mm9_v1_chr8_-_26212588_26212598	16.2711	CTCF.p2	AK088395|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
mm9_v1_chr7_+_26471968_26472056	14.4731	CTCF.p2	AJ009862|Tgfb1|21803|transforming growth factor, beta 1	NM_011577|Tgfb1|21803|transforming growth factor, beta 1	AK144163|Tgfb1|21803|transforming growth factor, beta 1
mm9_v1_chr11_+_68245608_68245745	12.9762	CTCF.p2	AK089483|Pik3r5|320207|phosphoinositide-3-kinase, regulatory subunit 5, p101	AK089348|Pik3r5|320207|phosphoinositide-3-kinase, regulatory subunit 5, p101	AK171279|Pik3r5|320207|phosphoinositide-3-kinase, regulatory subunit 5, p101	NM_177320|Pik3r5|320207|phosphoinositide-3-kinase, regulatory subunit 5, p101	AK154643|Pik3r5|320207|phosphoinositide-3-kinase, regulatory subunit 5, p101	AK149847|Pik3r5|320207|phosphoinositide-3-kinase, regulatory subunit 5, p101
mm9_v1_chr3_-_107499129_107499327	12.3987	CTCF.p2	AB092504|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1	BC018218|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1
mm9_v1_chr17_-_35973192_35973216	12.3612	CTCF.p2	AK013283|Tubb5|22154|tubulin, beta 5	AK012365|Tubb5|22154|tubulin, beta 5
mm9_v1_chr11_+_62389367_62389600	12.2235	CTCF.p2	AK171222|Trpv2|22368|transient receptor potential cation channel, subfamily V, member 2	AK162841|Trpv2|22368|transient receptor potential cation channel, subfamily V, member 2
mm9_v1_chr11_-_120441643_120441696	11.9379	CTCF.p2	AK075656|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha
mm9_v1_chr11_-_107050573_107050694	11.8312	CTCF.p2	BC024874|Nol11|68979|nucleolar protein 11	AK005123|Nol11|68979|nucleolar protein 11	AK038696|Nol11|68979|nucleolar protein 11	AK078524|Nol11|68979|nucleolar protein 11	AK157743|Nol11|68979|nucleolar protein 11	AK076704|Nol11|68979|nucleolar protein 11	NM_001161329|Nol11|68979|nucleolar protein 11	NM_133702|Nol11|68979|nucleolar protein 11
mm9_v1_chr7_-_53970378_53970477	11.7489	CTCF.p2	M25467|Saa3|20210|serum amyloid A 3	X03479|Saa3|20210|serum amyloid A 3
mm9_v1_chr11_-_45758413_45758456	10.6007	CTCF.p2	AF514309|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	BC094286|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	AK143661|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	AK082292|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	NM_028185|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11
mm9_v1_chr2_+_170336729_170336729	10.5631	CTCF.p2	AK136249|Pfdn4|109054|prefoldin 4	NM_001110152|Pfdn4|109054|prefoldin 4
mm9_v1_chr3_-_94946256_94946295	10.3402	CTCF.p2	BC055879|Tnfaip8l2|69769|tumor necrosis factor, alpha-induced protein 8-like 2	BC094616|Tnfaip8l2|69769|tumor necrosis factor, alpha-induced protein 8-like 2	AK007540|Tnfaip8l2|69769|tumor necrosis factor, alpha-induced protein 8-like 2	NM_027206|Tnfaip8l2|69769|tumor necrosis factor, alpha-induced protein 8-like 2
mm9_v1_chr10_-_6373309_6373324	10.3314	CTCF.p2	BC058265|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
mm9_v1_chr2_+_90936845_90937066	10.2258	CTCF.p2	AK154945|Sfpi1|20375|SFFV proviral integration 1	AK155085|Sfpi1|20375|SFFV proviral integration 1	AK153524|Sfpi1|20375|SFFV proviral integration 1	AK142246|Sfpi1|20375|SFFV proviral integration 1	M38252|Sfpi1|20375|SFFV proviral integration 1	NM_011355|Sfpi1|20375|SFFV proviral integration 1	M32370|Sfpi1|20375|SFFV proviral integration 1	BC003815|Sfpi1|20375|SFFV proviral integration 1	L03215|Sfpi1|20375|SFFV proviral integration 1
mm9_v1_chr10_-_6373388_6373465	10.1704	CTCF.p2	AK075931|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK160025|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK036284|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK028211|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK038579|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	NM_001170785|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	NM_001170786|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	NM_172308|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
mm9_v1_chr17_-_35972880_35972916	10.0793	CTCF.p2	AK169398|Tubb5|22154|tubulin, beta 5
mm9_v1_chr19_+_46379216_46379289	9.71492	CTCF.p2	NM_001177369|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AK144994|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AK137680|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AK148160|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AK150012|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AF155372|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100
mm9_v1_chr3_-_129763586_129763646	9.56088	CTCF.p2	BC046556|Sec24b|99683|Sec24 related gene family, member B (S. cerevisiae)
mm9_v1_chr2_+_170336930_170336945	9.23556	CTCF.p2	AK007940|Pfdn4|109054|prefoldin 4	BC048510|Pfdn4|109054|prefoldin 4
mm9_v1_chr19_-_6015778_6015825	8.83029	CTCF.p2	AK171405|Capn1|12333|calpain 1	NM_001110504|Capn1|12333|calpain 1
mm9_v1_chr17_+_34341417_34341460	8.82064	CTCF.p2	NM_011530|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK159200|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
mm9_v1_chr4_+_140257340_140257464	8.73518	CTCF.p2	NM_173867|Rcc2|108911|regulator of chromosome condensation 2	BC060624|Rcc2|108911|regulator of chromosome condensation 2	AK076040|Rcc2|108911|regulator of chromosome condensation 2	BC086666|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr17_+_34341467_34341526	8.701	CTCF.p2	AK145234|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151657|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK161091|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	BC051257|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK020022|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK079667|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151376|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151483|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK153287|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	BC005578|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
mm9_v1_chr10_-_10277663_10277713	8.69679	CTCF.p2	AK078874|Rab32|67844|RAB32, member RAS oncogene family
mm9_v1_chr5_-_110698882_110698900	8.69018	CTCF.p2	AK012159|Pgam5|72542|phosphoglycerate mutase family member 5	AK034588|Pgam5|72542|phosphoglycerate mutase family member 5	BC138924|Pgam5|72542|phosphoglycerate mutase family member 5	BC138925|Pgam5|72542|phosphoglycerate mutase family member 5	BC145467|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr5_-_110698874_110698881	8.38942	CTCF.p2	AK049246|Pgam5|72542|phosphoglycerate mutase family member 5	AK169643|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr7_-_52689833_52689978	8.38049	CTCF.p2	AK159112|Ruvbl2|20174|RuvB-like protein 2	NM_011304|Ruvbl2|20174|RuvB-like protein 2
mm9_v1_chr10_-_10277885_10278075	8.29016	CTCF.p2	AB232627|Rab32|67844|RAB32, member RAS oncogene family	AY135650|Rab32|67844|RAB32, member RAS oncogene family	BC016409|Rab32|67844|RAB32, member RAS oncogene family	BC055945|Rab32|67844|RAB32, member RAS oncogene family	AK163620|Rab32|67844|RAB32, member RAS oncogene family	AK151543|Rab32|67844|RAB32, member RAS oncogene family	AK088661|Rab32|67844|RAB32, member RAS oncogene family	NM_026405|Rab32|67844|RAB32, member RAS oncogene family	AK012701|Rab32|67844|RAB32, member RAS oncogene family	AK159102|Rab32|67844|RAB32, member RAS oncogene family	AK159901|Rab32|67844|RAB32, member RAS oncogene family
mm9_v1_chr6_-_89312545_89312689	8.14616	CTCF.p2	D86948|Plxna1|18844|plexin A1	NM_008881|Plxna1|18844|plexin A1
mm9_v1_chr6_-_125112509_125113407	8.14064	CTCF.p2	AK160495|Gm10481|433845|glyceraldehyde-3-phosphate dehydrogenase pseudogene	BC091736|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK178680|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK193664|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK193983|Gm5523|433273|glyceraldehyde-3-phosphate dehydrogenase pseudogene	AK200636|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK188672|Gm5523|433273|glyceraldehyde-3-phosphate dehydrogenase pseudogene	AK211452|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	DQ403054|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase
mm9_v1_chr10_-_61738537_61738571	8.06486	CTCF.p2	U89409|Hk1|15275|hexokinase 1	AK218898|Hk1|15275|hexokinase 1
mm9_v1_chr19_-_4305954_4306041	8.05277	CTCF.p2	BC053922|Adrbk1|110355|adrenergic receptor kinase, beta 1	NM_130863|Adrbk1|110355|adrenergic receptor kinase, beta 1	BC003196|Adrbk1|110355|adrenergic receptor kinase, beta 1	AF333028|Adrbk1|110355|adrenergic receptor kinase, beta 1
mm9_v1_chr11_+_94491055_94491166	8.0274	CTCF.p2	AK159374|Lrrc59|98238|leucine rich repeat containing 59	AK159552|Lrrc59|98238|leucine rich repeat containing 59	AK166576|Lrrc59|98238|leucine rich repeat containing 59	AK053450|Lrrc59|98238|leucine rich repeat containing 59	BC006877|Lrrc59|98238|leucine rich repeat containing 59	NM_133807|Lrrc59|98238|leucine rich repeat containing 59	AK169390|Lrrc59|98238|leucine rich repeat containing 59	BC066172|Lrrc59|98238|leucine rich repeat containing 59	AK167604|Lrrc59|98238|leucine rich repeat containing 59	AK169250|Lrrc59|98238|leucine rich repeat containing 59
mm9_v1_chr5_-_110698814_110698873	7.96243	CTCF.p2	BC052179|Pgam5|72542|phosphoglycerate mutase family member 5	BC021317|Pgam5|72542|phosphoglycerate mutase family member 5	AK162266|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr13_-_55637866_55638018	7.92404	CTCF.p2	BC011308|Ddx41|72935|DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	BC023711|Ddx41|72935|DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	AK156957|Ddx41|72935|DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	AK168043|Ddx41|72935|DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	AK151427|Ddx41|72935|DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	AK013586|Ddx41|72935|DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	NM_134059|Ddx41|72935|DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
mm9_v1_chr8_-_124956759_124956863	7.86835	CTCF.p2	M31775|Cyba|13057|cytochrome b-245, alpha polypeptide	EU791539|Cyba|13057|cytochrome b-245, alpha polypeptide	BC026791|Cyba|13057|cytochrome b-245, alpha polypeptide	AK018713|Cyba|13057|cytochrome b-245, alpha polypeptide	AK131580|Cyba|13057|cytochrome b-245, alpha polypeptide	AK171748|Cyba|13057|cytochrome b-245, alpha polypeptide	AK078854|Cyba|13057|cytochrome b-245, alpha polypeptide	AK021200|Cyba|13057|cytochrome b-245, alpha polypeptide	AK152414|Cyba|13057|cytochrome b-245, alpha polypeptide	NM_007806|Cyba|13057|cytochrome b-245, alpha polypeptide
mm9_v1_chr8_+_73988823_73988883	7.7214	CTCF.p2	NM_053162|Mrpl34|94065|mitochondrial ribosomal protein L34	BC052086|Mrpl34|94065|mitochondrial ribosomal protein L34	AB049653|Mrpl34|94065|mitochondrial ribosomal protein L34	BC056979|Mrpl34|94065|mitochondrial ribosomal protein L34	AK018724|Mrpl34|94065|mitochondrial ribosomal protein L34	AK170156|Mrpl34|94065|mitochondrial ribosomal protein L34
mm9_v1_chr11_-_76577056_76577075	7.56606	CTCF.p2	BC008542|Gosr1|53334|golgi SNAP receptor complex member 1	NM_016810|Gosr1|53334|golgi SNAP receptor complex member 1	AK134515|Gosr1|53334|golgi SNAP receptor complex member 1	AK133836|Gosr1|53334|golgi SNAP receptor complex member 1	AK161386|Gosr1|53334|golgi SNAP receptor complex member 1	AF079901|Gosr1|53334|golgi SNAP receptor complex member 1	BC051661|Gosr1|53334|golgi SNAP receptor complex member 1
mm9_v1_chr11_+_62462273_62462304	7.56426	CTCF.p2	AK131977|Mmgt2|216829|membrane magnesium transporter 2	AK004099|Mmgt2|216829|membrane magnesium transporter 2
mm9_v1_chr9_-_108962219_108962241	7.56044	CTCF.p2	AF319574|Trex1|22040|three prime repair exonuclease 1	AF151106|Trex1|22040|three prime repair exonuclease 1	NM_011637|Trex1|22040|three prime repair exonuclease 1	BC011133|Trex1|22040|three prime repair exonuclease 1
mm9_v1_chr11_+_62462314_62462336	7.46718	CTCF.p2	BC096408|Mmgt2|216829|membrane magnesium transporter 2
mm9_v1_chr5_-_110698902_110698941	7.45012	CTCF.p2	AK146216|Pgam5|72542|phosphoglycerate mutase family member 5	NM_001163538|Pgam5|72542|phosphoglycerate mutase family member 5	NM_028273|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr3_+_90417072_90417127	7.41615	CTCF.p2	AK008241|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	AK008941|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	AK151587|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	M37761|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	X52278|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	AK150408|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	AK151144|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	AF549497|S100a6|20200|S100 calcium binding protein A6 (calcyclin)
mm9_v1_chr2_+_164595389_164595402	7.40988	CTCF.p2	AK160740|Ube2c|68612|ubiquitin-conjugating enzyme E2C
mm9_v1_chr2_+_70499545_70499765	7.37616	CTCF.p2	NM_027352|Gorasp2|70231|golgi reassembly stacking protein 2	AK033413|Gorasp2|70231|golgi reassembly stacking protein 2	AK077683|Gorasp2|70231|golgi reassembly stacking protein 2	AK148337|Gorasp2|70231|golgi reassembly stacking protein 2	AK153555|Gorasp2|70231|golgi reassembly stacking protein 2	AK167823|Gorasp2|70231|golgi reassembly stacking protein 2	AK168928|Gorasp2|70231|golgi reassembly stacking protein 2	AK159469|Gorasp2|70231|golgi reassembly stacking protein 2	AK010664|Gorasp2|70231|golgi reassembly stacking protein 2	AK152603|Gorasp2|70231|golgi reassembly stacking protein 2	BC024982|Gorasp2|70231|golgi reassembly stacking protein 2	AK002515|Gorasp2|70231|golgi reassembly stacking protein 2	AK044691|Gorasp2|70231|golgi reassembly stacking protein 2	AK088239|Gorasp2|70231|golgi reassembly stacking protein 2	AK151843|Gorasp2|70231|golgi reassembly stacking protein 2	AK152475|Gorasp2|70231|golgi reassembly stacking protein 2	AK152544|Gorasp2|70231|golgi reassembly stacking protein 2	AK153049|Gorasp2|70231|golgi reassembly stacking protein 2	AK169382|Gorasp2|70231|golgi reassembly stacking protein 2	AK077153|Gorasp2|70231|golgi reassembly stacking protein 2	BC005600|Gorasp2|70231|golgi reassembly stacking protein 2	AK077706|Gorasp2|70231|golgi reassembly stacking protein 2
mm9_v1_chr17_-_27702625_27702715	7.14878	CTCF.p2	BC028464|AI413582|106672|expressed sequence AI413582	AK131681|AI413582|106672|expressed sequence AI413582	AK131593|AI413582|106672|expressed sequence AI413582	NM_001002895|AI413582|106672|expressed sequence AI413582
mm9_v1_chr7_+_125883784_125883784	7.09984	CTCF.p2	NM_027815|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene
mm9_v1_chr12_+_25393083_25393272	7.05342	CTCF.p2	BC085136|Rrm2|20135|ribonucleotide reductase M2	NM_009104|Rrm2|20135|ribonucleotide reductase M2	AK142027|Rrm2|20135|ribonucleotide reductase M2	AK161643|Rrm2|20135|ribonucleotide reductase M2	AK167204|Rrm2|20135|ribonucleotide reductase M2	AK168117|Rrm2|20135|ribonucleotide reductase M2	AK168994|Rrm2|20135|ribonucleotide reductase M2	AK168205|Rrm2|20135|ribonucleotide reductase M2	M14223|Rrm2|20135|ribonucleotide reductase M2	AK088907|Rrm2|20135|ribonucleotide reductase M2	AK167078|Rrm2|20135|ribonucleotide reductase M2	AK147111|Rrm2|20135|ribonucleotide reductase M2	AK188716|Rrm2|20135|ribonucleotide reductase M2	AK189805|Rrm2|20135|ribonucleotide reductase M2
mm9_v1_chr11_-_62462024_62462096	7.02149	CTCF.p2	BC053455|BC046404|192976|cDNA sequence BC046404	NM_198861|BC046404|192976|cDNA sequence BC046404
mm9_v1_chr2_+_164595415_164595435	6.96189	CTCF.p2	AK003722|Ube2c|68612|ubiquitin-conjugating enzyme E2C	AK136186|Ube2c|68612|ubiquitin-conjugating enzyme E2C	NM_026785|Ube2c|68612|ubiquitin-conjugating enzyme E2C
mm9_v1_chr3_+_90416815_90416815	6.9325	CTCF.p2	NM_011313|S100a6|20200|S100 calcium binding protein A6 (calcyclin)
mm9_v1_chr7_-_111613624_111613716	6.88424	CTCF.p2	AF220014|Trim30a|20128|tripartite motif-containing 30A	J03776|Trim30a|20128|tripartite motif-containing 30A	BC005447|Trim30a|20128|tripartite motif-containing 30A	AK134144|Trim30a|20128|tripartite motif-containing 30A	AK089726|Trim30a|20128|tripartite motif-containing 30A	AK137506|Trim30a|20128|tripartite motif-containing 30A	NM_009099|Trim30a|20128|tripartite motif-containing 30A	AK138249|Trim30a|20128|tripartite motif-containing 30A
mm9_v1_chr9_-_57492978_57493044	6.7801	CTCF.p2	BC018394|Csk|12988|c-src tyrosine kinase	NM_007783|Csk|12988|c-src tyrosine kinase	AK156058|Csk|12988|c-src tyrosine kinase	AK170815|Csk|12988|c-src tyrosine kinase	BC052006|Csk|12988|c-src tyrosine kinase
mm9_v1_chr14_-_77436363_77436492	6.69332	CTCF.p2	AK152154|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene	AK033565|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene	NM_172488|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene	AK153349|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene
mm9_v1_chr10_+_87841876_87842156	6.65889	CTCF.p2	BC060638|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	AK140867|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	AK173132|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	NM_001004164|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
mm9_v1_chr2_+_167514414_167514452	6.57098	CTCF.p2	NM_009883|Cebpb|12608|CCAAT/enhancer binding protein (C/EBP), beta	X62600|Cebpb|12608|CCAAT/enhancer binding protein (C/EBP), beta
mm9_v1_chr1_+_34529567_34529633	6.57092	CTCF.p2	AK014043|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18
mm9_v1_chr13_-_101262544_101262571	6.52285	CTCF.p2	NM_022011|Gtf2h2|23894|general transcription factor II H, polypeptide 2
mm9_v1_chr11_-_76577079_76577091	6.48354	CTCF.p2	AK147799|Gosr1|53334|golgi SNAP receptor complex member 1	AK154972|Gosr1|53334|golgi SNAP receptor complex member 1
mm9_v1_chr8_-_26212203_26212230	6.47353	CTCF.p2	BC010215|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	AF286161|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
mm9_v1_chr19_-_4306221_4306389	6.43268	CTCF.p2	AK155691|Adrbk1|110355|adrenergic receptor kinase, beta 1
mm9_v1_chr7_-_111656285_111656372	6.41429	CTCF.p2	AF220015|Trim30a|20128|tripartite motif-containing 30A	BC056631|Trim30d|209387|tripartite motif-containing 30D	AK164938|Trim30d|209387|tripartite motif-containing 30D	AK136456|Trim30d|209387|tripartite motif-containing 30D	NM_001167828|Trim30d|209387|tripartite motif-containing 30D	NM_199146|Trim30d|209387|tripartite motif-containing 30D
mm9_v1_chr1_+_173433608_173433701	6.37813	CTCF.p2	AK048243|Refbp2|56009|RNA and export factor binding protein 2	NM_019484|Refbp2|56009|RNA and export factor binding protein 2	BC099405|Refbp2|56009|RNA and export factor binding protein 2
mm9_v1_chr3_-_89802501_89802651	6.36256	CTCF.p2	AF465243|Hax1|23897|HCLS1 associated X-1	BC006688|Hax1|23897|HCLS1 associated X-1	BC147481|Hax1|23897|HCLS1 associated X-1	BC098225|Hax1|23897|HCLS1 associated X-1	AK002256|Hax1|23897|HCLS1 associated X-1	AK135138|Hax1|23897|HCLS1 associated X-1	AF023482|Hax1|23897|HCLS1 associated X-1	AF023483|Hax1|23897|HCLS1 associated X-1	NM_011826|Hax1|23897|HCLS1 associated X-1	AK010633|Hax1|23897|HCLS1 associated X-1	AK088746|Hax1|23897|HCLS1 associated X-1
mm9_v1_chr15_+_97614772_97615017	6.31212	CTCF.p2	AK089421|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	NM_026353|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK155824|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK170393|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK159879|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK159892|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK007888|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK150552|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	BC022913|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK002729|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK138729|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK168636|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK088485|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK159898|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AB041659|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1
mm9_v1_chr15_-_89204248_89204287	6.24877	CTCF.p2	BC019554|Sco2|100126824|SCO cytochrome oxidase deficient homolog 2 (yeast)	NM_001111288|Sco2|100126824|SCO cytochrome oxidase deficient homolog 2 (yeast)	AK013765|Sco2|100126824|SCO cytochrome oxidase deficient homolog 2 (yeast)
mm9_v1_chr4_-_140634151_140634281	6.23233	CTCF.p2	AK197123|Necap2|66147|NECAP endocytosis associated 2	AK213029|Necap2|66147|NECAP endocytosis associated 2	AK218572|Necap2|66147|NECAP endocytosis associated 2	AK003463|Necap2|66147|NECAP endocytosis associated 2	AK172538|Necap2|66147|NECAP endocytosis associated 2	AK156566|Necap2|66147|NECAP endocytosis associated 2	AK170987|Necap2|66147|NECAP endocytosis associated 2	AK145874|Necap2|66147|NECAP endocytosis associated 2	AK155871|Necap2|66147|NECAP endocytosis associated 2	BC037069|Necap2|66147|NECAP endocytosis associated 2	NM_025383|Necap2|66147|NECAP endocytosis associated 2
mm9_v1_chr2_+_29475402_29475429	6.18567	CTCF.p2	BC129881|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr15_-_102181072_102181189	6.08244	CTCF.p2	AK134406|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK034591|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	BC018191|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK083401|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK166118|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK165243|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK088247|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK083537|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK079849|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	BC025501|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK169523|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK087134|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	NM_153416|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia
mm9_v1_chr8_-_42502362_42502487	6.0755	CTCF.p2	AK079229|Frg1|14300|FSHD region gene 1	AK077107|Frg1|14300|FSHD region gene 1	BC002027|Frg1|14300|FSHD region gene 1	U62105|Frg1|14300|FSHD region gene 1	NM_013522|Frg1|14300|FSHD region gene 1
mm9_v1_chr9_-_57493393_57493475	6.01579	CTCF.p2	AK136876|Csk|12988|c-src tyrosine kinase
mm9_v1_chr3_+_89534639_89534732	5.9951	CTCF.p2	NM_001146296|Adar|56417|adenosine deaminase, RNA-specific	NM_019655|Adar|56417|adenosine deaminase, RNA-specific	AK089451|Adar|56417|adenosine deaminase, RNA-specific	BC042505|Adar|56417|adenosine deaminase, RNA-specific	AF052506|Adar|56417|adenosine deaminase, RNA-specific	AF291050|Adar|56417|adenosine deaminase, RNA-specific	AF291875|Adar|56417|adenosine deaminase, RNA-specific	AF291876|Adar|56417|adenosine deaminase, RNA-specific	AF291877|Adar|56417|adenosine deaminase, RNA-specific	CT010323|Adar|56417|adenosine deaminase, RNA-specific
mm9_v1_chr3_+_104591955_104591985	5.99458	CTCF.p2	AK160650|Rhoc|11853|ras homolog gene family, member C	X80638|Rhoc|11853|ras homolog gene family, member C	BC004627|Rhoc|11853|ras homolog gene family, member C
mm9_v1_chr10_-_18735154_18735215	5.96573	CTCF.p2	AK153238|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK088297|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK151921|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC050259|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC054806|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC060221|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	NM_009397|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3
mm9_v1_chr17_-_35089399_35089425	5.81901	CTCF.p2	BC058123|1110038B12Rik|68763|RIKEN cDNA 1110038B12 gene	AK003073|1110038B12Rik|68763|RIKEN cDNA 1110038B12 gene	AK004150|1110038B12Rik|68763|RIKEN cDNA 1110038B12 gene	AK002372|1110038B12Rik|68763|RIKEN cDNA 1110038B12 gene
mm9_v1_chr18_+_38456315_38456361	5.77607	CTCF.p2	AK009783|Rnf14|56736|ring finger protein 14	AK010162|Rnf14|56736|ring finger protein 14	BC094250|Rnf14|56736|ring finger protein 14	AF249667|Rnf14|56736|ring finger protein 14	AK038986|Rnf14|56736|ring finger protein 14	BC054841|Rnf14|56736|ring finger protein 14
mm9_v1_chr1_+_173433762_173433787	5.75098	CTCF.p2	AJ252141|Refbp2|56009|RNA and export factor binding protein 2
mm9_v1_chr17_-_56175896_56176097	5.68782	CTCF.p2	AK162715|Sh3gl1|20405|SH3-domain GRB2-like 1	BC138602|Sh3gl1|20405|SH3-domain GRB2-like 1	BC138603|Sh3gl1|20405|SH3-domain GRB2-like 1	BC145345|Sh3gl1|20405|SH3-domain GRB2-like 1	NM_013664|Sh3gl1|20405|SH3-domain GRB2-like 1	U58885|Sh3gl1|20405|SH3-domain GRB2-like 1	AK167505|Sh3gl1|20405|SH3-domain GRB2-like 1	AK154836|Sh3gl1|20405|SH3-domain GRB2-like 1
mm9_v1_chr18_+_38456364_38456458	5.64558	CTCF.p2	AK011316|Rnf14|56736|ring finger protein 14	BC049079|Rnf14|56736|ring finger protein 14	NM_001164621|Rnf14|56736|ring finger protein 14
mm9_v1_chr2_+_167514489_167514504	5.5965	CTCF.p2	M61007|Cebpb|12608|CCAAT/enhancer binding protein (C/EBP), beta
mm9_v1_chr3_-_142544883_142544984	5.58131	CTCF.p2	AK046248|Pkn2|109333|protein kinase N2	AK171092|Pkn2|109333|protein kinase N2	BC052073|Pkn2|109333|protein kinase N2	AK077910|Pkn2|109333|protein kinase N2	AK028469|Pkn2|109333|protein kinase N2	AK049713|Pkn2|109333|protein kinase N2	AK133298|Pkn2|109333|protein kinase N2	NM_178654|Pkn2|109333|protein kinase N2
mm9_v1_chr3_+_104591946_104591954	5.55733	CTCF.p2	AK011599|Rhoc|11853|ras homolog gene family, member C	NM_007484|Rhoc|11853|ras homolog gene family, member C	AK152802|Rhoc|11853|ras homolog gene family, member C
mm9_v1_chr5_+_64550623_64550689	5.52453	CTCF.p2	AK122445|Tbc1d1|57915|TBC1 domain family, member 1
mm9_v1_chr18_-_84849981_84849981	5.52169	CTCF.p2	AK168856|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)
mm9_v1_chr14_-_55036515_55036535	5.5037	CTCF.p2	AJ130943|Slc7a7|20540|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	AK150950|Slc7a7|20540|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	AK151718|Slc7a7|20540|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	NM_011405|Slc7a7|20540|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm9_v1_chr8_-_109948891_109948958	5.49402	CTCF.p2	BC054835|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	AK054034|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	AK075755|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	BC117992|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	BC117993|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	NM_026277|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	BC034900|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	AK021194|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	BC103793|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	AK165521|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)
mm9_v1_chr2_-_35192443_35192541	5.47817	CTCF.p2	AF093620|Stom|13830|stomatin	BC003789|Stom|13830|stomatin	AK149821|Stom|13830|stomatin	AK151129|Stom|13830|stomatin	AK077435|Stom|13830|stomatin	AK139242|Stom|13830|stomatin	AK143724|Stom|13830|stomatin	AK148975|Stom|13830|stomatin	AK149689|Stom|13830|stomatin	AK149991|Stom|13830|stomatin	NM_013515|Stom|13830|stomatin	U17297|Stom|13830|stomatin
mm9_v1_chr3_-_129763648_129763693	5.46568	CTCF.p2	BC057355|Sec24b|99683|Sec24 related gene family, member B (S. cerevisiae)
mm9_v1_chr19_-_24355054_24355107	5.46041	CTCF.p2	BC058533|Fxn|14297|frataxin	BC125337|Fxn|14297|frataxin	BC132337|Fxn|14297|frataxin	NM_008044|Fxn|14297|frataxin	U95736|Fxn|14297|frataxin	AK160458|Fxn|14297|frataxin	AK148147|Fxn|14297|frataxin
mm9_v1_chr14_+_56222821_56222821	5.43219	CTCF.p2	NM_001159417|Irf9|16391|interferon regulatory factor 9	NM_008394|Irf9|16391|interferon regulatory factor 9
mm9_v1_chr19_+_9026020_9026327	5.43062	CTCF.p2	AK199642|Mta2|23942|metastasis-associated gene family, member 2	AK219174|Mta2|23942|metastasis-associated gene family, member 2	AK195366|Mta2|23942|metastasis-associated gene family, member 2	AK209683|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chrX_-_6998125_6998251	5.40468	CTCF.p2	BC042200|2010204K13Rik|68355|RIKEN cDNA 2010204K13 gene	BC061056|2010204K13Rik|68355|RIKEN cDNA 2010204K13 gene	AK077356|2010204K13Rik|68355|RIKEN cDNA 2010204K13 gene
mm9_v1_chr3_-_107499460_107499466	5.36513	CTCF.p2	NM_145542|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1
mm9_v1_chr2_-_91803660_91803893	5.3189	CTCF.p2	NM_138306|Dgkz|104418|diacylglycerol kinase zeta	BC049228|Dgkz|104418|diacylglycerol kinase zeta
mm9_v1_chr3_-_129763732_129763824	5.30524	CTCF.p2	BC046776|Sec24b|99683|Sec24 related gene family, member B (S. cerevisiae)	NM_207209|Sec24b|99683|Sec24 related gene family, member B (S. cerevisiae)
mm9_v1_chr7_-_52391419_52391530	5.28344	CTCF.p2	EU274583|Flt3l|14256|FMS-like tyrosine kinase 3 ligand	S76459|Flt3l|14256|FMS-like tyrosine kinase 3 ligand	L23636|Flt3l|14256|FMS-like tyrosine kinase 3 ligand
mm9_v1_chrX_-_7000037_7000113	5.25545	CTCF.p2	BC072610|2010204K13Rik|68355|RIKEN cDNA 2010204K13 gene	AF038507|2010204K13Rik|68355|RIKEN cDNA 2010204K13 gene	AK008437|2010204K13Rik|68355|RIKEN cDNA 2010204K13 gene
mm9_v1_chr4_+_124392019_124392126	5.24495	CTCF.p2	AK169324|Sf3a3|75062|splicing factor 3a, subunit 3	AK030743|Sf3a3|75062|splicing factor 3a, subunit 3	BC092058|Sf3a3|75062|splicing factor 3a, subunit 3	AK168966|Sf3a3|75062|splicing factor 3a, subunit 3	AK161646|Sf3a3|75062|splicing factor 3a, subunit 3	BC009141|Sf3a3|75062|splicing factor 3a, subunit 3	NM_029157|Sf3a3|75062|splicing factor 3a, subunit 3	AK150733|Sf3a3|75062|splicing factor 3a, subunit 3	AK151141|Sf3a3|75062|splicing factor 3a, subunit 3	AK151382|Sf3a3|75062|splicing factor 3a, subunit 3	AK015776|Sf3a3|75062|splicing factor 3a, subunit 3
mm9_v1_chr11_-_70796432_70796469	5.21944	CTCF.p2	AK010601|C1qbp|12261|complement component 1, q subcomponent binding protein	AF300619|C1qbp|12261|complement component 1, q subcomponent binding protein	AJ001101|C1qbp|12261|complement component 1, q subcomponent binding protein
mm9_v1_chr18_+_38456280_38456312	5.21337	CTCF.p2	NM_001164622|Rnf14|56736|ring finger protein 14	NM_020012|Rnf14|56736|ring finger protein 14
mm9_v1_chr4_-_46614726_46614844	5.21198	CTCF.p2	AK045728|Coro2a|107684|coronin, actin binding protein 2A	AK033455|Coro2a|107684|coronin, actin binding protein 2A	AK030971|Coro2a|107684|coronin, actin binding protein 2A	AK154247|Coro2a|107684|coronin, actin binding protein 2A	AK170184|Coro2a|107684|coronin, actin binding protein 2A	AK044060|Coro2a|107684|coronin, actin binding protein 2A	AK152490|Coro2a|107684|coronin, actin binding protein 2A	AK153134|Coro2a|107684|coronin, actin binding protein 2A	AK054394|Coro2a|107684|coronin, actin binding protein 2A	NM_001164804|Coro2a|107684|coronin, actin binding protein 2A
mm9_v1_chr7_-_4610179_4610267	5.18955	CTCF.p2	BC141039|Ppp6r1|243819|protein phosphatase 6, regulatory subunit 1
mm9_v1_chr2_+_29475234_29475393	5.15739	CTCF.p2	AK147468|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147470|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_001039086|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_001039087|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_054050|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147696|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147506|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AF348669|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr2_-_94278303_94278325	5.10916	CTCF.p2	AK137466|Api5|11800|apoptosis inhibitor 5	NM_007466|Api5|11800|apoptosis inhibitor 5
mm9_v1_chr7_-_4610551_4610664	5.1023	CTCF.p2	BC053076|Ppp6r1|243819|protein phosphatase 6, regulatory subunit 1	NM_172894|Ppp6r1|243819|protein phosphatase 6, regulatory subunit 1	AK080891|Ppp6r1|243819|protein phosphatase 6, regulatory subunit 1
mm9_v1_chr1_+_193399604_193399618	5.1013	CTCF.p2	AK085362|Ints7|77065|integrator complex subunit 7	AK086462|Ints7|77065|integrator complex subunit 7	NM_178632|Ints7|77065|integrator complex subunit 7	AK040344|Ints7|77065|integrator complex subunit 7
mm9_v1_chr13_+_95746298_95746380	5.07776	CTCF.p2	AK082348|Wdr41|218460|WD repeat domain 41	NM_172590|Wdr41|218460|WD repeat domain 41	AK046853|Wdr41|218460|WD repeat domain 41	AK149993|Wdr41|218460|WD repeat domain 41
mm9_v1_chr5_-_137943570_137943661	5.03235	CTCF.p2	BC010780|Pop7|74097|processing of precursor 7, ribonuclease P family, (S. cerevisiae)	AK002782|Pop7|74097|processing of precursor 7, ribonuclease P family, (S. cerevisiae)	NM_028753|Pop7|74097|processing of precursor 7, ribonuclease P family, (S. cerevisiae)	AK162268|Pop7|74097|processing of precursor 7, ribonuclease P family, (S. cerevisiae)
mm9_v1_chr9_-_31019412_31019424	5.02592	CTCF.p2	AK164012|Aplp2|11804|amyloid beta (A4) precursor-like protein 2
mm9_v1_chr16_-_20426357_20426468	5.02231	CTCF.p2	BC042581|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	AB019003|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	BC090629|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	BC061132|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	NM_013790|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	NM_176839|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm9_v1_chr2_+_167514460_167514473	5.00288	CTCF.p2	AK143374|Cebpb|12608|CCAAT/enhancer binding protein (C/EBP), beta
mm9_v1_chr4_-_131901576_131901664	4.94668	CTCF.p2	BC019807|Rcc1|100088|regulator of chromosome condensation 1	AK155225|Rcc1|100088|regulator of chromosome condensation 1	AK150610|Rcc1|100088|regulator of chromosome condensation 1	AK153193|Rcc1|100088|regulator of chromosome condensation 1	AK153994|Rcc1|100088|regulator of chromosome condensation 1	AK150153|Rcc1|100088|regulator of chromosome condensation 1	BC057645|Rcc1|100088|regulator of chromosome condensation 1	AK076089|Rcc1|100088|regulator of chromosome condensation 1	NM_001197082|Rcc1|100088|regulator of chromosome condensation 1	NM_133878|Rcc1|100088|regulator of chromosome condensation 1
mm9_v1_chr11_-_70796471_70796535	4.85907	CTCF.p2	AK010746|C1qbp|12261|complement component 1, q subcomponent binding protein	BC038075|C1qbp|12261|complement component 1, q subcomponent binding protein	AK169764|C1qbp|12261|complement component 1, q subcomponent binding protein	AK011868|C1qbp|12261|complement component 1, q subcomponent binding protein	NM_007573|C1qbp|12261|complement component 1, q subcomponent binding protein
mm9_v1_chr4_-_45120942_45121003	4.84584	CTCF.p2	AK003822|Tomm5|68512|translocase of outer mitochondrial membrane 5 homolog (yeast)	NM_001099675|Tomm5|68512|translocase of outer mitochondrial membrane 5 homolog (yeast)	NM_001134646|Tomm5|68512|translocase of outer mitochondrial membrane 5 homolog (yeast)
mm9_v1_chrX_+_151696991_151697138	4.84291	CTCF.p2	AK168713|Acot9|56360|acyl-CoA thioesterase 9	NM_019736|Acot9|56360|acyl-CoA thioesterase 9	AK076513|Acot9|56360|acyl-CoA thioesterase 9	BC021763|Acot9|56360|acyl-CoA thioesterase 9	AK002892|Acot9|56360|acyl-CoA thioesterase 9	AK009717|Acot9|56360|acyl-CoA thioesterase 9	AK088082|Acot9|56360|acyl-CoA thioesterase 9	AK170876|Acot9|56360|acyl-CoA thioesterase 9	AJ238893|Acot9|56360|acyl-CoA thioesterase 9	AB028898|Acot9|56360|acyl-CoA thioesterase 9
mm9_v1_chr14_+_56223001_56223063	4.82471	CTCF.p2	U51992|Irf9|16391|interferon regulatory factor 9	BC005435|Irf9|16391|interferon regulatory factor 9
mm9_v1_chrX_+_155970637_155970677	4.7425	CTCF.p2	BC075674|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene	AK145159|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene
mm9_v1_chr4_-_120642197_120642226	4.73396	CTCF.p2	AB029329|Smap2|69780|stromal membrane-associated GTPase-activating protein 2
mm9_v1_chrX_+_155970593_155970627	4.72541	CTCF.p2	AK044001|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene	NM_001033472|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene
mm9_v1_chr5_+_64551449_64551546	4.69331	CTCF.p2	AK080526|Tbc1d1|57915|TBC1 domain family, member 1	NM_019636|Tbc1d1|57915|TBC1 domain family, member 1	AK159256|Tbc1d1|57915|TBC1 domain family, member 1	U33005|Tbc1d1|57915|TBC1 domain family, member 1
mm9_v1_chr5_-_143667004_143667334	4.66617	CTCF.p2	AK218610|Actb|11461|actin, beta	AK206771|Actb|11461|actin, beta	AK208252|Actb|11461|actin, beta	AK202772|Actb|11461|actin, beta	M12481|Actb|11461|actin, beta	X03765|Actb|11461|actin, beta	EF095208|Actb|11461|actin, beta
mm9_v1_chr11_+_5688463_5688609	4.62762	CTCF.p2	NM_001146308|Dbnl|13169|drebrin-like	NM_001146309|Dbnl|13169|drebrin-like	NM_013810|Dbnl|13169|drebrin-like	AK053796|Dbnl|13169|drebrin-like	AK046073|Dbnl|13169|drebrin-like	AK151096|Dbnl|13169|drebrin-like	AK152204|Dbnl|13169|drebrin-like	AK153072|Dbnl|13169|drebrin-like	AK161973|Dbnl|13169|drebrin-like	AK159984|Dbnl|13169|drebrin-like	AK168898|Dbnl|13169|drebrin-like	AK134136|Dbnl|13169|drebrin-like	AK134487|Dbnl|13169|drebrin-like	AK140752|Dbnl|13169|drebrin-like	AK146920|Dbnl|13169|drebrin-like	AK152110|Dbnl|13169|drebrin-like	BC046430|Dbnl|13169|drebrin-like	AK078082|Dbnl|13169|drebrin-like	AK172471|Dbnl|13169|drebrin-like	U58884|Dbnl|13169|drebrin-like	AK153389|Dbnl|13169|drebrin-like	AK142818|Dbnl|13169|drebrin-like	AK167956|Dbnl|13169|drebrin-like	AY098595|Dbnl|13169|drebrin-like	AK199448|Dbnl|13169|drebrin-like	AK203166|Dbnl|13169|drebrin-like
mm9_v1_chr12_+_8320219_8320268	4.6256	CTCF.p2	AK040654|Hs1bp3|58240|HCLS1 binding protein 3	NM_021429|Hs1bp3|58240|HCLS1 binding protein 3	AK154696|Hs1bp3|58240|HCLS1 binding protein 3	AK084802|Hs1bp3|58240|HCLS1 binding protein 3	AK170838|Hs1bp3|58240|HCLS1 binding protein 3	BC095977|Hs1bp3|58240|HCLS1 binding protein 3	AJ132192|Hs1bp3|58240|HCLS1 binding protein 3
mm9_v1_chr5_-_137943329_137943368	4.6057	CTCF.p2	AK158620|Pop7|74097|processing of precursor 7, ribonuclease P family, (S. cerevisiae)
mm9_v1_chr5_+_115956809_115956836	4.60162	CTCF.p2	AK206113|Pxn|19303|paxillin	AK214527|Pxn|19303|paxillin
mm9_v1_chr1_+_155596555_155596633	4.59221	CTCF.p2	AK140815|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	NM_011882|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	BC003873|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
mm9_v1_chr7_+_16894925_16895103	4.57717	CTCF.p2	NM_133234|Bbc3|170770|BCL2 binding component 3	BC044782|Bbc3|170770|BCL2 binding component 3	AF332560|Bbc3|170770|BCL2 binding component 3	BC060370|Bbc3|170770|BCL2 binding component 3	BC147261|Bbc3|170770|BCL2 binding component 3	BC147262|Bbc3|170770|BCL2 binding component 3
mm9_v1_chr6_+_108733075_108733279	4.56726	CTCF.p2	AK152798|Arl8b|67166|ADP-ribosylation factor-like 8B	AK144177|Arl8b|67166|ADP-ribosylation factor-like 8B	AK076292|Arl8b|67166|ADP-ribosylation factor-like 8B	AK146307|Arl8b|67166|ADP-ribosylation factor-like 8B	AK159348|Arl8b|67166|ADP-ribosylation factor-like 8B	AK170645|Arl8b|67166|ADP-ribosylation factor-like 8B	AK012024|Arl8b|67166|ADP-ribosylation factor-like 8B	AK075941|Arl8b|67166|ADP-ribosylation factor-like 8B	AK151036|Arl8b|67166|ADP-ribosylation factor-like 8B	AK149822|Arl8b|67166|ADP-ribosylation factor-like 8B	BC013719|Arl8b|67166|ADP-ribosylation factor-like 8B	AK009279|Arl8b|67166|ADP-ribosylation factor-like 8B	AK169929|Arl8b|67166|ADP-ribosylation factor-like 8B	AK005999|Arl8b|67166|ADP-ribosylation factor-like 8B	AK195129|Arl8b|67166|ADP-ribosylation factor-like 8B	AB185206|Arl8b|67166|ADP-ribosylation factor-like 8B	CT010337|Arl8b|67166|ADP-ribosylation factor-like 8B	AK203754|Arl8b|67166|ADP-ribosylation factor-like 8B
mm9_v1_chr6_-_3349415_3349463	4.54908	CTCF.p2	AK172649|Samd9l|209086|sterile alpha motif domain containing 9-like
mm9_v1_chr19_-_6141100_6141219	4.5297	CTCF.p2	AF143680|Arl2|56327|ADP-ribosylation factor-like 2	BC052938|Arl2|56327|ADP-ribosylation factor-like 2	BC060259|Arl2|56327|ADP-ribosylation factor-like 2	AK011366|Arl2|56327|ADP-ribosylation factor-like 2	NM_019722|Arl2|56327|ADP-ribosylation factor-like 2	BC080803|Arl2|56327|ADP-ribosylation factor-like 2
mm9_v1_chr10_+_24589791_24589858	4.52679	CTCF.p2	NM_001166416|Med23|70208|mediator complex subunit 23	NM_027347|Med23|70208|mediator complex subunit 23	AK028545|Med23|70208|mediator complex subunit 23	AK042346|Med23|70208|mediator complex subunit 23	AF507918|Med23|70208|mediator complex subunit 23	BC050916|Med23|70208|mediator complex subunit 23	BC040398|Med23|70208|mediator complex subunit 23	AK129312|Med23|70208|mediator complex subunit 23
mm9_v1_chr17_-_34027488_34027531	4.43757	CTCF.p2	BC003753|Kifc1|100042970|kinesin family member C1	D49544|Kifc1|100042970|kinesin family member C1	BC057162|Kifc1|100042970|kinesin family member C1	BC100328|Kifc1|100042970|kinesin family member C1
mm9_v1_chr2_+_151319915_151320083	4.42618	CTCF.p2	AK039136|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	AK137088|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	AK013024|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	BC050936|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	NM_198326|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	BC106101|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	AK181317|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)
mm9_v1_chr14_+_56223363_56223415	4.41994	CTCF.p2	BC012968|Irf9|16391|interferon regulatory factor 9	NM_001159418|Irf9|16391|interferon regulatory factor 9
mm9_v1_chr8_-_20020246_20020303	4.40839	CTCF.p2	BC086761|2610005L07Rik|381598|cadherin 11 pseudogene	BC086760|2610005L07Rik|381598|cadherin 11 pseudogene	AK134636|2610005L07Rik|381598|cadherin 11 pseudogene	AK135487|6820431F20Rik|547150|cadherin 11 pseudogene	BC064022|2610005L07Rik|381598|cadherin 11 pseudogene	AK011323|2610005L07Rik|381598|cadherin 11 pseudogene	AK017816|2610005L07Rik|381598|cadherin 11 pseudogene	AK081322|2610005L07Rik|381598|cadherin 11 pseudogene	AK012880|2610005L07Rik|381598|cadherin 11 pseudogene	AK167066|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK166663|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene
mm9_v1_chr6_+_108733041_108733073	4.40752	CTCF.p2	NM_026011|Arl8b|67166|ADP-ribosylation factor-like 8B	AK030689|Arl8b|67166|ADP-ribosylation factor-like 8B
mm9_v1_chr10_-_126467848_126467902	4.39861	CTCF.p2	BC034286|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK020437|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK169164|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK018591|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK141183|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK012240|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK171656|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK172112|Tsfm|66399|Ts translation elongation factor, mitochondrial	BC057904|Tsfm|66399|Ts translation elongation factor, mitochondrial	NM_025537|Tsfm|66399|Ts translation elongation factor, mitochondrial
mm9_v1_chr11_-_76391228_76391228	4.37848	CTCF.p2	NM_198894|Abr|109934|active BCR-related gene
mm9_v1_chr5_+_116009516_116009532	4.36865	CTCF.p2	AK012606|Rplp0|11837|ribosomal protein, large, P0	AK029816|Rplp0|11837|ribosomal protein, large, P0	AK161683|Rplp0|11837|ribosomal protein, large, P0	BC087887|Rplp0|11837|ribosomal protein, large, P0	BC089496|Rplp0|11837|ribosomal protein, large, P0	AK081678|Rplp0|11837|ribosomal protein, large, P0	AK002315|Rplp0|11837|ribosomal protein, large, P0	AK009767|Rplp0|11837|ribosomal protein, large, P0	AK010267|Rplp0|11837|ribosomal protein, large, P0	AK150448|Rplp0|11837|ribosomal protein, large, P0	AK159358|Rplp0|11837|ribosomal protein, large, P0	AK160541|Rplp0|11837|ribosomal protein, large, P0	AK166728|Rplp0|11837|ribosomal protein, large, P0	X15267|Rplp0|11837|ribosomal protein, large, P0	AK167240|Rplp0|11837|ribosomal protein, large, P0	BC003833|Rplp0|11837|ribosomal protein, large, P0
mm9_v1_chr12_+_101202708_101202902	4.36323	CTCF.p2	NM_001164426|Kcnk13|217826|potassium channel, subfamily K, member 13	NM_001164427|Kcnk13|217826|potassium channel, subfamily K, member 13	NM_146037|Kcnk13|217826|potassium channel, subfamily K, member 13	AK158645|Kcnk13|217826|potassium channel, subfamily K, member 13	AK155396|Kcnk13|217826|potassium channel, subfamily K, member 13	AK089394|Kcnk13|217826|potassium channel, subfamily K, member 13	AK134730|Kcnk13|217826|potassium channel, subfamily K, member 13	AK170504|Kcnk13|217826|potassium channel, subfamily K, member 13
mm9_v1_chr1_-_53841997_53842058	4.33747	CTCF.p2	AK029551|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK165291|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AY092028|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK153108|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	BC006579|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK035693|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK076932|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK083332|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	NM_133810|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)
mm9_v1_chr13_-_45097365_45097527	4.29857	CTCF.p2	BC058574|Dtnbp1|94245|dystrobrevin binding protein 1	BC018350|Dtnbp1|94245|dystrobrevin binding protein 1	AJ404859|Dtnbp1|94245|dystrobrevin binding protein 1	AK150306|Dtnbp1|94245|dystrobrevin binding protein 1	NM_025772|Dtnbp1|94245|dystrobrevin binding protein 1	BC048682|Dtnbp1|94245|dystrobrevin binding protein 1
mm9_v1_chr19_+_5878465_5878648	4.27781	CTCF.p2	NM_134154|Slc25a45|107375|solute carrier family 25, member 45	BC037680|Slc25a45|107375|solute carrier family 25, member 45	BC022156|Slc25a45|107375|solute carrier family 25, member 45
mm9_v1_chr14_-_22668093_22668141	4.25658	CTCF.p2	CT010388|Comtd1|69156|catechol-O-methyltransferase domain containing 1	BC019467|Comtd1|69156|catechol-O-methyltransferase domain containing 1	BC049670|Comtd1|69156|catechol-O-methyltransferase domain containing 1	AK007659|Comtd1|69156|catechol-O-methyltransferase domain containing 1	AK054334|Comtd1|69156|catechol-O-methyltransferase domain containing 1	NM_026965|Comtd1|69156|catechol-O-methyltransferase domain containing 1
mm9_v1_chr2_-_118199046_118199154	4.24735	CTCF.p2	BC052037|Gpr176|381413|G protein-coupled receptor 176	NM_201367|Gpr176|381413|G protein-coupled receptor 176
mm9_v1_chr1_-_87633103_87633180	4.24523	CTCF.p2	BC052931|A630001G21Rik|319997|RIKEN cDNA A630001G21 gene	AK041324|A630001G21Rik|319997|RIKEN cDNA A630001G21 gene	AK041675|A630001G21Rik|319997|RIKEN cDNA A630001G21 gene	NM_177055|A630001G21Rik|319997|RIKEN cDNA A630001G21 gene
mm9_v1_chr14_+_66915852_66915861	4.2438	CTCF.p2	NM_029979|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr5_+_115685856_115685859	4.19038	CTCF.p2	BC022670|Pop5|117109|processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	NM_026398|Pop5|117109|processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
mm9_v1_chr3_+_14641726_14641789	4.18527	CTCF.p2	AK162621|Car13|71934|carbonic anhydrase 13	NM_024495|Car13|71934|carbonic anhydrase 13	AK153080|Car13|71934|carbonic anhydrase 13	AK153353|Car13|71934|carbonic anhydrase 13	AK010166|Car13|71934|carbonic anhydrase 13	AK150871|Car13|71934|carbonic anhydrase 13	AK150897|Car13|71934|carbonic anhydrase 13	AK151978|Car13|71934|carbonic anhydrase 13	BC064050|Car13|71934|carbonic anhydrase 13	AF231123|Car13|71934|carbonic anhydrase 13	AK152124|Car13|71934|carbonic anhydrase 13	AK153258|Car13|71934|carbonic anhydrase 13	AK151519|Car13|71934|carbonic anhydrase 13
mm9_v1_chr17_+_35068258_35068328	4.1799	CTCF.p2	AK077444|Neu1|18010|neuraminidase 1	AK145680|Neu1|18010|neuraminidase 1	Y11412|Neu1|18010|neuraminidase 1	U93702|Neu1|18010|neuraminidase 1	BC004666|Neu1|18010|neuraminidase 1
mm9_v1_chr15_-_98568883_98568907	4.17558	CTCF.p2	
mm9_v1_chr1_+_82836029_82836087	4.14733	CTCF.p2	AK048326|Agfg1|15463|ArfGAP with FG repeats 1	NM_010472|Agfg1|15463|ArfGAP with FG repeats 1	AK049400|Agfg1|15463|ArfGAP with FG repeats 1	BC031154|Agfg1|15463|ArfGAP with FG repeats 1
mm9_v1_chr16_+_16303044_16303113	4.12358	CTCF.p2	AK083653|Yars2|70120|tyrosyl-tRNA synthetase 2 (mitochondrial)	AK008774|Yars2|70120|tyrosyl-tRNA synthetase 2 (mitochondrial)	AK138504|Yars2|70120|tyrosyl-tRNA synthetase 2 (mitochondrial)	BC060295|Yars2|70120|tyrosyl-tRNA synthetase 2 (mitochondrial)	NM_198246|Yars2|70120|tyrosyl-tRNA synthetase 2 (mitochondrial)
mm9_v1_chr7_-_52391756_52391816	4.10977	CTCF.p2	BC019801|Flt3l|14256|FMS-like tyrosine kinase 3 ligand	AK020105|Flt3l|14256|FMS-like tyrosine kinase 3 ligand	NM_013520|Flt3l|14256|FMS-like tyrosine kinase 3 ligand
mm9_v1_chr8_+_23303277_23303337	4.10499	CTCF.p2	AK161865|Vps36|70160|vacuolar protein sorting 36 (yeast)	AK008946|Vps36|70160|vacuolar protein sorting 36 (yeast)	AK150754|Vps36|70160|vacuolar protein sorting 36 (yeast)	AK151035|Vps36|70160|vacuolar protein sorting 36 (yeast)	AK156241|Vps36|70160|vacuolar protein sorting 36 (yeast)	BC010811|Vps36|70160|vacuolar protein sorting 36 (yeast)	NM_027338|Vps36|70160|vacuolar protein sorting 36 (yeast)
mm9_v1_chr2_+_170321927_170322026	4.0575	CTCF.p2	BC065407|Pfdn4|109054|prefoldin 4	NM_001013369|Pfdn4|109054|prefoldin 4	BC147673|Pfdn4|109054|prefoldin 4	BC147674|Pfdn4|109054|prefoldin 4
mm9_v1_chr2_-_94278124_94278301	4.05568	CTCF.p2	AK192060|Api5|11800|apoptosis inhibitor 5	AK178132|Api5|11800|apoptosis inhibitor 5	AK079865|Api5|11800|apoptosis inhibitor 5	U35846|Api5|11800|apoptosis inhibitor 5	AK167315|Api5|11800|apoptosis inhibitor 5	AK153934|Api5|11800|apoptosis inhibitor 5	BC007133|Api5|11800|apoptosis inhibitor 5	AK160874|Api5|11800|apoptosis inhibitor 5	AK134480|Api5|11800|apoptosis inhibitor 5	AK163586|Api5|11800|apoptosis inhibitor 5	AK167375|Api5|11800|apoptosis inhibitor 5
mm9_v1_chr5_-_140212063_140212302	4.0233	CTCF.p2	AK220308|Micall2|231830|MICAL-like 2	AK165558|Micall2|231830|MICAL-like 2	AB182579|Micall2|231830|MICAL-like 2	AK044547|Micall2|231830|MICAL-like 2	AK085948|Micall2|231830|MICAL-like 2	AK164043|Micall2|231830|MICAL-like 2	AK151086|Micall2|231830|MICAL-like 2	NM_174850|Micall2|231830|MICAL-like 2
mm9_v1_chr10_-_117147757_117147818	3.96228	CTCF.p2	AK168690|Mdm2|17246|transformed mouse 3T3 cell double minute 2	BC092270|Mdm2|17246|transformed mouse 3T3 cell double minute 2	AK004719|Mdm2|17246|transformed mouse 3T3 cell double minute 2	NM_010786|Mdm2|17246|transformed mouse 3T3 cell double minute 2
mm9_v1_chr15_+_76175485_76175500	3.95575	CTCF.p2	
mm9_v1_chr8_-_72149443_72149460	3.95531	CTCF.p2	AK079745|Zfp868|234362|zinc finger protein 868	AK168306|Zfp868|234362|zinc finger protein 868	NM_172754|Zfp868|234362|zinc finger protein 868
mm9_v1_chr14_+_66915867_66915901	3.92697	CTCF.p2	BC145783|Trim35|66854|tripartite motif-containing 35	BC145809|Trim35|66854|tripartite motif-containing 35	AF145374|Trim35|66854|tripartite motif-containing 35	AK032635|Trim35|66854|tripartite motif-containing 35	AK075877|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr2_-_114000981_114001027	3.87417	CTCF.p2	AK138700|Aqr|11834|aquarius	AK082873|Aqr|11834|aquarius
mm9_v1_chr10_-_117147722_117147744	3.84477	CTCF.p2	X58876|Mdm2|17246|transformed mouse 3T3 cell double minute 2	BC050902|Mdm2|17246|transformed mouse 3T3 cell double minute 2	AK004881|Mdm2|17246|transformed mouse 3T3 cell double minute 2	AK088638|Mdm2|17246|transformed mouse 3T3 cell double minute 2
mm9_v1_chr7_+_134944106_134944154	3.82813	CTCF.p2	NM_001040684|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	NM_133943|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	AK077476|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm9_v1_chr1_+_120218417_120218424	3.78927	CTCF.p2	NM_026472|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AK077770|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein
mm9_v1_chr11_+_83286587_83286623	3.78103	CTCF.p2	AK011843|Taf15|70439|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK078205|Taf15|70439|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK051568|Taf15|70439|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_027427|Taf15|70439|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK166550|Taf15|70439|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr16_-_20425991_20426058	3.77852	CTCF.p2	AK050565|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm9_v1_chr2_+_28368603_28368686	3.73027	CTCF.p2	NM_001145834|Ralgds|19730|ral guanine nucleotide dissociation stimulator	NM_009058|Ralgds|19730|ral guanine nucleotide dissociation stimulator
mm9_v1_chr15_+_97794629_97794751	3.72704	CTCF.p2	AK134684|Tmem106c|380967|transmembrane protein 106C	BC046621|Tmem106c|380967|transmembrane protein 106C	NM_201359|Tmem106c|380967|transmembrane protein 106C
mm9_v1_chr11_+_67466129_67466154	3.72662	CTCF.p2	AK172943|Gas7|14457|growth arrest specific 7
mm9_v1_chr11_+_67346499_67346579	3.72536	CTCF.p2	NM_008088|Gas7|14457|growth arrest specific 7	BC120528|Gas7|14457|growth arrest specific 7	BC120530|Gas7|14457|growth arrest specific 7
mm9_v1_chr19_+_46130978_46131205	3.72237	CTCF.p2	NM_001081214|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	AK147947|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	AK044522|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	AK122322|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	BC066048|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	AK180476|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1
mm9_v1_chr11_+_78141923_78141987	3.71771	CTCF.p2	BC058979|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	NM_201406|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK166408|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK033331|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK043232|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK053771|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK039604|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK045759|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK142871|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK158128|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK169633|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK153300|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK151858|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK152229|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S
mm9_v1_chr5_-_5749270_5749396	3.71604	CTCF.p2	AK144312|Steap1|70358|six transmembrane epithelial antigen of the prostate 1	AY029584|Steap1|70358|six transmembrane epithelial antigen of the prostate 1	BC061023|Steap1|70358|six transmembrane epithelial antigen of the prostate 1	AK010437|Steap1|70358|six transmembrane epithelial antigen of the prostate 1	NM_027399|Steap1|70358|six transmembrane epithelial antigen of the prostate 1
mm9_v1_chr7_-_52391649_52391688	3.71346	CTCF.p2	U04807|Flt3l|14256|FMS-like tyrosine kinase 3 ligand
mm9_v1_chr11_+_88835235_88835270	3.70402	CTCF.p2	NM_016706|Coil|12812|coilin	AK146366|Coil|12812|coilin	AF208663|Coil|12812|coilin
mm9_v1_chr8_-_27104573_27104612	3.67745	CTCF.p2	BC027296|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK015374|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK032677|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK043620|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK170994|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	NM_029037|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK160873|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK036348|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK138952|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene
mm9_v1_chr1_+_120218430_120218469	3.66051	CTCF.p2	AK019209|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	BC058559|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AK011340|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AY030275|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AK009440|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AK081486|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AB056870|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein
mm9_v1_chr3_-_105490320_105490491	3.64177	CTCF.p2	AK050950|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	AF217000|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	AF217001|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	AJ250027|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	AK154518|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	BC125471|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	BC137721|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	NM_017397|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	AF220454|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
mm9_v1_chr8_-_72149357_72149431	3.64111	CTCF.p2	AK083009|Zfp868|234362|zinc finger protein 868
mm9_v1_chr13_-_114408704_114408818	3.62449	CTCF.p2	AK052343|Snx18|170625|sorting nexin 18	BC137801|Snx18|170625|sorting nexin 18	BC145951|Snx18|170625|sorting nexin 18	AF408408|Snx18|170625|sorting nexin 18	AK155955|Snx18|170625|sorting nexin 18	AK143645|Snx18|170625|sorting nexin 18	BC063089|Snx18|170625|sorting nexin 18	NM_130796|Snx18|170625|sorting nexin 18
mm9_v1_chr6_+_124881376_124881406	3.60517	CTCF.p2	AK171220|Mlf2|30853|myeloid leukemia factor 2	NM_001170341|Mlf2|30853|myeloid leukemia factor 2	NM_145385|Mlf2|30853|myeloid leukemia factor 2
mm9_v1_chr15_+_6336747_6336872	3.581	CTCF.p2	NM_001037905|Dab2|13132|disabled homolog 2 (Drosophila)	NM_001102400|Dab2|13132|disabled homolog 2 (Drosophila)	NM_023118|Dab2|13132|disabled homolog 2 (Drosophila)	AK154716|Dab2|13132|disabled homolog 2 (Drosophila)	AK162744|Dab2|13132|disabled homolog 2 (Drosophila)	AK162851|Dab2|13132|disabled homolog 2 (Drosophila)	AK168375|Dab2|13132|disabled homolog 2 (Drosophila)	U18869|Dab2|13132|disabled homolog 2 (Drosophila)	AK165810|Dab2|13132|disabled homolog 2 (Drosophila)
mm9_v1_chr5_-_67009992_67010044	3.56422	CTCF.p2	AK169959|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	AK153260|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2
mm9_v1_chr2_+_167363696_167363726	3.54578	CTCF.p2	AK144478|Snai1|20613|snail homolog 1 (Drosophila)	BC034857|Snai1|20613|snail homolog 1 (Drosophila)	NM_011427|Snai1|20613|snail homolog 1 (Drosophila)
mm9_v1_chr7_-_29941186_29941253	3.51942	CTCF.p2	BC058765|Fam98c|73833|family with sequence similarity 98, member C	AK166139|Fam98c|73833|family with sequence similarity 98, member C	AK003496|Fam98c|73833|family with sequence similarity 98, member C	AK138395|Fam98c|73833|family with sequence similarity 98, member C	AK171108|Fam98c|73833|family with sequence similarity 98, member C	AK080790|Fam98c|73833|family with sequence similarity 98, member C	NM_001146023|Fam98c|73833|family with sequence similarity 98, member C
mm9_v1_chr11_-_118254729_118254841	3.49894	CTCF.p2	AK200165|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein
mm9_v1_chr10_+_25079661_25079716	3.4987	CTCF.p2	AK170275|Epb4.1l2|13822|erythrocyte protein band 4.1-like 2	AK167434|Epb4.1l2|13822|erythrocyte protein band 4.1-like 2	BC023768|Epb4.1l2|13822|erythrocyte protein band 4.1-like 2	AK052475|Epb4.1l2|13822|erythrocyte protein band 4.1-like 2
mm9_v1_chr5_+_116009475_116009502	3.48177	CTCF.p2	NM_007475|Rplp0|11837|ribosomal protein, large, P0
mm9_v1_chr11_+_83286635_83286647	3.47228	CTCF.p2	BC137591|Taf15|70439|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK146331|Taf15|70439|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr7_-_29678773_29678890	3.46181	CTCF.p2	AK195007|Actn4|60595|actinin alpha 4
mm9_v1_chr5_-_114578184_114578256	3.45754	CTCF.p2	BC062188|Alkbh2|231642|alkB, alkylation repair homolog 2 (E. coli)	NM_175016|Alkbh2|231642|alkB, alkylation repair homolog 2 (E. coli)	AK079195|Alkbh2|231642|alkB, alkylation repair homolog 2 (E. coli)
mm9_v1_chr3_+_121948693_121948990	3.45523	CTCF.p2	U95053|Gclm|14630|glutamate-cysteine ligase, modifier subunit	CT010256|Gclm|14630|glutamate-cysteine ligase, modifier subunit	AK176933|Gclm|14630|glutamate-cysteine ligase, modifier subunit	AK184377|Gclm|14630|glutamate-cysteine ligase, modifier subunit
mm9_v1_chr14_+_66915914_66915996	3.43729	CTCF.p2	AK129288|Trim35|66854|tripartite motif-containing 35	AK163749|Trim35|66854|tripartite motif-containing 35	AB060155|Trim35|66854|tripartite motif-containing 35	AK179232|Trim35|66854|tripartite motif-containing 35	BC053494|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr1_-_181448145_181448150	3.41042	CTCF.p2	AK167875|Smyd3|69726|SET and MYND domain containing 3	AK163057|Smyd3|69726|SET and MYND domain containing 3
mm9_v1_chr19_-_38893670_38893728	3.40642	CTCF.p2	AK134051|Noc3l|57753|nucleolar complex associated 3 homolog (S. cerevisiae)	AB077991|Noc3l|57753|nucleolar complex associated 3 homolog (S. cerevisiae)	BC031132|Noc3l|57753|nucleolar complex associated 3 homolog (S. cerevisiae)	AK168944|Noc3l|57753|nucleolar complex associated 3 homolog (S. cerevisiae)	NM_021315|Noc3l|57753|nucleolar complex associated 3 homolog (S. cerevisiae)
mm9_v1_chr8_+_73895190_73895211	3.38594	CTCF.p2	AK163762|Ocel1|77090|occludin/ELL domain containing 1	NM_029865|Ocel1|77090|occludin/ELL domain containing 1
mm9_v1_chr4_+_151413427_151413471	3.3725	CTCF.p2	AK047599|Nol9|74035|nucleolar protein 9	AK164493|Nol9|74035|nucleolar protein 9	NM_001159599|Nol9|74035|nucleolar protein 9	NM_028727|Nol9|74035|nucleolar protein 9	BC024877|Nol9|74035|nucleolar protein 9	AK172043|Nol9|74035|nucleolar protein 9	AK014568|Nol9|74035|nucleolar protein 9	AK050948|Nol9|74035|nucleolar protein 9	AK157956|Nol9|74035|nucleolar protein 9	BC125432|Nol9|74035|nucleolar protein 9	BC132099|Nol9|74035|nucleolar protein 9	AK157398|Nol9|74035|nucleolar protein 9	AK079935|Nol9|74035|nucleolar protein 9	AK046761|Nol9|74035|nucleolar protein 9	BC096599|Nol9|74035|nucleolar protein 9	AK042581|Nol9|74035|nucleolar protein 9	BC051109|Nol9|74035|nucleolar protein 9
mm9_v1_chr10_-_14425271_14425365	3.36572	CTCF.p2	AK009227|Vta1|66201|Vps20-associated 1 homolog (S. cerevisiae)	BC026752|Vta1|66201|Vps20-associated 1 homolog (S. cerevisiae)	AK002611|Vta1|66201|Vps20-associated 1 homolog (S. cerevisiae)	NM_025418|Vta1|66201|Vps20-associated 1 homolog (S. cerevisiae)	AK003213|Vta1|66201|Vps20-associated 1 homolog (S. cerevisiae)	AK004323|Vta1|66201|Vps20-associated 1 homolog (S. cerevisiae)
mm9_v1_chr19_+_46150521_46150534	3.36239	CTCF.p2	AK129040|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1
mm9_v1_chr17_+_34272535_34272615	3.34049	CTCF.p2	AK160460|H2-DMa|14998|histocompatibility 2, class II, locus DMa	BC001996|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X62742|H2-DMa|14998|histocompatibility 2, class II, locus DMa	AK169900|H2-DMa|14998|histocompatibility 2, class II, locus DMa	BC049992|H2-DMa|14998|histocompatibility 2, class II, locus DMa	NM_010386|H2-DMa|14998|histocompatibility 2, class II, locus DMa	U35324|H2-DMa|14998|histocompatibility 2, class II, locus DMa	U35325|H2-DMa|14998|histocompatibility 2, class II, locus DMa	U35326|H2-DMa|14998|histocompatibility 2, class II, locus DMa	U35327|H2-DMa|14998|histocompatibility 2, class II, locus DMa	U35328|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90783|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90784|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90785|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90786|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90787|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90788|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90789|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90790|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90791|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90792|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90793|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90794|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90795|H2-DMa|14998|histocompatibility 2, class II, locus DMa	X90963|H2-DMa|14998|histocompatibility 2, class II, locus DMa
mm9_v1_chr8_+_73895369_73895482	3.32899	CTCF.p2	AK020528|Ocel1|77090|occludin/ELL domain containing 1
mm9_v1_chr2_+_167363769_167363826	3.32129	CTCF.p2	X67253|Snai1|20613|snail homolog 1 (Drosophila)	M95604|Snai1|20613|snail homolog 1 (Drosophila)	CT010204|Snai1|20613|snail homolog 1 (Drosophila)	CT010370|Snai1|20613|snail homolog 1 (Drosophila)
mm9_v1_chr3_+_90024674_90024714	3.31964	CTCF.p2	BC027214|Rab13|68328|RAB13, member RAS oncogene family
mm9_v1_chr8_+_72806863_72806966	3.30403	CTCF.p2	NM_001146153|Homer3|26558|homer homolog 3 (Drosophila)	NM_011984|Homer3|26558|homer homolog 3 (Drosophila)	AK155463|Homer3|26558|homer homolog 3 (Drosophila)	BC095961|Homer3|26558|homer homolog 3 (Drosophila)	BC005773|Homer3|26558|homer homolog 3 (Drosophila)
mm9_v1_chr1_-_123464468_123464558	3.2662	CTCF.p2	AK075864|Ddx18|66942|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	BC017160|Ddx18|66942|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	AK019845|Ddx18|66942|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	BC103776|Ddx18|66942|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	BC141230|Ddx18|66942|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	BC141231|Ddx18|66942|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	AK012878|Ddx18|66942|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	BC028246|Ddx18|66942|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	AK012706|Ddx18|66942|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	NM_025860|Ddx18|66942|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
mm9_v1_chr10_+_79132113_79132186	3.2343	CTCF.p2	BC138515|Gm16517|110012|predicted gene, Gm16517	BC138516|Gm16517|110012|predicted gene, Gm16517	AF303106|Gm16517|110012|predicted gene, Gm16517	NM_148934|Gm16517|110012|predicted gene, Gm16517
mm9_v1_chr14_+_8912826_8912868	3.2299	CTCF.p2	NM_025938|Rpp14|67053|ribonuclease P 14 subunit (human)
mm9_v1_chr1_+_44176812_44176851	3.21664	CTCF.p2	AK047404|Bivm|246229|basic, immunoglobulin-like variable motif containing	NM_144558|Bivm|246229|basic, immunoglobulin-like variable motif containing	AK032375|Bivm|246229|basic, immunoglobulin-like variable motif containing	AK034329|Bivm|246229|basic, immunoglobulin-like variable motif containing
mm9_v1_chr19_+_46150352_46150506	3.20193	CTCF.p2	NM_001039351|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	NM_001039352|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	NM_001039353|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	NM_053086|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	AK166753|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	AK014336|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	AK034817|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	AK147118|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	AK029150|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	AK150332|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	AK151031|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	AK152941|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1	BC003244|Nolc1|70769|nucleolar and coiled-body phosphoprotein 1
mm9_v1_chr19_+_5877812_5877838	3.19484	CTCF.p2	AK133879|Slc25a45|107375|solute carrier family 25, member 45	AK155754|Slc25a45|107375|solute carrier family 25, member 45	AK169876|Slc25a45|107375|solute carrier family 25, member 45	AK170869|Slc25a45|107375|solute carrier family 25, member 45
mm9_v1_chr11_+_101594269_101594313	3.18733	CTCF.p2	AK153829|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8	NM_144831|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8	BC132445|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8	AK220485|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8
mm9_v1_chr14_+_57506630_57506655	3.18657	CTCF.p2	NM_029498|Zmym2|76007|zinc finger, MYM-type 2	BC141403|Zmym2|76007|zinc finger, MYM-type 2
mm9_v1_chr3_-_154260022_154260061	3.1695	CTCF.p2	BC087879|Tyw3|209584|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	BC086686|Tyw3|209584|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	BC141040|Tyw3|209584|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	AK034820|Tyw3|209584|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	AK030344|Tyw3|209584|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	NM_001168358|Tyw3|209584|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	NM_172474|Tyw3|209584|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)
mm9_v1_chr11_-_115353104_115353170	3.16556	CTCF.p2	AF078840|Nt5c|50773|5',3'-nucleotidase, cytosolic	NM_015807|Nt5c|50773|5',3'-nucleotidase, cytosolic	BC024368|Nt5c|50773|5',3'-nucleotidase, cytosolic	AK007418|Nt5c|50773|5',3'-nucleotidase, cytosolic
mm9_v1_chr3_+_90024723_90024820	3.16305	CTCF.p2	AK002303|Rab13|68328|RAB13, member RAS oncogene family	NM_026677|Rab13|68328|RAB13, member RAS oncogene family	AB232608|Rab13|68328|RAB13, member RAS oncogene family
mm9_v1_chr4_+_86221626_86221649	3.13744	CTCF.p2	AK144591|Rraga|68441|Ras-related GTP binding A
mm9_v1_chr6_+_83028337_83028383	3.1338	CTCF.p2	BC028560|Pcgf1|69837|polycomb group ring finger 1	NM_197992|Pcgf1|69837|polycomb group ring finger 1
mm9_v1_chr2_+_103809709_103809717	3.12724	CTCF.p2	NM_001142336|Lmo2|16909|LIM domain only 2
mm9_v1_chr7_+_134944168_134944205	3.12543	CTCF.p2	BC006822|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	BC018525|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	BC132605|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	BC138589|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	AF277718|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm9_v1_chr4_+_86221615_86221621	3.10162	CTCF.p2	BC037615|Rraga|68441|Ras-related GTP binding A
mm9_v1_chr13_-_58228079_58228222	3.06984	CTCF.p2	AK004260|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr5_+_76569257_76569352	3.06397	CTCF.p2	AK075635|Srd5a3|57357|steroid 5 alpha-reductase 3	AK139290|Srd5a3|57357|steroid 5 alpha-reductase 3	BC145647|Srd5a3|57357|steroid 5 alpha-reductase 3	NM_020611|Srd5a3|57357|steroid 5 alpha-reductase 3	AK138681|Srd5a3|57357|steroid 5 alpha-reductase 3	BC014771|Srd5a3|57357|steroid 5 alpha-reductase 3	AK040198|Srd5a3|57357|steroid 5 alpha-reductase 3	AK162527|Srd5a3|57357|steroid 5 alpha-reductase 3	BC039564|Srd5a3|57357|steroid 5 alpha-reductase 3
mm9_v1_chr18_+_42671163_42671217	3.06057	CTCF.p2	AK076993|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK168434|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AB023485|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC040284|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC039185|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC016542|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr9_-_44042043_44042131	3.05363	CTCF.p2	BC125285|Cbl|12402|Casitas B-lineage lymphoma	X57111|Cbl|12402|Casitas B-lineage lymphoma	AK153915|Cbl|12402|Casitas B-lineage lymphoma	AK163907|Cbl|12402|Casitas B-lineage lymphoma	NM_007619|Cbl|12402|Casitas B-lineage lymphoma	AK029826|Cbl|12402|Casitas B-lineage lymphoma
mm9_v1_chr8_-_123112925_123112969	3.03311	CTCF.p2	AK028375|Gins2|272551|GINS complex subunit 2 (Psf2 homolog)
mm9_v1_chr7_+_54106270_54106390	3.01786	CTCF.p2	AK209400|Ldha|16828|lactate dehydrogenase A	AK146980|Ldha|16828|lactate dehydrogenase A	AK177468|Ldha|16828|lactate dehydrogenase A	AK194735|Ldha|16828|lactate dehydrogenase A	AK188760|Ldha|16828|lactate dehydrogenase A	AK200149|Ldha|16828|lactate dehydrogenase A
mm9_v1_chr19_+_5568016_5568024	3.00811	CTCF.p2	AK171710|Gm962|381201|predicted gene 962
mm9_v1_chr1_-_53409415_53409595	3.00255	CTCF.p2	BC013617|Asnsd1|70396|asparagine synthetase domain containing 1	AK207754|Asnsd1|70396|asparagine synthetase domain containing 1	AK214374|Asnsd1|70396|asparagine synthetase domain containing 1	AK209578|Asnsd1|70396|asparagine synthetase domain containing 1	AK076793|Asnsd1|70396|asparagine synthetase domain containing 1	AK008875|Asnsd1|70396|asparagine synthetase domain containing 1	AK034746|Asnsd1|70396|asparagine synthetase domain containing 1	AK154984|Asnsd1|70396|asparagine synthetase domain containing 1	AK170510|Asnsd1|70396|asparagine synthetase domain containing 1	AK050045|Asnsd1|70396|asparagine synthetase domain containing 1	AK155030|Asnsd1|70396|asparagine synthetase domain containing 1	AK168103|Asnsd1|70396|asparagine synthetase domain containing 1	AK049194|Asnsd1|70396|asparagine synthetase domain containing 1	NM_133728|Asnsd1|70396|asparagine synthetase domain containing 1	AK031295|Asnsd1|70396|asparagine synthetase domain containing 1	AK168534|Asnsd1|70396|asparagine synthetase domain containing 1
mm9_v1_chr14_+_48092235_48092236	3.00222	CTCF.p2	AK020018|Fbxo34|78938|F-box protein 34	NM_001146085|Fbxo34|78938|F-box protein 34	NM_001146086|Fbxo34|78938|F-box protein 34	NM_030236|Fbxo34|78938|F-box protein 34
mm9_v1_chr2_+_174123359_174123359	2.99439	CTCF.p2	AY519501|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AY519502|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AY519503|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AY519504|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_001077507|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_010309|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_201617|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_201618|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr10_+_79167197_79167254	2.98618	CTCF.p2	AY089967|Bsg|12215|basigin	AK002332|Bsg|12215|basigin	AK011364|Bsg|12215|basigin	AK147225|Bsg|12215|basigin	D00611|Bsg|12215|basigin	S63813|Bsg|12215|basigin	Y16256|Bsg|12215|basigin
mm9_v1_chr8_-_123112974_123112989	2.98617	CTCF.p2	BC082565|Gins2|272551|GINS complex subunit 2 (Psf2 homolog)	NM_178856|Gins2|272551|GINS complex subunit 2 (Psf2 homolog)	AK014776|Gins2|272551|GINS complex subunit 2 (Psf2 homolog)	AK030758|Gins2|272551|GINS complex subunit 2 (Psf2 homolog)
mm9_v1_chr1_-_181448151_181448176	2.97767	CTCF.p2	AK010447|Smyd3|69726|SET and MYND domain containing 3
mm9_v1_chr5_+_115956682_115956792	2.96169	CTCF.p2	AK171226|Pxn|19303|paxillin	AK148060|Pxn|19303|paxillin	NM_011223|Pxn|19303|paxillin	NM_133915|Pxn|19303|paxillin	AK149933|Pxn|19303|paxillin	AK171436|Pxn|19303|paxillin	BC025493|Pxn|19303|paxillin	AK167299|Pxn|19303|paxillin	AF293882|Pxn|19303|paxillin
mm9_v1_chr18_+_74375754_74375784	2.95736	CTCF.p2	AK017941|Cxxc1|74322|CXXC finger 1 (PHD domain)	AK146688|Cxxc1|74322|CXXC finger 1 (PHD domain)
mm9_v1_chr11_+_114529837_114529938	2.94928	CTCF.p2	AB037665|Rpl38|67671|ribosomal protein L38	NM_001048057|Rpl38|67671|ribosomal protein L38	NM_023372|Rpl38|67671|ribosomal protein L38	AK002659|Rpl38|67671|ribosomal protein L38	AK010518|Rpl38|67671|ribosomal protein L38	AK012391|Rpl38|67671|ribosomal protein L38	BC055346|Rpl38|67671|ribosomal protein L38	BC034339|Rpl38|67671|ribosomal protein L38	AK010277|Rpl38|67671|ribosomal protein L38	AK151517|Rpl38|67671|ribosomal protein L38	BC047046|Rpl38|67671|ribosomal protein L38
mm9_v1_chr19_+_4962305_4962355	2.93168	CTCF.p2	NM_025553|Mrpl11|66419|mitochondrial ribosomal protein L11	AK010329|Mrpl11|66419|mitochondrial ribosomal protein L11	AB049639|Mrpl11|66419|mitochondrial ribosomal protein L11	AK167247|Mrpl11|66419|mitochondrial ribosomal protein L11	AK002797|Mrpl11|66419|mitochondrial ribosomal protein L11	BC046750|Mrpl11|66419|mitochondrial ribosomal protein L11
mm9_v1_chr18_+_42671147_42671160	2.90875	CTCF.p2	AK150312|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK013830|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK010571|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr2_-_26264646_26264671	2.90836	CTCF.p2	AK085439|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AK170174|Inpp5e|64436|inositol polyphosphate-5-phosphatase E
mm9_v1_chr18_-_9449954_9450034	2.90012	CTCF.p2	BC035524|Ccny|67974|cyclin Y	AK017493|Ccny|67974|cyclin Y	AK006341|Ccny|67974|cyclin Y
mm9_v1_chr18_-_36675458_36675463	2.89992	CTCF.p2	AK164309|Hbegf|15200|heparin-binding EGF-like growth factor	NM_010415|Hbegf|15200|heparin-binding EGF-like growth factor
mm9_v1_chr2_-_121890678_121890752	2.88919	CTCF.p2	BC019404|Spg11|214585|spastic paraplegia 11
mm9_v1_chr17_-_27165478_27165573	2.88073	CTCF.p2	AK089220|Bak1|12018|BCL2-antagonist/killer 1	BC057589|Bak1|12018|BCL2-antagonist/killer 1	NM_007523|Bak1|12018|BCL2-antagonist/killer 1	Y13231|Bak1|12018|BCL2-antagonist/killer 1
mm9_v1_chr12_-_86682028_86682042	2.86318	CTCF.p2	
mm9_v1_chr9_+_100543993_100544033	2.85836	CTCF.p2	Z75332|Stag1|20842|stromal antigen 1	AK134316|Stag1|20842|stromal antigen 1
mm9_v1_chr2_-_114001033_114001080	2.84602	CTCF.p2	AK151716|Aqr|11834|aquarius	BC042479|Aqr|11834|aquarius	AK145547|Aqr|11834|aquarius	AK077886|Aqr|11834|aquarius	AK122310|Aqr|11834|aquarius	AK016322|Aqr|11834|aquarius	AK020468|Aqr|11834|aquarius	NM_009702|Aqr|11834|aquarius
mm9_v1_chr16_-_17911283_17911450	2.84506	CTCF.p2	AK088520|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK142684|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK148404|Dgcr14|27886|DiGeorge syndrome critical region gene 14	BC013711|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AF037256|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_001081633|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_022408|Dgcr14|27886|DiGeorge syndrome critical region gene 14
mm9_v1_chr1_+_152239986_152240102	2.83216	CTCF.p2	BC141406|Tpr|108989|translocated promoter region	BC141410|Tpr|108989|translocated promoter region
mm9_v1_chr1_-_145549903_145549945	2.83072	CTCF.p2	BC027756|Cdc73|214498|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK080861|Cdc73|214498|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr2_-_26495749_26495770	2.82929	CTCF.p2	BC046478|Snhg7|72091|small nucleolar RNA host gene (non-protein coding) 7	AK011283|Snhg7|72091|small nucleolar RNA host gene (non-protein coding) 7	AK028166|Snhg7|72091|small nucleolar RNA host gene (non-protein coding) 7
mm9_v1_chr2_-_30823346_30823454	2.82617	CTCF.p2	AK082936|Tor1a|30931|torsin family 1, member A (torsin A)	AK079728|Tor1a|30931|torsin family 1, member A (torsin A)	AJ298841|Tor1a|30931|torsin family 1, member A (torsin A)	AK038891|Tor1a|30931|torsin family 1, member A (torsin A)	AK160361|Tor1a|30931|torsin family 1, member A (torsin A)	BC017683|Tor1a|30931|torsin family 1, member A (torsin A)	NM_144884|Tor1a|30931|torsin family 1, member A (torsin A)
mm9_v1_chr18_+_74375861_74375888	2.81887	CTCF.p2	AK083655|Cxxc1|74322|CXXC finger 1 (PHD domain)	NM_028868|Cxxc1|74322|CXXC finger 1 (PHD domain)	AK010337|Cxxc1|74322|CXXC finger 1 (PHD domain)	AY099096|Cxxc1|74322|CXXC finger 1 (PHD domain)
mm9_v1_chr2_+_3035692_3035956	2.81253	CTCF.p2	BC138175|Fam171a1|269233|family with sequence similarity 171, member A1	BC145171|Fam171a1|269233|family with sequence similarity 171, member A1	AK077831|Fam171a1|269233|family with sequence similarity 171, member A1
mm9_v1_chr5_-_134652558_134652645	2.80762	CTCF.p2	AK005040|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)	BC024714|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)	AF410456|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)	BC055335|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)	AK017733|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)	NM_033572|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)
mm9_v1_chr14_+_73909826_73909861	2.8005	CTCF.p2	AK145636|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)	AK078288|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)	AK010270|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)	AK010686|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)	BC024950|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)	NM_026119|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)
mm9_v1_chr19_+_60887452_60887529	2.79858	CTCF.p2	NM_001167829|Fam45a|67894|family with sequence similarity 45, member A	NM_026437|Fam45a|67894|family with sequence similarity 45, member A	AK004643|Fam45a|67894|family with sequence similarity 45, member A	AK168474|Fam45a|67894|family with sequence similarity 45, member A	AK171767|Fam45a|67894|family with sequence similarity 45, member A	AK145769|Fam45a|67894|family with sequence similarity 45, member A	AK007867|Fam45a|67894|family with sequence similarity 45, member A	BC013514|Fam45a|67894|family with sequence similarity 45, member A	AK202624|Fam45a|67894|family with sequence similarity 45, member A
mm9_v1_chr11_+_116532973_116533009	2.79107	CTCF.p2	AK007675|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene	AK013681|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene	AK037979|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene	BC055707|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene	AK088915|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene
mm9_v1_chr14_-_55725370_55725429	2.79052	CTCF.p2	AK052384|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit	BC080798|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit	BC108374|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit	AK151844|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit	AK147177|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit	NM_007455|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit
mm9_v1_chr12_+_34114475_34114519	2.7902	CTCF.p2	AK010829|Twistnb|28071|TWIST neighbor	NM_172253|Twistnb|28071|TWIST neighbor	AK016638|Twistnb|28071|TWIST neighbor	AK017016|Twistnb|28071|TWIST neighbor	AK153090|Twistnb|28071|TWIST neighbor	AK160682|Twistnb|28071|TWIST neighbor	BC139162|Twistnb|28071|TWIST neighbor	BC139163|Twistnb|28071|TWIST neighbor	AK017810|Twistnb|28071|TWIST neighbor	AK008677|Twistnb|28071|TWIST neighbor	BC082580|Twistnb|28071|TWIST neighbor
mm9_v1_chr8_+_73895221_73895251	2.76314	CTCF.p2	AK155219|Ocel1|77090|occludin/ELL domain containing 1	AK143433|Ocel1|77090|occludin/ELL domain containing 1	BC019407|Ocel1|77090|occludin/ELL domain containing 1
mm9_v1_chr12_-_103943059_103943209	2.75701	CTCF.p2	BC056464|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	AK038913|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	NM_172584|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase
mm9_v1_chrX_+_20240021_20240121	2.73237	CTCF.p2	AK081808|Uba1|22201|ubiquitin-like modifier activating enzyme 1	AK171667|Uba1|22201|ubiquitin-like modifier activating enzyme 1	BC058630|Uba1|22201|ubiquitin-like modifier activating enzyme 1	NM_001136085|Uba1|22201|ubiquitin-like modifier activating enzyme 1	AK143416|Uba1|22201|ubiquitin-like modifier activating enzyme 1
mm9_v1_chr14_+_66915903_66915912	2.73123	CTCF.p2	AK031803|Trim35|66854|tripartite motif-containing 35	BC049105|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr2_+_117075473_117075485	2.72938	CTCF.p2	AK019190|Fam98b|68215|family with sequence similarity 98, member B	AK019253|Fam98b|68215|family with sequence similarity 98, member B	AK039305|Fam98b|68215|family with sequence similarity 98, member B	NM_026620|Fam98b|68215|family with sequence similarity 98, member B	BC048087|Fam98b|68215|family with sequence similarity 98, member B
mm9_v1_chr11_+_101594342_101594372	2.72664	CTCF.p2	AK170616|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8
mm9_v1_chr15_+_100299408_100299504	2.72356	CTCF.p2	NM_134093|Letmd1|68614|LETM1 domain containing 1	AK158718|Letmd1|68614|LETM1 domain containing 1
mm9_v1_chr5_-_5380077_5380250	2.72195	CTCF.p2	AK129226|Cdk14|18647|cyclin-dependent kinase 14	AK016370|Cdk14|18647|cyclin-dependent kinase 14	AK051411|Cdk14|18647|cyclin-dependent kinase 14	AK083790|Cdk14|18647|cyclin-dependent kinase 14	AF033655|Cdk14|18647|cyclin-dependent kinase 14	AK051283|Cdk14|18647|cyclin-dependent kinase 14	AK045083|Cdk14|18647|cyclin-dependent kinase 14	NM_011074|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr10_+_126503214_126503242	2.69522	CTCF.p2	AK012202|Cdk4|12567|cyclin-dependent kinase 4
mm9_v1_chr11_-_82721859_82721896	2.69409	CTCF.p2	BC018399|Nle1|217011|notchless homolog 1 (Drosophila)	BC035421|Nle1|217011|notchless homolog 1 (Drosophila)	AK170853|Nle1|217011|notchless homolog 1 (Drosophila)	AK141230|Nle1|217011|notchless homolog 1 (Drosophila)	NM_145431|Nle1|217011|notchless homolog 1 (Drosophila)
mm9_v1_chr10_+_79167255_79167267	2.68735	CTCF.p2	BC010270|Bsg|12215|basigin
mm9_v1_chr11_+_67466072_67466088	2.68668	CTCF.p2	AF133184|Gas7|14457|growth arrest specific 7
mm9_v1_chr3_-_116210955_116211092	2.68161	CTCF.p2	AK167830|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK151108|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK151400|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK159961|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK002543|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	BC016519|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK009245|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	BC090403|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK152129|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	NM_025517|Rtcd1|66368|RNA terminal phosphate cyclase domain 1
mm9_v1_chr5_+_140807854_140807891	2.67544	CTCF.p2	AK168312|Nudt1|17766|nudix (nucleoside diphosphate linked moiety X)-type motif 1	D49956|Nudt1|17766|nudix (nucleoside diphosphate linked moiety X)-type motif 1	NM_008637|Nudt1|17766|nudix (nucleoside diphosphate linked moiety X)-type motif 1	BC021940|Nudt1|17766|nudix (nucleoside diphosphate linked moiety X)-type motif 1	AK088309|Nudt1|17766|nudix (nucleoside diphosphate linked moiety X)-type motif 1	AK011695|Nudt1|17766|nudix (nucleoside diphosphate linked moiety X)-type motif 1
mm9_v1_chr14_+_8912873_8912900	2.66076	CTCF.p2	AK012105|Rpp14|67053|ribonuclease P 14 subunit (human)	AK016631|Rpp14|67053|ribonuclease P 14 subunit (human)	BC026988|Rpp14|67053|ribonuclease P 14 subunit (human)	BC046803|Rpp14|67053|ribonuclease P 14 subunit (human)
mm9_v1_chr7_-_134169938_134169992	2.64103	CTCF.p2	L04649|Maz|17188|MYC-associated zinc finger protein (purine-binding transcription factor)	NM_010772|Maz|17188|MYC-associated zinc finger protein (purine-binding transcription factor)
mm9_v1_chr11_+_101594316_101594341	2.63644	CTCF.p2	AK172600|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8	AK078552|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8	AK142226|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8	BC065064|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8
mm9_v1_chr17_-_27327042_27327306	2.6313	CTCF.p2	AK217086|Lemd2|224640|LEM domain containing 2	AK212367|Lemd2|224640|LEM domain containing 2
mm9_v1_chr8_+_87162885_87162891	2.61546	CTCF.p2	AK132071|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm9_v1_chr8_-_73397377_73397396	2.60219	CTCF.p2	AK088037|Ccdc124|234388|coiled-coil domain containing 124	AK007589|Ccdc124|234388|coiled-coil domain containing 124	BC049678|Ccdc124|234388|coiled-coil domain containing 124	NM_026964|Ccdc124|234388|coiled-coil domain containing 124
mm9_v1_chr18_-_9450104_9450192	2.58734	CTCF.p2	BC023321|Ccny|67974|cyclin Y	AK028696|Ccny|67974|cyclin Y	NM_026484|Ccny|67974|cyclin Y	AK014201|Ccny|67974|cyclin Y
mm9_v1_chr14_+_48092305_48092319	2.58502	CTCF.p2	AK171630|Fbxo34|78938|F-box protein 34
mm9_v1_chr18_+_42671130_42671146	2.58133	CTCF.p2	NM_001039474|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr2_-_148701164_148701201	2.56152	CTCF.p2	AK161856|Cst3|13010|cystatin C	AK151160|Cst3|13010|cystatin C	AK013676|Cst3|13010|cystatin C	AK153533|Cst3|13010|cystatin C	AK166430|Cst3|13010|cystatin C
mm9_v1_chr9_-_107612238_107612349	2.55222	CTCF.p2	AK140340|Sema3f|20350|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
mm9_v1_chr8_+_114060341_114060576	2.54924	CTCF.p2	AK079338|Znrf1|170737|zinc and ring finger 1	NM_001168621|Znrf1|170737|zinc and ring finger 1	NM_001168622|Znrf1|170737|zinc and ring finger 1	NM_133206|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr17_+_56752805_56752873	2.54037	CTCF.p2	NM_018730|Rpl36|54217|ribosomal protein L36	AK003115|Rpl36|54217|ribosomal protein L36	BC086914|Rpl36|54217|ribosomal protein L36	BC021595|Rpl36|54217|ribosomal protein L36	X75895|Rpl36|54217|ribosomal protein L36
mm9_v1_chr5_-_130500116_130500235	2.52571	CTCF.p2	AK148764|Asl|109900|argininosuccinate lyase	AK168739|Asl|109900|argininosuccinate lyase	AK138423|Asl|109900|argininosuccinate lyase	BC016670|Asl|109900|argininosuccinate lyase	NM_133768|Asl|109900|argininosuccinate lyase	AK010922|Asl|109900|argininosuccinate lyase	AK076453|Asl|109900|argininosuccinate lyase	AK140160|Asl|109900|argininosuccinate lyase
mm9_v1_chr14_-_25306175_25306259	2.5125	CTCF.p2	BC151168|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC151002|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC151169|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	AK143315|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC053071|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A
mm9_v1_chr5_-_67009869_67009948	2.50591	CTCF.p2	BC076587|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	AK169495|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	AK004792|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	NM_009686|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	AK167649|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	AK032770|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2
mm9_v1_chr14_+_48092244_48092299	2.49355	CTCF.p2	BC049155|Fbxo34|78938|F-box protein 34	AK013711|Fbxo34|78938|F-box protein 34
mm9_v1_chr17_+_45700882_45700945	2.48317	CTCF.p2	AK155551|Slc35b2|73836|solute carrier family 35, member B2	AK144403|Slc35b2|73836|solute carrier family 35, member B2	AK003377|Slc35b2|73836|solute carrier family 35, member B2	AK090329|Slc35b2|73836|solute carrier family 35, member B2	AK152362|Slc35b2|73836|solute carrier family 35, member B2	BC025875|Slc35b2|73836|solute carrier family 35, member B2	BC036992|Slc35b2|73836|solute carrier family 35, member B2	AF414190|Slc35b2|73836|solute carrier family 35, member B2	AK154868|Slc35b2|73836|solute carrier family 35, member B2
mm9_v1_chr3_+_121948541_121948621	2.48107	CTCF.p2	BC132404|Gclm|14630|glutamate-cysteine ligase, modifier subunit	BC138783|Gclm|14630|glutamate-cysteine ligase, modifier subunit
mm9_v1_chr10_-_127846807_127846878	2.48051	CTCF.p2	BC026942|Obfc2b|69917|oligonucleotide/oligosaccharide-binding fold containing 2B	DQ158906|Obfc2b|69917|oligonucleotide/oligosaccharide-binding fold containing 2B	NM_027257|Obfc2b|69917|oligonucleotide/oligosaccharide-binding fold containing 2B
mm9_v1_chr7_+_57033711_57033769	2.46099	CTCF.p2	AK010534|Prmt3|71974|protein arginine N-methyltransferase 3	AK031738|Prmt3|71974|protein arginine N-methyltransferase 3	NM_133740|Prmt3|71974|protein arginine N-methyltransferase 3	AK155236|Prmt3|71974|protein arginine N-methyltransferase 3	AK008118|Prmt3|71974|protein arginine N-methyltransferase 3	AK049836|Prmt3|71974|protein arginine N-methyltransferase 3	BC050775|Prmt3|71974|protein arginine N-methyltransferase 3	AK086646|Prmt3|71974|protein arginine N-methyltransferase 3
mm9_v1_chr12_+_9036802_9036858	2.44693	CTCF.p2	AK078146|Ttc32|75516|tetratricopeptide repeat domain 32	NM_029321|Ttc32|75516|tetratricopeptide repeat domain 32	AK005950|Ttc32|75516|tetratricopeptide repeat domain 32	BC119273|Ttc32|75516|tetratricopeptide repeat domain 32	AK144458|Ttc32|75516|tetratricopeptide repeat domain 32
mm9_v1_chr19_-_12576485_12576634	2.44592	CTCF.p2	NM_172442|Dtx4|207521|deltex 4 homolog (Drosophila)
mm9_v1_chr5_+_106161255_106161339	2.44426	CTCF.p2	AK167985|Lrrc8d|231549|leucine rich repeat containing 8D	AK181633|Lrrc8d|231549|leucine rich repeat containing 8D
mm9_v1_chrX_-_151650871_151650951	2.44346	CTCF.p2	AK154445|Sat1|20229|spermidine/spermine N1-acetyl transferase 1	AK002531|Sat1|20229|spermidine/spermine N1-acetyl transferase 1	BC058696|Sat1|20229|spermidine/spermine N1-acetyl transferase 1	NM_009121|Sat1|20229|spermidine/spermine N1-acetyl transferase 1
mm9_v1_chr14_+_66915902_66915902	2.41546	CTCF.p2	AK003000|Trim35|66854|tripartite motif-containing 35	AK020775|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr12_-_101758964_101759037	2.41398	CTCF.p2	AK046740|Ttc7b|104718|tetratricopeptide repeat domain 7B	AK148363|Ttc7b|104718|tetratricopeptide repeat domain 7B	NM_001033213|Ttc7b|104718|tetratricopeptide repeat domain 7B
mm9_v1_chr11_+_49944855_49944942	2.40822	CTCF.p2	NM_029745|Tbc1d9b|76795|TBC1 domain family, member 9B	BC062928|Tbc1d9b|76795|TBC1 domain family, member 9B	AK166472|Tbc1d9b|76795|TBC1 domain family, member 9B	BC065080|Tbc1d9b|76795|TBC1 domain family, member 9B	AK035457|Tbc1d9b|76795|TBC1 domain family, member 9B	AK147964|Tbc1d9b|76795|TBC1 domain family, member 9B	AK049999|Tbc1d9b|76795|TBC1 domain family, member 9B	BC065130|Tbc1d9b|76795|TBC1 domain family, member 9B	AK172999|Tbc1d9b|76795|TBC1 domain family, member 9B
mm9_v1_chr11_+_100488707_100488855	2.40496	CTCF.p2	AK201688|Nkiras2|71966|NFKB inhibitor interacting Ras-like protein 2
mm9_v1_chr19_+_5050805_5050813	2.40492	CTCF.p2	BC011277|Rin1|225870|Ras and Rab interactor 1	NM_145495|Rin1|225870|Ras and Rab interactor 1
mm9_v1_chr10_+_17775737_17775881	2.40158	CTCF.p2	NM_001111065|Reps1|19707|RalBP1 associated Eps domain containing protein	NM_009048|Reps1|19707|RalBP1 associated Eps domain containing protein	BC087547|Reps1|19707|RalBP1 associated Eps domain containing protein	AK150284|Reps1|19707|RalBP1 associated Eps domain containing protein	AK151309|Reps1|19707|RalBP1 associated Eps domain containing protein
mm9_v1_chr5_-_144076737_144077070	2.4006	CTCF.p2	AK054218|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	BC082321|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	BC058940|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK050733|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	BC079853|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK041667|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK172614|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK086571|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK144964|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK053801|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK087531|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	NM_172726|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene
mm9_v1_chr17_-_15664238_15664282	2.39993	CTCF.p2	DQ906042|Pdcd2|18567|programmed cell death 2	U10903|Pdcd2|18567|programmed cell death 2	AK045985|Pdcd2|18567|programmed cell death 2	NM_008799|Pdcd2|18567|programmed cell death 2
mm9_v1_chr15_-_99200748_99200838	2.39597	CTCF.p2	BC131961|Fmnl3|22379|formin-like 3	BC085094|Fmnl3|22379|formin-like 3	AK143308|Fmnl3|22379|formin-like 3	AK129473|Fmnl3|22379|formin-like 3
mm9_v1_chr1_-_137327006_137327084	2.3733	CTCF.p2	AJ309238|Ipo9|226432|importin 9	AF273672|Ipo9|226432|importin 9	AF273673|Ipo9|226432|importin 9	AK036687|Ipo9|226432|importin 9	BC098508|Ipo9|226432|importin 9	BC056469|Ipo9|226432|importin 9	BC079546|Ipo9|226432|importin 9	NM_153774|Ipo9|226432|importin 9
mm9_v1_chr15_+_100299514_100299544	2.36704	CTCF.p2	AF287293|Letmd1|68614|LETM1 domain containing 1	AF401483|Letmd1|68614|LETM1 domain containing 1	AK045256|Letmd1|68614|LETM1 domain containing 1
mm9_v1_chr15_-_99200868_99200941	2.3482	CTCF.p2	AK139711|Fmnl3|22379|formin-like 3	AK163361|Fmnl3|22379|formin-like 3	AK170744|Fmnl3|22379|formin-like 3	NM_011711|Fmnl3|22379|formin-like 3	AK155331|Fmnl3|22379|formin-like 3
mm9_v1_chr11_-_120442851_120442887	2.33401	CTCF.p2	BC086755|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	BC004732|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK156819|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK172140|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha
mm9_v1_chr7_-_51804139_51804218	2.31909	CTCF.p2	BC052670|Pold1|18971|polymerase (DNA directed), delta 1, catalytic subunit	AK168967|Pold1|18971|polymerase (DNA directed), delta 1, catalytic subunit	Z21848|Pold1|18971|polymerase (DNA directed), delta 1, catalytic subunit	AK167569|Pold1|18971|polymerase (DNA directed), delta 1, catalytic subunit	AK088310|Pold1|18971|polymerase (DNA directed), delta 1, catalytic subunit	AK146837|Pold1|18971|polymerase (DNA directed), delta 1, catalytic subunit	AK169040|Pold1|18971|polymerase (DNA directed), delta 1, catalytic subunit	NM_011131|Pold1|18971|polymerase (DNA directed), delta 1, catalytic subunit	BC009128|Pold1|18971|polymerase (DNA directed), delta 1, catalytic subunit	AK166592|Pold1|18971|polymerase (DNA directed), delta 1, catalytic subunit
mm9_v1_chr5_+_124357243_124357339	2.31596	CTCF.p2	AK135127|Denr|68184|density-regulated protein	AK017647|Denr|68184|density-regulated protein	AK010394|Denr|68184|density-regulated protein	AK018762|Denr|68184|density-regulated protein	AK083852|Denr|68184|density-regulated protein	NM_026603|Denr|68184|density-regulated protein	BC025143|Denr|68184|density-regulated protein	BC043922|Denr|68184|density-regulated protein
mm9_v1_chr8_-_24348082_24348154	2.30166	CTCF.p2	BC002156|Gins4|109145|GINS complex subunit 4 (Sld5 homolog)	AK076104|Gins4|109145|GINS complex subunit 4 (Sld5 homolog)	NM_024240|Gins4|109145|GINS complex subunit 4 (Sld5 homolog)
mm9_v1_chr7_-_100022714_100022747	2.29868	CTCF.p2	BC066148|4632434I11Rik|74041|RIKEN cDNA 4632434I11 gene	AK154915|4632434I11Rik|74041|RIKEN cDNA 4632434I11 gene	AK014608|4632434I11Rik|74041|RIKEN cDNA 4632434I11 gene	DQ400346|4632434I11Rik|74041|RIKEN cDNA 4632434I11 gene	NM_001080995|4632434I11Rik|74041|RIKEN cDNA 4632434I11 gene
mm9_v1_chr12_-_113912266_113912513	2.2985	CTCF.p2	AK154936|Akt1|11651|thymoma viral proto-oncogene 1	AK040758|Akt1|11651|thymoma viral proto-oncogene 1	X65687|Akt1|11651|thymoma viral proto-oncogene 1	BC066018|Akt1|11651|thymoma viral proto-oncogene 1	NM_001165894|Akt1|11651|thymoma viral proto-oncogene 1	NM_009652|Akt1|11651|thymoma viral proto-oncogene 1
mm9_v1_chr2_-_158187209_158187269	2.29198	CTCF.p2	AK046044|9430008C03Rik|68108|RIKEN cDNA 9430008C03 gene	AK040893|9430008C03Rik|68108|RIKEN cDNA 9430008C03 gene	AK007971|9430008C03Rik|68108|RIKEN cDNA 9430008C03 gene	AK079109|9430008C03Rik|68108|RIKEN cDNA 9430008C03 gene
mm9_v1_chr2_-_117168409_117168515	2.28014	CTCF.p2	AF106070|Rasgrp1|19419|RAS guanyl releasing protein 1
mm9_v1_chr11_+_20346399_20346399	2.261	CTCF.p2	NM_001195717|Gm12034|382492|predicted gene 12034
mm9_v1_chr14_+_77436555_77436670	2.25417	CTCF.p2	AK077161|Ccdc122|108811|coiled-coil domain containing 122	NM_175369|Ccdc122|108811|coiled-coil domain containing 122	BC096577|Ccdc122|108811|coiled-coil domain containing 122	BC138881|Ccdc122|108811|coiled-coil domain containing 122	BC138883|Ccdc122|108811|coiled-coil domain containing 122	BC145455|Ccdc122|108811|coiled-coil domain containing 122
mm9_v1_chr3_+_96449506_96449522	2.24833	CTCF.p2	NM_001081053|Itga10|213119|integrin, alpha 10	BC115770|Itga10|213119|integrin, alpha 10
mm9_v1_chr4_+_48553291_48553370	2.22913	CTCF.p2	BC052696|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	AK013199|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	NM_028137|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene
mm9_v1_chr2_-_25477449_25477538	2.21556	CTCF.p2	BC048537|Tmem141|51875|transmembrane protein 141	AK004380|Tmem141|51875|transmembrane protein 141	NM_001040130|Tmem141|51875|transmembrane protein 141	NM_001109993|Tmem141|51875|transmembrane protein 141
mm9_v1_chr5_+_122841885_122841976	2.20167	CTCF.p2	AK003485|Arpc3|56378|actin related protein 2/3 complex, subunit 3	AK005437|Arpc3|56378|actin related protein 2/3 complex, subunit 3	AK171651|Arpc3|56378|actin related protein 2/3 complex, subunit 3	BC013618|Arpc3|56378|actin related protein 2/3 complex, subunit 3	NM_019824|Arpc3|56378|actin related protein 2/3 complex, subunit 3	BC054440|Arpc3|56378|actin related protein 2/3 complex, subunit 3	BC055036|Arpc3|56378|actin related protein 2/3 complex, subunit 3
mm9_v1_chr6_-_83725776_83725818	2.19051	CTCF.p2	AK157834|Tex261|21766|testis expressed gene 261	NM_009357|Tex261|21766|testis expressed gene 261
mm9_v1_chr5_+_109098124_109098124	2.18232	CTCF.p2	NM_008325|Idua|15932|iduronidase, alpha-L-
mm9_v1_chr6_-_83725683_83725774	2.18033	CTCF.p2	AK185442|Tex261|21766|testis expressed gene 261	AK201329|Tex261|21766|testis expressed gene 261	BC003802|Tex261|21766|testis expressed gene 261	X80426|Tex261|21766|testis expressed gene 261	X81058|Tex261|21766|testis expressed gene 261	AK149789|Tex261|21766|testis expressed gene 261
mm9_v1_chr4_-_126145660_126145664	2.17748	CTCF.p2	BC129915|Eif2c1|236511|eukaryotic translation initiation factor 2C, 1	AB081471|Eif2c1|236511|eukaryotic translation initiation factor 2C, 1	BC129914|Eif2c1|236511|eukaryotic translation initiation factor 2C, 1	NM_153403|Eif2c1|236511|eukaryotic translation initiation factor 2C, 1
mm9_v1_chr18_+_68497163_68497259	2.17548	CTCF.p2	NM_013596|Mc5r|17203|melanocortin 5 receptor	U08354|Mc5r|17203|melanocortin 5 receptor	BC100720|Mc5r|17203|melanocortin 5 receptor	BC100721|Mc5r|17203|melanocortin 5 receptor	BC100722|Mc5r|17203|melanocortin 5 receptor	BC100723|Mc5r|17203|melanocortin 5 receptor
mm9_v1_chr10_+_127795461_127795537	2.15519	CTCF.p2	DQ403125|Cs|12974|citrate synthase	AK012104|Cs|12974|citrate synthase
mm9_v1_chr11_+_98799013_98799173	2.12341	CTCF.p2	S56656|Rara|19401|retinoic acid receptor, alpha	BC040383|Rara|19401|retinoic acid receptor, alpha	NM_001177302|Rara|19401|retinoic acid receptor, alpha	AK154623|Rara|19401|retinoic acid receptor, alpha
mm9_v1_chr13_-_58227306_58227430	2.12275	CTCF.p2	BC048746|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr5_+_109098283_109098358	2.10746	CTCF.p2	AK169998|Idua|15932|iduronidase, alpha-L-	AK031414|Idua|15932|iduronidase, alpha-L-	AK045330|Idua|15932|iduronidase, alpha-L-	BC057935|Idua|15932|iduronidase, alpha-L-
mm9_v1_chr2_+_80171439_80171527	2.10487	CTCF.p2	AK190686|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10	AK204346|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10	AK206826|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10	BC002207|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10
mm9_v1_chr7_-_134160552_134160577	2.10367	CTCF.p2	AK082775|2900092E17Rik|67278|RIKEN cDNA 2900092E17 gene
mm9_v1_chr7_+_17477134_17477134	2.09627	CTCF.p2	AK144609|Gng8|14709|guanine nucleotide binding protein (G protein), gamma 8	NM_010320|Gng8|14709|guanine nucleotide binding protein (G protein), gamma 8
mm9_v1_chr9_+_90057741_90057815	2.09156	CTCF.p2	NM_001003911|Adamts7|108153|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
mm9_v1_chr11_-_74982551_74982653	2.08681	CTCF.p2	AF036334|Hic1|15248|hypermethylated in cancer 1
mm9_v1_chr2_-_11423651_11423672	2.04577	CTCF.p2	AF294617|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	AK154607|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	BC057320|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm9_v1_chr3_+_67234003_67234103	2.03492	CTCF.p2	NM_138591|Gfm1|28030|G elongation factor, mitochondrial 1	AK033214|Gfm1|28030|G elongation factor, mitochondrial 1	BC013093|Gfm1|28030|G elongation factor, mitochondrial 1	BC031772|Gfm1|28030|G elongation factor, mitochondrial 1	AF315511|Gfm1|28030|G elongation factor, mitochondrial 1
mm9_v1_chr15_+_97622785_97622875	2.02149	CTCF.p2	AK195068|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK196553|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK214093|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK216369|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1
mm9_v1_chr19_+_6400566_6400582	2.0209	CTCF.p2	AF081193|Rasgrp2|19395|RAS, guanyl releasing protein 2	U78171|Rasgrp2|19395|RAS, guanyl releasing protein 2	NM_011242|Rasgrp2|19395|RAS, guanyl releasing protein 2
mm9_v1_chr3_+_154259975_154260228	2.01064	CTCF.p2	NM_009968|Cryz|12972|crystallin, zeta	S70056|Cryz|12972|crystallin, zeta	BC003800|Cryz|12972|crystallin, zeta	AK098082|Cryz|12972|crystallin, zeta	AK134281|Cryz|12972|crystallin, zeta	BC043076|Cryz|12972|crystallin, zeta
mm9_v1_chr2_+_3035629_3035684	2.00903	CTCF.p2	NM_001081161|Fam171a1|269233|family with sequence similarity 171, member A1	AK032237|Fam171a1|269233|family with sequence similarity 171, member A1
mm9_v1_chr7_-_134404120_134404235	1.99774	CTCF.p2	AK010606|Dctpp1|66422|dCTP pyrophosphatase 1	AK003643|Dctpp1|66422|dCTP pyrophosphatase 1	AK010508|Dctpp1|66422|dCTP pyrophosphatase 1	AF110764|Dctpp1|66422|dCTP pyrophosphatase 1	NM_023203|Dctpp1|66422|dCTP pyrophosphatase 1	BC004623|Dctpp1|66422|dCTP pyrophosphatase 1
mm9_v1_chr6_+_129130632_129130672	1.98853	CTCF.p2	AY320031|Clec2d|93694|C-type lectin domain family 2, member d	AF321553|Clec2d|93694|C-type lectin domain family 2, member d	NM_053109|Clec2d|93694|C-type lectin domain family 2, member d	AF350409|Clec2d|93694|C-type lectin domain family 2, member d	BC106776|Clec2d|93694|C-type lectin domain family 2, member d
mm9_v1_chr19_-_43827386_43827505	1.98501	CTCF.p2	AK051792|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	BC021498|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	AK141631|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	BC011509|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	AK048099|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	NM_144874|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)
mm9_v1_chr10_+_79256298_79256486	1.97758	CTCF.p2	AK082163|Palm|18483|paralemmin	NM_001161747|Palm|18483|paralemmin	NM_023128|Palm|18483|paralemmin	AK162411|Palm|18483|paralemmin	BC015297|Palm|18483|paralemmin	Y14771|Palm|18483|paralemmin	AK133733|Palm|18483|paralemmin	AK037044|Palm|18483|paralemmin
mm9_v1_chr2_-_148701126_148701154	1.96037	CTCF.p2	M59470|Cst3|13010|cystatin C	BC002072|Cst3|13010|cystatin C
mm9_v1_chr5_+_137960107_137960139	1.95965	CTCF.p2	AY176042|Gigyf1|57330|GRB10 interacting GYF protein 1	NM_031408|Gigyf1|57330|GRB10 interacting GYF protein 1	BC052875|Gigyf1|57330|GRB10 interacting GYF protein 1
mm9_v1_chrX_-_102265380_102265463	1.95903	CTCF.p2	AK153718|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC019699|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK017459|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085485|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085098|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084980|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC055463|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK080296|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK043766|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK047017|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084653|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK144934|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK157237|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK164650|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene
mm9_v1_chr15_-_76061807_76061807	1.95694	CTCF.p2	AF188013|Plec|18810|plectin	AF188014|Plec|18810|plectin	AY480033|Plec|18810|plectin	NM_001163542|Plec|18810|plectin	NM_011117|Plec|18810|plectin
mm9_v1_chrX_+_39502588_39502859	1.94532	CTCF.p2	NM_001077712|Stag2|20843|stromal antigen 2	AK050415|Stag2|20843|stromal antigen 2	AK077318|Stag2|20843|stromal antigen 2	AK020968|Stag2|20843|stromal antigen 2	AK020316|Stag2|20843|stromal antigen 2
mm9_v1_chr14_-_21212709_21212791	1.94294	CTCF.p2	AK019243|Mrps16|66242|mitochondrial ribosomal protein S16	BC024656|Mrps16|66242|mitochondrial ribosomal protein S16	AK005206|Mrps16|66242|mitochondrial ribosomal protein S16	NM_025440|Mrps16|66242|mitochondrial ribosomal protein S16
mm9_v1_chr11_+_68715045_68715136	1.93549	CTCF.p2	NM_009080|Rpl26|19941|ribosomal protein L26	AK146113|Rpl26|19941|ribosomal protein L26	X80699|Gm15772|100034726|ribosomal protein L26 pseudogene	AK152589|Rpl26|19941|ribosomal protein L26	AK146116|Gm15772|100034726|ribosomal protein L26 pseudogene	AK169131|Rpl26|19941|ribosomal protein L26	AK167245|Rpl26|19941|ribosomal protein L26	AK135286|Rpl26|19941|ribosomal protein L26	BC099481|Rpl26|19941|ribosomal protein L26	BC070397|Rpl26|19941|ribosomal protein L26
mm9_v1_chr11_-_120442889_120442950	1.9238	CTCF.p2	AK170553|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK143516|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK165241|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK170718|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	NM_133796|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha
mm9_v1_chr6_-_3295980_3296101	1.91659	CTCF.p2	AK035387|9530028C05|330256|hypothetical protein 9530028C05
mm9_v1_chr1_+_24685475_24685527	1.90618	CTCF.p2	BC027774|Lmbrd1|68421|LMBR1 domain containing 1
mm9_v1_chr6_-_129187965_129188001	1.89154	CTCF.p2	AK030376|2310001H17Rik|76432|RIKEN cDNA 2310001H17 gene	AK009064|2310001H17Rik|76432|RIKEN cDNA 2310001H17 gene
mm9_v1_chr2_-_148701203_148701269	1.88259	CTCF.p2	AK002438|Cst3|13010|cystatin C	NM_009976|Cst3|13010|cystatin C	AK014368|Cst3|13010|cystatin C	AK131728|Cst3|13010|cystatin C	AK146333|Cst3|13010|cystatin C
mm9_v1_chrX_-_99384644_99384667	1.87716	CTCF.p2	BC089348|Rps4x|20102|ribosomal protein S4, X-linked	BC089349|Rps4x|20102|ribosomal protein S4, X-linked	AK153211|Rps4x|20102|ribosomal protein S4, X-linked	AK014210|Rps4x|20102|ribosomal protein S4, X-linked	AK002445|Rps4x|20102|ribosomal protein S4, X-linked	AK010676|Rps4x|20102|ribosomal protein S4, X-linked	AK010921|Rps4x|20102|ribosomal protein S4, X-linked	AK012429|Rps4x|20102|ribosomal protein S4, X-linked	AK088410|Rps4x|20102|ribosomal protein S4, X-linked	AK135369|Rps4x|20102|ribosomal protein S4, X-linked	AK010624|Rps4x|20102|ribosomal protein S4, X-linked
mm9_v1_chr17_-_66300454_66300558	1.87409	CTCF.p2	AF292033|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	AJ297390|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	BC004850|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	AK168547|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	AK033504|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	AK168633|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	AK049646|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	NM_023053|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)
mm9_v1_chr8_-_26212242_26212282	1.86165	CTCF.p2	AK042324|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	AK078212|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	NM_031257|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
mm9_v1_chr2_+_112219335_112219462	1.84527	CTCF.p2	AK036861|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	NM_024254|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK168639|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK049599|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK151464|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK010654|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK152570|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC003216|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC012402|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC080661|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK162183|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene
mm9_v1_chr6_+_91706816_91706893	1.82872	CTCF.p2	AK165837|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm9_v1_chr5_+_30960335_30960404	1.8235	CTCF.p2	AK185707|4930471M23Rik|74919|RIKEN cDNA 4930471M23 gene
mm9_v1_chr10_+_126602182_126602286	1.82321	CTCF.p2	AK144484|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	BC057199|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	NM_008080|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	BC019969|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm9_v1_chr4_-_106925932_106925954	1.82154	CTCF.p2	AK020847|Lrrc42|77809|leucine rich repeat containing 42
mm9_v1_chr6_+_59158860_59158986	1.81478	CTCF.p2	NM_001081145|Tigd2|68140|tigger transposable element derived 2	AK019456|Tigd2|68140|tigger transposable element derived 2	AK005391|Tigd2|68140|tigger transposable element derived 2
mm9_v1_chr18_-_36675393_36675437	1.80967	CTCF.p2	L07264|Hbegf|15200|heparin-binding EGF-like growth factor	AK145548|Hbegf|15200|heparin-binding EGF-like growth factor	AK160575|Hbegf|15200|heparin-binding EGF-like growth factor	BC089607|Hbegf|15200|heparin-binding EGF-like growth factor	AK052084|Hbegf|15200|heparin-binding EGF-like growth factor
mm9_v1_chr2_-_33286793_33286890	1.8093	CTCF.p2	NM_001085507|Zbtb34|241311|zinc finger and BTB domain containing 34
mm9_v1_chr17_-_24615972_24616025	1.8087	CTCF.p2	AF237676|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK002751|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK083731|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	BC015279|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK048102|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK038515|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK077680|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK088951|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK040100|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	NM_019988|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)
mm9_v1_chr8_-_127472316_127472326	1.7969	CTCF.p2	AF453878|Egln1|112405|EGL nine homolog 1 (C. elegans)
mm9_v1_chr7_+_134615022_134615162	1.79646	CTCF.p2	BC055033|Prr14|233895|proline rich 14	NM_145589|Prr14|233895|proline rich 14	AK133884|Prr14|233895|proline rich 14
mm9_v1_chr13_+_51196154_51196300	1.78946	CTCF.p2	AK168544|Spin1|20729|spindlin 1	NM_146043|Spin1|20729|spindlin 1	BC016517|Spin1|20729|spindlin 1	AK134259|Spin1|20729|spindlin 1
mm9_v1_chr3_-_51129908_51129958	1.78878	CTCF.p2	AF256216|Elf2|69257|E74-like factor 2	AF256217|Elf2|69257|E74-like factor 2	NM_023502|Elf2|69257|E74-like factor 2	BC092057|Elf2|69257|E74-like factor 2
mm9_v1_chrX_-_71176073_71176206	1.77705	CTCF.p2	BC004830|Renbp|19703|renin binding protein	AK167648|Renbp|19703|renin binding protein	AK014347|Renbp|19703|renin binding protein	BC014821|Renbp|19703|renin binding protein	BC035455|Renbp|19703|renin binding protein	BC034846|Renbp|19703|renin binding protein	AK146652|Renbp|19703|renin binding protein	AY183138|Renbp|19703|renin binding protein	NM_001164704|Renbp|19703|renin binding protein	NM_023132|Renbp|19703|renin binding protein
mm9_v1_chr4_-_3761538_3761694	1.75942	CTCF.p2	AK150667|Rps20|67427|ribosomal protein S20
mm9_v1_chr14_+_103469532_103469618	1.74796	CTCF.p2	BC141314|Cln5|211286|ceroid-lipofuscinosis, neuronal 5	BC141315|Cln5|211286|ceroid-lipofuscinosis, neuronal 5	AK144635|Cln5|211286|ceroid-lipofuscinosis, neuronal 5	BC025487|Cln5|211286|ceroid-lipofuscinosis, neuronal 5	AK032293|Cln5|211286|ceroid-lipofuscinosis, neuronal 5
mm9_v1_chr16_-_17132372_17132480	1.74299	CTCF.p2	AB043006|Sdf2l1|64136|stromal cell-derived factor 2-like 1	BC023290|Sdf2l1|64136|stromal cell-derived factor 2-like 1	BC053425|Sdf2l1|64136|stromal cell-derived factor 2-like 1	BC053438|Sdf2l1|64136|stromal cell-derived factor 2-like 1	NM_022324|Sdf2l1|64136|stromal cell-derived factor 2-like 1
mm9_v1_chr11_+_57822347_57822565	1.73926	CTCF.p2	NM_028451|Larp1|73158|La ribonucleoprotein domain family, member 1
mm9_v1_chr10_+_11001072_11001225	1.7359	CTCF.p2	NM_027968|Fbxo30|71865|F-box protein 30	AK083479|Fbxo30|71865|F-box protein 30	AK135274|Fbxo30|71865|F-box protein 30
mm9_v1_chr3_-_90294832_90294961	1.73294	CTCF.p2	AF086838|Snapin|20615|SNAP-associated protein	AK152057|Snapin|20615|SNAP-associated protein	BC048691|Snapin|20615|SNAP-associated protein	AK007458|Snapin|20615|SNAP-associated protein	AK044085|Snapin|20615|SNAP-associated protein	AK048007|Snapin|20615|SNAP-associated protein	AK135006|Snapin|20615|SNAP-associated protein	AK077840|Snapin|20615|SNAP-associated protein	AK080718|Snapin|20615|SNAP-associated protein	AK035147|Snapin|20615|SNAP-associated protein	AK050151|Snapin|20615|SNAP-associated protein	NM_133854|Snapin|20615|SNAP-associated protein
mm9_v1_chr10_-_80813067_80813195	1.71242	CTCF.p2	AK155652|Hmg20b|15353|high mobility group 20 B	BC011334|Hmg20b|15353|high mobility group 20 B	BC071217|Hmg20b|15353|high mobility group 20 B	AF146224|Hmg20b|15353|high mobility group 20 B	AL355734|Hmg20b|15353|high mobility group 20 B	BC003924|Hmg20b|15353|high mobility group 20 B	AK155615|Hmg20b|15353|high mobility group 20 B	NM_001163165|Hmg20b|15353|high mobility group 20 B	NM_010440|Hmg20b|15353|high mobility group 20 B
mm9_v1_chr11_+_55017825_55017912	1.70638	CTCF.p2	NM_153139|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	AY211262|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	BC138556|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	BC138558|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1
mm9_v1_chr8_-_127472363_127472448	1.70524	CTCF.p2	BC083146|Egln1|112405|EGL nine homolog 1 (C. elegans)
mm9_v1_chr17_-_71196116_71196116	1.66817	CTCF.p2	NM_001164077|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chr8_+_90796301_90796301	1.66423	CTCF.p2	NM_007406|Adcy7|11513|adenylate cyclase 7	U12919|Adcy7|11513|adenylate cyclase 7
mm9_v1_chr11_-_120442448_120442571	1.66108	CTCF.p2	AK077343|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha
mm9_v1_chr8_-_112692071_112692144	1.65171	CTCF.p2	BC017646|Calb2|12308|calbindin 2	NM_007586|Calb2|12308|calbindin 2	AK032171|Calb2|12308|calbindin 2
mm9_v1_chr9_+_90057930_90058082	1.64019	CTCF.p2	BC076575|Adamts7|108153|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	BC141173|Adamts7|108153|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	BC145491|Adamts7|108153|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	AY551090|Adamts7|108153|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
mm9_v1_chr9_-_64101429_64101455	1.63332	CTCF.p2	AK154793|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr16_-_16358625_16358644	1.62889	CTCF.p2	AK154123|Dnm1l|74006|dynamin 1-like	BC040777|Dnm1l|74006|dynamin 1-like
mm9_v1_chr10_-_60610398_60610452	1.62836	CTCF.p2	NM_009163|Sgpl1|20397|sphingosine phosphate lyase 1
mm9_v1_chr4_+_135476603_135476713	1.62527	CTCF.p2	NM_024243|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK150890|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK151361|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK151879|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK170503|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK020610|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK002230|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK089958|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK151258|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK165604|Fuca1|71665|fucosidase, alpha-L- 1, tissue	BC003235|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK053323|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK151908|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK152070|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK150526|Fuca1|71665|fucosidase, alpha-L- 1, tissue
mm9_v1_chr5_+_145529646_145529663	1.62172	CTCF.p2	NM_001081362|Trrap|100683|transformation/transcription domain-associated protein	AK147241|Trrap|100683|transformation/transcription domain-associated protein
mm9_v1_chr18_+_74375999_74376040	1.61988	CTCF.p2	BC030938|Cxxc1|74322|CXXC finger 1 (PHD domain)
mm9_v1_chr19_-_45890238_45890540	1.61302	CTCF.p2	AJ278536|Kcnip2|80906|Kv channel-interacting protein 2	AJ278537|Kcnip2|80906|Kv channel-interacting protein 2	AF439339|Kcnip2|80906|Kv channel-interacting protein 2	AF439340|Kcnip2|80906|Kv channel-interacting protein 2	AF439341|Kcnip2|80906|Kv channel-interacting protein 2	DQ148496|Kcnip2|80906|Kv channel-interacting protein 2	DQ148497|Kcnip2|80906|Kv channel-interacting protein 2	DQ148498|Kcnip2|80906|Kv channel-interacting protein 2	NM_030716|Kcnip2|80906|Kv channel-interacting protein 2	NM_145703|Kcnip2|80906|Kv channel-interacting protein 2	NM_145704|Kcnip2|80906|Kv channel-interacting protein 2	BC132215|Kcnip2|80906|Kv channel-interacting protein 2	BC138496|Kcnip2|80906|Kv channel-interacting protein 2	BC056434|Kcnip2|80906|Kv channel-interacting protein 2
mm9_v1_chr14_+_45949451_45949542	1.60538	CTCF.p2	AK012174|Psmc6|67089|proteasome (prosome, macropain) 26S subunit, ATPase, 6	BC116752|Psmc6|67089|proteasome (prosome, macropain) 26S subunit, ATPase, 6	BC119168|Psmc6|67089|proteasome (prosome, macropain) 26S subunit, ATPase, 6	NM_025959|Psmc6|67089|proteasome (prosome, macropain) 26S subunit, ATPase, 6	AK144728|Psmc6|67089|proteasome (prosome, macropain) 26S subunit, ATPase, 6	AK014354|Psmc6|67089|proteasome (prosome, macropain) 26S subunit, ATPase, 6	BC037099|Psmc6|67089|proteasome (prosome, macropain) 26S subunit, ATPase, 6	AK166961|Psmc6|67089|proteasome (prosome, macropain) 26S subunit, ATPase, 6	BC043044|Psmc6|67089|proteasome (prosome, macropain) 26S subunit, ATPase, 6	BC057997|Psmc6|67089|proteasome (prosome, macropain) 26S subunit, ATPase, 6
mm9_v1_chr2_+_163428044_163428072	1.59766	CTCF.p2	AK039450|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_029512|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_181734|Ttpal|76080|tocopherol (alpha) transfer protein-like
mm9_v1_chr14_+_103469432_103469514	1.59689	CTCF.p2	AK085741|Cln5|211286|ceroid-lipofuscinosis, neuronal 5	NM_001033242|Cln5|211286|ceroid-lipofuscinosis, neuronal 5	AK043247|Cln5|211286|ceroid-lipofuscinosis, neuronal 5
mm9_v1_chr10_-_105278374_105278437	1.59667	CTCF.p2	BC067068|BC067068|216292|cDNA sequence BC067068	AK144620|BC067068|216292|cDNA sequence BC067068	AK148535|BC067068|216292|cDNA sequence BC067068	NM_207522|BC067068|216292|cDNA sequence BC067068
mm9_v1_chr8_-_26212614_26212665	1.59355	CTCF.p2	AK153117|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	AK032325|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
mm9_v1_chr3_+_121948399_121948534	1.59071	CTCF.p2	AK028236|Gclm|14630|glutamate-cysteine ligase, modifier subunit	NM_008129|Gclm|14630|glutamate-cysteine ligase, modifier subunit	AK172387|Gclm|14630|glutamate-cysteine ligase, modifier subunit
mm9_v1_chr6_+_83051509_83051651	1.57487	CTCF.p2	NM_001081266|Ccdc142|243510|coiled-coil domain containing 142	AK038734|Ccdc142|243510|coiled-coil domain containing 142
mm9_v1_chr5_-_134705423_134705497	1.56805	CTCF.p2	L11455|Ncf1|17969|neutrophil cytosolic factor 1	BC055836|Ncf1|17969|neutrophil cytosolic factor 1	AK152386|Ncf1|17969|neutrophil cytosolic factor 1	AK151593|Ncf1|17969|neutrophil cytosolic factor 1	AK149668|Ncf1|17969|neutrophil cytosolic factor 1	AK171559|Ncf1|17969|neutrophil cytosolic factor 1	AK150945|Ncf1|17969|neutrophil cytosolic factor 1	AK151316|Ncf1|17969|neutrophil cytosolic factor 1	AK152992|Ncf1|17969|neutrophil cytosolic factor 1	AK162308|Ncf1|17969|neutrophil cytosolic factor 1	AK162623|Ncf1|17969|neutrophil cytosolic factor 1	AK170462|Ncf1|17969|neutrophil cytosolic factor 1	AB002663|Ncf1|17969|neutrophil cytosolic factor 1	AK149619|Ncf1|17969|neutrophil cytosolic factor 1	AK149732|Ncf1|17969|neutrophil cytosolic factor 1	NM_010876|Ncf1|17969|neutrophil cytosolic factor 1
mm9_v1_chr14_-_76410654_76410753	1.56637	CTCF.p2	BC027173|Gtf2f2|68705|general transcription factor IIF, polypeptide 2	AK144858|Gtf2f2|68705|general transcription factor IIF, polypeptide 2	NM_026816|Gtf2f2|68705|general transcription factor IIF, polypeptide 2
mm9_v1_chr10_+_80085486_80085637	1.53601	CTCF.p2	AK152413|Csnk1g2|103236|casein kinase 1, gamma 2	NM_134002|Csnk1g2|103236|casein kinase 1, gamma 2	BC004839|Csnk1g2|103236|casein kinase 1, gamma 2	BC035440|Csnk1g2|103236|casein kinase 1, gamma 2
mm9_v1_chr7_-_134160864_134160869	1.52567	CTCF.p2	BC003932|2900092E17Rik|67278|RIKEN cDNA 2900092E17 gene	NM_030240|2900092E17Rik|67278|RIKEN cDNA 2900092E17 gene
mm9_v1_chr19_+_5568045_5568150	1.52562	CTCF.p2	AK144121|Gm962|381201|predicted gene 962	NM_001033448|Gm962|381201|predicted gene 962	BC147482|Gm962|381201|predicted gene 962
mm9_v1_chr11_-_53113682_53113812	1.52166	CTCF.p2	D85904|Hspa4|15525|heat shock protein 4
mm9_v1_chr4_+_15885062_15885148	1.51956	CTCF.p2	AK132302|Nbn|27354|nibrin	AK134805|Nbn|27354|nibrin	AK134960|Nbn|27354|nibrin	AK159790|Nbn|27354|nibrin	BC013190|Nbn|27354|nibrin	NM_013752|Nbn|27354|nibrin	BC044773|Nbn|27354|nibrin	AF076687|Nbn|27354|nibrin	BC055061|Nbn|27354|nibrin	AK031933|Nbn|27354|nibrin	AF092840|Nbn|27354|nibrin	AK160614|Nbn|27354|nibrin
mm9_v1_chr2_+_119114464_119114567	1.51419	CTCF.p2	AK044821|Vps18|228545|vacuolar protein sorting 18 (yeast)	NM_172269|Vps18|228545|vacuolar protein sorting 18 (yeast)	AK148077|Vps18|228545|vacuolar protein sorting 18 (yeast)	AK033277|Vps18|228545|vacuolar protein sorting 18 (yeast)	AK033333|Vps18|228545|vacuolar protein sorting 18 (yeast)	AK036915|Vps18|228545|vacuolar protein sorting 18 (yeast)	AK039848|Vps18|228545|vacuolar protein sorting 18 (yeast)	AK160689|Vps18|228545|vacuolar protein sorting 18 (yeast)	AK029109|Vps18|228545|vacuolar protein sorting 18 (yeast)	AK042471|Vps18|228545|vacuolar protein sorting 18 (yeast)	BC036129|Vps18|228545|vacuolar protein sorting 18 (yeast)	BC039176|Vps18|228545|vacuolar protein sorting 18 (yeast)
mm9_v1_chr14_-_25306261_25306271	1.51247	CTCF.p2	NM_001081247|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	AK170475|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A
mm9_v1_chr17_+_45701100_45701100	1.51051	CTCF.p2	AK167343|Slc35b2|73836|solute carrier family 35, member B2	NM_028662|Slc35b2|73836|solute carrier family 35, member B2
mm9_v1_chr5_+_118619772_118619918	1.50754	CTCF.p2	BC128022|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)	D83698|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)	NM_007545|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)
mm9_v1_chr3_-_137644466_137644512	1.49907	CTCF.p2	AF163255|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AK145745|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AK146180|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AF186023|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AK079794|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AK169584|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	BC014759|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	NM_011932|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1
mm9_v1_chr1_+_21208679_21208742	1.47821	CTCF.p2	BC034768|Tmem14a|75712|transmembrane protein 14A	BC060034|Tmem14a|75712|transmembrane protein 14A	NM_029398|Tmem14a|75712|transmembrane protein 14A	AK017734|Tmem14a|75712|transmembrane protein 14A
mm9_v1_chr11_+_3414792_3414875	1.47721	CTCF.p2	BC147333|Selm|114679|selenoprotein M	BC147332|Selm|114679|selenoprotein M	AK018791|Selm|114679|selenoprotein M
mm9_v1_chr17_+_3115197_3115372	1.47431	CTCF.p2	AK171078|Scaf8|106583|SR-related CTD-associated factor 8	AK050652|Scaf8|106583|SR-related CTD-associated factor 8	BC038363|Scaf8|106583|SR-related CTD-associated factor 8	AK207242|Scaf8|106583|SR-related CTD-associated factor 8	AK211575|Scaf8|106583|SR-related CTD-associated factor 8	AK213588|Scaf8|106583|SR-related CTD-associated factor 8	AK213688|Scaf8|106583|SR-related CTD-associated factor 8	AK218304|Scaf8|106583|SR-related CTD-associated factor 8	AK215751|Scaf8|106583|SR-related CTD-associated factor 8
mm9_v1_chr11_-_116000068_116000132	1.45111	CTCF.p2	BC002319|Mrpl38|60441|mitochondrial ribosomal protein L38	BC030739|Mrpl38|60441|mitochondrial ribosomal protein L38	AK088343|Mrpl38|60441|mitochondrial ribosomal protein L38	AK151598|Mrpl38|60441|mitochondrial ribosomal protein L38	AK010798|Mrpl38|60441|mitochondrial ribosomal protein L38
mm9_v1_chr17_+_34047186_34047373	1.44981	CTCF.p2	AF006040|Daxx|13163|Fas death domain-associated protein
mm9_v1_chr11_+_3414686_3414704	1.44945	CTCF.p2	AK079576|Selm|114679|selenoprotein M	NM_053267|Selm|114679|selenoprotein M
mm9_v1_chr10_+_53316720_53316974	1.42652	CTCF.p2	AK010210|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	NM_025541|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK012376|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK031513|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK088618|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK007804|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	BC027628|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)
mm9_v1_chrX_+_71035158_71035172	1.42488	CTCF.p2	AK191259|Ssr4|20832|signal sequence receptor, delta
mm9_v1_chr3_+_137581449_137581573	1.42202	CTCF.p2	AK151432|Lamtor3|56692|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	AK088454|Lamtor3|56692|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	AF082526|Lamtor3|56692|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	NM_019920|Lamtor3|56692|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	AK159450|Lamtor3|56692|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	AK162102|Lamtor3|56692|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	BC016417|Lamtor3|56692|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	BC083155|Lamtor3|56692|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3
mm9_v1_chr10_-_80039973_80040065	1.41894	CTCF.p2	BC137607|Klf16|118445|Kruppel-like factor 16	BC137609|Klf16|118445|Kruppel-like factor 16	AF283891|Klf16|118445|Kruppel-like factor 16	AK044577|Klf16|118445|Kruppel-like factor 16	NM_078477|Klf16|118445|Kruppel-like factor 16	AK154524|Klf16|118445|Kruppel-like factor 16
mm9_v1_chr7_-_133521447_133521447	1.4181	CTCF.p2	NM_023712|Spns1|73658|spinster homolog 1 (Drosophila)
mm9_v1_chr2_-_26207531_26207599	1.41526	CTCF.p2	BC031595|Dnlz|52838|DNL-type zinc finger	BC139334|Dnlz|52838|DNL-type zinc finger	BC139333|Dnlz|52838|DNL-type zinc finger
mm9_v1_chr2_+_90585526_90585673	1.40802	CTCF.p2	NM_018828|Fnbp4|55935|formin binding protein 4	U40750|Fnbp4|55935|formin binding protein 4
mm9_v1_chr2_+_121239744_121239768	1.40719	CTCF.p2	BC033439|Pdia3|14827|protein disulfide isomerase associated 3
mm9_v1_chr5_+_109098381_109098394	1.4003	CTCF.p2	L34111|Idua|15932|iduronidase, alpha-L-
mm9_v1_chr17_-_32525894_32525894	1.39494	CTCF.p2	NM_011717|Wiz|22404|widely-interspaced zinc finger motifs
mm9_v1_chr12_-_17183330_17183422	1.38864	CTCF.p2	BC053089|Kcnf1|382571|potassium voltage-gated channel, subfamily F, member 1	AK137367|Kcnf1|382571|potassium voltage-gated channel, subfamily F, member 1
mm9_v1_chr5_-_139060905_139060950	1.36304	CTCF.p2	AK153887|Zfp68|24135|zinc finger protein 68	AK146092|Zfp68|24135|zinc finger protein 68	AK044831|Zfp68|24135|zinc finger protein 68
mm9_v1_chr7_-_29157512_29157714	1.35457	CTCF.p2	AK131110|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	AF465238|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	AK144152|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	NM_001083912|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	NM_138752|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2
mm9_v1_chr2_+_172825687_172825696	1.35354	CTCF.p2	BC059051|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	AK017746|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)
mm9_v1_chr7_-_148623536_148623545	1.35271	CTCF.p2	AK018760|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm9_v1_chr9_-_64101354_64101425	1.33347	CTCF.p2	AK167336|Map2k1|26395|mitogen-activated protein kinase kinase 1	AB041567|Map2k1|26395|mitogen-activated protein kinase kinase 1	AK146233|Map2k1|26395|mitogen-activated protein kinase kinase 1	AK146931|Map2k1|26395|mitogen-activated protein kinase kinase 1	AK165894|Map2k1|26395|mitogen-activated protein kinase kinase 1	NM_008927|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr2_-_148701108_148701112	1.3334	CTCF.p2	AF311741|Cst3|13010|cystatin C	AF483486|Cst3|13010|cystatin C	AF483487|Cst3|13010|cystatin C
mm9_v1_chr4_-_148511650_148511708	1.33164	CTCF.p2	BC138926|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	BC138927|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK011725|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	BC048521|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK012995|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK013038|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	NM_027263|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1
mm9_v1_chr7_+_16683891_16684052	1.32748	CTCF.p2	AK050623|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK171998|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	BC004804|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK013895|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK004826|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK005372|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK136689|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	NM_025898|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha
mm9_v1_chr2_+_32612744_32612905	1.31927	CTCF.p2	BC003466|Tor2a|30933|torsin family 2, member A	BC024469|Tor2a|30933|torsin family 2, member A	NM_152800|Tor2a|30933|torsin family 2, member A	AK170979|Tor2a|30933|torsin family 2, member A	AK171247|Tor2a|30933|torsin family 2, member A	AK162719|Tor2a|30933|torsin family 2, member A	AK019246|Tor2a|30933|torsin family 2, member A	AK185253|Tor2a|30933|torsin family 2, member A	AK189495|Tor2a|30933|torsin family 2, member A
mm9_v1_chr2_-_11524766_11524903	1.31557	CTCF.p2	AK012296|Rbm17|76938|RNA binding motif protein 17	BC034896|Rbm17|76938|RNA binding motif protein 17	NM_152824|Rbm17|76938|RNA binding motif protein 17
mm9_v1_chr16_+_16896561_16896699	1.3151	CTCF.p2	AK016942|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)	NM_176833|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)	AK154192|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)	AK164964|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)
mm9_v1_chr12_-_85958287_85958415	1.30488	CTCF.p2	AJ001166|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4	AK028420|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4	BC050102|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4	NM_008992|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4
mm9_v1_chr2_+_180324111_180324218	1.30068	CTCF.p2	NM_031373|Ogfr|72075|opioid growth factor receptor	AK008230|Ogfr|72075|opioid growth factor receptor	AF303894|Ogfr|72075|opioid growth factor receptor	BC049965|Ogfr|72075|opioid growth factor receptor	AK149146|Ogfr|72075|opioid growth factor receptor	BC003875|Ogfr|72075|opioid growth factor receptor	AK150115|Ogfr|72075|opioid growth factor receptor
mm9_v1_chr7_-_148623489_148623526	1.28075	CTCF.p2	AK048389|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	AK049313|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	AK010193|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	AK046874|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm9_v1_chr2_-_155479292_155479385	1.27924	CTCF.p2	BC003931|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein
mm9_v1_chr11_-_100355280_100355392	1.27872	CTCF.p2	AK136812|Acly|104112|ATP citrate lyase	AK043434|Acly|104112|ATP citrate lyase
mm9_v1_chr7_-_112959577_112959585	1.27163	CTCF.p2	AK007828|Mrpl17|27397|mitochondrial ribosomal protein L17
mm9_v1_chr10_+_79167102_79167137	1.27051	CTCF.p2	NM_001077184|Bsg|12215|basigin	NM_009768|Bsg|12215|basigin
mm9_v1_chr11_+_43247235_43247249	1.26909	CTCF.p2	AK047597|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)
mm9_v1_chr10_-_80813198_80813232	1.26261	CTCF.p2	AK153816|Hmg20b|15353|high mobility group 20 B	NM_001163166|Hmg20b|15353|high mobility group 20 B
mm9_v1_chr7_-_53965879_53966065	1.25704	CTCF.p2	BC019985|Saal1|78935|serum amyloid A-like 1	BC068127|Saal1|78935|serum amyloid A-like 1	AK019878|Saal1|78935|serum amyloid A-like 1	AK132193|Saal1|78935|serum amyloid A-like 1	NM_030233|Saal1|78935|serum amyloid A-like 1	AK030833|Saal1|78935|serum amyloid A-like 1	AK134418|Saal1|78935|serum amyloid A-like 1	AK033202|Saal1|78935|serum amyloid A-like 1	AK035874|Saal1|78935|serum amyloid A-like 1	BC087944|Saal1|78935|serum amyloid A-like 1
mm9_v1_chr6_+_124462696_124462740	1.24986	CTCF.p2	BC004637|C1ra|50909|complement component 1, r subcomponent A	BC172078|C1ra|50909|complement component 1, r subcomponent A	AK138817|C1ra|50909|complement component 1, r subcomponent A
mm9_v1_chr2_-_26207615_26207656	1.24851	CTCF.p2	AK004089|Dnlz|52838|DNL-type zinc finger	AK142070|Dnlz|52838|DNL-type zinc finger	NM_001139503|Dnlz|52838|DNL-type zinc finger	NM_001139504|Dnlz|52838|DNL-type zinc finger	NM_026828|Dnlz|52838|DNL-type zinc finger
mm9_v1_chr2_+_172825651_172825682	1.24836	CTCF.p2	AK146058|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	AK156681|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	AK014325|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	AK035278|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)
mm9_v1_chr10_+_79608206_79608223	1.24489	CTCF.p2	
mm9_v1_chr4_-_106926041_106926144	1.2364	CTCF.p2	BC031894|Lrrc42|77809|leucine rich repeat containing 42	BC027203|Lrrc42|77809|leucine rich repeat containing 42	NM_029985|Lrrc42|77809|leucine rich repeat containing 42
mm9_v1_chr6_-_3349470_3349570	1.23472	CTCF.p2	BC079894|Samd9l|209086|sterile alpha motif domain containing 9-like	AK052535|Samd9l|209086|sterile alpha motif domain containing 9-like	NM_010156|Samd9l|209086|sterile alpha motif domain containing 9-like
mm9_v1_chr11_-_69392727_69392825	1.22752	CTCF.p2	AK077570|Wrap53|216853|WD repeat containing, antisense to TP53	AK169271|Wrap53|216853|WD repeat containing, antisense to TP53	AK145219|Wrap53|216853|WD repeat containing, antisense to TP53	BC021790|Wrap53|216853|WD repeat containing, antisense to TP53	NM_144824|Wrap53|216853|WD repeat containing, antisense to TP53
mm9_v1_chr2_+_32218529_32218697	1.22515	CTCF.p2	AK165687|Ciz1|68379|CDKN1A interacting zinc finger protein 1	AK137961|Ciz1|68379|CDKN1A interacting zinc finger protein 1
mm9_v1_chr3_+_54916015_54916063	1.21905	CTCF.p2	AK159951|Spg20|229285|spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	NM_001144988|Spg20|229285|spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	NM_144895|Spg20|229285|spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	AK129171|Spg20|229285|spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	BC022921|Spg20|229285|spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	AK087388|Spg20|229285|spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
mm9_v1_chr17_+_27822162_27822200	1.2131	CTCF.p2	AK043967|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1	NM_178365|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1
mm9_v1_chr19_+_7492081_7492131	1.2116	CTCF.p2	NM_175381|2700081O15Rik|108899|RIKEN cDNA 2700081O15 gene
mm9_v1_chr1_+_40637047_40637153	1.21015	CTCF.p2	AK085681|Slc9a4|110895|solute carrier family 9 (sodium/hydrogen exchanger), member 4	AK135750|Slc9a4|110895|solute carrier family 9 (sodium/hydrogen exchanger), member 4	AK141534|Slc9a4|110895|solute carrier family 9 (sodium/hydrogen exchanger), member 4	NM_177084|Slc9a4|110895|solute carrier family 9 (sodium/hydrogen exchanger), member 4	BC120543|Slc9a4|110895|solute carrier family 9 (sodium/hydrogen exchanger), member 4
mm9_v1_chr1_+_152240466_152240735	1.20859	CTCF.p2	BC108349|Tpr|108989|translocated promoter region	BC021320|Tpr|108989|translocated promoter region	BC060955|Tpr|108989|translocated promoter region	AK157974|Tpr|108989|translocated promoter region
mm9_v1_chr1_-_181448015_181448143	1.20813	CTCF.p2	BC038482|Smyd3|69726|SET and MYND domain containing 3	BC061485|Smyd3|69726|SET and MYND domain containing 3	BC052431|Smyd3|69726|SET and MYND domain containing 3	NM_027188|Smyd3|69726|SET and MYND domain containing 3	BC019663|Smyd3|69726|SET and MYND domain containing 3	AK043988|Smyd3|69726|SET and MYND domain containing 3	AK087728|Smyd3|69726|SET and MYND domain containing 3
mm9_v1_chr7_-_28835041_28835115	1.20788	CTCF.p2	BC012708|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK167041|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	BC092265|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	L76223|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK150989|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK160718|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK167528|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK169224|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK077507|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK160644|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK169244|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK050677|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK153991|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	NM_011874|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4
mm9_v1_chr4_+_128331945_128331981	1.20755	CTCF.p2	NM_001195130|Phc2|54383|polyhomeotic-like 2 (Drosophila)
mm9_v1_chr15_+_97622089_97622513	1.20548	CTCF.p2	AK205354|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK197454|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK214110|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK177009|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK188489|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK186060|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK215813|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK190346|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK203730|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK186268|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1
mm9_v1_chr2_-_58419558_58419636	1.20516	CTCF.p2	L15436|Acvr1|11477|activin A receptor, type 1
mm9_v1_chr17_+_25910720_25910771	1.20308	CTCF.p2	AK145408|Narfl|67563|nuclear prelamin A recognition factor-like	NM_026238|Narfl|67563|nuclear prelamin A recognition factor-like	AK014038|Narfl|67563|nuclear prelamin A recognition factor-like	AK043694|Narfl|67563|nuclear prelamin A recognition factor-like	AK018548|Narfl|67563|nuclear prelamin A recognition factor-like	BC052830|Narfl|67563|nuclear prelamin A recognition factor-like	BC020468|Narfl|67563|nuclear prelamin A recognition factor-like	BC025108|Narfl|67563|nuclear prelamin A recognition factor-like
mm9_v1_chr5_+_23356371_23356439	1.1984	CTCF.p2	AK002390|2700038G22Rik|67194|RIKEN cDNA 2700038G22 gene
mm9_v1_chr8_+_19784580_19784661	1.18416	CTCF.p2	AK088897|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene
mm9_v1_chr2_+_29725034_29725054	1.17931	CTCF.p2	BC138847|Cercam|99151|cerebral endothelial cell adhesion molecule	BC052176|Cercam|99151|cerebral endothelial cell adhesion molecule
mm9_v1_chr11_+_100488379_100488445	1.17203	CTCF.p2	
mm9_v1_chr5_+_138082700_138082700	1.16522	CTCF.p2	AM275337|Sap25|751865|sin3 associated polypeptide	NM_001081962|Sap25|751865|sin3 associated polypeptide
mm9_v1_chr7_+_128061297_128061331	1.16308	CTCF.p2	AK012184|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	AK144721|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	AK146279|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	AK159723|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	BC037637|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	BC028924|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr19_-_10379361_10379369	1.16289	CTCF.p2	NM_198114|Dagla|269060|diacylglycerol lipase, alpha
mm9_v1_chr10_+_105278511_105278556	1.14459	CTCF.p2	AK135550|Ccdc59|52713|coiled-coil domain containing 59	AK019970|Ccdc59|52713|coiled-coil domain containing 59	NM_025602|Ccdc59|52713|coiled-coil domain containing 59	BC027401|Ccdc59|52713|coiled-coil domain containing 59	AK012917|Ccdc59|52713|coiled-coil domain containing 59
mm9_v1_chr4_+_107040388_107040388	1.14271	CTCF.p2	AK144734|Tmem48|72787|transmembrane protein 48	NM_028355|Tmem48|72787|transmembrane protein 48
mm9_v1_chr6_-_39760868_39760934	1.13981	CTCF.p2	BC028645|Mrps33|14548|mitochondrial ribosomal protein S33	BC087881|Mrps33|14548|mitochondrial ribosomal protein S33	AK019000|Mrps33|14548|mitochondrial ribosomal protein S33	AK144131|Mrps33|14548|mitochondrial ribosomal protein S33	Y17852|Mrps33|14548|mitochondrial ribosomal protein S33	NM_001010930|Mrps33|14548|mitochondrial ribosomal protein S33	NM_010270|Mrps33|14548|mitochondrial ribosomal protein S33
mm9_v1_chr16_+_20717874_20717914	1.13904	CTCF.p2	AK146429|Polr2h|245841|polymerase (RNA) II (DNA directed) polypeptide H	AK161617|Polr2h|245841|polymerase (RNA) II (DNA directed) polypeptide H	BC002306|Polr2h|245841|polymerase (RNA) II (DNA directed) polypeptide H	NM_145632|Polr2h|245841|polymerase (RNA) II (DNA directed) polypeptide H	BC125612|Polr2h|245841|polymerase (RNA) II (DNA directed) polypeptide H	BC125638|Polr2h|245841|polymerase (RNA) II (DNA directed) polypeptide H
mm9_v1_chr1_+_193399633_193399665	1.13879	CTCF.p2	AK052103|Ints7|77065|integrator complex subunit 7	AK085336|Ints7|77065|integrator complex subunit 7	AK034856|Ints7|77065|integrator complex subunit 7	BC054120|Ints7|77065|integrator complex subunit 7
mm9_v1_chrX_+_19636666_19636695	1.136	CTCF.p2	AK011202|Chst7|60322|carbohydrate (N-acetylglucosamino) sulfotransferase 7	AB040710|Chst7|60322|carbohydrate (N-acetylglucosamino) sulfotransferase 7	AB046929|Chst7|60322|carbohydrate (N-acetylglucosamino) sulfotransferase 7	NM_021715|Chst7|60322|carbohydrate (N-acetylglucosamino) sulfotransferase 7
mm9_v1_chr4_-_131767968_131768170	1.13595	CTCF.p2	AK083882|Ythdf2|213541|YTH domain family 2	BC028994|Ythdf2|213541|YTH domain family 2	BC014797|Ythdf2|213541|YTH domain family 2	AK150350|Ythdf2|213541|YTH domain family 2	AK150669|Ythdf2|213541|YTH domain family 2	AK151392|Ythdf2|213541|YTH domain family 2	AK151862|Ythdf2|213541|YTH domain family 2	AK159548|Ythdf2|213541|YTH domain family 2	AK031616|Ythdf2|213541|YTH domain family 2	AK144209|Ythdf2|213541|YTH domain family 2	AK034655|Ythdf2|213541|YTH domain family 2	NM_145393|Ythdf2|213541|YTH domain family 2
mm9_v1_chr11_+_3414884_3414917	1.13341	CTCF.p2	AK079358|Selm|114679|selenoprotein M	AY043488|Selm|114679|selenoprotein M	AK046034|Selm|114679|selenoprotein M	AK035312|Selm|114679|selenoprotein M	AK086243|Selm|114679|selenoprotein M
mm9_v1_chr15_-_36426538_36426542	1.12746	CTCF.p2	AB076382|Ankrd46|68839|ankyrin repeat domain 46
mm9_v1_chrX_-_151650799_151650852	1.12348	CTCF.p2	L10244|Sat1|20229|spermidine/spermine N1-acetyl transferase 1	BC108334|Sat1|20229|spermidine/spermine N1-acetyl transferase 1
mm9_v1_chr2_+_131036131_131036175	1.11821	CTCF.p2	AK009634|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene	AK002807|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene	BC048399|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene	NM_027129|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene
mm9_v1_chr2_+_29725007_29725021	1.11266	CTCF.p2	NM_207298|Cercam|99151|cerebral endothelial cell adhesion molecule	AK155384|Cercam|99151|cerebral endothelial cell adhesion molecule
mm9_v1_chr19_-_42854402_42854474	1.11067	CTCF.p2	AK171225|Hps1|192236|Hermansky-Pudlak syndrome 1 homolog (human)	BC058332|Hps1|192236|Hermansky-Pudlak syndrome 1 homolog (human)	BC089331|Hps1|192236|Hermansky-Pudlak syndrome 1 homolog (human)	AK031397|Hps1|192236|Hermansky-Pudlak syndrome 1 homolog (human)	AK154994|Hps1|192236|Hermansky-Pudlak syndrome 1 homolog (human)	NM_019424|Hps1|192236|Hermansky-Pudlak syndrome 1 homolog (human)
mm9_v1_chr1_+_39592594_39592679	1.10899	CTCF.p2	AK144692|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	AK010503|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	BC049091|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	NM_028043|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	AK167440|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	BC050812|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed
mm9_v1_chr1_-_193399412_193399424	1.10015	CTCF.p2	NM_029766|Dtl|76843|denticleless homolog (Drosophila)
mm9_v1_chr8_+_108674263_108674491	1.09385	CTCF.p2	AK028614|Pla2g15|192654|phospholipase A2, group XV	BC019373|Pla2g15|192654|phospholipase A2, group XV	NM_133792|Pla2g15|192654|phospholipase A2, group XV	AK155004|Pla2g15|192654|phospholipase A2, group XV	AK085194|Pla2g15|192654|phospholipase A2, group XV	AK163111|Pla2g15|192654|phospholipase A2, group XV	AK170814|Pla2g15|192654|phospholipase A2, group XV	AF468958|Pla2g15|192654|phospholipase A2, group XV	AK180645|Pla2g15|192654|phospholipase A2, group XV	AK188333|Pla2g15|192654|phospholipase A2, group XV	AK205252|Pla2g15|192654|phospholipase A2, group XV	AK205480|Pla2g15|192654|phospholipase A2, group XV	AK207442|Pla2g15|192654|phospholipase A2, group XV	AK211077|Pla2g15|192654|phospholipase A2, group XV	AK212406|Pla2g15|192654|phospholipase A2, group XV	AK212507|Pla2g15|192654|phospholipase A2, group XV	AK212587|Pla2g15|192654|phospholipase A2, group XV	AK212623|Pla2g15|192654|phospholipase A2, group XV	AK215050|Pla2g15|192654|phospholipase A2, group XV	AK215274|Pla2g15|192654|phospholipase A2, group XV	AK217196|Pla2g15|192654|phospholipase A2, group XV	AK219754|Pla2g15|192654|phospholipase A2, group XV
mm9_v1_chr17_-_36169573_36169660	1.09323	CTCF.p2	AF100699|H2-T23|15040|histocompatibility 2, T region locus 23	AF100700|H2-T23|15040|histocompatibility 2, T region locus 23	AF100702|H2-T23|15040|histocompatibility 2, T region locus 23	AF057279|H2-T23|15040|histocompatibility 2, T region locus 23	AF082510|H2-T23|15040|histocompatibility 2, T region locus 23	BC099472|H2-T23|15040|histocompatibility 2, T region locus 23	AB359230|H2-T23|15040|histocompatibility 2, T region locus 23	AK133502|H2-T23|15040|histocompatibility 2, T region locus 23	M11284|H2-T23|15040|histocompatibility 2, T region locus 23	NM_010398|H2-T23|15040|histocompatibility 2, T region locus 23
mm9_v1_chr2_-_4573118_4573191	1.09244	CTCF.p2	AK139720|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC058631|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC004573|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC028306|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	NM_026045|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK135890|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK035073|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK135707|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)
mm9_v1_chr4_+_48552806_48552952	1.09174	CTCF.p2	AK075956|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	NM_001145925|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	AK017795|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	AK011381|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	NM_001145924|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene
mm9_v1_chr3_-_146432922_146432972	1.0891	CTCF.p2	AK139419|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr11_+_50038815_50038936	1.0859	CTCF.p2	AK155336|Mgat4b|103534|mannoside acetylglucosaminyltransferase 4, isoenzyme B	NM_145926|Mgat4b|103534|mannoside acetylglucosaminyltransferase 4, isoenzyme B
mm9_v1_chr4_+_45354940_45354977	1.07806	CTCF.p2	AK170534|Dcaf10|242418|DDB1 and CUL4 associated factor 10	AK165246|Dcaf10|242418|DDB1 and CUL4 associated factor 10	NM_153167|Dcaf10|242418|DDB1 and CUL4 associated factor 10
mm9_v1_chr11_-_53113856_53113893	1.07413	CTCF.p2	BC003950|Hspa4|15525|heat shock protein 4	BC003770|Hspa4|15525|heat shock protein 4
mm9_v1_chr1_+_107677241_107677394	1.0698	CTCF.p2	AK138990|Tnfrsf11a|21934|tumor necrosis factor receptor superfamily, member 11a	NM_009399|Tnfrsf11a|21934|tumor necrosis factor receptor superfamily, member 11a	AF019046|Tnfrsf11a|21934|tumor necrosis factor receptor superfamily, member 11a	BC019185|Tnfrsf11a|21934|tumor necrosis factor receptor superfamily, member 11a	AK020374|Tnfrsf11a|21934|tumor necrosis factor receptor superfamily, member 11a
mm9_v1_chr9_+_21351307_21351499	1.06684	CTCF.p2	NM_021531|Carm1|59035|coactivator-associated arginine methyltransferase 1	NM_153141|Carm1|59035|coactivator-associated arginine methyltransferase 1	BC036974|Carm1|59035|coactivator-associated arginine methyltransferase 1	AK158242|Carm1|59035|coactivator-associated arginine methyltransferase 1	BC071267|Carm1|59035|coactivator-associated arginine methyltransferase 1	AF117887|Carm1|59035|coactivator-associated arginine methyltransferase 1	AK158757|Carm1|59035|coactivator-associated arginine methyltransferase 1
mm9_v1_chr8_+_97056910_97056982	1.06642	CTCF.p2	BC031801|Cpne2|234577|copine II	NM_153507|Cpne2|234577|copine II	AK160238|Cpne2|234577|copine II	AK086165|Cpne2|234577|copine II	BC022128|Cpne2|234577|copine II
mm9_v1_chr14_-_56341060_56341137	1.05684	CTCF.p2	AK002625|Rabggta|56187|Rab geranylgeranyl transferase, a subunit
mm9_v1_chr1_+_24685556_24685610	1.05229	CTCF.p2	BC025579|Lmbrd1|68421|LMBR1 domain containing 1	BC031902|Lmbrd1|68421|LMBR1 domain containing 1	AK167080|Lmbrd1|68421|LMBR1 domain containing 1	AK152170|Lmbrd1|68421|LMBR1 domain containing 1	AK153237|Lmbrd1|68421|LMBR1 domain containing 1
mm9_v1_chr5_+_62200081_62200187	1.04974	CTCF.p2	BC120827|G6pd2|14380|glucose-6-phosphate dehydrogenase 2	BC137684|G6pd2|14380|glucose-6-phosphate dehydrogenase 2	NM_019468|G6pd2|14380|glucose-6-phosphate dehydrogenase 2
mm9_v1_chr11_+_101177524_101177765	1.03889	CTCF.p2	AK140597|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK150939|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK171348|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	NM_011192|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	BC015255|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK156079|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	BC139818|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	D87911|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK178475|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK179381|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK180194|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	CT010198|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	U60330|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3
mm9_v1_chr7_+_88716050_88716233	1.03373	CTCF.p2	AK162084|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules	AK080911|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules	AK140311|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules	BC042749|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules	AK220273|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules	NM_001004185|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules
mm9_v1_chr4_+_151699834_151699937	1.03177	CTCF.p2	BC096390|Rpl22|19934|ribosomal protein L22
mm9_v1_chr10_+_74779687_74779852	1.03028	CTCF.p2	NM_009630|Adora2a|11540|adenosine A2a receptor
mm9_v1_chr12_-_21379292_21379460	1.02601	CTCF.p2	AJ007365|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC114999|Adam17|11491|a disintegrin and metallopeptidase domain 17	U69613|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC138416|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC138420|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC145270|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC026052|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK149288|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK139471|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC048792|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK137693|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK149614|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK165739|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC094655|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK144161|Adam17|11491|a disintegrin and metallopeptidase domain 17	U69614|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK142441|Adam17|11491|a disintegrin and metallopeptidase domain 17	NM_009615|Adam17|11491|a disintegrin and metallopeptidase domain 17	AB021709|Adam17|11491|a disintegrin and metallopeptidase domain 17
mm9_v1_chr3_+_96509051_96509090	1.026	CTCF.p2	AK192178|Pias3|229615|protein inhibitor of activated STAT 3	AK202691|Pias3|229615|protein inhibitor of activated STAT 3	AK206631|Pias3|229615|protein inhibitor of activated STAT 3
mm9_v1_chr16_-_11176350_11176485	1.0256	CTCF.p2	BC027330|Zc3h7a|106205|zinc finger CCCH type containing 7 A	BC029320|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK150952|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK028438|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK040507|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK166876|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK167758|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK139351|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK161148|Zc3h7a|106205|zinc finger CCCH type containing 7 A	NM_145931|Zc3h7a|106205|zinc finger CCCH type containing 7 A
mm9_v1_chr1_-_95698320_95698458	1.0235	CTCF.p2	AK210481|Dtymk|21915|deoxythymidylate kinase	AK019284|Dtymk|21915|deoxythymidylate kinase	BC030178|Dtymk|21915|deoxythymidylate kinase	S82852|Dtymk|21915|deoxythymidylate kinase	S82853|Dtymk|21915|deoxythymidylate kinase	AK011955|Dtymk|21915|deoxythymidylate kinase
mm9_v1_chr9_+_100544186_100544228	1.01645	CTCF.p2	BC069841|Stag1|20842|stromal antigen 1
mm9_v1_chr9_+_109735261_109735329	1.01105	CTCF.p2	AK004201|Nme6|54369|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)	AF051942|Nme6|54369|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)	BC002007|Nme6|54369|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)	NM_018757|Nme6|54369|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)
mm9_v1_chr19_-_5488150_5488373	1.00802	CTCF.p2	AF425647|Mus81|71711|MUS81 endonuclease homolog (yeast)	AK145858|Mus81|71711|MUS81 endonuclease homolog (yeast)	AK168514|Mus81|71711|MUS81 endonuclease homolog (yeast)	NM_027877|Mus81|71711|MUS81 endonuclease homolog (yeast)	BC026560|Mus81|71711|MUS81 endonuclease homolog (yeast)
mm9_v1_chr4_-_134989653_134989790	1.00561	CTCF.p2	AK042201|Rcan3|53902|regulator of calcineurin 3	AK155270|Rcan3|53902|regulator of calcineurin 3	NM_022980|Rcan3|53902|regulator of calcineurin 3	AK043916|Rcan3|53902|regulator of calcineurin 3
mm9_v1_chr2_-_26264694_26264752	0.993324	CTCF.p2	AK170786|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AF226683|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	BC057566|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	BC080295|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	BC052717|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	NM_033134|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AK170812|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AK080075|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AK047245|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AK158135|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AK154097|Inpp5e|64436|inositol polyphosphate-5-phosphatase E
mm9_v1_chr10_+_25079603_25079644	0.991163	CTCF.p2	AK144088|Epb4.1l2|13822|erythrocyte protein band 4.1-like 2
mm9_v1_chr4_+_125939622_125939671	0.979269	CTCF.p2	AK151747|Trappc3|27096|trafficking protein particle complex 3	BC003736|Trappc3|27096|trafficking protein particle complex 3	NM_013718|Trappc3|27096|trafficking protein particle complex 3	AF041433|Trappc3|27096|trafficking protein particle complex 3
mm9_v1_chr2_+_163899842_163899948	0.978096	CTCF.p2	BC054521|Stk4|58231|serine/threonine kinase 4	AF271360|Stk4|58231|serine/threonine kinase 4	AK028838|Stk4|58231|serine/threonine kinase 4	NM_021420|Stk4|58231|serine/threonine kinase 4
mm9_v1_chr7_-_13595141_13595224	0.966112	CTCF.p2	BC094359|Zbtb45|232879|zinc finger and BTB domain containing 45	NM_001024699|Zbtb45|232879|zinc finger and BTB domain containing 45	AK155880|Zbtb45|232879|zinc finger and BTB domain containing 45	AK166382|Zbtb45|232879|zinc finger and BTB domain containing 45	AK154877|Zbtb45|232879|zinc finger and BTB domain containing 45
mm9_v1_chr4_-_25208902_25208983	0.961666	CTCF.p2	AK032663|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC058809|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	AK129211|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	AK007993|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	AK076206|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC132195|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC138153|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	AK132697|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC080203|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC099529|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	NM_026194|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene
mm9_v1_chr5_-_140807819_140807855	0.959373	CTCF.p2	BC064776|Ftsj2|68017|FtsJ homolog 2 (E. coli)	AK077929|Ftsj2|68017|FtsJ homolog 2 (E. coli)	AK145808|Ftsj2|68017|FtsJ homolog 2 (E. coli)	AK017300|Ftsj2|68017|FtsJ homolog 2 (E. coli)	AK009656|Ftsj2|68017|FtsJ homolog 2 (E. coli)	NM_026510|Ftsj2|68017|FtsJ homolog 2 (E. coli)
mm9_v1_chr3_-_53267127_53267244	0.956366	CTCF.p2	AK133986|Nhlrc3|212114|NHL repeat containing 3	BC087903|Nhlrc3|212114|NHL repeat containing 3	BC107356|Nhlrc3|212114|NHL repeat containing 3	AK029465|Nhlrc3|212114|NHL repeat containing 3	AK033167|Nhlrc3|212114|NHL repeat containing 3	NM_172501|Nhlrc3|212114|NHL repeat containing 3	AK162824|Nhlrc3|212114|NHL repeat containing 3	AK220477|Nhlrc3|212114|NHL repeat containing 3
mm9_v1_chr2_+_121239658_121239718	0.953432	CTCF.p2	AK132459|Pdia3|14827|protein disulfide isomerase associated 3	AK088721|Pdia3|14827|protein disulfide isomerase associated 3	AK133799|Pdia3|14827|protein disulfide isomerase associated 3	AK167807|Pdia3|14827|protein disulfide isomerase associated 3	AK169611|Pdia3|14827|protein disulfide isomerase associated 3	M73329|Pdia3|14827|protein disulfide isomerase associated 3	BC003285|Pdia3|14827|protein disulfide isomerase associated 3
mm9_v1_chr14_-_56341010_56341044	0.949713	CTCF.p2	AF127656|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127657|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127658|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127659|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127660|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127661|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127662|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	NM_019519|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	BC012214|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AK146917|Rabggta|56187|Rab geranylgeranyl transferase, a subunit
mm9_v1_chr4_+_15885171_15885371	0.946435	CTCF.p2	AB016988|Nbn|27354|nibrin
mm9_v1_chr4_+_125939573_125939621	0.940274	CTCF.p2	AK168518|Trappc3|27096|trafficking protein particle complex 3
mm9_v1_chr11_+_50039104_50039134	0.939821	CTCF.p2	AB053218|Mgat4b|103534|mannoside acetylglucosaminyltransferase 4, isoenzyme B
mm9_v1_chr17_-_25411224_25411258	0.935507	CTCF.p2	AK005058|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK088508|Ube2i|22196|ubiquitin-conjugating enzyme E2I	U94402|Ube2i|22196|ubiquitin-conjugating enzyme E2I	NM_011665|Ube2i|22196|ubiquitin-conjugating enzyme E2I
mm9_v1_chr2_+_144425704_144425774	0.930053	CTCF.p2	BC026537|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK003594|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK011917|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK010822|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK002246|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK017565|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)
mm9_v1_chr2_-_120178819_120178881	0.926321	CTCF.p2	BC007479|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281050|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281051|Vps39|269338|vacuolar protein sorting 39 (yeast)	AB028844|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK141424|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK038824|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK042253|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK154103|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK170831|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK171008|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK159889|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK160109|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK084743|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_147153|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_178851|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK140041|Vps39|269338|vacuolar protein sorting 39 (yeast)
mm9_v1_chr16_+_20717922_20717989	0.925854	CTCF.p2	BC092087|Polr2h|245841|polymerase (RNA) II (DNA directed) polypeptide H
mm9_v1_chr3_+_137806411_137806513	0.910626	CTCF.p2	AK089967|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	AK145681|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	BC098478|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	AK146481|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	BC090650|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	NM_175389|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	BC141035|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2
mm9_v1_chr10_+_127675120_127675121	0.90284	CTCF.p2	AF098161|Timeless|21853|timeless homolog (Drosophila)	NM_011589|Timeless|21853|timeless homolog (Drosophila)
mm9_v1_chr14_-_47407948_47408042	0.896157	CTCF.p2	AK154479|Cnih|12793|cornichon homolog (Drosophila)	AK152432|Cnih|12793|cornichon homolog (Drosophila)	AK168154|Cnih|12793|cornichon homolog (Drosophila)	AK011200|Cnih|12793|cornichon homolog (Drosophila)	BC034868|Cnih|12793|cornichon homolog (Drosophila)	AK002293|Cnih|12793|cornichon homolog (Drosophila)	AF022811|Cnih|12793|cornichon homolog (Drosophila)	NM_009919|Cnih|12793|cornichon homolog (Drosophila)
mm9_v1_chr12_-_86217386_86217481	0.892881	CTCF.p2	BC119785|Ltbp2|16997|latent transforming growth factor beta binding protein 2	AK052980|Ltbp2|16997|latent transforming growth factor beta binding protein 2	NM_013589|Ltbp2|16997|latent transforming growth factor beta binding protein 2	AF004874|Ltbp2|16997|latent transforming growth factor beta binding protein 2
mm9_v1_chr4_+_45354988_45355012	0.891812	CTCF.p2	BC027317|Dcaf10|242418|DDB1 and CUL4 associated factor 10
mm9_v1_chr10_-_80129430_80129498	0.886402	CTCF.p2	AK194912|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	AK189980|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	AK196822|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	AK202566|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	AK204946|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2
mm9_v1_chr19_-_3912727_3912762	0.881829	CTCF.p2	BC086766|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8	AK149674|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8	BC021616|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8	AK153900|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8	AK164901|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8	AK167907|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8
mm9_v1_chr10_+_92623587_92623703	0.878623	CTCF.p2	AK078325|Cdk17|237459|cyclin-dependent kinase 17	NM_146239|Cdk17|237459|cyclin-dependent kinase 17	BC064815|Cdk17|237459|cyclin-dependent kinase 17
mm9_v1_chr12_+_71926429_71926675	0.864936	CTCF.p2	BC053929|Frmd6|319710|FERM domain containing 6	NM_028127|Frmd6|319710|FERM domain containing 6	AK054457|Frmd6|319710|FERM domain containing 6
mm9_v1_chr19_-_5366600_5366664	0.864404	CTCF.p2	AB025349|Banf1|23825|barrier to autointegration factor 1	AK088896|Banf1|23825|barrier to autointegration factor 1	AK004212|Banf1|23825|barrier to autointegration factor 1	AK012588|Banf1|23825|barrier to autointegration factor 1	BC003709|Banf1|23825|barrier to autointegration factor 1	NM_011793|Banf1|23825|barrier to autointegration factor 1	AK003025|Banf1|23825|barrier to autointegration factor 1	AK011079|Banf1|23825|barrier to autointegration factor 1	AK011100|Banf1|23825|barrier to autointegration factor 1	AK168039|Banf1|23825|barrier to autointegration factor 1
mm9_v1_chr14_+_26513611_26513728	0.863613	CTCF.p2	AK028349|Ppif|105675|peptidylprolyl isomerase F (cyclophilin F)	BC004041|Ppif|105675|peptidylprolyl isomerase F (cyclophilin F)	NM_134084|Ppif|105675|peptidylprolyl isomerase F (cyclophilin F)
mm9_v1_chr7_+_111392998_111393087	0.857163	CTCF.p2	AK171840|Trim34a|94094|tripartite motif-containing 34A	AK172135|Trim34a|94094|tripartite motif-containing 34A	AF220139|Trim34a|94094|tripartite motif-containing 34A
mm9_v1_chr17_+_21520684_21520739	0.853749	CTCF.p2	AK043955|Zfp677|210503|zinc finger protein 677	NM_172486|Zfp677|210503|zinc finger protein 677	BC057947|Zfp677|210503|zinc finger protein 677
mm9_v1_chr8_+_86090622_86090714	0.851508	CTCF.p2	AK003300|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	NM_025843|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	AK002678|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	BC034787|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	BC056984|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7
mm9_v1_chr19_-_4439350_4439433	0.84992	CTCF.p2	X84325|Rhod|11854|ras homolog gene family, member D	BC005652|Rhod|11854|ras homolog gene family, member D	AK008880|Rhod|11854|ras homolog gene family, member D	NM_007485|Rhod|11854|ras homolog gene family, member D	BC047989|Rhod|11854|ras homolog gene family, member D	D89821|Rhod|11854|ras homolog gene family, member D
mm9_v1_chr11_-_116000144_116000205	0.845341	CTCF.p2	AK013126|Mrpl38|60441|mitochondrial ribosomal protein L38	AK014632|Mrpl38|60441|mitochondrial ribosomal protein L38	AK159033|Mrpl38|60441|mitochondrial ribosomal protein L38	NM_024177|Mrpl38|60441|mitochondrial ribosomal protein L38
mm9_v1_chr2_+_90585682_90585813	0.835105	CTCF.p2	AK014018|Fnbp4|55935|formin binding protein 4	AK012167|Fnbp4|55935|formin binding protein 4	AK084018|Fnbp4|55935|formin binding protein 4	AK164543|Fnbp4|55935|formin binding protein 4
mm9_v1_chr7_-_134160841_134160854	0.833144	CTCF.p2	AK013840|2900092E17Rik|67278|RIKEN cDNA 2900092E17 gene
mm9_v1_chr7_+_116077911_116077933	0.830996	CTCF.p2	AK152037|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	NM_025344|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK002778|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK003372|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK088537|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK136797|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK010333|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F
mm9_v1_chr8_+_109555200_109555247	0.825568	CTCF.p2	AK159117|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK047821|Vps4a|116733|vacuolar protein sorting 4a (yeast)	BC018368|Vps4a|116733|vacuolar protein sorting 4a (yeast)	NM_126165|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK169949|Vps4a|116733|vacuolar protein sorting 4a (yeast)
mm9_v1_chrX_-_133277456_133277461	0.815163	CTCF.p2	NM_001168227|Morf4l2|56397|mortality factor 4 like 2
mm9_v1_chr16_+_64851768_64851933	0.804319	CTCF.p2	AK086053|Cggbp1|106143|CGG triplet repeat binding protein 1	AK049631|Cggbp1|106143|CGG triplet repeat binding protein 1	AK052195|Cggbp1|106143|CGG triplet repeat binding protein 1	BC057053|Cggbp1|106143|CGG triplet repeat binding protein 1	AK083450|Cggbp1|106143|CGG triplet repeat binding protein 1	BC043097|Cggbp1|106143|CGG triplet repeat binding protein 1	NM_178647|Cggbp1|106143|CGG triplet repeat binding protein 1
mm9_v1_chr3_+_54916066_54916113	0.79028	CTCF.p2	AK147760|Spg20|229285|spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	NM_001144987|Spg20|229285|spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
mm9_v1_chr10_-_77506267_77506354	0.778734	CTCF.p2	AF128772|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	AF128773|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	AJ132243|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	AJ243821|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	EU625343|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	BC103510|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	BC103511|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	BC103518|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	AF079536|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	AF128115|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	AF128116|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	AF128117|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	AF128118|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	AF128119|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	AF128120|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	AF128121|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	AF128122|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	AF128123|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	AF128124|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	AF128125|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	NM_009646|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	AK153690|Aire|11634|autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)
mm9_v1_chr2_-_127657532_127657609	0.777968	CTCF.p2	AF002823|Bub1|12235|budding uninhibited by benzimidazoles 1 homolog (S. cerevisiae)	AK082540|Bub1|12235|budding uninhibited by benzimidazoles 1 homolog (S. cerevisiae)	BC029116|Bub1|12235|budding uninhibited by benzimidazoles 1 homolog (S. cerevisiae)	AK021258|Bub1|12235|budding uninhibited by benzimidazoles 1 homolog (S. cerevisiae)	U89795|Bub1|12235|budding uninhibited by benzimidazoles 1 homolog (S. cerevisiae)	AK042932|Bub1|12235|budding uninhibited by benzimidazoles 1 homolog (S. cerevisiae)	NM_001113179|Bub1|12235|budding uninhibited by benzimidazoles 1 homolog (S. cerevisiae)	NM_009772|Bub1|12235|budding uninhibited by benzimidazoles 1 homolog (S. cerevisiae)	AK144213|Bub1|12235|budding uninhibited by benzimidazoles 1 homolog (S. cerevisiae)
mm9_v1_chr17_-_36248574_36248638	0.773355	CTCF.p2	AF100703|H2-T23|15040|histocompatibility 2, T region locus 23	AF041855|H2-T23|15040|histocompatibility 2, T region locus 23	L00606|H2-T23|15040|histocompatibility 2, T region locus 23	BC005648|H2-T23|15040|histocompatibility 2, T region locus 23	AK083376|C920025E04Rik|667803|RIKEN cDNA C920025E04 gene	AK083387|C920025E04Rik|667803|RIKEN cDNA C920025E04 gene
mm9_v1_chr13_+_51942043_51942063	0.772405	CTCF.p2	NM_011817|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AK002237|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AK007410|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AB021884|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	BC001989|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AF055638|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma
mm9_v1_chr11_-_114657186_114657223	0.765556	CTCF.p2	BC060053|Btbd17|72014|BTB (POZ) domain containing 17	BC122876|Btbd17|72014|BTB (POZ) domain containing 17	AK032100|Btbd17|72014|BTB (POZ) domain containing 17	NM_028055|Btbd17|72014|BTB (POZ) domain containing 17	AK046050|Btbd17|72014|BTB (POZ) domain containing 17	AK005160|Btbd17|72014|BTB (POZ) domain containing 17	BC057599|Btbd17|72014|BTB (POZ) domain containing 17
mm9_v1_chr11_+_114530028_114530110	0.761381	CTCF.p2	BC094258|Rpl38|67671|ribosomal protein L38	BC094644|Rpl38|67671|ribosomal protein L38	NM_001048058|Rpl38|67671|ribosomal protein L38	BC081447|Rpl38|67671|ribosomal protein L38
mm9_v1_chr6_+_83028608_83028623	0.758431	CTCF.p2	AK008048|Pcgf1|69837|polycomb group ring finger 1
mm9_v1_chr13_+_55794441_55794492	0.757241	CTCF.p2	AK088693|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene	BC051430|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene	NM_181278|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene
mm9_v1_chr16_-_52453104_52453136	0.752395	CTCF.p2	AK053201|Alcam|11658|activated leukocyte cell adhesion molecule	AK030851|Alcam|11658|activated leukocyte cell adhesion molecule	NM_009655|Alcam|11658|activated leukocyte cell adhesion molecule
mm9_v1_chr18_-_67712374_67712430	0.743768	CTCF.p2	BC058669|Spire1|68166|spire homolog 1 (Drosophila)	NM_194355|Spire1|68166|spire homolog 1 (Drosophila)	BC094375|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chr9_-_113935832_113935880	0.74249	CTCF.p2	AK013142|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK089994|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145665|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145998|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK045742|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC096582|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK141177|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK163472|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK044693|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK039010|Fbxl2|72179|F-box and leucine-rich repeat protein 2	NM_178624|Fbxl2|72179|F-box and leucine-rich repeat protein 2
mm9_v1_chr6_+_85865712_85865731	0.740049	CTCF.p2	NM_001170488|Tprkb|69786|Tp53rk binding protein	NM_176842|Tprkb|69786|Tp53rk binding protein	AK007695|Tprkb|69786|Tp53rk binding protein	BC027162|Tprkb|69786|Tp53rk binding protein
mm9_v1_chr12_+_25659777_25659836	0.736462	CTCF.p2	AK021172|Kidins220|77480|kinase D-interacting substrate 220	NM_001081378|Kidins220|77480|kinase D-interacting substrate 220	BC157898|Kidins220|77480|kinase D-interacting substrate 220
mm9_v1_chr3_+_142223490_142223591	0.736109	CTCF.p2	U44731|Gbp3|55932|guanylate binding protein 3
mm9_v1_chr7_+_52690164_52690415	0.732854	CTCF.p2	NM_030678|Gys1|14936|glycogen synthase 1, muscle	AK169344|Gys1|14936|glycogen synthase 1, muscle	AK170404|Gys1|14936|glycogen synthase 1, muscle	AK171426|Gys1|14936|glycogen synthase 1, muscle	AK171148|Gys1|14936|glycogen synthase 1, muscle	AK170585|Gys1|14936|glycogen synthase 1, muscle	X94616|Gys1|14936|glycogen synthase 1, muscle	BC131687|Gys1|14936|glycogen synthase 1, muscle	BC131688|Gys1|14936|glycogen synthase 1, muscle	BC152550|Gys1|14936|glycogen synthase 1, muscle	U53218|Gys1|14936|glycogen synthase 1, muscle	BC019389|Gys1|14936|glycogen synthase 1, muscle
mm9_v1_chr9_+_108197453_108197584	0.7256	CTCF.p2	
mm9_v1_chr2_+_26775279_26775409	0.725386	CTCF.p2	AK215042|Surf2|20931|surfeit gene 2
mm9_v1_chr15_-_36426543_36426556	0.71461	CTCF.p2	BC035553|Ankrd46|68839|ankyrin repeat domain 46	NM_175134|Ankrd46|68839|ankyrin repeat domain 46
mm9_v1_chr11_+_3414983_3415036	0.709367	CTCF.p2	BC019742|Selm|114679|selenoprotein M
mm9_v1_chr10_+_79611013_79611064	0.707209	CTCF.p2	AK164324|Midn|59090|midnolin	AK164651|Midn|59090|midnolin	AB036882|Midn|59090|midnolin	NM_021565|Midn|59090|midnolin	BC034719|Midn|59090|midnolin
mm9_v1_chr17_+_29627697_29627792	0.703123	CTCF.p2	AK158445|Pim1|18712|proviral integration site 1	BC042885|Pim1|18712|proviral integration site 1
mm9_v1_chr15_-_94420206_94420335	0.703033	CTCF.p2	AY267188|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK193163|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK147990|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	BC094034|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	NM_008971|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	U82324|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	BC015081|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK168142|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK168161|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK150852|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK077410|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)
mm9_v1_chr5_-_35002717_35002796	0.701984	CTCF.p2	BC024998|Nop14|75416|NOP14 nucleolar protein homolog (yeast)	AK161728|Nop14|75416|NOP14 nucleolar protein homolog (yeast)	BC043043|Nop14|75416|NOP14 nucleolar protein homolog (yeast)	AK148605|Nop14|75416|NOP14 nucleolar protein homolog (yeast)	AK011648|Nop14|75416|NOP14 nucleolar protein homolog (yeast)	AK078605|Nop14|75416|NOP14 nucleolar protein homolog (yeast)	AK079609|Nop14|75416|NOP14 nucleolar protein homolog (yeast)	NM_029278|Nop14|75416|NOP14 nucleolar protein homolog (yeast)
mm9_v1_chr1_-_157883424_157883442	0.693302	CTCF.p2	BC010841|Tor1aip1|208263|torsin A interacting protein 1
mm9_v1_chr8_+_116963542_116963590	0.68	CTCF.p2	NM_019573|Wwox|80707|WW domain-containing oxidoreductase
mm9_v1_chr19_-_3912772_3912783	0.678685	CTCF.p2	AK135069|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8
mm9_v1_chr14_-_64147067_64147107	0.674311	CTCF.p2	AF073881|Mtmr9|210376|myotubularin related protein 9
mm9_v1_chr8_+_34710323_34710460	0.674229	CTCF.p2	BC049594|Ppp2cb|19053|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	BC019161|Ppp2cb|19053|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	Z67746|Ppp2cb|19053|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	AK090311|Ppp2cb|19053|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform
mm9_v1_chr1_-_135506798_135506877	0.671188	CTCF.p2	BC055765|Snrpe|20643|small nuclear ribonucleoprotein E	BC051207|Snrpe|20643|small nuclear ribonucleoprotein E	BC008262|Snrpe|20643|small nuclear ribonucleoprotein E	AK019462|Snrpe|20643|small nuclear ribonucleoprotein E	NM_009227|Snrpe|20643|small nuclear ribonucleoprotein E
mm9_v1_chr17_-_25073897_25073943	0.666527	CTCF.p2	BC068312|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AB005662|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AF262046|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AF178637|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	BC065105|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163447|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163448|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163449|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163450|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163451|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163453|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_013931|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3
mm9_v1_chr6_+_85865746_85865786	0.648887	CTCF.p2	BC024858|Tprkb|69786|Tp53rk binding protein	AK188541|Tprkb|69786|Tp53rk binding protein
mm9_v1_chr4_+_151699954_151699986	0.64815	CTCF.p2	BC007139|Rpl22|19934|ribosomal protein L22	AK003022|Rpl22|19934|ribosomal protein L22	AK169731|Rpl22|19934|ribosomal protein L22	AK009094|Rpl22|19934|ribosomal protein L22	D17653|Rpl22|19934|ribosomal protein L22	AK168353|Rpl22|19934|ribosomal protein L22	AK169078|Rpl22|19934|ribosomal protein L22	BC021344|Rpl22|19934|ribosomal protein L22	NM_009079|Rpl22|19934|ribosomal protein L22
mm9_v1_chr18_-_43552694_43552984	0.644997	CTCF.p2	BC023003|Dpysl3|22240|dihydropyrimidinase-like 3	NM_009468|Dpysl3|22240|dihydropyrimidinase-like 3	X87817|Dpysl3|22240|dihydropyrimidinase-like 3
mm9_v1_chr17_+_75864877_75864952	0.644977	CTCF.p2	NM_207246|Rasgrp3|240168|RAS, guanyl releasing protein 3	BC066127|Rasgrp3|240168|RAS, guanyl releasing protein 3
mm9_v1_chr11_+_49057692_49057775	0.644046	CTCF.p2	NM_001110148|Mgat1|17308|mannoside acetylglucosaminyltransferase 1	NM_010794|Mgat1|17308|mannoside acetylglucosaminyltransferase 1	BC031752|Mgat1|17308|mannoside acetylglucosaminyltransferase 1
mm9_v1_chr1_-_157883515_157883643	0.640551	CTCF.p2	AK149727|Tor1aip1|208263|torsin A interacting protein 1	AB251963|Tor1aip1|208263|torsin A interacting protein 1	NM_001160018|Tor1aip1|208263|torsin A interacting protein 1	NM_144791|Tor1aip1|208263|torsin A interacting protein 1
mm9_v1_chr2_-_177813129_177813180	0.638536	CTCF.p2	NM_001162922|Zfp931|353208|zinc finger protein 931	AK049261|Zfp931|353208|zinc finger protein 931	AK012776|Zfp931|353208|zinc finger protein 931	BC096373|Zfp931|353208|zinc finger protein 931
mm9_v1_chr1_-_135506760_135506767	0.633197	CTCF.p2	X65704|Snrpe|20643|small nuclear ribonucleoprotein E
mm9_v1_chr3_-_96398053_96398112	0.631245	CTCF.p2	BC027083|Polr3gl|69870|polymerase (RNA) III (DNA directed) polypeptide G like	AK008069|Polr3gl|69870|polymerase (RNA) III (DNA directed) polypeptide G like	AK168976|Polr3gl|69870|polymerase (RNA) III (DNA directed) polypeptide G like	NM_027241|Polr3gl|69870|polymerase (RNA) III (DNA directed) polypeptide G like
mm9_v1_chr2_+_31150247_31150361	0.627759	CTCF.p2	AK042865|Ncs1|14299|neuronal calcium sensor 1
mm9_v1_chr5_-_123582637_123582709	0.627117	CTCF.p2	NM_175092|Rhof|23912|ras homolog gene family, member f
mm9_v1_chr6_+_120786323_120786357	0.616373	CTCF.p2	AK195055|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	BC027307|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)
mm9_v1_chr2_+_25284190_25284289	0.615406	CTCF.p2	AK169438|Abca2|11305|ATP-binding cassette, sub-family A (ABC1), member 2	NM_007379|Abca2|11305|ATP-binding cassette, sub-family A (ABC1), member 2	X75927|Abca2|11305|ATP-binding cassette, sub-family A (ABC1), member 2
mm9_v1_chrX_-_70704286_70704406	0.612387	CTCF.p2	AK050729|Haus7|73738|HAUS augmin-like complex, subunit 7	BC025464|Haus7|73738|HAUS augmin-like complex, subunit 7	AY029337|Haus7|73738|HAUS augmin-like complex, subunit 7	NM_028633|Haus7|73738|HAUS augmin-like complex, subunit 7	NM_207104|Haus7|73738|HAUS augmin-like complex, subunit 7
mm9_v1_chr1_+_72353980_72354076	0.612374	CTCF.p2	AK081633|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	NM_009533|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK089944|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK165470|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK084263|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	BC051660|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5
mm9_v1_chr9_-_43921555_43921605	0.611754	CTCF.p2	BC111036|Rnf26|213211|ring finger protein 26	AK157821|Rnf26|213211|ring finger protein 26	AK085078|Rnf26|213211|ring finger protein 26	AK033164|Rnf26|213211|ring finger protein 26
mm9_v1_chr11_+_79997341_79997544	0.610327	CTCF.p2	AK010429|Rnf135|71956|ring finger protein 135	NM_028019|Rnf135|71956|ring finger protein 135	AK150921|Rnf135|71956|ring finger protein 135	BC132307|Rnf135|71956|ring finger protein 135	BC138303|Rnf135|71956|ring finger protein 135	BC145236|Rnf135|71956|ring finger protein 135	AK152096|Rnf135|71956|ring finger protein 135	BC096385|Rnf135|71956|ring finger protein 135	AK002781|Rnf135|71956|ring finger protein 135
mm9_v1_chr2_-_66094647_66094696	0.607143	CTCF.p2	BC151199|Ttc21b|73668|tetratricopeptide repeat domain 21B	BC172115|Ttc21b|73668|tetratricopeptide repeat domain 21B	DQ011164|Ttc21b|73668|tetratricopeptide repeat domain 21B	NM_001047604|Ttc21b|73668|tetratricopeptide repeat domain 21B
mm9_v1_chr8_-_108089811_108089973	0.601002	CTCF.p2	U21549|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AB088408|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	U13840|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	BC011075|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK171515|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK083372|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	NM_013477|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK133921|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1
mm9_v1_chr15_+_100959342_100959354	0.596462	CTCF.p2	BC015083|Acvrl1|11482|activin A receptor, type II-like 1	BC014291|Acvrl1|11482|activin A receptor, type II-like 1
mm9_v1_chr17_+_43153516_43153557	0.595902	CTCF.p2	AK143175|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21	AK033529|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21	AK134704|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21	BC016420|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21
mm9_v1_chr4_+_124762378_124762419	0.594022	CTCF.p2	NM_027310|Meaf6|70088|MYST/Esa1-associated factor 6	AK009177|Meaf6|70088|MYST/Esa1-associated factor 6	AK012867|Meaf6|70088|MYST/Esa1-associated factor 6	BC108404|Meaf6|70088|MYST/Esa1-associated factor 6	BC061024|Meaf6|70088|MYST/Esa1-associated factor 6
mm9_v1_chr12_-_17183693_17183693	0.583136	CTCF.p2	NM_201531|Kcnf1|382571|potassium voltage-gated channel, subfamily F, member 1
mm9_v1_chr9_+_108362848_108362907	0.582305	CTCF.p2	NM_133744|Ccdc71|72454|coiled-coil domain containing 71	AK085544|Ccdc71|72454|coiled-coil domain containing 71	AK079333|Ccdc71|72454|coiled-coil domain containing 71	AK011229|Ccdc71|72454|coiled-coil domain containing 71	AK044601|Ccdc71|72454|coiled-coil domain containing 71	AK086560|Ccdc71|72454|coiled-coil domain containing 71	AK149878|Ccdc71|72454|coiled-coil domain containing 71	AK136982|Ccdc71|72454|coiled-coil domain containing 71	BC018518|Ccdc71|72454|coiled-coil domain containing 71
mm9_v1_chr9_-_64101138_64101232	0.581734	CTCF.p2	L02526|Map2k1|26395|mitogen-activated protein kinase kinase 1	BC054754|Map2k1|26395|mitogen-activated protein kinase kinase 1	BC051137|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr8_-_87461220_87461246	0.580624	CTCF.p2	AF077818|Mast1|56527|microtubule associated serine/threonine kinase 1
mm9_v1_chr11_-_82704059_82704118	0.578512	CTCF.p2	AK036272|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB007040|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052828|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052829|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052830|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052831|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052832|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052833|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052834|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	BC049136|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AK147759|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AF034955|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	EU627687|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	EU627688|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	Y15570|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AK017835|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AK138553|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	NM_011235|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)
mm9_v1_chr5_+_75552144_75552190	0.577755	CTCF.p2	AK163952|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	BC053036|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	NM_001083316|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide
mm9_v1_chr1_+_159342482_159342517	0.57575	CTCF.p2	BC055845|2810025M15Rik|69953|RIKEN cDNA 2810025M15 gene
mm9_v1_chr13_-_54867800_54867840	0.575057	CTCF.p2	BC019409|Sncb|104069|synuclein, beta	NM_033610|Sncb|104069|synuclein, beta
mm9_v1_chr15_-_76437917_76438021	0.569257	CTCF.p2	BC049941|Cpsf1|94230|cleavage and polyadenylation specific factor 1	AK155806|Cpsf1|94230|cleavage and polyadenylation specific factor 1	AK155648|Cpsf1|94230|cleavage and polyadenylation specific factor 1	AF322193|Cpsf1|94230|cleavage and polyadenylation specific factor 1	BC056388|Cpsf1|94230|cleavage and polyadenylation specific factor 1	NM_001164173|Cpsf1|94230|cleavage and polyadenylation specific factor 1	NM_053193|Cpsf1|94230|cleavage and polyadenylation specific factor 1
mm9_v1_chr2_-_165981085_165981115	0.566963	CTCF.p2	AK165183|Sulf2|72043|sulfatase 2	AK028874|Sulf2|72043|sulfatase 2	AK008108|Sulf2|72043|sulfatase 2	AK036685|Sulf2|72043|sulfatase 2
mm9_v1_chr6_+_124520447_124520453	0.565927	CTCF.p2	AF459018|C1rb|667277|complement component 1, r subcomponent B	NM_001113356|C1rb|667277|complement component 1, r subcomponent B
mm9_v1_chr2_-_75542552_75542719	0.561267	CTCF.p2	BC003340|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK144247|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK029360|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK142347|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	BC026943|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	NM_010902|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	U20532|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2
mm9_v1_chr1_+_9535477_9535591	0.560017	CTCF.p2	AK142041|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	NM_021511|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	BC003481|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AB041589|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AK122207|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	BC055925|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AK017683|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AK010178|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AK019913|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AK019257|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)
mm9_v1_chr1_-_137029151_137029151	0.559184	CTCF.p2	AK156112|Ptprv|13924|protein tyrosine phosphatase, receptor type, V	NM_007955|Ptprv|13924|protein tyrosine phosphatase, receptor type, V
mm9_v1_chr2_-_93662687_93662734	0.554303	CTCF.p2	BC006597|Ext2|14043|exostoses (multiple) 2	U67837|Ext2|14043|exostoses (multiple) 2	U72141|Ext2|14043|exostoses (multiple) 2	AK152265|Ext2|14043|exostoses (multiple) 2	AK152840|Ext2|14043|exostoses (multiple) 2	AK082572|Ext2|14043|exostoses (multiple) 2	AK084772|Ext2|14043|exostoses (multiple) 2	AK164342|Ext2|14043|exostoses (multiple) 2	AK148090|Ext2|14043|exostoses (multiple) 2	AK150155|Ext2|14043|exostoses (multiple) 2	NM_010163|Ext2|14043|exostoses (multiple) 2
mm9_v1_chr7_-_129245303_129245368	0.542564	CTCF.p2	AK167447|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK089103|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	BC092379|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	BC060951|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK018717|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK008788|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK009698|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK010307|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK011302|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK018688|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK151719|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK152995|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	NM_028177|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1
mm9_v1_chr11_+_119129280_119129348	0.542484	CTCF.p2	NM_001159324|Gaa|14387|glucosidase, alpha, acid	AK146538|Gaa|14387|glucosidase, alpha, acid	NM_008064|Gaa|14387|glucosidase, alpha, acid	U49351|Gaa|14387|glucosidase, alpha, acid	AK052211|Gaa|14387|glucosidase, alpha, acid	AK054057|Gaa|14387|glucosidase, alpha, acid	AK141546|Gaa|14387|glucosidase, alpha, acid	AK088481|Gaa|14387|glucosidase, alpha, acid
mm9_v1_chr8_+_34807688_34807718	0.538484	CTCF.p2	AK027984|Gsr|14782|glutathione reductase
mm9_v1_chr9_+_103207488_103207656	0.537887	CTCF.p2	AK085031|Topbp1|235559|topoisomerase (DNA) II binding protein 1	AK129104|Topbp1|235559|topoisomerase (DNA) II binding protein 1	AK084654|Topbp1|235559|topoisomerase (DNA) II binding protein 1	AK084869|Topbp1|235559|topoisomerase (DNA) II binding protein 1	BC049797|Topbp1|235559|topoisomerase (DNA) II binding protein 1	NM_176979|Topbp1|235559|topoisomerase (DNA) II binding protein 1
mm9_v1_chr1_+_59969845_59969868	0.533346	CTCF.p2	AK154812|Fam117b|72750|family with sequence similarity 117, member B	NM_001037725|Fam117b|72750|family with sequence similarity 117, member B
mm9_v1_chr19_-_3912710_3912721	0.533166	CTCF.p2	AK153182|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8	NM_144870|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8
mm9_v1_chr6_+_54766562_54766917	0.532048	CTCF.p2	AF513708|Znrf2|387524|zinc and ring finger 2	NM_199143|Znrf2|387524|zinc and ring finger 2	BC104316|Znrf2|387524|zinc and ring finger 2	BC104317|Znrf2|387524|zinc and ring finger 2	BC125242|Znrf2|387524|zinc and ring finger 2
mm9_v1_chr1_-_162142846_162143024	0.53178	CTCF.p2	U97327|Cacybp|12301|calcyclin binding protein	AK089043|Cacybp|12301|calcyclin binding protein	AK177869|Cacybp|12301|calcyclin binding protein	BC025948|Cacybp|12301|calcyclin binding protein	NM_009786|Cacybp|12301|calcyclin binding protein	AK013924|Cacybp|12301|calcyclin binding protein	AK145013|Cacybp|12301|calcyclin binding protein
mm9_v1_chr2_-_119916315_119916503	0.530805	CTCF.p2	AK008769|Ehd4|98878|EH-domain containing 4	AK076544|Ehd4|98878|EH-domain containing 4
mm9_v1_chr17_+_29627950_29627989	0.52975	CTCF.p2	BC053019|Pim1|18712|proviral integration site 1	BC055316|Pim1|18712|proviral integration site 1	NM_008842|Pim1|18712|proviral integration site 1
mm9_v1_chr3_+_154259658_154259674	0.529501	CTCF.p2	AK133820|Cryz|12972|crystallin, zeta
mm9_v1_chr2_+_150735306_150735352	0.528747	CTCF.p2	NM_001163476|Gins1|69270|GINS complex subunit 1 (Psf1 homolog)	NM_027014|Gins1|69270|GINS complex subunit 1 (Psf1 homolog)	AK013116|Gins1|69270|GINS complex subunit 1 (Psf1 homolog)	BC027537|Gins1|69270|GINS complex subunit 1 (Psf1 homolog)
mm9_v1_chr13_-_8870231_8870293	0.528622	CTCF.p2	AK129254|Wdr37|207615|WD repeat domain 37	AK032582|Wdr37|207615|WD repeat domain 37	AK146209|Wdr37|207615|WD repeat domain 37	AK014128|Wdr37|207615|WD repeat domain 37	AK044740|Wdr37|207615|WD repeat domain 37	AK036203|Wdr37|207615|WD repeat domain 37	NM_001039389|Wdr37|207615|WD repeat domain 37	NM_172445|Wdr37|207615|WD repeat domain 37
mm9_v1_chr4_+_45355039_45355115	0.528381	CTCF.p2	AK157345|Dcaf10|242418|DDB1 and CUL4 associated factor 10	AK045241|Dcaf10|242418|DDB1 and CUL4 associated factor 10	BC085101|Dcaf10|242418|DDB1 and CUL4 associated factor 10
mm9_v1_chr11_-_68821930_68821976	0.527731	CTCF.p2	AK139115|Pfas|237823|phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)	NM_001159519|Pfas|237823|phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)
mm9_v1_chr8_+_72663589_72663631	0.520275	CTCF.p2	AK161437|2310045N01Rik|72368|RIKEN cDNA 2310045N01 gene	BC048525|2310045N01Rik|72368|RIKEN cDNA 2310045N01 gene	NM_001145552|2310045N01Rik|72368|RIKEN cDNA 2310045N01 gene	BC065393|2310045N01Rik|72368|RIKEN cDNA 2310045N01 gene	AK009829|2310045N01Rik|72368|RIKEN cDNA 2310045N01 gene
mm9_v1_chr2_+_142888774_142888806	0.516515	CTCF.p2	AK011274|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	BC026794|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	AK012944|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	AK013871|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	NM_021335|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	AK005107|Snrpb2|20639|U2 small nuclear ribonucleoprotein B
mm9_v1_chr5_+_23900197_23900242	0.508414	CTCF.p2	AK014688|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK076315|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK049152|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK166704|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK170334|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK014319|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK030624|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK038760|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8
mm9_v1_chr17_+_43938905_43938991	0.501636	CTCF.p2	AK136805|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr7_+_28271928_28272067	0.499717	CTCF.p2	AF366401|Sertad1|55942|SERTA domain containing 1	AK002324|Sertad1|55942|SERTA domain containing 1	AK004022|Sertad1|55942|SERTA domain containing 1	AK008303|Sertad1|55942|SERTA domain containing 1	NM_018820|Sertad1|55942|SERTA domain containing 1	BC016077|Sertad1|55942|SERTA domain containing 1	AF218291|Sertad1|55942|SERTA domain containing 1	AF366400|Sertad1|55942|SERTA domain containing 1
mm9_v1_chr10_-_39862004_39862094	0.499379	CTCF.p2	AK151636|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK036743|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK144135|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK151290|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK151704|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK157355|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK165240|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK165579|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	NM_001114332|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	NM_028247|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK050229|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK011813|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10
mm9_v1_chr2_+_175100546_175100634	0.493966	CTCF.p2	BC099593|Gm14420|628308|predicted gene 14420	BC086907|Gm14288|13999|predicted gene 14288	NM_001033123|Gm14288|13999|predicted gene 14288	BC032262|Gm14288|13999|predicted gene 14288
mm9_v1_chr2_-_176329852_176329940	0.490383	CTCF.p2	BC032262|Gm14288|13999|predicted gene 14288	BC086907|Gm14288|13999|predicted gene 14288	NM_001033123|Gm14288|13999|predicted gene 14288	BC099593|Gm14420|628308|predicted gene 14420
mm9_v1_chr16_-_16359122_16359124	0.489225	CTCF.p2	NM_001025947|Dnm1l|74006|dynamin 1-like	NM_152816|Dnm1l|74006|dynamin 1-like
mm9_v1_chr14_-_60012348_60012348	0.484781	CTCF.p2	NM_001164289|Gm6907|628705|predicted gene 6907
mm9_v1_chr4_-_123427465_123427587	0.483691	CTCF.p2	AK006378|Akirin1|68050|akirin 1	AK078055|Akirin1|68050|akirin 1	AB041594|Akirin1|68050|akirin 1	AK160087|Akirin1|68050|akirin 1	AK168201|Akirin1|68050|akirin 1	AK168214|Akirin1|68050|akirin 1	AK146017|Akirin1|68050|akirin 1	AK168530|Akirin1|68050|akirin 1	AK159632|Akirin1|68050|akirin 1	NM_023423|Akirin1|68050|akirin 1	BC003291|Akirin1|68050|akirin 1
mm9_v1_chr15_+_102038697_102038697	0.481571	CTCF.p2	BC030410|Zfp740|68744|zinc finger protein 740	NM_153194|Zfp740|68744|zinc finger protein 740
mm9_v1_chr8_+_18595130_18595172	0.481031	CTCF.p2	AK083572|Mcph1|244329|microcephaly, primary autosomal recessive 1	AK138858|Mcph1|244329|microcephaly, primary autosomal recessive 1	AK042026|Mcph1|244329|microcephaly, primary autosomal recessive 1	BC056924|Mcph1|244329|microcephaly, primary autosomal recessive 1	NM_173189|Mcph1|244329|microcephaly, primary autosomal recessive 1
mm9_v1_chr9_+_106379599_106379678	0.479998	CTCF.p2	AK076113|Rrp9|27966|RRP9, small subunit (SSU) processome component, homolog (yeast)	BC014703|Rrp9|27966|RRP9, small subunit (SSU) processome component, homolog (yeast)	NM_145620|Rrp9|27966|RRP9, small subunit (SSU) processome component, homolog (yeast)	AK156199|Rrp9|27966|RRP9, small subunit (SSU) processome component, homolog (yeast)	AF368232|Rrp9|27966|RRP9, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr13_+_119503505_119503505	0.477896	CTCF.p2	AK045267|Fgf10|14165|fibroblast growth factor 10	NM_008002|Fgf10|14165|fibroblast growth factor 10
mm9_v1_chr16_+_96366980_96367038	0.468873	CTCF.p2	AK084688|Wrb|71446|tryptophan rich basic protein	AK172079|Wrb|71446|tryptophan rich basic protein	BC031769|Wrb|71446|tryptophan rich basic protein	NM_207301|Wrb|71446|tryptophan rich basic protein	AK021091|Wrb|71446|tryptophan rich basic protein
mm9_v1_chr11_-_102308966_102308985	0.467888	CTCF.p2	NM_199200|Fam171a2|217219|family with sequence similarity 171, member A2
mm9_v1_chr7_+_135380798_135380870	0.465422	CTCF.p2	AK131111|Armc5|233912|armadillo repeat containing 5	NM_146205|Armc5|233912|armadillo repeat containing 5
mm9_v1_chr2_+_174109820_174109853	0.465096	CTCF.p2	AK039035|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_019690|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_022000|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AF107848|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK161197|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AF175305|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AJ010163|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr10_+_40069255_40069363	0.462641	CTCF.p2	AK052818|Cdk19|78334|cyclin-dependent kinase 19	AK147340|Cdk19|78334|cyclin-dependent kinase 19	BC062100|Cdk19|78334|cyclin-dependent kinase 19	BC048908|Cdk19|78334|cyclin-dependent kinase 19
mm9_v1_chrX_+_71516128_71516339	0.461158	CTCF.p2	NM_052835|Rpl10|110954|ribosomal protein 10	AK146217|Rpl10|110954|ribosomal protein 10	AK011022|Rpl10|110954|ribosomal protein 10	AK088777|Rpl10|110954|ribosomal protein 10	AK144831|Rpl10|110954|ribosomal protein 10	AK151416|Rpl10|110954|ribosomal protein 10	AK151655|Rpl10|110954|ribosomal protein 10	AK152123|Rpl10|110954|ribosomal protein 10	AK152854|Rpl10|110954|ribosomal protein 10	AK153345|Rpl10|110954|ribosomal protein 10	AK160618|Rpl10|110954|ribosomal protein 10	AK167966|Rpl10|110954|ribosomal protein 10	AK168854|Rpl10|110954|ribosomal protein 10	BC086917|Rpl10|110954|ribosomal protein 10	M93980|Rpl10|110954|ribosomal protein 10	AK014054|Rpl10|110954|ribosomal protein 10	AK151736|Rpl10|110954|ribosomal protein 10	AK166610|Rpl10|110954|ribosomal protein 10	AK168250|Rpl10|110954|ribosomal protein 10	AK012561|Rpl10|110954|ribosomal protein 10	AK167239|Rpl10|110954|ribosomal protein 10	BC092383|Rpl10|110954|ribosomal protein 10	BC098204|Rpl10|110954|ribosomal protein 10	X75312|Rpl10|110954|ribosomal protein 10	BC048872|Rpl10|110954|ribosomal protein 10	BC099437|Rpl10|110954|ribosomal protein 10	BC024901|Rpl10|110954|ribosomal protein 10	BC082293|Rpl10|110954|ribosomal protein 10	BC083327|Rpl10|110954|ribosomal protein 10	BC006068|Rpl10|110954|ribosomal protein 10
mm9_v1_chr1_+_145624384_145624593	0.455814	CTCF.p2	NM_001159866|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	NM_019562|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	AK017925|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	AK011117|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	BC006891|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	AF148447|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	AF175903|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	AK007860|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5
mm9_v1_chr2_-_75542535_75542545	0.454594	CTCF.p2	BC057948|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2
mm9_v1_chr10_+_40069113_40069226	0.444791	CTCF.p2	AK122421|Cdk19|78334|cyclin-dependent kinase 19	NM_001168304|Cdk19|78334|cyclin-dependent kinase 19	NM_198164|Cdk19|78334|cyclin-dependent kinase 19	AK053651|Cdk19|78334|cyclin-dependent kinase 19	BC137614|Cdk19|78334|cyclin-dependent kinase 19	BC144782|Cdk19|78334|cyclin-dependent kinase 19	BC080280|Cdk19|78334|cyclin-dependent kinase 19
mm9_v1_chr2_+_144425688_144425695	0.440888	CTCF.p2	NM_025314|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)
mm9_v1_chr4_+_43455122_43455148	0.438032	CTCF.p2	BC099699|Tesk1|21754|testis specific protein kinase 1	NM_011571|Tesk1|21754|testis specific protein kinase 1
mm9_v1_chr15_+_100959358_100959377	0.437444	CTCF.p2	Z31664|Acvrl1|11482|activin A receptor, type II-like 1
mm9_v1_chr2_+_172266042_172266209	0.433501	CTCF.p2	AK053258|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK010321|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK077823|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	NM_025542|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK009901|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC049072|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK167287|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK028792|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC004803|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK219307|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK209674|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK169588|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK170141|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK153121|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC096692|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC116442|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC116443|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC127166|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene
mm9_v1_chr14_-_52634206_52634316	0.43332	CTCF.p2	AK053445|Zfp219|69890|zinc finger protein 219
mm9_v1_chr1_+_153418502_153418564	0.431763	CTCF.p2	NM_022018|Fam129a|63913|family with sequence similarity 129, member A
mm9_v1_chr2_-_53937785_53937964	0.429617	CTCF.p2	BC030065|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	AK014769|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	AB043586|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	AK010465|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	NM_023396|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate
mm9_v1_chr5_+_3543815_3543891	0.429396	CTCF.p2	AK008115|Fam133b|68152|family with sequence similarity 133, member B	AK019188|Fam133b|68152|family with sequence similarity 133, member B	NM_001042501|Fam133b|68152|family with sequence similarity 133, member B	AK020011|Fam133b|68152|family with sequence similarity 133, member B	BC147310|Fam133b|68152|family with sequence similarity 133, member B	BC147311|Fam133b|68152|family with sequence similarity 133, member B	BC172033|Fam133b|68152|family with sequence similarity 133, member B	BC027051|Fam133b|68152|family with sequence similarity 133, member B	AK161505|Fam133b|68152|family with sequence similarity 133, member B
mm9_v1_chr2_-_154198449_154198468	0.42561	CTCF.p2	AK010081|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1	AK010097|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1	NM_025876|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1	AK088517|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1	AK136570|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1
mm9_v1_chr1_+_34592492_34592534	0.415377	CTCF.p2	NM_007685|Cfc1|12627|cripto, FRL-1, cryptic family 1	U57720|Cfc1|12627|cripto, FRL-1, cryptic family 1	BC100705|Cfc1|12627|cripto, FRL-1, cryptic family 1	BC100706|Cfc1|12627|cripto, FRL-1, cryptic family 1	BC100708|Cfc1|12627|cripto, FRL-1, cryptic family 1	BC100711|Cfc1|12627|cripto, FRL-1, cryptic family 1
mm9_v1_chr4_-_124359695_124359773	0.412253	CTCF.p2	AK008801|Utp11l|67205|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)
mm9_v1_chr9_-_50336742_50336819	0.412239	CTCF.p2	AF043225|Pts|19286|6-pyruvoyl-tetrahydropterin synthase	BC029013|Pts|19286|6-pyruvoyl-tetrahydropterin synthase	NM_011220|Pts|19286|6-pyruvoyl-tetrahydropterin synthase	AK002614|Pts|19286|6-pyruvoyl-tetrahydropterin synthase	AK146987|Pts|19286|6-pyruvoyl-tetrahydropterin synthase	AK153959|Pts|19286|6-pyruvoyl-tetrahydropterin synthase
mm9_v1_chr6_+_50060187_50060381	0.409366	CTCF.p2	AK144434|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	NM_001164733|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	NM_001164734|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	NM_019939|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	AF199009|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	AF199010|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	BC069908|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	BC042868|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	BC046421|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	BC106140|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	AF161181|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	BC138666|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	BC145363|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	BC145364|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
mm9_v1_chr9_-_53475167_53475249	0.408277	CTCF.p2	AK014894|Cul5|75717|cullin 5	BC037054|Cul5|75717|cullin 5
mm9_v1_chr2_+_150574777_150574886	0.407856	CTCF.p2	AK030789|Entpd6|12497|ectonucleoside triphosphate diphosphohydrolase 6	NM_172117|Entpd6|12497|ectonucleoside triphosphate diphosphohydrolase 6	BC038126|Entpd6|12497|ectonucleoside triphosphate diphosphohydrolase 6	BC028318|Entpd6|12497|ectonucleoside triphosphate diphosphohydrolase 6	AK156685|Entpd6|12497|ectonucleoside triphosphate diphosphohydrolase 6
mm9_v1_chr7_-_133512962_133513083	0.406615	CTCF.p2	AK088763|Lat|16797|linker for activation of T cells	BC052340|Lat|16797|linker for activation of T cells	AK134003|Lat|16797|linker for activation of T cells	BC013337|Lat|16797|linker for activation of T cells	AF036907|Lat|16797|linker for activation of T cells	NM_010689|Lat|16797|linker for activation of T cells
mm9_v1_chr15_+_82176434_82176522	0.40651	CTCF.p2	AK151325|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	AK152795|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	BC028457|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	NM_026914|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	AK005345|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	AK170899|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	BC092006|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene
mm9_v1_chr15_-_36426471_36426537	0.406437	CTCF.p2	AK088304|Ankrd46|68839|ankyrin repeat domain 46	AK148049|Ankrd46|68839|ankyrin repeat domain 46	BC094595|Ankrd46|68839|ankyrin repeat domain 46	BC086659|Ankrd46|68839|ankyrin repeat domain 46
mm9_v1_chr9_+_110760470_110760484	0.39877	CTCF.p2	AK045168|Prss50|235631|protease, serine, 50	NM_146227|Prss50|235631|protease, serine, 50	BC150686|Prss50|235631|protease, serine, 50	AF481144|Prss50|235631|protease, serine, 50
mm9_v1_chr7_+_111392968_111392986	0.398042	CTCF.p2	NM_030684|Trim34a|94094|tripartite motif-containing 34A	AK089187|Trim34a|94094|tripartite motif-containing 34A
mm9_v1_chr8_-_106966899_106966946	0.39723	CTCF.p2	BC058645|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK050575|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	NM_001013380|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2
mm9_v1_chr9_-_53475610_53475616	0.39512	CTCF.p2	AK031955|Cul5|75717|cullin 5	NM_001161618|Cul5|75717|cullin 5	NM_027807|Cul5|75717|cullin 5
mm9_v1_chr7_-_52347489_52347600	0.392976	CTCF.p2	BC092069|Rcn3|52377|reticulocalbin 3, EF-hand calcium binding domain	AK077943|Rcn3|52377|reticulocalbin 3, EF-hand calcium binding domain	AK082762|Rcn3|52377|reticulocalbin 3, EF-hand calcium binding domain	AK086705|Rcn3|52377|reticulocalbin 3, EF-hand calcium binding domain	AK132143|Rcn3|52377|reticulocalbin 3, EF-hand calcium binding domain	BC025602|Rcn3|52377|reticulocalbin 3, EF-hand calcium binding domain	BC055903|Rcn3|52377|reticulocalbin 3, EF-hand calcium binding domain	NM_026555|Rcn3|52377|reticulocalbin 3, EF-hand calcium binding domain
mm9_v1_chr7_+_109044853_109044944	0.389969	CTCF.p2	AK139635|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	NM_027532|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	AK135201|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	AK014309|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	BC080730|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene
mm9_v1_chr7_+_54110791_54110836	0.389169	CTCF.p2	
mm9_v1_chr3_+_134944184_134944206	0.387622	CTCF.p2	NM_001172055|Bdh2|69772|3-hydroxybutyrate dehydrogenase, type 2	NM_027208|Bdh2|69772|3-hydroxybutyrate dehydrogenase, type 2	BC021461|Bdh2|69772|3-hydroxybutyrate dehydrogenase, type 2
mm9_v1_chr11_-_35647952_35648029	0.387525	CTCF.p2	BC020132|Rars|104458|arginyl-tRNA synthetase	AK076160|Rars|104458|arginyl-tRNA synthetase	AK149856|Rars|104458|arginyl-tRNA synthetase	AK152108|Rars|104458|arginyl-tRNA synthetase	AK160216|Rars|104458|arginyl-tRNA synthetase	AK166097|Rars|104458|arginyl-tRNA synthetase	AK168194|Rars|104458|arginyl-tRNA synthetase	AK011383|Rars|104458|arginyl-tRNA synthetase	NM_025936|Rars|104458|arginyl-tRNA synthetase
mm9_v1_chr18_+_37581071_37581102	0.387294	CTCF.p2	AK078189|Pcdhb11|93882|protocadherin beta 11	NM_053136|Pcdhb11|93882|protocadherin beta 11	AK160803|Pcdhb11|93882|protocadherin beta 11
mm9_v1_chr6_-_90666474_90666531	0.384005	CTCF.p2	NM_001134383|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr11_+_43247252_43247280	0.383374	CTCF.p2	BC082780|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	BC025870|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	AK046262|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	AK029117|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	AK049178|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	BC060954|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)
mm9_v1_chr1_-_95698465_95698512	0.383321	CTCF.p2	AK088416|Dtymk|21915|deoxythymidylate kinase	AK019445|Dtymk|21915|deoxythymidylate kinase	AK160747|Dtymk|21915|deoxythymidylate kinase	BC069902|Dtymk|21915|deoxythymidylate kinase	AK009220|Dtymk|21915|deoxythymidylate kinase	AK019288|Dtymk|21915|deoxythymidylate kinase	NM_001105667|Dtymk|21915|deoxythymidylate kinase	NM_023136|Dtymk|21915|deoxythymidylate kinase
mm9_v1_chr15_+_74551611_74551685	0.378334	CTCF.p2	BC047266|4930572J05Rik|223626|RIKEN cDNA 4930572J05 gene	NM_198607|4930572J05Rik|223626|RIKEN cDNA 4930572J05 gene
mm9_v1_chr2_-_30033944_30034014	0.377977	CTCF.p2	AK044983|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK036945|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK147162|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK046148|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	NM_172660|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed
mm9_v1_chr5_+_114764949_114764949	0.376494	CTCF.p2	NM_001164573|Myo1h|231646|myosin 1H
mm9_v1_chr8_+_73929908_73929953	0.376058	CTCF.p2	NM_172756|Ankle1|234396|ankyrin repeat and LEM domain containing 1	AK080768|Ankle1|234396|ankyrin repeat and LEM domain containing 1	AK087444|Ankle1|234396|ankyrin repeat and LEM domain containing 1	AK049395|Ankle1|234396|ankyrin repeat and LEM domain containing 1	AK078830|Ankle1|234396|ankyrin repeat and LEM domain containing 1	BC030436|Ankle1|234396|ankyrin repeat and LEM domain containing 1	AK083552|Ankle1|234396|ankyrin repeat and LEM domain containing 1	EU184014|Ankle1|234396|ankyrin repeat and LEM domain containing 1	BC094316|Ankle1|234396|ankyrin repeat and LEM domain containing 1
mm9_v1_chr1_+_152240389_152240449	0.374983	CTCF.p2	AK132381|Tpr|108989|translocated promoter region	AK088078|Tpr|108989|translocated promoter region	AK157716|Tpr|108989|translocated promoter region
mm9_v1_chr18_-_81130721_81130824	0.370657	CTCF.p2	BC057000|Atp9b|50771|ATPase, class II, type 9B	BC079626|Atp9b|50771|ATPase, class II, type 9B	AK044331|Atp9b|50771|ATPase, class II, type 9B	AK166562|Atp9b|50771|ATPase, class II, type 9B	NM_015805|Atp9b|50771|ATPase, class II, type 9B
mm9_v1_chr8_-_127472730_127472856	0.368164	CTCF.p2	AJ310546|Egln1|112405|EGL nine homolog 1 (C. elegans)
mm9_v1_chr7_-_27944870_27944933	0.355351	CTCF.p2	AK179611|Egln2|112406|EGL nine homolog 2 (C. elegans)
mm9_v1_chr2_+_172073991_172073998	0.353746	CTCF.p2	AK038677|Mc3r|17201|melanocortin 3 receptor	NM_008561|Mc3r|17201|melanocortin 3 receptor	BC103669|Mc3r|17201|melanocortin 3 receptor	BC104730|Mc3r|17201|melanocortin 3 receptor	BC105667|Mc3r|17201|melanocortin 3 receptor	BC105668|Mc3r|17201|melanocortin 3 receptor
mm9_v1_chr5_-_144493077_144493148	0.351772	CTCF.p2	NM_029749|Usp42|76800|ubiquitin specific peptidase 42
mm9_v1_chr14_+_56097682_56097776	0.34751	CTCF.p2	AB045132|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	AK018788|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	AK146988|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	BC003484|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4
mm9_v1_chr5_-_137043082_137043316	0.342107	CTCF.p2	BC054370|Cux1|13047|cut-like homeobox 1	AK220173|Cux1|13047|cut-like homeobox 1	BC014289|Cux1|13047|cut-like homeobox 1	AK133543|Cux1|13047|cut-like homeobox 1	AK098096|Cux1|13047|cut-like homeobox 1	BC090847|Cux1|13047|cut-like homeobox 1	U68542|Cux1|13047|cut-like homeobox 1	NM_198602|Cux1|13047|cut-like homeobox 1	NM_009986|Cux1|13047|cut-like homeobox 1
mm9_v1_chr7_+_109118356_109118356	0.341759	CTCF.p2	BC049791|Numa1|101706|nuclear mitotic apparatus protein 1	NM_133947|Numa1|101706|nuclear mitotic apparatus protein 1
mm9_v1_chr16_+_93832365_93832557	0.340926	CTCF.p2	AK172896|Morc3|338467|microrchidia 3	NM_001045529|Morc3|338467|microrchidia 3	BC145705|Morc3|338467|microrchidia 3	AK144885|Morc3|338467|microrchidia 3	AK132226|Morc3|338467|microrchidia 3	BC098072|Morc3|338467|microrchidia 3
mm9_v1_chr7_-_69609363_69609425	0.334516	CTCF.p2	BC138242|Peg12|27412|paternally expressed 12	BC138243|Peg12|27412|paternally expressed 12	AF148857|Peg12|27412|paternally expressed 12	NM_013788|Peg12|27412|paternally expressed 12
mm9_v1_chr8_-_87461251_87461273	0.331793	CTCF.p2	BC054524|Mast1|56527|microtubule associated serine/threonine kinase 1	NM_019945|Mast1|56527|microtubule associated serine/threonine kinase 1	AK141034|Mast1|56527|microtubule associated serine/threonine kinase 1
mm9_v1_chr19_+_42245078_42245100	0.329656	CTCF.p2	BC024801|Zfyve27|319740|zinc finger, FYVE domain containing 27	AK159065|Zfyve27|319740|zinc finger, FYVE domain containing 27	AK170237|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr2_-_148700920_148700989	0.328024	CTCF.p2	AK212642|Cst3|13010|cystatin C
mm9_v1_chr15_-_82184631_82184726	0.327381	CTCF.p2	AK002749|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	AK010988|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	AK012328|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	BC048451|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	NM_025987|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)
mm9_v1_chr1_-_38186482_38186550	0.325849	CTCF.p2	BC058093|Rev1|56210|REV1 homolog (S. cerevisiae)	NM_019570|Rev1|56210|REV1 homolog (S. cerevisiae)	AK048838|Rev1|56210|REV1 homolog (S. cerevisiae)
mm9_v1_chr6_+_113647848_113647876	0.324606	CTCF.p2	AK146408|Tatdn2|381801|TatD DNase domain containing 2
mm9_v1_chr12_+_77866520_77866582	0.32181	CTCF.p2	AK085076|Churc1|211151|churchill domain containing 1	BC076499|Churc1|211151|churchill domain containing 1	NM_206534|Churc1|211151|churchill domain containing 1	BC019472|Churc1|211151|churchill domain containing 1
mm9_v1_chr1_+_72354084_72354123	0.319212	CTCF.p2	X66323|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AF166486|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK010416|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK167312|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK168913|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK169838|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	BC029218|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5
mm9_v1_chr11_-_103224972_103225005	0.314304	CTCF.p2	
mm9_v1_chr11_+_100436316_100436329	0.314039	CTCF.p2	M58045|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr1_-_33871218_33871259	0.308651	CTCF.p2	BC062154|Zfp451|98403|zinc finger protein 451
mm9_v1_chr2_-_165981138_165981162	0.301399	CTCF.p2	AK081643|Sulf2|72043|sulfatase 2	BC062900|Sulf2|72043|sulfatase 2	AK133336|Sulf2|72043|sulfatase 2	NM_028072|Sulf2|72043|sulfatase 2	AK034712|Sulf2|72043|sulfatase 2
mm9_v1_chr9_+_108838660_108838726	0.299476	CTCF.p2	NM_025407|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK004031|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK160337|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK002292|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK151764|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK010553|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK013128|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK168218|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK167911|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	BC030064|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1
mm9_v1_chr2_+_144425632_144425666	0.296972	CTCF.p2	AK158898|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)
mm9_v1_chr9_-_43921084_43921184	0.295709	CTCF.p2	BC086757|Rnf26|213211|ring finger protein 26	BC063251|Rnf26|213211|ring finger protein 26	NM_153762|Rnf26|213211|ring finger protein 26	BC004739|Rnf26|213211|ring finger protein 26
mm9_v1_chr19_+_18787654_18787754	0.294152	CTCF.p2	AK145019|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	AK155389|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	AK083631|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	NM_177640|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	BC020125|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene
mm9_v1_chr6_+_86315639_86315728	0.29314	CTCF.p2	BC103775|Fam136a|66488|family with sequence similarity 136, member A	BC024049|Fam136a|66488|family with sequence similarity 136, member A	NM_025591|Fam136a|66488|family with sequence similarity 136, member A	AK008550|Fam136a|66488|family with sequence similarity 136, member A	AK005280|Fam136a|66488|family with sequence similarity 136, member A	AK141279|Fam136a|66488|family with sequence similarity 136, member A	CT010180|Fam136a|66488|family with sequence similarity 136, member A	BC013621|Fam136a|66488|family with sequence similarity 136, member A
mm9_v1_chr11_-_54846882_54846976	0.289694	CTCF.p2	AK161625|Anxa6|11749|annexin A6	AK010342|Anxa6|11749|annexin A6	BC005595|Anxa6|11749|annexin A6	AK077843|Anxa6|11749|annexin A6	AK013026|Anxa6|11749|annexin A6	AK030728|Anxa6|11749|annexin A6	AK150035|Anxa6|11749|annexin A6	AK203372|Anxa6|11749|annexin A6	AK179628|Anxa6|11749|annexin A6	AK147066|Anxa6|11749|annexin A6	AK160754|Anxa6|11749|annexin A6	AK146509|Anxa6|11749|annexin A6	AK146592|Anxa6|11749|annexin A6	AK154101|Anxa6|11749|annexin A6	AK087941|Anxa6|11749|annexin A6	AK169774|Anxa6|11749|annexin A6	NM_001110211|Anxa6|11749|annexin A6	NM_013472|Anxa6|11749|annexin A6
mm9_v1_chr10_+_121176978_121177017	0.289548	CTCF.p2	BC065058|BC048403|270802|cDNA sequence BC048403	NM_173022|BC048403|270802|cDNA sequence BC048403	AK166238|BC048403|270802|cDNA sequence BC048403	AK138662|BC048403|270802|cDNA sequence BC048403	AK162911|BC048403|270802|cDNA sequence BC048403	AK087110|BC048403|270802|cDNA sequence BC048403	AK169891|BC048403|270802|cDNA sequence BC048403
mm9_v1_chr7_+_17428413_17428564	0.288667	CTCF.p2	AK037030|Prkd2|101540|protein kinase D2	NM_178900|Prkd2|101540|protein kinase D2	AK154029|Prkd2|101540|protein kinase D2
mm9_v1_chr6_+_124881437_124881453	0.288627	CTCF.p2	AK141241|Mlf2|30853|myeloid leukemia factor 2	AK143972|Mlf2|30853|myeloid leukemia factor 2
mm9_v1_chrX_+_12648604_12648673	0.28822	CTCF.p2	AK049283|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	NM_009481|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	AK028443|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	DQ086491|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	U67874|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome
mm9_v1_chr2_-_175800159_175800169	0.285349	CTCF.p2	BC032262|Gm14288|13999|predicted gene 14288	BC086907|Gm14288|13999|predicted gene 14288	NM_001033123|Gm14288|13999|predicted gene 14288
mm9_v1_chr2_-_149962381_149962433	0.284749	CTCF.p2	AF242378|Zfp120|104348|zinc finger protein 120	BC141128|Zfp120|104348|zinc finger protein 120	AK033399|Zfp120|104348|zinc finger protein 120	AF211867|Zfp120|104348|zinc finger protein 120	AF211868|Zfp120|104348|zinc finger protein 120	AF211869|Zfp120|104348|zinc finger protein 120	NM_023266|Zfp120|104348|zinc finger protein 120	NM_181266|Zfp120|104348|zinc finger protein 120	AK132318|Zfp120|104348|zinc finger protein 120
mm9_v1_chr3_-_95674541_95674541	0.281655	CTCF.p2	BC027546|Mrps21|66292|mitochondrial ribosomal protein S21	BC125658|Mrps21|66292|mitochondrial ribosomal protein S21	BC125660|Mrps21|66292|mitochondrial ribosomal protein S21	NM_078479|Mrps21|66292|mitochondrial ribosomal protein S21
mm9_v1_chr2_+_97306600_97306623	0.278853	CTCF.p2	
mm9_v1_chr5_+_110539110_110539110	0.277891	CTCF.p2	AK043719|Zfp605|675812|zinc finger protein 605	NM_001163996|Zfp605|675812|zinc finger protein 605
mm9_v1_chr5_+_139728268_139728480	0.271862	CTCF.p2	NM_026269|Get4|67604|golgi to ER traffic protein 4 homolog (S. cerevisiae)	AK003551|Get4|67604|golgi to ER traffic protein 4 homolog (S. cerevisiae)
mm9_v1_chr19_-_40686701_40686712	0.266757	CTCF.p2	BC027335|Tctn3|67590|tectonic family member 3	NM_026260|Tctn3|67590|tectonic family member 3
mm9_v1_chr12_-_101963226_101963268	0.263869	CTCF.p2	AY341873|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	AY341881|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	BC035298|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	NM_153587|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5
mm9_v1_chr19_-_40686713_40686746	0.262693	CTCF.p2	DQ278871|Tctn3|67590|tectonic family member 3
mm9_v1_chr11_+_116396053_116396165	0.260292	CTCF.p2	AF068749|Sphk1|20698|sphingosine kinase 1	NM_011451|Sphk1|20698|sphingosine kinase 1	AF415213|Sphk1|20698|sphingosine kinase 1
mm9_v1_chr17_-_71339826_71339901	0.260128	CTCF.p2	BC099425|Myl12b|67938|myosin, light chain 12B, regulatory	BC131925|Myl12b|67938|myosin, light chain 12B, regulatory	BC131927|Myl12b|67938|myosin, light chain 12B, regulatory	BC028878|Myl12b|67938|myosin, light chain 12B, regulatory	AK002885|Myl12b|67938|myosin, light chain 12B, regulatory	AK168316|Myl12b|67938|myosin, light chain 12B, regulatory	NM_023402|Myl12b|67938|myosin, light chain 12B, regulatory	AK146115|Myl12b|67938|myosin, light chain 12B, regulatory	AK005133|Myl12b|67938|myosin, light chain 12B, regulatory	AK160123|Myl12b|67938|myosin, light chain 12B, regulatory
mm9_v1_chr8_-_106966697_106966807	0.259514	CTCF.p2	AK152157|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK140743|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK147899|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK161434|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK161494|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2
mm9_v1_chr1_-_164670534_164670687	0.259066	CTCF.p2	AK013732|Prrc2c|226562|proline-rich coiled-coil 2C	AK077748|Prrc2c|226562|proline-rich coiled-coil 2C	BC053406|Prrc2c|226562|proline-rich coiled-coil 2C	BC064009|Prrc2c|226562|proline-rich coiled-coil 2C	BC021412|Prrc2c|226562|proline-rich coiled-coil 2C	BC037745|Prrc2c|226562|proline-rich coiled-coil 2C	BC080672|Prrc2c|226562|proline-rich coiled-coil 2C	AK030766|Prrc2c|226562|proline-rich coiled-coil 2C	AK135245|Prrc2c|226562|proline-rich coiled-coil 2C	BC006723|Prrc2c|226562|proline-rich coiled-coil 2C	AK007762|Prrc2c|226562|proline-rich coiled-coil 2C	AK167018|Prrc2c|226562|proline-rich coiled-coil 2C	AK082487|Prrc2c|226562|proline-rich coiled-coil 2C	AK166509|Prrc2c|226562|proline-rich coiled-coil 2C	NM_001081290|Prrc2c|226562|proline-rich coiled-coil 2C
mm9_v1_chr10_-_93353946_93353946	0.256709	CTCF.p2	AK165301|Metap2|56307|methionine aminopeptidase 2	NM_019648|Metap2|56307|methionine aminopeptidase 2
mm9_v1_chr14_-_119105434_119105469	0.253633	CTCF.p2	NM_001033336|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4	NM_001163676|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4
mm9_v1_chr2_-_155644921_155645017	0.252612	CTCF.p2	AK157030|BC029722|613262|cDNA sequence BC029722	AK158030|BC029722|613262|cDNA sequence BC029722	BC029722|BC029722|613262|cDNA sequence BC029722	AK159419|BC029722|613262|cDNA sequence BC029722
mm9_v1_chr19_-_5510453_5510506	0.251739	CTCF.p2	AK047234|Snx32|225861|sorting nexin 32	BC048922|Snx32|225861|sorting nexin 32	NM_001024560|Snx32|225861|sorting nexin 32	AK037118|Snx32|225861|sorting nexin 32	AK143441|Snx32|225861|sorting nexin 32
mm9_v1_chr2_+_32218707_32218872	0.250788	CTCF.p2	AK089986|Ciz1|68379|CDKN1A interacting zinc finger protein 1	AK159103|Ciz1|68379|CDKN1A interacting zinc finger protein 1	BC018483|Ciz1|68379|CDKN1A interacting zinc finger protein 1	NM_028412|Ciz1|68379|CDKN1A interacting zinc finger protein 1	BC072624|Ciz1|68379|CDKN1A interacting zinc finger protein 1
mm9_v1_chr1_+_153418580_153418669	0.24737	CTCF.p2	AK170193|Fam129a|63913|family with sequence similarity 129, member A	AK136597|Fam129a|63913|family with sequence similarity 129, member A	BC099690|Fam129a|63913|family with sequence similarity 129, member A	BC021332|Fam129a|63913|family with sequence similarity 129, member A	BC069904|Fam129a|63913|family with sequence similarity 129, member A	AB049355|Fam129a|63913|family with sequence similarity 129, member A	BC038006|Fam129a|63913|family with sequence similarity 129, member A
mm9_v1_chr2_+_25413360_25413471	0.245052	CTCF.p2	AK003557|Edf1|59022|endothelial differentiation-related factor 1	AK002345|Edf1|59022|endothelial differentiation-related factor 1	AK010191|Edf1|59022|endothelial differentiation-related factor 1	AB030185|Edf1|59022|endothelial differentiation-related factor 1	NM_021519|Edf1|59022|endothelial differentiation-related factor 1	BC023472|Edf1|59022|endothelial differentiation-related factor 1	AJ309569|Edf1|59022|endothelial differentiation-related factor 1
mm9_v1_chr7_+_116077936_116077945	0.241185	CTCF.p2	BC070473|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	BC083190|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F
mm9_v1_chr2_-_164737043_164737249	0.238246	CTCF.p2	AK157577|Zfp335|329559|zinc finger protein 335	BC062921|Zfp335|329559|zinc finger protein 335	NM_199027|Zfp335|329559|zinc finger protein 335
mm9_v1_chr2_-_112208115_112208198	0.238043	CTCF.p2	AK167745|Tmem85|68032|transmembrane protein 85	BC051926|Tmem85|68032|transmembrane protein 85	AK003668|Tmem85|68032|transmembrane protein 85	AK012047|Tmem85|68032|transmembrane protein 85	AK078165|Tmem85|68032|transmembrane protein 85	NM_026519|Tmem85|68032|transmembrane protein 85
mm9_v1_chr16_+_3908975_3909105	0.235431	CTCF.p2	BC024910|Cluap1|76779|clusterin associated protein 1	NM_029738|Cluap1|76779|clusterin associated protein 1	AK009540|Cluap1|76779|clusterin associated protein 1	AK134648|Cluap1|76779|clusterin associated protein 1	AK166050|Cluap1|76779|clusterin associated protein 1	AK011846|Cluap1|76779|clusterin associated protein 1
mm9_v1_chr19_-_10944196_10944284	0.234556	CTCF.p2	BC006896|Tmem132a|98170|transmembrane protein 132A	AK173207|Tmem132a|98170|transmembrane protein 132A	AK036651|Tmem132a|98170|transmembrane protein 132A	AK032956|Tmem132a|98170|transmembrane protein 132A	AK048556|Tmem132a|98170|transmembrane protein 132A	AK164646|Tmem132a|98170|transmembrane protein 132A	NM_133804|Tmem132a|98170|transmembrane protein 132A
mm9_v1_chr16_+_18052952_18053027	0.228138	CTCF.p2	AK019346|Dgcr6|13353|DiGeorge syndrome critical region gene 6	NM_010047|Dgcr6|13353|DiGeorge syndrome critical region gene 6	AK160342|Dgcr6|13353|DiGeorge syndrome critical region gene 6
mm9_v1_chr5_-_33590505_33590587	0.227162	CTCF.p2	
mm9_v1_chr11_+_20443168_20443285	0.225813	CTCF.p2	AK147674|Sertad2|58172|SERTA domain containing 2	AK142268|Sertad2|58172|SERTA domain containing 2	NM_021372|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr5_-_108863376_108863419	0.225072	CTCF.p2	S52977|Atp5k|11958|ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e	BC089550|Atp5k|11958|ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e	BC028438|Atp5k|11958|ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e	NM_007507|Atp5k|11958|ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e	AK011342|Atp5k|11958|ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e
mm9_v1_chr19_+_6418755_6418803	0.224289	CTCF.p2	AK147295|Nrxn2|18190|neurexin II	AK147665|Nrxn2|18190|neurexin II
mm9_v1_chr11_-_3813644_3813898	0.224044	CTCF.p2	BC020181|Slc35e4|103710|solute carrier family 35, member E4	BC095957|Slc35e4|103710|solute carrier family 35, member E4
mm9_v1_chr12_+_109660951_109661025	0.223937	CTCF.p2	NM_001043335|Eml1|68519|echinoderm microtubule associated protein like 1
mm9_v1_chr14_-_48037874_48037887	0.223171	CTCF.p2	AK164575|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK036384|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK135820|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5
mm9_v1_chr11_-_115473816_115473816	0.221668	CTCF.p2	BC055812|Mif4gd|69674|MIF4G domain containing	NM_027162|Mif4gd|69674|MIF4G domain containing
mm9_v1_chr5_+_115157787_115157882	0.219425	CTCF.p2	NM_029992|Tchp|77832|trichoplein, keratin filament binding	AK020912|Tchp|77832|trichoplein, keratin filament binding	AK159947|Tchp|77832|trichoplein, keratin filament binding	AK083027|Tchp|77832|trichoplein, keratin filament binding	BC043048|Tchp|77832|trichoplein, keratin filament binding
mm9_v1_chr11_+_4537719_4537795	0.216973	CTCF.p2	AK051387|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	AK048876|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	AK148105|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	BC013537|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	NM_029291|Ascc2|75452|activating signal cointegrator 1 complex subunit 2
mm9_v1_chr14_-_58617936_58618123	0.213775	CTCF.p2	BC031373|Efha1|68514|EF hand domain family A1	AK167296|Efha1|68514|EF hand domain family A1	AK031692|Efha1|68514|EF hand domain family A1	AK049658|Efha1|68514|EF hand domain family A1	BC031172|Efha1|68514|EF hand domain family A1	NM_028643|Efha1|68514|EF hand domain family A1	AK014778|Efha1|68514|EF hand domain family A1
mm9_v1_chr5_-_121614560_121614637	0.212363	CTCF.p2	AK163809|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11
mm9_v1_chr2_-_174967487_174967557	0.209619	CTCF.p2	AK166773|Gm14399|100043761|predicted gene 14399
mm9_v1_chr14_-_119105340_119105428	0.206991	CTCF.p2	BC150822|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4	BC171974|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4	AK157723|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4
mm9_v1_chr15_+_99869071_99869185	0.205485	CTCF.p2	NM_001159361|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	AK147562|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm9_v1_chr12_+_109661191_109661223	0.202972	CTCF.p2	BC053094|Eml1|68519|echinoderm microtubule associated protein like 1
mm9_v1_chr7_+_152047290_152047409	0.202814	CTCF.p2	AK082814|Fgf4|14175|fibroblast growth factor 4	NM_010202|Fgf4|14175|fibroblast growth factor 4	BC104312|Fgf4|14175|fibroblast growth factor 4	BC104313|Fgf4|14175|fibroblast growth factor 4	M30642|Fgf4|14175|fibroblast growth factor 4
mm9_v1_chr8_+_109206967_109207060	0.202795	CTCF.p2	AK085030|Tmco7|272538|transmembrane and coiled-coil domains 7	NM_173037|Tmco7|272538|transmembrane and coiled-coil domains 7	AK077757|Tmco7|272538|transmembrane and coiled-coil domains 7	AK054283|Tmco7|272538|transmembrane and coiled-coil domains 7	BC066134|Tmco7|272538|transmembrane and coiled-coil domains 7	BC066869|Tmco7|272538|transmembrane and coiled-coil domains 7	BC069838|Tmco7|272538|transmembrane and coiled-coil domains 7	AK076373|Tmco7|272538|transmembrane and coiled-coil domains 7	AK173250|Tmco7|272538|transmembrane and coiled-coil domains 7
mm9_v1_chr5_-_144090853_144090920	0.20156	CTCF.p2	AK156167|Zdhhc4|72881|zinc finger, DHHC domain containing 4	BC019523|Zdhhc4|72881|zinc finger, DHHC domain containing 4	AK013609|Zdhhc4|72881|zinc finger, DHHC domain containing 4	NM_028379|Zdhhc4|72881|zinc finger, DHHC domain containing 4
mm9_v1_chr15_+_34012415_34012599	0.197688	CTCF.p2	AK087486|Mtdh|67154|metadherin	AK156119|Mtdh|67154|metadherin	AK029915|Mtdh|67154|metadherin	NM_026002|Mtdh|67154|metadherin	AK011808|Mtdh|67154|metadherin	AK151810|Mtdh|67154|metadherin	AK171976|Mtdh|67154|metadherin	AK151269|Mtdh|67154|metadherin	AF501309|Mtdh|67154|metadherin	AK009253|Mtdh|67154|metadherin	BC023115|Mtdh|67154|metadherin
mm9_v1_chr11_-_102308910_102308956	0.197088	CTCF.p2	BC025575|Fam171a2|217219|family with sequence similarity 171, member A2	BC064455|Fam171a2|217219|family with sequence similarity 171, member A2
mm9_v1_chr6_-_86347093_86347158	0.196604	CTCF.p2	AK049412|Pcyox1|66881|prenylcysteine oxidase 1	AK033373|Pcyox1|66881|prenylcysteine oxidase 1	AK004799|Pcyox1|66881|prenylcysteine oxidase 1	AK004840|Pcyox1|66881|prenylcysteine oxidase 1	AK031585|Pcyox1|66881|prenylcysteine oxidase 1	AK159981|Pcyox1|66881|prenylcysteine oxidase 1	AK161616|Pcyox1|66881|prenylcysteine oxidase 1	AK169209|Pcyox1|66881|prenylcysteine oxidase 1	AK145366|Pcyox1|66881|prenylcysteine oxidase 1	AK147190|Pcyox1|66881|prenylcysteine oxidase 1	BC028308|Pcyox1|66881|prenylcysteine oxidase 1	AK134528|Pcyox1|66881|prenylcysteine oxidase 1	NM_025823|Pcyox1|66881|prenylcysteine oxidase 1
mm9_v1_chr19_-_40686672_40686686	0.194931	CTCF.p2	BC080805|Tctn3|67590|tectonic family member 3
mm9_v1_chr2_+_164228640_164228712	0.194255	CTCF.p2	AK052449|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like	NM_009036|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like	Y10926|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like	BC152311|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like	AK131832|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like	AK131814|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like
mm9_v1_chr12_+_109661287_109661388	0.191757	CTCF.p2	AK044662|Eml1|68519|echinoderm microtubule associated protein like 1	BC079582|Eml1|68519|echinoderm microtubule associated protein like 1
mm9_v1_chr1_+_93076398_93076398	0.186962	CTCF.p2	AK144331|Ramp1|51801|receptor (calcitonin) activity modifying protein 1	NM_001168392|Ramp1|51801|receptor (calcitonin) activity modifying protein 1	NM_016894|Ramp1|51801|receptor (calcitonin) activity modifying protein 1	NM_178401|Ramp1|51801|receptor (calcitonin) activity modifying protein 1
mm9_v1_chr11_+_4035162_4035238	0.186585	CTCF.p2	NM_027859|Rnf215|71673|ring finger protein 215	AK154140|Rnf215|71673|ring finger protein 215	AK002414|Rnf215|71673|ring finger protein 215	AK047194|Rnf215|71673|ring finger protein 215	BC115907|Rnf215|71673|ring finger protein 215	BC115908|Rnf215|71673|ring finger protein 215	BC103627|Rnf215|71673|ring finger protein 215
mm9_v1_chr6_+_48696195_48696205	0.185666	CTCF.p2	AB126961|Gimap5|317757|GTPase, IMAP family member 5	NM_175035|Gimap5|317757|GTPase, IMAP family member 5	AK087160|Gimap5|317757|GTPase, IMAP family member 5
mm9_v1_chr9_-_44169716_44169758	0.185014	CTCF.p2	AK032484|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK047228|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK153963|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK037658|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK162897|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK004695|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK090030|Vps11|71732|vacuolar protein sorting 11 (yeast)	BC029004|Vps11|71732|vacuolar protein sorting 11 (yeast)	NM_027889|Vps11|71732|vacuolar protein sorting 11 (yeast)
mm9_v1_chr1_-_154725297_154725297	0.182555	CTCF.p2	AK129101|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_001160257|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr13_+_35833181_35833351	0.182272	CTCF.p2	BC062123|Cdyl|12593|chromodomain protein, Y chromosome-like	AK156509|Cdyl|12593|chromodomain protein, Y chromosome-like	NM_001123386|Cdyl|12593|chromodomain protein, Y chromosome-like
mm9_v1_chr18_+_85020800_85020860	0.182024	CTCF.p2	BC024341|Cyb5|109672|cytochrome b-5	AK002426|Cyb5|109672|cytochrome b-5	AK013210|Cyb5|109672|cytochrome b-5	NM_025797|Cyb5|109672|cytochrome b-5
mm9_v1_chr3_+_89050340_89050434	0.180626	CTCF.p2	AK002479|Krtcap2|66059|keratinocyte associated protein 2	NM_025327|Krtcap2|66059|keratinocyte associated protein 2	AK003310|Krtcap2|66059|keratinocyte associated protein 2	BC031492|Krtcap2|66059|keratinocyte associated protein 2
mm9_v1_chr8_-_28266926_28267017	0.179927	CTCF.p2	BC091001|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)
mm9_v1_chr19_+_4000579_4000658	0.179906	CTCF.p2	AK045197|Nudt8|66387|nudix (nucleoside diphosphate linked moiety X)-type motif 8	NM_025529|Nudt8|66387|nudix (nucleoside diphosphate linked moiety X)-type motif 8	BC056443|Nudt8|66387|nudix (nucleoside diphosphate linked moiety X)-type motif 8	AK170076|Nudt8|66387|nudix (nucleoside diphosphate linked moiety X)-type motif 8	AK002605|Nudt8|66387|nudix (nucleoside diphosphate linked moiety X)-type motif 8	AK009700|Nudt8|66387|nudix (nucleoside diphosphate linked moiety X)-type motif 8
mm9_v1_chr19_-_5295389_5295474	0.17479	CTCF.p2	BC029745|Sf3b2|319322|splicing factor 3b, subunit 2	AK151354|Sf3b2|319322|splicing factor 3b, subunit 2	AK019282|Sf3b2|319322|splicing factor 3b, subunit 2	AK152965|Sf3b2|319322|splicing factor 3b, subunit 2	AK012009|Sf3b2|319322|splicing factor 3b, subunit 2	AK150961|Sf3b2|319322|splicing factor 3b, subunit 2	AK159893|Sf3b2|319322|splicing factor 3b, subunit 2	AK011613|Sf3b2|319322|splicing factor 3b, subunit 2	BC045207|Sf3b2|319322|splicing factor 3b, subunit 2	AK146540|Sf3b2|319322|splicing factor 3b, subunit 2	AK152327|Sf3b2|319322|splicing factor 3b, subunit 2	AK146864|Sf3b2|319322|splicing factor 3b, subunit 2	AK147687|Sf3b2|319322|splicing factor 3b, subunit 2	AK149776|Sf3b2|319322|splicing factor 3b, subunit 2	AK012643|Sf3b2|319322|splicing factor 3b, subunit 2	AK142136|Sf3b2|319322|splicing factor 3b, subunit 2	AK146063|Sf3b2|319322|splicing factor 3b, subunit 2	BC049118|Sf3b2|319322|splicing factor 3b, subunit 2	NM_030109|Sf3b2|319322|splicing factor 3b, subunit 2
mm9_v1_chr15_+_102300972_102301062	0.171152	CTCF.p2	NM_001103165|Pcbp2|18521|poly(rC) binding protein 2	NM_001103166|Pcbp2|18521|poly(rC) binding protein 2	NM_001174073|Pcbp2|18521|poly(rC) binding protein 2	NM_011042|Pcbp2|18521|poly(rC) binding protein 2
mm9_v1_chr4_+_45355369_45355371	0.163466	CTCF.p2	AK083428|Dcaf10|242418|DDB1 and CUL4 associated factor 10
mm9_v1_chr17_+_43153490_43153503	0.160653	CTCF.p2	AK043823|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21	NM_178589|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21
mm9_v1_chr15_+_82176533_82176625	0.160468	CTCF.p2	
mm9_v1_chr1_-_33871261_33871282	0.158323	CTCF.p2	AK122541|Zfp451|98403|zinc finger protein 451	BC019546|Zfp451|98403|zinc finger protein 451	AK030088|Zfp451|98403|zinc finger protein 451	NM_133817|Zfp451|98403|zinc finger protein 451
mm9_v1_chr14_+_112074336_112074336	0.154719	CTCF.p2	NM_198865|Slitrk5|75409|SLIT and NTRK-like family, member 5
mm9_v1_chr4_+_151307819_151307875	0.154423	CTCF.p2	NM_172704|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11	AK089983|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11	AK053156|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11	AK156793|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11	AK171781|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11	AK172542|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11	BC075619|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11	BC085257|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11	BC079852|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11
mm9_v1_chr2_-_168032561_168032640	0.150626	CTCF.p2	NM_009628|Adnp|11538|activity-dependent neuroprotective protein	AK129214|Adnp|11538|activity-dependent neuroprotective protein
mm9_v1_chr11_-_120239930_120240089	0.148879	CTCF.p2	BC034203|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK009114|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK148234|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK147900|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK165631|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK082976|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	NM_027980|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene
mm9_v1_chr3_+_89049813_89049887	0.148818	CTCF.p2	BC043030|Krtcap2|66059|keratinocyte associated protein 2
mm9_v1_chr19_-_40686689_40686693	0.147373	CTCF.p2	AK015861|Tctn3|67590|tectonic family member 3	AK016982|Tctn3|67590|tectonic family member 3	AK030156|Tctn3|67590|tectonic family member 3
mm9_v1_chr7_-_112959469_112959543	0.145572	CTCF.p2	AK012906|Mrpl17|27397|mitochondrial ribosomal protein L17	AK088838|Mrpl17|27397|mitochondrial ribosomal protein L17	BC010718|Mrpl17|27397|mitochondrial ribosomal protein L17	AK147957|Mrpl17|27397|mitochondrial ribosomal protein L17	AK144092|Mrpl17|27397|mitochondrial ribosomal protein L17
mm9_v1_chr18_+_37164856_37165092	0.144887	CTCF.p2	BC079625|Pcdha10|12943|protocadherin alpha 10	AY013757|Pcdha10|12943|protocadherin alpha 10	NM_009961|Pcdha10|12943|protocadherin alpha 10	AB008178|Pcdha10|12943|protocadherin alpha 10
mm9_v1_chr7_+_71646515_71646591	0.143174	CTCF.p2	BC057620|Apba2|11784|amyloid beta (A4) precursor protein-binding, family A, member 2	NM_007461|Apba2|11784|amyloid beta (A4) precursor protein-binding, family A, member 2
mm9_v1_chr9_+_77961211_77961215	0.141537	CTCF.p2	AF225918|Ick|56542|intestinal cell kinase
mm9_v1_chr5_-_135554038_135554160	0.139975	CTCF.p2	BC044789|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AK158287|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AK090181|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AY081953|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AY352519|Vps37d|194309|vacuolar protein sorting 37D (yeast)	NM_177574|Vps37d|194309|vacuolar protein sorting 37D (yeast)
mm9_v1_chr3_+_145600974_145601015	0.139234	CTCF.p2	BC049577|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK010378|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	BC115465|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	NM_025555|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK019404|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK077565|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene
mm9_v1_chr1_+_16095854_16096053	0.136087	CTCF.p2	AF456767|Rdh10|98711|retinol dehydrogenase 10 (all-trans)	AK149656|Rdh10|98711|retinol dehydrogenase 10 (all-trans)	BC019796|Rdh10|98711|retinol dehydrogenase 10 (all-trans)	NM_133832|Rdh10|98711|retinol dehydrogenase 10 (all-trans)
mm9_v1_chr18_+_85020742_85020795	0.13256	CTCF.p2	AK132102|Cyb5|109672|cytochrome b-5
mm9_v1_chr7_+_128061257_128061281	0.13047	CTCF.p2	AK005034|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	NM_001164096|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	NM_025298|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr2_+_156546758_156546851	0.129166	CTCF.p2	AK089484|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK150554|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK156212|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK211649|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AF073935|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr19_-_27463532_27463668	0.127227	CTCF.p2	
mm9_v1_chr1_+_162125349_162125420	0.124718	CTCF.p2	AK007673|Mrps14|64659|mitochondrial ribosomal protein S14	AK010242|Mrps14|64659|mitochondrial ribosomal protein S14	AK144195|Mrps14|64659|mitochondrial ribosomal protein S14	AK083352|Mrps14|64659|mitochondrial ribosomal protein S14	NM_025474|Mrps14|64659|mitochondrial ribosomal protein S14	BC044057|Mrps14|64659|mitochondrial ribosomal protein S14
mm9_v1_chr12_+_114394594_114394673	0.123469	CTCF.p2	AK029651|4930427A07Rik|104732|RIKEN cDNA 4930427A07 gene	NM_134041|4930427A07Rik|104732|RIKEN cDNA 4930427A07 gene	AK146189|4930427A07Rik|104732|RIKEN cDNA 4930427A07 gene	AK220305|4930427A07Rik|104732|RIKEN cDNA 4930427A07 gene	AK167092|4930427A07Rik|104732|RIKEN cDNA 4930427A07 gene
mm9_v1_chr10_+_127528632_127528696	0.122055	CTCF.p2	AK140355|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	AK155523|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	AK035400|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	BC020083|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A
mm9_v1_chr8_+_124900494_124900538	0.120226	CTCF.p2	NM_001029993|Zc3h18|76014|zinc finger CCCH-type containing 18	NM_001029994|Zc3h18|76014|zinc finger CCCH-type containing 18
mm9_v1_chr19_-_10379342_10379355	0.115603	CTCF.p2	AK147384|Dagla|269060|diacylglycerol lipase, alpha
mm9_v1_chr9_+_108710676_108710814	0.113977	CTCF.p2	BC064818|Nckipsd|80987|NCK interacting protein with SH3 domain	NM_030729|Nckipsd|80987|NCK interacting protein with SH3 domain	AK134725|Nckipsd|80987|NCK interacting protein with SH3 domain	AF130313|Nckipsd|80987|NCK interacting protein with SH3 domain
mm9_v1_chr9_+_21760196_21760229	0.111733	CTCF.p2	NM_025870|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	BC150493|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	AK009864|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	BC019749|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	AK043948|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene
mm9_v1_chr13_+_33057312_33057381	0.111668	CTCF.p2	AK078753|Serpinb6b|20708|serine (or cysteine) peptidase inhibitor, clade B, member 6b	AK154048|Serpinb6b|20708|serine (or cysteine) peptidase inhibitor, clade B, member 6b	AK171741|Serpinb6b|20708|serine (or cysteine) peptidase inhibitor, clade B, member 6b	AK084785|Serpinb6b|20708|serine (or cysteine) peptidase inhibitor, clade B, member 6b	BC061050|Serpinb6b|20708|serine (or cysteine) peptidase inhibitor, clade B, member 6b	NM_011454|Serpinb6b|20708|serine (or cysteine) peptidase inhibitor, clade B, member 6b	U96707|Serpinb6b|20708|serine (or cysteine) peptidase inhibitor, clade B, member 6b
mm9_v1_chr10_+_127814144_127814228	0.111208	CTCF.p2	AK144017|Ankrd52|237615|ankyrin repeat domain 52	AK032429|Ankrd52|237615|ankyrin repeat domain 52	NM_172790|Ankrd52|237615|ankyrin repeat domain 52	AK090124|Ankrd52|237615|ankyrin repeat domain 52	AK035533|Ankrd52|237615|ankyrin repeat domain 52	BC117907|Ankrd52|237615|ankyrin repeat domain 52	BC117908|Ankrd52|237615|ankyrin repeat domain 52
mm9_v1_chr17_+_3114963_3115105	0.109554	CTCF.p2	AK157957|Scaf8|106583|SR-related CTD-associated factor 8	AK042381|Scaf8|106583|SR-related CTD-associated factor 8	NM_134123|Scaf8|106583|SR-related CTD-associated factor 8	BC075621|Scaf8|106583|SR-related CTD-associated factor 8	AK122451|Scaf8|106583|SR-related CTD-associated factor 8
mm9_v1_chr17_-_87424652_87424745	0.104814	CTCF.p2	AK218842|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	AK171083|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	BC028862|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	D50264|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	NM_008838|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	AK132796|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F
mm9_v1_chr10_-_14264800_14264841	0.102895	CTCF.p2	AB183545|Gpr126|215798|G protein-coupled receptor 126	NM_001002268|Gpr126|215798|G protein-coupled receptor 126
mm9_v1_chr18_+_75527015_75527182	0.102032	CTCF.p2	NM_001042660|Smad7|17131|MAD homolog 7 (Drosophila)	AK013237|Smad7|17131|MAD homolog 7 (Drosophila)	AJ000550|Smad7|17131|MAD homolog 7 (Drosophila)
mm9_v1_chr5_-_137774755_137774840	0.0951263	CTCF.p2	AK154118|Slc12a9|83704|solute carrier family 12 (potassium/chloride transporters), member 9	NM_031406|Slc12a9|83704|solute carrier family 12 (potassium/chloride transporters), member 9	AK050658|Slc12a9|83704|solute carrier family 12 (potassium/chloride transporters), member 9
mm9_v1_chr19_+_6401701_6401708	0.0917638	CTCF.p2	BC051474|Rasgrp2|19395|RAS, guanyl releasing protein 2
mm9_v1_chr19_-_34736879_34736908	0.0915107	CTCF.p2	AK090072|Gm14446|667373|predicted gene 14446
mm9_v1_chr14_-_55482884_55482994	0.0870181	CTCF.p2	AK129361|Homez|239099|homeodomain leucine zipper-encoding gene	AY258064|Homez|239099|homeodomain leucine zipper-encoding gene	NM_001177705|Homez|239099|homeodomain leucine zipper-encoding gene
mm9_v1_chr17_+_42452895_42453084	0.0808973	CTCF.p2	NM_028474|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene	AK014270|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene	BC145294|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene
mm9_v1_chr1_-_36603970_36604088	0.0777062	CTCF.p2	AK177190|Ankrd39|109346|ankyrin repeat domain 39	AK018681|Ankrd39|109346|ankyrin repeat domain 39	AK042896|Ankrd39|109346|ankyrin repeat domain 39	NM_026241|Ankrd39|109346|ankyrin repeat domain 39	AK160231|Ankrd39|109346|ankyrin repeat domain 39	AK081207|Ankrd39|109346|ankyrin repeat domain 39	AK030874|Ankrd39|109346|ankyrin repeat domain 39	AK158215|Ankrd39|109346|ankyrin repeat domain 39	BC117004|Ankrd39|109346|ankyrin repeat domain 39	BC119100|Ankrd39|109346|ankyrin repeat domain 39	BC144893|Ankrd39|109346|ankyrin repeat domain 39
mm9_v1_chr8_-_13253995_13254161	0.0776074	CTCF.p2	AK081786|Adprhl1|234072|ADP-ribosylhydrolase like 1	AJ427360|Adprhl1|234072|ADP-ribosylhydrolase like 1	BC063759|Adprhl1|234072|ADP-ribosylhydrolase like 1	AK084501|Adprhl1|234072|ADP-ribosylhydrolase like 1	NM_172750|Adprhl1|234072|ADP-ribosylhydrolase like 1
mm9_v1_chr11_+_43247209_43247232	0.0761669	CTCF.p2	NM_148673|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	NM_198936|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)
mm9_v1_chr5_+_151476361_151476427	0.0726697	CTCF.p2	AY102267|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)	NM_175310|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
mm9_v1_chr8_+_124900561_124900686	0.0725305	CTCF.p2	AK166802|Zc3h18|76014|zinc finger CCCH-type containing 18	AK031413|Zc3h18|76014|zinc finger CCCH-type containing 18	AK159881|Zc3h18|76014|zinc finger CCCH-type containing 18	BC003319|Zc3h18|76014|zinc finger CCCH-type containing 18
mm9_v1_chr9_+_46081146_46081375	0.0662972	CTCF.p2	NM_011752|Zfp259|22687|zinc finger protein 259	AK158995|Zfp259|22687|zinc finger protein 259	AK170372|Zfp259|22687|zinc finger protein 259	AK044472|Zfp259|22687|zinc finger protein 259	AB041612|Zfp259|22687|zinc finger protein 259	BC021397|Zfp259|22687|zinc finger protein 259	AK167849|Zfp259|22687|zinc finger protein 259	AK168061|Zfp259|22687|zinc finger protein 259	AK215085|Zfp259|22687|zinc finger protein 259
mm9_v1_chr19_-_11765519_11765545	0.064833	CTCF.p2	BC100313|Oosp1|170834|oocyte secreted protein 1	AB086437|Oosp1|170834|oocyte secreted protein 1	AB050982|Oosp1|170834|oocyte secreted protein 1	AK033038|Oosp1|170834|oocyte secreted protein 1	AK162132|Oosp1|170834|oocyte secreted protein 1	NM_133353|Oosp1|170834|oocyte secreted protein 1	AF420487|Oosp1|170834|oocyte secreted protein 1
mm9_v1_chr9_-_75446888_75446974	0.0644852	CTCF.p2	AK076562|Tmod2|50876|tropomodulin 2	AK015263|Tmod2|50876|tropomodulin 2	AK017072|Tmod2|50876|tropomodulin 2	BC052227|Tmod2|50876|tropomodulin 2	NM_001038710|Tmod2|50876|tropomodulin 2	AK015719|Tmod2|50876|tropomodulin 2
mm9_v1_chr17_+_43938887_43938898	0.0608171	CTCF.p2	AK138768|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr11_-_78235686_78235735	0.0605618	CTCF.p2	AF201903|Slc13a2|20500|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2	NM_022411|Slc13a2|20500|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2	BC013493|Slc13a2|20500|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2	AK140972|Slc13a2|20500|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2
mm9_v1_chr11_+_119129350_119129459	0.0605034	CTCF.p2	AK140042|Gaa|14387|glucosidase, alpha, acid	BC010210|Gaa|14387|glucosidase, alpha, acid	AK207669|Gaa|14387|glucosidase, alpha, acid	AK150970|Gaa|14387|glucosidase, alpha, acid	AK139333|Gaa|14387|glucosidase, alpha, acid	AK197627|Gaa|14387|glucosidase, alpha, acid	AK179414|Gaa|14387|glucosidase, alpha, acid
mm9_v1_chr8_+_119467267_119467410	0.0589727	CTCF.p2	AX775769|Atmin|234776|ATM interactor	NM_177700|Atmin|234776|ATM interactor	BC060631|Atmin|234776|ATM interactor	BC027752|Atmin|234776|ATM interactor	AK122281|Atmin|234776|ATM interactor
mm9_v1_chr6_+_35202672_35202740	0.0570722	CTCF.p2	AK171831|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene	AK007895|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene	AK155176|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene	AK158055|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene	AK004512|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene
mm9_v1_chr2_+_78709363_78709419	0.0543577	CTCF.p2	AK168072|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	AK048227|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	AK076011|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	X92664|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)
mm9_v1_chr5_+_121364826_121364874	0.0534131	CTCF.p2	NM_133893|Oas1d|100535|2'-5' oligoadenylate synthetase 1D	AK054465|Oas1d|100535|2'-5' oligoadenylate synthetase 1D	AK136001|Oas1d|100535|2'-5' oligoadenylate synthetase 1D	AY055829|Oas1d|100535|2'-5' oligoadenylate synthetase 1D	AB067532|Oas1d|100535|2'-5' oligoadenylate synthetase 1D	BC052835|Oas1d|100535|2'-5' oligoadenylate synthetase 1D
mm9_v1_chr11_-_60013141_60013246	0.0528619	CTCF.p2	AK040663|Srebf1|20787|sterol regulatory element binding transcription factor 1
mm9_v1_chr13_-_54150991_54151026	0.0503417	CTCF.p2	AK044723|Drd1a|13488|dopamine receptor D1A	NM_010076|Drd1a|13488|dopamine receptor D1A
mm9_v1_chr2_-_25052245_25052332	0.0488105	CTCF.p2	BC013092|A830007P12Rik|227612|RIKEN cDNA A830007P12 gene	AK155540|A830007P12Rik|227612|RIKEN cDNA A830007P12 gene	NM_146115|A830007P12Rik|227612|RIKEN cDNA A830007P12 gene
mm9_v1_chr9_-_60535274_60535340	0.0458388	CTCF.p2	AK051325|Lrrc49|102747|leucine rich repeat containing 49	NM_001146047|Lrrc49|102747|leucine rich repeat containing 49
mm9_v1_chr10_-_6979627_6979716	0.0421572	CTCF.p2	AK082372|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c
mm9_v1_chr9_-_106378901_106379002	0.0395187	CTCF.p2	BC062204|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK044223|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK088125|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AF368233|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	NM_145619|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK145259|Parp3|235587|poly (ADP-ribose) polymerase family, member 3
mm9_v1_chr8_-_72519966_72520302	0.0378761	CTCF.p2	AK160058|Gatad2a|234366|GATA zinc finger domain containing 2A	AK089074|Gatad2a|234366|GATA zinc finger domain containing 2A	NM_001113345|Gatad2a|234366|GATA zinc finger domain containing 2A	NM_145596|Gatad2a|234366|GATA zinc finger domain containing 2A	AK083473|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr10_-_80522871_80522963	0.0373226	CTCF.p2	AK039966|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	BC003836|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	NM_024499|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK051005|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK079168|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK165557|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm9_v1_chr14_-_55479326_55479326	0.0348923	CTCF.p2	BC094669|Homez|239099|homeodomain leucine zipper-encoding gene	NM_183174|Homez|239099|homeodomain leucine zipper-encoding gene
mm9_v1_chr17_+_28046196_28046431	0.0339642	CTCF.p2	BC050847|Anks1|224650|ankyrin repeat and SAM domain containing 1	NM_181413|Anks1|224650|ankyrin repeat and SAM domain containing 1	AK129094|Anks1|224650|ankyrin repeat and SAM domain containing 1	AK147273|Anks1|224650|ankyrin repeat and SAM domain containing 1
mm9_v1_chr4_+_88400771_88400771	0.0336181	CTCF.p2	NM_001085528|Gm13271|435791|predicted gene 13271
mm9_v1_chr4_+_106926486_106926541	0.0279931	CTCF.p2	BC021897|Hspb11|72938|heat shock protein family B (small), member 11	BC034465|Hspb11|72938|heat shock protein family B (small), member 11	AK013636|Hspb11|72938|heat shock protein family B (small), member 11	AK157651|Hspb11|72938|heat shock protein family B (small), member 11	NM_028394|Hspb11|72938|heat shock protein family B (small), member 11
mm9_v1_chr8_-_19893102_19893120	0.0244686	CTCF.p2	AK030539|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK088897|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene
mm9_v1_chr8_+_13785611_13785668	0.0220096	CTCF.p2	AK020823|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	BC116988|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	BC119035|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	NM_025924|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK033239|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK011127|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK166277|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK016053|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK145471|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)
mm9_v1_chrX_+_155810110_155810226	0.0141163	CTCF.p2	AK031113|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK030774|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK166629|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK166852|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	NM_025437|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK005185|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK012714|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK012233|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK021283|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK090053|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK165574|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK007301|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK077710|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	BC027284|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK134827|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK134969|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK012464|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked
mm9_v1_chr5_-_124804365_124804457	0.0105484	CTCF.p2	AF011644|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm9_v1_chr6_+_125311859_125312178	0.00948168	CTCF.p2	AK190321|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a
mm9_v1_chrX_+_35542969_35543017	0.00544474	CTCF.p2	NM_001079513|Zbtb33|56805|zinc finger and BTB domain containing 33	NM_020256|Zbtb33|56805|zinc finger and BTB domain containing 33	AK087417|Zbtb33|56805|zinc finger and BTB domain containing 33	AK089423|Zbtb33|56805|zinc finger and BTB domain containing 33	AF097416|Zbtb33|56805|zinc finger and BTB domain containing 33
mm9_v1_chr7_-_109166668_109166710	0.00458026	CTCF.p2	AF122907|Il18bp|16068|interleukin 18 binding protein	NM_010531|Il18bp|16068|interleukin 18 binding protein	AK003370|Il18bp|16068|interleukin 18 binding protein
mm9_v1_chr7_-_112959591_112959616	0.00180882	CTCF.p2	NM_025301|Mrpl17|27397|mitochondrial ribosomal protein L17
