribosyl pyrophosphate synthetase-associated protein 2	NM_001164242|Prpsap2|212627|phosphoribosyl pyrophosphate synthetase-associated protein 2	NM_001164243|Prpsap2|212627|phosphoribosyl pyrophosphate synthetase-associated protein 2	NM_001164244|Prpsap2|212627|phosphoribosyl pyrophosphate synthetase-associated protein 2	NM_144806|Prpsap2|212627|phosphoribosyl pyrophosphate synthetase-associated protein 2
mm9_v1_chr1_-_108610520_108610597	0.0834997	CDX1,2,4.p2	BC095964|Bcl2|12043|B-cell leukemia/lymphoma 2	AK042257|Bcl2|12043|B-cell leukemia/lymphoma 2
mm9_v1_chr9_-_97011440_97011575	0.0829094	CDX1,2,4.p2	BC008171|Slc25a36|192287|solute carrier family 25, member 36	AK078779|Slc25a36|192287|solute carrier family 25, member 36	NM_138756|Slc25a36|192287|solute carrier family 25, member 36	AK042075|Slc25a36|192287|solute carrier family 25, member 36	AK053646|Slc25a36|192287|solute carrier family 25, member 36
mm9_v1_chr15_-_76500300_76500377	0.082144	CDX1,2,4.p2	AF079514|Foxh1|14106|forkhead box H1	AF110506|Foxh1|14106|forkhead box H1	AF177770|Foxh1|14106|forkhead box H1	AB221574|Foxh1|14106|forkhead box H1	AF069303|Foxh1|14106|forkhead box H1	NM_007989|Foxh1|14106|forkhead box H1	BC119156|Foxh1|14106|forkhead box H1	BC137781|Foxh1|14106|forkhead box H1
mm9_v1_chr7_+_147020072_147020194	0.0820892	CDX1,2,4.p2	NM_177469|Gpr123|52389|G protein-coupled receptor 123	AK082207|Gpr123|52389|G protein-coupled receptor 123
mm9_v1_chr2_+_130230994_130231035	0.0820861	CDX1,2,4.p2	NM_029375|1700020A23Rik|75656|RIKEN cDNA 1700020A23 gene	BC049710|1700020A23Rik|75656|RIKEN cDNA 1700020A23 gene	NM_001163483|1700020A23Rik|75656|RIKEN cDNA 1700020A23 gene	BC137914|1700020A23Rik|75656|RIKEN cDNA 1700020A23 gene	BC137915|1700020A23Rik|75656|RIKEN cDNA 1700020A23 gene
mm9_v1_chr8_+_74764036_74764120	0.0817841	CDX1,2,4.p2	BC003823|Ap1m1|11767|adaptor-related protein complex AP-1, mu subunit 1	AK215581|Ap1m1|11767|adaptor-related protein complex AP-1, mu subunit 1
mm9_v1_chr6_+_129483238_129483284	0.0816777	CDX1,2,4.p2	BC004602|Gabarapl1|57436|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
mm9_v1_chr8_+_74763920_74764019	0.0816261	CDX1,2,4.p2	AK148173|Ap1m1|11767|adaptor-related protein complex AP-1, mu subunit 1
mm9_v1_chr3_+_66789859_66789903	0.081292	CDX1,2,4.p2	BC043045|Rsrc1|66880|arginine/serine-rich coiled-coil 1
mm9_v1_chr19_-_5964121_5964180	0.0810088	CDX1,2,4.p2	BC064795|Pola2|18969|polymerase (DNA directed), alpha 2	D13546|Pola2|18969|polymerase (DNA directed), alpha 2	AK150099|Pola2|18969|polymerase (DNA directed), alpha 2	BC006945|Pola2|18969|polymerase (DNA directed), alpha 2	AK045325|Pola2|18969|polymerase (DNA directed), alpha 2	AK152974|Pola2|18969|polymerase (DNA directed), alpha 2	AK153081|Pola2|18969|polymerase (DNA directed), alpha 2	AK163733|Pola2|18969|polymerase (DNA directed), alpha 2	BC021424|Pola2|18969|polymerase (DNA directed), alpha 2
mm9_v1_chrX_+_34928967_34929045	0.0809139	CDX1,2,4.p2	BC147696|Rhox4d|664610|reproductive homeobox 4D	BC172126|Rhox4b|57737|reproductive homeobox 4B	AJ972668|Rhox4d|664610|reproductive homeobox 4D	NM_001039695|Rhox4d|664610|reproductive homeobox 4D	AB221641|Rhox4d|664610|reproductive homeobox 4D
mm9_v1_chr17_-_35164860_35164960	0.0808823	CDX1,2,4.p2	AK019275|Ng23|78376|Ng23 protein	BC147772|Ng23|78376|Ng23 protein	BC147780|Ng23|78376|Ng23 protein	BC172157|Ng23|78376|Ng23 protein	NM_023893|Ng23|78376|Ng23 protein
mm9_v1_chr5_+_138478451_138478466	0.0806265	CDX1,2,4.p2	AK133180|Smok3b|622474|sperm motility kinase 3B	NM_001039889|Smok3b|622474|sperm motility kinase 3B	AJ245454|Smok3a|545814|sperm motility kinase 3A
mm9_v1_chr19_+_56900698_56900775	0.0803987	CDX1,2,4.p2	AB183526|Tdrd1|83561|tudor domain containing 1	NM_001002238|Tdrd1|83561|tudor domain containing 1	AB183527|Tdrd1|83561|tudor domain containing 1	NM_001002240|Tdrd1|83561|tudor domain containing 1	AK029806|Tdrd1|83561|tudor domain containing 1	NM_031387|Tdrd1|83561|tudor domain containing 1
mm9_v1_chr1_-_44275718_44275775	0.0803334	CDX1,2,4.p2	BC100531|4832428D23Rik|403183|RIKEN cDNA 4832428D23 gene	AK029331|4832428D23Rik|403183|RIKEN cDNA 4832428D23 gene	NM_207281|4832428D23Rik|403183|RIKEN cDNA 4832428D23 gene
mm9_v1_chr15_+_97800138_97800260	0.0795649	CDX1,2,4.p2	
mm9_v1_chr17_+_80706746_80706746	0.079564	CDX1,2,4.p2	NM_001145452|Arhgef33|381112|Rho guanine nucleotide exchange factor (GEF) 33
mm9_v1_chr5_+_89012537_89012542	0.0794386	CDX1,2,4.p2	AK013185|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr10_+_13685882_13685927	0.0789434	CDX1,2,4.p2	AK147419|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2
mm9_v1_chr4_-_6202747_6202782	0.0785535	CDX1,2,4.p2	BC130261|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	AK050020|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	AK050220|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	AK050260|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	NM_007824|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	AK050210|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1
mm9_v1_chr1_-_53244460_53244460	0.078494	CDX1,2,4.p2	AK006101|1700019A02Rik|69397|RIKEN cDNA 1700019A02 gene	NM_027070|1700019A02Rik|69397|RIKEN cDNA 1700019A02 gene
mm9_v1_chr1_-_75274890_75274917	0.0779142	CDX1,2,4.p2	FJ621497|Resp18|19711|regulated endocrine-specific protein 18	AK019440|Resp18|19711|regulated endocrine-specific protein 18	AK012477|Resp18|19711|regulated endocrine-specific protein 18	BC027535|Resp18|19711|regulated endocrine-specific protein 18
mm9_v1_chr14_-_67422871_67422921	0.0777344	CDX1,2,4.p2	AK084113|Dpysl2|12934|dihydropyrimidinase-like 2
mm9_v1_chr2_+_80479021_80479037	0.0775688	CDX1,2,4.p2	AK009187|Nup35|69482|nucleoporin 35	AK145775|Nup35|69482|nucleoporin 35
mm9_v1_chr17_+_37138107_37138107	0.077396	CDX1,2,4.p2	AK139625|Zfp57|22715|zinc finger protein 57	NM_001168502|Zfp57|22715|zinc finger protein 57
mm9_v1_chr10_-_62254998_62255005	0.0772779	CDX1,2,4.p2	AF465615|Ccar1|67500|cell division cycle and apoptosis regulator 1	AK012111|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC060130|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC039939|Ccar1|67500|cell division cycle and apoptosis regulator 1
mm9_v1_chr9_+_106416903_106416944	0.0771269	CDX1,2,4.p2	AK005734|Iqcf5|75470|IQ motif containing F5	NM_029300|Iqcf5|75470|IQ motif containing F5	BC125546|Iqcf5|75470|IQ motif containing F5
mm9_v1_chr2_+_139319874_139319888	0.0769	CDX1,2,4.p2	AK048374|Sptlc3|228677|serine palmitoyltransferase, long chain base subunit 3	BC094496|Sptlc3|228677|serine palmitoyltransferase, long chain base subunit 3
mm9_v1_chr15_-_76554119_76554177	0.0768077	CDX1,2,4.p2	AK186599|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene
mm9_v1_chr13_+_48356795_48356817	0.0767643	CDX1,2,4.p2	NM_031166|Id4|15904|inhibitor of DNA binding 4	X75018|Id4|15904|inhibitor of DNA binding 4	BC145367|Id4|15904|inhibitor of DNA binding 4
mm9_v1_chr9_+_69855789_69855998	0.0765474	CDX1,2,4.p2	AF071429|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK161900|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2
mm9_v1_chr17_+_71553920_71554003	0.076236	CDX1,2,4.p2	AK165218|Lpin2|64898|lipin 2	AK050018|Lpin2|64898|lipin 2	NM_001164885|Lpin2|64898|lipin 2
mm9_v1_chr7_-_134519509_134519563	0.0755931	CDX1,2,4.p2	BC058799|Zfp747|269997|zinc finger protein 747	AK032584|Zfp747|269997|zinc finger protein 747	AK042972|Zfp747|269997|zinc finger protein 747	NM_175560|Zfp747|269997|zinc finger protein 747
mm9_v1_chr16_+_16213434_16213437	0.0754052	CDX1,2,4.p2	AK004650|Pkp2|67451|plakophilin 2	AK004731|Pkp2|67451|plakophilin 2	AK049481|Pkp2|67451|plakophilin 2	AK162000|Pkp2|67451|plakophilin 2	AK167660|Pkp2|67451|plakophilin 2	BC138252|Pkp2|67451|plakophilin 2	BC138253|Pkp2|67451|plakophilin 2	NM_026163|Pkp2|67451|plakophilin 2
mm9_v1_chr2_+_109857966_109858261	0.0753968	CDX1,2,4.p2	AK147056|Ccdc34|68201|coiled-coil domain containing 34	NM_026613|Ccdc34|68201|coiled-coil domain containing 34	BC108339|Ccdc34|68201|coiled-coil domain containing 34	AK019172|Ccdc34|68201|coiled-coil domain containing 34	AK033555|Ccdc34|68201|coiled-coil domain containing 34	AK019247|Ccdc34|68201|coiled-coil domain containing 34	AK012383|Ccdc34|68201|coiled-coil domain containing 34	BC062248|Ccdc34|68201|coiled-coil domain containing 34	AK014021|Ccdc34|68201|coiled-coil domain containing 34	BC089458|Ccdc34|68201|coiled-coil domain containing 34	BC049229|Ccdc34|68201|coiled-coil domain containing 34
mm9_v1_chr5_-_136048841_136048918	0.0753513	CDX1,2,4.p2	AF244367|Ccl24|56221|chemokine (C-C motif) ligand 24	AK009718|Ccl24|56221|chemokine (C-C motif) ligand 24	AF281075|Ccl24|56221|chemokine (C-C motif) ligand 24	AK157068|Ccl24|56221|chemokine (C-C motif) ligand 24	NM_019577|Ccl24|56221|chemokine (C-C motif) ligand 24	BC065389|Ccl24|56221|chemokine (C-C motif) ligand 24
mm9_v1_chr14_+_119379780_119379927	0.0752727	CDX1,2,4.p2	
mm9_v1_chr19_-_5349326_5349384	0.0750662	CDX1,2,4.p2	BC027680|Cst6|73720|cystatin E/M	BC061036|Cst6|73720|cystatin E/M	AK003744|Cst6|73720|cystatin E/M
mm9_v1_chr3_-_94863548_94863564	0.0750119	CDX1,2,4.p2	AK052310|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm9_v1_chr13_-_61037960_61037985	0.0740198	CDX1,2,4.p2	NM_007796|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha
mm9_v1_chr2_+_26775279_26775409	0.0738898	CDX1,2,4.p2	AK215042|Surf2|20931|surfeit gene 2
mm9_v1_chr7_+_138703898_138703948	0.0737867	CDX1,2,4.p2	AK088534|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	AK138004|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	NM_009774|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	U67327|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	BC086790|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	AK190618|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)
mm9_v1_chrX_-_105143713_105143774	0.0737522	CDX1,2,4.p2	BC147603|Gm732|213450|predicted gene 732	BC147609|Gm732|213450|predicted gene 732	AK132985|Gm732|213450|predicted gene 732	NM_001033252|Gm732|213450|predicted gene 732
mm9_v1_chr8_-_44750913_44750913	0.073669	CDX1,2,4.p2	NM_145745|Adam34|252866|a disintegrin and metallopeptidase domain 34
mm9_v1_chr10_+_82323249_82323266	0.0734373	CDX1,2,4.p2	AK172383|Txnrd1|50493|thioredoxin reductase 1
mm9_v1_chr5_+_89012596_89012599	0.0733797	CDX1,2,4.p2	BC049127|Rufy3|52822|RUN and FYVE domain containing 3	NM_027530|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr17_-_24832880_24833058	0.0723944	CDX1,2,4.p2	AF148688|Gfer|11692|growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)	AB041561|Gfer|11692|growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)
mm9_v1_chr15_+_76210904_76210993	0.0721064	CDX1,2,4.p2	AK036810|Heatr7a|223658|HEAT repeat containing 7A	NM_175457|Heatr7a|223658|HEAT repeat containing 7A	AK170702|Heatr7a|223658|HEAT repeat containing 7A	AK090131|Heatr7a|223658|HEAT repeat containing 7A	AK147808|Heatr7a|223658|HEAT repeat containing 7A	AK147897|Heatr7a|223658|HEAT repeat containing 7A	AK038863|Heatr7a|223658|HEAT repeat containing 7A	AK052153|Heatr7a|223658|HEAT repeat containing 7A
mm9_v1_chr4_+_136166351_136166390	0.0717548	CDX1,2,4.p2	AK016074|4930549C01Rik|67663|RIKEN cDNA 4930549C01 gene	NM_026300|4930549C01Rik|67663|RIKEN cDNA 4930549C01 gene	BC048442|4930549C01Rik|67663|RIKEN cDNA 4930549C01 gene	AK015053|4930549C01Rik|67663|RIKEN cDNA 4930549C01 gene
mm9_v1_chr10_-_126648509_126648683	0.0716814	CDX1,2,4.p2	BC021383|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AB054591|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK148299|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK140079|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	NM_054097|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
mm9_v1_chr7_-_52973262_52973371	0.0716133	CDX1,2,4.p2	AK146414|Sphk2|56632|sphingosine kinase 2	AK151990|Sphk2|56632|sphingosine kinase 2	BC053737|Sphk2|56632|sphingosine kinase 2	AF245448|Sphk2|56632|sphingosine kinase 2	NM_001172561|Sphk2|56632|sphingosine kinase 2	NM_203280|Sphk2|56632|sphingosine kinase 2
mm9_v1_chr2_+_174241304_174241382	0.071574	CDX1,2,4.p2	AJ238742|Th1l|57314|TH1-like homolog (Drosophila)	NM_020580|Th1l|57314|TH1-like homolog (Drosophila)	AK049418|Th1l|57314|TH1-like homolog (Drosophila)	BC006959|Th1l|57314|TH1-like homolog (Drosophila)	BC031747|Th1l|57314|TH1-like homolog (Drosophila)	AJ238743|Th1l|57314|TH1-like homolog (Drosophila)	AK159866|Th1l|57314|TH1-like homolog (Drosophila)	AK010360|Th1l|57314|TH1-like homolog (Drosophila)	AJ238741|Th1l|57314|TH1-like homolog (Drosophila)
mm9_v1_chr4_-_73596693_73596749	0.0713671	CDX1,2,4.p2	BC115483|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	BC115484|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	AK009124|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	AK009097|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	NM_027104|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	NM_027981|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene
mm9_v1_chr1_+_148342795_148342819	0.0708204	CDX1,2,4.p2	AK046878|Fam5c|215378|family with sequence similarity 5, member C	NM_153539|Fam5c|215378|family with sequence similarity 5, member C	BC099956|Fam5c|215378|family with sequence similarity 5, member C
mm9_v1_chr11_+_101489262_101489282	0.0708186	CDX1,2,4.p2	AK010457|Rdm1|66599|RAD52 motif 1	NM_025654|Rdm1|66599|RAD52 motif 1	BC055013|Rdm1|66599|RAD52 motif 1	AK003135|Rdm1|66599|RAD52 motif 1	BC026811|Rdm1|66599|RAD52 motif 1
mm9_v1_chrX_-_105011493_105011672	0.0705349	CDX1,2,4.p2	AK019383|2610002M06Rik|67028|RIKEN cDNA 2610002M06 gene	BC016070|2610002M06Rik|67028|RIKEN cDNA 2610002M06 gene	AK011297|2610002M06Rik|67028|RIKEN cDNA 2610002M06 gene	NM_025921|2610002M06Rik|67028|RIKEN cDNA 2610002M06 gene
mm9_v1_chr9_-_59373258_59373307	0.0699827	CDX1,2,4.p2	AK015202|Tmem202|73893|transmembrane protein 202	BC132482|Tmem202|73893|transmembrane protein 202	BC138196|Tmem202|73893|transmembrane protein 202	BC049695|Tmem202|73893|transmembrane protein 202	NM_178388|Tmem202|73893|transmembrane protein 202
mm9_v1_chr9_-_71743854_71743929	0.069961	CDX1,2,4.p2	AK135376|Tcf12|21406|transcription factor 12	AK132002|Tcf12|21406|transcription factor 12	AK133958|Tcf12|21406|transcription factor 12	AK078415|Tcf12|21406|transcription factor 12
mm9_v1_chr8_+_131256428_131256477	0.0699422	CDX1,2,4.p2	AK008343|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chr4_-_135609279_135609318	0.0696627	CDX1,2,4.p2	AK011211|Rpl11|67025|ribosomal protein L11	AK011800|Rpl11|67025|ribosomal protein L11	AK169053|Rpl11|67025|ribosomal protein L11	AK002998|Rpl11|67025|ribosomal protein L11	AK008422|Rpl11|67025|ribosomal protein L11	AK013923|Rpl11|67025|ribosomal protein L11	AK014593|Rpl11|67025|ribosomal protein L11	AK153486|Rpl11|67025|ribosomal protein L11	AK164445|Rpl11|67025|ribosomal protein L11	NM_025919|Rpl11|67025|ribosomal protein L11	AK088967|Rpl11|67025|ribosomal protein L11
mm9_v1_chr4_+_135476603_135476713	0.0695862	CDX1,2,4.p2	NM_024243|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK150890|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK151361|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK151879|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK170503|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK020610|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK002230|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK089958|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK151258|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK165604|Fuca1|71665|fucosidase, alpha-L- 1, tissue	BC003235|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK053323|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK151908|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK152070|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK150526|Fuca1|71665|fucosidase, alpha-L- 1, tissue
mm9_v1_chr8_-_19893102_19893120	0.0694696	CDX1,2,4.p2	AK030539|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK088897|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene
mm9_v1_chr11_-_5778204_5778260	0.0693603	CDX1,2,4.p2	BC003342|Pold2|18972|polymerase (DNA directed), delta 2, regulatory subunit	Z72486|Pold2|18972|polymerase (DNA directed), delta 2, regulatory subunit	AK013901|Pold2|18972|polymerase (DNA directed), delta 2, regulatory subunit	NM_008894|Pold2|18972|polymerase (DNA directed), delta 2, regulatory subunit
mm9_v1_chr2_-_50152180_50152256	0.0690716	CDX1,2,4.p2	BC002253|Mmadhc|109129|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	NM_133839|Mmadhc|109129|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
mm9_v1_chr1_-_152011986_152012077	0.0689455	CDX1,2,4.p2	
mm9_v1_chr18_+_50115628_50115725	0.0688557	CDX1,2,4.p2	AK046910|Dmxl1|240283|Dmx-like 1
mm9_v1_chr5_-_135382602_135382602	0.068685	CDX1,2,4.p2	AK007170|Wbscr28|76629|Williams-Beuren syndrome chromosome region 28 (human)	AY369079|Wbscr28|76629|Williams-Beuren syndrome chromosome region 28 (human)	AY369080|Wbscr28|76629|Williams-Beuren syndrome chromosome region 28 (human)	BC114542|Wbscr28|76629|Williams-Beuren syndrome chromosome region 28 (human)	NM_029681|Wbscr28|76629|Williams-Beuren syndrome chromosome region 28 (human)	NM_194065|Wbscr28|76629|Williams-Beuren syndrome chromosome region 28 (human)
mm9_v1_chr9_+_92144928_92145085	0.0685776	CDX1,2,4.p2	AK137603|Plscr1|22038|phospholipid scramblase 1	NM_011636|Plscr1|22038|phospholipid scramblase 1	AF159593|Plscr1|22038|phospholipid scramblase 1
mm9_v1_chr1_-_53353810_53353878	0.0682408	CDX1,2,4.p2	AK045010|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)	BC028939|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)	NM_153556|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)	AK140689|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)
mm9_v1_chr2_-_131000485_131000584	0.0682152	CDX1,2,4.p2	BC006046|Spef1|70997|sperm flagellar 1	AK047675|Spef1|70997|sperm flagellar 1	NM_027641|Spef1|70997|sperm flagellar 1	AY860964|Spef1|70997|sperm flagellar 1	AK016476|Spef1|70997|sperm flagellar 1
mm9_v1_chr4_-_43713678_43713678	0.0677023	CDX1,2,4.p2	BC046311|Olfr70|56014|olfactory receptor 70	NM_019485|Olfr70|56014|olfactory receptor 70
mm9_v1_chr7_+_63305516_63305584	0.0674871	CDX1,2,4.p2	NM_010418|Herc2|15204|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2
mm9_v1_chr7_-_25118944_25118983	0.0674305	CDX1,2,4.p2	BC125456|1700008P20Rik|69301|RIKEN cDNA 1700008P20 gene	BC125458|1700008P20Rik|69301|RIKEN cDNA 1700008P20 gene	AK005787|1700008P20Rik|69301|RIKEN cDNA 1700008P20 gene	NM_001163810|1700008P20Rik|69301|RIKEN cDNA 1700008P20 gene
mm9_v1_chr2_-_152169650_152169795	0.0671109	CDX1,2,4.p2	AK146421|Trib3|228775|tribbles homolog 3 (Drosophila)	AK089931|Trib3|228775|tribbles homolog 3 (Drosophila)	AK144752|Trib3|228775|tribbles homolog 3 (Drosophila)	AJ514260|Trib3|228775|tribbles homolog 3 (Drosophila)	AK146340|Trib3|228775|tribbles homolog 3 (Drosophila)	AK132257|Trib3|228775|tribbles homolog 3 (Drosophila)	AK159760|Trib3|228775|tribbles homolog 3 (Drosophila)	AF358868|Trib3|228775|tribbles homolog 3 (Drosophila)	BC012955|Trib3|228775|tribbles homolog 3 (Drosophila)	AK160099|Trib3|228775|tribbles homolog 3 (Drosophila)	NM_175093|Trib3|228775|tribbles homolog 3 (Drosophila)
mm9_v1_chr14_+_79826199_79826317	0.0670682	CDX1,2,4.p2	AK135854|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7	BC096019|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7	NM_001024135|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7
mm9_v1_chr14_-_56793432_56793435	0.0667525	CDX1,2,4.p2	NM_153052|Gzmn|245839|granzyme N	AB049454|Gzmn|245839|granzyme N	AB100426|Gzmn|245839|granzyme N
mm9_v1_chr4_-_133527108_133527157	0.0667399	CDX1,2,4.p2	AK205621|Dhdds|67422|dehydrodolichyl diphosphate synthase
mm9_v1_chr17_-_82137708_82137731	0.0663968	CDX1,2,4.p2	AF004666|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_001112798|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_011406|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	U70033|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	AK084813|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene	AK085810|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene
mm9_v1_chr10_+_79579271_79579362	0.066367	CDX1,2,4.p2	BC052379|Stk11|20869|serine/threonine kinase 11	NM_011492|Stk11|20869|serine/threonine kinase 11	AB015801|Stk11|20869|serine/threonine kinase 11	AF145287|Stk11|20869|serine/threonine kinase 11	AF151711|Stk11|20869|serine/threonine kinase 11	EU730638|Stk11|20869|serine/threonine kinase 11
mm9_v1_chr18_-_46901117_46901234	0.0660434	CDX1,2,4.p2	BC070470|Atg12|67526|autophagy-related 12 (yeast)	AB066216|Atg12|67526|autophagy-related 12 (yeast)	AK167027|Atg12|67526|autophagy-related 12 (yeast)	AK008698|Atg12|67526|autophagy-related 12 (yeast)	AK016474|Atg12|67526|autophagy-related 12 (yeast)	AK039278|Atg12|67526|autophagy-related 12 (yeast)	AK039546|Atg12|67526|autophagy-related 12 (yeast)	AK005405|Atg12|67526|autophagy-related 12 (yeast)	NM_026217|Atg12|67526|autophagy-related 12 (yeast)
mm9_v1_chr11_+_121021584_121021625	0.0657284	CDX1,2,4.p2	AF441863|Uts2r|217369|urotensin 2 receptor	NM_145440|Uts2r|217369|urotensin 2 receptor	BC125312|Uts2r|217369|urotensin 2 receptor	BC125318|Uts2r|217369|urotensin 2 receptor	AY065981|Uts2r|217369|urotensin 2 receptor
mm9_v1_chr9_+_39647020_39647020	0.0648165	CDX1,2,4.p2	NM_146614|Olfr971|258607|olfactory receptor 971
mm9_v1_chr19_+_34082779_34082838	0.0644605	CDX1,2,4.p2	AK037106|Lipk|240633|lipase, family member K	NM_172837|Lipk|240633|lipase, family member K	BC055815|Lipk|240633|lipase, family member K	AK162706|Lipk|240633|lipase, family member K	BC037229|Lipk|240633|lipase, family member K
mm9_v1_chr3_+_86790507_86790507	0.0644383	CDX1,2,4.p2	BC057149|Cd1d2|12480|CD1d2 antigen	NM_007640|Cd1d2|12480|CD1d2 antigen
mm9_v1_chr19_+_42245036_42245077	0.0640376	CDX1,2,4.p2	NM_001164531|Zfyve27|319740|zinc finger, FYVE domain containing 27	NM_177319|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr9_+_75623899_75624064	0.0640164	CDX1,2,4.p2	L41145|Bmp5|12160|bone morphogenetic protein 5	BC100751|Bmp5|12160|bone morphogenetic protein 5	BC100752|Bmp5|12160|bone morphogenetic protein 5	BC100753|Bmp5|12160|bone morphogenetic protein 5	BC100754|Bmp5|12160|bone morphogenetic protein 5	AK160412|Bmp5|12160|bone morphogenetic protein 5
mm9_v1_chr6_-_87338847_87338928	0.0638201	CDX1,2,4.p2	AK004474|Gkn3|68888|gastrokine 3	FN600638|Gkn3|68888|gastrokine 3	GU220566|Gkn3|68888|gastrokine 3	BC116955|Gkn3|68888|gastrokine 3	NM_026860|Gkn3|68888|gastrokine 3
mm9_v1_chr1_+_136007818_136007852	0.0638164	CDX1,2,4.p2	AK009012|Chit1|71884|chitinase 1 (chitotriosidase)	AY458654|Chit1|71884|chitinase 1 (chitotriosidase)	NM_027979|Chit1|71884|chitinase 1 (chitotriosidase)	BC138765|Chit1|71884|chitinase 1 (chitotriosidase)
mm9_v1_chr2_-_28438708_28438725	0.063747	CDX1,2,4.p2	BC027247|Gtf3c5|70239|general transcription factor IIIC, polypeptide 5	BC039171|Gtf3c5|70239|general transcription factor IIIC, polypeptide 5
mm9_v1_chr7_+_19705202_19705237	0.0631799	CDX1,2,4.p2	NM_175530|Fbxo46|243867|F-box protein 46	AK030147|Fbxo46|243867|F-box protein 46	BC049813|Fbxo46|243867|F-box protein 46
mm9_v1_chr7_+_135056028_135056042	0.0630702	CDX1,2,4.p2	AK029350|Myst1|67773|MYST histone acetyltransferase 1	AK146710|Myst1|67773|MYST histone acetyltransferase 1	AK003264|Myst1|67773|MYST histone acetyltransferase 1	AK132000|Myst1|67773|MYST histone acetyltransferase 1	NM_026370|Myst1|67773|MYST histone acetyltransferase 1	AK018002|Myst1|67773|MYST histone acetyltransferase 1	AK008418|Myst1|67773|MYST histone acetyltransferase 1	BC036284|Myst1|67773|MYST histone acetyltransferase 1
mm9_v1_chr1_+_133049757_133049907	0.0630569	CDX1,2,4.p2	AK170252|Eif2d|16865|eukaryotic translation initiation factor 2D	AK082748|Eif2d|16865|eukaryotic translation initiation factor 2D	AK030312|Eif2d|16865|eukaryotic translation initiation factor 2D	AK046539|Eif2d|16865|eukaryotic translation initiation factor 2D	AK166085|Eif2d|16865|eukaryotic translation initiation factor 2D	AK170448|Eif2d|16865|eukaryotic translation initiation factor 2D	AK139052|Eif2d|16865|eukaryotic translation initiation factor 2D	NM_001136070|Eif2d|16865|eukaryotic translation initiation factor 2D	NM_010709|Eif2d|16865|eukaryotic translation initiation factor 2D	AK078472|Eif2d|16865|eukaryotic translation initiation factor 2D	BC023709|Eif2d|16865|eukaryotic translation initiation factor 2D	AK036154|Eif2d|16865|eukaryotic translation initiation factor 2D	AK047005|Eif2d|16865|eukaryotic translation initiation factor 2D	AK167980|Eif2d|16865|eukaryotic translation initiation factor 2D	AK161269|Eif2d|16865|eukaryotic translation initiation factor 2D	AK171115|Eif2d|16865|eukaryotic translation initiation factor 2D	AK034115|Eif2d|16865|eukaryotic translation initiation factor 2D	AK168120|Eif2d|16865|eukaryotic translation initiation factor 2D	AK083638|Eif2d|16865|eukaryotic translation initiation factor 2D	BC025036|Eif2d|16865|eukaryotic translation initiation factor 2D	AK193013|Eif2d|16865|eukaryotic translation initiation factor 2D	U58337|Eif2d|16865|eukaryotic translation initiation factor 2D
mm9_v1_chr17_+_18024787_18024817	0.0629173	CDX1,2,4.p2	AK054286|Fpr2|14289|formyl peptide receptor 2	NM_008039|Fpr2|14289|formyl peptide receptor 2	U78299|Fpr3|14294|formyl peptide receptor 3
mm9_v1_chr2_-_154198449_154198468	0.0626931	CDX1,2,4.p2	AK010081|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1	AK010097|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1	NM_025876|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1	AK088517|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1	AK136570|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1
mm9_v1_chr11_+_108543922_108543950	0.062525	CDX1,2,4.p2	NM_145688|Ccdc46|76380|coiled-coil domain containing 46	AK005611|Ccdc46|76380|coiled-coil domain containing 46	NM_029586|Ccdc46|76380|coiled-coil domain containing 46	AK006504|Ccdc46|76380|coiled-coil domain containing 46	BC048677|Ccdc46|76380|coiled-coil domain containing 46
mm9_v1_chr16_+_96366980_96367038	0.0624236	CDX1,2,4.p2	AK084688|Wrb|71446|tryptophan rich basic protein	AK172079|Wrb|71446|tryptophan rich basic protein	BC031769|Wrb|71446|tryptophan rich basic protein	NM_207301|Wrb|71446|tryptophan rich basic protein	AK021091|Wrb|71446|tryptophan rich basic protein
mm9_v1_chr15_-_75672300_75672387	0.0621143	CDX1,2,4.p2	BC060682|Zc3h3|223642|zinc finger CCCH type containing 3	AJ516034|Zc3h3|223642|zinc finger CCCH type containing 3	BC111448|Zc3h3|223642|zinc finger CCCH type containing 3	NM_172121|Zc3h3|223642|zinc finger CCCH type containing 3	AK138281|Zc3h3|223642|zinc finger CCCH type containing 3
mm9_v1_chr15_+_76124863_76124863	0.0619221	CDX1,2,4.p2	GU144514|Gm10345|100041269|predicted gene 10345	NM_001195537|Gm10345|100041269|predicted gene 10345
mm9_v1_chr11_-_17111582_17111598	0.0617679	CDX1,2,4.p2	AK146152|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK168177|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	NM_025443|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)
mm9_v1_chr9_+_120001250_120001250	0.0615703	CDX1,2,4.p2	NM_007720|Ccr8|12776|chemokine (C-C motif) receptor 8	Z98205|Ccr8|12776|chemokine (C-C motif) receptor 8
mm9_v1_chr10_-_31410391_31410392	0.0615166	CDX1,2,4.p2	AK018248|Nkain2|432450|Na+/K+ transporting ATPase interacting 2
mm9_v1_chr2_+_24008680_24008706	0.0613792	CDX1,2,4.p2	AK009787|Il1f8|69677|interleukin 1 family, member 8	BC119517|Il1f8|69677|interleukin 1 family, member 8	NM_027163|Il1f8|69677|interleukin 1 family, member 8	AY071842|Il1f8|69677|interleukin 1 family, member 8
mm9_v1_chr6_+_89664196_89664196	0.0612392	CDX1,2,4.p2	NM_053228|Vmn1r40|113855|vomeronasal 1 receptor 40
mm9_v1_chr13_-_61037894_61037926	0.0609357	CDX1,2,4.p2	AY034577|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha	X15591|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha	BC028437|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha	AK018801|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha	AK132290|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha	AK167433|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha	AK167664|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha	AK005471|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha	NM_001145799|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha
mm9_v1_chr9_-_24913234_24913238	0.0609253	CDX1,2,4.p2	AK208093|Herpud2|80517|HERPUD family member 2
mm9_v1_chr10_+_93977597_93977699	0.0608335	CDX1,2,4.p2	NM_172051|Tmcc3|319880|transmembrane and coiled coil domains 3	AK132545|Tmcc3|319880|transmembrane and coiled coil domains 3	BC095951|Tmcc3|319880|transmembrane and coiled coil domains 3	AK083129|Tmcc3|319880|transmembrane and coiled coil domains 3
mm9_v1_chr13_+_34967355_34967379	0.0607672	CDX1,2,4.p2	NM_013830|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	AK165391|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm9_v1_chr11_-_116712559_116712636	0.0607053	CDX1,2,4.p2	AF250133|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr19_-_6128133_6128278	0.0605366	CDX1,2,4.p2	BC016091|Snx15|69024|sorting nexin 15	NM_026912|Snx15|69024|sorting nexin 15
mm9_v1_chr1_-_66981900_66981939	0.0604903	CDX1,2,4.p2	BC059087|Myl1|17901|myosin, light polypeptide 1	AK009938|Myl1|17901|myosin, light polypeptide 1	NM_001113387|Myl1|17901|myosin, light polypeptide 1
mm9_v1_chr4_+_12067263_12067419	0.0602699	CDX1,2,4.p2	NM_028226|Rbm12b|72397|RNA binding motif protein 12B	AK030861|Rbm12b|72397|RNA binding motif protein 12B
mm9_v1_chr11_+_79997341_79997544	0.0599037	CDX1,2,4.p2	AK010429|Rnf135|71956|ring finger protein 135	NM_028019|Rnf135|71956|ring finger protein 135	AK150921|Rnf135|71956|ring finger protein 135	BC132307|Rnf135|71956|ring finger protein 135	BC138303|Rnf135|71956|ring finger protein 135	BC145236|Rnf135|71956|ring finger protein 135	AK152096|Rnf135|71956|ring finger protein 135	BC096385|Rnf135|71956|ring finger protein 135	AK002781|Rnf135|71956|ring finger protein 135
mm9_v1_chr10_+_61245998_61246044	0.0597487	CDX1,2,4.p2	
mm9_v1_chr12_-_33777667_33777744	0.059655	CDX1,2,4.p2	BC138911|Cdhr3|68764|cadherin-related family member 3	AK047666|Cdhr3|68764|cadherin-related family member 3	AK049806|Cdhr3|68764|cadherin-related family member 3	NM_001024478|Cdhr3|68764|cadherin-related family member 3
mm9_v1_chr8_+_74764023_74764030	0.059232	CDX1,2,4.p2	M62419|Ap1m1|11767|adaptor-related protein complex AP-1, mu subunit 1	NM_007456|Ap1m1|11767|adaptor-related protein complex AP-1, mu subunit 1
mm9_v1_chr8_+_81033220_81033473	0.0582032	CDX1,2,4.p2	NM_029736|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK160402|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK079901|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK152752|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK152849|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK010834|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK165983|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK040517|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	BC116666|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	BC116717|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825926|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825927|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825928|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm9_v1_chr4_+_143379236_143379267	0.0581471	CDX1,2,4.p2	NM_001007077|Gm13023|194227|predicted gene 13023	AK135972|Gm13023|194227|predicted gene 13023	BC084594|Gm13023|194227|predicted gene 13023
mm9_v1_chr2_-_112099427_112099447	0.0580674	CDX1,2,4.p2	BC125332|BC125332|213765|cDNA sequence BC125332	BC125334|BC125332|213765|cDNA sequence BC125332	AK077049|BC125332|213765|cDNA sequence BC125332	NM_172521|BC125332|213765|cDNA sequence BC125332
mm9_v1_chr5_+_32761426_32761470	0.0580498	CDX1,2,4.p2	AK166168|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK166623|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK168141|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr4_-_55545211_55545278	0.0576337	CDX1,2,4.p2	BC010301|Klf4|16600|Kruppel-like factor 4 (gut)
mm9_v1_chr5_+_137170046_137170046	0.0576025	CDX1,2,4.p2	NM_001085387|Myl10|59310|myosin, light chain 10, regulatory	X65979|Myl10|59310|myosin, light chain 10, regulatory
mm9_v1_chr7_-_94641859_94642021	0.0566339	CDX1,2,4.p2	M26729|Tyr|22173|tyrosinase	AK148341|Tyr|22173|tyrosinase	BC079678|Tyr|22173|tyrosinase	AK148432|Tyr|22173|tyrosinase	D00440|Tyr|22173|tyrosinase	M24560|Tyr|22173|tyrosinase	NM_011661|Tyr|22173|tyrosinase	D00131|Tyr|22173|tyrosinase	AK148172|Tyr|22173|tyrosinase	AK148357|Tyr|22173|tyrosinase	AK014619|Tyr|22173|tyrosinase	AY526904|Tyr|22173|tyrosinase	X12782|Tyr|22173|tyrosinase	M20234|Tyr|22173|tyrosinase
mm9_v1_chrX_+_66015013_66015108	0.0564356	CDX1,2,4.p2	BC099411|Fmr1nb|207854|fragile X mental retardation 1 neighbor	NM_001166619|Fmr1nb|207854|fragile X mental retardation 1 neighbor	NM_001166620|Fmr1nb|207854|fragile X mental retardation 1 neighbor	NM_174993|Fmr1nb|207854|fragile X mental retardation 1 neighbor	BC138087|Fmr1nb|207854|fragile X mental retardation 1 neighbor	BC145139|Fmr1nb|207854|fragile X mental retardation 1 neighbor	BC145140|Fmr1nb|207854|fragile X mental retardation 1 neighbor	BC171922|Fmr1nb|207854|fragile X mental retardation 1 neighbor	BC171923|Fmr1nb|207854|fragile X mental retardation 1 neighbor	BC171947|Fmr1nb|207854|fragile X mental retardation 1 neighbor	BC171948|Fmr1nb|207854|fragile X mental retardation 1 neighbor	AK076190|Fmr1nb|207854|fragile X mental retardation 1 neighbor	AY214130|Fmr1nb|207854|fragile X mental retardation 1 neighbor
mm9_v1_chr5_+_74042618_74042624	0.0561612	CDX1,2,4.p2	NM_178387|Spata18|73472|spermatogenesis associated 18	BC050799|Spata18|73472|spermatogenesis associated 18
mm9_v1_chr7_+_27320083_27320085	0.0560473	CDX1,2,4.p2	NM_001048219|Nlrp9a|233001|NLR family, pyrin domain containing 9A	NM_001048220|Nlrp9a|233001|NLR family, pyrin domain containing 9A	AK139925|Nlrp9a|233001|NLR family, pyrin domain containing 9A	AK145355|Nlrp9a|233001|NLR family, pyrin domain containing 9A
mm9_v1_chr11_+_29641691_29641734	0.0559367	CDX1,2,4.p2	AK003859|Rtn4|68585|reticulon 4
mm9_v1_chr18_+_4375583_4375596	0.0555938	CDX1,2,4.p2	AK011546|Mtpap|67440|mitochondrial poly(A) polymerase	AK036760|Mtpap|67440|mitochondrial poly(A) polymerase	NM_026157|Mtpap|67440|mitochondrial poly(A) polymerase	AK154747|Mtpap|67440|mitochondrial poly(A) polymerase	AK166038|Mtpap|67440|mitochondrial poly(A) polymerase
mm9_v1_chr18_+_37649118_37649272	0.0555579	CDX1,2,4.p2	AK140341|Pcdhb18|93889|protocadherin beta 18	NM_053143|Pcdhb18|93889|protocadherin beta 18	BC099958|Pcdhb18|93889|protocadherin beta 18	AY013779|Pcdhb18|93889|protocadherin beta 18
mm9_v1_chrX_-_7770637_7770637	0.055411	CDX1,2,4.p2	BC004703|Ebp|13595|phenylalkylamine Ca2+ antagonist (emopamil) binding protein	NM_007898|Ebp|13595|phenylalkylamine Ca2+ antagonist (emopamil) binding protein
mm9_v1_chr7_-_59117613_59117656	0.054951	CDX1,2,4.p2	NM_001115087|Fancf|100040608|Fanconi anemia, complementation group F
mm9_v1_chr2_-_26236126_26236172	0.0549086	CDX1,2,4.p2	BC018169|Snapc4|227644|small nuclear RNA activating complex, polypeptide 4	AK077522|Snapc4|227644|small nuclear RNA activating complex, polypeptide 4	BC057031|Snapc4|227644|small nuclear RNA activating complex, polypeptide 4	AK136996|Snapc4|227644|small nuclear RNA activating complex, polypeptide 4	AK052107|Snapc4|227644|small nuclear RNA activating complex, polypeptide 4	NM_172339|Snapc4|227644|small nuclear RNA activating complex, polypeptide 4
mm9_v1_chr3_-_127483385_127483450	0.0548082	CDX1,2,4.p2	AK018401|Alpk1|71481|alpha-kinase 1	AK041315|Alpk1|71481|alpha-kinase 1	AK173191|Alpk1|71481|alpha-kinase 1	NM_027808|Alpk1|71481|alpha-kinase 1
mm9_v1_chr3_-_107949028_107949092	0.0547564	CDX1,2,4.p2	AK077490|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	NM_010306|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	BC020009|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK169285|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK004566|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3
mm9_v1_chr19_+_42245078_42245100	0.0546494	CDX1,2,4.p2	BC024801|Zfyve27|319740|zinc finger, FYVE domain containing 27	AK159065|Zfyve27|319740|zinc finger, FYVE domain containing 27	AK170237|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr15_-_97551580_97551592	0.0543239	CDX1,2,4.p2	M95545|Endou|19011|endonuclease, polyU-specific	NM_008902|Endou|19011|endonuclease, polyU-specific	AK169457|Endou|19011|endonuclease, polyU-specific
mm9_v1_chr8_+_47095955_47095964	0.0542926	CDX1,2,4.p2	BC051150|Lrp2bp|67620|Lrp2 binding protein	NM_026278|Lrp2bp|67620|Lrp2 binding protein	AK007202|Lrp2bp|67620|Lrp2 binding protein	AK015594|Lrp2bp|67620|Lrp2 binding protein
mm9_v1_chrX_+_21061748_21061785	0.054044	CDX1,2,4.p2	AK140941|Agtr2|11609|angiotensin II receptor, type 2	AK086334|Agtr2|11609|angiotensin II receptor, type 2	NM_007429|Agtr2|11609|angiotensin II receptor, type 2	L32840|Agtr2|11609|angiotensin II receptor, type 2	S67465|Agtr2|11609|angiotensin II receptor, type 2	U04828|Agtr2|11609|angiotensin II receptor, type 2
mm9_v1_chr7_-_114146118_114146118	0.0531446	CDX1,2,4.p2	NM_010983|Olfr2|18317|olfactory receptor 2	S73844|Olfr2|18317|olfactory receptor 2
mm9_v1_chr14_-_70999625_70999666	0.052884	CDX1,2,4.p2	NM_194345|Fam160b2|239170|family with sequence similarity 160, member B2	BC050861|Fam160b2|239170|family with sequence similarity 160, member B2
mm9_v1_chr12_+_73542852_73542935	0.0528401	CDX1,2,4.p2	AK029802|Lrrc9|78257|leucine rich repeat containing 9	NM_001142728|Lrrc9|78257|leucine rich repeat containing 9	NM_030070|Lrrc9|78257|leucine rich repeat containing 9	AK019545|Lrrc9|78257|leucine rich repeat containing 9	AK015292|Lrrc9|78257|leucine rich repeat containing 9
mm9_v1_chr3_-_53267127_53267244	0.0528358	CDX1,2,4.p2	AK133986|Nhlrc3|212114|NHL repeat containing 3	BC087903|Nhlrc3|212114|NHL repeat containing 3	BC107356|Nhlrc3|212114|NHL repeat containing 3	AK029465|Nhlrc3|212114|NHL repeat containing 3	AK033167|Nhlrc3|212114|NHL repeat containing 3	NM_172501|Nhlrc3|212114|NHL repeat containing 3	AK162824|Nhlrc3|212114|NHL repeat containing 3	AK220477|Nhlrc3|212114|NHL repeat containing 3
mm9_v1_chr11_-_101139357_101139490	0.0527536	CDX1,2,4.p2	
mm9_v1_chr1_+_34906775_34906890	0.052273	CDX1,2,4.p2	NM_145516|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK148653|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	BC057994|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK039771|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK166091|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AF189817|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK149868|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK150074|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK082118|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2	AK179998|Plekhb2|226971|pleckstrin homology domain containing, family B (evectins) member 2
mm9_v1_chr9_-_44550762_44550970	0.0519745	CDX1,2,4.p2	AK182325|Arcn1|213827|archain 1	BC008236|Arcn1|213827|archain 1
mm9_v1_chr10_+_80599005_80599015	0.0518666	CDX1,2,4.p2	BC024815|Zbtb7a|16969|zinc finger and BTB domain containing 7a	NM_010731|Zbtb7a|16969|zinc finger and BTB domain containing 7a
mm9_v1_chr19_-_41151561_41151602	0.0518444	CDX1,2,4.p2	BC060980|Opalin|226115|oligodendrocytic myelin paranodal and inner loop protein	AK140031|Opalin|226115|oligodendrocytic myelin paranodal and inner loop protein	NM_153520|Opalin|226115|oligodendrocytic myelin paranodal and inner loop protein
mm9_v1_chr1_-_93308194_93308203	0.0515442	CDX1,2,4.p2	
mm9_v1_chr5_-_130214385_130214385	0.0512731	CDX1,2,4.p2	NM_028826|Sept14|74222|septin 14
mm9_v1_chr5_-_92757021_92757142	0.0509584	CDX1,2,4.p2	AK042480|Cxcl9|17329|chemokine (C-X-C motif) ligand 9	CT010194|Cxcl9|17329|chemokine (C-X-C motif) ligand 9	BC003343|Cxcl9|17329|chemokine (C-X-C motif) ligand 9	AK157109|Cxcl9|17329|chemokine (C-X-C motif) ligand 9	AK042017|Cxcl9|17329|chemokine (C-X-C motif) ligand 9	AK156012|Cxcl9|17329|chemokine (C-X-C motif) ligand 9	AK156029|Cxcl9|17329|chemokine (C-X-C motif) ligand 9	AK156453|Cxcl9|17329|chemokine (C-X-C motif) ligand 9	AK157118|Cxcl9|17329|chemokine (C-X-C motif) ligand 9	NM_008599|Cxcl9|17329|chemokine (C-X-C motif) ligand 9	M34815|Cxcl9|17329|chemokine (C-X-C motif) ligand 9
mm9_v1_chr5_+_138462503_138462503	0.0508439	CDX1,2,4.p2	AJ245454|Smok3a|545814|sperm motility kinase 3A	NM_001168602|Smok3a|545814|sperm motility kinase 3A
mm9_v1_chr5_+_23907911_23908059	0.0508131	CDX1,2,4.p2	AK212771|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8
mm9_v1_chr7_-_25084567_25084655	0.0507519	CDX1,2,4.p2	NM_009561|Zfp61|22719|zinc finger protein 61	BC006618|Zfp61|22719|zinc finger protein 61
mm9_v1_chr11_-_120298946_120299015	0.0506436	CDX1,2,4.p2	BC065156|Nploc4|217365|nuclear protein localization 4 homolog (S. cerevisiae)	AK149823|Nploc4|217365|nuclear protein localization 4 homolog (S. cerevisiae)	AK129375|Nploc4|217365|nuclear protein localization 4 homolog (S. cerevisiae)	AK141998|Nploc4|217365|nuclear protein localization 4 homolog (S. cerevisiae)	AK149912|Nploc4|217365|nuclear protein localization 4 homolog (S. cerevisiae)	NM_001195023|Nploc4|217365|nuclear protein localization 4 homolog (S. cerevisiae)	NM_199469|Nploc4|217365|nuclear protein localization 4 homolog (S. cerevisiae)
mm9_v1_chr11_+_99734702_99734753	0.0502388	CDX1,2,4.p2	NM_015741|Krtap9-1|16705|keratin associated protein 9-1	BC116210|Krtap9-1|16705|keratin associated protein 9-1
mm9_v1_chr1_-_184271729_184271762	0.0501972	CDX1,2,4.p2	BC094542|Fbxo28|67948|F-box protein 28	NM_175127|Fbxo28|67948|F-box protein 28	AK076211|Fbxo28|67948|F-box protein 28	AK077653|Fbxo28|67948|F-box protein 28
mm9_v1_chrX_-_75336699_75336712	0.0500342	CDX1,2,4.p2	BC125514|Obp1a|18249|odorant binding protein Ia	BC125516|Obp1a|18249|odorant binding protein Ia	AK017455|Obp1a|18249|odorant binding protein Ia	NM_008754|Obp1a|18249|odorant binding protein Ia
mm9_v1_chr7_+_127883556_127883560	0.0499943	CDX1,2,4.p2	AK086942|Vwa3a|233813|von Willebrand factor A domain containing 3A	AK136898|Vwa3a|233813|von Willebrand factor A domain containing 3A
mm9_v1_chr4_+_123465116_123465145	0.0498917	CDX1,2,4.p2	AK078969|Rhbdl2|230726|rhomboid, veinlet-like 2 (Drosophila)	NM_183163|Rhbdl2|230726|rhomboid, veinlet-like 2 (Drosophila)	BC115494|Rhbdl2|230726|rhomboid, veinlet-like 2 (Drosophila)	BC115495|Rhbdl2|230726|rhomboid, veinlet-like 2 (Drosophila)
mm9_v1_chrX_+_131968373_131968386	0.0497825	CDX1,2,4.p2	AK029697|Gm5128|331529|predicted gene 5128	NM_183320|Gm5128|331529|predicted gene 5128	BC115710|Gm5128|331529|predicted gene 5128
mm9_v1_chrX_+_96133407_96133568	0.0497098	CDX1,2,4.p2	AK045453|Yipf6|77929|Yip1 domain family, member 6	BC048712|Yipf6|77929|Yip1 domain family, member 6	AK079683|Yipf6|77929|Yip1 domain family, member 6	AK020780|Yipf6|77929|Yip1 domain family, member 6	AK143152|Yipf6|77929|Yip1 domain family, member 6
mm9_v1_chr4_+_154927385_154927543	0.0495687	CDX1,2,4.p2	BC003294|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr13_+_55254169_55254235	0.0487764	CDX1,2,4.p2	AK084850|Fgfr4|14186|fibroblast growth factor receptor 4	NM_008011|Fgfr4|14186|fibroblast growth factor receptor 4	AK085723|Fgfr4|14186|fibroblast growth factor receptor 4	X59927|Fgfr4|14186|fibroblast growth factor receptor 4
mm9_v1_chr4_-_135609269_135609274	0.0483527	CDX1,2,4.p2	BC025077|Rpl11|67025|ribosomal protein L11
mm9_v1_chr6_-_113550646_113550708	0.0481172	CDX1,2,4.p2	AK016461|4931417G12Rik|70979|RIKEN cDNA 4931417G12 gene	BC049660|4931417G12Rik|70979|RIKEN cDNA 4931417G12 gene	NM_027633|4931417G12Rik|70979|RIKEN cDNA 4931417G12 gene
mm9_v1_chr17_-_6317399_6317473	0.0480914	CDX1,2,4.p2	EF110999|Dynlt1c|100040563|dynein light chain Tctex-type 1C	AK030569|Dynlt1a|100310872|dynein light chain Tctex-type 1A	BC087868|Dynlt1a|100310872|dynein light chain Tctex-type 1A	NM_001166629|Dynlt1a|100310872|dynein light chain Tctex-type 1A
mm9_v1_chr3_-_94240497_94240537	0.0474978	CDX1,2,4.p2	AB045835|Oaz3|53814|ornithine decarboxylase antizyme 3	BC119339|Oaz3|53814|ornithine decarboxylase antizyme 3	BC119341|Oaz3|53814|ornithine decarboxylase antizyme 3	AK006116|Oaz3|53814|ornithine decarboxylase antizyme 3	AK006634|Oaz3|53814|ornithine decarboxylase antizyme 3	AK076942|Oaz3|53814|ornithine decarboxylase antizyme 3	AF175297|Oaz3|53814|ornithine decarboxylase antizyme 3	NM_016901|Oaz3|53814|ornithine decarboxylase antizyme 3
mm9_v1_chr5_-_147396814_147396814	0.0474427	CDX1,2,4.p2	AK140298|Gpr12|14738|G-protein coupled receptor 12	NM_001010941|Gpr12|14738|G-protein coupled receptor 12
mm9_v1_chr7_+_25688004_25688107	0.0472427	CDX1,2,4.p2	NM_001130150|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	NM_001130151|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	NM_001130153|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	NM_008488|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	AK043027|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	AK012156|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	AK051518|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	AK040093|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	AK172354|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	AK157056|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	U58203|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	AK162482|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	AK131181|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr6_+_146798631_146798631	0.0471744	CDX1,2,4.p2	AK006257|1700023A16Rik|69371|RIKEN cDNA 1700023A16 gene	NM_027059|1700023A16Rik|69371|RIKEN cDNA 1700023A16 gene
mm9_v1_chr3_+_97734095_97734095	0.0471617	CDX1,2,4.p2	AK142329|Gm5544|433632|predicted gene 5544	NM_001033779|Gm5544|433632|predicted gene 5544
mm9_v1_chrX_+_131836850_131836854	0.0470664	CDX1,2,4.p2	AY004873|Pramel3|83565|preferentially expressed antigen in melanoma-like 3	NM_031390|Pramel3|83565|preferentially expressed antigen in melanoma-like 3
mm9_v1_chr4_-_133801438_133801522	0.0468095	CDX1,2,4.p2	AK156931|Zfp593|68040|zinc finger protein 593	BC003465|Zfp593|68040|zinc finger protein 593	AK014081|Zfp593|68040|zinc finger protein 593	AK133585|Zfp593|68040|zinc finger protein 593	AK005247|Zfp593|68040|zinc finger protein 593	NM_024215|Zfp593|68040|zinc finger protein 593
mm9_v1_chr19_+_9052495_9052648	0.0464797	CDX1,2,4.p2	AK011087|Eef1g|67160|eukaryotic translation elongation factor 1 gamma
mm9_v1_chr8_+_47637408_47637440	0.0458325	CDX1,2,4.p2	BC094675|Mlf1ip|71876|myeloid leukemia factor 1 interacting protein	AK006479|Mlf1ip|71876|myeloid leukemia factor 1 interacting protein	AK050386|Mlf1ip|71876|myeloid leukemia factor 1 interacting protein	BC117784|Mlf1ip|71876|myeloid leukemia factor 1 interacting protein	BC117785|Mlf1ip|71876|myeloid leukemia factor 1 interacting protein	NM_027973|Mlf1ip|71876|myeloid leukemia factor 1 interacting protein	AK081703|Mlf1ip|71876|myeloid leukemia factor 1 interacting protein	AY366362|Mlf1ip|71876|myeloid leukemia factor 1 interacting protein
mm9_v1_chr2_+_113167862_113167938	0.045618	CDX1,2,4.p2	NM_001043322|Fmn1|14260|formin 1	NM_010230|Fmn1|14260|formin 1	AK135758|Fmn1|14260|formin 1	X53599|Fmn1|14260|formin 1
mm9_v1_chr8_+_119467267_119467410	0.0444759	CDX1,2,4.p2	AX775769|Atmin|234776|ATM interactor	NM_177700|Atmin|234776|ATM interactor	BC060631|Atmin|234776|ATM interactor	BC027752|Atmin|234776|ATM interactor	AK122281|Atmin|234776|ATM interactor
mm9_v1_chr13_+_95645581_95645581	0.04427	CDX1,2,4.p2	NM_011021|Otp|18420|orthopedia homolog (Drosophila)	Y10413|Otp|18420|orthopedia homolog (Drosophila)
mm9_v1_chr17_-_37727295_37727325	0.0436556	CDX1,2,4.p2	NM_146287|Olfr114|258284|olfactory receptor 114	BC132209|Olfr114|258284|olfactory receptor 114	BC132573|Olfr114|258284|olfactory receptor 114
mm9_v1_chr13_+_27437541_27437557	0.0432833	CDX1,2,4.p2	AK131668|Prl8a2|13529|prolactin family 8, subfamily a, member 2	AK146049|Prl8a2|13529|prolactin family 8, subfamily a, member 2	BC061150|Prl8a2|13529|prolactin family 8, subfamily a, member 2	AF015729|Prl8a2|13529|prolactin family 8, subfamily a, member 2	AF011385|Prl8a2|13529|prolactin family 8, subfamily a, member 2	NM_010088|Prl8a2|13529|prolactin family 8, subfamily a, member 2
mm9_v1_chr7_+_25421586_25421602	0.043107	CDX1,2,4.p2	BC003749|Lypd3|72434|Ly6/Plaur domain containing 3	BC016549|Lypd3|72434|Ly6/Plaur domain containing 3	NM_133743|Lypd3|72434|Ly6/Plaur domain containing 3
mm9_v1_chr17_-_37026989_37027069	0.0430375	CDX1,2,4.p2	AK136498|Trim40|195359|tripartite motif-containing 40	NM_001033235|Trim40|195359|tripartite motif-containing 40	NM_001172168|Trim40|195359|tripartite motif-containing 40
mm9_v1_chr6_-_129593305_129593354	0.0428019	CDX1,2,4.p2	AF195779|Klrc3|58179|killer cell lectin-like receptor subfamily C, member 3	BC130234|Klrc3|58179|killer cell lectin-like receptor subfamily C, member 3	NM_021378|Klrc3|58179|killer cell lectin-like receptor subfamily C, member 3	BC144931|Klrc3|58179|killer cell lectin-like receptor subfamily C, member 3
mm9_v1_chr3_+_92054568_92054677	0.0428004	CDX1,2,4.p2	NM_001164787|Sprr2a2|100303744|small proline-rich protein 2A2	NM_011468|Sprr2a1|20755|small proline-rich protein 2A1	AK003391|Sprr2a1|20755|small proline-rich protein 2A1	AK007633|Sprr2a1|20755|small proline-rich protein 2A1	AK008887|Sprr2a1|20755|small proline-rich protein 2A1	AK147183|Sprr2a1|20755|small proline-rich protein 2A1	AK009238|Sprr2a1|20755|small proline-rich protein 2A1	AK168529|Sprr2a1|20755|small proline-rich protein 2A1	AY158986|Sprr2a1|20755|small proline-rich protein 2A1	AK008631|Sprr2a1|20755|small proline-rich protein 2A1	AK009790|Sprr2a1|20755|small proline-rich protein 2A1	BC010818|Sprr2a2|100303744|small proline-rich protein 2A2	AK007928|Sprr2a2|100303744|small proline-rich protein 2A2
mm9_v1_chr5_+_89012547_89012592	0.0427732	CDX1,2,4.p2	AK018184|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr17_+_35109647_35109778	0.0424948	CDX1,2,4.p2	NM_013558|Hspa1l|15482|heat shock protein 1-like	D85732|Hspa1l|15482|heat shock protein 1-like	BC129895|Hspa1l|15482|heat shock protein 1-like	BC129894|Hspa1l|15482|heat shock protein 1-like
mm9_v1_chr2_+_162843166_162843193	0.0424196	CDX1,2,4.p2	AK167194|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)
mm9_v1_chr14_-_51363998_51363998	0.0415839	CDX1,2,4.p2	NM_020288|Olfr749|56858|olfactory receptor 749
mm9_v1_chr2_-_91023004_91023063	0.0414313	CDX1,2,4.p2	BC063386|Madd|228355|MAP-kinase activating death domain	AK122257|Madd|228355|MAP-kinase activating death domain
mm9_v1_chr2_+_144381976_144382053	0.0412268	CDX1,2,4.p2	AK158398|Sec23b|27054|SEC23B (S. cerevisiae)	AK153214|Sec23b|27054|SEC23B (S. cerevisiae)	AK146083|Sec23b|27054|SEC23B (S. cerevisiae)	BC011160|Sec23b|27054|SEC23B (S. cerevisiae)	NM_019787|Sec23b|27054|SEC23B (S. cerevisiae)	AK014597|Sec23b|27054|SEC23B (S. cerevisiae)	AK166330|Sec23b|27054|SEC23B (S. cerevisiae)	AK155168|Sec23b|27054|SEC23B (S. cerevisiae)	AK149693|Sec23b|27054|SEC23B (S. cerevisiae)	AK167382|Sec23b|27054|SEC23B (S. cerevisiae)	AK167732|Sec23b|27054|SEC23B (S. cerevisiae)	AK171597|Sec23b|27054|SEC23B (S. cerevisiae)	BC005464|Sec23b|27054|SEC23B (S. cerevisiae)	AK139729|Sec23b|27054|SEC23B (S. cerevisiae)
mm9_v1_chr19_-_56464434_56464529	0.0409864	CDX1,2,4.p2	BC145109|Nrap|18175|nebulin-related anchoring protein	AK138925|Nrap|18175|nebulin-related anchoring protein	AY177622|Nrap|18175|nebulin-related anchoring protein	AY177623|Nrap|18175|nebulin-related anchoring protein	NM_008733|Nrap|18175|nebulin-related anchoring protein	NM_198059|Nrap|18175|nebulin-related anchoring protein
mm9_v1_chrX_+_20374922_20374939	0.0406675	CDX1,2,4.p2	AK034861|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog
mm9_v1_chr2_+_68973856_68973946	0.0399894	CDX1,2,4.p2	NM_181547|Nostrin|329416|nitric oxide synthase trafficker	AK052926|Nostrin|329416|nitric oxide synthase trafficker	BC069942|Nostrin|329416|nitric oxide synthase trafficker	AY280963|Nostrin|329416|nitric oxide synthase trafficker	AJ564264|Nostrin|329416|nitric oxide synthase trafficker
mm9_v1_chr19_+_5026004_5026105	0.0397882	CDX1,2,4.p2	X86682|Slc29a2|13340|solute carrier family 29 (nucleoside transporters), member 2
mm9_v1_chr13_-_53076251_53076471	0.0396117	CDX1,2,4.p2	BC031377|Nfil3|18030|nuclear factor, interleukin 3, regulated	AK087541|Nfil3|18030|nuclear factor, interleukin 3, regulated	NM_017373|Nfil3|18030|nuclear factor, interleukin 3, regulated
mm9_v1_chr7_+_17545027_17545143	0.0395816	CDX1,2,4.p2	AK079661|Pnmal1|71691|PNMA-like 1	BC048228|Pnmal1|71691|PNMA-like 1	NM_001007569|Pnmal1|71691|PNMA-like 1
mm9_v1_chr8_-_72974533_72974552	0.0395045	CDX1,2,4.p2	AK188349|Klhl26|234378|kelch-like 26 (Drosophila)
mm9_v1_chr3_+_93272675_93272675	0.0394631	CDX1,2,4.p2	AK017244|Tchhl1|71325|trichohyalin-like 1	NM_027762|Tchhl1|71325|trichohyalin-like 1
mm9_v1_chr10_+_12728252_12728328	0.039203	CDX1,2,4.p2	NM_175102|Sf3b5|66125|splicing factor 3b, subunit 5	BC006603|Sf3b5|66125|splicing factor 3b, subunit 5	AK010348|Sf3b5|66125|splicing factor 3b, subunit 5	AK003475|Sf3b5|66125|splicing factor 3b, subunit 5	AK009874|Sf3b5|66125|splicing factor 3b, subunit 5
mm9_v1_chr5_-_69933835_69933870	0.0390326	CDX1,2,4.p2	AK009405|Yipf7|75581|Yip1 domain family, member 7	BC089576|Yipf7|75581|Yip1 domain family, member 7	NM_023784|Yipf7|75581|Yip1 domain family, member 7
mm9_v1_chr10_-_114821398_114821490	0.0383184	CDX1,2,4.p2	BC027502|Thap2|66816|THAP domain containing, apoptosis associated protein 2	AK051198|Thap2|66816|THAP domain containing, apoptosis associated protein 2	AK009162|Thap2|66816|THAP domain containing, apoptosis associated protein 2	AK018577|Thap2|66816|THAP domain containing, apoptosis associated protein 2	AK081303|Thap2|66816|THAP domain containing, apoptosis associated protein 2	NM_025780|Thap2|66816|THAP domain containing, apoptosis associated protein 2
mm9_v1_chr3_-_105763165_105763165	0.0367839	CDX1,2,4.p2	BC087882|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	NM_009725|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
mm9_v1_chr4_-_107791061_107791155	0.0366727	CDX1,2,4.p2	M91458|Scp2|20280|sterol carrier protein 2, liver	BC034613|Scp2|20280|sterol carrier protein 2, liver	AK004860|Scp2|20280|sterol carrier protein 2, liver	BC018384|Scp2|20280|sterol carrier protein 2, liver	NM_011327|Scp2|20280|sterol carrier protein 2, liver
mm9_v1_chr14_-_73785067_73785067	0.0366118	CDX1,2,4.p2	AK005125|Itm2b|16432|integral membrane protein 2B	AK152731|Itm2b|16432|integral membrane protein 2B	AK159962|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr1_+_43502537_43502605	0.0358512	CDX1,2,4.p2	AK051665|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2	NM_010879|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2	AK014949|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2
mm9_v1_chr5_+_104864168_104864178	0.0354215	CDX1,2,4.p2	AK151069|Spp1|20750|secreted phosphoprotein 1
mm9_v1_chr7_-_20093663_20093722	0.0349927	CDX1,2,4.p2	BC043666|Bloc1s3|232946|biogenesis of lysosome-related organelles complex-1, subunit 3	NM_177692|Bloc1s3|232946|biogenesis of lysosome-related organelles complex-1, subunit 3	AK054006|Bloc1s3|232946|biogenesis of lysosome-related organelles complex-1, subunit 3	AK153811|Bloc1s3|232946|biogenesis of lysosome-related organelles complex-1, subunit 3
mm9_v1_chr17_-_37712365_37712392	0.0349355	CDX1,2,4.p2	NM_146289|Olfr113|258286|olfactory receptor 113	BC132178|Olfr113|258286|olfactory receptor 113	BC132180|Olfr113|258286|olfactory receptor 113
mm9_v1_chr9_+_120448960_120448967	0.0348901	CDX1,2,4.p2	AK046218|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	AK087561|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	AY714060|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	BC079871|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	AY376710|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3
mm9_v1_chrX_-_75491259_75491259	0.0347063	CDX1,2,4.p2	NM_001126321|Gm14743|236874|predicted gene 14743
mm9_v1_chr2_-_84662710_84662808	0.0346408	CDX1,2,4.p2	AK003989|Smtnl1|68678|smoothelin-like 1	BC002317|Smtnl1|68678|smoothelin-like 1	NM_024230|Smtnl1|68678|smoothelin-like 1
mm9_v1_chr3_+_105673775_105673824	0.0344455	CDX1,2,4.p2	BC100416|Adora3|11542|adenosine A3 receptor	NM_001174169|Adora3|11542|adenosine A3 receptor	AK016304|Adora3|11542|adenosine A3 receptor	AK005581|Adora3|11542|adenosine A3 receptor	NM_027025|Adora3|11542|adenosine A3 receptor
mm9_v1_chr4_+_143157369_143157377	0.0343231	CDX1,2,4.p2	NM_001007579|BC080695|329986|cDNA sequence BC080695	BC080695|BC080695|329986|cDNA sequence BC080695
mm9_v1_chr9_+_121807472_121807540	0.0343133	CDX1,2,4.p2	AK157140|Ccbp2|59289|chemokine binding protein 2
mm9_v1_chr5_+_145016060_145016213	0.0342114	CDX1,2,4.p2	AK049027|Bri3|55950|brain protein I3	NM_018772|Bri3|55950|brain protein I3	AK080467|Bri3|55950|brain protein I3	BC005677|Bri3|55950|brain protein I3	BC095955|Bri3|55950|brain protein I3	BC021149|Bri3|55950|brain protein I3	AF106967|Bri3|55950|brain protein I3
mm9_v1_chr5_-_110537170_110537204	0.0341046	CDX1,2,4.p2	AK159462|Gtpbp6|107999|GTP binding protein 6 (putative)
mm9_v1_chr7_+_54110679_54110700	0.0341003	CDX1,2,4.p2	
mm9_v1_chr5_-_95384342_95384375	0.0338348	CDX1,2,4.p2	BC147369|A430089I19Rik|331195|RIKEN cDNA A430089I19 gene	AK040373|A430089I19Rik|331195|RIKEN cDNA A430089I19 gene	NM_177913|A430089I19Rik|331195|RIKEN cDNA A430089I19 gene
mm9_v1_chr11_-_3093382_3093467	0.033396	CDX1,2,4.p2	AK133558|Sfi1|78887|Sfi1 homolog, spindle assembly associated (yeast)	BC046305|Sfi1|78887|Sfi1 homolog, spindle assembly associated (yeast)	AK170090|Sfi1|78887|Sfi1 homolog, spindle assembly associated (yeast)	AK082866|C330046E03|328468|hypothetical protein C330046E03	BC106124|Sfi1|78887|Sfi1 homolog, spindle assembly associated (yeast)	AK046135|Sfi1|78887|Sfi1 homolog, spindle assembly associated (yeast)	NM_030207|Sfi1|78887|Sfi1 homolog, spindle assembly associated (yeast)
mm9_v1_chr8_+_35217685_35217743	0.0332662	CDX1,2,4.p2	AK007787|Tmem66|67887|transmembrane protein 66	AK075744|Tmem66|67887|transmembrane protein 66	AK088728|Tmem66|67887|transmembrane protein 66
mm9_v1_chr17_+_66460884_66460915	0.0331986	CDX1,2,4.p2	NM_026833|ORF19|68767|open reading frame 19
mm9_v1_chr4_-_86876311_86876327	0.0331781	CDX1,2,4.p2	AK038634|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK034424|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK083127|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr16_+_91465283_91465348	0.0329531	CDX1,2,4.p2	AK162627|A930006K02Rik|78433|RIKEN cDNA A930006K02 gene	AK038602|A930006K02Rik|78433|RIKEN cDNA A930006K02 gene
mm9_v1_chr16_+_4886183_4886360	0.0329081	CDX1,2,4.p2	NM_029657|Mgrn1|17237|mahogunin, ring finger 1	BC046830|Mgrn1|17237|mahogunin, ring finger 1	AK150176|Mgrn1|17237|mahogunin, ring finger 1	AK153407|Mgrn1|17237|mahogunin, ring finger 1	AK011747|Mgrn1|17237|mahogunin, ring finger 1	AK088533|Mgrn1|17237|mahogunin, ring finger 1	AK182412|Mgrn1|17237|mahogunin, ring finger 1
mm9_v1_chr5_-_94735787_94735820	0.0328332	CDX1,2,4.p2	BC147369|A430089I19Rik|331195|RIKEN cDNA A430089I19 gene	AK040373|A430089I19Rik|331195|RIKEN cDNA A430089I19 gene	NM_177913|A430089I19Rik|331195|RIKEN cDNA A430089I19 gene
mm9_v1_chr8_+_28134259_28134401	0.0327391	CDX1,2,4.p2	BC036333|Erlin2|244373|ER lipid raft associated 2	AK030557|Erlin2|244373|ER lipid raft associated 2	BC038374|Erlin2|244373|ER lipid raft associated 2	NM_153592|Erlin2|244373|ER lipid raft associated 2
mm9_v1_chr11_-_62190182_62190262	0.0326618	CDX1,2,4.p2	AB093281|Ncor1|20185|nuclear receptor co-repressor 1
mm9_v1_chrX_-_154036557_154036600	0.0322238	CDX1,2,4.p2	BC038343|Mbtps2|270669|membrane-bound transcription factor peptidase, site 2	AK036071|Mbtps2|270669|membrane-bound transcription factor peptidase, site 2	AK164486|Mbtps2|270669|membrane-bound transcription factor peptidase, site 2	AK047841|Mbtps2|270669|membrane-bound transcription factor peptidase, site 2
mm9_v1_chr7_-_140315100_140315165	0.0320896	CDX1,2,4.p2	NM_009980|Ctbp2|13017|C-terminal binding protein 2
mm9_v1_chr9_+_53213390_53213402	0.0320168	CDX1,2,4.p2	AK016083|4930550C14Rik|75311|RIKEN cDNA 4930550C14 gene	NM_029247|4930550C14Rik|75311|RIKEN cDNA 4930550C14 gene	BC115638|4930550C14Rik|75311|RIKEN cDNA 4930550C14 gene	BC115639|4930550C14Rik|75311|RIKEN cDNA 4930550C14 gene
mm9_v1_chr8_-_74009856_74009896	0.0319	CDX1,2,4.p2	BC027735|Ano8|382014|anoctamin 8
mm9_v1_chr17_+_17539635_17539669	0.0314312	CDX1,2,4.p2	BC049574|Lix1|66643|limb expression 1 homolog (chicken)	NM_025681|Lix1|66643|limb expression 1 homolog (chicken)
mm9_v1_chr7_-_110809831_110809831	0.0312716	CDX1,2,4.p2	BC119275|Olfr623|259126|olfactory receptor 623	NM_147122|Olfr623|259126|olfactory receptor 623
mm9_v1_chr17_+_25270317_25270453	0.0312024	CDX1,2,4.p2	AK030444|Clcn7|26373|chloride channel 7	NM_011930|Clcn7|26373|chloride channel 7	BC054799|Clcn7|26373|chloride channel 7	BC050907|Clcn7|26373|chloride channel 7	BC053049|Clcn7|26373|chloride channel 7	AK128981|Clcn7|26373|chloride channel 7
mm9_v1_chr2_-_34726422_34726488	0.0307697	CDX1,2,4.p2	AK220321|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	AK029067|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	AK005335|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	AK011026|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	AK032992|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	AK078419|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	AK145587|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	AK139644|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	AK148284|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	NM_080554|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
mm9_v1_chr11_-_43239482_43239482	0.0307566	CDX1,2,4.p2	AF069051|Pttg1|30939|pituitary tumor-transforming gene 1	AF071209|Pttg1|30939|pituitary tumor-transforming gene 1	NM_013917|Pttg1|30939|pituitary tumor-transforming gene 1
mm9_v1_chr3_-_153575944_153576012	0.0306993	CDX1,2,4.p2	AK159902|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit
mm9_v1_chr3_-_35899453_35899599	0.0303178	CDX1,2,4.p2	AK178493|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	AK168589|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	AF310338|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	AK032203|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	AK007782|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	BC021382|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	AK031072|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	NM_023644|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)
mm9_v1_chr6_+_83661230_83661288	0.0297138	CDX1,2,4.p2	NM_011912|Vax2|24113|ventral anterior homeobox containing gene 2	Y17792|Vax2|24113|ventral anterior homeobox containing gene 2	BC090635|Vax2|24113|ventral anterior homeobox containing gene 2	BC116389|Vax2|24113|ventral anterior homeobox containing gene 2	BC116390|Vax2|24113|ventral anterior homeobox containing gene 2	AF028715|Vax2|24113|ventral anterior homeobox containing gene 2	AB221556|Vax2|24113|ventral anterior homeobox containing gene 2
mm9_v1_chr6_+_128349783_128350065	0.0296245	CDX1,2,4.p2	AJ278170|Nrip2|60345|nuclear receptor interacting protein 2	NM_001162858|Nrip2|60345|nuclear receptor interacting protein 2	NM_021717|Nrip2|60345|nuclear receptor interacting protein 2	AK156526|Nrip2|60345|nuclear receptor interacting protein 2	AK134689|Nrip2|60345|nuclear receptor interacting protein 2	BC115523|Nrip2|60345|nuclear receptor interacting protein 2	BC094230|Nrip2|60345|nuclear receptor interacting protein 2
mm9_v1_chr8_+_23069185_23069185	0.0291309	CDX1,2,4.p2	AK135805|C86695|97476|expressed sequence C86695	NM_001081662|C86695|97476|expressed sequence C86695
mm9_v1_chr17_-_34941343_34941505	0.0285658	CDX1,2,4.p2	BC127167|Cyp21a1|13079|cytochrome P450, family 21, subfamily a, polypeptide 1	NM_009995|Cyp21a1|13079|cytochrome P450, family 21, subfamily a, polypeptide 1	AK146565|Cyp21a1|13079|cytochrome P450, family 21, subfamily a, polypeptide 1
mm9_v1_chr1_+_157405657_157405756	0.0285255	CDX1,2,4.p2	BC115580|Acbd6|72482|acyl-Coenzyme A binding domain containing 6	BC115581|Acbd6|72482|acyl-Coenzyme A binding domain containing 6
mm9_v1_chr8_-_85982247_85982289	0.0277294	CDX1,2,4.p2	AK002521|Scoc|56367|short coiled-coil protein	BC147069|Scoc|56367|short coiled-coil protein	NM_001039137|Scoc|56367|short coiled-coil protein
mm9_v1_chr2_+_32127324_32127335	0.0275216	CDX1,2,4.p2	NM_001195765|Gm13611|622534|predicted gene 13611
mm9_v1_chr1_-_132783915_132783987	0.0267748	CDX1,2,4.p2	AF333251|Il24|93672|interleukin 24	DQ401033|Il24|93672|interleukin 24	NM_053095|Il24|93672|interleukin 24
mm9_v1_chr1_-_14299936_14300280	0.0263829	CDX1,2,4.p2	BC066860|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK045320|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK042412|Eya1|14048|eyes absent 1 homolog (Drosophila)	BC060260|Eya1|14048|eyes absent 1 homolog (Drosophila)	NM_010164|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK153788|Eya1|14048|eyes absent 1 homolog (Drosophila)
mm9_v1_chr7_+_16760712_16760833	0.0259439	CDX1,2,4.p2	NM_008627|Meis3|17537|Meis homeobox 3	AK083907|Meis3|17537|Meis homeobox 3	AK155364|Meis3|17537|Meis homeobox 3	AK142345|Meis3|17537|Meis homeobox 3	AK134758|Meis3|17537|Meis homeobox 3	BC003762|Meis3|17537|Meis homeobox 3	U57344|Meis3|17537|Meis homeobox 3	BC117532|Meis3|17537|Meis homeobox 3	BC118513|Meis3|17537|Meis homeobox 3
mm9_v1_chr7_-_49314350_49314350	0.0257833	CDX1,2,4.p2	NM_001105056|Vmn2r59|628444|vomeronasal 2, receptor 59
mm9_v1_chr12_-_82669460_82669460	0.0257194	CDX1,2,4.p2	AK014827|Adam21|56622|a disintegrin and metallopeptidase domain 21	NM_020330|Adam21|56622|a disintegrin and metallopeptidase domain 21
mm9_v1_chr19_+_34035676_34035740	0.0257177	CDX1,2,4.p2	AK009923|Lipf|67717|lipase, gastric	AK009428|Lipf|67717|lipase, gastric	AK009431|Lipf|67717|lipase, gastric	AK009546|Lipf|67717|lipase, gastric	AK075913|Lipf|67717|lipase, gastric	AK009300|Lipf|67717|lipase, gastric	AK009359|Lipf|67717|lipase, gastric	AK009413|Lipf|67717|lipase, gastric	AK009437|Lipf|67717|lipase, gastric	AK009459|Lipf|67717|lipase, gastric	AK009473|Lipf|67717|lipase, gastric	AK009474|Lipf|67717|lipase, gastric	AK009523|Lipf|67717|lipase, gastric	AK009525|Lipf|67717|lipase, gastric	AK009537|Lipf|67717|lipase, gastric	AK009560|Lipf|67717|lipase, gastric	AK009571|Lipf|67717|lipase, gastric	AK009573|Lipf|67717|lipase, gastric	AK009729|Lipf|67717|lipase, gastric	AK009773|Lipf|67717|lipase, gastric	AK009875|Lipf|67717|lipase, gastric	AK009990|Lipf|67717|lipase, gastric	AK010019|Lipf|67717|lipase, gastric	AK010026|Lipf|67717|lipase, gastric	AK010035|Lipf|67717|lipase, gastric	AK010036|Lipf|67717|lipase, gastric	AK010058|Lipf|67717|lipase, gastric	AK010061|Lipf|67717|lipase, gastric	AK010091|Lipf|67717|lipase, gastric	AK010093|Lipf|67717|lipase, gastric	AK010103|Lipf|67717|lipase, gastric	AK010106|Lipf|67717|lipase, gastric	AK010110|Lipf|67717|lipase, gastric	AK010116|Lipf|67717|lipase, gastric	AK010123|Lipf|67717|lipase, gastric	AK010125|Lipf|67717|lipase, gastric	AK010139|Lipf|67717|lipase, gastric	AK010148|Lipf|67717|lipase, gastric	AK010173|Lipf|67717|lipase, gastric	AK010203|Lipf|67717|lipase, gastric	AK010231|Lipf|67717|lipase, gastric	AK010236|Lipf|67717|lipase, gastric	BC061067|Lipf|67717|lipase, gastric	NM_026334|Lipf|67717|lipase, gastric	AK009479|Lipf|67717|lipase, gastric	AK009544|Lipf|67717|lipase, gastric
mm9_v1_chr3_+_92211912_92211941	0.0252552	CDX1,2,4.p2	AY158993|Sprr2i|20763|small proline-rich protein 2I	NM_011475|Sprr2i|20763|small proline-rich protein 2I	BC120622|Sprr2i|20763|small proline-rich protein 2I
mm9_v1_chr8_+_87223501_87223638	0.025161	CDX1,2,4.p2	
mm9_v1_chr18_-_77870871_77870990	0.0250421	CDX1,2,4.p2	AK009215|2310007O11Rik|74177|RIKEN cDNA 2310007O11 gene
mm9_v1_chr5_+_124933122_124933232	0.0248594	CDX1,2,4.p2	AK039064|Snrnp35|76167|small nuclear ribonucleoprotein 35 (U11/U12)	BC043031|Snrnp35|76167|small nuclear ribonucleoprotein 35 (U11/U12)	BC058361|Snrnp35|76167|small nuclear ribonucleoprotein 35 (U11/U12)	NM_029532|Snrnp35|76167|small nuclear ribonucleoprotein 35 (U11/U12)	AK018232|Snrnp35|76167|small nuclear ribonucleoprotein 35 (U11/U12)
mm9_v1_chr5_+_33760994_33761117	0.0246264	CDX1,2,4.p2	AK084585|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	AK163728|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene
mm9_v1_chr1_-_158330120_158330120	0.0245513	CDX1,2,4.p2	AK134071|9430070O13Rik|77352|RIKEN cDNA 9430070O13 gene	NM_001198597|9430070O13Rik|77352|RIKEN cDNA 9430070O13 gene
mm9_v1_chr11_+_80022584_80022586	0.0239768	CDX1,2,4.p2	AK032096|Rhot1|59040|ras homolog gene family, member T1	AK054472|Rhot1|59040|ras homolog gene family, member T1
mm9_v1_chr11_-_74424353_74424416	0.0239042	CDX1,2,4.p2	AK147290|Rap1gap2|380711|RAP1 GTPase activating protein 2
mm9_v1_chr16_+_33684551_33684609	0.0238106	CDX1,2,4.p2	AK028518|Heg1|77446|HEG homolog 1 (zebrafish)	AK163128|Heg1|77446|HEG homolog 1 (zebrafish)	NM_175256|Heg1|77446|HEG homolog 1 (zebrafish)
mm9_v1_chr10_+_88194103_88194147	0.0235786	CDX1,2,4.p2	AK088330|Arl1|104303|ADP-ribosylation factor-like 1	AK009226|Arl1|104303|ADP-ribosylation factor-like 1	BC116894|Arl1|104303|ADP-ribosylation factor-like 1	BC116896|Arl1|104303|ADP-ribosylation factor-like 1
mm9_v1_chrX_-_154036606_154036649	0.023482	CDX1,2,4.p2	AK148325|Mbtps2|270669|membrane-bound transcription factor peptidase, site 2	NM_172307|Mbtps2|270669|membrane-bound transcription factor peptidase, site 2
mm9_v1_chr11_+_60282840_60282840	0.0230404	CDX1,2,4.p2	AF144095|Myo15|17910|myosin XV	AY331132|Myo15|17910|myosin XV	AY331133|Myo15|17910|myosin XV	NM_001103171|Myo15|17910|myosin XV	NM_010862|Myo15|17910|myosin XV	NM_182698|Myo15|17910|myosin XV
mm9_v1_chr9_+_121807578_121807589	0.0228151	CDX1,2,4.p2	AK028281|Ccbp2|59289|chemokine binding protein 2	AK147166|Ccbp2|59289|chemokine binding protein 2	NM_021609|Ccbp2|59289|chemokine binding protein 2	AK145960|Ccbp2|59289|chemokine binding protein 2
mm9_v1_chr15_+_37162790_37162813	0.0228039	CDX1,2,4.p2	AK002633|Grhl2|252973|grainyhead-like 2 (Drosophila)	NM_026496|Grhl2|252973|grainyhead-like 2 (Drosophila)
mm9_v1_chr7_-_13404178_13404219	0.0226848	CDX1,2,4.p2	BC139021|Zfp329|67230|zinc finger protein 329	BC139023|Zfp329|67230|zinc finger protein 329	BC072665|Zfp329|67230|zinc finger protein 329	AK013271|Zfp329|67230|zinc finger protein 329	AK014562|Zfp329|67230|zinc finger protein 329	AK051535|Zfp329|67230|zinc finger protein 329	NM_026046|Zfp329|67230|zinc finger protein 329
mm9_v1_chr7_-_30638635_30638689	0.0224381	CDX1,2,4.p2	AK132317|Zfp940|233057|zinc finger protein 940	AK139326|Zfp940|233057|zinc finger protein 940	BC027344|Zfp940|233057|zinc finger protein 940	NM_173738|Zfp940|233057|zinc finger protein 940	AK137204|Zfp940|233057|zinc finger protein 940	AK141787|Zfp940|233057|zinc finger protein 940
mm9_v1_chr17_+_71554015_71554025	0.0222918	CDX1,2,4.p2	BC039698|Lpin2|64898|lipin 2
mm9_v1_chr11_+_80196766_80196898	0.022071	CDX1,2,4.p2	AK087885|Zfp207|22680|zinc finger protein 207	NM_001130169|Zfp207|22680|zinc finger protein 207	NM_001130170|Zfp207|22680|zinc finger protein 207	NM_001130171|Zfp207|22680|zinc finger protein 207	NM_011751|Zfp207|22680|zinc finger protein 207	AK140139|Zfp207|22680|zinc finger protein 207	AK146787|Zfp207|22680|zinc finger protein 207	AK159683|Zfp207|22680|zinc finger protein 207	AK033497|Zfp207|22680|zinc finger protein 207	BC003715|Zfp207|22680|zinc finger protein 207	AB013357|Zfp207|22680|zinc finger protein 207	AB032196|Zfp207|22680|zinc finger protein 207
mm9_v1_chr18_-_61874531_61874583	0.0220204	CDX1,2,4.p2	BC024866|Grpel2|17714|GrpE-like 2, mitochondrial
mm9_v1_chr3_+_51299153_51299205	0.0219824	CDX1,2,4.p2	
mm9_v1_chr11_-_75992950_75993004	0.0214996	CDX1,2,4.p2	AK049259|Vps53|68299|vacuolar protein sorting 53 (yeast)
mm9_v1_chr4_-_19447698_19447753	0.0214901	CDX1,2,4.p2	BC053980|Cpne3|70568|copine III
mm9_v1_chr11_+_17157549_17157664	0.0214728	CDX1,2,4.p2	X95591|C1d|57316|C1D nuclear receptor co-repressor	AK028702|C1d|57316|C1D nuclear receptor co-repressor	AK035169|C1d|57316|C1D nuclear receptor co-repressor	NM_020558|C1d|57316|C1D nuclear receptor co-repressor	BC005436|C1d|57316|C1D nuclear receptor co-repressor
mm9_v1_chr2_-_164082375_164082378	0.0212429	CDX1,2,4.p2	AK035235|Svs3b|329557|seminal vesicle secretory protein 3B	NM_173377|Svs3b|329557|seminal vesicle secretory protein 3B
mm9_v1_chr4_-_123361602_123361602	0.0211944	CDX1,2,4.p2	AF150755|Macf1|11426|microtubule-actin crosslinking factor 1	DQ067088|Macf1|11426|microtubule-actin crosslinking factor 1	NM_009600|Macf1|11426|microtubule-actin crosslinking factor 1
mm9_v1_chr18_-_49915209_49915277	0.0206493	CDX1,2,4.p2	BC139347|Dtwd2|68857|DTW domain containing 2	BC139348|Dtwd2|68857|DTW domain containing 2	BC145608|Dtwd2|68857|DTW domain containing 2	BC145609|Dtwd2|68857|DTW domain containing 2	AK004450|Dtwd2|68857|DTW domain containing 2	AK144689|Dtwd2|68857|DTW domain containing 2	NM_001170960|Dtwd2|68857|DTW domain containing 2	NM_026854|Dtwd2|68857|DTW domain containing 2
mm9_v1_chr7_-_34981664_34981695	0.0203134	CDX1,2,4.p2	BC115797|Pdcd2l|68079|programmed cell death 2-like	AK077948|Pdcd2l|68079|programmed cell death 2-like	NM_026549|Pdcd2l|68079|programmed cell death 2-like	AK151495|Pdcd2l|68079|programmed cell death 2-like	AK003339|Pdcd2l|68079|programmed cell death 2-like	AK154811|Pdcd2l|68079|programmed cell death 2-like
mm9_v1_chr7_-_35015297_35015308	0.0202637	CDX1,2,4.p2	BC086640|Gpi1|14751|glucose phosphate isomerase 1
mm9_v1_chr16_-_16829386_16829548	0.0201322	CDX1,2,4.p2	AF173866|Spag6|50525|sperm associated antigen 6	BC090660|Spag6|50525|sperm associated antigen 6	AK053966|Spag6|50525|sperm associated antigen 6	AK005732|Spag6|50525|sperm associated antigen 6	BC100455|Spag6|50525|sperm associated antigen 6	AK054199|Spag6|50525|sperm associated antigen 6	NM_015773|Spag6|50525|sperm associated antigen 6	AK164680|Spag6|50525|sperm associated antigen 6
mm9_v1_chr8_+_13785611_13785668	0.0199382	CDX1,2,4.p2	AK020823|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	BC116988|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	BC119035|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	NM_025924|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK033239|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK011127|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK166277|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK016053|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK145471|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)
mm9_v1_chr1_+_154597680_154597706	0.0195403	CDX1,2,4.p2	BC100465|Apobec4|71281|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	NM_001081197|Apobec4|71281|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	AK017014|Apobec4|71281|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)
mm9_v1_chr5_+_25021884_25021967	0.019381	CDX1,2,4.p2	AK133375|Cct8l1|242891|chaperonin containing TCP1, subunit 8 (theta)-like 1	NM_198621|Cct8l1|242891|chaperonin containing TCP1, subunit 8 (theta)-like 1	BC050797|Cct8l1|242891|chaperonin containing TCP1, subunit 8 (theta)-like 1
mm9_v1_chr14_+_122433895_122433895	0.0193562	CDX1,2,4.p2	BC099499|Timm8a2|223262|translocase of inner mitochondrial membrane 8 homolog a2 (yeast)	NM_001037744|Timm8a2|223262|translocase of inner mitochondrial membrane 8 homolog a2 (yeast)
mm9_v1_chr16_-_88874510_88874513	0.0192711	CDX1,2,4.p2	BC115787|Krtap16-1|170651|keratin associated protein 16-1	AF345291|Krtap16-1|170651|keratin associated protein 16-1	BC115815|Krtap16-1|170651|keratin associated protein 16-1	NM_130870|Krtap16-1|170651|keratin associated protein 16-1
mm9_v1_chr1_+_180336011_180336163	0.0191	CDX1,2,4.p2	BC025062|Efcab2|68226|EF-hand calcium binding domain 2	NM_026626|Efcab2|68226|EF-hand calcium binding domain 2	AK018894|Efcab2|68226|EF-hand calcium binding domain 2	AK010880|Efcab2|68226|EF-hand calcium binding domain 2
mm9_v1_chr2_+_162843196_162843279	0.0190067	CDX1,2,4.p2	AK160745|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)	AK088467|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)	NM_172150|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)	AK144188|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)	BC037708|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)
mm9_v1_chr17_-_43639675_43639721	0.0188687	CDX1,2,4.p2	AK143906|Mep1a|17287|meprin 1 alpha	AK164734|Mep1a|17287|meprin 1 alpha	AK093914|Mep1a|17287|meprin 1 alpha	M74897|Mep1a|17287|meprin 1 alpha	BC015258|Mep1a|17287|meprin 1 alpha	NM_008585|Mep1a|17287|meprin 1 alpha
mm9_v1_chr11_+_80022573_80022582	0.0188325	CDX1,2,4.p2	BC046785|Rhot1|59040|ras homolog gene family, member T1	AK147749|Rhot1|59040|ras homolog gene family, member T1
mm9_v1_chr9_+_3404047_3404117	0.0188149	CDX1,2,4.p2	BC125483|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC125485|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK083386|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK045423|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	NM_027545|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK014327|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK031423|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC100536|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC051218|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC043480|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)
mm9_v1_chrX_+_63906333_63906333	0.0186476	CDX1,2,4.p2	BC111888|Slitrk2|245450|SLIT and NTRK-like family, member 2	BC112406|Slitrk2|245450|SLIT and NTRK-like family, member 2	NM_198863|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr2_+_71291369_71291427	0.0185669	CDX1,2,4.p2	AK010067|Metap1d|66559|methionyl aminopeptidase type 1D (mitochondrial)	NM_025633|Metap1d|66559|methionyl aminopeptidase type 1D (mitochondrial)	AK005241|Metap1d|66559|methionyl aminopeptidase type 1D (mitochondrial)	BC060739|Metap1d|66559|methionyl aminopeptidase type 1D (mitochondrial)
mm9_v1_chr12_-_77278242_77278245	0.0179532	CDX1,2,4.p2	AK054290|Esr2|13983|estrogen receptor 2 (beta)	AK054301|Esr2|13983|estrogen receptor 2 (beta)	AK054413|Esr2|13983|estrogen receptor 2 (beta)	NM_010157|Esr2|13983|estrogen receptor 2 (beta)	NM_207707|Esr2|13983|estrogen receptor 2 (beta)
mm9_v1_chr4_-_87679175_87679310	0.0179347	CDX1,2,4.p2	BC021420|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AF372456|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_027326|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr14_-_73924950_73925048	0.0178852	CDX1,2,4.p2	AK043196|Nudt15|214254|nudix (nucleoside diphosphate linked moiety X)-type motif 15	AK168451|Nudt15|214254|nudix (nucleoside diphosphate linked moiety X)-type motif 15	BC060962|Nudt15|214254|nudix (nucleoside diphosphate linked moiety X)-type motif 15	AK032657|Nudt15|214254|nudix (nucleoside diphosphate linked moiety X)-type motif 15
mm9_v1_chr9_-_50425561_50425568	0.0177929	CDX1,2,4.p2	NM_001134902|AU019823|270156|expressed sequence AU019823	NM_212449|AU019823|270156|expressed sequence AU019823
mm9_v1_chr6_+_123258350_123258350	0.0175503	CDX1,2,4.p2	NM_001104632|Vmn2r19|232358|vomeronasal 2, receptor 19
mm9_v1_chr5_+_32761471_32761527	0.0175364	CDX1,2,4.p2	AK171283|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK089067|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr18_-_6241456_6241485	0.0173082	CDX1,2,4.p2	BC013248|Kif5b|16573|kinesin family member 5B
mm9_v1_chr15_+_103103335_103103351	0.0172609	CDX1,2,4.p2	BC085314|Copz1|56447|coatomer protein complex, subunit zeta 1	AK003302|Copz1|56447|coatomer protein complex, subunit zeta 1	AK167636|Copz1|56447|coatomer protein complex, subunit zeta 1	BC002246|Copz1|56447|coatomer protein complex, subunit zeta 1	BC025041|Copz1|56447|coatomer protein complex, subunit zeta 1	BC039920|Copz1|56447|coatomer protein complex, subunit zeta 1	BC062203|Copz1|56447|coatomer protein complex, subunit zeta 1	AB037370|Copz1|56447|coatomer protein complex, subunit zeta 1	NM_019817|Copz1|56447|coatomer protein complex, subunit zeta 1	BC052891|Copz1|56447|coatomer protein complex, subunit zeta 1	BC058524|Copz1|56447|coatomer protein complex, subunit zeta 1
mm9_v1_chrX_+_166123130_166123181	0.0171957	CDX1,2,4.p2	AK160120|Mid1|17318|midline 1	NM_010797|Mid1|17318|midline 1	Y14848|Mid1|17318|midline 1
mm9_v1_chr1_+_138311847_138311988	0.0168511	CDX1,2,4.p2	AK004833|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	NM_026500|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	AK013179|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	AK133731|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	AK076462|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	BC023840|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
mm9_v1_chr3_+_81800843_81800866	0.0168181	CDX1,2,4.p2	NM_021370|Accn5|58170|amiloride-sensitive cation channel 5, intestinal	Y19035|Accn5|58170|amiloride-sensitive cation channel 5, intestinal
mm9_v1_chr3_+_96433850_96433878	0.0166865	CDX1,2,4.p2	NM_001102407|Rbm8a|60365|RNA binding motif protein 8a	NM_025875|Rbm8a|60365|RNA binding motif protein 8a	AK009953|Rbm8a|60365|RNA binding motif protein 8a	AK010284|Rbm8a|60365|RNA binding motif protein 8a	AK011215|Rbm8a|60365|RNA binding motif protein 8a	AK082925|Rbm8a|60365|RNA binding motif protein 8a	BC020086|Rbm8a|60365|RNA binding motif protein 8a	BC058376|Rbm8a|60365|RNA binding motif protein 8a
mm9_v1_chr18_+_37678006_37678134	0.0166585	CDX1,2,4.p2	AK043492|Pcdhb22|93893|protocadherin beta 22	NM_053147|Pcdhb22|93893|protocadherin beta 22	BC094239|Pcdhb22|93893|protocadherin beta 22	AF326315|Pcdhb22|93893|protocadherin beta 22	AY013784|Pcdhb22|93893|protocadherin beta 22
mm9_v1_chr13_-_27605067_27605083	0.0166237	CDX1,2,4.p2	AF230921|Prl8a8|74188|prolactin family 8, subfamily a, member 81	AF230922|Prl8a8|74188|prolactin family 8, subfamily a, member 81	AF230923|Prl8a8|74188|prolactin family 8, subfamily a, member 81	BC100326|Prl8a8|74188|prolactin family 8, subfamily a, member 81	AF466150|Prl8a8|74188|prolactin family 8, subfamily a, member 81	NM_023741|Prl8a8|74188|prolactin family 8, subfamily a, member 81	AK167369|Prl8a8|74188|prolactin family 8, subfamily a, member 81	AK005568|Prl8a8|74188|prolactin family 8, subfamily a, member 81
mm9_v1_chr7_+_128061297_128061331	0.0164837	CDX1,2,4.p2	AK012184|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	AK144721|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	AK146279|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	AK159723|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	BC037637|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	BC028924|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chrX_-_151013872_151013872	0.0163373	CDX1,2,4.p2	BC100469|Gm5647|434881|predicted gene 5647	NM_001037167|Gm5647|434881|predicted gene 5647
mm9_v1_chr8_+_87561055_87561132	0.0158751	CDX1,2,4.p2	NM_001122843|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	BC003275|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)
mm9_v1_chr2_-_14976498_14976510	0.0157117	CDX1,2,4.p2	AK016629|Nsun6|74455|NOL1/NOP2/Sun domain family member 6	NM_001165941|Nsun6|74455|NOL1/NOP2/Sun domain family member 6	NM_001165943|Nsun6|74455|NOL1/NOP2/Sun domain family member 6	AK016811|Nsun6|74455|NOL1/NOP2/Sun domain family member 6
mm9_v1_chr4_-_88280078_88280089	0.0156486	CDX1,2,4.p2	BC053719|C87499|381590|expressed sequence C87499	AK135883|C87499|381590|expressed sequence C87499	AK163216|C87499|381590|expressed sequence C87499	NM_198663|C87499|381590|expressed sequence C87499
mm9_v1_chr3_+_28704357_28704400	0.0156104	CDX1,2,4.p2	BC120716|Rpl22l1|68028|ribosomal protein L22 like 1	BC120718|Rpl22l1|68028|ribosomal protein L22 like 1
mm9_v1_chr17_-_40345499_40345553	0.0153924	CDX1,2,4.p2	M18654|Pgk2|18663|phosphoglycerate kinase 2	BC052343|Pgk2|18663|phosphoglycerate kinase 2	AK015016|Pgk2|18663|phosphoglycerate kinase 2	AK133436|Pgk2|18663|phosphoglycerate kinase 2	BC061054|Pgk2|18663|phosphoglycerate kinase 2	NM_031190|Pgk2|18663|phosphoglycerate kinase 2
mm9_v1_chr3_-_93982114_93982114	0.0153537	CDX1,2,4.p2	AK139538|Gm10696|100043188|predicted gene 10696	NM_001146107|Gm10696|100043188|predicted gene 10696
mm9_v1_chr2_+_151319915_151320083	0.0152701	CDX1,2,4.p2	AK039136|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	AK137088|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	AK013024|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	BC050936|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	NM_198326|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	BC106101|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	AK181317|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)
mm9_v1_chr11_-_79775842_79775900	0.0151645	CDX1,2,4.p2	BC018250|Utp6|216987|UTP6, small subunit (SSU) processome component, homolog (yeast)	BC023920|Utp6|216987|UTP6, small subunit (SSU) processome component, homolog (yeast)	AK084976|Utp6|216987|UTP6, small subunit (SSU) processome component, homolog (yeast)	BC024850|Utp6|216987|UTP6, small subunit (SSU) processome component, homolog (yeast)	AK029151|Utp6|216987|UTP6, small subunit (SSU) processome component, homolog (yeast)	NM_144826|Utp6|216987|UTP6, small subunit (SSU) processome component, homolog (yeast)	AK164010|Utp6|216987|UTP6, small subunit (SSU) processome component, homolog (yeast)	AK169785|Utp6|216987|UTP6, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr18_-_39572137_39572180	0.0150409	CDX1,2,4.p2	AK171439|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	AK163857|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr5_-_87061409_87061448	0.0145468	CDX1,2,4.p2	AK029032|Tmprss11f|243083|transmembrane protease, serine 11f	AK028587|Tmprss11f|243083|transmembrane protease, serine 11f	AK028447|Tmprss11f|243083|transmembrane protease, serine 11f	AK036957|Tmprss11f|243083|transmembrane protease, serine 11f	NM_178730|Tmprss11f|243083|transmembrane protease, serine 11f
mm9_v1_chr9_-_83334633_83334733	0.014227	CDX1,2,4.p2	BC049101|Lca5|75782|Leber congenital amaurosis 5 (human)	BC052060|Lca5|75782|Leber congenital amaurosis 5 (human)	AK047956|Lca5|75782|Leber congenital amaurosis 5 (human)	AK015260|Lca5|75782|Leber congenital amaurosis 5 (human)	AK039510|Lca5|75782|Leber congenital amaurosis 5 (human)	NM_027448|Lca5|75782|Leber congenital amaurosis 5 (human)	NM_029434|Lca5|75782|Leber congenital amaurosis 5 (human)
mm9_v1_chrX_+_160577312_160577325	0.0139699	CDX1,2,4.p2	EF408739|Ace2|70008|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	EF408740|Ace2|70008|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
mm9_v1_chr1_+_19202046_19202134	0.0139355	CDX1,2,4.p2	AK032045|Tcfap2b|21419|transcription factor AP-2 beta	NM_001025305|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr18_-_6241487_6241496	0.0138963	CDX1,2,4.p2	BC013817|Kif5b|16573|kinesin family member 5B	BC025864|Kif5b|16573|kinesin family member 5B
mm9_v1_chr11_+_75300278_75300323	0.0138862	CDX1,2,4.p2	NM_138659|Prpf8|192159|pre-mRNA processing factor 8	AK041017|Prpf8|192159|pre-mRNA processing factor 8
mm9_v1_chrX_-_137347947_137347971	0.0138281	CDX1,2,4.p2	BC116863|Tex13|83555|testis expressed gene 13	BC119125|Tex13|83555|testis expressed gene 13	AF285576|Tex13|83555|testis expressed gene 13	NM_031381|Tex13|83555|testis expressed gene 13
mm9_v1_chr16_-_17911283_17911450	0.0136779	CDX1,2,4.p2	AK088520|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK142684|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK148404|Dgcr14|27886|DiGeorge syndrome critical region gene 14	BC013711|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AF037256|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_001081633|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_022408|Dgcr14|27886|DiGeorge syndrome critical region gene 14
mm9_v1_chr11_+_53164267_53164268	0.0136558	CDX1,2,4.p2	NM_033565|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr10_-_114799212_114799324	0.0135907	CDX1,2,4.p2	AK136778|Tmem19|67226|transmembrane protein 19	AK170143|Tmem19|67226|transmembrane protein 19	AK171087|Tmem19|67226|transmembrane protein 19	AK018383|Tmem19|67226|transmembrane protein 19	AK155275|Tmem19|67226|transmembrane protein 19	AK042426|Tmem19|67226|transmembrane protein 19	AK079735|Tmem19|67226|transmembrane protein 19	BC016895|Tmem19|67226|transmembrane protein 19	AK036228|Tmem19|67226|transmembrane protein 19	AK138931|Tmem19|67226|transmembrane protein 19	NM_133683|Tmem19|67226|transmembrane protein 19	AK034298|Tmem19|67226|transmembrane protein 19
mm9_v1_chr7_-_24993103_24993167	0.0131498	CDX1,2,4.p2	BC005456|Zfp111|56707|zinc finger protein 111	AK135436|Zfp111|56707|zinc finger protein 111	NM_019940|Zfp111|56707|zinc finger protein 111
mm9_v1_chr16_+_32496350_32496366	0.0131072	CDX1,2,4.p2	AK132780|Zdhhc19|245308|zinc finger, DHHC domain containing 19	AK133398|Zdhhc19|245308|zinc finger, DHHC domain containing 19	BC049761|Zdhhc19|245308|zinc finger, DHHC domain containing 19	NM_199309|Zdhhc19|245308|zinc finger, DHHC domain containing 19
mm9_v1_chr17_+_73267643_73267665	0.0128088	CDX1,2,4.p2	AK020110|Lbh|77889|limb-bud and heart	NM_029999|Lbh|77889|limb-bud and heart	AF317517|Lbh|77889|limb-bud and heart	BC026827|Lbh|77889|limb-bud and heart	BC052470|Lbh|77889|limb-bud and heart
mm9_v1_chr11_+_116393224_116393224	0.0126252	CDX1,2,4.p2	AF068748|Sphk1|20698|sphingosine kinase 1	NM_001172475|Sphk1|20698|sphingosine kinase 1
mm9_v1_chr10_-_93498449_93498481	0.0123421	CDX1,2,4.p2	AY753561|Vezt|215008|vezatin, adherens junctions transmembrane protein	AY753562|Vezt|215008|vezatin, adherens junctions transmembrane protein	DQ025533|Vezt|215008|vezatin, adherens junctions transmembrane protein	BC056428|Vezt|215008|vezatin, adherens junctions transmembrane protein
mm9_v1_chr4_-_107973683_107973743	0.0123213	CDX1,2,4.p2	AK166278|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK148335|Zyg11b|414872|zyg-ll homolog B (C. elegans)	NM_001033634|Zyg11b|414872|zyg-ll homolog B (C. elegans)
mm9_v1_chr10_+_28863801_28863929	0.0119311	CDX1,2,4.p2	NM_026138|6330407J23Rik|67412|RIKEN cDNA 6330407J23 gene	AK030682|6330407J23Rik|67412|RIKEN cDNA 6330407J23 gene
mm9_v1_chr6_+_31348811_31348859	0.0117686	CDX1,2,4.p2	AK037967|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs	NM_013791|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs	AK165239|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs	AK077541|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs	AK164822|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs	BC013703|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs	AK171980|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs	U72194|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs	AK155457|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs
mm9_v1_chr6_-_113451811_113451890	0.011399	CDX1,2,4.p2	BC058349|Prrt3|210673|proline-rich transmembrane protein 3	NM_172487|Prrt3|210673|proline-rich transmembrane protein 3	AK136854|Prrt3|210673|proline-rich transmembrane protein 3	AK045491|Prrt3|210673|proline-rich transmembrane protein 3	AK045678|Prrt3|210673|proline-rich transmembrane protein 3
mm9_v1_chr11_-_100334076_100334121	0.0112352	CDX1,2,4.p2	BC111873|Klhl11|217194|kelch-like 11 (Drosophila)	AK029101|Klhl11|217194|kelch-like 11 (Drosophila)	NM_172565|Klhl11|217194|kelch-like 11 (Drosophila)
mm9_v1_chr9_-_80359017_80359087	0.0107774	CDX1,2,4.p2	AF229929|Impg1|63859|interphotoreceptor matrix proteoglycan 1	BC022970|Impg1|63859|interphotoreceptor matrix proteoglycan 1	AK020862|Impg1|63859|interphotoreceptor matrix proteoglycan 1	NM_022016|Impg1|63859|interphotoreceptor matrix proteoglycan 1	AF266478|Impg1|63859|interphotoreceptor matrix proteoglycan 1
mm9_v1_chr6_+_48563178_48563183	0.0106318	CDX1,2,4.p2	AK048054|Zfp775|243372|zinc finger protein 775	NM_173429|Zfp775|243372|zinc finger protein 775
mm9_v1_chr2_+_151668662_151668699	0.0105645	CDX1,2,4.p2	AK020904|Rspo4|228770|R-spondin family, member 4	AK043484|Rspo4|228770|R-spondin family, member 4	NM_001040689|Rspo4|228770|R-spondin family, member 4	BC048707|Rspo4|228770|R-spondin family, member 4	BC116367|Rspo4|228770|R-spondin family, member 4
mm9_v1_chr7_-_109636820_109636820	0.0104069	CDX1,2,4.p2	NM_020289|Olfr544|257926|olfactory receptor 544
mm9_v1_chr2_+_30271577_30271577	0.0102165	CDX1,2,4.p2	AK150029|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)
mm9_v1_chr18_-_15309939_15309954	0.0100506	CDX1,2,4.p2	AY899808|Kctd1|106931|potassium channel tetramerisation domain containing 1	NM_134112|Kctd1|106931|potassium channel tetramerisation domain containing 1
mm9_v1_chr18_+_6603626_6603630	0.0099621	CDX1,2,4.p2	BC049627|4921524L21Rik|70901|RIKEN cDNA 4921524L21 gene	AK014961|4921524L21Rik|70901|RIKEN cDNA 4921524L21 gene	NM_027598|4921524L21Rik|70901|RIKEN cDNA 4921524L21 gene
mm9_v1_chr9_-_54582260_54582334	0.00992908	CDX1,2,4.p2	AK012342|Wdr61|66317|WD repeat domain 61	AK167706|Wdr61|66317|WD repeat domain 61	AK153862|Wdr61|66317|WD repeat domain 61	AK077037|Wdr61|66317|WD repeat domain 61	EF011623|Wdr61|66317|WD repeat domain 61	BC023026|Wdr61|66317|WD repeat domain 61	NM_001025375|Wdr61|66317|WD repeat domain 61	AK010283|Wdr61|66317|WD repeat domain 61	AF309554|Wdr61|66317|WD repeat domain 61	AK142498|Wdr61|66317|WD repeat domain 61	NM_001025376|Wdr61|66317|WD repeat domain 61	AK013114|Wdr61|66317|WD repeat domain 61	AK049527|Wdr61|66317|WD repeat domain 61	NM_023191|Wdr61|66317|WD repeat domain 61
mm9_v1_chr11_-_98407281_98407344	0.00990383	CDX1,2,4.p2	AK157177|Ikzf3|22780|IKAROS family zinc finger 3	AK036657|Ikzf3|22780|IKAROS family zinc finger 3	NM_011771|Ikzf3|22780|IKAROS family zinc finger 3
mm9_v1_chr11_-_81387006_81387040	0.00950017	CDX1,2,4.p2	BC139179|1700071K01Rik|237880|RIKEN cDNA 1700071K01 gene	BC139181|1700071K01Rik|237880|RIKEN cDNA 1700071K01 gene	AK131752|1700071K01Rik|237880|RIKEN cDNA 1700071K01 gene	NM_001033765|1700071K01Rik|237880|RIKEN cDNA 1700071K01 gene
mm9_v1_chr18_+_36942877_36943029	0.00936021	CDX1,2,4.p2	AK088789|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	AK014515|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	AK145003|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	AK077621|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	BC004596|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	NM_080636|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)
mm9_v1_chr9_-_20532657_20532672	0.00925912	CDX1,2,4.p2	BC115981|Olfm2|244723|olfactomedin 2	NM_173777|Olfm2|244723|olfactomedin 2	BC117536|Olfm2|244723|olfactomedin 2	AK037199|Olfm2|244723|olfactomedin 2
mm9_v1_chr1_+_134373950_134374067	0.00916639	CDX1,2,4.p2	AK049247|Rbbp5|213464|retinoblastoma binding protein 5	BC057632|Rbbp5|213464|retinoblastoma binding protein 5	AK179022|Rbbp5|213464|retinoblastoma binding protein 5	AK195903|Rbbp5|213464|retinoblastoma binding protein 5
mm9_v1_chr13_+_93195850_93196061	0.00905155	CDX1,2,4.p2	AK078203|Ankrd34b|218440|ankyrin repeat domain 34B	AK090387|Ankrd34b|218440|ankyrin repeat domain 34B	NM_175455|Ankrd34b|218440|ankyrin repeat domain 34B	BC096609|Ankrd34b|218440|ankyrin repeat domain 34B	BC119312|Ankrd34b|218440|ankyrin repeat domain 34B	BC119314|Ankrd34b|218440|ankyrin repeat domain 34B
mm9_v1_chr17_+_18288893_18288893	0.0089738	CDX1,2,4.p2	NM_001104541|Vmn2r92|627111|vomeronasal 2, receptor 92
mm9_v1_chr15_+_102348622_102348920	0.00888549	CDX1,2,4.p2	AK143188|Tarbp2|21357|TAR (HIV) RNA binding protein 2	NM_009319|Tarbp2|21357|TAR (HIV) RNA binding protein 2	AK144205|Tarbp2|21357|TAR (HIV) RNA binding protein 2	BC053432|Tarbp2|21357|TAR (HIV) RNA binding protein 2	U79962|Tarbp2|21357|TAR (HIV) RNA binding protein 2	BC002028|Tarbp2|21357|TAR (HIV) RNA binding protein 2
mm9_v1_chr1_+_180336178_180336231	0.00884364	CDX1,2,4.p2	AK019802|Efcab2|68226|EF-hand calcium binding domain 2	AK019663|Efcab2|68226|EF-hand calcium binding domain 2	AK015157|Efcab2|68226|EF-hand calcium binding domain 2	AK029880|Efcab2|68226|EF-hand calcium binding domain 2
mm9_v1_chr19_+_46206383_46206393	0.00883558	CDX1,2,4.p2	NM_007703|Elovl3|12686|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	U97107|Elovl3|12686|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	BC016468|Elovl3|12686|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3
mm9_v1_chr2_-_114000981_114001027	0.00869341	CDX1,2,4.p2	AK138700|Aqr|11834|aquarius	AK082873|Aqr|11834|aquarius
mm9_v1_chr18_-_37803782_37803859	0.0086871	CDX1,2,4.p2	BC029673|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AF144562|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK075700|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK029380|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK076362|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK089054|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_175770|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr18_-_67405109_67405483	0.00841649	CDX1,2,4.p2	BC045146|Mppe1|225651|metallophosphoesterase 1	BC086456|Mppe1|225651|metallophosphoesterase 1	AK172496|Mppe1|225651|metallophosphoesterase 1	AK172000|Mppe1|225651|metallophosphoesterase 1	AK154265|Mppe1|225651|metallophosphoesterase 1	AK041262|Mppe1|225651|metallophosphoesterase 1	NM_172630|Mppe1|225651|metallophosphoesterase 1
mm9_v1_chr12_+_103708119_103708119	0.0084121	CDX1,2,4.p2	BC086782|Golga5|27277|golgi autoantigen, golgin subfamily a, 5	NM_013747|Golga5|27277|golgi autoantigen, golgin subfamily a, 5
mm9_v1_chr11_-_17111513_17111579	0.00840346	CDX1,2,4.p2	AK165942|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK007324|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK009146|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK009896|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK017153|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	BC020037|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AF349950|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)
mm9_v1_chr19_-_56622636_56622751	0.00838633	CDX1,2,4.p2	AK029794|Dclre1a|55947|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)	BC076617|Dclre1a|55947|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm9_v1_chr3_-_96729852_96729942	0.00835353	CDX1,2,4.p2	GU363513|Gja8|14616|gap junction protein, alpha 8	NM_008123|Gja8|14616|gap junction protein, alpha 8	BC120513|Gja8|14616|gap junction protein, alpha 8	BC125569|Gja8|14616|gap junction protein, alpha 8	GU363514|Gja8|14616|gap junction protein, alpha 8
mm9_v1_chr1_-_39707919_39708026	0.008049	CDX1,2,4.p2	BC116790|Creg2|263764|cellular repressor of E1A-stimulated genes 2	BC116792|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK044192|Creg2|263764|cellular repressor of E1A-stimulated genes 2	NM_170597|Creg2|263764|cellular repressor of E1A-stimulated genes 2
mm9_v1_chr2_+_154483045_154483087	0.00766921	CDX1,2,4.p2	BC006905|Chmp4b|75608|chromatin modifying protein 4B
mm9_v1_chr17_-_56323312_56323363	0.00756086	CDX1,2,4.p2	AY038184|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK008854|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK018016|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK133947|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK008289|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK162834|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK004074|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK148083|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	NM_080837|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	BC132127|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	BC132129|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed
mm9_v1_chr14_-_55224744_55224800	0.00741697	CDX1,2,4.p2	BC029624|4931414P19Rik|74359|RIKEN cDNA 4931414P19 gene	BC034212|4931414P19Rik|74359|RIKEN cDNA 4931414P19 gene	NM_028890|4931414P19Rik|74359|RIKEN cDNA 4931414P19 gene	AK163117|4931414P19Rik|74359|RIKEN cDNA 4931414P19 gene
mm9_v1_chr7_+_5013744_5013873	0.00719598	CDX1,2,4.p2	BC043071|U2af2|22185|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	NM_133671|U2af2|22185|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	AK078496|U2af2|22185|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	X64587|U2af2|22185|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
mm9_v1_chr17_-_65989095_65989095	0.00709897	CDX1,2,4.p2	AF196282|Txndc2|213272|thioredoxin domain containing 2 (spermatozoa)	NM_153519|Txndc2|213272|thioredoxin domain containing 2 (spermatozoa)
mm9_v1_chr13_+_76236181_76236251	0.00698489	CDX1,2,4.p2	AK164627|Ttc37|218343|tetratricopeptide repeat domain 37	NM_001081352|Ttc37|218343|tetratricopeptide repeat domain 37	AK134255|Ttc37|218343|tetratricopeptide repeat domain 37
mm9_v1_chr3_-_156224638_156224816	0.00696078	CDX1,2,4.p2	AK083124|4930570G19Rik|329782|RIKEN cDNA 4930570G19 gene	AK016265|4930570G19Rik|329782|RIKEN cDNA 4930570G19 gene	BC048612|4930570G19Rik|329782|RIKEN cDNA 4930570G19 gene
mm9_v1_chr1_-_172145380_172145502	0.00689472	CDX1,2,4.p2	Y10725|Uhmk1|16589|U2AF homology motif (UHM) kinase 1
mm9_v1_chr13_+_47289371_47289389	0.0068819	CDX1,2,4.p2	AK052846|Rnf144b|218215|ring finger protein 144B	NM_001170643|Rnf144b|218215|ring finger protein 144B	AK040939|Rnf144b|218215|ring finger protein 144B	BC025007|Rnf144b|218215|ring finger protein 144B
mm9_v1_chr7_-_31016726_31016816	0.00665707	CDX1,2,4.p2	BC010684|Tbcb|66411|tubulin folding cofactor B	AK002316|Tbcb|66411|tubulin folding cofactor B	AK003655|Tbcb|66411|tubulin folding cofactor B	AK010438|Tbcb|66411|tubulin folding cofactor B
mm9_v1_chr14_-_49865069_49865102	0.00641068	CDX1,2,4.p2	AK005866|1700011H14Rik|67082|RIKEN cDNA 1700011H14 gene	BC026534|1700011H14Rik|67082|RIKEN cDNA 1700011H14 gene	AK007176|1700011H14Rik|67082|RIKEN cDNA 1700011H14 gene	NM_025956|1700011H14Rik|67082|RIKEN cDNA 1700011H14 gene
mm9_v1_chr16_+_16213397_16213405	0.00616535	CDX1,2,4.p2	AK005020|Pkp2|67451|plakophilin 2
mm9_v1_chr1_-_137481914_137481937	0.00614206	CDX1,2,4.p2	NM_173437|Nav1|215690|neuron navigator 1
mm9_v1_chr1_+_180249260_180249302	0.00601622	CDX1,2,4.p2	NM_025511|Fam36a|66359|family with sequence similarity 36, member A	BC059717|Fam36a|66359|family with sequence similarity 36, member A	AK009178|Fam36a|66359|family with sequence similarity 36, member A	BC055277|Fam36a|66359|family with sequence similarity 36, member A
mm9_v1_chr11_+_46250448_46250454	0.00592158	CDX1,2,4.p2	NM_001104530|Med7|66213|mediator complex subunit 7	NM_001104557|Med7|66213|mediator complex subunit 7
mm9_v1_chr3_+_55265811_55265928	0.00564582	CDX1,2,4.p2	AF155821|Dclk1|13175|doublecortin-like kinase 1	AK032424|Dclk1|13175|doublecortin-like kinase 1	AK081200|Dclk1|13175|doublecortin-like kinase 1	AB073969|Dclk1|13175|doublecortin-like kinase 1	AK047716|Dclk1|13175|doublecortin-like kinase 1	AY968047|Dclk1|13175|doublecortin-like kinase 1	AY968048|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr11_-_78020699_78020746	0.00561788	CDX1,2,4.p2	
mm9_v1_chr8_+_112302530_112302620	0.00557565	CDX1,2,4.p2	AK036387|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	NM_009677|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	X54424|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	AK145821|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC052703|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC054535|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit
mm9_v1_chr13_+_41096358_41096399	0.00547616	CDX1,2,4.p2	NM_026550|Pak1ip1|68083|PAK1 interacting protein 1	AK077846|Pak1ip1|68083|PAK1 interacting protein 1	AF386076|Pak1ip1|68083|PAK1 interacting protein 1	AK017959|Pak1ip1|68083|PAK1 interacting protein 1
mm9_v1_chr11_-_86331141_86331142	0.00546714	CDX1,2,4.p2	AK012045|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1
mm9_v1_chr1_-_33726582_33726638	0.00543505	CDX1,2,4.p2	D17385|Prim2|19076|DNA primase, p58 subunit	AK153970|Prim2|19076|DNA primase, p58 subunit	BC019500|Prim2|19076|DNA primase, p58 subunit	D13545|Prim2|19076|DNA primase, p58 subunit	NM_008922|Prim2|19076|DNA primase, p58 subunit	AK076095|Prim2|19076|DNA primase, p58 subunit	AK077760|Prim2|19076|DNA primase, p58 subunit	AK168246|Prim2|19076|DNA primase, p58 subunit
mm9_v1_chr6_+_30688050_30688066	0.00503199	CDX1,2,4.p2	AK031718|Mest|17294|mesoderm specific transcript	AK032881|Mest|17294|mesoderm specific transcript	AK034949|Mest|17294|mesoderm specific transcript	AK146457|Mest|17294|mesoderm specific transcript	AK168714|Mest|17294|mesoderm specific transcript	AK168732|Mest|17294|mesoderm specific transcript	AK168743|Mest|17294|mesoderm specific transcript	AK168995|Mest|17294|mesoderm specific transcript	AK169095|Mest|17294|mesoderm specific transcript	AK169266|Mest|17294|mesoderm specific transcript	D16262|Mest|17294|mesoderm specific transcript	NM_008590|Mest|17294|mesoderm specific transcript	BC006639|Mest|17294|mesoderm specific transcript
mm9_v1_chr9_+_119803988_119804030	0.00477827	CDX1,2,4.p2	BC050106|Wdr48|67561|WD repeat domain 48	AK031244|Wdr48|67561|WD repeat domain 48	BC062967|Wdr48|67561|WD repeat domain 48	AK018396|Wdr48|67561|WD repeat domain 48	AK030041|Wdr48|67561|WD repeat domain 48	AK035273|Wdr48|67561|WD repeat domain 48	AK035864|Wdr48|67561|WD repeat domain 48	AK043970|Wdr48|67561|WD repeat domain 48	AK128953|Wdr48|67561|WD repeat domain 48	NM_026236|Wdr48|67561|WD repeat domain 48	AK033631|Wdr48|67561|WD repeat domain 48	AK012599|Wdr48|67561|WD repeat domain 48	BC048155|Wdr48|67561|WD repeat domain 48
mm9_v1_chr5_+_7304126_7304163	0.00437842	CDX1,2,4.p2	BC049718|4921511H03Rik|70920|RIKEN cDNA 4921511H03 gene	AK133311|4921511H03Rik|70920|RIKEN cDNA 4921511H03 gene	AK014870|4921511H03Rik|70920|RIKEN cDNA 4921511H03 gene	AK076678|4921511H03Rik|70920|RIKEN cDNA 4921511H03 gene	NM_027603|4921511H03Rik|70920|RIKEN cDNA 4921511H03 gene
mm9_v1_chr13_+_41111618_41111728	0.00431811	CDX1,2,4.p2	NM_025387|Tmem14c|66154|transmembrane protein 14C	AK010609|Tmem14c|66154|transmembrane protein 14C	AK003891|Tmem14c|66154|transmembrane protein 14C	AK008495|Tmem14c|66154|transmembrane protein 14C	AK019395|Tmem14c|66154|transmembrane protein 14C	AK089021|Tmem14c|66154|transmembrane protein 14C	AK012101|Tmem14c|66154|transmembrane protein 14C	AK050688|Tmem14c|66154|transmembrane protein 14C	BC055862|Tmem14c|66154|transmembrane protein 14C	BC069899|Tmem14c|66154|transmembrane protein 14C	AK008878|Tmem14c|66154|transmembrane protein 14C	BC025854|Tmem14c|66154|transmembrane protein 14C
mm9_v1_chr4_-_73436505_73436616	0.00430616	CDX1,2,4.p2	NM_001017427|Rasef|242505|RAS and EF hand domain containing	AK132691|Rasef|242505|RAS and EF hand domain containing
mm9_v1_chrX_-_136533089_136533133	0.00411359	CDX1,2,4.p2	BC037024|Rbm41|237073|RNA binding motif protein 41	AK077972|Rbm41|237073|RNA binding motif protein 41	NM_001172147|Rbm41|237073|RNA binding motif protein 41	NM_001172148|Rbm41|237073|RNA binding motif protein 41	NM_153586|Rbm41|237073|RNA binding motif protein 41
mm9_v1_chr9_+_54758322_54758381	0.00410939	CDX1,2,4.p2	AK038058|Ireb2|64602|iron responsive element binding protein 2
mm9_v1_chr4_-_126738303_126738384	0.00400191	CDX1,2,4.p2	BC064774|Zmym1|68310|zinc finger, MYM domain containing 1	AK138687|Zmym1|68310|zinc finger, MYM domain containing 1	AK166769|Zmym1|68310|zinc finger, MYM domain containing 1	AK049568|Zmym1|68310|zinc finger, MYM domain containing 1	AK035618|Zmym1|68310|zinc finger, MYM domain containing 1	NM_026670|Zmym1|68310|zinc finger, MYM domain containing 1	AK167508|Zmym1|68310|zinc finger, MYM domain containing 1	AK016783|Zmym1|68310|zinc finger, MYM domain containing 1	AK044538|Zmym1|68310|zinc finger, MYM domain containing 1
mm9_v1_chr5_-_121062483_121062618	0.00394593	CDX1,2,4.p2	BC021365|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene	AK003581|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene	NM_029096|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene	NM_133908|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene
mm9_v1_chr12_-_47919695_47919761	0.00386387	CDX1,2,4.p2	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr2_+_112307393_112307430	0.00385473	CDX1,2,4.p2	AK045622|2900064A13Rik|73024|RIKEN cDNA 2900064A13 gene
mm9_v1_chr14_+_58445584_58445682	0.00376697	CDX1,2,4.p2	AK212819|Mrp63|67840|mitochondrial ribosomal protein 63
mm9_v1_chr2_+_71711274_71711402	0.003469	CDX1,2,4.p2	AK046805|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK153649|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	NM_172665|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK163553|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	BC027196|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK028017|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK085215|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	BC025480|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1
mm9_v1_chr7_-_19942264_19942376	0.00333636	CDX1,2,4.p2	AK075701|Cd3eap|70333|CD3E antigen, epsilon polypeptide associated protein
mm9_v1_chr11_+_120094240_120094260	0.00333499	CDX1,2,4.p2	AK147250|Bahcc1|268515|BAH domain and coiled-coil containing 1	NM_198423|Bahcc1|268515|BAH domain and coiled-coil containing 1
mm9_v1_chr9_+_57981881_57981881	0.00297788	CDX1,2,4.p2	NM_001162476|Stra6|20897|stimulated by retinoic acid gene 6
mm9_v1_chr2_+_36086059_36086082	0.00293838	CDX1,2,4.p2	AK134163|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AY547265|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	CT010314|Ptgs1|19224|prostaglandin-endoperoxide synthase 1
mm9_v1_chr19_-_19185685_19185685	0.00289004	CDX1,2,4.p2	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr5_-_144655875_144655935	0.00286289	CDX1,2,4.p2	AK017053|Ankrd61|66729|ankyrin repeat domain 61	BC052346|Ankrd61|66729|ankyrin repeat domain 61	AK014929|Ankrd61|66729|ankyrin repeat domain 61	NM_025732|Ankrd61|66729|ankyrin repeat domain 61
mm9_v1_chr9_+_22215956_22216031	0.00274056	CDX1,2,4.p2	AK220359|9530077C05Rik|68283|RIKEN cDNA 9530077C05 gene	AK021129|9530077C05Rik|68283|RIKEN cDNA 9530077C05 gene	AK170604|9530077C05Rik|68283|RIKEN cDNA 9530077C05 gene	BC054761|9530077C05Rik|68283|RIKEN cDNA 9530077C05 gene	NM_026739|9530077C05Rik|68283|RIKEN cDNA 9530077C05 gene
mm9_v1_chr11_-_101646571_101646623	0.00222017	CDX1,2,4.p2	AK166136|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	AK144590|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	AK144538|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	NM_008815|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)
mm9_v1_chr19_+_56905201_56905201	0.00199291	CDX1,2,4.p2	AB183528|Tdrd1|83561|tudor domain containing 1	NM_001002241|Tdrd1|83561|tudor domain containing 1
mm9_v1_chr10_-_80827546_80827600	0.00194418	CDX1,2,4.p2	AK008872|4930404N11Rik|432479|RIKEN cDNA 4930404N11 gene
mm9_v1_chr1_-_39708086_39708119	0.0019172	CDX1,2,4.p2	AK134861|Creg2|263764|cellular repressor of E1A-stimulated genes 2
mm9_v1_chr8_-_74998992_74999131	0.0016815	CDX1,2,4.p2	BC032191|Cherp|27967|calcium homeostasis endoplasmic reticulum protein	AK144328|Cherp|27967|calcium homeostasis endoplasmic reticulum protein	AF536541|Cherp|27967|calcium homeostasis endoplasmic reticulum protein	AK049765|Cherp|27967|calcium homeostasis endoplasmic reticulum protein	AK017525|Cherp|27967|calcium homeostasis endoplasmic reticulum protein	BC020488|Cherp|27967|calcium homeostasis endoplasmic reticulum protein	NM_138585|Cherp|27967|calcium homeostasis endoplasmic reticulum protein
mm9_v1_chr1_+_60965868_60966014	0.00167024	CDX1,2,4.p2	BC042741|Ctla4|12477|cytotoxic T-lymphocyte-associated protein 4	NM_009843|Ctla4|12477|cytotoxic T-lymphocyte-associated protein 4	AK138891|Ctla4|12477|cytotoxic T-lymphocyte-associated protein 4	X05719|Ctla4|12477|cytotoxic T-lymphocyte-associated protein 4	BC052683|Ctla4|12477|cytotoxic T-lymphocyte-associated protein 4	AB097214|Ctla4|12477|cytotoxic T-lymphocyte-associated protein 4
mm9_v1_chr7_-_148623725_148623772	0.00155779	CDX1,2,4.p2	BC050887|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	NM_026646|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm9_v1_chr19_-_11893431_11893451	0.00150656	CDX1,2,4.p2	AK171135|Stx3|20908|syntaxin 3
mm9_v1_chr1_+_78655014_78655014	0.0014216	CDX1,2,4.p2	AK029972|Utp14b|195434|UTP14, U3 small nucleolar ribonucleoprotein, homolog B (yeast)	NM_001136226|Utp14b|195434|UTP14, U3 small nucleolar ribonucleoprotein, homolog B (yeast)
mm9_v1_chr2_+_173563060_173563229	0.00134306	CDX1,2,4.p2	BC048231|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	NM_019806|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	BC057123|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK050632|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK081908|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AF115504|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK160925|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK172080|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chr11_+_106137853_106138061	0.00122983	CDX1,2,4.p2	AK076581|Tcam1|75870|testicular cell adhesion molecule 1	NM_029467|Tcam1|75870|testicular cell adhesion molecule 1	AK016263|Tcam1|75870|testicular cell adhesion molecule 1	BC050746|Tcam1|75870|testicular cell adhesion molecule 1
mm9_v1_chr9_-_20703010_20703071	0.00103765	CDX1,2,4.p2	U70733|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G	BC008511|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G	NM_016876|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G	AF108214|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G	AK168362|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G	AK038249|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G
mm9_v1_chr1_-_99024782_99024879	0.000796595	CDX1,2,4.p2	BC139066|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	BC139067|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK132668|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK161249|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK016647|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK029505|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	NM_028942|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1
mm9_v1_chr4_-_45120942_45121003	0.000481665	CDX1,2,4.p2	AK003822|Tomm5|68512|translocase of outer mitochondrial membrane 5 homolog (yeast)	NM_001099675|Tomm5|68512|translocase of outer mitochondrial membrane 5 homolog (yeast)	NM_001134646|Tomm5|68512|translocase of outer mitochondrial membrane 5 homolog (yeast)
mm9_v1_chr1_-_187153212_187153265	0.000406965	CDX1,2,4.p2	AK164435|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK051778|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK088965|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK036182|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK008042|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK043729|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	BC052403|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK050358|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK166832|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial
mm9_v1_chr1_+_82721477_82721553	0.00036698	CDX1,2,4.p2	BC059229|Mff|75734|mitochondrial fission factor	NM_029409|Mff|75734|mitochondrial fission factor	AK017226|Mff|75734|mitochondrial fission factor	AK083056|Mff|75734|mitochondrial fission factor	AK139649|Mff|75734|mitochondrial fission factor
mm9_v1_chr8_-_75005707_75005831	0.000340803	CDX1,2,4.p2	AK090231|Slc35e1|270066|solute carrier family 35, member E1	AK182855|Slc35e1|270066|solute carrier family 35, member E1
mm9_v1_chr7_-_53965879_53966065	0.000262764	CDX1,2,4.p2	BC019985|Saal1|78935|serum amyloid A-like 1	BC068127|Saal1|78935|serum amyloid A-like 1	AK019878|Saal1|78935|serum amyloid A-like 1	AK132193|Saal1|78935|serum amyloid A-like 1	NM_030233|Saal1|78935|serum amyloid A-like 1	AK030833|Saal1|78935|serum amyloid A-like 1	AK134418|Saal1|78935|serum amyloid A-like 1	AK033202|Saal1|78935|serum amyloid A-like 1	AK035874|Saal1|78935|serum amyloid A-like 1	BC087944|Saal1|78935|serum amyloid A-like 1
mm9_v1_chr16_-_17201556_17201596	0.000173849	CDX1,2,4.p2	AK165620|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	BC106149|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	BC093503|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	AK167847|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	BC049075|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	AJ130961|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	NM_009456|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	X97042|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	AK152522|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	AK007265|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3
mm9_v1_chr2_+_132641920_132642070	6.154e-05	CDX1,2,4.p2	AK012845|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK019268|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK133858|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	BC046780|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK017607|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	BC052070|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	NM_025676|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)
mm9_v1_chr8_+_74967757_74967859	4.59075e-05	CDX1,2,4.p2	AK133815|1700030K09Rik|72254|RIKEN cDNA 1700030K09 gene	NM_028170|1700030K09Rik|72254|RIKEN cDNA 1700030K09 gene	BC008558|1700030K09Rik|72254|RIKEN cDNA 1700030K09 gene	AK089918|1700030K09Rik|72254|RIKEN cDNA 1700030K09 gene
mm9_v1_chr11_+_117623703_117623821	2.79372e-05	CDX1,2,4.p2	AK137381|Tnrc6c|217351|trinucleotide repeat containing 6C
mm9_v1_chr14_-_21277869_21277886	2.56823e-05	CDX1,2,4.p2	AK178718|Anxa7|11750|annexin A7	AK178726|Anxa7|11750|annexin A7
