mm9_v1_chrX_+_38754568_38754592	21.0436	EOMES.p2	AK138615|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chrX_+_38754480_38754557	19.4419	EOMES.p2	NM_016886|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	BC086678|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chrX_+_38754605_38754612	15.0606	EOMES.p2	BC076584|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr17_-_90436488_90436574	13.8072	EOMES.p2	AJ006802|Nrxn1|18189|neurexin I
mm9_v1_chrX_+_38754658_38754822	12.9755	EOMES.p2	AK161163|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	AB022342|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	BC129855|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	BC129856|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	AK220530|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	AK135043|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	AB079072|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	AB102775|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	AB102776|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	AF483494|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	AF483495|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	AK046158|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr1_-_75250520_75250549	11.3204	EOMES.p2	BC064020|Ptprn|19275|protein tyrosine phosphatase, receptor type, N
mm9_v1_chr5_+_19413335_19413335	10.1373	EOMES.p2	AK147530|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_001170745|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_015823|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chr8_-_126957835_126957835	10.087	EOMES.p2	NM_171824|Pgbd5|209966|piggyBac transposable element derived 5
mm9_v1_chrX_+_133200982_133201022	9.59475	EOMES.p2	AK003156|Tceal3|594844|transcription elongation factor A (SII)-like 3	AK017585|Tceal3|594844|transcription elongation factor A (SII)-like 3	BC027131|Tceal3|594844|transcription elongation factor A (SII)-like 3
mm9_v1_chr7_-_4498168_4498168	9.41815	EOMES.p2	BC047148|Syt5|53420|synaptotagmin V	NM_016908|Syt5|53420|synaptotagmin V
mm9_v1_chr1_-_135972341_135972341	9.14949	EOMES.p2	
mm9_v1_chr7_-_107806887_107806989	8.77269	EOMES.p2	AK005102|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1	AK164683|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1	AK158172|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1	NM_001163183|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1	NM_001163184|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1	NM_001163185|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1
mm9_v1_chr3_-_115955629_115955694	8.71135	EOMES.p2	BC157981|Gpr88|64378|G-protein coupled receptor 88	BC051941|Gpr88|64378|G-protein coupled receptor 88
mm9_v1_chrX_+_133200913_133200976	8.41183	EOMES.p2	NM_001029978|Tceal3|594844|transcription elongation factor A (SII)-like 3	AK158996|Tceal3|594844|transcription elongation factor A (SII)-like 3
mm9_v1_chr2_+_121134843_121134847	8.35898	EOMES.p2	AK018185|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr1_-_136229504_136229504	8.32638	EOMES.p2	EU568872|Ppfia4|68507|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	NM_001144855|Ppfia4|68507|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
mm9_v1_chr15_-_44584003_44584003	8.28719	EOMES.p2	AB232449|Sybu|319613|syntabulin (syntaxin-interacting)	BC065045|Sybu|319613|syntabulin (syntaxin-interacting)	NM_178765|Sybu|319613|syntabulin (syntaxin-interacting)
mm9_v1_chr12_+_71008808_71008844	8.194	EOMES.p2	AK140185|Atl1|73991|atlastin GTPase 1	AK046919|Atl1|73991|atlastin GTPase 1	BC050784|Atl1|73991|atlastin GTPase 1
mm9_v1_chr6_+_114081227_114081234	8.05628	EOMES.p2	AK140423|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11	AK053078|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11	NM_172890|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11
mm9_v1_chr4_+_48058102_48058256	7.95465	EOMES.p2	BC038520|Nr4a3|18124|nuclear receptor subfamily 4, group A, member 3	BC068150|Nr4a3|18124|nuclear receptor subfamily 4, group A, member 3
mm9_v1_chrX_-_147091911_147092125	7.88392	EOMES.p2	AK047777|Tro|56191|trophinin	AB036783|Tro|56191|trophinin	AF288605|Tro|56191|trophinin	AF288606|Tro|56191|trophinin	NM_001002272|Tro|56191|trophinin	NM_019548|Tro|56191|trophinin	BC075630|Tro|56191|trophinin
mm9_v1_chr3_+_55265811_55265928	7.87789	EOMES.p2	AF155821|Dclk1|13175|doublecortin-like kinase 1	AK032424|Dclk1|13175|doublecortin-like kinase 1	AK081200|Dclk1|13175|doublecortin-like kinase 1	AB073969|Dclk1|13175|doublecortin-like kinase 1	AK047716|Dclk1|13175|doublecortin-like kinase 1	AY968047|Dclk1|13175|doublecortin-like kinase 1	AY968048|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr12_+_110783786_110783839	7.55659	EOMES.p2	BC048191|Meg3|17263|maternally expressed 3
mm9_v1_chr11_+_69154265_69154342	7.51893	EOMES.p2	AK002962|A030009H04Rik|80515|RIKEN cDNA A030009H04 gene	AK045471|A030009H04Rik|80515|RIKEN cDNA A030009H04 gene	AB041807|A030009H04Rik|80515|RIKEN cDNA A030009H04 gene	BC021519|A030009H04Rik|80515|RIKEN cDNA A030009H04 gene
mm9_v1_chr12_+_89961317_89961336	7.5178	EOMES.p2	AK078216|Nrxn3|18191|neurexin III	AK082055|Nrxn3|18191|neurexin III	NM_001198587|Nrxn3|18191|neurexin III	AK149250|Nrxn3|18191|neurexin III
mm9_v1_chr10_+_122701051_122701245	7.46486	EOMES.p2	AK139403|Fam19a2|268354|family with sequence similarity 19, member A2	NM_182807|Fam19a2|268354|family with sequence similarity 19, member A2	AK140763|Fam19a2|268354|family with sequence similarity 19, member A2	BC027082|Fam19a2|268354|family with sequence similarity 19, member A2
mm9_v1_chr12_-_42212538_42212554	7.32883	EOMES.p2	AK036316|Lrrn3|16981|leucine rich repeat protein 3, neuronal	D49802|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr15_+_103333554_103333728	7.32531	EOMES.p2	L01695|Pde1b|18574|phosphodiesterase 1B, Ca2+-calmodulin dependent	NM_008800|Pde1b|18574|phosphodiesterase 1B, Ca2+-calmodulin dependent
mm9_v1_chr1_-_166368439_166368560	7.28581	EOMES.p2	EF437334|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr17_+_8436671_8436678	7.16067	EOMES.p2	NM_001190334|Ccr6|12458|chemokine (C-C motif) receptor 6	NM_001190335|Ccr6|12458|chemokine (C-C motif) receptor 6	NM_001190336|Ccr6|12458|chemokine (C-C motif) receptor 6	NM_001190337|Ccr6|12458|chemokine (C-C motif) receptor 6	BC100756|Ccr6|12458|chemokine (C-C motif) receptor 6	BC100757|Ccr6|12458|chemokine (C-C motif) receptor 6	BC100758|Ccr6|12458|chemokine (C-C motif) receptor 6	BC105669|Ccr6|12458|chemokine (C-C motif) receptor 6
mm9_v1_chr9_+_89804612_89804703	7.14559	EOMES.p2	NM_001039655|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	NM_011245|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	L20899|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1
mm9_v1_chr3_+_75361454_75361503	7.10389	EOMES.p2	NM_009250|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	AK032152|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	AK133770|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	BC006776|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	AJ001700|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1
mm9_v1_chr12_-_4344470_4344503	7.09292	EOMES.p2	U64606|Ncoa1|17977|nuclear receptor coactivator 1	BC068177|Ncoa1|17977|nuclear receptor coactivator 1
mm9_v1_chr18_+_61123204_61123218	7.01146	EOMES.p2	NM_009792|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	X87142|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr15_+_103333440_103333464	6.99097	EOMES.p2	BC058531|Pde1b|18574|phosphodiesterase 1B, Ca2+-calmodulin dependent
mm9_v1_chr14_+_70857227_70857399	6.90761	EOMES.p2	AK049900|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	NM_145981|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	BC030494|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	BC139360|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein
mm9_v1_chr10_+_98453513_98453709	6.81754	EOMES.p2	AK053569|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	AK042547|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chr2_+_181287207_181287250	6.79259	EOMES.p2	AK135001|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5
mm9_v1_chr12_+_110783593_110783620	6.61258	EOMES.p2	AK018105|Meg3|17263|maternally expressed 3	AK140201|Meg3|17263|maternally expressed 3
mm9_v1_chr4_-_126427788_126428041	6.40974	EOMES.p2	AK216583|Ncdn|26562|neurochondrin	AK122327|Ncdn|26562|neurochondrin
mm9_v1_chr9_-_26816373_26816466	6.26893	EOMES.p2	AK216030|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	AK007456|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)
mm9_v1_chr9_+_75159201_75159201	6.09932	EOMES.p2	NM_010313|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5	U69145|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5
mm9_v1_chr6_-_87483228_87483252	6.0751	EOMES.p2	AK169897|Arhgap25|232201|Rho GTPase activating protein 25	NM_001037727|Arhgap25|232201|Rho GTPase activating protein 25	AK159598|Arhgap25|232201|Rho GTPase activating protein 25	AK159941|Arhgap25|232201|Rho GTPase activating protein 25
mm9_v1_chrX_+_45976982_45977308	6.05552	EOMES.p2	NM_001166450|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	BC048692|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AF155812|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AF155813|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm9_v1_chr6_+_115189004_115189072	5.96909	EOMES.p2	AK029181|Syn2|20965|synapsin II
mm9_v1_chr14_+_56130147_56130196	5.93855	EOMES.p2	BC051994|Cpne6|12891|copine VI	AB008893|Cpne6|12891|copine VI	NM_009947|Cpne6|12891|copine VI
mm9_v1_chr15_-_75397601_75397641	5.88535	EOMES.p2	NM_011837|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr9_-_26815760_26815835	5.83959	EOMES.p2	AK210283|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)
mm9_v1_chr8_-_4259126_4259300	5.78491	EOMES.p2	AK158759|Ctxn1|330695|cortexin 1	BC028881|Ctxn1|330695|cortexin 1	AK154120|Ctxn1|330695|cortexin 1	NM_183315|Ctxn1|330695|cortexin 1
mm9_v1_chr9_+_21742717_21742717	5.76562	EOMES.p2	AY438023|BC018242|235044|cDNA sequence BC018242	BC018242|BC018242|235044|cDNA sequence BC018242	NM_144935|BC018242|235044|cDNA sequence BC018242
mm9_v1_chr14_-_70923865_70923890	5.72345	EOMES.p2	BC061137|Sftpc|20389|surfactant associated protein C	NM_011359|Sftpc|20389|surfactant associated protein C
mm9_v1_chr1_-_134287712_134287857	5.57764	EOMES.p2	AK172957|Tmcc2|68875|transmembrane and coiled-coil domains 2	BC052035|Tmcc2|68875|transmembrane and coiled-coil domains 2	NM_178874|Tmcc2|68875|transmembrane and coiled-coil domains 2
mm9_v1_chr3_+_55265654_55265683	5.5664	EOMES.p2	NM_001111051|Dclk1|13175|doublecortin-like kinase 1	NM_001111052|Dclk1|13175|doublecortin-like kinase 1	NM_001195539|Dclk1|13175|doublecortin-like kinase 1	NM_001195540|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chrX_+_39855629_39855874	5.5364	EOMES.p2	AK042476|Sh2d1a|20400|SH2 domain protein 1A	AF072903|Sh2d1a|20400|SH2 domain protein 1A	AK040076|Sh2d1a|20400|SH2 domain protein 1A	NM_011364|Sh2d1a|20400|SH2 domain protein 1A	BC065390|Sh2d1a|20400|SH2 domain protein 1A	AF097632|Sh2d1a|20400|SH2 domain protein 1A	AF097633|Sh2d1a|20400|SH2 domain protein 1A	BC147367|Sh2d1a|20400|SH2 domain protein 1A	BC147368|Sh2d1a|20400|SH2 domain protein 1A
mm9_v1_chr6_+_79969636_79969636	5.51923	EOMES.p2	NM_178731|Lrrtm4|243499|leucine rich repeat transmembrane neuronal 4
mm9_v1_chr6_-_24905939_24906124	5.51842	EOMES.p2	BC147241|Tmem229a|319832|transmembrane protein 229A	BC147242|Tmem229a|319832|transmembrane protein 229A	AK140056|Tmem229a|319832|transmembrane protein 229A	AK087465|Tmem229a|319832|transmembrane protein 229A	NM_177013|Tmem229a|319832|transmembrane protein 229A
mm9_v1_chr7_+_26052714_26052731	5.48501	EOMES.p2	AK147535|Cic|71722|capicua homolog (Drosophila)
mm9_v1_chr7_-_25772525_25772570	5.46774	EOMES.p2	BC040512|Atp1a3|232975|ATPase, Na+/K+ transporting, alpha 3 polypeptide
mm9_v1_chrX_+_102318792_102318798	5.38712	EOMES.p2	AK209904|Magee1|107528|melanoma antigen, family E, 1
mm9_v1_chr9_-_40812668_40812668	5.38311	EOMES.p2	AF001104|Crtam|54698|cytotoxic and regulatory T cell molecule	BC117715|Crtam|54698|cytotoxic and regulatory T cell molecule	BC117716|Crtam|54698|cytotoxic and regulatory T cell molecule	NM_019465|Crtam|54698|cytotoxic and regulatory T cell molecule
mm9_v1_chr7_+_27542160_27542205	5.32767	EOMES.p2	BC137965|Cyp2b19|13090|cytochrome P450, family 2, subfamily b, polypeptide 19	BC137966|Cyp2b19|13090|cytochrome P450, family 2, subfamily b, polypeptide 19	AK029227|Cyp2b19|13090|cytochrome P450, family 2, subfamily b, polypeptide 19	AF047529|Cyp2b19|13090|cytochrome P450, family 2, subfamily b, polypeptide 19	NM_007814|Cyp2b19|13090|cytochrome P450, family 2, subfamily b, polypeptide 19
mm9_v1_chr5_-_73143979_73144015	5.2673	EOMES.p2	U16145|Txk|22165|TXK tyrosine kinase	AK088209|Txk|22165|TXK tyrosine kinase	AK138069|Txk|22165|TXK tyrosine kinase	AK138786|Txk|22165|TXK tyrosine kinase	NM_001122754|Txk|22165|TXK tyrosine kinase	U19607|Txk|22165|TXK tyrosine kinase
mm9_v1_chr17_+_24641034_24641180	5.26149	EOMES.p2	AK049987|Caskin1|268932|CASK interacting protein 1
mm9_v1_chr2_-_91773029_91773128	5.24868	EOMES.p2	
mm9_v1_chr14_-_9142289_9142295	5.21358	EOMES.p2	BC055107|Fam107a|268709|family with sequence similarity 107, member A	NM_183187|Fam107a|268709|family with sequence similarity 107, member A	AK165722|Fam107a|268709|family with sequence similarity 107, member A
mm9_v1_chr3_-_81878554_81878643	5.21125	EOMES.p2	AK147128|Gucy1b3|54195|guanylate cyclase 1, soluble, beta 3	AK139406|Gucy1b3|54195|guanylate cyclase 1, soluble, beta 3	AF020339|Gucy1b3|54195|guanylate cyclase 1, soluble, beta 3	AF297083|Gucy1b3|54195|guanylate cyclase 1, soluble, beta 3	BC050945|Gucy1b3|54195|guanylate cyclase 1, soluble, beta 3	BC056995|Gucy1b3|54195|guanylate cyclase 1, soluble, beta 3	NM_001161796|Gucy1b3|54195|guanylate cyclase 1, soluble, beta 3	NM_017469|Gucy1b3|54195|guanylate cyclase 1, soluble, beta 3
mm9_v1_chr17_-_51965912_51965912	5.13107	EOMES.p2	NM_001163631|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr1_+_183282758_183282760	5.07703	EOMES.p2	AK013789|Cnih3|72978|cornichon homolog 3 (Drosophila)	NM_001160211|Cnih3|72978|cornichon homolog 3 (Drosophila)	NM_001160212|Cnih3|72978|cornichon homolog 3 (Drosophila)	NM_028408|Cnih3|72978|cornichon homolog 3 (Drosophila)	AK033911|Cnih3|72978|cornichon homolog 3 (Drosophila)
mm9_v1_chr11_-_83881811_83881914	5.07397	EOMES.p2	BC002130|Dusp14|56405|dual specificity phosphatase 14	AK166230|Dusp14|56405|dual specificity phosphatase 14	AK079362|Dusp14|56405|dual specificity phosphatase 14	NM_019819|Dusp14|56405|dual specificity phosphatase 14	AK163738|Dusp14|56405|dual specificity phosphatase 14
mm9_v1_chr6_-_98877291_98877410	4.97761	EOMES.p2	
mm9_v1_chr2_-_12933305_12933373	4.87695	EOMES.p2	AB044560|C1ql3|227580|C1q-like 3
mm9_v1_chr5_-_123183537_123183571	4.86927	EOMES.p2	AK213252|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chrX_+_104479684_104479684	4.86019	EOMES.p2	NM_001177782|Gpr174|213439|G protein-coupled receptor 174
mm9_v1_chr5_+_138187303_138187355	4.74216	EOMES.p2	BC023761|Tsc22d4|78829|TSC22 domain family, member 4
mm9_v1_chr7_+_19469999_19470074	4.67824	EOMES.p2	BC005582|Pglyrp1|21946|peptidoglycan recognition protein 1	AF076482|Pglyrp1|21946|peptidoglycan recognition protein 1	AK008335|Pglyrp1|21946|peptidoglycan recognition protein 1	NM_009402|Pglyrp1|21946|peptidoglycan recognition protein 1	X86374|Pglyrp1|21946|peptidoglycan recognition protein 1	AK043227|Pglyrp1|21946|peptidoglycan recognition protein 1	AF193843|Pglyrp1|21946|peptidoglycan recognition protein 1	CT010165|Pglyrp1|21946|peptidoglycan recognition protein 1
mm9_v1_chr14_+_52513284_52513333	4.62791	EOMES.p2	NM_001039676|Slc39a2|214922|solute carrier family 39 (zinc transporter), member 2	BC113769|Slc39a2|214922|solute carrier family 39 (zinc transporter), member 2	AK170178|Slc39a2|214922|solute carrier family 39 (zinc transporter), member 2	AK089322|Slc39a2|214922|solute carrier family 39 (zinc transporter), member 2
mm9_v1_chr17_+_8435390_8435390	4.60669	EOMES.p2	AK089712|Ccr6|12458|chemokine (C-C motif) receptor 6	NM_009835|Ccr6|12458|chemokine (C-C motif) receptor 6
mm9_v1_chr15_-_95358578_95358610	4.58395	EOMES.p2	AK048913|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr1_+_87804443_87804463	4.50542	EOMES.p2	AK190372|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr6_-_127075853_127076093	4.5015	EOMES.p2	AK193960|Ccnd2|12444|cyclin D2	AK011429|Ccnd2|12444|cyclin D2	AK009602|Ccnd2|12444|cyclin D2
mm9_v1_chr5_-_23835349_23835431	4.49891	EOMES.p2	AF012869|Kcnh2|16511|potassium voltage-gated channel, subfamily H (eag-related), member 2	AF034762|Kcnh2|16511|potassium voltage-gated channel, subfamily H (eag-related), member 2
mm9_v1_chr16_-_31314534_31314685	4.49393	EOMES.p2	X82648|Apod|11815|apolipoprotein D	AK158118|Apod|11815|apolipoprotein D	AK157925|Apod|11815|apolipoprotein D	AK135046|Apod|11815|apolipoprotein D	AK157917|Apod|11815|apolipoprotein D	AK160729|Apod|11815|apolipoprotein D	AK162392|Apod|11815|apolipoprotein D	NM_007470|Apod|11815|apolipoprotein D	AK158405|Apod|11815|apolipoprotein D
mm9_v1_chr2_+_121692687_121692705	4.41749	EOMES.p2	BC064446|Casc4|319996|cancer susceptibility candidate 4	NM_177054|Casc4|319996|cancer susceptibility candidate 4	NM_199038|Casc4|319996|cancer susceptibility candidate 4
mm9_v1_chr10_+_117878101_117878253	4.40432	EOMES.p2	M28621|Ifng|15978|interferon gamma	AK089574|Ifng|15978|interferon gamma	NM_008337|Ifng|15978|interferon gamma	K00083|Ifng|15978|interferon gamma	FJ617514|Ifng|15978|interferon gamma	FJ617515|Ifng|15978|interferon gamma	FJ617516|Ifng|15978|interferon gamma	BC119063|Ifng|15978|interferon gamma	BC119065|Ifng|15978|interferon gamma	EF423643|Ifng|15978|interferon gamma	AY423847|Ifng|15978|interferon gamma
mm9_v1_chr2_-_33743465_33743465	4.29901	EOMES.p2	BC059907|Fam125b|72543|family with sequence similarity 125, member B	NM_175184|Fam125b|72543|family with sequence similarity 125, member B
mm9_v1_chr7_-_81429262_81429274	4.29758	EOMES.p2	AK020010|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1
mm9_v1_chr1_-_172487240_172487240	4.28272	EOMES.p2	AK138471|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	AK162919|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	NM_027528|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein
mm9_v1_chr17_+_74898763_74898780	4.21326	EOMES.p2	AK086213|Yipf4|67864|Yip1 domain family, member 4
mm9_v1_chr11_-_6328316_6328333	4.209	EOMES.p2	
mm9_v1_chr11_+_23978110_23978267	4.19549	EOMES.p2	AK140949|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AF051525|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AF169036|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AF169037|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AK122557|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AF186018|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AK004395|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AK043677|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	BC051418|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)
mm9_v1_chr18_+_37644674_37644812	4.14033	EOMES.p2	BC017149|Pcdhb17|93888|protocadherin beta 17	NM_053142|Pcdhb17|93888|protocadherin beta 17	AK077255|Pcdhb17|93888|protocadherin beta 17	AF326310|Pcdhb17|93888|protocadherin beta 17	AY013778|Pcdhb17|93888|protocadherin beta 17
mm9_v1_chrX_+_45976650_45976756	4.123	EOMES.p2	AF076981|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AF535150|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AF535151|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	NM_011398|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm9_v1_chr11_+_100437204_100437208	4.09018	EOMES.p2	AK041969|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	AK140280|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	NM_001146318|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr7_+_112574425_112574538	4.07016	EOMES.p2	AK053307|Cckbr|12426|cholecystokinin B receptor	AF019371|Cckbr|12426|cholecystokinin B receptor
mm9_v1_chr14_+_61351770_61351875	4.02829	EOMES.p2	AK151394|Spata13|219140|spermatogenesis associated 13
mm9_v1_chr16_-_67621054_67621188	4.00925	EOMES.p2	AK046800|Cadm2|239857|cell adhesion molecule 2	AK163636|Cadm2|239857|cell adhesion molecule 2	AK038842|Cadm2|239857|cell adhesion molecule 2	AK043760|Cadm2|239857|cell adhesion molecule 2	AK165030|Cadm2|239857|cell adhesion molecule 2	NM_001145977|Cadm2|239857|cell adhesion molecule 2	NM_178721|Cadm2|239857|cell adhesion molecule 2
mm9_v1_chr16_+_20695034_20695235	3.94229	EOMES.p2	BC092532|Fam131a|78408|family with sequence similarity 131, member A	AK049983|Fam131a|78408|family with sequence similarity 131, member A	NM_133778|Fam131a|78408|family with sequence similarity 131, member A
mm9_v1_chr15_+_80453912_80453951	3.9042	EOMES.p2	AF055465|Grap2|17444|GRB2-related adaptor protein 2	NM_010815|Grap2|17444|GRB2-related adaptor protein 2	AK156939|Grap2|17444|GRB2-related adaptor protein 2	AJ011735|Grap2|17444|GRB2-related adaptor protein 2	AF129477|Grap2|17444|GRB2-related adaptor protein 2	AF236118|Grap2|17444|GRB2-related adaptor protein 2
mm9_v1_chr2_-_56967331_56967448	3.8928	EOMES.p2	S53744|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2	AK158607|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2	NM_013613|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2
mm9_v1_chr3_+_64913564_64913693	3.87143	EOMES.p2	BC014701|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	NM_010597|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	U65591|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm9_v1_chr14_-_57744057_57744057	3.86453	EOMES.p2	BC063762|Gjb6|14623|gap junction protein, beta 6	NM_008128|Gjb6|14623|gap junction protein, beta 6
mm9_v1_chr9_-_123587923_123587963	3.78648	EOMES.p2	AJ964961|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	BC118933|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	NM_139142|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	AK160468|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	AK043297|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	AK080979|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	AK140445|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	AJ428067|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A
mm9_v1_chr8_-_55606109_55606134	3.73757	EOMES.p2	AK051731|Spcs3|76687|signal peptidase complex subunit 3 homolog (S. cerevisiae)
mm9_v1_chr14_+_84843366_84843370	3.69228	EOMES.p2	AK142358|Pcdh17|219228|protocadherin 17	AK147265|Pcdh17|219228|protocadherin 17	NM_001013753|Pcdh17|219228|protocadherin 17
mm9_v1_chr8_+_84239098_84239098	3.54105	EOMES.p2	BC064813|Inpp4b|234515|inositol polyphosphate-4-phosphatase, type II	NM_001024617|Inpp4b|234515|inositol polyphosphate-4-phosphatase, type II
mm9_v1_chr13_-_108516475_108516490	3.53564	EOMES.p2	AK013620|Zswim6|67263|zinc finger, SWIM domain containing 6	AK019357|Zswim6|67263|zinc finger, SWIM domain containing 6
mm9_v1_chr17_-_35838974_35838988	3.41167	EOMES.p2	AK138698|Ddr1|12305|discoidin domain receptor family, member 1	NM_001198831|Ddr1|12305|discoidin domain receptor family, member 1
mm9_v1_chr17_-_57217861_57217938	3.38351	EOMES.p2	AK040537|Dennd1c|70785|DENN/MADD domain containing 1C	AK170891|Dennd1c|70785|DENN/MADD domain containing 1C	BC035208|Dennd1c|70785|DENN/MADD domain containing 1C	NM_153551|Dennd1c|70785|DENN/MADD domain containing 1C	AK014482|Dennd1c|70785|DENN/MADD domain containing 1C
mm9_v1_chr7_-_31663995_31664046	3.38219	EOMES.p2	AK172301|Cd22|12483|CD22 antigen	AK156735|Cd22|12483|CD22 antigen	NM_009845|Cd22|12483|CD22 antigen
mm9_v1_chr12_+_110806715_110806837	3.37585	EOMES.p2	AK148955|Meg3|17263|maternally expressed 3
mm9_v1_chr17_-_35838818_35838957	3.33827	EOMES.p2	BC065998|Ddr1|12305|discoidin domain receptor family, member 1
mm9_v1_chr12_+_3891743_3891823	3.33676	EOMES.p2	AF480164|Dnmt3a|13435|DNA methyltransferase 3A	NM_153743|Dnmt3a|13435|DNA methyltransferase 3A	AK157792|Dnmt3a|13435|DNA methyltransferase 3A	AK077792|Dnmt3a|13435|DNA methyltransferase 3A	AK136170|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr4_-_129250806_129250884	3.3211	EOMES.p2	M23192|Lck|16818|lymphocyte protein tyrosine kinase	BC011474|Lck|16818|lymphocyte protein tyrosine kinase	NM_001162433|Lck|16818|lymphocyte protein tyrosine kinase
mm9_v1_chr4_+_102432943_102433069	3.30618	EOMES.p2	AK032439|Sgip1|73094|SH3-domain GRB2-like (endophilin) interacting protein 1	AK148302|Sgip1|73094|SH3-domain GRB2-like (endophilin) interacting protein 1	BC017596|Sgip1|73094|SH3-domain GRB2-like (endophilin) interacting protein 1	NM_144906|Sgip1|73094|SH3-domain GRB2-like (endophilin) interacting protein 1	AK014022|Sgip1|73094|SH3-domain GRB2-like (endophilin) interacting protein 1
mm9_v1_chr18_+_45719732_45719807	3.27925	EOMES.p2	AY123778|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	BC125475|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	BC137656|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AF357240|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AF533008|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AY280964|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	EU478850|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	NM_080465|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chrX_+_156411885_156411895	3.27362	EOMES.p2	AK200438|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr1_-_184246785_184246786	3.268	EOMES.p2	AK028774|Fbxo28|67948|F-box protein 28
mm9_v1_chr14_-_66211842_66211926	3.26206	EOMES.p2	NM_028811|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	AK012072|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	AK150058|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	BC057453|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	AK088457|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)
mm9_v1_chr1_+_174271338_174271373	3.2492	EOMES.p2	AK048864|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10	NM_001039484|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10
mm9_v1_chr6_-_116666759_116666930	3.2304	EOMES.p2	BC116440|Tmem72|319776|transmembrane protein 72	BC116441|Tmem72|319776|transmembrane protein 72	AK085603|Tmem72|319776|transmembrane protein 72	NM_178768|Tmem72|319776|transmembrane protein 72	AK049938|Tmem72|319776|transmembrane protein 72	AK033856|Tmem72|319776|transmembrane protein 72	BC093486|Tmem72|319776|transmembrane protein 72	AK049048|Tmem72|319776|transmembrane protein 72	AK141578|Tmem72|319776|transmembrane protein 72
mm9_v1_chr8_-_124999921_124999977	3.22384	EOMES.p2	AK079883|Rnf166|68718|ring finger protein 166	BC131924|Rnf166|68718|ring finger protein 166	BC132281|Rnf166|68718|ring finger protein 166	AK151813|Rnf166|68718|ring finger protein 166	NM_001033142|Rnf166|68718|ring finger protein 166
mm9_v1_chr14_-_55735114_55735220	3.21705	EOMES.p2	AB099712|Jph4|319984|junctophilin 4	NM_177049|Jph4|319984|junctophilin 4
mm9_v1_chr18_+_45719101_45719122	3.21345	EOMES.p2	AK149082|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK039033|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr1_-_162281701_162281701	3.18496	EOMES.p2	AK147634|Rabgap1l|29809|RAB GTPase activating protein 1-like	NM_001038621|Rabgap1l|29809|RAB GTPase activating protein 1-like
mm9_v1_chr3_-_94386590_94386623	3.13423	EOMES.p2	AK147452|Snx27|76742|sorting nexin family member 27	NM_001082484|Snx27|76742|sorting nexin family member 27	NM_029721|Snx27|76742|sorting nexin family member 27
mm9_v1_chr7_-_52622323_52622350	3.12114	EOMES.p2	
mm9_v1_chr17_+_21520684_21520739	3.05948	EOMES.p2	AK043955|Zfp677|210503|zinc finger protein 677	NM_172486|Zfp677|210503|zinc finger protein 677	BC057947|Zfp677|210503|zinc finger protein 677
mm9_v1_chr3_-_117063090_117063169	3.04786	EOMES.p2	AK079635|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm9_v1_chr15_-_95358306_95358472	3.02984	EOMES.p2	BC051968|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr5_+_138187390_138187596	3.00875	EOMES.p2	AK143608|Tsc22d4|78829|TSC22 domain family, member 4	AK079510|Tsc22d4|78829|TSC22 domain family, member 4	AF201286|Tsc22d4|78829|TSC22 domain family, member 4	AK201891|Tsc22d4|78829|TSC22 domain family, member 4	AK154490|Tsc22d4|78829|TSC22 domain family, member 4
mm9_v1_chr1_-_174259356_174259436	3.0086	EOMES.p2	AF130860|Kcnj9|16524|potassium inwardly-rectifying channel, subfamily J, member 9	AK033970|Kcnj9|16524|potassium inwardly-rectifying channel, subfamily J, member 9	NM_008429|Kcnj9|16524|potassium inwardly-rectifying channel, subfamily J, member 9	U11860|Kcnj9|16524|potassium inwardly-rectifying channel, subfamily J, member 9	AK046084|Kcnj9|16524|potassium inwardly-rectifying channel, subfamily J, member 9	AK015907|Kcnj9|16524|potassium inwardly-rectifying channel, subfamily J, member 9
mm9_v1_chr7_-_108729674_108729685	2.98834	EOMES.p2	AF016463|Art2b|11872|ADP-ribosyltransferase 2b	AF016465|Art2b|11872|ADP-ribosyltransferase 2b	NM_019915|Art2b|11872|ADP-ribosyltransferase 2b	X87612|Art2b|11872|ADP-ribosyltransferase 2b	S79913|Art2a-ps|11871|ADP-ribosyltransferase 2a, pseudogene
mm9_v1_chrX_-_98615554_98615567	2.95197	EOMES.p2	AK082075|Zmym3|56364|zinc finger, MYM-type 3	NM_001177988|Zmym3|56364|zinc finger, MYM-type 3	NM_019831|Zmym3|56364|zinc finger, MYM-type 3
mm9_v1_chr16_-_17406406_17406451	2.94525	EOMES.p2	BC075629|Pi4ka|224020|phosphatidylinositol 4-kinase, catalytic, alpha polypeptide	NM_001001983|Pi4ka|224020|phosphatidylinositol 4-kinase, catalytic, alpha polypeptide
mm9_v1_chr3_+_108163704_108163812	2.94184	EOMES.p2	AK013673|Sort1|20661|sortilin 1
mm9_v1_chr10_+_90038471_90038471	2.93138	EOMES.p2	BC098373|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177397|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr11_+_23980676_23980703	2.92862	EOMES.p2	AK045556|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	NM_001159290|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)
mm9_v1_chr14_-_68742863_68742903	2.90871	EOMES.p2	BC128564|Nefm|18040|neurofilament, medium polypeptide	BC119602|Nefm|18040|neurofilament, medium polypeptide	DQ201636|Nefm|18040|neurofilament, medium polypeptide	BC058333|Nefm|18040|neurofilament, medium polypeptide	AK051696|Nefm|18040|neurofilament, medium polypeptide	AK018234|Nefm|18040|neurofilament, medium polypeptide	AK051296|Nefm|18040|neurofilament, medium polypeptide	AK080794|Nefm|18040|neurofilament, medium polypeptide	AK164318|Nefm|18040|neurofilament, medium polypeptide	AK165041|Nefm|18040|neurofilament, medium polypeptide	BC052352|Nefm|18040|neurofilament, medium polypeptide
mm9_v1_chr2_-_57034164_57034231	2.89956	EOMES.p2	AK163349|BB557941|767815|expressed sequence BB557941
mm9_v1_chr2_+_164648185_164648185	2.88846	EOMES.p2	BC046831|Zswim1|71971|zinc finger, SWIM domain containing 1	NM_028028|Zswim1|71971|zinc finger, SWIM domain containing 1
mm9_v1_chrX_+_160346948_160347157	2.87991	EOMES.p2	AK045558|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK047724|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK167690|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK053941|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK005223|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	BC046964|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	NM_026887|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK043776|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit
mm9_v1_chr6_+_39523866_39523933	2.87476	EOMES.p2	AK028557|Adck2|57869|aarF domain containing kinase 2	AK161225|Adck2|57869|aarF domain containing kinase 2	AK028568|Adck2|57869|aarF domain containing kinase 2	NM_178873|Adck2|57869|aarF domain containing kinase 2
mm9_v1_chr6_-_60778740_60778989	2.84414	EOMES.p2	BC046764|Snca|20617|synuclein, alpha	AK156316|Snca|20617|synuclein, alpha	AK014472|Snca|20617|synuclein, alpha	AF033261|Snca|20617|synuclein, alpha	NM_001042451|Snca|20617|synuclein, alpha
mm9_v1_chr17_+_37210011_37210126	2.82955	EOMES.p2	AK013692|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1
mm9_v1_chr4_-_153531656_153531685	2.82647	EOMES.p2	
mm9_v1_chr3_-_32884000_32884000	2.81069	EOMES.p2	AK006035|Pex5l|58869|peroxisomal biogenesis factor 5-like	NM_001163517|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr3_-_75360749_75360821	2.80179	EOMES.p2	AK077308|Pdcd10|56426|programmed cell death 10
mm9_v1_chr7_+_129815257_129815287	2.79571	EOMES.p2	BC138673|Cacng3|54376|calcium channel, voltage-dependent, gamma subunit 3	BC145971|Cacng3|54376|calcium channel, voltage-dependent, gamma subunit 3	NM_019430|Cacng3|54376|calcium channel, voltage-dependent, gamma subunit 3	AJ272044|Cacng3|54376|calcium channel, voltage-dependent, gamma subunit 3
mm9_v1_chr7_-_147268150_147268199	2.79441	EOMES.p2	BC049663|Caly|68566|calcyon neuron-specific vesicular protein	NM_001190386|Caly|68566|calcyon neuron-specific vesicular protein
mm9_v1_chr16_-_48772068_48772250	2.79062	EOMES.p2	BC104350|Trat1|77647|T cell receptor associated transmembrane adaptor 1	BC104351|Trat1|77647|T cell receptor associated transmembrane adaptor 1	NM_198297|Trat1|77647|T cell receptor associated transmembrane adaptor 1	AJ297969|Trat1|77647|T cell receptor associated transmembrane adaptor 1	AK138735|Trat1|77647|T cell receptor associated transmembrane adaptor 1	AK030807|Trat1|77647|T cell receptor associated transmembrane adaptor 1
mm9_v1_chr2_+_143371807_143372226	2.77412	EOMES.p2	AK158598|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AK133620|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	NM_008792|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	BC057348|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AK158493|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AK161585|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	BC052013|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AK039783|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	M55669|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AF483512|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AF483513|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2
mm9_v1_chr16_-_94509462_94509462	2.76965	EOMES.p2	BC050090|Hlcs|110948|holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	NM_139145|Hlcs|110948|holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)
mm9_v1_chr17_-_29374656_29374735	2.76096	EOMES.p2	AK147529|Cpne5|240058|copine V	AK044042|Cpne5|240058|copine V	NM_153166|Cpne5|240058|copine V	BC036971|Cpne5|240058|copine V
mm9_v1_chr2_-_129525512_129525673	2.75004	EOMES.p2	BC137571|Pdyn|18610|prodynorphin	BC137572|Pdyn|18610|prodynorphin	AF026537|Pdyn|18610|prodynorphin	AK133597|Pdyn|18610|prodynorphin
mm9_v1_chr4_+_5726856_5726857	2.74697	EOMES.p2	AK049898|Fam110b|242297|family with sequence similarity 110, member B
mm9_v1_chr7_-_90803895_90803940	2.74433	EOMES.p2	AF017111|Il16|16170|interleukin 16	AK137802|Il16|16170|interleukin 16	AK169551|Il16|16170|interleukin 16	AK038319|Il16|16170|interleukin 16
mm9_v1_chr11_+_78139476_78139615	2.70741	EOMES.p2	AJ132391|Aldoc|11676|aldolase C, fructose-bisphosphate
mm9_v1_chr11_-_106163120_106163178	2.69298	EOMES.p2	AK019956|Gh|14599|growth hormone	AK019952|Gh|14599|growth hormone	AK019954|Gh|14599|growth hormone	AK019959|Gh|14599|growth hormone	AK019961|Gh|14599|growth hormone	AK030715|Gh|14599|growth hormone	BC061157|Gh|14599|growth hormone	NM_008117|Gh|14599|growth hormone	X02891|Gh|14599|growth hormone	AK030419|Gh|14599|growth hormone
mm9_v1_chr18_+_45719464_45719553	2.6712	EOMES.p2	AK087908|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK050390|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr1_+_37426061_37426065	2.66786	EOMES.p2	AK035867|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC120541|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC144747|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC144748|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	NM_172971|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I
mm9_v1_chr16_-_28445276_28445356	2.66653	EOMES.p2	U66201|Fgf12|14167|fibroblast growth factor 12	AK034335|Fgf12|14167|fibroblast growth factor 12	NM_183064|Fgf12|14167|fibroblast growth factor 12	AF020738|Fgf12|14167|fibroblast growth factor 12
mm9_v1_chr7_+_97278722_97279067	2.64765	EOMES.p2	AK170373|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC025566|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	NM_146194|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC057683|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC021491|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK144960|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC023843|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK220291|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC011470|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK162360|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AY206701|Picalm|233489|phosphatidylinositol binding clathrin assembly protein
mm9_v1_chr4_+_126800830_126800906	2.63875	EOMES.p2	BC060297|Zmym6|100177|zinc finger, MYM-type 6
mm9_v1_chr16_-_19983049_19983121	2.63013	EOMES.p2	AY350736|Klhl6|239743|kelch-like 6 (Drosophila)	BC100568|Klhl6|239743|kelch-like 6 (Drosophila)	NM_183390|Klhl6|239743|kelch-like 6 (Drosophila)
mm9_v1_chr9_-_49311823_49311910	2.56115	EOMES.p2	X07233|Ncam1|17967|neural cell adhesion molecule 1
mm9_v1_chr5_-_124028994_124029065	2.53741	EOMES.p2	AK003546|Clip1|56430|CAP-GLY domain containing linker protein 1
mm9_v1_chr4_+_147374850_147374855	2.53134	EOMES.p2	AK147180|Nppa|230899|natriuretic peptide type A	BC089615|Nppa|230899|natriuretic peptide type A	NM_008725|Nppa|230899|natriuretic peptide type A
mm9_v1_chr2_+_164648495_164648533	2.52978	EOMES.p2	AK010358|Zswim1|71971|zinc finger, SWIM domain containing 1	AK149816|Zswim1|71971|zinc finger, SWIM domain containing 1	AK150174|Zswim1|71971|zinc finger, SWIM domain containing 1
mm9_v1_chr2_+_119000244_119000254	2.52331	EOMES.p2	AK028753|Gm14137|623781|predicted gene 14137	NM_001039223|Gm14137|623781|predicted gene 14137	BC150984|Gm14137|623781|predicted gene 14137	BC150992|Gm14137|623781|predicted gene 14137
mm9_v1_chr18_+_82644510_82644514	2.52185	EOMES.p2	NM_001025245|Mbp|17196|myelin basic protein	NM_010777|Mbp|17196|myelin basic protein
mm9_v1_chr4_+_102432879_102432915	2.50873	EOMES.p2	AK043018|Sgip1|73094|SH3-domain GRB2-like (endophilin) interacting protein 1
mm9_v1_chr1_+_89652645_89652774	2.50858	EOMES.p2	AK030983|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	NM_029846|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK145673|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK155358|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK163246|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK170073|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	BC049122|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK048873|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK005181|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087879|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087880|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087881|Atg16l1|77040|autophagy-related 16-like 1 (yeast)
mm9_v1_chr12_+_30219769_30219800	2.47716	EOMES.p2	AK036205|Myt1l|17933|myelin transcription factor 1-like	NM_001093776|Myt1l|17933|myelin transcription factor 1-like	BC079651|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr2_+_124962427_124962427	2.47476	EOMES.p2	AK141570|Ctxn2|381418|cortexin 2	NM_001162934|Ctxn2|381418|cortexin 2
mm9_v1_chr9_-_21822333_21822348	2.47306	EOMES.p2	AK078068|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)
mm9_v1_chr17_-_36408313_36408377	2.46856	EOMES.p2	AK220298|Trim39|79263|tripartite motif-containing 39	AK145861|Trim39|79263|tripartite motif-containing 39	AK053507|Trim39|79263|tripartite motif-containing 39	NM_178281|Trim39|79263|tripartite motif-containing 39
mm9_v1_chr7_-_52494097_52494243	2.41813	EOMES.p2	CT010217|Cd37|12493|CD37 antigen	BC004610|Cd37|12493|CD37 antigen	BC031724|Cd37|12493|CD37 antigen	AK155966|Cd37|12493|CD37 antigen	AK155663|Cd37|12493|CD37 antigen	NM_007645|Cd37|12493|CD37 antigen	AK154250|Cd37|12493|CD37 antigen
mm9_v1_chr12_+_101447480_101447584	2.41805	EOMES.p2	BC021618|Calm1|12313|calmodulin 1
mm9_v1_chr6_+_48597232_48597434	2.39913	EOMES.p2	AK134199|Gimap8|243374|GTPase, IMAP family member 8	NM_001077410|Gimap8|243374|GTPase, IMAP family member 8	AB178029|Gimap8|243374|GTPase, IMAP family member 8	AK155985|Gimap8|243374|GTPase, IMAP family member 8	NM_212486|Gimap8|243374|GTPase, IMAP family member 8	BC137943|Gimap8|243374|GTPase, IMAP family member 8	BC137944|Gimap8|243374|GTPase, IMAP family member 8	AJ617674|Gimap8|243374|GTPase, IMAP family member 8
mm9_v1_chr10_+_4978808_4978917	2.39224	EOMES.p2	AK148504|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr19_-_29887442_29887463	2.38818	EOMES.p2	BC056759|Ranbp6|240614|RAN binding protein 6	AK044143|Ranbp6|240614|RAN binding protein 6	BC139395|Ranbp6|240614|RAN binding protein 6	BC139396|Ranbp6|240614|RAN binding protein 6	NM_177721|Ranbp6|240614|RAN binding protein 6
mm9_v1_chrX_+_140127827_140127856	2.37823	EOMES.p2	AF082297|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195046|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195047|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AJ496262|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AJ496263|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AM943853|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AM943854|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr2_+_172805342_172805379	2.37359	EOMES.p2	AF126400|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	AF163053|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	AF163054|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	NM_001083959|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	NM_001083960|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	NM_012046|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	AF169386|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	AF165313|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	AF167439|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	AF173848|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)	AF149309|Spo11|26972|sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae)
mm9_v1_chr6_+_7505070_7505199	2.34931	EOMES.p2	D17584|Tac1|21333|tachykinin 1	NM_009311|Tac1|21333|tachykinin 1	BC117081|Tac1|21333|tachykinin 1	BC119122|Tac1|21333|tachykinin 1	BC144737|Tac1|21333|tachykinin 1
mm9_v1_chr19_-_7289788_7289790	2.34622	EOMES.p2	
mm9_v1_chr1_+_6792987_6793017	2.3394	EOMES.p2	BC032273|St18|240690|suppression of tumorigenicity 18
mm9_v1_chr4_+_42963222_42963293	2.33297	EOMES.p2	BC027782|Dnajb5|56323|DnaJ (Hsp40) homolog, subfamily B, member 5	AK158972|Dnajb5|56323|DnaJ (Hsp40) homolog, subfamily B, member 5	BC048902|Dnajb5|56323|DnaJ (Hsp40) homolog, subfamily B, member 5
mm9_v1_chr18_+_37644390_37644448	2.30079	EOMES.p2	AK122533|Pcdhb17|93888|protocadherin beta 17
mm9_v1_chr10_+_72119562_72119594	2.29357	EOMES.p2	AK170637|Zwint|52696|ZW10 interactor
mm9_v1_chr4_+_9196439_9196508	2.28898	EOMES.p2	AK034888|Clvs1|74438|clavesin 1	AK083985|Clvs1|74438|clavesin 1	AK047462|Clvs1|74438|clavesin 1	AK083810|Clvs1|74438|clavesin 1	NM_028940|Clvs1|74438|clavesin 1	AK084350|Clvs1|74438|clavesin 1	AK043072|Clvs1|74438|clavesin 1	AK032549|Clvs1|74438|clavesin 1	BC062923|Clvs1|74438|clavesin 1
mm9_v1_chr2_-_25325248_25325271	2.28697	EOMES.p2	AB006361|Ptgds|19215|prostaglandin D2 synthase (brain)	BC043015|Ptgds|19215|prostaglandin D2 synthase (brain)	AK131859|Ptgds|19215|prostaglandin D2 synthase (brain)	NM_008963|Ptgds|19215|prostaglandin D2 synthase (brain)
mm9_v1_chr6_-_36761360_36761360	2.26269	EOMES.p2	NM_008973|Ptn|19242|pleiotrophin
mm9_v1_chr13_+_33175971_33176037	2.24928	EOMES.p2	NM_173052|Serpinb1b|282663|serine (or cysteine) peptidase inhibitor, clade B, member 1b	AK018226|Serpinb1b|282663|serine (or cysteine) peptidase inhibitor, clade B, member 1b	BC030354|Serpinb1b|282663|serine (or cysteine) peptidase inhibitor, clade B, member 1b
mm9_v1_chrX_+_45872593_45872777	2.23394	EOMES.p2	D83279|Rab33a|19337|RAB33A, member of RAS oncogene family	NM_011228|Rab33a|19337|RAB33A, member of RAS oncogene family	BC104390|Rab33a|19337|RAB33A, member of RAS oncogene family	BC104391|Rab33a|19337|RAB33A, member of RAS oncogene family	AB232628|Rab33a|19337|RAB33A, member of RAS oncogene family
mm9_v1_chr10_+_115614313_115614481	2.23263	EOMES.p2	NM_001161839|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	NM_001161838|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	NM_001161840|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	AF041866|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	AF129509|Ptprr|19279|protein tyrosine phosphatase, receptor type, R
mm9_v1_chr16_+_93762803_93762828	2.22469	EOMES.p2	AK122403|Dopey2|70028|dopey family member 2
mm9_v1_chr16_-_5008915_5008934	2.21756	EOMES.p2	
mm9_v1_chr7_-_85722668_85722860	2.21298	EOMES.p2	AY336094|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	NM_008746|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	NM_182809|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	BC139764|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	AF035399|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	AF035400|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3
mm9_v1_chr2_-_12932442_12932490	2.20536	EOMES.p2	EU399230|C1ql3|227580|C1q-like 3	BC024634|C1ql3|227580|C1q-like 3	NM_153155|C1ql3|227580|C1q-like 3
mm9_v1_chr17_-_24306262_24306418	2.2008	EOMES.p2	BC132267|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	BC132611|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	BC126881|Atp6v0c-ps2|100039636|ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2	BC099475|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	BC050939|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	AK146159|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	AK170346|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	BC083129|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	AK002871|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	AK028239|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	M64298|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	NM_009729|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	AK002570|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	AK014361|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C
mm9_v1_chr6_+_87863251_87863301	2.18651	EOMES.p2	AK207472|Copg|54161|coatomer protein complex, subunit gamma
mm9_v1_chr1_-_133141708_133141776	2.1531	EOMES.p2	AF053959|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK005059|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK155534|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK029321|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	BC089605|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	NM_018750|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5
mm9_v1_chrX_+_7215705_7215836	2.14602	EOMES.p2	NM_009305|Syp|20977|synaptophysin	AK034291|Syp|20977|synaptophysin	AK043756|Syp|20977|synaptophysin	AK090259|Syp|20977|synaptophysin	BC052354|Syp|20977|synaptophysin	BC014823|Syp|20977|synaptophysin	X95818|Syp|20977|synaptophysin
mm9_v1_chr2_+_65508501_65508501	2.1433	EOMES.p2	NM_001099298|Scn2a1|110876|sodium channel, voltage-gated, type II, alpha 1
mm9_v1_chr1_+_7162595_7162622	2.12082	EOMES.p2	AK018402|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm9_v1_chr3_-_115417932_115417972	2.09883	EOMES.p2	AK004591|S1pr1|13609|sphingosine-1-phosphate receptor 1	NM_007901|S1pr1|13609|sphingosine-1-phosphate receptor 1
mm9_v1_chr8_+_65430028_65430291	2.09805	EOMES.p2	AJ278998|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK049843|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK220280|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK013644|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	BC017601|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	NM_023689|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK164338|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	BC053334|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3
mm9_v1_chr3_+_105255247_105255337	2.08346	EOMES.p2	NM_001039347|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AK147574|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr2_-_118855069_118855083	2.06529	EOMES.p2	BC052687|Ccdc32|269336|coiled-coil domain containing 32
mm9_v1_chr13_+_59234737_59234835	2.04907	EOMES.p2	AK021108|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr11_+_78137699_78137848	2.02391	EOMES.p2	AK005077|Aldoc|11676|aldolase C, fructose-bisphosphate	NM_009657|Aldoc|11676|aldolase C, fructose-bisphosphate
mm9_v1_chr10_+_127662893_127662937	2.01162	EOMES.p2	AK053490|Mip|17339|major intrinsic protein of eye lens fiber	AK136287|Mip|17339|major intrinsic protein of eye lens fiber	NM_008600|Mip|17339|major intrinsic protein of eye lens fiber	BC082567|Mip|17339|major intrinsic protein of eye lens fiber	AK053494|Mip|17339|major intrinsic protein of eye lens fiber	U27502|Mip|17339|major intrinsic protein of eye lens fiber
mm9_v1_chr15_-_99079369_99079394	2.01135	EOMES.p2	AK158611|Mcrs1|51812|microspherule protein 1
mm9_v1_chr19_+_5050805_5050813	2.00859	EOMES.p2	BC011277|Rin1|225870|Ras and Rab interactor 1	NM_145495|Rin1|225870|Ras and Rab interactor 1
mm9_v1_chr10_+_97155692_97155767	2.00691	EOMES.p2	AK006212|4921510H08Rik|66716|RIKEN cDNA 4921510H08 gene	AK014860|4921510H08Rik|66716|RIKEN cDNA 4921510H08 gene	NM_025724|4921510H08Rik|66716|RIKEN cDNA 4921510H08 gene	BC120881|4921510H08Rik|66716|RIKEN cDNA 4921510H08 gene	BC120882|4921510H08Rik|66716|RIKEN cDNA 4921510H08 gene
mm9_v1_chr7_-_52494453_52494466	2.00282	EOMES.p2	AK154466|Cd37|12493|CD37 antigen
mm9_v1_chr10_-_18463500_18463563	2.00259	EOMES.p2	AK165602|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK148343|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK147963|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK147679|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	NM_001033258|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed
mm9_v1_chr15_+_16707855_16707855	1.99355	EOMES.p2	NM_009869|Cdh9|12565|cadherin 9
mm9_v1_chr14_-_66832383_66832388	1.99252	EOMES.p2	BC137704|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	BC144849|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	NM_001162366|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta
mm9_v1_chr19_+_11592938_11593140	1.97881	EOMES.p2	AF237909|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	NM_027209|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK172345|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	BC027425|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK075671|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK007613|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B
mm9_v1_chr11_+_121098532_121098610	1.97548	EOMES.p2	NM_026272|Narf|67608|nuclear prelamin A recognition factor	AK076232|Narf|67608|nuclear prelamin A recognition factor	AK081305|Narf|67608|nuclear prelamin A recognition factor	AK013432|Narf|67608|nuclear prelamin A recognition factor	BC016090|Narf|67608|nuclear prelamin A recognition factor
mm9_v1_chr2_+_30302648_30302832	1.97522	EOMES.p2	AK011735|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	AK208338|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	AK217782|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)
mm9_v1_chr1_+_60466568_60466597	1.96663	EOMES.p2	BC079545|Abi2|329165|abl-interactor 2
mm9_v1_chr18_+_35721855_35721928	1.96062	EOMES.p2	AK129199|Matr3|17184|matrin 3	BC029070|Matr3|17184|matrin 3	AK087939|Matr3|17184|matrin 3	AK088351|Matr3|17184|matrin 3	AK161128|Matr3|17184|matrin 3
mm9_v1_chr18_-_43219062_43219124	1.95372	EOMES.p2	BC026686|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	AK148956|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	AK013600|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	NM_028392|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm9_v1_chr14_-_56880985_56881096	1.95364	EOMES.p2	CT010272|Gzmb|14939|granzyme B	M12302|Gzmb|14939|granzyme B	AK167770|Gzmb|14939|granzyme B	AK157856|Gzmb|14939|granzyme B	BC002085|Gzmb|14939|granzyme B	NM_013542|Gzmb|14939|granzyme B	X04072|Gzmb|14939|granzyme B
mm9_v1_chr11_-_41814008_41814185	1.95363	EOMES.p2	M86572|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	BC031762|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	M62374|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	NM_008073|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK034338|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm9_v1_chr14_-_66539632_66539775	1.95227	EOMES.p2	AK035740|Scara3|219151|scavenger receptor class A, member 3
mm9_v1_chr2_-_118855090_118855134	1.92995	EOMES.p2	AK040670|Ccdc32|269336|coiled-coil domain containing 32	AK133813|Ccdc32|269336|coiled-coil domain containing 32	AK147152|Ccdc32|269336|coiled-coil domain containing 32	BC023926|Ccdc32|269336|coiled-coil domain containing 32	AK132604|Ccdc32|269336|coiled-coil domain containing 32	NM_199310|Ccdc32|269336|coiled-coil domain containing 32
mm9_v1_chr9_-_7387992_7388025	1.92077	EOMES.p2	AJ278461|Mmp1b|83996|matrix metallopeptidase 1b (interstitial collagenase)	NM_032007|Mmp1b|83996|matrix metallopeptidase 1b (interstitial collagenase)
mm9_v1_chr5_-_137739455_137739483	1.90513	EOMES.p2	AK150310|Srrt|83701|serrate RNA effector molecule homolog (Arabidopsis)	AK152710|Srrt|83701|serrate RNA effector molecule homolog (Arabidopsis)
mm9_v1_chr2_-_91284778_91284823	1.89094	EOMES.p2	BC089006|1110051M20Rik|228356|RIKEN cDNA 1110051M20 gene	AK164320|1110051M20Rik|228356|RIKEN cDNA 1110051M20 gene	BC085239|1110051M20Rik|228356|RIKEN cDNA 1110051M20 gene	AK045977|1110051M20Rik|228356|RIKEN cDNA 1110051M20 gene	NM_175123|1110051M20Rik|228356|RIKEN cDNA 1110051M20 gene	BC032255|1110051M20Rik|228356|RIKEN cDNA 1110051M20 gene
mm9_v1_chr15_-_95358674_95358735	1.8907	EOMES.p2	U59230|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr1_+_174271397_174271531	1.88241	EOMES.p2	BC099932|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10	AK044640|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10	AB039879|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10	BC141088|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10	AF322631|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10
mm9_v1_chr7_+_4416336_4416462	1.87948	EOMES.p2	AK009930|Eps8l1|67425|EPS8-like 1	AK019490|Eps8l1|67425|EPS8-like 1	NM_026146|Eps8l1|67425|EPS8-like 1	AK014556|Eps8l1|67425|EPS8-like 1	BC100383|Eps8l1|67425|EPS8-like 1
mm9_v1_chr4_-_34830178_34830200	1.8738	EOMES.p2	AK017652|Zfp292|30046|zinc finger protein 292	AK018067|Zfp292|30046|zinc finger protein 292	NM_013889|Zfp292|30046|zinc finger protein 292	BC036997|Zfp292|30046|zinc finger protein 292
mm9_v1_chr4_+_106721017_106721031	1.86933	EOMES.p2	AK144320|Ssbp3|72475|single-stranded DNA binding protein 3
mm9_v1_chr8_-_86671651_86671718	1.86464	EOMES.p2	BC016188|Cc2d1a|212139|coiled-coil and C2 domain containing 1A	NM_145970|Cc2d1a|212139|coiled-coil and C2 domain containing 1A
mm9_v1_chr4_+_84530230_84530239	1.85752	EOMES.p2	NM_175275|Cntln|338349|centlein, centrosomal protein	NM_177385|Cntln|338349|centlein, centrosomal protein
mm9_v1_chr10_+_118891074_118891089	1.84836	EOMES.p2	BC072632|Grip1|74053|glutamate receptor interacting protein 1
mm9_v1_chr10_+_7552260_7552267	1.84666	EOMES.p2	AK052806|Zc3h12d|237256|zinc finger CCCH type containing 12D	NM_172785|Zc3h12d|237256|zinc finger CCCH type containing 12D
mm9_v1_chrX_+_156278399_156278494	1.84044	EOMES.p2	AK028299|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_001135728|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr11_-_87639611_87639615	1.83378	EOMES.p2	BC016212|Lpo|76113|lactoperoxidase	NM_080420|Lpo|76113|lactoperoxidase
mm9_v1_chr2_+_71819264_71819343	1.83346	EOMES.p2	AK220281|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AB021132|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AK161934|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AK017479|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AF115480|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	BC139822|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	NM_019688|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4
mm9_v1_chr11_-_115560691_115560842	1.83124	EOMES.p2	AK077750|Grb2|14784|growth factor receptor bound protein 2	AK079087|Grb2|14784|growth factor receptor bound protein 2	AK153557|Grb2|14784|growth factor receptor bound protein 2
mm9_v1_chr8_+_14095884_14096088	1.81369	EOMES.p2	BC118969|Dlgap2|244310|discs, large (Drosophila) homolog-associated protein 2
mm9_v1_chr19_+_8876985_8877044	1.80965	EOMES.p2	AK142256|Zbtb3|75291|zinc finger and BTB domain containing 3	NM_133759|Zbtb3|75291|zinc finger and BTB domain containing 3	AK049258|Zbtb3|75291|zinc finger and BTB domain containing 3	BC119186|Zbtb3|75291|zinc finger and BTB domain containing 3	BC119188|Zbtb3|75291|zinc finger and BTB domain containing 3	NM_001098237|Zbtb3|75291|zinc finger and BTB domain containing 3	BC012410|Zbtb3|75291|zinc finger and BTB domain containing 3
mm9_v1_chr10_+_57504720_57504814	1.79339	EOMES.p2	AJ870970|Fabp7|12140|fatty acid binding protein 7, brain	AK002955|Fabp7|12140|fatty acid binding protein 7, brain	AK021271|Fabp7|12140|fatty acid binding protein 7, brain	NM_021272|Fabp7|12140|fatty acid binding protein 7, brain	BC057090|Fabp7|12140|fatty acid binding protein 7, brain	BC055280|Fabp7|12140|fatty acid binding protein 7, brain	S69799|Fabp7|12140|fatty acid binding protein 7, brain	CT010401|Fabp7|12140|fatty acid binding protein 7, brain
mm9_v1_chr3_+_96400524_96400617	1.79137	EOMES.p2	NM_001024851|Ankrd34a|545554|ankyrin repeat domain 34A	BC052924|Ankrd34a|545554|ankyrin repeat domain 34A
mm9_v1_chr2_-_29980091_29980130	1.78627	EOMES.p2	AK032153|Zer1|227693|zer-1 homolog (C. elegans)	AK029290|Zer1|227693|zer-1 homolog (C. elegans)
mm9_v1_chr2_+_121115337_121115465	1.78003	EOMES.p2	AF182213|Mtap1a|17754|microtubule-associated protein 1 A	NM_032393|Mtap1a|17754|microtubule-associated protein 1 A	AK044057|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr9_+_86910371_86910467	1.7769	EOMES.p2	AB212223|Ripply2|382089|ripply2 homolog (zebrafish)	NM_001037907|Ripply2|382089|ripply2 homolog (zebrafish)	AK081203|Ripply2|382089|ripply2 homolog (zebrafish)
mm9_v1_chr9_-_112090150_112090479	1.77395	EOMES.p2	BC128376|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AF324451|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_033264|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK159004|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK002950|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	BC027107|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK160860|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177615|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177620|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_028755|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chrX_+_7496899_7497045	1.77203	EOMES.p2	AF181560|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor	NM_013892|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor	AF293356|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor	AK076137|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor	AK002969|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor	BC012263|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor
mm9_v1_chr14_-_45838944_45839057	1.75807	EOMES.p2	BC052488|Txndc16|70561|thioredoxin domain containing 16	AK017582|Txndc16|70561|thioredoxin domain containing 16	AK034025|Txndc16|70561|thioredoxin domain containing 16
mm9_v1_chr16_+_5884885_5884885	1.75764	EOMES.p2	BC053009|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	NM_021477|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr17_-_28536455_28536544	1.75086	EOMES.p2	AK199818|Fkbp5|14229|FK506 binding protein 5
mm9_v1_chr1_-_173582969_173583167	1.73205	EOMES.p2	AK016183|Slamf7|75345|SLAM family member 7	AK030135|Slamf7|75345|SLAM family member 7	AK030148|Slamf7|75345|SLAM family member 7	NM_144539|Slamf7|75345|SLAM family member 7
mm9_v1_chr9_-_99610427_99610465	1.72091	EOMES.p2	AF349450|Cldn18|56492|claudin 18	AF221068|Cldn18|56492|claudin 18
mm9_v1_chr5_+_137437946_137437998	1.70166	EOMES.p2	NM_025562|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	AK008078|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	AK008323|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	BC010783|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	AK004479|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	AK004917|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	AK008916|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)
mm9_v1_chr17_+_31091623_31091627	1.69986	EOMES.p2	AY771616|Umodl1|52020|uromodulin-like 1	AY771617|Umodl1|52020|uromodulin-like 1	AY771618|Umodl1|52020|uromodulin-like 1	BC051427|Umodl1|52020|uromodulin-like 1	NM_177465|Umodl1|52020|uromodulin-like 1
mm9_v1_chr11_-_3245718_3245858	1.69193	EOMES.p2	AK038530|Limk2|16886|LIM motif-containing protein kinase 2
mm9_v1_chr2_+_154083589_154083614	1.68413	EOMES.p2	AK029377|4833413D08Rik|71425|RIKEN cDNA 4833413D08 gene	BC080814|4833413D08Rik|71425|RIKEN cDNA 4833413D08 gene	BC047134|4833413D08Rik|71425|RIKEN cDNA 4833413D08 gene	NM_175167|4833413D08Rik|71425|RIKEN cDNA 4833413D08 gene
mm9_v1_chr2_+_164793698_164793753	1.6796	EOMES.p2	AK165769|Slc12a5|57138|solute carrier family 12, member 5	AK122460|Slc12a5|57138|solute carrier family 12, member 5
mm9_v1_chr13_+_94077988_94077988	1.67943	EOMES.p2	AY137385|Homer1|26556|homer homolog 1 (Drosophila)	NM_152134|Homer1|26556|homer homolog 1 (Drosophila)
mm9_v1_chr14_-_56704033_56704109	1.66458	EOMES.p2	NM_008572|Mcpt8|17231|mast cell protease 8	X78545|Mcpt8|17231|mast cell protease 8	AK136485|Mcpt8|17231|mast cell protease 8	BC120607|Mcpt8|17231|mast cell protease 8	BC119342|Mcpt8|17231|mast cell protease 8	BC144934|Mcpt8|17231|mast cell protease 8
mm9_v1_chr17_-_57163687_57163784	1.65862	EOMES.p2	BC064454|Khsrp|16549|KH-type splicing regulatory protein
mm9_v1_chr9_+_7464140_7464186	1.6576	EOMES.p2	AK049552|Mmp1a|83995|matrix metallopeptidase 1a (interstitial collagenase)	BC117756|Mmp1a|83995|matrix metallopeptidase 1a (interstitial collagenase)	NM_032006|Mmp1a|83995|matrix metallopeptidase 1a (interstitial collagenase)	AJ278462|Mmp1a|83995|matrix metallopeptidase 1a (interstitial collagenase)
mm9_v1_chr3_-_146432922_146432972	1.638	EOMES.p2	AK139419|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr14_-_70577478_70577492	1.62917	EOMES.p2	BC024556|Pdlim2|213019|PDZ and LIM domain 2	NM_145978|Pdlim2|213019|PDZ and LIM domain 2
mm9_v1_chrX_+_140100287_140100287	1.62091	EOMES.p2	NM_001195049|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	U39738|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr7_-_52622167_52622179	1.60528	EOMES.p2	AB516303|Ppfia3|76787|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
mm9_v1_chr1_-_52714729_52714742	1.60228	EOMES.p2	BC016598|Mfsd6|98682|major facilitator superfamily domain containing 6
mm9_v1_chr11_+_95198329_95198359	1.60145	EOMES.p2	AK077747|Fam117a|215512|family with sequence similarity 117, memberA	AK143632|Fam117a|215512|family with sequence similarity 117, memberA	AK165378|Fam117a|215512|family with sequence similarity 117, memberA	AK167417|Fam117a|215512|family with sequence similarity 117, memberA	NM_172543|Fam117a|215512|family with sequence similarity 117, memberA	BC055690|Fam117a|215512|family with sequence similarity 117, memberA
mm9_v1_chr2_-_9970235_9970261	1.59752	EOMES.p2	NM_027748|Taf3|209361|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK154372|Taf3|209361|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr15_+_74346853_74346867	1.58431	EOMES.p2	AK147600|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr1_+_61034757_61034802	1.58274	EOMES.p2	NM_017480|Icos|54167|inducible T-cell co-stimulator	AK030827|Icos|54167|inducible T-cell co-stimulator	AJ250559|Icos|54167|inducible T-cell co-stimulator	BC034852|Icos|54167|inducible T-cell co-stimulator	AB023132|Icos|54167|inducible T-cell co-stimulator	AF257230|Icos|54167|inducible T-cell co-stimulator	AF216748|Icos|54167|inducible T-cell co-stimulator
mm9_v1_chr11_-_30119771_30119771	1.57767	EOMES.p2	NM_175836|Spnb2|20742|spectrin beta 2
mm9_v1_chr17_+_31345010_31345055	1.57538	EOMES.p2	NM_177823|Ubash3a|328795|ubiquitin associated and SH3 domain containing, A	BC027561|Ubash3a|328795|ubiquitin associated and SH3 domain containing, A	AK041690|Ubash3a|328795|ubiquitin associated and SH3 domain containing, A	AK040572|Ubash3a|328795|ubiquitin associated and SH3 domain containing, A	AK169696|Ubash3a|328795|ubiquitin associated and SH3 domain containing, A
mm9_v1_chr8_+_121970569_121970618	1.56787	EOMES.p2	AF411253|Necab2|117148|N-terminal EF-hand calcium binding protein 2	NM_054095|Necab2|117148|N-terminal EF-hand calcium binding protein 2
mm9_v1_chr18_+_23468585_23468619	1.56669	EOMES.p2	AK147279|Dtna|13527|dystrobrevin alpha
mm9_v1_chr9_-_107980133_107980133	1.55458	EOMES.p2	AY744153|Rnf123|84585|ring finger protein 123	NM_032543|Rnf123|84585|ring finger protein 123
mm9_v1_chr2_-_6805937_6806041	1.55127	EOMES.p2	AK042749|Celf2|14007|CUGBP, Elav-like family member 2	AK164112|Celf2|14007|CUGBP, Elav-like family member 2	AK052102|Celf2|14007|CUGBP, Elav-like family member 2	AK135166|Celf2|14007|CUGBP, Elav-like family member 2	BC026856|Celf2|14007|CUGBP, Elav-like family member 2	AF090697|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110228|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160293|Celf2|14007|CUGBP, Elav-like family member 2	NM_010160|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr13_-_55650696_55650820	1.5496	EOMES.p2	BC023015|Fam193b|212483|family with sequence similarity 193, member B	BC021381|Fam193b|212483|family with sequence similarity 193, member B
mm9_v1_chr12_-_104480335_104480355	1.54794	EOMES.p2	BC145454|Prima1|170952|proline rich membrane anchor 1	BC171927|Prima1|170952|proline rich membrane anchor 1	BC171928|Prima1|170952|proline rich membrane anchor 1	BC171929|Prima1|170952|proline rich membrane anchor 1	BC134395|Prima1|170952|proline rich membrane anchor 1	AK140034|Prima1|170952|proline rich membrane anchor 1	AY043275|Prima1|170952|proline rich membrane anchor 1	AY225515|Prima1|170952|proline rich membrane anchor 1	NM_133364|Prima1|170952|proline rich membrane anchor 1
mm9_v1_chrX_-_148776674_148776969	1.54704	EOMES.p2	BC004006|Tspyl2|52808|TSPY-like 2	BC043694|Tspyl2|52808|TSPY-like 2	AY273809|Tspyl2|52808|TSPY-like 2	BC054393|Tspyl2|52808|TSPY-like 2	AK018700|Tspyl2|52808|TSPY-like 2
mm9_v1_chr16_-_3872273_3872373	1.53483	EOMES.p2	AK016727|Zfp597|71063|zinc finger protein 597	NM_001033159|Zfp597|71063|zinc finger protein 597
mm9_v1_chr6_-_122287014_122287032	1.52319	EOMES.p2	U63386|Phc1|13619|polyhomeotic-like 1 (Drosophila)	NM_001042623|Phc1|13619|polyhomeotic-like 1 (Drosophila)	NM_007905|Phc1|13619|polyhomeotic-like 1 (Drosophila)
mm9_v1_chr13_+_54472806_54472829	1.52163	EOMES.p2	BC058395|Cplx2|12890|complexin 2
mm9_v1_chr5_-_31597792_31598351	1.48995	EOMES.p2	BC139278|Fndc4|64339|fibronectin type III domain containing 4	BC139292|Fndc4|64339|fibronectin type III domain containing 4	AK018154|Fndc4|64339|fibronectin type III domain containing 4	AK013203|Fndc4|64339|fibronectin type III domain containing 4	AK163183|Fndc4|64339|fibronectin type III domain containing 4	NM_022424|Fndc4|64339|fibronectin type III domain containing 4
mm9_v1_chr14_-_52948344_52948436	1.48659	EOMES.p2	NM_015772|Sall2|50524|sal-like 2 (Drosophila)	AJ007396|Sall2|50524|sal-like 2 (Drosophila)
mm9_v1_chr7_-_133558344_133558387	1.47951	EOMES.p2	AK172008|Cd19|12478|CD19 antigen	AK089835|Cd19|12478|CD19 antigen	AK163608|Cd19|12478|CD19 antigen	NM_009844|Cd19|12478|CD19 antigen	AK156125|Cd19|12478|CD19 antigen
mm9_v1_chr5_-_123183255_123183351	1.46898	EOMES.p2	AK050846|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chr14_+_56590264_56590269	1.46352	EOMES.p2	AF361939|Cma2|545055|chymase 2, mast cell	NM_001024714|Cma2|545055|chymase 2, mast cell	BC139236|Cma2|545055|chymase 2, mast cell	BC139237|Cma2|545055|chymase 2, mast cell
mm9_v1_chr11_-_58996318_58996331	1.44966	EOMES.p2	AK046421|Gjc2|118454|gap junction protein, gamma 2	NM_175452|Gjc2|118454|gap junction protein, gamma 2
mm9_v1_chr1_-_42751652_42751673	1.44612	EOMES.p2	BC094545|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	AK011437|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	AK019154|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	AK048630|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr11_+_98629709_98629729	1.43977	EOMES.p2	
mm9_v1_chrX_+_53708015_53708070	1.43975	EOMES.p2	NM_172779|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	AK031945|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	BC051161|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	AK083942|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	AK160627|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
mm9_v1_chr6_+_115085096_115085107	1.43948	EOMES.p2	BC066004|Syn2|20965|synapsin II	BC085129|Syn2|20965|synapsin II
mm9_v1_chr18_-_35808986_35809020	1.43815	EOMES.p2	GQ477351|2010001M09Rik|69816|RIKEN cDNA 2010001M09 gene	BC064044|2010001M09Rik|69816|RIKEN cDNA 2010001M09 gene	AK008016|2010001M09Rik|69816|RIKEN cDNA 2010001M09 gene	NM_027222|2010001M09Rik|69816|RIKEN cDNA 2010001M09 gene
mm9_v1_chr15_+_91991704_91991862	1.43162	EOMES.p2	NM_001159647|Cntn1|12805|contactin 1	BC066864|Cntn1|12805|contactin 1
mm9_v1_chr16_-_36784864_36785047	1.42648	EOMES.p2	BC018335|Slc15a2|57738|solute carrier family 15 (H+/peptide transporter), member 2	AK128939|Slc15a2|57738|solute carrier family 15 (H+/peptide transporter), member 2	AK018393|Slc15a2|57738|solute carrier family 15 (H+/peptide transporter), member 2	BC138627|Slc15a2|57738|solute carrier family 15 (H+/peptide transporter), member 2	BC138628|Slc15a2|57738|solute carrier family 15 (H+/peptide transporter), member 2	BC051199|Slc15a2|57738|solute carrier family 15 (H+/peptide transporter), member 2	AF111811|Slc15a2|57738|solute carrier family 15 (H+/peptide transporter), member 2	NM_001145899|Slc15a2|57738|solute carrier family 15 (H+/peptide transporter), member 2	NM_021301|Slc15a2|57738|solute carrier family 15 (H+/peptide transporter), member 2
mm9_v1_chr11_-_41996141_41996431	1.42182	EOMES.p2	AK141596|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	AK034095|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	NM_010250|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm9_v1_chr11_-_49488485_49488495	1.41972	EOMES.p2	AK039164|Cnot6|104625|CCR4-NOT transcription complex, subunit 6	AK169707|Cnot6|104625|CCR4-NOT transcription complex, subunit 6
mm9_v1_chr4_+_126846429_126846514	1.4166	EOMES.p2	BC057615|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3	NM_198618|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3
mm9_v1_chr12_+_33987379_33987464	1.41206	EOMES.p2	NM_001033436|Atxn7l1|380753|ataxin 7-like 1	AK156016|Atxn7l1|380753|ataxin 7-like 1	BC147479|Atxn7l1|380753|ataxin 7-like 1	BC147483|Atxn7l1|380753|ataxin 7-like 1
mm9_v1_chr16_+_96422319_96422322	1.4116	EOMES.p2	AK017399|Sh3bgr|50795|SH3-binding domain glutamic acid-rich protein
mm9_v1_chr4_-_149575220_149575330	1.41025	EOMES.p2	BC018582|Car6|12353|carbonic anhydrase 6	BC036270|Car6|12353|carbonic anhydrase 6	BC049973|Car6|12353|carbonic anhydrase 6	BC039657|Car6|12353|carbonic anhydrase 6	BC055437|Car6|12353|carbonic anhydrase 6	AK161216|Car6|12353|carbonic anhydrase 6	AK132599|Car6|12353|carbonic anhydrase 6	NM_009802|Car6|12353|carbonic anhydrase 6	AF079835|Car6|12353|carbonic anhydrase 6	BC006726|Car6|12353|carbonic anhydrase 6
mm9_v1_chr8_+_108404773_108404850	1.40902	EOMES.p2	AK152963|Edc4|234699|enhancer of mRNA decapping 4	AK146527|Edc4|234699|enhancer of mRNA decapping 4	BC053081|Edc4|234699|enhancer of mRNA decapping 4	NM_181594|Edc4|234699|enhancer of mRNA decapping 4
mm9_v1_chr2_+_109514856_109514856	1.39128	EOMES.p2	AY057908|Bdnf|12064|brain derived neurotrophic factor	EF125669|Bdnf|12064|brain derived neurotrophic factor	NM_007540|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr13_+_54605152_54605165	1.39039	EOMES.p2	NM_176987|4732471D19Rik|319719|RIKEN cDNA 4732471D19 gene
mm9_v1_chr7_+_148514018_148514031	1.3845	EOMES.p2	AK017460|Tmem80|71448|transmembrane protein 80	AK134821|Tmem80|71448|transmembrane protein 80	NM_001141950|Tmem80|71448|transmembrane protein 80	NM_027797|Tmem80|71448|transmembrane protein 80
mm9_v1_chr3_+_87650676_87650676	1.3829	EOMES.p2	AF203343|Sh2d2a|27371|SH2 domain protein 2A	NM_001025571|Sh2d2a|27371|SH2 domain protein 2A	NM_021309|Sh2d2a|27371|SH2 domain protein 2A
mm9_v1_chr17_+_26339883_26339926	1.37643	EOMES.p2	AK080707|Rgs11|50782|regulator of G-protein signaling 11	NM_001081069|Rgs11|50782|regulator of G-protein signaling 11	BC049910|Rgs11|50782|regulator of G-protein signaling 11
mm9_v1_chr8_-_73982014_73982139	1.36528	EOMES.p2	AK185006|Abhd8|64296|abhydrolase domain containing 8	AK178673|Abhd8|64296|abhydrolase domain containing 8	AK179035|Abhd8|64296|abhydrolase domain containing 8	AK184390|Abhd8|64296|abhydrolase domain containing 8	AK187254|Abhd8|64296|abhydrolase domain containing 8	AK207815|Abhd8|64296|abhydrolase domain containing 8	AK209444|Abhd8|64296|abhydrolase domain containing 8	AK181691|Abhd8|64296|abhydrolase domain containing 8	AK185637|Abhd8|64296|abhydrolase domain containing 8	AK189463|Abhd8|64296|abhydrolase domain containing 8	AK181236|Abhd8|64296|abhydrolase domain containing 8
mm9_v1_chr13_-_46788898_46788932	1.35587	EOMES.p2	
mm9_v1_chrX_-_148777014_148777028	1.35438	EOMES.p2	NM_029836|Tspyl2|52808|TSPY-like 2
mm9_v1_chr10_+_127848744_127848813	1.35214	EOMES.p2	AK031657|Rnf41|67588|ring finger protein 41	AK034551|Rnf41|67588|ring finger protein 41	AK044103|Rnf41|67588|ring finger protein 41	AK032848|Rnf41|67588|ring finger protein 41	AK028551|Rnf41|67588|ring finger protein 41	AK077466|Rnf41|67588|ring finger protein 41
mm9_v1_chr12_-_5091185_5091230	1.35168	EOMES.p2	AK039195|Klhl29|208439|kelch-like 29 (Drosophila)
mm9_v1_chr1_-_172857670_172857713	1.34802	EOMES.p2	AF329487|Fcrla|98752|Fc receptor-like A	AF426462|Fcrla|98752|Fc receptor-like A	AK041572|Fcrla|98752|Fc receptor-like A	AF531424|Fcrla|98752|Fc receptor-like A	AK172370|Fcrla|98752|Fc receptor-like A	BC064708|Fcrla|98752|Fc receptor-like A	NM_001160215|Fcrla|98752|Fc receptor-like A	NM_145141|Fcrla|98752|Fc receptor-like A
mm9_v1_chr10_-_42893894_42894226	1.33762	EOMES.p2	DQ157775|Sobp|109205|sine oculis-binding protein homolog (Drosophila)	BC057055|Sobp|109205|sine oculis-binding protein homolog (Drosophila)
mm9_v1_chr15_+_100766701_100766755	1.32849	EOMES.p2	NM_011323|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	U26707|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AF049617|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr11_-_69419330_69419349	1.32807	EOMES.p2	BC042467|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide
mm9_v1_chr14_+_27399015_27399092	1.32266	EOMES.p2	AK054295|Fam116a|211922|family with sequence similarity 116, member A	NM_001134465|Fam116a|211922|family with sequence similarity 116, member A	NM_145969|Fam116a|211922|family with sequence similarity 116, member A	AK132219|Fam116a|211922|family with sequence similarity 116, member A	AK131163|Fam116a|211922|family with sequence similarity 116, member A	BC025603|Fam116a|211922|family with sequence similarity 116, member A	AK161908|Fam116a|211922|family with sequence similarity 116, member A	AK054197|Fam116a|211922|family with sequence similarity 116, member A
mm9_v1_chr12_-_32319353_32319551	1.29365	EOMES.p2	BC003303|Bcap29|12033|B-cell receptor-associated protein 29	BC021661|Bcap29|12033|B-cell receptor-associated protein 29	NM_007530|Bcap29|12033|B-cell receptor-associated protein 29	AK090068|Bcap29|12033|B-cell receptor-associated protein 29	AK144754|Bcap29|12033|B-cell receptor-associated protein 29	NM_001164090|Bcap29|12033|B-cell receptor-associated protein 29
mm9_v1_chr6_+_58781846_58781891	1.29239	EOMES.p2	AK017531|Herc3|73998|hect domain and RLD 3
mm9_v1_chr7_+_4289325_4289370	1.28004	EOMES.p2	AK079401|Ncr1|17086|natural cytotoxicity triggering receptor 1	BC115364|Ncr1|17086|natural cytotoxicity triggering receptor 1	NM_010746|Ncr1|17086|natural cytotoxicity triggering receptor 1	AJ223765|Ncr1|17086|natural cytotoxicity triggering receptor 1	BC042788|Ncr1|17086|natural cytotoxicity triggering receptor 1	AK172251|Ncr1|17086|natural cytotoxicity triggering receptor 1
mm9_v1_chr19_+_36629213_36629269	1.27922	EOMES.p2	AK029549|Hectd2|226098|HECT domain containing 2
mm9_v1_chr18_-_15562126_15562266	1.27863	EOMES.p2	AK044074|Aqp4|11829|aquaporin 4	BC024526|Aqp4|11829|aquaporin 4	NM_009700|Aqp4|11829|aquaporin 4	AF469168|Aqp4|11829|aquaporin 4
mm9_v1_chr9_-_107516538_107516684	1.26997	EOMES.p2	
mm9_v1_chrX_-_22797942_22797952	1.26076	EOMES.p2	AK013399|Klhl13|67455|kelch-like 13 (Drosophila)
mm9_v1_chr14_+_57506630_57506655	1.25625	EOMES.p2	NM_029498|Zmym2|76007|zinc finger, MYM-type 2	BC141403|Zmym2|76007|zinc finger, MYM-type 2
mm9_v1_chr2_-_30033944_30034014	1.25385	EOMES.p2	AK044983|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK036945|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK147162|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK046148|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	NM_172660|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed
mm9_v1_chr6_-_125186982_125187044	1.24863	EOMES.p2	AK153895|Cd27|21940|CD27 antigen	BC139125|Cd27|21940|CD27 antigen	BC139126|Cd27|21940|CD27 antigen	BC171931|Cd27|21940|CD27 antigen	AK137770|Cd27|21940|CD27 antigen	AK154005|Cd27|21940|CD27 antigen	NM_001033126|Cd27|21940|CD27 antigen	NM_001042564|Cd27|21940|CD27 antigen
mm9_v1_chr6_+_48689045_48689097	1.24687	EOMES.p2	NM_008376|Gimap1|16205|GTPase, IMAP family member 1	NM_175860|Gimap1|16205|GTPase, IMAP family member 1	AK156732|Gimap1|16205|GTPase, IMAP family member 1	BC132601|Gimap1|16205|GTPase, IMAP family member 1	BC132603|Gimap1|16205|GTPase, IMAP family member 1	AK169133|Gimap1|16205|GTPase, IMAP family member 1
mm9_v1_chr1_-_166371638_166371729	1.24287	EOMES.p2	AK162938|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr15_+_12082671_12082674	1.2367	EOMES.p2	AK158938|Zfr|22763|zinc finger RNA binding protein
mm9_v1_chr3_-_117063317_117063389	1.23449	EOMES.p2	BC082323|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	BC137701|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	BC137702|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AK129149|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm9_v1_chr1_+_60466620_60466646	1.23372	EOMES.p2	AK081803|Abi2|329165|abl-interactor 2	BC056345|Abi2|329165|abl-interactor 2
mm9_v1_chr11_-_120900678_120900745	1.23261	EOMES.p2	CT010368|Cd7|12516|CD7 antigen	BC024376|Cd7|12516|CD7 antigen	D10329|Cd7|12516|CD7 antigen	NM_009854|Cd7|12516|CD7 antigen	AK136444|Cd7|12516|CD7 antigen	AK154339|Cd7|12516|CD7 antigen
mm9_v1_chr5_-_115750940_115750978	1.23223	EOMES.p2	AK002522|Dynll1|56455|dynein light chain LC8-type 1	AK010614|Dynll1|56455|dynein light chain LC8-type 1	AK010685|Dynll1|56455|dynein light chain LC8-type 1	AK013721|Dynll1|56455|dynein light chain LC8-type 1	AK013725|Dynll1|56455|dynein light chain LC8-type 1	AK082923|Dynll1|56455|dynein light chain LC8-type 1	AK147977|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr11_-_102226419_102226465	1.23087	EOMES.p2	M29379|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK010967|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK171808|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	BC053429|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AY296129|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	X02677|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	BC052419|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK172316|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK158453|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK162616|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK172569|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK157833|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK165195|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK165267|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK172103|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK157861|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK158243|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1
mm9_v1_chr1_-_53841997_53842058	1.22959	EOMES.p2	AK029551|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK165291|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AY092028|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK153108|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	BC006579|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK035693|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK076932|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK083332|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	NM_133810|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)
mm9_v1_chr6_-_38075416_38075515	1.22584	EOMES.p2	AK141785|D630045J12Rik|330286|RIKEN cDNA D630045J12 gene
mm9_v1_chr13_-_113971103_113971104	1.21597	EOMES.p2	BC117981|Gzmk|14945|granzyme K	NM_008196|Gzmk|14945|granzyme K
mm9_v1_chr18_-_9995729_9995838	1.20608	EOMES.p2	AK206781|Usp14|59025|ubiquitin specific peptidase 14	AK209109|Usp14|59025|ubiquitin specific peptidase 14
mm9_v1_chr3_+_103811134_103811169	1.1985	EOMES.p2	
mm9_v1_chr1_+_60466499_60466554	1.19335	EOMES.p2	BC079646|Abi2|329165|abl-interactor 2
mm9_v1_chr19_+_4003320_4003386	1.18608	EOMES.p2	AK084565|Doc2g|60425|double C2, gamma	BC061104|Doc2g|60425|double C2, gamma	NM_021791|Doc2g|60425|double C2, gamma	AB046665|Doc2g|60425|double C2, gamma
mm9_v1_chr7_+_17428258_17428362	1.1802	EOMES.p2	AK170236|Prkd2|101540|protein kinase D2	BC096444|Prkd2|101540|protein kinase D2	AK170761|Prkd2|101540|protein kinase D2	BC095949|Prkd2|101540|protein kinase D2
mm9_v1_chr7_+_133924996_133925020	1.17826	EOMES.p2	BC140951|Tbx6|21389|T-box 6	NM_011538|Tbx6|21389|T-box 6	U57331|Tbx6|21389|T-box 6	AY654733|Tbx6|21389|T-box 6
mm9_v1_chr1_-_176851918_176851937	1.17693	EOMES.p2	AK161827|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	BC079905|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm9_v1_chr8_-_83263323_83263359	1.17337	EOMES.p2	AK153789|Smarca5|93762|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	BC053069|Smarca5|93762|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	NM_053124|Smarca5|93762|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm9_v1_chr5_+_31495623_31495689	1.17276	EOMES.p2	AK156299|Snx17|266781|sorting nexin 17	BC023732|Snx17|266781|sorting nexin 17	AK077650|Snx17|266781|sorting nexin 17	AK077780|Snx17|266781|sorting nexin 17	BC026571|Snx17|266781|sorting nexin 17	NM_153680|Snx17|266781|sorting nexin 17	AK047265|Snx17|266781|sorting nexin 17	BC029675|Snx17|266781|sorting nexin 17
mm9_v1_chr1_+_83113340_83113380	1.16943	EOMES.p2	AK079862|Ccl20|20297|chemokine (C-C motif) ligand 20	NM_001159738|Ccl20|20297|chemokine (C-C motif) ligand 20	NM_016960|Ccl20|20297|chemokine (C-C motif) ligand 20	AB015136|Ccl20|20297|chemokine (C-C motif) ligand 20	AF053313|Ccl20|20297|chemokine (C-C motif) ligand 20	AF099052|Ccl20|20297|chemokine (C-C motif) ligand 20	BC028504|Ccl20|20297|chemokine (C-C motif) ligand 20	AJ222694|Ccl20|20297|chemokine (C-C motif) ligand 20
mm9_v1_chr4_+_151560168_151560314	1.16727	EOMES.p2	NM_001146057|Acot7|70025|acyl-CoA thioesterase 7	AB088411|Acot7|70025|acyl-CoA thioesterase 7
mm9_v1_chr9_+_32031833_32031859	1.16636	EOMES.p2	NM_177379|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr3_-_75360676_75360744	1.16593	EOMES.p2	AF159368|Pdcd10|56426|programmed cell death 10	AK149182|Pdcd10|56426|programmed cell death 10	BC086778|Pdcd10|56426|programmed cell death 10	AK005594|Pdcd10|56426|programmed cell death 10	AK168857|Pdcd10|56426|programmed cell death 10	AK169689|Pdcd10|56426|programmed cell death 10	BC019650|Pdcd10|56426|programmed cell death 10	AK075926|Pdcd10|56426|programmed cell death 10	NM_019745|Pdcd10|56426|programmed cell death 10	AK160234|Pdcd10|56426|programmed cell death 10	AK137198|Pdcd10|56426|programmed cell death 10
mm9_v1_chr9_-_107191674_107191745	1.16365	EOMES.p2	DQ899946|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	AK087496|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3
mm9_v1_chr9_+_44789868_44790000	1.16343	EOMES.p2	AK042172|Cd3d|12500|CD3 antigen, delta polypeptide	NM_013487|Cd3d|12500|CD3 antigen, delta polypeptide	AK050629|Cd3d|12500|CD3 antigen, delta polypeptide	AK153843|Cd3d|12500|CD3 antigen, delta polypeptide	AK154064|Cd3d|12500|CD3 antigen, delta polypeptide	BC062807|Cd3d|12500|CD3 antigen, delta polypeptide	EF382667|Cd3d|12500|CD3 antigen, delta polypeptide	HM536173|Cd3d|12500|CD3 antigen, delta polypeptide	X02339|Cd3d|12500|CD3 antigen, delta polypeptide
mm9_v1_chr3_-_88893885_88893966	1.16217	EOMES.p2	AK170210|Rusc1|72296|RUN and SH3 domain containing 1	NM_001083808|Rusc1|72296|RUN and SH3 domain containing 1	AK170012|Rusc1|72296|RUN and SH3 domain containing 1
mm9_v1_chr5_+_138188092_138188197	1.15746	EOMES.p2	BC018544|Tsc22d4|78829|TSC22 domain family, member 4	AK144806|Tsc22d4|78829|TSC22 domain family, member 4
mm9_v1_chr15_-_96473193_96473343	1.1568	EOMES.p2	AK162612|Slc38a1|105727|solute carrier family 38, member 1	AK081724|Slc38a1|105727|solute carrier family 38, member 1	NM_001166458|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr14_+_56129440_56129463	1.14272	EOMES.p2	AK134548|Cpne6|12891|copine VI	AK144410|Cpne6|12891|copine VI	BC050766|Cpne6|12891|copine VI
mm9_v1_chr7_-_90803834_90803886	1.14	EOMES.p2	AK083338|Il16|16170|interleukin 16	BC026894|Il16|16170|interleukin 16	AK134007|Il16|16170|interleukin 16
mm9_v1_chr4_-_126645129_126645179	1.13179	EOMES.p2	AK148366|Zmym4|67785|zinc finger, MYM-type 4	NM_001114399|Zmym4|67785|zinc finger, MYM-type 4
mm9_v1_chr1_+_173319048_173319419	1.12178	EOMES.p2	AK147757|Arhgap30|226652|Rho GTPase activating protein 30	NM_001005508|Arhgap30|226652|Rho GTPase activating protein 30	AK156351|Arhgap30|226652|Rho GTPase activating protein 30	AK030911|Arhgap30|226652|Rho GTPase activating protein 30	BC082573|Arhgap30|226652|Rho GTPase activating protein 30	AK031319|Arhgap30|226652|Rho GTPase activating protein 30
mm9_v1_chr18_-_60769648_60769761	1.1212	EOMES.p2	AK129267|Synpo|104027|synaptopodin	AK141564|Synpo|104027|synaptopodin	NM_001109975|Synpo|104027|synaptopodin
mm9_v1_chr8_+_36740640_36740782	1.12015	EOMES.p2	AK010068|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1
mm9_v1_chr8_+_32239179_32239274	1.11216	EOMES.p2	AK004356|Rnf122|68867|ring finger protein 122
mm9_v1_chr2_-_44782719_44782794	1.10879	EOMES.p2	AK028468|Gtdc1|227835|glycosyltransferase-like domain containing 1	AK163943|Gtdc1|227835|glycosyltransferase-like domain containing 1
mm9_v1_chr11_-_83880574_83880586	1.10672	EOMES.p2	AK009744|Dusp14|56405|dual specificity phosphatase 14
mm9_v1_chr13_-_43399540_43399575	1.1043	EOMES.p2	AK147458|Gfod1|328232|glucose-fructose oxidoreductase domain containing 1	NM_001033399|Gfod1|328232|glucose-fructose oxidoreductase domain containing 1
mm9_v1_chr19_-_46107484_46107619	1.10305	EOMES.p2	AK210031|Ldb1|16825|LIM domain binding 1
mm9_v1_chr9_-_99469067_99469110	1.10217	EOMES.p2	AK078280|Armc8|74125|armadillo repeat containing 8	AK083094|Armc8|74125|armadillo repeat containing 8
mm9_v1_chr17_+_56110138_56110224	1.10035	EOMES.p2	BC052026|Shd|20420|src homology 2 domain-containing transforming protein D	BC079574|Shd|20420|src homology 2 domain-containing transforming protein D
mm9_v1_chr6_+_120723785_120723785	1.0968	EOMES.p2	BC116828|Slc25a18|71803|solute carrier family 25 (mitochondrial carrier), member 18	BC137603|Slc25a18|71803|solute carrier family 25 (mitochondrial carrier), member 18	NM_001081048|Slc25a18|71803|solute carrier family 25 (mitochondrial carrier), member 18
mm9_v1_chr10_+_5057034_5057137	1.09537	EOMES.p2	
mm9_v1_chr8_-_119098475_119098517	1.09151	EOMES.p2	
mm9_v1_chr3_+_88987108_88987146	1.09113	EOMES.p2	BC068123|Fam189b|68521|family with sequence similarity 189, member B	BC088990|Fam189b|68521|family with sequence similarity 189, member B	NM_001014995|Fam189b|68521|family with sequence similarity 189, member B
mm9_v1_chr11_-_51799215_51799347	1.08603	EOMES.p2	AK190260|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)
mm9_v1_chr15_-_95359136_95359208	1.08257	EOMES.p2	NM_016743|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr15_-_48623520_48623540	1.08118	EOMES.p2	AK140264|Csmd3|239420|CUB and Sushi multiple domains 3	AK163122|Csmd3|239420|CUB and Sushi multiple domains 3	NM_001081391|Csmd3|239420|CUB and Sushi multiple domains 3
mm9_v1_chr17_+_56109922_56110011	1.07585	EOMES.p2	AK164639|Shd|20420|src homology 2 domain-containing transforming protein D	BC103798|Shd|20420|src homology 2 domain-containing transforming protein D
mm9_v1_chr7_-_116879475_116879535	1.07468	EOMES.p2	AK194605|Tmem9b|56786|TMEM9 domain family, member B
mm9_v1_chr8_+_12915892_12915957	1.07436	EOMES.p2	NM_178076|Mcf2l|17207|mcf.2 transforming sequence-like	AK082849|Mcf2l|17207|mcf.2 transforming sequence-like	AK048898|Mcf2l|17207|mcf.2 transforming sequence-like	BC058622|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr8_+_86424565_86424613	1.0711	EOMES.p2	BC085138|Lphn1|330814|latrophilin 1
mm9_v1_chr9_-_99610481_99610525	1.07092	EOMES.p2	NM_001194922|Cldn18|56492|claudin 18	NM_019815|Cldn18|56492|claudin 18
mm9_v1_chr15_-_90764873_90764944	1.07032	EOMES.p2	AK052821|Kif21a|16564|kinesin family member 21A	AK047208|Kif21a|16564|kinesin family member 21A
mm9_v1_chr9_+_15043658_15043696	1.06828	EOMES.p2	AK161045|2200002K05Rik|69137|RIKEN cDNA 2200002K05 gene
mm9_v1_chr18_+_35721811_35721848	1.06661	EOMES.p2	NM_010771|Matr3|17184|matrin 3
mm9_v1_chr11_+_120466611_120466690	1.06592	EOMES.p2	AK003684|Anapc11|66156|anaphase promoting complex subunit 11
mm9_v1_chr8_+_23348971_23348971	1.06315	EOMES.p2	AB039946|Thsd1|56229|thrombospondin, type I, domain 1	BC119603|Thsd1|56229|thrombospondin, type I, domain 1	NM_019576|Thsd1|56229|thrombospondin, type I, domain 1
mm9_v1_chr3_+_90070455_90070469	1.05522	EOMES.p2	NM_201407|Dennd4b|229541|DENN/MADD domain containing 4B	AK155638|Dennd4b|229541|DENN/MADD domain containing 4B
mm9_v1_chr4_+_138387771_138387792	1.05453	EOMES.p2	AK131857|Pla2g2a|18780|phospholipase A2, group IIA (platelets, synovial fluid)	X74266|Pla2g2a|18780|phospholipase A2, group IIA (platelets, synovial fluid)	BC045156|Pla2g2a|18780|phospholipase A2, group IIA (platelets, synovial fluid)	NM_001082531|Pla2g2a|18780|phospholipase A2, group IIA (platelets, synovial fluid)	U28244|Pla2g2a|18780|phospholipase A2, group IIA (platelets, synovial fluid)
mm9_v1_chr14_-_45839064_45839076	1.05271	EOMES.p2	AK039945|Txndc16|70561|thioredoxin domain containing 16	AK046466|Txndc16|70561|thioredoxin domain containing 16	NM_172597|Txndc16|70561|thioredoxin domain containing 16	BC060101|Txndc16|70561|thioredoxin domain containing 16	AK164111|Txndc16|70561|thioredoxin domain containing 16
mm9_v1_chr1_+_75479559_75479687	1.05122	EOMES.p2	BC042776|Tmem198|319998|transmembrane protein 198	BC046546|Tmem198|319998|transmembrane protein 198
mm9_v1_chr9_+_32072243_32072249	1.05061	EOMES.p2	AK014385|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr16_-_50732795_50732886	1.03857	EOMES.p2	AK019912|5330426P16Rik|68190|RIKEN cDNA 5330426P16 gene	AK040285|5330426P16Rik|68190|RIKEN cDNA 5330426P16 gene	AK035047|5330426P16Rik|68190|RIKEN cDNA 5330426P16 gene	AK045752|5330426P16Rik|68190|RIKEN cDNA 5330426P16 gene	AK137010|5330426P16Rik|68190|RIKEN cDNA 5330426P16 gene	AK003970|5330426P16Rik|68190|RIKEN cDNA 5330426P16 gene	AK052569|5330426P16Rik|68190|RIKEN cDNA 5330426P16 gene	AK151508|5330426P16Rik|68190|RIKEN cDNA 5330426P16 gene
mm9_v1_chr10_+_41170163_41170242	1.03447	EOMES.p2	AK146986|Zbtb24|268294|zinc finger and BTB domain containing 24	AK154467|Zbtb24|268294|zinc finger and BTB domain containing 24	AY210402|Zbtb24|268294|zinc finger and BTB domain containing 24	BC050933|Zbtb24|268294|zinc finger and BTB domain containing 24	NM_153398|Zbtb24|268294|zinc finger and BTB domain containing 24	AK054097|Zbtb24|268294|zinc finger and BTB domain containing 24	AK169260|Zbtb24|268294|zinc finger and BTB domain containing 24	BC055367|Zbtb24|268294|zinc finger and BTB domain containing 24	AF263010|Zbtb24|268294|zinc finger and BTB domain containing 24
mm9_v1_chr2_-_77541328_77541435	1.03351	EOMES.p2	BC048543|Zfp385b|241494|zinc finger protein 385B	NM_001113399|Zfp385b|241494|zinc finger protein 385B	AK047859|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr6_-_90612275_90612375	1.03237	EOMES.p2	AK044711|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr17_-_80689434_80689517	1.03011	EOMES.p2	BC079618|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	BC066091|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	BC065169|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	AK042947|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
mm9_v1_chr5_+_129242120_129242155	1.02809	EOMES.p2	AF438405|Piwil1|57749|piwi-like homolog 1 (Drosophila)	NM_021311|Piwil1|57749|piwi-like homolog 1 (Drosophila)	AB032604|Piwil1|57749|piwi-like homolog 1 (Drosophila)
mm9_v1_chr1_+_74589461_74589571	1.025	EOMES.p2	NM_001081456|Plcd4|18802|phospholipase C, delta 4	AK140231|Plcd4|18802|phospholipase C, delta 4	AK039149|Plcd4|18802|phospholipase C, delta 4	BC066156|Plcd4|18802|phospholipase C, delta 4
mm9_v1_chr12_-_76697214_76697220	1.01888	EOMES.p2	AK078894|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	AK132432|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform
mm9_v1_chr3_-_94386449_94386477	1.01754	EOMES.p2	AK122296|Snx27|76742|sorting nexin family member 27	BC053495|Snx27|76742|sorting nexin family member 27
mm9_v1_chr13_-_55672471_55672500	1.01559	EOMES.p2	AK155237|Fam193b|212483|family with sequence similarity 193, member B	NM_145382|Fam193b|212483|family with sequence similarity 193, member B
mm9_v1_chr1_+_89516886_89517022	1.00704	EOMES.p2	NM_001110192|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	NM_001110193|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	NM_010566|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	U39203|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	AK143560|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	U52044|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	AK162401|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	AF228679|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	U51742|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	AF125996|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	BC108328|Inpp5d|16331|inositol polyphosphate-5-phosphatase D
mm9_v1_chr4_-_11892848_11892892	1.003	EOMES.p2	BC048372|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1	NM_001098231|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1
mm9_v1_chr11_-_78020896_78021039	1.00181	EOMES.p2	AK207208|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)
mm9_v1_chr8_+_26750755_26750755	0.99706	EOMES.p2	NM_001081269|Whsc1l1|234135|Wolf-Hirschhorn syndrome candidate 1-like 1 (human)
mm9_v1_chr4_+_154353269_154353401	0.993691	EOMES.p2	BC027074|Pank4|269614|pantothenate kinase 4
mm9_v1_chr18_+_37157533_37157533	0.992166	EOMES.p2	AY013767|Pcdha9|192161|protocadherin alpha 9	NM_138661|Pcdha9|192161|protocadherin alpha 9
mm9_v1_chr11_-_58996703_58996716	0.990202	EOMES.p2	AK046609|Gjc2|118454|gap junction protein, gamma 2	AY394498|Gjc2|118454|gap junction protein, gamma 2	NM_080454|Gjc2|118454|gap junction protein, gamma 2
mm9_v1_chr3_-_157686385_157686385	0.990165	EOMES.p2	NM_026989|Srsf11|69207|serine/arginine-rich splicing factor 11
mm9_v1_chr7_+_29222465_29222512	0.988028	EOMES.p2	AK002834|Gmfg|63986|glia maturation factor, gamma	AK014214|Gmfg|63986|glia maturation factor, gamma	NM_022024|Gmfg|63986|glia maturation factor, gamma	AF297221|Gmfg|63986|glia maturation factor, gamma	BC011488|Gmfg|63986|glia maturation factor, gamma
mm9_v1_chrX_-_7182450_7182545	0.987729	EOMES.p2	BC011195|Ccdc22|54638|coiled-coil domain containing 22	AK010536|Ccdc22|54638|coiled-coil domain containing 22	AF229637|Ccdc22|54638|coiled-coil domain containing 22	AK039573|Ccdc22|54638|coiled-coil domain containing 22	NM_138603|Ccdc22|54638|coiled-coil domain containing 22
mm9_v1_chr4_+_28740314_28740475	0.987565	EOMES.p2	AK030480|Epha7|13841|Eph receptor A7	AK049848|Epha7|13841|Eph receptor A7	BC026153|Epha7|13841|Eph receptor A7	AK032973|Epha7|13841|Eph receptor A7
mm9_v1_chr6_-_129225348_129225390	0.98536	EOMES.p2	BC139135|Cd69|12515|CD69 antigen	BC139136|Cd69|12515|CD69 antigen	BC106997|Cd69|12515|CD69 antigen	BC128272|Cd69|12515|CD69 antigen	BC128273|Cd69|12515|CD69 antigen	AK017979|Cd69|12515|CD69 antigen	AK151076|Cd69|12515|CD69 antigen	AK153224|Cd69|12515|CD69 antigen	AK171645|Cd69|12515|CD69 antigen	NM_001033122|Cd69|12515|CD69 antigen
mm9_v1_chr11_+_120466872_120466883	0.982391	EOMES.p2	AK205961|Anapc11|66156|anaphase promoting complex subunit 11
mm9_v1_chr3_-_115417685_115417834	0.981137	EOMES.p2	BC051023|S1pr1|13609|sphingosine-1-phosphate receptor 1	AK146501|S1pr1|13609|sphingosine-1-phosphate receptor 1
mm9_v1_chr17_+_48371921_48371947	0.980764	EOMES.p2	NM_021406|Trem1|58217|triggering receptor expressed on myeloid cells 1	AK171753|Trem1|58217|triggering receptor expressed on myeloid cells 1	AK089439|Trem1|58217|triggering receptor expressed on myeloid cells 1	BC111875|Trem1|58217|triggering receptor expressed on myeloid cells 1	AF241219|Trem1|58217|triggering receptor expressed on myeloid cells 1
mm9_v1_chr4_-_46417054_46417104	0.97828	EOMES.p2	AF269248|Hemgn|93966|hemogen	NM_053149|Hemgn|93966|hemogen	AK171906|Hemgn|93966|hemogen
mm9_v1_chr10_-_61738537_61738571	0.975503	EOMES.p2	U89409|Hk1|15275|hexokinase 1	AK218898|Hk1|15275|hexokinase 1
mm9_v1_chr12_-_76697148_76697159	0.97454	EOMES.p2	AK088366|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform
mm9_v1_chr4_+_132530009_132530071	0.972813	EOMES.p2	NM_010208|Fgr|14191|Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog	AK155902|Fgr|14191|Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog	AK089812|Fgr|14191|Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog	AK157640|Fgr|14191|Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog	AK171824|Fgr|14191|Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog	X16440|Fgr|14191|Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog
mm9_v1_chr2_-_168427037_168427156	0.968915	EOMES.p2	EU887581|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887587|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887593|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887599|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	AK083119|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887583|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887585|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887589|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887591|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887595|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887597|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887601|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887603|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	NM_001037178|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	AK044489|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2
mm9_v1_chr1_+_60466462_60466491	0.966119	EOMES.p2	NM_001198570|Abi2|329165|abl-interactor 2	NM_001198571|Abi2|329165|abl-interactor 2	NM_198127|Abi2|329165|abl-interactor 2
mm9_v1_chr10_+_126504125_126504226	0.963857	EOMES.p2	
mm9_v1_chr7_+_86955612_86955621	0.963483	EOMES.p2	NM_008589|Mesp2|17293|mesoderm posterior 2	U71125|Mesp2|17293|mesoderm posterior 2
mm9_v1_chr17_+_3482314_3482460	0.958891	EOMES.p2	AK158489|Tiam2|24001|T-cell lymphoma invasion and metastasis 2
mm9_v1_chr4_-_141567551_141567551	0.958644	EOMES.p2	NM_177868|Fhad1|329977|forkhead-associated (FHA) phosphopeptide binding domain 1
mm9_v1_chr3_-_115417847_115417876	0.9572	EOMES.p2	BC049094|S1pr1|13609|sphingosine-1-phosphate receptor 1	AK138316|S1pr1|13609|sphingosine-1-phosphate receptor 1
mm9_v1_chr2_-_127346987_127347085	0.956307	EOMES.p2	AF274050|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	DQ148499|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF300870|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC057329|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC026980|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC047139|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AK165711|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF184624|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr8_+_116729508_116729539	0.95324	EOMES.p2	BC056927|Vat1l|270097|vesicle amine transport protein 1 homolog-like (T. californica)	AK122527|Vat1l|270097|vesicle amine transport protein 1 homolog-like (T. californica)	NM_173016|Vat1l|270097|vesicle amine transport protein 1 homolog-like (T. californica)
mm9_v1_chr11_-_115560620_115560673	0.947161	EOMES.p2	D85748|Grb2|14784|growth factor receptor bound protein 2	U07617|Grb2|14784|growth factor receptor bound protein 2	AK170845|Grb2|14784|growth factor receptor bound protein 2
mm9_v1_chr10_-_12587945_12588041	0.947113	EOMES.p2	BC062163|Utrn|22288|utrophin	BC011062|Utrn|22288|utrophin
mm9_v1_chr4_-_63522069_63522317	0.94411	EOMES.p2	AK157270|Tnfsf8|21949|tumor necrosis factor (ligand) superfamily, member 8	L09754|Tnfsf8|21949|tumor necrosis factor (ligand) superfamily, member 8	BC117093|Tnfsf8|21949|tumor necrosis factor (ligand) superfamily, member 8	BC117097|Tnfsf8|21949|tumor necrosis factor (ligand) superfamily, member 8	AK030916|Tnfsf8|21949|tumor necrosis factor (ligand) superfamily, member 8	NM_009403|Tnfsf8|21949|tumor necrosis factor (ligand) superfamily, member 8
mm9_v1_chr5_+_122660225_122660306	0.940448	EOMES.p2	AK186675|Hvcn1|74096|hydrogen voltage-gated channel 1	AK002854|Hvcn1|74096|hydrogen voltage-gated channel 1	NM_028752|Hvcn1|74096|hydrogen voltage-gated channel 1
mm9_v1_chr11_+_83476085_83476138	0.93704	EOMES.p2	NM_013652|Ccl4|20303|chemokine (C-C motif) ligand 4	AK089326|Ccl4|20303|chemokine (C-C motif) ligand 4	AK154685|Ccl4|20303|chemokine (C-C motif) ligand 4	AK155053|Ccl4|20303|chemokine (C-C motif) ligand 4	M23503|Ccl4|20303|chemokine (C-C motif) ligand 4	AK156948|Ccl4|20303|chemokine (C-C motif) ligand 4	AK172472|Ccl4|20303|chemokine (C-C motif) ligand 4	M35590|Ccl4|20303|chemokine (C-C motif) ligand 4	AF128218|Ccl4|20303|chemokine (C-C motif) ligand 4	AF128219|Ccl4|20303|chemokine (C-C motif) ligand 4	BC119257|Ccl4|20303|chemokine (C-C motif) ligand 4	BC119259|Ccl4|20303|chemokine (C-C motif) ligand 4
mm9_v1_chr8_+_123263681_123263725	0.935611	EOMES.p2	CT010225|Irf8|15900|interferon regulatory factor 8
mm9_v1_chr17_+_8428907_8428907	0.929504	EOMES.p2	NM_001190333|Ccr6|12458|chemokine (C-C motif) receptor 6
mm9_v1_chr14_+_76362274_76362304	0.929193	EOMES.p2	AK032624|Kctd4|67516|potassium channel tetramerisation domain containing 4	AK017592|Kctd4|67516|potassium channel tetramerisation domain containing 4	BC028748|Kctd4|67516|potassium channel tetramerisation domain containing 4	AK032314|Kctd4|67516|potassium channel tetramerisation domain containing 4
mm9_v1_chr15_-_95358989_95359075	0.927791	EOMES.p2	AK039790|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr16_+_4939100_4939137	0.927058	EOMES.p2	AK003241|Nudt16l1|66911|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	NM_025839|Nudt16l1|66911|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	AK019936|Nudt16l1|66911|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	AK007897|Nudt16l1|66911|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	BC028494|Nudt16l1|66911|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	AK002378|Nudt16l1|66911|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	AK159841|Nudt16l1|66911|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	AF435792|Nudt16l1|66911|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	BC025569|Nudt16l1|66911|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1
mm9_v1_chrX_-_20639111_20639168	0.926508	EOMES.p2	AK155039|Zfp182|319535|zinc finger protein 182	BC063066|Zfp182|319535|zinc finger protein 182	AK045698|Zfp182|319535|zinc finger protein 182	NM_001013387|Zfp182|319535|zinc finger protein 182	NM_001111076|Zfp182|319535|zinc finger protein 182	AK043973|Zfp182|319535|zinc finger protein 182
mm9_v1_chr4_+_53727022_53727069	0.923273	EOMES.p2	AK144743|Fktn|246179|fukutin	AK052357|Fktn|246179|fukutin	AK142744|Fktn|246179|fukutin	BC017538|Fktn|246179|fukutin	AJ511807|Fktn|246179|fukutin	AB077384|Fktn|246179|fukutin	AK085931|Fktn|246179|fukutin	NM_139309|Fktn|246179|fukutin
mm9_v1_chrX_-_71070284_71070317	0.920959	EOMES.p2	AK046101|Pdzd4|245469|PDZ domain containing 4	NM_001029868|Pdzd4|245469|PDZ domain containing 4
mm9_v1_chr5_-_115750649_115750671	0.908932	EOMES.p2	BC085492|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr11_+_98603186_98603266	0.90847	EOMES.p2	AK078233|Thra|21833|thyroid hormone receptor alpha	NM_178060|Thra|21833|thyroid hormone receptor alpha	BC046795|Thra|21833|thyroid hormone receptor alpha
mm9_v1_chr2_+_164142482_164142497	0.906648	EOMES.p2	BC119247|Svs6|20945|seminal vesicle secretory protein 6	BC119249|Svs6|20945|seminal vesicle secretory protein 6	AK020303|Svs6|20945|seminal vesicle secretory protein 6	NM_013679|Svs6|20945|seminal vesicle secretory protein 6	L11393|Svs6|20945|seminal vesicle secretory protein 6	S65753|Svs6|20945|seminal vesicle secretory protein 6
mm9_v1_chr19_-_45890238_45890540	0.906459	EOMES.p2	AJ278536|Kcnip2|80906|Kv channel-interacting protein 2	AJ278537|Kcnip2|80906|Kv channel-interacting protein 2	AF439339|Kcnip2|80906|Kv channel-interacting protein 2	AF439340|Kcnip2|80906|Kv channel-interacting protein 2	AF439341|Kcnip2|80906|Kv channel-interacting protein 2	DQ148496|Kcnip2|80906|Kv channel-interacting protein 2	DQ148497|Kcnip2|80906|Kv channel-interacting protein 2	DQ148498|Kcnip2|80906|Kv channel-interacting protein 2	NM_030716|Kcnip2|80906|Kv channel-interacting protein 2	NM_145703|Kcnip2|80906|Kv channel-interacting protein 2	NM_145704|Kcnip2|80906|Kv channel-interacting protein 2	BC132215|Kcnip2|80906|Kv channel-interacting protein 2	BC138496|Kcnip2|80906|Kv channel-interacting protein 2	BC056434|Kcnip2|80906|Kv channel-interacting protein 2
mm9_v1_chr13_-_113891176_113891188	0.905521	EOMES.p2	M26183|Gzma|14938|granzyme A	AK146132|Gzma|14938|granzyme A	AK156728|Gzma|14938|granzyme A	X14799|Gzma|14938|granzyme A	BC061146|Gzma|14938|granzyme A	NM_010370|Gzma|14938|granzyme A
mm9_v1_chrX_+_98877684_98877720	0.903559	EOMES.p2	AK041765|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
mm9_v1_chr8_+_10153910_10154187	0.902156	EOMES.p2	BC072580|Myo16|244281|myosin XVI	NM_001081397|Myo16|244281|myosin XVI	BC151049|Myo16|244281|myosin XVI	BC151051|Myo16|244281|myosin XVI	BC157966|Myo16|244281|myosin XVI	BC172122|Myo16|244281|myosin XVI	BC082311|Myo16|244281|myosin XVI	AK082350|Myo16|244281|myosin XVI
mm9_v1_chr18_+_78546492_78546501	0.9017	EOMES.p2	BC158101|Gm6133|620155|60S ribosomal protein L17 pseudogene
mm9_v1_chr9_+_106073265_106073336	0.900305	EOMES.p2	BC094419|Wdr82|77305|WD repeat domain containing 82	BC157945|Wdr82|77305|WD repeat domain containing 82	BC158054|Wdr82|77305|WD repeat domain containing 82	BC157943|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr2_-_91790504_91790533	0.896071	EOMES.p2	AK087503|Dgkz|104418|diacylglycerol kinase zeta	NM_001166597|Dgkz|104418|diacylglycerol kinase zeta
mm9_v1_chr1_+_173847645_173847838	0.896043	EOMES.p2	AF248636|Slamf6|30925|SLAM family member 6	AF248635|Slamf6|30925|SLAM family member 6	NM_030710|Slamf6|30925|SLAM family member 6	BC030031|Slamf6|30925|SLAM family member 6	AB196808|Slamf6|30925|SLAM family member 6	AB196809|Slamf6|30925|SLAM family member 6	AB196810|Slamf6|30925|SLAM family member 6	AB196811|Slamf6|30925|SLAM family member 6	AB196836|Slamf6|30925|SLAM family member 6	EU591721|Slamf6|30925|SLAM family member 6
mm9_v1_chr15_-_98373055_98373058	0.887621	EOMES.p2	AK085131|Ccnt1|12455|cyclin T1	AK052836|Ccnt1|12455|cyclin T1
mm9_v1_chr10_-_61441842_61441910	0.883068	EOMES.p2	NM_007731|Col13a1|12817|collagen, type XIII, alpha 1	U30292|Col13a1|12817|collagen, type XIII, alpha 1
mm9_v1_chr1_-_31006461_31006538	0.881592	EOMES.p2	BC094447|Ptp4a1|19243|protein tyrosine phosphatase 4a1	BC003761|Ptp4a1|19243|protein tyrosine phosphatase 4a1	BC031734|Ptp4a1|19243|protein tyrosine phosphatase 4a1
mm9_v1_chr10_-_80496656_80496656	0.879877	EOMES.p2	BC005502|Slc39a3|106947|solute carrier family 39 (zinc transporter), member 3	NM_134135|Slc39a3|106947|solute carrier family 39 (zinc transporter), member 3
mm9_v1_chr2_+_164228640_164228712	0.870855	EOMES.p2	AK052449|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like	NM_009036|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like	Y10926|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like	BC152311|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like	AK131832|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like	AK131814|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like
mm9_v1_chr2_-_34817068_34817291	0.870797	EOMES.p2	AK169515|Traf1|22029|TNF receptor-associated factor 1	AK089281|Traf1|22029|TNF receptor-associated factor 1	L35302|Traf1|22029|TNF receptor-associated factor 1	AK142931|Traf1|22029|TNF receptor-associated factor 1	AK029135|Traf1|22029|TNF receptor-associated factor 1	NM_009421|Traf1|22029|TNF receptor-associated factor 1
mm9_v1_chr11_-_78020699_78020746	0.868631	EOMES.p2	
mm9_v1_chr6_+_57183432_57183432	0.867748	EOMES.p2	NM_053237|Vmn1r14|113864|vomeronasal 1 receptor 14
mm9_v1_chr10_+_77315603_77315603	0.865132	EOMES.p2	NM_001162944|Gm10318|622629|predicted gene 10318
mm9_v1_chr10_-_115922360_115922443	0.85351	EOMES.p2	AK019295|Cnot2|72068|CCR4-NOT transcription complex, subunit 2
mm9_v1_chrX_+_104344265_104344265	0.853045	EOMES.p2	NM_001122596|A630033H20Rik|213438|RIKEN cDNA A630033H20 gene
mm9_v1_chr5_+_123794456_123794498	0.851967	EOMES.p2	NM_029850|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK086803|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK044782|Bcl7a|77045|B-cell CLL/lymphoma 7A
mm9_v1_chr4_-_150026205_150026286	0.851604	EOMES.p2	AK134677|Slc45a1|242773|solute carrier family 45, member 1	BC051188|Slc45a1|242773|solute carrier family 45, member 1	AK134683|Slc45a1|242773|solute carrier family 45, member 1	AK158002|Slc45a1|242773|solute carrier family 45, member 1	AK082651|Slc45a1|242773|solute carrier family 45, member 1	NM_173774|Slc45a1|242773|solute carrier family 45, member 1
mm9_v1_chr12_-_76697229_76697243	0.84723	EOMES.p2	AK053228|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	AK133824|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform
mm9_v1_chr7_-_107475377_107475426	0.845495	EOMES.p2	
mm9_v1_chr2_-_25174498_25174656	0.832207	EOMES.p2	D10028|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	BC039157|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	AK158175|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	AK036204|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	AK158140|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)
mm9_v1_chr1_-_163806710_163806814	0.829853	EOMES.p2	BC138379|AI848100|226551|expressed sequence AI848100	AK171856|AI848100|226551|expressed sequence AI848100	NM_172645|AI848100|226551|expressed sequence AI848100
mm9_v1_chr19_+_56798916_56798947	0.821667	EOMES.p2	AK039569|Adrb1|11554|adrenergic receptor, beta 1
mm9_v1_chr11_-_17847399_17847495	0.821343	EOMES.p2	AK018594|Etaa1|68145|Ewing's tumor-associated antigen 1
mm9_v1_chr8_+_107471254_107471257	0.81966	EOMES.p2	AK040349|Ces2f|71903|carboxylesterase 2F	BC117742|Ces2f|71903|carboxylesterase 2F	BC117743|Ces2f|71903|carboxylesterase 2F	NM_001079865|Ces2f|71903|carboxylesterase 2F
mm9_v1_chr9_-_110019806_110019945	0.817134	EOMES.p2	BC062885|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK153969|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK184646|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK159601|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK146326|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm9_v1_chr12_-_42212337_42212337	0.81689	EOMES.p2	BC069041|Lrrn3|16981|leucine rich repeat protein 3, neuronal	NM_010733|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr1_+_174012641_174012773	0.816102	EOMES.p2	NM_009938|Copa|12847|coatomer protein complex subunit alpha	AK162632|Copa|12847|coatomer protein complex subunit alpha
mm9_v1_chr2_+_164773719_164773750	0.810228	EOMES.p2	D12712|Mmp9|17395|matrix metallopeptidase 9	AK142787|Mmp9|17395|matrix metallopeptidase 9	AK159292|Mmp9|17395|matrix metallopeptidase 9	AK161176|Mmp9|17395|matrix metallopeptidase 9	Z27231|Mmp9|17395|matrix metallopeptidase 9	AK004651|Mmp9|17395|matrix metallopeptidase 9	BC046991|Mmp9|17395|matrix metallopeptidase 9	NM_013599|Mmp9|17395|matrix metallopeptidase 9
mm9_v1_chr17_-_65944300_65944335	0.80785	EOMES.p2	AK149040|Vapa|30960|vesicle-associated membrane protein, associated protein A
mm9_v1_chr3_-_30799013_30799120	0.803129	EOMES.p2	AK050678|Phc3|241915|polyhomeotic-like 3 (Drosophila)
mm9_v1_chr19_-_4175478_4175577	0.802224	EOMES.p2	NM_134148|Carns1|107239|carnosine synthase 1
mm9_v1_chr7_+_148514044_148514084	0.800307	EOMES.p2	AK148367|Tmem80|71448|transmembrane protein 80	AK169083|Tmem80|71448|transmembrane protein 80	BC096570|Tmem80|71448|transmembrane protein 80	BC022756|Tmem80|71448|transmembrane protein 80
mm9_v1_chr11_-_33743416_33743626	0.798553	EOMES.p2	AY647242|Kcnip1|70357|Kv channel-interacting protein 1	AY171234|Kcnip1|70357|Kv channel-interacting protein 1	BC034241|Kcnip1|70357|Kv channel-interacting protein 1	DQ148493|Kcnip1|70357|Kv channel-interacting protein 1	AK013657|Kcnip1|70357|Kv channel-interacting protein 1	AK014313|Kcnip1|70357|Kv channel-interacting protein 1	AK046398|Kcnip1|70357|Kv channel-interacting protein 1	AK045948|Kcnip1|70357|Kv channel-interacting protein 1	NM_001190885|Kcnip1|70357|Kv channel-interacting protein 1	NM_027398|Kcnip1|70357|Kv channel-interacting protein 1
mm9_v1_chr9_+_46721685_46721730	0.794946	EOMES.p2	AK038437|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	AK049847|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	AK013669|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	BC054400|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	AK140089|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene
mm9_v1_chr18_+_37844927_37845053	0.791961	EOMES.p2	BC049814|Pcdhga4|93712|protocadherin gamma subfamily A, 4	AY013798|Pcdhga4|93712|protocadherin gamma subfamily A, 4	NM_033587|Pcdhga4|93712|protocadherin gamma subfamily A, 4
mm9_v1_chrX_-_98615096_98615252	0.790106	EOMES.p2	BC042699|Zmym3|56364|zinc finger, MYM-type 3	BC050131|Zmym3|56364|zinc finger, MYM-type 3	AK033470|Zmym3|56364|zinc finger, MYM-type 3	BC108366|Zmym3|56364|zinc finger, MYM-type 3	NM_001177985|Zmym3|56364|zinc finger, MYM-type 3	NM_001177986|Zmym3|56364|zinc finger, MYM-type 3
mm9_v1_chr13_-_8870975_8870975	0.788405	EOMES.p2	NM_001039388|Wdr37|207615|WD repeat domain 37
mm9_v1_chr10_+_98725858_98725868	0.787828	EOMES.p2	AK088665|Dusp6|67603|dual specificity phosphatase 6	AK005062|Dusp6|67603|dual specificity phosphatase 6	AK088468|Dusp6|67603|dual specificity phosphatase 6	AK148192|Dusp6|67603|dual specificity phosphatase 6	AK159502|Dusp6|67603|dual specificity phosphatase 6	NM_026268|Dusp6|67603|dual specificity phosphatase 6	AK151126|Dusp6|67603|dual specificity phosphatase 6	AK152773|Dusp6|67603|dual specificity phosphatase 6
mm9_v1_chr1_-_53813191_53813277	0.785487	EOMES.p2	
mm9_v1_chr19_+_26822892_26822948	0.783307	EOMES.p2	NM_026003|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	AK011935|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm9_v1_chr8_-_75090050_75090196	0.782344	EOMES.p2	AK215124|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK217818|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK207517|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene
mm9_v1_chr11_-_23795215_23795279	0.781069	EOMES.p2	BC049163|Papolg|216578|poly(A) polymerase gamma	AK042629|Papolg|216578|poly(A) polymerase gamma	AK139065|Papolg|216578|poly(A) polymerase gamma	AK035810|Papolg|216578|poly(A) polymerase gamma	BC059271|Papolg|216578|poly(A) polymerase gamma	NM_172555|Papolg|216578|poly(A) polymerase gamma
mm9_v1_chr4_+_138011061_138011100	0.776475	EOMES.p2	NM_025451|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1	AY523601|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm9_v1_chr19_-_11067736_11067739	0.775107	EOMES.p2	BC147202|Ms4a15|545279|membrane-spanning 4-domains, subfamily A, member 15	BC172006|Ms4a15|545279|membrane-spanning 4-domains, subfamily A, member 15	BC172010|Ms4a15|545279|membrane-spanning 4-domains, subfamily A, member 15	AK143446|Ms4a15|545279|membrane-spanning 4-domains, subfamily A, member 15	NM_001034898|Ms4a15|545279|membrane-spanning 4-domains, subfamily A, member 15
mm9_v1_chrX_+_106392094_106392130	0.769951	EOMES.p2	NM_001037917|Gm6377|622976|predicted gene 6377	AK080287|Gm6377|622976|predicted gene 6377	AK138683|Gm6377|622976|predicted gene 6377	BC147431|Gm6377|622976|predicted gene 6377	BC147432|Gm6377|622976|predicted gene 6377
mm9_v1_chr6_-_93863547_93863683	0.76768	EOMES.p2	AK163800|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083321|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	BC060273|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083320|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr5_-_83783923_83784219	0.767418	EOMES.p2	AK052302|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	AK052378|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	AK052276|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	BC107366|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	BC107367|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	AF548365|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	AK052284|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like	NM_153801|Tecrl|243078|trans-2,3-enoyl-CoA reductase-like
mm9_v1_chr10_-_100051657_100051858	0.767307	EOMES.p2	AK015251|4930430F08Rik|68281|RIKEN cDNA 4930430F08 gene	AK043358|4930430F08Rik|68281|RIKEN cDNA 4930430F08 gene	BC082587|4930430F08Rik|68281|RIKEN cDNA 4930430F08 gene	AK082894|4930430F08Rik|68281|RIKEN cDNA 4930430F08 gene	AK032226|4930430F08Rik|68281|RIKEN cDNA 4930430F08 gene
mm9_v1_chr4_+_135845910_135845945	0.766722	EOMES.p2	BC092398|Zfp46|22704|zinc finger protein 46
mm9_v1_chr4_-_116794923_116794989	0.763867	EOMES.p2	AK141215|Btbd19|78611|BTB (POZ) domain containing 19
mm9_v1_chr19_-_7557678_7557684	0.762281	EOMES.p2	BC036717|Rtn3|20168|reticulon 3	BC005478|Rtn3|20168|reticulon 3
mm9_v1_chr1_+_182823238_182823249	0.760607	EOMES.p2	AK031621|Lefty2|320202|left-right determination factor 2	AK131960|Lefty2|320202|left-right determination factor 2	BC066224|Lefty2|320202|left-right determination factor 2	NM_177099|Lefty2|320202|left-right determination factor 2
mm9_v1_chr9_+_106073255_106073259	0.756592	EOMES.p2	AK037620|Wdr82|77305|WD repeat domain containing 82	AK035109|Wdr82|77305|WD repeat domain containing 82	AK149692|Wdr82|77305|WD repeat domain containing 82	AK159240|Wdr82|77305|WD repeat domain containing 82	AK172474|Wdr82|77305|WD repeat domain containing 82	NM_029896|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr6_+_8900018_8900018	0.754245	EOMES.p2	BC145953|Nxph1|18231|neurexophilin 1	BC145955|Nxph1|18231|neurexophilin 1	NM_008751|Nxph1|18231|neurexophilin 1
mm9_v1_chr11_-_99911864_99911864	0.75381	EOMES.p2	M27734|Krt31|16660|keratin 31	NM_010659|Krt31|16660|keratin 31
mm9_v1_chr2_+_49643205_49643207	0.75042	EOMES.p2	NM_027990|Lypd6b|71897|LY6/PLAUR domain containing 6B	AK009282|Lypd6b|71897|LY6/PLAUR domain containing 6B
mm9_v1_chr16_-_37385024_37385045	0.747823	EOMES.p2	AK043658|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114611|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114612|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114613|Stxbp5l|207227|syntaxin binding protein 5-like	NM_172440|Stxbp5l|207227|syntaxin binding protein 5-like
mm9_v1_chr12_-_57446800_57446880	0.746032	EOMES.p2	AK077125|Mbip|217588|MAP3K12 binding inhibitory protein 1	AK154318|Mbip|217588|MAP3K12 binding inhibitory protein 1	AK171164|Mbip|217588|MAP3K12 binding inhibitory protein 1	BC002277|Mbip|217588|MAP3K12 binding inhibitory protein 1	NM_145442|Mbip|217588|MAP3K12 binding inhibitory protein 1
mm9_v1_chr12_-_81537261_81537482	0.74525	EOMES.p2	BC042567|Dcaf5|320808|DDB1 and CUL4 associated factor 5	AK122561|Dcaf5|320808|DDB1 and CUL4 associated factor 5
mm9_v1_chr9_-_64799413_64799413	0.744877	EOMES.p2	BC016094|Slc24a1|214111|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	NM_144813|Slc24a1|214111|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1
mm9_v1_chr3_+_52153283_52153283	0.743852	EOMES.p2	AK054289|Foxo1|56458|forkhead box O1
mm9_v1_chr3_-_92674126_92674141	0.743147	EOMES.p2	NM_025621|2310050C09Rik|66533|RIKEN cDNA 2310050C09 gene
mm9_v1_chr2_+_167340686_167340879	0.74161	EOMES.p2	BC019989|Rnf114|81018|ring finger protein 114	AK216194|Rnf114|81018|ring finger protein 114	AK003584|Rnf114|81018|ring finger protein 114
mm9_v1_chr15_+_74346835_74346839	0.741497	EOMES.p2	AK147494|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr7_+_6238181_6238231	0.738931	EOMES.p2	AY850275|Zfp667|384763|zinc finger protein 667	BC049673|Zfp667|384763|zinc finger protein 667	NM_001024928|Zfp667|384763|zinc finger protein 667	AK080616|Zfp667|384763|zinc finger protein 667	BC141152|Zfp667|384763|zinc finger protein 667	BC141153|Zfp667|384763|zinc finger protein 667	AK164056|Zfp667|384763|zinc finger protein 667
mm9_v1_chr1_-_146622545_146622564	0.73326	EOMES.p2	BC099387|Rgs18|64214|regulator of G-protein signaling 18	AK036407|Rgs18|64214|regulator of G-protein signaling 18	BC132544|Rgs18|64214|regulator of G-protein signaling 18	BC132546|Rgs18|64214|regulator of G-protein signaling 18	NM_022881|Rgs18|64214|regulator of G-protein signaling 18	AB042807|Rgs18|64214|regulator of G-protein signaling 18	AF302685|Rgs18|64214|regulator of G-protein signaling 18
mm9_v1_chr5_-_115119973_115120071	0.732479	EOMES.p2	AK189496|Gltp|56356|glycolipid transfer protein
mm9_v1_chr7_+_51024469_51024469	0.730958	EOMES.p2	BC147442|Klk12|69511|kallikrein related-peptidase 12	BC147463|Klk12|69511|kallikrein related-peptidase 12	NM_027097|Klk12|69511|kallikrein related-peptidase 12
mm9_v1_chr9_+_81757308_81757350	0.720853	EOMES.p2	BC096613|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	AK082395|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	AK166209|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	AK043929|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	NM_175213|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)
mm9_v1_chr6_-_92164804_92164868	0.716264	EOMES.p2	BC049106|Zfyve20|78287|zinc finger, FYVE domain containing 20	NM_030081|Zfyve20|78287|zinc finger, FYVE domain containing 20	AK019909|Zfyve20|78287|zinc finger, FYVE domain containing 20	BC017622|Zfyve20|78287|zinc finger, FYVE domain containing 20
mm9_v1_chr11_-_98054573_98054589	0.716215	EOMES.p2	BC021440|Med1|19014|mediator complex subunit 1	BC079636|Med1|19014|mediator complex subunit 1	AK147199|Med1|19014|mediator complex subunit 1	AK005207|Med1|19014|mediator complex subunit 1
mm9_v1_chr7_-_14840218_14840218	0.714821	EOMES.p2	BC147210|Sult2a6|629219|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 6	BC172008|Sult2a6|629219|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 6	NM_001081325|Sult2a6|629219|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 6
mm9_v1_chr4_-_46416895_46416973	0.714655	EOMES.p2	AK077692|Hemgn|93966|hemogen	AY699986|Hemgn|93966|hemogen	AK156536|Hemgn|93966|hemogen	AK171890|Hemgn|93966|hemogen	AK172421|Hemgn|93966|hemogen
mm9_v1_chr7_+_133991066_133991211	0.714037	EOMES.p2	BC055768|Doc2a|13446|double C2, alpha	NM_010069|Doc2a|13446|double C2, alpha
mm9_v1_chr8_+_87223501_87223638	0.713901	EOMES.p2	
mm9_v1_chr3_-_51129908_51129958	0.710988	EOMES.p2	AF256216|Elf2|69257|E74-like factor 2	AF256217|Elf2|69257|E74-like factor 2	NM_023502|Elf2|69257|E74-like factor 2	BC092057|Elf2|69257|E74-like factor 2
mm9_v1_chr8_+_97541591_97541631	0.709258	EOMES.p2	NM_173036|Gpr97|54672|G protein-coupled receptor 97	AK154648|Gpr97|54672|G protein-coupled receptor 97	AK155164|Gpr97|54672|G protein-coupled receptor 97	BC064726|Gpr97|54672|G protein-coupled receptor 97
mm9_v1_chr14_+_32064678_32064794	0.708382	EOMES.p2	BC050901|Bap1|104416|Brca1 associated protein 1	BC042489|Bap1|104416|Brca1 associated protein 1	AK129108|Bap1|104416|Brca1 associated protein 1	AB047820|Bap1|104416|Brca1 associated protein 1
mm9_v1_chr15_+_97942484_97942592	0.704735	EOMES.p2	D21868|Pfkm|18642|phosphofructokinase, muscle	NM_021514|Pfkm|18642|phosphofructokinase, muscle	BC005526|Pfkm|18642|phosphofructokinase, muscle	AF249894|Pfkm|18642|phosphofructokinase, muscle	D21865|Pfkm|18642|phosphofructokinase, muscle
mm9_v1_chr10_-_20880559_20880789	0.701795	EOMES.p2	X02774|Myb|17863|myeloblastosis oncogene	AK132250|Myb|17863|myeloblastosis oncogene	AK137965|Myb|17863|myeloblastosis oncogene	BC011513|Myb|17863|myeloblastosis oncogene	AK088079|Myb|17863|myeloblastosis oncogene	AK088598|Myb|17863|myeloblastosis oncogene	M12848|Myb|17863|myeloblastosis oncogene	NM_001198914|Myb|17863|myeloblastosis oncogene	NM_010848|Myb|17863|myeloblastosis oncogene
mm9_v1_chr1_-_140744146_140744155	0.697571	EOMES.p2	AF134761|Lhx9|16876|LIM homeobox protein 9	AJ243851|Lhx9|16876|LIM homeobox protein 9	NM_010714|Lhx9|16876|LIM homeobox protein 9
mm9_v1_chr6_+_5340417_5340708	0.69613	EOMES.p2	AK132068|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK018373|Asb4|65255|ankyrin repeat and SOCS box-containing 4	BC054745|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK076004|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AF155355|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK133894|Asb4|65255|ankyrin repeat and SOCS box-containing 4
mm9_v1_chr10_-_111434265_111434319	0.690619	EOMES.p2	AK137557|Glipr1|73690|GLI pathogenesis-related 1 (glioma)	AK170051|Glipr1|73690|GLI pathogenesis-related 1 (glioma)	BC098231|Glipr1|73690|GLI pathogenesis-related 1 (glioma)	NM_028608|Glipr1|73690|GLI pathogenesis-related 1 (glioma)
mm9_v1_chrX_-_130432840_130432967	0.688075	EOMES.p2	AK160313|Tspan6|56496|tetraspanin 6	AK167384|Tspan6|56496|tetraspanin 6	AK146673|Tspan6|56496|tetraspanin 6	AK149204|Tspan6|56496|tetraspanin 6	BC110314|Tspan6|56496|tetraspanin 6	BC003733|Tspan6|56496|tetraspanin 6	NM_019656|Tspan6|56496|tetraspanin 6
mm9_v1_chr1_-_170362244_170362272	0.688017	EOMES.p2	BC054376|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK037006|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr5_-_3802874_3803076	0.685631	EOMES.p2	BC145510|Ankib1|70797|ankyrin repeat and IBR domain containing 1	BC145511|Ankib1|70797|ankyrin repeat and IBR domain containing 1	BC150792|Ankib1|70797|ankyrin repeat and IBR domain containing 1	AK129343|Ankib1|70797|ankyrin repeat and IBR domain containing 1
mm9_v1_chr15_-_88931527_88931637	0.683774	EOMES.p2	AK052293|Tubgcp6|328580|tubulin, gamma complex associated protein 6	BC023717|Tubgcp6|328580|tubulin, gamma complex associated protein 6
mm9_v1_chr6_-_13785233_13785235	0.682743	EOMES.p2	AK013598|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr2_-_66278870_66278908	0.681841	EOMES.p2	AK046001|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	AK134744|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	NM_018733|Scn1a|20265|sodium channel, voltage-gated, type I, alpha
mm9_v1_chr12_-_76697166_76697196	0.677995	EOMES.p2	BC094387|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	AK220163|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	BC085149|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	NM_012024|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform
mm9_v1_chr2_+_163646545_163646658	0.670369	EOMES.p2	NM_016873|Wisp2|22403|WNT1 inducible signaling pathway protein 2	AF100778|Wisp2|22403|WNT1 inducible signaling pathway protein 2	AF126063|Wisp2|22403|WNT1 inducible signaling pathway protein 2	BC032877|Wisp2|22403|WNT1 inducible signaling pathway protein 2
mm9_v1_chr13_+_24895094_24895151	0.667517	EOMES.p2	BC002217|BC005537|79555|cDNA sequence BC005537
mm9_v1_chr9_+_39955706_39955790	0.667154	EOMES.p2	AK006538|Tmem225|75667|transmembrane protein 225	NM_029379|Tmem225|75667|transmembrane protein 225	BC116869|Tmem225|75667|transmembrane protein 225	BC116871|Tmem225|75667|transmembrane protein 225
mm9_v1_chr11_+_6963421_6963491	0.660123	EOMES.p2	NM_009622|Adcy1|432530|adenylate cyclase 1
mm9_v1_chr14_-_64035873_64036023	0.659878	EOMES.p2	BC030668|Blk|12143|B lymphoid kinase	M30903|Blk|12143|B lymphoid kinase	AK171640|Blk|12143|B lymphoid kinase	AK089888|Blk|12143|B lymphoid kinase	NM_007549|Blk|12143|B lymphoid kinase
mm9_v1_chr2_-_91802081_91802083	0.659694	EOMES.p2	
mm9_v1_chr8_+_125930981_125931146	0.657588	EOMES.p2	NM_008559|Mc1r|17199|melanocortin 1 receptor	AK148437|Mc1r|17199|melanocortin 1 receptor
mm9_v1_chr17_+_47641999_47642189	0.654347	EOMES.p2	NM_001081635|Ccnd3|12445|cyclin D3	NM_001081636|Ccnd3|12445|cyclin D3	AK161758|Ccnd3|12445|cyclin D3	AK083384|Ccnd3|12445|cyclin D3	AK020317|Ccnd3|12445|cyclin D3
mm9_v1_chr2_-_174967487_174967557	0.651033	EOMES.p2	AK166773|Gm14399|100043761|predicted gene 14399
mm9_v1_chr10_-_77707385_77707420	0.650704	EOMES.p2	AK166500|Trappc10|216131|trafficking protein particle complex 10	NM_001081055|Trappc10|216131|trafficking protein particle complex 10
mm9_v1_chr5_-_23857421_23857489	0.649645	EOMES.p2	AF012868|Kcnh2|16511|potassium voltage-gated channel, subfamily H (eag-related), member 2	NM_013569|Kcnh2|16511|potassium voltage-gated channel, subfamily H (eag-related), member 2
mm9_v1_chr11_-_102226475_102226594	0.649454	EOMES.p2	AK172456|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK171662|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK137542|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK171845|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK172395|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK158184|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK157181|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK158143|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	NM_011403|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1
mm9_v1_chrX_+_139997806_139997811	0.646259	EOMES.p2	NM_008778|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	BC053403|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr10_-_61970481_61970509	0.644577	EOMES.p2	BC037076|Srgn|19073|serglycin	J04549|Srgn|19073|serglycin	AK157945|Srgn|19073|serglycin	M34603|Srgn|19073|serglycin	NM_011157|Srgn|19073|serglycin	X16133|Srgn|19073|serglycin	AK168124|Srgn|19073|serglycin	AK151357|Srgn|19073|serglycin
mm9_v1_chr8_-_114457667_114457780	0.644562	EOMES.p2	BC100402|Tmem231|234740|transmembrane protein 231	AK155425|Tmem231|234740|transmembrane protein 231	NM_001033321|Tmem231|234740|transmembrane protein 231	AK030046|Tmem231|234740|transmembrane protein 231	BC132428|Tmem231|234740|transmembrane protein 231	BC132430|Tmem231|234740|transmembrane protein 231
mm9_v1_chr17_+_26339936_26339946	0.644113	EOMES.p2	AK039314|Rgs11|50782|regulator of G-protein signaling 11	BC037655|Rgs11|50782|regulator of G-protein signaling 11
mm9_v1_chr10_-_26095736_26095813	0.64098	EOMES.p2	BC082309|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)	AK031398|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)
mm9_v1_chr19_-_59018112_59018143	0.640252	EOMES.p2	AK076683|Hspa12a|73442|heat shock protein 12A	AK076668|Hspa12a|73442|heat shock protein 12A	AK087732|Hspa12a|73442|heat shock protein 12A
mm9_v1_chr11_+_97702591_97702632	0.638961	EOMES.p2	AK081899|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK140210|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK042827|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK031146|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK035650|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK018341|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK080808|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK082773|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene
mm9_v1_chr4_+_33118344_33118432	0.638256	EOMES.p2	AK160428|Ube2j1|56228|ubiquitin-conjugating enzyme E2, J1	NM_019586|Ube2j1|56228|ubiquitin-conjugating enzyme E2, J1
mm9_v1_chr7_-_88851798_88851810	0.631993	EOMES.p2	AK163423|Homer2|26557|homer homolog 2 (Drosophila)	NM_001164086|Homer2|26557|homer homolog 2 (Drosophila)	NM_011983|Homer2|26557|homer homolog 2 (Drosophila)
mm9_v1_chr10_+_117641997_117642023	0.631767	EOMES.p2	AJ249491|Il22|50929|interleukin 22	BC104348|Il22|50929|interleukin 22	BC104349|Il22|50929|interleukin 22	NM_016971|Il22|50929|interleukin 22	BC116235|Il22|50929|interleukin 22
mm9_v1_chr2_+_163051189_163051200	0.631443	EOMES.p2	NM_001098799|Tox2|269389|TOX high mobility group box family member 2
mm9_v1_chr11_-_11790403_11790410	0.62996	EOMES.p2	AK011834|Ddc|13195|dopa decarboxylase	AK149141|Ddc|13195|dopa decarboxylase	AK160769|Ddc|13195|dopa decarboxylase	NM_016672|Ddc|13195|dopa decarboxylase
mm9_v1_chr1_-_93308194_93308203	0.629359	EOMES.p2	
mm9_v1_chr14_-_35413143_35413327	0.627664	EOMES.p2	EU303117|Opn4|30044|opsin 4 (melanopsin)	EU303118|Opn4|30044|opsin 4 (melanopsin)	BC139827|Opn4|30044|opsin 4 (melanopsin)	AF147789|Opn4|30044|opsin 4 (melanopsin)	NM_001128599|Opn4|30044|opsin 4 (melanopsin)	NM_013887|Opn4|30044|opsin 4 (melanopsin)
mm9_v1_chr3_+_94968227_94968295	0.62009	EOMES.p2	AF363972|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	AF363973|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	AB013729|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	NM_011351|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
mm9_v1_chrX_+_95345000_95345120	0.617469	EOMES.p2	X59592|Ar|11835|androgen receptor	S56585|Ar|11835|androgen receptor	AK133647|Ar|11835|androgen receptor	NM_013476|Ar|11835|androgen receptor	X53779|Ar|11835|androgen receptor	X59411|Ar|11835|androgen receptor	M37890|Ar|11835|androgen receptor
mm9_v1_chr9_+_89094110_89094142	0.61705	EOMES.p2	BC116241|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b	NM_007534|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b	BC028762|Bcl2a1a|12044|B-cell leukemia/lymphoma 2 related protein A1a	AK138369|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b	BC100462|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b	AK152200|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b
mm9_v1_chr4_+_132530104_132530141	0.616452	EOMES.p2	AK038141|Fgr|14191|Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog	X52191|Fgr|14191|Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog	BC057863|Fgr|14191|Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog
mm9_v1_chr10_+_74636715_74636718	0.61228	EOMES.p2	AK017213|Bcr|110279|breakpoint cluster region
mm9_v1_chr3_+_17954689_17954736	0.607904	EOMES.p2	AF218865|Bhlhe22|59058|basic helix-loop-helix family, member e22
mm9_v1_chr16_-_88874510_88874513	0.606343	EOMES.p2	BC115787|Krtap16-1|170651|keratin associated protein 16-1	AF345291|Krtap16-1|170651|keratin associated protein 16-1	BC115815|Krtap16-1|170651|keratin associated protein 16-1	NM_130870|Krtap16-1|170651|keratin associated protein 16-1
mm9_v1_chr15_-_97551580_97551592	0.60319	EOMES.p2	M95545|Endou|19011|endonuclease, polyU-specific	NM_008902|Endou|19011|endonuclease, polyU-specific	AK169457|Endou|19011|endonuclease, polyU-specific
mm9_v1_chr19_+_5493612_5493771	0.593871	EOMES.p2	AK195534|Cfl1|12631|cofilin 1, non-muscle	AK198064|Cfl1|12631|cofilin 1, non-muscle	AK200194|Cfl1|12631|cofilin 1, non-muscle	AK208902|Cfl1|12631|cofilin 1, non-muscle	AK215762|Cfl1|12631|cofilin 1, non-muscle
mm9_v1_chr11_+_48900507_48900589	0.592078	EOMES.p2	AK133471|Olfr56|18356|olfactory receptor 56	AK156785|Ifi47|15953|interferon gamma inducible protein 47	BC001986|Ifi47|15953|interferon gamma inducible protein 47	BC141219|Olfr56|18356|olfactory receptor 56	BC147437|Olfr56|18356|olfactory receptor 56	M63630|Ifi47|15953|interferon gamma inducible protein 47	NM_008330|Ifi47|15953|interferon gamma inducible protein 47	BC009131|Ifi47|15953|interferon gamma inducible protein 47
mm9_v1_chr2_+_153834000_153834013	0.591321	EOMES.p2	AK009032|Psp|19194|parotid secretory protein	AK010181|Psp|19194|parotid secretory protein	AK009654|Psp|19194|parotid secretory protein	BC010288|Psp|19194|parotid secretory protein	BC053336|Psp|19194|parotid secretory protein	NM_008953|Psp|19194|parotid secretory protein	BC037124|Psp|19194|parotid secretory protein
mm9_v1_chr12_+_88288287_88288431	0.591067	EOMES.p2	NM_173735|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	AK165964|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	AK154476|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	BC026384|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	AK122546|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	AK160643|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene
mm9_v1_chr16_-_29544883_29544949	0.5883	EOMES.p2	AK029367|Atp13a4|224079|ATPase type 13A4	AK014520|Atp13a4|224079|ATPase type 13A4	AK029303|Atp13a4|224079|ATPase type 13A4	AK028776|Atp13a4|224079|ATPase type 13A4	NM_001164613|Atp13a4|224079|ATPase type 13A4
mm9_v1_chr8_+_73332347_73332392	0.587885	EOMES.p2	AK137577|Il12rb1|16161|interleukin 12 receptor, beta 1	NM_008353|Il12rb1|16161|interleukin 12 receptor, beta 1	AK171937|Il12rb1|16161|interleukin 12 receptor, beta 1	U23922|Il12rb1|16161|interleukin 12 receptor, beta 1
mm9_v1_chr18_+_74433418_74433450	0.58606	EOMES.p2	AK166042|Mbd1|17190|methyl-CpG binding domain protein 1	AK193128|Mbd1|17190|methyl-CpG binding domain protein 1
mm9_v1_chr14_-_52898946_52899069	0.583269	EOMES.p2	AK044202|Rab2b|76338|RAB2B, member RAS oncogene family	BC033312|Rab2b|76338|RAB2B, member RAS oncogene family	AK005230|Rab2b|76338|RAB2B, member RAS oncogene family	BC054719|Rab2b|76338|RAB2B, member RAS oncogene family	AK038393|Rab2b|76338|RAB2B, member RAS oncogene family	AK038576|Rab2b|76338|RAB2B, member RAS oncogene family	AK169657|Rab2b|76338|RAB2B, member RAS oncogene family	BC046334|Rab2b|76338|RAB2B, member RAS oncogene family	NM_172601|Rab2b|76338|RAB2B, member RAS oncogene family
mm9_v1_chr4_+_89885510_89885510	0.582442	EOMES.p2	AF290196|Zfp352|236537|zinc finger protein 352	NM_153102|Zfp352|236537|zinc finger protein 352
mm9_v1_chr7_+_98239427_98239516	0.579097	EOMES.p2	AF388675|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr10_-_61802814_61802882	0.579067	EOMES.p2	AK214520|Hk1|15275|hexokinase 1	J05277|Hk1|15275|hexokinase 1	BC027316|Hk1|15275|hexokinase 1	AK149749|Hk1|15275|hexokinase 1
mm9_v1_chr11_+_3889935_3889935	0.577843	EOMES.p2	AK002510|Gal3st1|53897|galactose-3-O-sulfotransferase 1	NM_001177691|Gal3st1|53897|galactose-3-O-sulfotransferase 1
mm9_v1_chr2_-_121206675_121206675	0.577586	EOMES.p2	AF375593|Strc|140476|stereocilin	NM_080459|Strc|140476|stereocilin
mm9_v1_chr6_+_108163089_108163111	0.575745	EOMES.p2	AK047719|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	AK137477|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	NM_010585|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	X15373|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1
mm9_v1_chr7_+_130521491_130521589	0.575314	EOMES.p2	NM_025304|Lcmt1|30949|leucine carboxyl methyltransferase 1	AK003424|Lcmt1|30949|leucine carboxyl methyltransferase 1	BC132507|Lcmt1|30949|leucine carboxyl methyltransferase 1	BC132509|Lcmt1|30949|leucine carboxyl methyltransferase 1	BC145301|Lcmt1|30949|leucine carboxyl methyltransferase 1
mm9_v1_chr9_+_37015872_37015947	0.574702	EOMES.p2	AK161115|Tmem218|66279|transmembrane protein 218	BC034160|Tmem218|66279|transmembrane protein 218	NM_025464|Tmem218|66279|transmembrane protein 218	AK003010|Tmem218|66279|transmembrane protein 218	AK007575|Tmem218|66279|transmembrane protein 218	AK008902|Tmem218|66279|transmembrane protein 218
mm9_v1_chr6_-_72382855_72382865	0.573935	EOMES.p2	
mm9_v1_chr5_+_3803163_3803177	0.573096	EOMES.p2	NM_001170552|Krit1|79264|KRIT1, ankyrin repeat containing	NM_030675|Krit1|79264|KRIT1, ankyrin repeat containing
mm9_v1_chr12_+_3960002_3960129	0.567883	EOMES.p2	M30489|Pomc|18976|pro-opiomelanocortin-alpha
mm9_v1_chr8_-_74533511_74533524	0.567175	EOMES.p2	BC013494|Cyp4f18|72054|cytochrome P450, family 4, subfamily f, polypeptide 18	AF233647|Cyp4f18|72054|cytochrome P450, family 4, subfamily f, polypeptide 18	AK007863|Cyp4f18|72054|cytochrome P450, family 4, subfamily f, polypeptide 18	NM_024444|Cyp4f18|72054|cytochrome P450, family 4, subfamily f, polypeptide 18
mm9_v1_chr3_-_115832605_115832605	0.560274	EOMES.p2	BC029823|Vcam1|22329|vascular cell adhesion molecule 1	NM_011693|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chr14_-_100548982_100549014	0.558118	EOMES.p2	AB221575|Klf12|16597|Kruppel-like factor 12	Y14295|Klf12|16597|Kruppel-like factor 12	BC067408|Klf12|16597|Kruppel-like factor 12	NM_010636|Klf12|16597|Kruppel-like factor 12
mm9_v1_chrX_-_131285919_131285957	0.557707	EOMES.p2	BC027264|Armcx6|278097|armadillo repeat containing, X-linked 6	AK148507|Armcx6|278097|armadillo repeat containing, X-linked 6	AK160766|Armcx6|278097|armadillo repeat containing, X-linked 6	NM_001007578|Armcx6|278097|armadillo repeat containing, X-linked 6
mm9_v1_chr9_+_15043488_15043639	0.556278	EOMES.p2	AK008621|2200002K05Rik|69137|RIKEN cDNA 2200002K05 gene	AK034938|2200002K05Rik|69137|RIKEN cDNA 2200002K05 gene	NM_026955|2200002K05Rik|69137|RIKEN cDNA 2200002K05 gene	BC055786|2200002K05Rik|69137|RIKEN cDNA 2200002K05 gene
mm9_v1_chr17_-_24135049_24135066	0.553685	EOMES.p2	AB010778|Prss22|70835|protease, serine, 22	BC055854|Prss22|70835|protease, serine, 22	AK014645|Prss22|70835|protease, serine, 22	NM_133731|Prss22|70835|protease, serine, 22
mm9_v1_chr7_+_3394458_3394458	0.551833	EOMES.p2	AF361350|Cacng8|81905|calcium channel, voltage-dependent, gamma subunit 8	NM_133190|Cacng8|81905|calcium channel, voltage-dependent, gamma subunit 8
mm9_v1_chr14_-_65671577_65671651	0.54996	EOMES.p2	BC038525|Extl3|54616|exostoses (multiple)-like 3
mm9_v1_chr1_+_136007818_136007852	0.548732	EOMES.p2	AK009012|Chit1|71884|chitinase 1 (chitotriosidase)	AY458654|Chit1|71884|chitinase 1 (chitotriosidase)	NM_027979|Chit1|71884|chitinase 1 (chitotriosidase)	BC138765|Chit1|71884|chitinase 1 (chitotriosidase)
mm9_v1_chr3_-_86352170_86352368	0.548074	EOMES.p2	BC046628|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK053645|Mab21l2|23937|mab-21-like 2 (C. elegans)	NM_011839|Mab21l2|23937|mab-21-like 2 (C. elegans)	BC058730|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK144373|Mab21l2|23937|mab-21-like 2 (C. elegans)
mm9_v1_chr7_-_115210309_115210309	0.547921	EOMES.p2	NM_020291|Olfr480|56861|olfactory receptor 480
mm9_v1_chr9_+_86636433_86636473	0.546451	EOMES.p2	NM_178738|Prss35|244954|protease, serine, 35	AK030671|Prss35|244954|protease, serine, 35	AK031411|Prss35|244954|protease, serine, 35	AK031644|Prss35|244954|protease, serine, 35	AK076281|Prss35|244954|protease, serine, 35	BC075675|Prss35|244954|protease, serine, 35	DQ223037|Prss35|244954|protease, serine, 35
mm9_v1_chr6_-_48395440_48395605	0.546253	EOMES.p2	AK080480|Zfp467|68910|zinc finger protein 467	AK140205|Zfp467|68910|zinc finger protein 467	BC029859|Zfp467|68910|zinc finger protein 467	AK163508|Zfp467|68910|zinc finger protein 467	BC140975|Zfp467|68910|zinc finger protein 467	AB041616|Zfp467|68910|zinc finger protein 467
mm9_v1_chr6_-_118361541_118361556	0.545464	EOMES.p2	BC030906|Bms1|213895|BMS1 homolog, ribosome assembly protein (yeast)
mm9_v1_chr15_+_74346624_74346672	0.541979	EOMES.p2	AK147607|Bai1|107831|brain-specific angiogenesis inhibitor 1	NM_174991|Bai1|107831|brain-specific angiogenesis inhibitor 1	AK147456|Bai1|107831|brain-specific angiogenesis inhibitor 1	AK147459|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr14_+_65885454_65885579	0.541594	EOMES.p2	AK164657|Fbxo16|50759|F-box protein 16	AK081947|Fbxo16|50759|F-box protein 16	AF176531|Fbxo16|50759|F-box protein 16	NM_015795|Fbxo16|50759|F-box protein 16	AK043554|Fbxo16|50759|F-box protein 16	BC086690|Fbxo16|50759|F-box protein 16	BC115890|Fbxo16|50759|F-box protein 16
mm9_v1_chr15_+_102038697_102038697	0.541265	EOMES.p2	BC030410|Zfp740|68744|zinc finger protein 740	NM_153194|Zfp740|68744|zinc finger protein 740
mm9_v1_chr4_+_132530088_132530093	0.540885	EOMES.p2	AK036438|Fgr|14191|Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog
mm9_v1_chr13_-_99032887_99032971	0.540254	EOMES.p2	AY151261|Utp15|105372|UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)	AK165546|Utp15|105372|UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)	AK049186|Utp15|105372|UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)	BC065057|Utp15|105372|UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)	NM_178918|Utp15|105372|UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)	AK162794|Utp15|105372|UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)	AK087928|Utp15|105372|UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)
mm9_v1_chr15_-_43002356_43002397	0.538851	EOMES.p2	AK087485|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	NM_172815|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK052457|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK049891|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)
mm9_v1_chr4_-_137869546_137869914	0.536922	EOMES.p2	AK219773|Pink1|68943|PTEN induced putative kinase 1	AK196813|Pink1|68943|PTEN induced putative kinase 1	AK190338|Pink1|68943|PTEN induced putative kinase 1	AK190010|Pink1|68943|PTEN induced putative kinase 1	AK219694|Pink1|68943|PTEN induced putative kinase 1	AK213324|Pink1|68943|PTEN induced putative kinase 1	AK218284|Pink1|68943|PTEN induced putative kinase 1	AK205601|Pink1|68943|PTEN induced putative kinase 1	AK182588|Pink1|68943|PTEN induced putative kinase 1	AK219274|Pink1|68943|PTEN induced putative kinase 1	AK179666|Pink1|68943|PTEN induced putative kinase 1
mm9_v1_chr16_+_17759703_17759801	0.536549	EOMES.p2	NM_145479|Klhl22|224023|kelch-like 22 (Drosophila)	AK086748|Klhl22|224023|kelch-like 22 (Drosophila)	AK012046|Klhl22|224023|kelch-like 22 (Drosophila)	AK028197|Klhl22|224023|kelch-like 22 (Drosophila)	AK030669|Klhl22|224023|kelch-like 22 (Drosophila)	AK143514|Klhl22|224023|kelch-like 22 (Drosophila)
mm9_v1_chr8_+_95425293_95425305	0.528915	EOMES.p2	NM_027112|Capns2|69543|calpain, small subunit 2	AK009171|Capns2|69543|calpain, small subunit 2
mm9_v1_chr2_+_32087125_32087136	0.527498	EOMES.p2	AK161103|Prrc2b|227723|proline-rich coiled-coil 2B
mm9_v1_chr19_+_6226400_6226412	0.523811	EOMES.p2	AF260740|Gpha2|170458|glycoprotein hormone alpha 2	BC062804|Gpha2|170458|glycoprotein hormone alpha 2	NM_130453|Gpha2|170458|glycoprotein hormone alpha 2	BC132274|Gpha2|170458|glycoprotein hormone alpha 2	BC132562|Gpha2|170458|glycoprotein hormone alpha 2
mm9_v1_chr3_+_144955435_144955435	0.519736	EOMES.p2	DQ157748|Col24a1|71355|collagen, type XXIV, alpha 1	NM_027770|Col24a1|71355|collagen, type XXIV, alpha 1
mm9_v1_chr11_-_50244605_50244617	0.517384	EOMES.p2	AK046633|Rufy1|216724|RUN and FYVE domain containing 1	NM_172557|Rufy1|216724|RUN and FYVE domain containing 1	AK051178|Rufy1|216724|RUN and FYVE domain containing 1
mm9_v1_chr5_-_31505192_31505291	0.515075	EOMES.p2	
mm9_v1_chr10_+_79151764_79151895	0.512846	EOMES.p2	AB015728|Gzmm|16904|granzyme M (lymphocyte met-ase 1)	NM_008504|Gzmm|16904|granzyme M (lymphocyte met-ase 1)	BC139217|Gzmm|16904|granzyme M (lymphocyte met-ase 1)	BC139218|Gzmm|16904|granzyme M (lymphocyte met-ase 1)	BC145578|Gzmm|16904|granzyme M (lymphocyte met-ase 1)	BC145579|Gzmm|16904|granzyme M (lymphocyte met-ase 1)
mm9_v1_chr19_-_4785312_4785318	0.512597	EOMES.p2	
mm9_v1_chr11_-_95703462_95703476	0.512256	EOMES.p2	BC058260|Abi3|66610|ABI gene family, member 3	AK172098|Abi3|66610|ABI gene family, member 3	AK018381|Abi3|66610|ABI gene family, member 3	AK008928|Abi3|66610|ABI gene family, member 3	AK033965|Abi3|66610|ABI gene family, member 3	AK162728|Abi3|66610|ABI gene family, member 3
mm9_v1_chr3_+_96433850_96433878	0.509606	EOMES.p2	NM_001102407|Rbm8a|60365|RNA binding motif protein 8a	NM_025875|Rbm8a|60365|RNA binding motif protein 8a	AK009953|Rbm8a|60365|RNA binding motif protein 8a	AK010284|Rbm8a|60365|RNA binding motif protein 8a	AK011215|Rbm8a|60365|RNA binding motif protein 8a	AK082925|Rbm8a|60365|RNA binding motif protein 8a	BC020086|Rbm8a|60365|RNA binding motif protein 8a	BC058376|Rbm8a|60365|RNA binding motif protein 8a
mm9_v1_chr12_-_86447380_86447380	0.509583	EOMES.p2	AK051700|Prox2|73422|prospero homeobox 2	NM_175198|Prox2|73422|prospero homeobox 2
mm9_v1_chr12_-_53129049_53129152	0.508562	EOMES.p2	AF045766|Gpr33|14762|G protein-coupled receptor 33	BC064084|Gpr33|14762|G protein-coupled receptor 33	NM_008159|Gpr33|14762|G protein-coupled receptor 33	GQ981323|Gpr33|14762|G protein-coupled receptor 33	GQ981327|Gpr33|14762|G protein-coupled receptor 33
mm9_v1_chr8_+_114464581_114464637	0.505324	EOMES.p2	AK013563|Gabarapl2|93739|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	AK134873|Gabarapl2|93739|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	AF190644|Gabarapl2|93739|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	BC081436|Gabarapl2|93739|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	NM_026693|Gabarapl2|93739|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	AK002596|Gabarapl2|93739|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	AK049819|Gabarapl2|93739|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2
mm9_v1_chr5_-_137974398_137974535	0.498929	EOMES.p2	BC062178|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	AK002604|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	AK151628|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	NM_010312|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	Y11970|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	AK146941|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2
mm9_v1_chr19_-_7557690_7557778	0.497057	EOMES.p2	BC079882|Rtn3|20168|reticulon 3	BC014697|Rtn3|20168|reticulon 3	AK075883|Rtn3|20168|reticulon 3	AK165683|Rtn3|20168|reticulon 3	AK088670|Rtn3|20168|reticulon 3	AK049845|Rtn3|20168|reticulon 3	AF195940|Rtn3|20168|reticulon 3	AK148792|Rtn3|20168|reticulon 3	AK148947|Rtn3|20168|reticulon 3	AK036892|Rtn3|20168|reticulon 3	AK032109|Rtn3|20168|reticulon 3	AY427822|Rtn3|20168|reticulon 3	AY750849|Rtn3|20168|reticulon 3	AB046114|Rtn3|20168|reticulon 3	AY164700|Rtn3|20168|reticulon 3	NM_053076|Rtn3|20168|reticulon 3	NM_001003933|Rtn3|20168|reticulon 3	NM_001003934|Rtn3|20168|reticulon 3
mm9_v1_chr6_+_50150160_50150179	0.486669	EOMES.p2	AK047380|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
mm9_v1_chr19_-_11715256_11715340	0.483747	EOMES.p2	BC117013|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3	BC117015|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3	BC144853|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3	AF280401|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3	AF321128|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3	AY184359|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3	AK036464|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3	NM_133246|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3	AK158372|Ms4a3|170813|membrane-spanning 4-domains, subfamily A, member 3
mm9_v1_chr2_+_164158497_164158520	0.48288	EOMES.p2	AK007282|Svs5|20944|seminal vesicle secretory protein 5	BC114349|Svs5|20944|seminal vesicle secretory protein 5	NM_009301|Svs5|20944|seminal vesicle secretory protein 5	X63161|Svs5|20944|seminal vesicle secretory protein 5
mm9_v1_chr10_-_85379640_85379767	0.48204	EOMES.p2	AK028414|Prdm4|72843|PR domain containing 4	NM_181650|Prdm4|72843|PR domain containing 4
mm9_v1_chr10_+_93103715_93103796	0.481153	EOMES.p2	NM_021320|Ntn4|57764|netrin 4
mm9_v1_chr2_-_167124096_167124195	0.479917	EOMES.p2	
mm9_v1_chr14_+_32064648_32064674	0.479114	EOMES.p2	AK079374|Bap1|104416|Brca1 associated protein 1	AK170576|Bap1|104416|Brca1 associated protein 1	AK171561|Bap1|104416|Brca1 associated protein 1	NM_027088|Bap1|104416|Brca1 associated protein 1
mm9_v1_chr9_-_32151821_32151934	0.47672	EOMES.p2	AK052891|Kcnj5|16521|potassium inwardly-rectifying channel, subfamily J, member 5	AK164058|Kcnj5|16521|potassium inwardly-rectifying channel, subfamily J, member 5	NM_010605|Kcnj5|16521|potassium inwardly-rectifying channel, subfamily J, member 5	AK137600|Kcnj5|16521|potassium inwardly-rectifying channel, subfamily J, member 5
mm9_v1_chr6_-_130336891_130336991	0.475612	EOMES.p2	AY078436|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	NM_016659|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	AF419250|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	AF444273|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1
mm9_v1_chr3_+_17954500_17954591	0.47493	EOMES.p2	AK047201|Bhlhe22|59058|basic helix-loop-helix family, member e22
mm9_v1_chr5_-_100927591_100927596	0.473617	EOMES.p2	AK030894|Lin54|231506|lin-54 homolog (C. elegans)	NM_001115010|Lin54|231506|lin-54 homolog (C. elegans)	AK028016|Lin54|231506|lin-54 homolog (C. elegans)
mm9_v1_chr1_-_74552346_74552441	0.473275	EOMES.p2	BC114208|Usp37|319651|ubiquitin specific peptidase 37	AK035640|Usp37|319651|ubiquitin specific peptidase 37
mm9_v1_chr5_-_137918291_137918291	0.471411	EOMES.p2	NM_011741|Zan|22635|zonadhesin	U97068|Zan|22635|zonadhesin
mm9_v1_chr4_+_103237118_103237275	0.466537	EOMES.p2	BC008258|Actg1|11465|actin, gamma, cytoplasmic 1	AK184769|Actg1|11465|actin, gamma, cytoplasmic 1
mm9_v1_chr5_-_144266956_144266980	0.4664	EOMES.p2	
mm9_v1_chr7_+_87406066_87406184	0.465531	EOMES.p2	NM_031375|Ngrn|83485|neugrin, neurite outgrowth associated	AK083330|Ngrn|83485|neugrin, neurite outgrowth associated	AK144756|Ngrn|83485|neugrin, neurite outgrowth associated	BC004034|Ngrn|83485|neugrin, neurite outgrowth associated	AK146059|Ngrn|83485|neugrin, neurite outgrowth associated	AB047544|Ngrn|83485|neugrin, neurite outgrowth associated
mm9_v1_chr6_+_129462572_129462636	0.464697	EOMES.p2	AK085389|D630042F21Rik|330428|RIKEN cDNA D630042F21 gene	NM_001081186|D630042F21Rik|330428|RIKEN cDNA D630042F21 gene	AK085571|D630042F21Rik|330428|RIKEN cDNA D630042F21 gene
mm9_v1_chr16_-_4790212_4790249	0.464684	EOMES.p2	AK166141|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene
mm9_v1_chr17_+_34462609_34462619	0.463658	EOMES.p2	AK157199|H2-Eb2|381091|histocompatibility 2, class II antigen E beta2	AK137912|H2-Eb2|381091|histocompatibility 2, class II antigen E beta2	BC150834|H2-Eb2|381091|histocompatibility 2, class II antigen E beta2	NM_001033978|H2-Eb2|381091|histocompatibility 2, class II antigen E beta2
mm9_v1_chr5_-_115750913_115750938	0.463296	EOMES.p2	BC008106|Dynll1|56455|dynein light chain LC8-type 1	BC034258|Dynll1|56455|dynein light chain LC8-type 1	AF020185|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr7_-_148629877_148629949	0.462343	EOMES.p2	BC089373|Lrdd|57913|leucine-rich and death domain containing	BC099686|Lrdd|57913|leucine-rich and death domain containing	BC056987|Lrdd|57913|leucine-rich and death domain containing	AK004702|Lrdd|57913|leucine-rich and death domain containing	AK087880|Lrdd|57913|leucine-rich and death domain containing	AK156863|Lrdd|57913|leucine-rich and death domain containing
mm9_v1_chr14_+_58691522_58691522	0.461109	EOMES.p2	AK158782|Fgf9|14180|fibroblast growth factor 9	NM_013518|Fgf9|14180|fibroblast growth factor 9
mm9_v1_chr12_-_11215753_11215777	0.461044	EOMES.p2	AF261105|Msgn1|56184|mesogenin 1	NM_019544|Msgn1|56184|mesogenin 1	BC116996|Msgn1|56184|mesogenin 1
mm9_v1_chr3_+_132772586_132772695	0.458859	EOMES.p2	AK015941|Ints12|71793|integrator complex subunit 12
mm9_v1_chr6_+_57653067_57653080	0.457162	EOMES.p2	AK005632|Lancl2|71835|LanC (bacterial lantibiotic synthetase component C)-like 2
mm9_v1_chr11_-_72609306_72609347	0.457005	EOMES.p2	BC086682|Cyb5d2|192986|cytochrome b5 domain containing 2	NM_001024926|Cyb5d2|192986|cytochrome b5 domain containing 2	AK142515|Cyb5d2|192986|cytochrome b5 domain containing 2
mm9_v1_chr17_-_24336901_24336901	0.452355	EOMES.p2	AK049306|Tbc1d24|224617|TBC1 domain family, member 24	AK161054|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163852|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163853|Tbc1d24|224617|TBC1 domain family, member 24
mm9_v1_chr16_+_43762333_43762354	0.450937	EOMES.p2	BC119286|Drd3|13490|dopamine receptor D3	BC137819|Drd3|13490|dopamine receptor D3	NM_007877|Drd3|13490|dopamine receptor D3	X67274|Drd3|13490|dopamine receptor D3
mm9_v1_chr3_+_105255444_105255490	0.45041	EOMES.p2	AK033962|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr4_+_135866879_135866952	0.449744	EOMES.p2	AK152039|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK147043|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	BC038051|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	NM_028871|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK144682|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK141145|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK145849|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK133840|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK011307|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK144992|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	BC004679|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R
mm9_v1_chr7_-_118214471_118214595	0.44842	EOMES.p2	AK153701|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr6_-_135068260_135068300	0.445379	EOMES.p2	BC119192|Gprc5d|93746|G protein-coupled receptor, family C, group 5, member D	BC119194|Gprc5d|93746|G protein-coupled receptor, family C, group 5, member D	AK137739|Gprc5d|93746|G protein-coupled receptor, family C, group 5, member D	AF218809|Gprc5d|93746|G protein-coupled receptor, family C, group 5, member D	NM_053118|Gprc5d|93746|G protein-coupled receptor, family C, group 5, member D
mm9_v1_chr1_-_31006558_31006594	0.445316	EOMES.p2	BC055039|Ptp4a1|19243|protein tyrosine phosphatase 4a1	U84411|Ptp4a1|19243|protein tyrosine phosphatase 4a1
mm9_v1_chr2_+_123915670_123915704	0.441109	EOMES.p2	AK122515|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr7_-_133727793_133727820	0.440354	EOMES.p2	NM_001146311|Cln3|12752|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	BC047120|Cln3|12752|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
mm9_v1_chr4_-_108311676_108311740	0.439802	EOMES.p2	
mm9_v1_chr7_+_16132605_16132645	0.43961	EOMES.p2	NM_027802|Obox1|71468|oocyte specific homeobox 1	AK018362|Obox1|71468|oocyte specific homeobox 1	AK136061|Obox1|71468|oocyte specific homeobox 1	BC141323|Obox1|71468|oocyte specific homeobox 1	BC141324|Obox1|71468|oocyte specific homeobox 1
mm9_v1_chr11_-_99250663_99250679	0.439116	EOMES.p2	AK014360|Krt10|16661|keratin 10	V00830|Krt10|16661|keratin 10	AK076508|Krt10|16661|keratin 10	AK081914|Krt10|16661|keratin 10	AK081402|Krt10|16661|keratin 10	NM_010660|Krt10|16661|keratin 10
mm9_v1_chr5_-_33590505_33590587	0.438294	EOMES.p2	
mm9_v1_chr4_+_40419212_40419212	0.436753	EOMES.p2	AK044217|Tmem215|320500|transmembrane protein 215	AK044627|Tmem215|320500|transmembrane protein 215	NM_177175|Tmem215|320500|transmembrane protein 215
mm9_v1_chr7_+_109231629_109231682	0.434981	EOMES.p2	AF230803|Trpc2|22064|transient receptor potential cation channel, subfamily C, member 2	NM_001109897|Trpc2|22064|transient receptor potential cation channel, subfamily C, member 2
mm9_v1_chr8_+_72657386_72657401	0.432439	EOMES.p2	
mm9_v1_chr3_-_95686120_95686174	0.43108	EOMES.p2	AK156084|Gm129|229599|predicted gene 129	AK164001|Gm129|229599|predicted gene 129	NM_001033302|Gm129|229599|predicted gene 129
mm9_v1_chr8_-_10928326_10928456	0.430288	EOMES.p2	AK014460|3930402G23Rik|665306|RIKEN cDNA 3930402G23 gene
mm9_v1_chr3_-_146433200_146433208	0.430135	EOMES.p2	NM_001164198|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr15_-_98661877_98661941	0.429599	EOMES.p2	AK159583|Prkag1|19082|protein kinase, AMP-activated, gamma 1 non-catalytic subunit	BC086660|Prkag1|19082|protein kinase, AMP-activated, gamma 1 non-catalytic subunit	AK138324|Prkag1|19082|protein kinase, AMP-activated, gamma 1 non-catalytic subunit	AF036535|Prkag1|19082|protein kinase, AMP-activated, gamma 1 non-catalytic subunit	NM_016781|Prkag1|19082|protein kinase, AMP-activated, gamma 1 non-catalytic subunit
mm9_v1_chr16_-_88648032_88648040	0.429464	EOMES.p2	BC128283|Krtap26-1|69533|keratin associated protein 26-1	BC139410|Krtap26-1|69533|keratin associated protein 26-1	BC139411|Krtap26-1|69533|keratin associated protein 26-1	AK009086|Krtap26-1|69533|keratin associated protein 26-1	NM_027105|Krtap26-1|69533|keratin associated protein 26-1
mm9_v1_chr12_-_81537525_81537603	0.428912	EOMES.p2	BC046813|Dcaf5|320808|DDB1 and CUL4 associated factor 5	AK165096|Dcaf5|320808|DDB1 and CUL4 associated factor 5	AK137579|Dcaf5|320808|DDB1 and CUL4 associated factor 5	NM_177267|Dcaf5|320808|DDB1 and CUL4 associated factor 5
mm9_v1_chr6_+_122503826_122503835	0.427844	EOMES.p2	NM_009645|Aicda|11628|activation-induced cytidine deaminase	AF132979|Aicda|11628|activation-induced cytidine deaminase
mm9_v1_chr10_-_111434231_111434250	0.427103	EOMES.p2	BC025083|Glipr1|73690|GLI pathogenesis-related 1 (glioma)	AK155009|Glipr1|73690|GLI pathogenesis-related 1 (glioma)	AK010768|Glipr1|73690|GLI pathogenesis-related 1 (glioma)
mm9_v1_chr6_-_89795530_89795608	0.423747	EOMES.p2	NM_053221|Vmn1r42|113848|vomeronasal 1 receptor 42	BC125372|Vmn1r42|113848|vomeronasal 1 receptor 42
mm9_v1_chr4_-_128483355_128483429	0.423326	EOMES.p2	NM_001081098|Zfp362|230761|zinc finger protein 362
mm9_v1_chrX_-_146875621_146875705	0.422265	EOMES.p2	BC058428|Tmem29|382245|transmembrane protein 29	AK018228|Tmem29|382245|transmembrane protein 29	NM_001164684|Tmem29|382245|transmembrane protein 29	AK165152|Tmem29|382245|transmembrane protein 29
mm9_v1_chr3_+_66789859_66789903	0.42106	EOMES.p2	BC043045|Rsrc1|66880|arginine/serine-rich coiled-coil 1
mm9_v1_chr4_+_151490451_151490509	0.420402	EOMES.p2	BC017526|Tnfrsf25|85030|tumor necrosis factor receptor superfamily, member 25	NM_033042|Tnfrsf25|85030|tumor necrosis factor receptor superfamily, member 25	AK040632|Tnfrsf25|85030|tumor necrosis factor receptor superfamily, member 25
mm9_v1_chr13_+_113999866_114000016	0.420149	EOMES.p2	BC051919|Esm1|71690|endothelial cell-specific molecule 1	NM_023612|Esm1|71690|endothelial cell-specific molecule 1	AK002913|Esm1|71690|endothelial cell-specific molecule 1	BC020038|Esm1|71690|endothelial cell-specific molecule 1	BC147648|Esm1|71690|endothelial cell-specific molecule 1	BC147650|Esm1|71690|endothelial cell-specific molecule 1	AJ249354|Esm1|71690|endothelial cell-specific molecule 1
mm9_v1_chr3_-_115832278_115832299	0.419899	EOMES.p2	CT010373|Vcam1|22329|vascular cell adhesion molecule 1	X67783|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chr17_+_29272000_29272000	0.41776	EOMES.p2	AK036563|Rab44|442827|RAB44, member RAS oncogene family	NM_001002786|Rab44|442827|RAB44, member RAS oncogene family
mm9_v1_chr17_-_82137708_82137731	0.417523	EOMES.p2	AF004666|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_001112798|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_011406|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	U70033|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	AK084813|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene	AK085810|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene
mm9_v1_chr13_-_67198911_67198911	0.415888	EOMES.p2	NM_001012325|Zfp708|432769|zinc finger protein 708	NM_001012449|Zfp708|432769|zinc finger protein 708
mm9_v1_chr15_-_36426471_36426537	0.413604	EOMES.p2	AK088304|Ankrd46|68839|ankyrin repeat domain 46	AK148049|Ankrd46|68839|ankyrin repeat domain 46	BC094595|Ankrd46|68839|ankyrin repeat domain 46	BC086659|Ankrd46|68839|ankyrin repeat domain 46
mm9_v1_chr4_+_115894231_115894261	0.412703	EOMES.p2	AK036105|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	AK132341|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	AK163413|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	AK161822|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm9_v1_chr13_-_58456221_58456222	0.411545	EOMES.p2	BC116646|Kif27|75050|kinesin family member 27	NM_175214|Kif27|75050|kinesin family member 27
mm9_v1_chr9_+_124036265_124036352	0.41095	EOMES.p2	AK154595|Ccr5|12774|chemokine (C-C motif) receptor 5	NM_009917|Ccr5|12774|chemokine (C-C motif) receptor 5	AK141906|Ccr5|12774|chemokine (C-C motif) receptor 5	AK155632|Ccr5|12774|chemokine (C-C motif) receptor 5	AK170303|Ccr5|12774|chemokine (C-C motif) receptor 5	D83648|Ccr5|12774|chemokine (C-C motif) receptor 5	AK155628|Ccr5|12774|chemokine (C-C motif) receptor 5	AK155867|Ccr5|12774|chemokine (C-C motif) receptor 5	X94151|Ccr5|12774|chemokine (C-C motif) receptor 5	BC105643|Ccr5|12774|chemokine (C-C motif) receptor 5	BC103574|Ccr5|12774|chemokine (C-C motif) receptor 5	BC103586|Ccr5|12774|chemokine (C-C motif) receptor 5	BC103587|Ccr5|12774|chemokine (C-C motif) receptor 5	U47036|Ccr5|12774|chemokine (C-C motif) receptor 5
mm9_v1_chr19_-_45892512_45892542	0.409754	EOMES.p2	
mm9_v1_chr14_-_99445271_99445388	0.409631	EOMES.p2	AK168114|Mzt1|76789|mitotic spindle organizing protein 1	AK047481|Mzt1|76789|mitotic spindle organizing protein 1	AK082817|Mzt1|76789|mitotic spindle organizing protein 1	AK087564|Mzt1|76789|mitotic spindle organizing protein 1	AK169036|Mzt1|76789|mitotic spindle organizing protein 1	AK170746|Mzt1|76789|mitotic spindle organizing protein 1	BC038168|Mzt1|76789|mitotic spindle organizing protein 1	AK165605|Mzt1|76789|mitotic spindle organizing protein 1	BC098481|Mzt1|76789|mitotic spindle organizing protein 1	AK150268|Mzt1|76789|mitotic spindle organizing protein 1	AK151232|Mzt1|76789|mitotic spindle organizing protein 1	AK151358|Mzt1|76789|mitotic spindle organizing protein 1	AK151819|Mzt1|76789|mitotic spindle organizing protein 1	AK010788|Mzt1|76789|mitotic spindle organizing protein 1	BC117005|Mzt1|76789|mitotic spindle organizing protein 1	BC117007|Mzt1|76789|mitotic spindle organizing protein 1	AK160911|Mzt1|76789|mitotic spindle organizing protein 1	NM_175245|Mzt1|76789|mitotic spindle organizing protein 1
mm9_v1_chr4_-_120597563_120597650	0.40676	EOMES.p2	BC023360|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)	AK014134|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)	NM_001160043|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)	NM_028457|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)
mm9_v1_chr10_-_18731766_18731781	0.402399	EOMES.p2	AK171326|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK172529|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	NM_001166402|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3
mm9_v1_chr6_+_83087016_83087103	0.399995	EOMES.p2	NM_009106|Rtkn|20166|rhotekin	NM_133641|Rtkn|20166|rhotekin	U54638|Rtkn|20166|rhotekin	BC013820|Rtkn|20166|rhotekin
mm9_v1_chr13_+_41744811_41744811	0.394896	EOMES.p2	AK037195|Gm5082|328231|predicted gene 5082	NM_177808|Gm5082|328231|predicted gene 5082
mm9_v1_chr2_+_3035629_3035684	0.392451	EOMES.p2	NM_001081161|Fam171a1|269233|family with sequence similarity 171, member A1	AK032237|Fam171a1|269233|family with sequence similarity 171, member A1
mm9_v1_chr12_-_86611513_86611563	0.39172	EOMES.p2	BC079861|Mlh3|217716|mutL homolog 3 (E coli)	NM_175337|Mlh3|217716|mutL homolog 3 (E coli)	BC072599|Mlh3|217716|mutL homolog 3 (E coli)	AK132195|Mlh3|217716|mutL homolog 3 (E coli)	AK035887|Mlh3|217716|mutL homolog 3 (E coli)
mm9_v1_chr19_-_7416071_7416084	0.386548	EOMES.p2	AK220191|Mark2|13728|MAP/microtubule affinity-regulating kinase 2
mm9_v1_chr18_+_37170365_37170627	0.386092	EOMES.p2	AK141960|Pcdha11|12942|protocadherin alpha 11	AK139436|Pcdha11|12942|protocadherin alpha 11	AK043705|Pcdha11|12942|protocadherin alpha 11	BC141349|Pcdha11|12942|protocadherin alpha 11	AY013758|Pcdha11|12942|protocadherin alpha 11	NM_009960|Pcdha11|12942|protocadherin alpha 11	AB008182|Pcdha11|12942|protocadherin alpha 11
mm9_v1_chr3_+_30501008_30501008	0.385842	EOMES.p2	BC065084|Mynn|80732|myoneurin	NM_030557|Mynn|80732|myoneurin
mm9_v1_chr3_+_68494565_68494565	0.385231	EOMES.p2	NM_001159424|Il12a|16159|interleukin 12a
mm9_v1_chr19_+_8915018_8915039	0.381709	EOMES.p2	AK004634|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK151606|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK155753|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK170183|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm9_v1_chrX_-_8563797_8563880	0.381575	EOMES.p2	BC104363|Fthl17|83457|ferritin, heavy polypeptide-like 17	AF285569|Fthl17|83457|ferritin, heavy polypeptide-like 17	NM_001099326|Gm14458|100042782|predicted gene 14458
mm9_v1_chr1_-_132783915_132783987	0.380792	EOMES.p2	AF333251|Il24|93672|interleukin 24	DQ401033|Il24|93672|interleukin 24	NM_053095|Il24|93672|interleukin 24
mm9_v1_chr2_-_177813129_177813180	0.376681	EOMES.p2	NM_001162922|Zfp931|353208|zinc finger protein 931	AK049261|Zfp931|353208|zinc finger protein 931	AK012776|Zfp931|353208|zinc finger protein 931	BC096373|Zfp931|353208|zinc finger protein 931
mm9_v1_chr9_-_114549261_114549332	0.374094	EOMES.p2	BC036179|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	BC039183|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	AK171701|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	AK161842|Cnot10|78893|CCR4-NOT transcription complex, subunit 10
mm9_v1_chr1_-_153937364_153937449	0.374081	EOMES.p2	AK144357|LOC545371|545371|hypothetical protein LOC545371	NM_197990|1700025G04Rik|69399|RIKEN cDNA 1700025G04 gene
mm9_v1_chr4_+_73888400_73888400	0.372809	EOMES.p2	BC042424|Kdm4c|76804|lysine (K)-specific demethylase 4C	NM_001172095|Kdm4c|76804|lysine (K)-specific demethylase 4C
mm9_v1_chr16_-_36408420_36408542	0.371827	EOMES.p2	M92418|Stfa2|20862|stefin A2	NM_001082545|Stfa2|20862|stefin A2	BC138004|Stfa2|20862|stefin A2
mm9_v1_chr3_-_90195440_90195485	0.368664	EOMES.p2	
mm9_v1_chr19_+_36629128_36629172	0.368331	EOMES.p2	AK142777|Hectd2|226098|HECT domain containing 2	NM_001163471|Hectd2|226098|HECT domain containing 2	NM_172637|Hectd2|226098|HECT domain containing 2	BC137671|Hectd2|226098|HECT domain containing 2	BC144815|Hectd2|226098|HECT domain containing 2	AK041629|Hectd2|226098|HECT domain containing 2	AK043646|Hectd2|226098|HECT domain containing 2	AK079321|Hectd2|226098|HECT domain containing 2
mm9_v1_chr15_+_80085613_80085722	0.367297	EOMES.p2	AK003001|Atf4|11911|activating transcription factor 4	NM_009716|Atf4|11911|activating transcription factor 4	BC085169|Atf4|11911|activating transcription factor 4
mm9_v1_chr5_-_96590868_96591008	0.367073	EOMES.p2	BC018506|Cnot6l|231464|CCR4-NOT transcription complex, subunit 6-like	NM_144910|Cnot6l|231464|CCR4-NOT transcription complex, subunit 6-like
mm9_v1_chr19_+_30078279_30078291	0.36561	EOMES.p2	AK016450|Trpd52l3|66745|tumor protein D52-like 3	BC125314|Trpd52l3|66745|tumor protein D52-like 3	BC125316|Trpd52l3|66745|tumor protein D52-like 3	NM_025741|Trpd52l3|66745|tumor protein D52-like 3	AK016362|Trpd52l3|66745|tumor protein D52-like 3
mm9_v1_chr9_-_114549148_114549229	0.364928	EOMES.p2	AK149944|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	AK167288|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	BC025554|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	AK029103|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	NM_153585|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	AK080503|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	AK157824|Cnot10|78893|CCR4-NOT transcription complex, subunit 10
mm9_v1_chr9_-_53514219_53514352	0.363796	EOMES.p2	AB232635|Rab39|270160|RAB39, member RAS oncogene family	BC049787|Rab39|270160|RAB39, member RAS oncogene family	AK053487|Rab39|270160|RAB39, member RAS oncogene family	AK049038|Rab39|270160|RAB39, member RAS oncogene family	NM_175562|Rab39|270160|RAB39, member RAS oncogene family
mm9_v1_chr3_-_153388047_153388152	0.362658	EOMES.p2	BC131987|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	BC132317|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	BC058387|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	AK034804|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	NM_011372|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	Y11342|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
mm9_v1_chr4_-_75779379_75779379	0.362654	EOMES.p2	AF326559|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	AF326560|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	NM_001014288|Ptprd|19266|protein tyrosine phosphatase, receptor type, D
mm9_v1_chr4_+_19745871_19745936	0.362419	EOMES.p2	AK002431|Slc7a13|74087|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	AK143768|Slc7a13|74087|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	AK128901|Slc7a13|74087|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	AK165403|Slc7a13|74087|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	NM_028746|Slc7a13|74087|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	AB072352|Slc7a13|74087|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	BC014684|Slc7a13|74087|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	AJ417662|Slc7a13|74087|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13
mm9_v1_chr10_-_79446910_79447074	0.360217	EOMES.p2	NM_001003949|ORF61|216157|open reading frame 61
mm9_v1_chr3_-_104580464_104580464	0.360121	EOMES.p2	AK078681|Fam19a3|329731|family with sequence similarity 19, member A3	NM_183224|Fam19a3|329731|family with sequence similarity 19, member A3
mm9_v1_chr10_-_41905549_41905563	0.359584	EOMES.p2	AK041595|Foxo3|56484|forkhead box O3	AK159465|Foxo3|56484|forkhead box O3
mm9_v1_chr6_-_28399248_28399339	0.358197	EOMES.p2	BC131908|Pax4|18506|paired box gene 4	BC131906|Pax4|18506|paired box gene 4	BC145168|Pax4|18506|paired box gene 4	BC145169|Pax4|18506|paired box gene 4	AB010557|Pax4|18506|paired box gene 4	AF145233|Pax4|18506|paired box gene 4	AB010558|Pax4|18506|paired box gene 4	AB008912|Pax4|18506|paired box gene 4	NM_001159925|Pax4|18506|paired box gene 4	NM_001159926|Pax4|18506|paired box gene 4	NM_011038|Pax4|18506|paired box gene 4
mm9_v1_chr11_-_99427891_99427943	0.355092	EOMES.p2	D86424|Krtap3-1|69473|keratin associated protein 3-1	BC060278|Krtap3-1|69473|keratin associated protein 3-1	NM_023511|Krtap3-1|69473|keratin associated protein 3-1
mm9_v1_chr17_-_25998459_25998461	0.354777	EOMES.p2	NM_001163766|Wdr90|106618|WD repeat domain 90
mm9_v1_chr3_-_81949667_81949798	0.352177	EOMES.p2	BC057327|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK031305|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK028558|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK004815|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AF297082|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	NM_021896|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3
mm9_v1_chr7_-_23929496_23929498	0.349552	EOMES.p2	AK139650|Gm5891|545929|predicted gene 5891	NM_001034904|Gm5891|545929|predicted gene 5891
mm9_v1_chr7_-_22706307_22706309	0.349552	EOMES.p2	AK139650|Gm5891|545929|predicted gene 5891	NM_001034904|Gm5891|545929|predicted gene 5891
mm9_v1_chr17_+_70911084_70911126	0.349328	EOMES.p2	NM_001128181|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK136926|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr3_+_89586320_89586446	0.348581	EOMES.p2	AK211403|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr9_+_74800828_74800859	0.34664	EOMES.p2	BC060215|BC031353|235493|cDNA sequence BC031353	NM_001113283|BC031353|235493|cDNA sequence BC031353
mm9_v1_chr9_-_107981630_107981631	0.343347	EOMES.p2	BC057082|Rnf123|84585|ring finger protein 123
mm9_v1_chr7_-_52381569_52381578	0.342283	EOMES.p2	BC034450|Rpl13a|22121|ribosomal protein L13A	BC042392|Rpl13a|22121|ribosomal protein L13A
mm9_v1_chr11_-_55125758_55125758	0.34063	EOMES.p2	NM_001029988|Fat2|245827|FAT tumor suppressor homolog 2 (Drosophila)
mm9_v1_chr9_-_82826139_82826181	0.340257	EOMES.p2	BC068022|Phip|83946|pleckstrin homology domain interacting protein
mm9_v1_chr16_-_32868355_32868453	0.339186	EOMES.p2	BC057307|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK042428|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK170223|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK122221|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK030368|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	BC060601|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	NM_172615|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK170002|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK171583|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	BC067390|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene
mm9_v1_chr17_+_17539908_17539941	0.336604	EOMES.p2	AF351204|Lix1|66643|limb expression 1 homolog (chicken)
mm9_v1_chr11_-_51670897_51671154	0.335585	EOMES.p2	AK147453|Phf15|76901|PHD finger protein 15	AK129097|Phf15|76901|PHD finger protein 15	NM_199299|Phf15|76901|PHD finger protein 15	AK004823|Phf15|76901|PHD finger protein 15
mm9_v1_chrX_+_17739762_17739792	0.335497	EOMES.p2	AK164941|Kdm6a|22289|4lysine (K)-specific demethylase 6A	AK144654|Kdm6a|22289|4lysine (K)-specific demethylase 6A	AK080370|Kdm6a|22289|4lysine (K)-specific demethylase 6A	BC053433|Kdm6a|22289|4lysine (K)-specific demethylase 6A	NM_009483|Kdm6a|22289|4lysine (K)-specific demethylase 6A
mm9_v1_chr19_-_8893358_8893513	0.332215	EOMES.p2	BC035304|Ttc9c|70387|tetratricopeptide repeat domain 9C	BC063773|Ttc9c|70387|tetratricopeptide repeat domain 9C
mm9_v1_chr9_-_61761227_61761271	0.332201	EOMES.p2	AK203941|Rplp1|56040|ribosomal protein, large, P1
mm9_v1_chrX_+_159339561_159339801	0.330664	EOMES.p2	AK084595|Ctps2|55936|cytidine 5'-triphosphate synthase 2	AK085381|Ctps2|55936|cytidine 5'-triphosphate synthase 2	BC003257|Ctps2|55936|cytidine 5'-triphosphate synthase 2	AK150966|Ctps2|55936|cytidine 5'-triphosphate synthase 2	AK151597|Ctps2|55936|cytidine 5'-triphosphate synthase 2	AK164206|Ctps2|55936|cytidine 5'-triphosphate synthase 2	AK032018|Ctps2|55936|cytidine 5'-triphosphate synthase 2
mm9_v1_chr3_-_127201974_127202032	0.329716	EOMES.p2	AK044634|Ank2|109676|ankyrin 2, brain
mm9_v1_chr19_+_5425119_5425264	0.328482	EOMES.p2	NM_134149|AI837181|107242|expressed sequence AI837181	BC024516|AI837181|107242|expressed sequence AI837181	BC017542|AI837181|107242|expressed sequence AI837181	U64690|AI837181|107242|expressed sequence AI837181
mm9_v1_chr10_+_80392814_80392835	0.328279	EOMES.p2	AK154952|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	AK010420|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	AK149895|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	BC023815|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	NM_008655|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	X54149|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta
mm9_v1_chr1_+_136391210_136391249	0.327281	EOMES.p2	AK133528|Rabif|98710|RAB interacting factor	AK165748|Rabif|98710|RAB interacting factor	AK158129|Rabif|98710|RAB interacting factor	AK165795|Rabif|98710|RAB interacting factor	BC011166|Rabif|98710|RAB interacting factor	NM_145510|Rabif|98710|RAB interacting factor	AK155054|Rabif|98710|RAB interacting factor	AK087547|Rabif|98710|RAB interacting factor	BC024808|Rabif|98710|RAB interacting factor
mm9_v1_chr6_+_30462285_30462303	0.325366	EOMES.p2	NM_029373|1700025E21Rik|75647|RIKEN cDNA 1700025E21 gene	AK006332|1700025E21Rik|75647|RIKEN cDNA 1700025E21 gene
mm9_v1_chr7_+_135021214_135021214	0.32419	EOMES.p2	BC079907|Zfp646|233905|zinc finger protein 646	NM_172749|Zfp646|233905|zinc finger protein 646
mm9_v1_chr6_+_114081375_114081412	0.324098	EOMES.p2	AK053261|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11	AK021402|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11
mm9_v1_chr15_-_54670878_54670918	0.323517	EOMES.p2	AK046689|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2
mm9_v1_chr7_-_111613624_111613716	0.323313	EOMES.p2	AF220014|Trim30a|20128|tripartite motif-containing 30A	J03776|Trim30a|20128|tripartite motif-containing 30A	BC005447|Trim30a|20128|tripartite motif-containing 30A	AK134144|Trim30a|20128|tripartite motif-containing 30A	AK089726|Trim30a|20128|tripartite motif-containing 30A	AK137506|Trim30a|20128|tripartite motif-containing 30A	NM_009099|Trim30a|20128|tripartite motif-containing 30A	AK138249|Trim30a|20128|tripartite motif-containing 30A
mm9_v1_chr17_+_37079995_37080032	0.323144	EOMES.p2	BC132405|Rnf39|386454|ring finger protein 39	BC145677|Rnf39|386454|ring finger protein 39	NM_001099632|Rnf39|386454|ring finger protein 39
mm9_v1_chr18_+_37633193_37633199	0.319462	EOMES.p2	BC066178|Pcdhb15|93886|protocadherin beta 15	AK038663|Pcdhb15|93886|protocadherin beta 15	NM_053140|Pcdhb15|93886|protocadherin beta 15
mm9_v1_chr15_+_34767109_34767135	0.316835	EOMES.p2	AK173110|Kcns2|16539|K+ voltage-gated channel, subfamily S, 2	AK048819|Kcns2|16539|K+ voltage-gated channel, subfamily S, 2	NM_181317|Kcns2|16539|K+ voltage-gated channel, subfamily S, 2
mm9_v1_chr15_+_75824198_75824279	0.315265	EOMES.p2	BC048082|Mapk15|332110|mitogen-activated protein kinase 15	NM_177922|Mapk15|332110|mitogen-activated protein kinase 15
mm9_v1_chr8_+_3470861_3470861	0.313529	EOMES.p2	BC050809|1700019B03Rik|76406|RIKEN cDNA 1700019B03 gene	NM_029598|1700019B03Rik|76406|RIKEN cDNA 1700019B03 gene
mm9_v1_chr12_+_39506844_39506916	0.31333	EOMES.p2	NM_007960|Etv1|14009|ets variant gene 1	L10426|Etv1|14009|ets variant gene 1	AK144713|Etv1|14009|ets variant gene 1	BC005645|Etv1|14009|ets variant gene 1
mm9_v1_chr15_-_98764817_98764871	0.312636	EOMES.p2	BC063777|Tuba1b|22143|tubulin, alpha 1B	BC108394|Tuba1b|22143|tubulin, alpha 1B	NM_011654|Tuba1b|22143|tubulin, alpha 1B	M13446|Tuba1b|22143|tubulin, alpha 1B	BC083120|Tuba1b|22143|tubulin, alpha 1B	BC108337|Tuba1b|22143|tubulin, alpha 1B	BC008117|Tuba1b|22143|tubulin, alpha 1B	BC098321|Tuba1b|22143|tubulin, alpha 1B	BC002219|Tuba1b|22143|tubulin, alpha 1B	AK151199|Tuba1b|22143|tubulin, alpha 1B	AK151809|Tuba1b|22143|tubulin, alpha 1B	AK152298|Tuba1b|22143|tubulin, alpha 1B	AK153254|Tuba1b|22143|tubulin, alpha 1B	AK137885|Tuba1b|22143|tubulin, alpha 1B	AK153064|Tuba1b|22143|tubulin, alpha 1B	AK168770|Tuba1b|22143|tubulin, alpha 1B	AK169075|Tuba1b|22143|tubulin, alpha 1B	AK150968|Tuba1b|22143|tubulin, alpha 1B	AK075955|Tuba1b|22143|tubulin, alpha 1B	AK150128|Tuba1b|22143|tubulin, alpha 1B	AK150179|Tuba1b|22143|tubulin, alpha 1B	AK164428|Tuba1b|22143|tubulin, alpha 1B	AK169092|Tuba1b|22143|tubulin, alpha 1B	AK169130|Tuba1b|22143|tubulin, alpha 1B	AK169665|Tuba1b|22143|tubulin, alpha 1B
mm9_v1_chr17_+_37079857_37079925	0.312129	EOMES.p2	BC051578|Rnf39|386454|ring finger protein 39	BC038661|Rnf39|386454|ring finger protein 39
mm9_v1_chr1_+_165860156_165860230	0.312053	EOMES.p2	AK004809|Scyl3|240880|SCY1-like 3 (S. cerevisiae)	BC043085|Scyl3|240880|SCY1-like 3 (S. cerevisiae)	NM_028776|Scyl3|240880|SCY1-like 3 (S. cerevisiae)	BC066800|Scyl3|240880|SCY1-like 3 (S. cerevisiae)
mm9_v1_chr8_+_90723069_90723153	0.311405	EOMES.p2	AK077553|Papd5|214627|PAP associated domain containing 5	NM_001164497|Papd5|214627|PAP associated domain containing 5	NM_001164498|Papd5|214627|PAP associated domain containing 5	NM_001164499|Papd5|214627|PAP associated domain containing 5	BC059053|Papd5|214627|PAP associated domain containing 5	BC144796|Papd5|214627|PAP associated domain containing 5	BC144797|Papd5|214627|PAP associated domain containing 5	BC145737|Papd5|214627|PAP associated domain containing 5
mm9_v1_chr4_+_33069972_33070146	0.310494	EOMES.p2	NM_027491|Rragd|52187|Ras-related GTP binding D	AF490406|Rragd|52187|Ras-related GTP binding D
mm9_v1_chrX_+_63906333_63906333	0.310341	EOMES.p2	BC111888|Slitrk2|245450|SLIT and NTRK-like family, member 2	BC112406|Slitrk2|245450|SLIT and NTRK-like family, member 2	NM_198863|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr9_-_78328343_78328496	0.310271	EOMES.p2	AK200818|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK194234|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	BC092292|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	BC004005|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	X03688|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	BC003969|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	BC004067|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	BC005660|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	BC092276|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	X13661|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1
mm9_v1_chr10_+_73284612_73284690	0.310008	EOMES.p2	NM_001142735|Pcdh15|11994|protocadherin 15	NM_001142736|Pcdh15|11994|protocadherin 15	NM_001142737|Pcdh15|11994|protocadherin 15	NM_001142738|Pcdh15|11994|protocadherin 15	NM_001142739|Pcdh15|11994|protocadherin 15	NM_001142740|Pcdh15|11994|protocadherin 15	NM_001142741|Pcdh15|11994|protocadherin 15	NM_001142742|Pcdh15|11994|protocadherin 15	NM_001142743|Pcdh15|11994|protocadherin 15	NM_001142746|Pcdh15|11994|protocadherin 15	NM_001142747|Pcdh15|11994|protocadherin 15	NM_001142748|Pcdh15|11994|protocadherin 15	NM_001142760|Pcdh15|11994|protocadherin 15	NM_023115|Pcdh15|11994|protocadherin 15	AF281899|Pcdh15|11994|protocadherin 15	AY949849|Pcdh15|11994|protocadherin 15	DQ354396|Pcdh15|11994|protocadherin 15	DQ354397|Pcdh15|11994|protocadherin 15	DQ354398|Pcdh15|11994|protocadherin 15	DQ354399|Pcdh15|11994|protocadherin 15	DQ354400|Pcdh15|11994|protocadherin 15	DQ354401|Pcdh15|11994|protocadherin 15	DQ354402|Pcdh15|11994|protocadherin 15	DQ354403|Pcdh15|11994|protocadherin 15	DQ354404|Pcdh15|11994|protocadherin 15	DQ354405|Pcdh15|11994|protocadherin 15	DQ354406|Pcdh15|11994|protocadherin 15	DQ354407|Pcdh15|11994|protocadherin 15	DQ354408|Pcdh15|11994|protocadherin 15	DQ354409|Pcdh15|11994|protocadherin 15	DQ354410|Pcdh15|11994|protocadherin 15	DQ354411|Pcdh15|11994|protocadherin 15	DQ354412|Pcdh15|11994|protocadherin 15	DQ354413|Pcdh15|11994|protocadherin 15	DQ354414|Pcdh15|11994|protocadherin 15	DQ354415|Pcdh15|11994|protocadherin 15	AK139154|Pcdh15|11994|protocadherin 15	DQ354416|Pcdh15|11994|protocadherin 15	DQ354417|Pcdh15|11994|protocadherin 15	DQ354418|Pcdh15|11994|protocadherin 15
mm9_v1_chrX_+_70587906_70588053	0.310001	EOMES.p2	NM_031494|Zfp275|27081|zinc finger protein 275	AK142957|Zfp275|27081|zinc finger protein 275	NM_001160229|Zfp275|27081|zinc finger protein 275	BC138002|Zfp275|27081|zinc finger protein 275	BC138003|Zfp275|27081|zinc finger protein 275
mm9_v1_chr11_-_100957861_100957957	0.309438	EOMES.p2	
mm9_v1_chr3_-_108229641_108229684	0.309284	EOMES.p2	
mm9_v1_chr11_-_120412426_120412447	0.308549	EOMES.p2	BC115957|Dysfip1|68701|dysferlin interacting protein 1	AK004064|Dysfip1|68701|dysferlin interacting protein 1	NM_026814|Dysfip1|68701|dysferlin interacting protein 1
mm9_v1_chr12_+_66137309_66137322	0.308192	EOMES.p2	AK154170|Prpf39|328110|PRP39 pre-mRNA processing factor 39 homolog (yeast)	NM_177806|Prpf39|328110|PRP39 pre-mRNA processing factor 39 homolog (yeast)
mm9_v1_chrX_+_75110096_75110096	0.306766	EOMES.p2	NM_001085544|Gm14744|628923|predicted gene 14744
mm9_v1_chrX_+_8610611_8610618	0.305265	EOMES.p2	NM_031261|Fthl17|83457|ferritin, heavy polypeptide-like 17	AF285569|Fthl17|83457|ferritin, heavy polypeptide-like 17
mm9_v1_chrX_+_75233629_75233629	0.304453	EOMES.p2	AK017258|5430402E10Rik|71351|RIKEN cDNA 5430402E10 gene	NM_027768|5430402E10Rik|71351|RIKEN cDNA 5430402E10 gene
mm9_v1_chr11_+_78317000_78317014	0.304166	EOMES.p2	AK139838|Sebox|18292|SEBOX homeobox	AK143429|Sebox|18292|SEBOX homeobox	BC098184|Sebox|18292|SEBOX homeobox	NM_008759|Sebox|18292|SEBOX homeobox
mm9_v1_chr11_-_95973271_95973275	0.304067	EOMES.p2	AK166939|Calcoco2|76815|calcium binding and coiled-coil domain 2	AF490344|Calcoco2|76815|calcium binding and coiled-coil domain 2	AK010816|Calcoco2|76815|calcium binding and coiled-coil domain 2	AK145542|Calcoco2|76815|calcium binding and coiled-coil domain 2	AK166710|Calcoco2|76815|calcium binding and coiled-coil domain 2	AK166756|Calcoco2|76815|calcium binding and coiled-coil domain 2	AK167009|Calcoco2|76815|calcium binding and coiled-coil domain 2	AK167172|Calcoco2|76815|calcium binding and coiled-coil domain 2	AK167291|Calcoco2|76815|calcium binding and coiled-coil domain 2	NM_001100177|Calcoco2|76815|calcium binding and coiled-coil domain 2	NM_029755|Calcoco2|76815|calcium binding and coiled-coil domain 2
mm9_v1_chr7_-_6683113_6683136	0.302386	EOMES.p2	BC085183|Peg3|18616|paternally expressed 3	BC072661|Peg3|18616|paternally expressed 3	AB003040|Peg3|18616|paternally expressed 3	AK044602|Peg3|18616|paternally expressed 3	AK053523|Peg3|18616|paternally expressed 3	AK141217|Peg3|18616|paternally expressed 3	NM_008817|Peg3|18616|paternally expressed 3	AK163845|Peg3|18616|paternally expressed 3
mm9_v1_chr4_+_134483092_134483164	0.301965	EOMES.p2	
mm9_v1_chr8_+_90806890_90806890	0.300599	EOMES.p2	AK155646|Adcy7|11513|adenylate cyclase 7	NM_001109756|Adcy7|11513|adenylate cyclase 7
mm9_v1_chr5_-_138125903_138125907	0.300364	EOMES.p2	AK155221|Agfg2|231801|ArfGAP with FG repeats 2
mm9_v1_chr18_+_23468655_23468725	0.299813	EOMES.p2	X95227|Dtna|13527|dystrobrevin alpha
mm9_v1_chr8_+_109394141_109394246	0.299465	EOMES.p2	NM_008217|Has3|15118|hyaluronan synthase 3	U86408|Has3|15118|hyaluronan synthase 3	BC138152|Has3|15118|hyaluronan synthase 3	BC138161|Has3|15118|hyaluronan synthase 3
mm9_v1_chr9_+_122076647_122076688	0.297609	EOMES.p2	
mm9_v1_chr17_+_35704429_35704481	0.296348	EOMES.p2	AK037046|2300002M23Rik|69542|RIKEN cDNA 2300002M23 gene	BC107265|2300002M23Rik|69542|RIKEN cDNA 2300002M23 gene	BC107266|2300002M23Rik|69542|RIKEN cDNA 2300002M23 gene	NM_175148|2300002M23Rik|69542|RIKEN cDNA 2300002M23 gene	AK009013|2300002M23Rik|69542|RIKEN cDNA 2300002M23 gene
mm9_v1_chr5_-_136450345_136450345	0.294066	EOMES.p2	NM_001160366|Srcrb4d|109267|scavenger receptor cysteine rich domain containing, group B (4 domains)
mm9_v1_chr8_+_23734514_23734514	0.293802	EOMES.p2	BC018400|Dkk4|234130|dickkopf homolog 4 (Xenopus laevis)	NM_145592|Dkk4|234130|dickkopf homolog 4 (Xenopus laevis)
mm9_v1_chr17_+_25960571_25960660	0.291421	EOMES.p2	NM_173741|Wdr24|268933|WD repeat domain 24	AK078694|Wdr24|268933|WD repeat domain 24	AK170253|Wdr24|268933|WD repeat domain 24	BC037651|Wdr24|268933|WD repeat domain 24
mm9_v1_chr14_-_45479028_45479049	0.291248	EOMES.p2	BC132297|Ptgdr|19214|prostaglandin D receptor	AK032488|Ptgdr|19214|prostaglandin D receptor	NM_008962|Ptgdr|19214|prostaglandin D receptor
mm9_v1_chrX_+_150158113_150158178	0.291143	EOMES.p2	AK008724|2210013O21Rik|70123|RIKEN cDNA 2210013O21 gene
mm9_v1_chr18_+_37925619_37925770	0.289804	EOMES.p2	BC054528|Pcdhga12|93724|protocadherin gamma subfamily A, 12	U88550|Pcdhga12|93724|protocadherin gamma subfamily A, 12	AY013795|Pcdhga12|93724|protocadherin gamma subfamily A, 12
mm9_v1_chr13_-_97440734_97440890	0.289758	EOMES.p2	AK159899|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	BC085083|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	AK048784|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	NM_008255|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase
mm9_v1_chr3_-_57651621_57651757	0.289464	EOMES.p2	NM_019410|Pfn2|18645|profilin 2
mm9_v1_chr6_+_86578167_86578196	0.28572	EOMES.p2	DQ841260|Asprv1|67855|aspartic peptidase, retroviral-like 1	NM_026414|Asprv1|67855|aspartic peptidase, retroviral-like 1	BC057938|Asprv1|67855|aspartic peptidase, retroviral-like 1
mm9_v1_chr8_+_124474475_124474479	0.284645	EOMES.p2	AK170884|Banp|53325|BTG3 associated nuclear protein	AF091234|Banp|53325|BTG3 associated nuclear protein	AF235503|Banp|53325|BTG3 associated nuclear protein
mm9_v1_chr3_-_115832327_115832378	0.284258	EOMES.p2	U12884|Vcam1|22329|vascular cell adhesion molecule 1	M84487|Vcam1|22329|vascular cell adhesion molecule 1	L08431|Vcam1|22329|vascular cell adhesion molecule 1	BC011159|Vcam1|22329|vascular cell adhesion molecule 1	AK016465|Vcam1|22329|vascular cell adhesion molecule 1	AK030195|Vcam1|22329|vascular cell adhesion molecule 1	AK143401|Vcam1|22329|vascular cell adhesion molecule 1	AK162954|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chr7_-_149843316_149843387	0.283466	EOMES.p2	M14951|Igf2|16002|insulin-like growth factor 2	BC058615|Igf2|16002|insulin-like growth factor 2	BC053489|Igf2|16002|insulin-like growth factor 2	NM_001122737|Igf2|16002|insulin-like growth factor 2
mm9_v1_chr7_-_134565529_134565578	0.282171	EOMES.p2	AK013037|Zfp688|69234|zinc finger protein 688	BC027683|Zfp688|69234|zinc finger protein 688	NM_026999|Zfp688|69234|zinc finger protein 688	AK170857|Zfp688|69234|zinc finger protein 688
mm9_v1_chr12_-_76277663_76277757	0.279833	EOMES.p2	BC066138|Kcnh5|238271|potassium voltage-gated channel, subfamily H (eag-related), member 5
mm9_v1_chr7_-_3796651_3796654	0.277067	EOMES.p2	AK140776|Pira2|18725|paired-Ig-like receptor A2	AK137475|Pira2|18725|paired-Ig-like receptor A2	AK172046|Pira2|18725|paired-Ig-like receptor A2	NM_011089|Pira2|18725|paired-Ig-like receptor A2
mm9_v1_chrX_+_97925185_97925339	0.275112	EOMES.p2	NM_023608|Gdpd2|71584|glycerophosphodiester phosphodiesterase domain containing 2	AK031379|Gdpd2|71584|glycerophosphodiester phosphodiesterase domain containing 2	BC038274|Gdpd2|71584|glycerophosphodiester phosphodiesterase domain containing 2	AB048364|Gdpd2|71584|glycerophosphodiester phosphodiesterase domain containing 2
mm9_v1_chr1_-_88567078_88567149	0.273658	EOMES.p2	BC111834|Nppc|18159|natriuretic peptide type C	AK036176|Nppc|18159|natriuretic peptide type C	NM_010933|Nppc|18159|natriuretic peptide type C	AK020093|Nppc|18159|natriuretic peptide type C
mm9_v1_chr9_+_72859850_72859978	0.273418	EOMES.p2	BC006717|Ccpg1|72278|cell cycle progression 1
mm9_v1_chr9_-_37538645_37538688	0.271869	EOMES.p2	BC138117|Olfr151|406176|olfactory receptor 151	BC138118|Olfr151|406176|olfactory receptor 151	NM_207664|Olfr151|406176|olfactory receptor 151	AY245537|Olfr151|406176|olfactory receptor 151
mm9_v1_chr7_-_149865451_149865614	0.270617	EOMES.p2	BC145554|Ins2|16334|insulin II	BC132650|Ins2|16334|insulin II	BC132652|Ins2|16334|insulin II	Z47785|Ins2|16334|insulin II	AY899305|Ins2|16334|insulin II	BC066208|Ins2|16334|insulin II	BC099934|Ins2|16334|insulin II	AK007612|Ins2|16334|insulin II	GQ915612|Ins2|16334|insulin II	NM_001185083|Ins2|16334|insulin II	NM_001185084|Ins2|16334|insulin II	NM_008387|Ins2|16334|insulin II
mm9_v1_chr15_-_98051384_98051486	0.270071	EOMES.p2	AK039376|Olfr287|634104|olfactory receptor 287	NM_001011780|Olfr287|634104|olfactory receptor 287
mm9_v1_chr13_-_70980619_70980688	0.269982	EOMES.p2	AK173338|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	AK031314|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	AK134523|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	NM_172053|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	BC034739|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16
mm9_v1_chr12_+_8797502_8797628	0.268933	EOMES.p2	
mm9_v1_chr7_-_14708338_14708398	0.268716	EOMES.p2	NM_001101586|Sult2a3|629203|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 3
mm9_v1_chr11_-_99949426_99949428	0.267626	EOMES.p2	BC118064|Krt32|16670|keratin 32	BC117553|Krt32|16670|keratin 32	NM_001159374|Krt32|16670|keratin 32	X75649|Krt32|16670|keratin 32
mm9_v1_chrX_-_99383709_99383709	0.266844	EOMES.p2	BC106152|Rps4x|20102|ribosomal protein S4, X-linked	M73436|Rps4x|20102|ribosomal protein S4, X-linked	NM_009094|Rps4x|20102|ribosomal protein S4, X-linked
mm9_v1_chr10_+_127848671_127848731	0.265842	EOMES.p2	AK045760|Rnf41|67588|ring finger protein 41	NM_001164237|Rnf41|67588|ring finger protein 41	NM_026259|Rnf41|67588|ring finger protein 41	AK030558|Rnf41|67588|ring finger protein 41	BC049078|Rnf41|67588|ring finger protein 41	AF305730|Rnf41|67588|ring finger protein 41
mm9_v1_chr2_+_143858837_143858837	0.263277	EOMES.p2	AK076863|Banf2|403171|barrier to autointegration factor 2	BC049628|Banf2|403171|barrier to autointegration factor 2	NM_001044750|Banf2|403171|barrier to autointegration factor 2	NM_207275|Banf2|403171|barrier to autointegration factor 2
mm9_v1_chr12_+_66137328_66137352	0.262875	EOMES.p2	AK168462|Prpf39|328110|PRP39 pre-mRNA processing factor 39 homolog (yeast)	BC034078|Prpf39|328110|PRP39 pre-mRNA processing factor 39 homolog (yeast)
mm9_v1_chr16_-_89488129_89488198	0.262637	EOMES.p2	D86423|Krtap8-1|16703|keratin associated protein 8-1	AK133727|Krtap8-1|16703|keratin associated protein 8-1	NM_010675|Krtap8-1|16703|keratin associated protein 8-1
mm9_v1_chr13_-_101603189_101603199	0.26221	EOMES.p2	AK166006|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5
mm9_v1_chr6_+_140571183_140571183	0.262089	EOMES.p2	AK029011|Aebp2|11569|AE binding protein 2	NM_178803|Aebp2|11569|AE binding protein 2
mm9_v1_chr6_+_57063418_57063418	0.262007	EOMES.p2	NM_053231|Vmn1r10|113858|vomeronasal 1 receptor 10
mm9_v1_chr7_-_138473006_138473012	0.261721	EOMES.p2	AK005730|1700007K09Rik|69318|RIKEN cDNA 1700007K09 gene	BC048596|1700007K09Rik|69318|RIKEN cDNA 1700007K09 gene	NM_027037|1700007K09Rik|69318|RIKEN cDNA 1700007K09 gene
mm9_v1_chr10_-_24919916_24919967	0.259887	EOMES.p2	AK086696|Akap7|432442|A kinase (PRKA) anchor protein 7	AK085630|Akap7|432442|A kinase (PRKA) anchor protein 7	AK139238|Akap7|432442|A kinase (PRKA) anchor protein 7
mm9_v1_chr16_+_43640198_43640217	0.25899	EOMES.p2	AK080813|Zbtb20|56490|zinc finger and BTB domain containing 20
mm9_v1_chr9_-_58049842_58049944	0.258931	EOMES.p2	EU497918|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	BC059068|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2
mm9_v1_chr17_-_45705198_45705339	0.258805	EOMES.p2	AK192311|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chr16_+_94914273_94914275	0.257611	EOMES.p2	AK165966|Dyrk1a|13548|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	AK163136|Dyrk1a|13548|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
mm9_v1_chr5_-_125342474_125342590	0.256077	EOMES.p2	BC021492|Ccdc92|215707|coiled-coil domain containing 92	AK028192|Ccdc92|215707|coiled-coil domain containing 92	AK165371|Ccdc92|215707|coiled-coil domain containing 92	NM_144819|Ccdc92|215707|coiled-coil domain containing 92
mm9_v1_chrX_-_159267249_159267385	0.255241	EOMES.p2	AK162263|Txlng|353170|taxilin gamma	BC080778|Txlng|353170|taxilin gamma	AK161561|Txlng|353170|taxilin gamma	AK031783|Txlng|353170|taxilin gamma	BC059099|Txlng|353170|taxilin gamma	BC117898|Txlng|353170|taxilin gamma	BC117899|Txlng|353170|taxilin gamma	AK030100|Txlng|353170|taxilin gamma	NM_178935|Txlng|353170|taxilin gamma	AK078477|Txlng|353170|taxilin gamma	AK044130|Txlng|353170|taxilin gamma	DQ316984|Txlng|353170|taxilin gamma	DQ320011|Txlng|353170|taxilin gamma
mm9_v1_chr7_-_16457733_16457733	0.253817	EOMES.p2	AK139691|Crx|12951|cone-rod homeobox containing gene	NM_001113330|Crx|12951|cone-rod homeobox containing gene
mm9_v1_chr7_+_30954893_30954940	0.25372	EOMES.p2	AK046598|Gm5113|330503|predicted gene 5113	AK147880|Gm5113|330503|predicted gene 5113	NM_001033540|Gm5113|330503|predicted gene 5113
mm9_v1_chr19_-_41818345_41818345	0.253093	EOMES.p2	NM_015748|Slit1|20562|slit homolog 1 (Drosophila)
mm9_v1_chr7_+_25862223_25862340	0.252922	EOMES.p2	AK143997|Zfp574|232976|zinc finger protein 574	NM_001168506|Zfp574|232976|zinc finger protein 574	NM_175477|Zfp574|232976|zinc finger protein 574	AK053744|Zfp574|232976|zinc finger protein 574	BC059044|Zfp574|232976|zinc finger protein 574	AK042074|Zfp574|232976|zinc finger protein 574	AK170243|Zfp574|232976|zinc finger protein 574	BC021833|Zfp574|232976|zinc finger protein 574	BC094354|Zfp574|232976|zinc finger protein 574
mm9_v1_chr2_+_154374639_154374777	0.251751	EOMES.p2	AK005633|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	DQ080431|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	NM_029305|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	BC147532|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	BC147533|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	BC039797|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene
mm9_v1_chr7_+_15974199_15974319	0.25115	EOMES.p2	NM_145708|Obox2|246792|oocyte specific homeobox 2	BC094912|Obox2|246792|oocyte specific homeobox 2
mm9_v1_chr6_-_99385338_99385338	0.249911	EOMES.p2	NM_053202|Foxp1|108655|forkhead box P1
mm9_v1_chr11_+_58791594_58791614	0.249356	EOMES.p2	AK040618|Trim11|94091|tripartite motif-containing 11	AK170855|Trim11|94091|tripartite motif-containing 11	AK157332|Trim11|94091|tripartite motif-containing 11	AK139477|Trim11|94091|tripartite motif-containing 11
mm9_v1_chr3_+_145421870_145422044	0.249288	EOMES.p2	AK149185|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1
mm9_v1_chr6_-_124688630_124688780	0.247929	EOMES.p2	AK150509|Ptpn6|15170|protein tyrosine phosphatase, non-receptor type 6	AK132509|Ptpn6|15170|protein tyrosine phosphatase, non-receptor type 6	NM_001077705|Ptpn6|15170|protein tyrosine phosphatase, non-receptor type 6
mm9_v1_chrX_+_91881407_91881417	0.246267	EOMES.p2	NM_008179|Gspt2|14853|G1 to S phase transition 2	AK050859|Gspt2|14853|G1 to S phase transition 2	AK019241|Gspt2|14853|G1 to S phase transition 2
mm9_v1_chr3_-_92819586_92819610	0.244881	EOMES.p2	BC060280|Crct1|74175|cysteine-rich C-terminal 1	AK009010|Crct1|74175|cysteine-rich C-terminal 1	NM_028798|Crct1|74175|cysteine-rich C-terminal 1
mm9_v1_chr5_-_52541869_52541943	0.244299	EOMES.p2	AK208682|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15
mm9_v1_chr1_+_169528838_169528848	0.24246	EOMES.p2	M84819|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr3_+_87180308_87180388	0.242171	EOMES.p2	AK041750|Fcrl1|229499|Fc receptor-like 1	NM_001136236|Fcrl1|229499|Fc receptor-like 1	NM_153090|Fcrl1|229499|Fc receptor-like 1	NM_178165|Fcrl1|229499|Fc receptor-like 1	AK038494|Fcrl1|229499|Fc receptor-like 1	AK156528|Fcrl1|229499|Fc receptor-like 1	AK156985|Fcrl1|229499|Fc receptor-like 1	AY506554|Fcrl1|229499|Fc receptor-like 1	AY506555|Fcrl1|229499|Fc receptor-like 1	AF329485|Fcrl1|229499|Fc receptor-like 1	BC055830|Fcrl1|229499|Fc receptor-like 1	AY158088|Fcrl1|229499|Fc receptor-like 1	AY158089|Fcrl1|229499|Fc receptor-like 1
mm9_v1_chr4_+_53792576_53792606	0.240049	EOMES.p2	AK018448|Tal2|21350|T-cell acute lymphocytic leukemia 2	NM_009317|Tal2|21350|T-cell acute lymphocytic leukemia 2	BC110625|Tal2|21350|T-cell acute lymphocytic leukemia 2
mm9_v1_chr16_-_88751872_88751894	0.238652	EOMES.p2	AF031485|Krtap13|16699|keratin associated protein 13	NM_010671|Krtap13|16699|keratin associated protein 13	BC063754|Krtap13|16699|keratin associated protein 13	AK003960|Krtap13|16699|keratin associated protein 13
mm9_v1_chr3_+_98026078_98026095	0.237959	EOMES.p2	AK008049|Reg4|67709|regenerating islet-derived family, member 4	AK008438|Reg4|67709|regenerating islet-derived family, member 4	AK162316|Reg4|67709|regenerating islet-derived family, member 4	NM_026328|Reg4|67709|regenerating islet-derived family, member 4	AK160329|Reg4|67709|regenerating islet-derived family, member 4	BC019465|Reg4|67709|regenerating islet-derived family, member 4
mm9_v1_chr4_+_143947866_143947866	0.236245	EOMES.p2	BC100406|Gm13119|433779|predicted gene 13119	NM_001034101|Gm13119|433779|predicted gene 13119
mm9_v1_chr2_+_127250916_127250939	0.235118	EOMES.p2	AB259571|Gpat2|215456|glycerol-3-phosphate acyltransferase 2, mitochondrial	AK131154|Gpat2|215456|glycerol-3-phosphate acyltransferase 2, mitochondrial	NM_001081089|Gpat2|215456|glycerol-3-phosphate acyltransferase 2, mitochondrial	BC113165|Gpat2|215456|glycerol-3-phosphate acyltransferase 2, mitochondrial	BC113776|Gpat2|215456|glycerol-3-phosphate acyltransferase 2, mitochondrial
mm9_v1_chr16_-_17722915_17723043	0.234481	EOMES.p2	AF328770|Med15|94112|mediator complex subunit 15	AK131186|Med15|94112|mediator complex subunit 15	AK171628|Med15|94112|mediator complex subunit 15	BC054779|Med15|94112|mediator complex subunit 15	AK166522|Med15|94112|mediator complex subunit 15	AK038915|Med15|94112|mediator complex subunit 15	AK052231|Med15|94112|mediator complex subunit 15	AK142224|Med15|94112|mediator complex subunit 15	NM_001040683|Med15|94112|mediator complex subunit 15	NM_033609|Med15|94112|mediator complex subunit 15	AK169904|Med15|94112|mediator complex subunit 15
mm9_v1_chr14_-_59797556_59797585	0.233936	EOMES.p2	BC099536|Gm5142|380907|predicted gene 5142	AK076969|Gm5142|380907|predicted gene 5142	NM_001004158|Gm5142|380907|predicted gene 5142
mm9_v1_chr7_-_134563059_134563065	0.233248	EOMES.p2	BC038680|Zfp688|69234|zinc finger protein 688
mm9_v1_chr14_+_49791899_49792002	0.232983	EOMES.p2	NM_001081430|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	AK015640|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC157931|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC158065|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC172029|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit
mm9_v1_chr14_-_122097583_122097657	0.232437	EOMES.p2	BC157964|Dock9|105445|dedicator of cytokinesis 9	NM_001081039|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr15_+_12754582_12754660	0.232051	EOMES.p2	AK144147|Drosha|14000|drosha, ribonuclease type III	BC088999|Drosha|14000|drosha, ribonuclease type III	AK148640|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr10_-_61842599_61842655	0.231622	EOMES.p2	EU430531|Hk1|15275|hexokinase 1	EU430532|Hk1|15275|hexokinase 1	EU430533|Hk1|15275|hexokinase 1	L16949|Hk1|15275|hexokinase 1	NM_010438|Hk1|15275|hexokinase 1
mm9_v1_chr17_+_18561067_18561067	0.231545	EOMES.p2	NM_001102581|Vmn2r95|328759|vomeronasal 2, receptor 95
mm9_v1_chr14_-_51536045_51536047	0.230475	EOMES.p2	AK207563|Osgep|66246|O-sialoglycoprotein endopeptidase
mm9_v1_chr7_-_135034440_135034483	0.230071	EOMES.p2	AK220244|Prss53|330657|protease, serine, 53	BC147509|Prss53|330657|protease, serine, 53	BC151010|Prss53|330657|protease, serine, 53	BC151017|Prss53|330657|protease, serine, 53	BC172059|Prss53|330657|protease, serine, 53	NM_001081268|Prss53|330657|protease, serine, 53
mm9_v1_chr14_+_34402392_34402458	0.22929	EOMES.p2	AK017003|Ptpn20|19256|protein tyrosine phosphatase, non-receptor type 20	NM_008978|Ptpn20|19256|protein tyrosine phosphatase, non-receptor type 20	AK029493|Ptpn20|19256|protein tyrosine phosphatase, non-receptor type 20
mm9_v1_chr2_+_129949020_129949033	0.227192	EOMES.p2	AK037229|Tgm6|241636|transglutaminase 6	AY159126|Tgm6|241636|transglutaminase 6	AY177606|Tgm6|241636|transglutaminase 6	NM_177726|Tgm6|241636|transglutaminase 6	BC112420|Tgm6|241636|transglutaminase 6	BC113796|Tgm6|241636|transglutaminase 6
mm9_v1_chr4_-_144681825_144681852	0.226845	EOMES.p2	BC037490|Vps13d|230895|vacuolar protein sorting 13 D (yeast)
mm9_v1_chr16_+_88829238_88829254	0.226071	EOMES.p2	AK132534|Krtap15|26560|keratin associated protein 15	NM_013713|Krtap15|26560|keratin associated protein 15	BC116219|Krtap15|26560|keratin associated protein 15
mm9_v1_chr3_+_63885563_63885563	0.224404	EOMES.p2	AB267725|Vmn2r1|56544|vomeronasal 2, receptor 1	AF053986|Vmn2r1|56544|vomeronasal 2, receptor 1	NM_019918|Vmn2r1|56544|vomeronasal 2, receptor 1
mm9_v1_chr9_+_4383536_4383536	0.221167	EOMES.p2	AK180204|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene	BC014729|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene	NM_145609|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene
mm9_v1_chr5_+_13399301_13399308	0.220332	EOMES.p2	D85028|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	NM_009152|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm9_v1_chrX_+_72341385_72341435	0.219313	EOMES.p2	AK136418|Dkc1|245474|dyskeratosis congenita 1, dyskerin homolog (human)	AK144139|Dkc1|245474|dyskeratosis congenita 1, dyskerin homolog (human)	AK166105|Dkc1|245474|dyskeratosis congenita 1, dyskerin homolog (human)
mm9_v1_chr14_+_26484518_26484659	0.219246	EOMES.p2	AK132106|Gm10397|100038401|predicted gene 10397
mm9_v1_chr2_-_26771849_26771889	0.21863	EOMES.p2	AK002469|Surf1|20930|surfeit gene 1	AK154726|Surf1|20930|surfeit gene 1
mm9_v1_chr9_+_89094190_89094197	0.218159	EOMES.p2	CT010250|Bcl2a1a|12044|B-cell leukemia/lymphoma 2 related protein A1a
mm9_v1_chr11_-_23670766_23670992	0.21759	EOMES.p2	AK031627|Rel|19696|reticuloendotheliosis oncogene	BC139447|Rel|19696|reticuloendotheliosis oncogene	BC139448|Rel|19696|reticuloendotheliosis oncogene	BC139770|Rel|19696|reticuloendotheliosis oncogene	NM_009044|Rel|19696|reticuloendotheliosis oncogene	X60271|Rel|19696|reticuloendotheliosis oncogene
mm9_v1_chr6_+_86578269_86578294	0.217567	EOMES.p2	BC108357|Asprv1|67855|aspartic peptidase, retroviral-like 1
mm9_v1_chr5_+_143178045_143178121	0.217466	EOMES.p2	NM_146257|Slc29a4|243328|solute carrier family 29 (nucleoside transporters), member 4	BC025599|Slc29a4|243328|solute carrier family 29 (nucleoside transporters), member 4
mm9_v1_chr13_-_76194247_76194443	0.216617	EOMES.p2	AY255541|Gpr150|238725|G protein-coupled receptor 150	BC118612|Gpr150|238725|G protein-coupled receptor 150	BC118614|Gpr150|238725|G protein-coupled receptor 150	AK047609|Gpr150|238725|G protein-coupled receptor 150	NM_175495|Gpr150|238725|G protein-coupled receptor 150
mm9_v1_chr3_-_92261456_92261538	0.215463	EOMES.p2	NM_011478|Sprr3|20766|small proline-rich protein 3	BC125629|Sprr3|20766|small proline-rich protein 3
mm9_v1_chr4_-_63156984_63157036	0.213988	EOMES.p2	AY739114|Whrn|73750|whirlin	AY739115|Whrn|73750|whirlin	AY739116|Whrn|73750|whirlin	AY739117|Whrn|73750|whirlin	AY739118|Whrn|73750|whirlin	AY739119|Whrn|73750|whirlin	AY739120|Whrn|73750|whirlin	NM_001008791|Whrn|73750|whirlin	NM_001008792|Whrn|73750|whirlin	NM_001008793|Whrn|73750|whirlin	NM_001008794|Whrn|73750|whirlin	NM_001008795|Whrn|73750|whirlin	NM_001008796|Whrn|73750|whirlin	NM_028640|Whrn|73750|whirlin	AK157955|Whrn|73750|whirlin
mm9_v1_chr14_-_8826504_8826661	0.213684	EOMES.p2	U76110|Dnase1l3|13421|deoxyribonuclease 1-like 3	AK156109|Dnase1l3|13421|deoxyribonuclease 1-like 3	AK171843|Dnase1l3|13421|deoxyribonuclease 1-like 3	BC012671|Dnase1l3|13421|deoxyribonuclease 1-like 3	AF047355|Dnase1l3|13421|deoxyribonuclease 1-like 3
mm9_v1_chr17_+_34727032_34727160	0.212775	EOMES.p2	AK155863|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	BC021942|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)
mm9_v1_chr7_+_49371840_49371840	0.211913	EOMES.p2	NM_001105057|Vmn2r60|637898|vomeronasal 2, receptor 60
mm9_v1_chr10_+_87553816_87553819	0.211159	EOMES.p2	AK138363|Pmch|110312|pro-melanin-concentrating hormone	BC048534|Pmch|110312|pro-melanin-concentrating hormone	NM_029971|Pmch|110312|pro-melanin-concentrating hormone	AK020723|Pmch|110312|pro-melanin-concentrating hormone
mm9_v1_chr7_-_4474044_4474047	0.21032	EOMES.p2	AK169223|Tnni3|21954|troponin I, cardiac 3	BC061171|Tnni3|21954|troponin I, cardiac 3	NM_009406|Tnni3|21954|troponin I, cardiac 3
mm9_v1_chr11_+_74739357_74739420	0.209572	EOMES.p2	BC047279|Smg6|103677|Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	BC066040|Smg6|103677|Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_001002764|Smg6|103677|Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	BC077715|Smg6|103677|Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	BC016550|Smg6|103677|Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr2_-_102241053_102241195	0.208792	EOMES.p2	AJ278191|Trim44|80985|tripartite motif-containing 44	NM_020267|Trim44|80985|tripartite motif-containing 44
mm9_v1_chr14_-_71041964_71042074	0.208473	EOMES.p2	AK082858|Fgf17|14171|fibroblast growth factor 17	BC119033|Fgf17|14171|fibroblast growth factor 17	BC144776|Fgf17|14171|fibroblast growth factor 17	AK077555|Fgf17|14171|fibroblast growth factor 17	NM_008004|Fgf17|14171|fibroblast growth factor 17
mm9_v1_chr16_-_44139087_44139164	0.207297	EOMES.p2	AK140873|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	BC038392|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK150742|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK166857|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK149833|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK153403|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK154869|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK160792|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK170721|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	NM_007508|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A
mm9_v1_chr1_+_133495690_133495690	0.207199	EOMES.p2	NM_011924|Avpr1b|26361|arginine vasopressin receptor 1B
mm9_v1_chrX_-_97790207_97790207	0.206493	EOMES.p2	AK076364|P2ry4|57385|pyrimidinergic receptor P2Y, G-protein coupled, 4	NM_020621|P2ry4|57385|pyrimidinergic receptor P2Y, G-protein coupled, 4
mm9_v1_chr2_+_148645816_148645857	0.206043	EOMES.p2	AY600990|Cst13|69294|cystatin 13	BC048681|Cst13|69294|cystatin 13	NM_027024|Cst13|69294|cystatin 13	AK005665|Cst13|69294|cystatin 13
mm9_v1_chr12_+_35669432_35669444	0.205625	EOMES.p2	AK077203|Prps1l1|75456|phosphoribosyl pyrophosphate synthetase 1-like 1	NM_029294|Prps1l1|75456|phosphoribosyl pyrophosphate synthetase 1-like 1	BC109355|Prps1l1|75456|phosphoribosyl pyrophosphate synthetase 1-like 1
mm9_v1_chr14_+_45839391_45839393	0.202464	EOMES.p2	AK082691|Gpr137c|70713|G protein-coupled receptor 137C	NM_027518|Gpr137c|70713|G protein-coupled receptor 137C	AK018183|Gpr137c|70713|G protein-coupled receptor 137C
mm9_v1_chr5_-_109435454_109435489	0.202424	EOMES.p2	NM_009491|Vmn2r10|22307|vomeronasal 2, receptor 10	AF011426|Vmn2r10|22307|vomeronasal 2, receptor 10
mm9_v1_chr8_-_3625510_3625544	0.201343	EOMES.p2	BC014694|Pcp2|18545|Purkinje cell protein 2 (L7)	BC028982|Pcp2|18545|Purkinje cell protein 2 (L7)	BC024853|Pcp2|18545|Purkinje cell protein 2 (L7)	EU164759|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_001129803|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chr11_+_73502279_73502349	0.199809	EOMES.p2	AK145370|Zfp735|76390|zinc finger protein 735	NM_001126489|Zfp735|76390|zinc finger protein 735	BC137974|Zfp735|76390|zinc finger protein 735
mm9_v1_chr11_-_68770359_68770398	0.199232	EOMES.p2	BC089365|Arhgef15|442801|Rho guanine nucleotide exchange factor (GEF) 15	NM_177566|Arhgef15|442801|Rho guanine nucleotide exchange factor (GEF) 15
mm9_v1_chr4_+_129526991_129527050	0.19898	EOMES.p2	
mm9_v1_chr11_-_29073541_29073557	0.197537	EOMES.p2	AK042012|A630052C17Rik|320757|RIKEN cDNA A630052C17 gene
mm9_v1_chr10_+_75052084_75052401	0.197148	EOMES.p2	AK140308|Ggt5|23887|gamma-glutamyltransferase 5	AK049084|Ggt5|23887|gamma-glutamyltransferase 5	AK052183|Ggt5|23887|gamma-glutamyltransferase 5	BC089585|Ggt5|23887|gamma-glutamyltransferase 5	NM_011820|Ggt5|23887|gamma-glutamyltransferase 5	AK085788|Ggt5|23887|gamma-glutamyltransferase 5	AF077765|Ggt5|23887|gamma-glutamyltransferase 5	AK170326|Ggt5|23887|gamma-glutamyltransferase 5	BC051971|Ggt5|23887|gamma-glutamyltransferase 5	BC113775|Ggt5|23887|gamma-glutamyltransferase 5
mm9_v1_chr6_+_41901626_41901631	0.196742	EOMES.p2	NM_027832|Sval1|71578|seminal vesicle antigen-like 1	AK018661|Sval1|71578|seminal vesicle antigen-like 1	BC114422|Sval1|71578|seminal vesicle antigen-like 1
mm9_v1_chr13_+_78337168_78337277	0.194517	EOMES.p2	AK082108|A830082K12Rik|320174|RIKEN cDNA A830082K12 gene
mm9_v1_chr6_+_86578225_86578230	0.193934	EOMES.p2	AK160494|Asprv1|67855|aspartic peptidase, retroviral-like 1
mm9_v1_chr6_+_21899614_21899692	0.193231	EOMES.p2	NM_023626|Ing3|71777|inhibitor of growth family, member 3	AY007791|Ing3|71777|inhibitor of growth family, member 3	AK080787|Ing3|71777|inhibitor of growth family, member 3	AK131993|Ing3|71777|inhibitor of growth family, member 3	BC018342|Ing3|71777|inhibitor of growth family, member 3
mm9_v1_chr5_-_31495457_31495511	0.192903	EOMES.p2	M98036|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta	NM_001127355|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta	NM_001127356|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta	NM_010122|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta
mm9_v1_chr1_-_55044032_55044295	0.191979	EOMES.p2	AK077993|Sf3b1|81898|splicing factor 3b, subunit 1	AK087700|Sf3b1|81898|splicing factor 3b, subunit 1
mm9_v1_chr10_+_61155793_61155924	0.190002	EOMES.p2	
mm9_v1_chr15_-_95909856_95909983	0.189559	EOMES.p2	AK135992|D030018L15Rik|402773|nuclear receptor coactivator 2 pseudogene	AK137238|D030018L15Rik|402773|nuclear receptor coactivator 2 pseudogene
mm9_v1_chr3_+_66789587_66789619	0.189472	EOMES.p2	AK012100|Rsrc1|66880|arginine/serine-rich coiled-coil 1	NM_025822|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK005242|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK043731|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK045433|Rsrc1|66880|arginine/serine-rich coiled-coil 1
mm9_v1_chr2_+_180721239_180721360	0.187993	EOMES.p2	NM_028518|Col20a1|73368|collagen, type XX, alpha 1
mm9_v1_chr11_-_86517662_86517713	0.18708	EOMES.p2	AK167527|Cltc|67300|clathrin, heavy polypeptide (Hc)
mm9_v1_chr11_-_74491006_74491182	0.187019	EOMES.p2	AK152284|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	AK164276|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm9_v1_chr3_+_66789621_66789657	0.186564	EOMES.p2	AK168539|Rsrc1|66880|arginine/serine-rich coiled-coil 1	BC038303|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK004742|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK169340|Rsrc1|66880|arginine/serine-rich coiled-coil 1	BC027501|Rsrc1|66880|arginine/serine-rich coiled-coil 1	BC083123|Rsrc1|66880|arginine/serine-rich coiled-coil 1
mm9_v1_chr7_-_17647732_17647775	0.184884	EOMES.p2	AF416641|Hif3a|53417|hypoxia inducible factor 3, alpha subunit	AB289606|Hif3a|53417|hypoxia inducible factor 3, alpha subunit	NM_001162950|Hif3a|53417|hypoxia inducible factor 3, alpha subunit
mm9_v1_chr7_-_134351860_134352145	0.183781	EOMES.p2	AK047320|Tbc1d10b|68449|TBC1 domain family, member 10b	AK047327|Tbc1d10b|68449|TBC1 domain family, member 10b	NM_144522|Tbc1d10b|68449|TBC1 domain family, member 10b
mm9_v1_chr9_-_88626613_88626700	0.180951	EOMES.p2	BC116240|Bcl2a1d|12047|B-cell leukemia/lymphoma 2 related protein A1d	NM_007536|Bcl2a1d|12047|B-cell leukemia/lymphoma 2 related protein A1d	BC053965|Bcl2a1d|12047|B-cell leukemia/lymphoma 2 related protein A1d
mm9_v1_chr5_-_23122181_23122418	0.180948	EOMES.p2	AB006036|Srpk2|20817|serine/arginine-rich protein specific kinase 2	BC020178|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK136861|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK169580|Srpk2|20817|serine/arginine-rich protein specific kinase 2	NM_009274|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr2_+_164159054_164159070	0.180774	EOMES.p2	S60687|Svs5|20944|seminal vesicle secretory protein 5
mm9_v1_chr7_-_26531381_26531435	0.180696	EOMES.p2	BC027844|Hnrnpul1|232989|heterogeneous nuclear ribonucleoprotein U-like 1	AK203240|Hnrnpul1|232989|heterogeneous nuclear ribonucleoprotein U-like 1
mm9_v1_chr1_-_44275718_44275775	0.179942	EOMES.p2	BC100531|4832428D23Rik|403183|RIKEN cDNA 4832428D23 gene	AK029331|4832428D23Rik|403183|RIKEN cDNA 4832428D23 gene	NM_207281|4832428D23Rik|403183|RIKEN cDNA 4832428D23 gene
mm9_v1_chr8_+_124474484_124474529	0.178823	EOMES.p2	BC021650|Banp|53325|BTG3 associated nuclear protein	BC022168|Banp|53325|BTG3 associated nuclear protein	AK154088|Banp|53325|BTG3 associated nuclear protein
mm9_v1_chr6_+_122824491_122824588	0.178282	EOMES.p2	BC119133|Necap1|67602|NECAP endocytosis associated 1	BC120841|Necap1|67602|NECAP endocytosis associated 1	AK004805|Necap1|67602|NECAP endocytosis associated 1	AK081598|Necap1|67602|NECAP endocytosis associated 1	AK168500|Necap1|67602|NECAP endocytosis associated 1	NM_026267|Necap1|67602|NECAP endocytosis associated 1	BC011466|Necap1|67602|NECAP endocytosis associated 1	AK005263|Necap1|67602|NECAP endocytosis associated 1	BC098227|Necap1|67602|NECAP endocytosis associated 1	AK220236|Necap1|67602|NECAP endocytosis associated 1
mm9_v1_chr6_-_48395082_48395088	0.178194	EOMES.p2	AK032551|Zfp467|68910|zinc finger protein 467	AK033146|Zfp467|68910|zinc finger protein 467	NM_001085415|Zfp467|68910|zinc finger protein 467	NM_001085416|Zfp467|68910|zinc finger protein 467
mm9_v1_chr10_+_76038388_76038430	0.176096	EOMES.p2	NM_080845|Ftcd|14317|formiminotransferase cyclodeaminase	AK165414|Ftcd|14317|formiminotransferase cyclodeaminase	BC024078|Ftcd|14317|formiminotransferase cyclodeaminase	BC010813|Ftcd|14317|formiminotransferase cyclodeaminase
mm9_v1_chr16_+_11405740_11405785	0.172822	EOMES.p2	AK017102|Snx29|74478|sorting nexin 29	NM_028964|Snx29|74478|sorting nexin 29	AF399755|Snx29|74478|sorting nexin 29
mm9_v1_chr7_-_52965801_52965838	0.171897	EOMES.p2	AK198375|Sphk2|56632|sphingosine kinase 2	AK202851|Sphk2|56632|sphingosine kinase 2
mm9_v1_chr3_-_83967952_83967954	0.17174	EOMES.p2	AK054540|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr7_-_148067703_148067786	0.171676	EOMES.p2	BC025878|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	AK075861|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	FJ621493|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	EU886466|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	AF299339|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	NM_001127351|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	NM_001177804|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)
mm9_v1_chr3_+_108883386_108883416	0.169034	EOMES.p2	AK015371|4930443G12Rik|74686|RIKEN cDNA 4930443G12 gene	BC147589|4930443G12Rik|74686|RIKEN cDNA 4930443G12 gene	BC147621|4930443G12Rik|74686|RIKEN cDNA 4930443G12 gene	BC172107|4930443G12Rik|74686|RIKEN cDNA 4930443G12 gene	NM_029054|4930443G12Rik|74686|RIKEN cDNA 4930443G12 gene
mm9_v1_chr10_+_111409750_111409849	0.168646	EOMES.p2	NM_178610|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK012108|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK045526|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK036447|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK146926|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC089510|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK011972|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK030560|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK032472|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK041854|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK168675|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC094236|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr5_-_88956788_88956921	0.168294	EOMES.p2	J00544|Igj|16069|immunoglobulin joining chain	AK078865|Igj|16069|immunoglobulin joining chain	M90766|Igj|16069|immunoglobulin joining chain	BC006026|Igj|16069|immunoglobulin joining chain	AK160344|Igj|16069|immunoglobulin joining chain	NM_152839|Igj|16069|immunoglobulin joining chain
mm9_v1_chrX_+_147778717_147778787	0.167354	EOMES.p2	AK030477|Fam120c|207375|family with sequence similarity 120, member C	AK086058|Fam120c|207375|family with sequence similarity 120, member C	AK156920|Fam120c|207375|family with sequence similarity 120, member C	AY150023|Fam120c|207375|family with sequence similarity 120, member C	AY150024|Fam120c|207375|family with sequence similarity 120, member C	BC137973|Fam120c|207375|family with sequence similarity 120, member C	BC171940|Fam120c|207375|family with sequence similarity 120, member C	NM_198105|Fam120c|207375|family with sequence similarity 120, member C	AK136727|Fam120c|207375|family with sequence similarity 120, member C	AK166381|Fam120c|207375|family with sequence similarity 120, member C
mm9_v1_chr8_-_113783097_113783143	0.166505	EOMES.p2	BC021306|Glg1|20340|golgi apparatus protein 1	NM_009149|Glg1|20340|golgi apparatus protein 1	X84037|Glg1|20340|golgi apparatus protein 1	AK154581|Glg1|20340|golgi apparatus protein 1
mm9_v1_chr11_-_86358252_86358308	0.166443	EOMES.p2	BC038491|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	BC071244|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK032724|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK085687|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK135716|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK163258|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	NM_001114334|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	NM_028259|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1
mm9_v1_chr7_-_49128039_49128039	0.166391	EOMES.p2	NM_001105055|Vmn2r58|628422|vomeronasal 2, receptor 58
mm9_v1_chr19_+_32831986_32831994	0.165678	EOMES.p2	U92437|Pten|19211|phosphatase and tensin homolog
mm9_v1_chr13_-_81772121_81772142	0.163247	EOMES.p2	BC080679|Gpr98|110789|G protein-coupled receptor 98	AB086166|Gpr98|110789|G protein-coupled receptor 98	AB086167|Gpr98|110789|G protein-coupled receptor 98	AK053565|Gpr98|110789|G protein-coupled receptor 98	AF435926|Gpr98|110789|G protein-coupled receptor 98	NM_054053|Gpr98|110789|G protein-coupled receptor 98
mm9_v1_chr7_+_25139907_25140057	0.162546	EOMES.p2	AK009294|2310011E23Rik|69610|RIKEN cDNA 2310011E23 gene
mm9_v1_chr7_+_17334480_17334612	0.160821	EOMES.p2	AK208745|Ap2s1|232910|adaptor-related protein complex 2, sigma 1 subunit
mm9_v1_chr4_-_35792385_35792444	0.16014	EOMES.p2	BC137866|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC144985|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC145692|Lingo2|242384|leucine rich repeat and Ig domain containing 2	AK045639|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_001166001|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_175516|Lingo2|242384|leucine rich repeat and Ig domain containing 2
mm9_v1_chr9_-_57287763_57287952	0.15987	EOMES.p2	AK031599|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	AK038628|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	AK036042|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	AK078825|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	AK007887|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	BC004779|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	NM_176831|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase
mm9_v1_chr15_+_22966203_22966220	0.159811	EOMES.p2	AK082311|Cdh18|320865|cadherin 18	AK137430|Cdh18|320865|cadherin 18	NM_001081299|Cdh18|320865|cadherin 18
mm9_v1_chr1_+_74648028_74648212	0.159664	EOMES.p2	NM_175031|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	AK029842|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	BC043103|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	AK007188|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	BC049721|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	BC058698|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)
mm9_v1_chr3_-_91927868_91927868	0.158107	EOMES.p2	AK079463|Prr9|109314|proline rich 9	NM_175424|Prr9|109314|proline rich 9
mm9_v1_chr16_+_23107538_23107551	0.157886	EOMES.p2	NM_001123037|Eif4a2|13682|eukaryotic translation initiation factor 4A2	NM_001123038|Eif4a2|13682|eukaryotic translation initiation factor 4A2	NM_013506|Eif4a2|13682|eukaryotic translation initiation factor 4A2
mm9_v1_chr7_+_15245056_15245056	0.156974	EOMES.p2	BC099488|Gm4745|194588|predicted gene 4745	NM_001038676|Gm4745|194588|predicted gene 4745
mm9_v1_chr9_+_72892697_72892708	0.155599	EOMES.p2	AK010373|Rab27a|11891|RAB27A, member RAS oncogene family
mm9_v1_chr1_+_94830952_94831032	0.155024	EOMES.p2	AF089089|Capn10|23830|calpain 10	NM_011796|Capn10|23830|calpain 10
mm9_v1_chr11_+_80242103_80242184	0.154684	EOMES.p2	AK145731|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK166950|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	NM_178616|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK168289|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK051738|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK076002|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK140773|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK167559|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC119136|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC119138|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK007547|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC090980|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK089942|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK136049|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC100595|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC090664|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC037590|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC055457|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
mm9_v1_chrY_+_155091_155155	0.15364	EOMES.p2	AF150963|Ube1y1|22202|ubiquitin-activating enzyme E1, Chr Y 1	AK030031|Ube1y1|22202|ubiquitin-activating enzyme E1, Chr Y 1	NM_011667|Ube1y1|22202|ubiquitin-activating enzyme E1, Chr Y 1
mm9_v1_chr15_-_101294195_101294195	0.152644	EOMES.p2	NM_001166157|Krt81|64818|keratin 81
mm9_v1_chr1_-_152313294_152313294	0.151713	EOMES.p2	AB034730|Prg4|96875|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	AK149469|Prg4|96875|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	NM_001110146|Prg4|96875|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	NM_021400|Prg4|96875|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
mm9_v1_chr5_-_76760118_76760180	0.149354	EOMES.p2	AK133140|Pdcl2|79455|phosducin-like 2	AK005814|Pdcl2|79455|phosducin-like 2	NM_023508|Pdcl2|79455|phosducin-like 2	BC048432|Pdcl2|79455|phosducin-like 2	AK006773|Pdcl2|79455|phosducin-like 2	AK005602|Pdcl2|79455|phosducin-like 2	AK006040|Pdcl2|79455|phosducin-like 2	AK132738|Pdcl2|79455|phosducin-like 2
mm9_v1_chr4_-_126002442_126002551	0.149255	EOMES.p2	AB027138|Tekt2|24084|tektin 2	NM_011902|Tekt2|24084|tektin 2	BC008140|Tekt2|24084|tektin 2
mm9_v1_chr11_-_47192793_47192803	0.14761	EOMES.p2	BC130019|Sgcd|24052|sarcoglycan, delta (dystrophin-associated glycoprotein)	AK040974|Sgcd|24052|sarcoglycan, delta (dystrophin-associated glycoprotein)	NM_011891|Sgcd|24052|sarcoglycan, delta (dystrophin-associated glycoprotein)
mm9_v1_chr19_-_7416286_7416363	0.147571	EOMES.p2	BC058556|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	AK172444|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080388|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080389|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_007928|Mark2|13728|MAP/microtubule affinity-regulating kinase 2
mm9_v1_chr9_-_58049765_58049823	0.146822	EOMES.p2	AK129367|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2
mm9_v1_chr10_-_26094990_26095024	0.14672	EOMES.p2	AK045667|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)	NM_172787|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)	AK049597|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)
mm9_v1_chr17_+_19641774_19641774	0.144832	EOMES.p2	NM_001104562|Vmn2r100|627537|vomeronasal 2, receptor 100
mm9_v1_chr16_-_50591201_50591266	0.143828	EOMES.p2	AK005741|Ccdc54|69339|coiled-coil domain containing 54	BC049741|Ccdc54|69339|coiled-coil domain containing 54	NM_027046|Ccdc54|69339|coiled-coil domain containing 54
mm9_v1_chr18_+_61747381_61747495	0.143478	EOMES.p2	AK217508|Csnk1a1|93687|casein kinase 1, alpha 1	AK218260|Csnk1a1|93687|casein kinase 1, alpha 1	AK211333|Csnk1a1|93687|casein kinase 1, alpha 1
mm9_v1_chr17_+_35378690_35378814	0.142684	EOMES.p2	NM_019693|Ddx39b|53817|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	AK002779|H2-Q6|110557|histocompatibility 2, Q region locus 6	AK171507|Ddx39b|53817|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	AK051034|Ddx39b|53817|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	BC011067|Ddx39b|53817|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	BC024859|Ddx39b|53817|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm9_v1_chr11_+_98412406_98412465	0.142466	EOMES.p2	AK137467|Zpbp2|69376|zona pellucida binding protein 2	BC089476|Zpbp2|69376|zona pellucida binding protein 2	NM_001166494|Zpbp2|69376|zona pellucida binding protein 2	NM_001166495|Zpbp2|69376|zona pellucida binding protein 2	NM_027061|Zpbp2|69376|zona pellucida binding protein 2	NM_199419|Zpbp2|69376|zona pellucida binding protein 2	BC050986|Zpbp2|69376|zona pellucida binding protein 2	AK006058|Zpbp2|69376|zona pellucida binding protein 2	AY251601|Zpbp2|69376|zona pellucida binding protein 2	AY251602|Zpbp2|69376|zona pellucida binding protein 2
mm9_v1_chr7_+_16335718_16335725	0.141008	EOMES.p2	NM_145709|Obox5|252829|oocyte specific homeobox 5	BC052664|Obox5|252829|oocyte specific homeobox 5
mm9_v1_chr19_-_54018725_54018744	0.140817	EOMES.p2	AK016185|Bbip1|66360|BBSome interacting protein 1
mm9_v1_chr12_+_56699903_56699903	0.139979	EOMES.p2	NM_020287|Insm2|56856|insulinoma-associated 2
mm9_v1_chr1_-_153937097_153937320	0.139257	EOMES.p2	AK167392|1700025G04Rik|69399|RIKEN cDNA 1700025G04 gene	BC034723|1700025G04Rik|69399|RIKEN cDNA 1700025G04 gene	BC055912|1700025G04Rik|69399|RIKEN cDNA 1700025G04 gene
mm9_v1_chr7_+_51357661_51357727	0.138151	EOMES.p2	AB039276|Klk1b21|16616|kallikrein 1-related peptidase b21	NM_010642|Klk1b21|16616|kallikrein 1-related peptidase b21	AK144221|Klk1b21|16616|kallikrein 1-related peptidase b21	BC145383|Klk1b21|16616|kallikrein 1-related peptidase b21	BC012243|Klk1b21|16616|kallikrein 1-related peptidase b21
mm9_v1_chr5_+_34185760_34185844	0.138151	EOMES.p2	NM_001081102|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_001177884|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_175231|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	BC079668|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)
mm9_v1_chr5_+_66154740_66154759	0.13741	EOMES.p2	BC054549|N4bp2|333789|NEDD4 binding protein 2	NM_001024917|N4bp2|333789|NEDD4 binding protein 2
mm9_v1_chr16_+_33380860_33381006	0.137388	EOMES.p2	NM_011749|Zfp148|22661|zinc finger protein 148	AF316548|Zfp148|22661|zinc finger protein 148	X98096|Zfp148|22661|zinc finger protein 148	BC026144|Zfp148|22661|zinc finger protein 148
mm9_v1_chr2_+_84518544_84518790	0.135822	EOMES.p2	NM_025885|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK010552|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK005399|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK168787|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK160579|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC082559|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC055404|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC044207|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC044302|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK209282|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)
mm9_v1_chr11_-_69495447_69495585	0.135721	EOMES.p2	NM_030702|Senp3|80886|SUMO/sentrin specific peptidase 3	AK088608|Senp3|80886|SUMO/sentrin specific peptidase 3	NM_001163571|Senp3|80886|SUMO/sentrin specific peptidase 3
mm9_v1_chrX_+_157600681_157600703	0.1357	EOMES.p2	AK040521|Scml2|107815|sex comb on midleg-like 2 (Drosophila)	AK031490|Scml2|107815|sex comb on midleg-like 2 (Drosophila)	NM_133194|Scml2|107815|sex comb on midleg-like 2 (Drosophila)
mm9_v1_chr11_-_74739449_74739483	0.135152	EOMES.p2	AK157122|Srr|27364|serine racemase
mm9_v1_chr15_-_12522310_12522310	0.132692	EOMES.p2	NM_001081064|Pdzd2|68070|PDZ domain containing 2
mm9_v1_chr7_+_4971977_4971977	0.132658	EOMES.p2	AK154737|Zfp865|319748|zinc finger protein 865	NM_001033383|Zfp865|319748|zinc finger protein 865
mm9_v1_chr8_-_128016609_128016654	0.130165	EOMES.p2	NM_001081337|Sipa1l2|244668|signal-induced proliferation-associated 1 like 2	BC150682|Sipa1l2|244668|signal-induced proliferation-associated 1 like 2
mm9_v1_chr4_+_15211137_15211173	0.130118	EOMES.p2	AK162736|Tmem64|100201|transmembrane protein 64
mm9_v1_chr14_-_11994524_11994548	0.129387	EOMES.p2	AF055573|Fhit|14198|fragile histidine triad gene	NM_010210|Fhit|14198|fragile histidine triad gene	AF047699|Fhit|14198|fragile histidine triad gene
mm9_v1_chr1_-_89291303_89291307	0.12889	EOMES.p2	NM_001110227|Kcnj13|100040591|potassium inwardly-rectifying channel, subfamily J, member 13
mm9_v1_chr6_-_35258102_35258131	0.128664	EOMES.p2	BC089161|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK036354|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	NM_172892|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK038937|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK139428|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4
mm9_v1_chr19_+_22767272_22767282	0.127491	EOMES.p2	AK053673|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK046908|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK077331|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK082141|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK142504|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK161909|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK163890|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3
mm9_v1_chr7_-_110926856_110926856	0.126621	EOMES.p2	NM_013620|Olfr68|18369|olfactory receptor 68
mm9_v1_chr9_-_110892114_110892227	0.12646	EOMES.p2	AY562227|Rtp3|235636|receptor transporter protein 3	BC150678|Rtp3|235636|receptor transporter protein 3	AJ428064|Rtp3|235636|receptor transporter protein 3	BC112903|Rtp3|235636|receptor transporter protein 3	NM_153100|Rtp3|235636|receptor transporter protein 3
mm9_v1_chr7_+_148414663_148414708	0.124705	EOMES.p2	NM_001081118|Phrf1|101471|PHD and ring finger domains 1
mm9_v1_chr18_+_34919205_34919226	0.124651	EOMES.p2	AK044469|Fam53c|66306|family with sequence similarity 53, member C	AK135712|Fam53c|66306|family with sequence similarity 53, member C	AK154214|Fam53c|66306|family with sequence similarity 53, member C	AK166841|Fam53c|66306|family with sequence similarity 53, member C	BC044896|Fam53c|66306|family with sequence similarity 53, member C
mm9_v1_chr8_+_124474432_124474469	0.124271	EOMES.p2	NM_001110100|Banp|53325|BTG3 associated nuclear protein	NM_016812|Banp|53325|BTG3 associated nuclear protein	BC062641|Banp|53325|BTG3 associated nuclear protein
mm9_v1_chr3_+_101814059_101814199	0.123523	EOMES.p2	S40532|Nhlh2|18072|nescient helix loop helix 2	AK031747|Nhlh2|18072|nescient helix loop helix 2	NM_178777|Nhlh2|18072|nescient helix loop helix 2	AK053837|Nhlh2|18072|nescient helix loop helix 2	AK053046|Nhlh2|18072|nescient helix loop helix 2	AK082728|Nhlh2|18072|nescient helix loop helix 2	AK084160|Nhlh2|18072|nescient helix loop helix 2	AK084308|Nhlh2|18072|nescient helix loop helix 2	BC058413|Nhlh2|18072|nescient helix loop helix 2
mm9_v1_chr18_-_36925819_36925867	0.123038	EOMES.p2	AY321066|Dnd1|213236|dead end homolog 1 (zebrafish)	AK141343|Dnd1|213236|dead end homolog 1 (zebrafish)	BC034897|Dnd1|213236|dead end homolog 1 (zebrafish)	NM_173383|Dnd1|213236|dead end homolog 1 (zebrafish)
mm9_v1_chr14_-_51550327_51550600	0.122832	EOMES.p2	BC049945|Tmem55b|219024|transmembrane protein 55b	BC039161|Tmem55b|219024|transmembrane protein 55b	BC058171|Tmem55b|219024|transmembrane protein 55b	BC106163|Tmem55b|219024|transmembrane protein 55b	AK152640|Tmem55b|219024|transmembrane protein 55b	AK152658|Tmem55b|219024|transmembrane protein 55b	AK144251|Tmem55b|219024|transmembrane protein 55b	NM_001033271|Tmem55b|219024|transmembrane protein 55b	AK159641|Tmem55b|219024|transmembrane protein 55b	AK169026|Tmem55b|219024|transmembrane protein 55b	BC027355|Tmem55b|219024|transmembrane protein 55b
mm9_v1_chr18_+_65048630_65048682	0.120648	EOMES.p2	AK042621|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr10_-_44178372_44178385	0.120197	EOMES.p2	AK149344|Prdm1|12142|PR domain containing 1, with ZNF domain
mm9_v1_chr6_+_57020888_57020888	0.119581	EOMES.p2	BC132241|Vmn1r9|171203|vomeronasal 1 receptor 9	BC132577|Vmn1r9|171203|vomeronasal 1 receptor 9	NM_134185|Vmn1r9|171203|vomeronasal 1 receptor 9
mm9_v1_chrX_+_106029816_106029906	0.118468	EOMES.p2	AK086455|2810403D21Rik|69964|RIKEN cDNA 2810403D21 gene
mm9_v1_chr7_+_51462804_51462808	0.118136	EOMES.p2	BC034518|Klk1b4|18048|kallikrein 1-related pepidase b4	NM_010915|Klk1b4|18048|kallikrein 1-related pepidase b4	M11434|Klk1b4|18048|kallikrein 1-related pepidase b4
mm9_v1_chr11_+_120469790_120469822	0.117925	EOMES.p2	AK141698|Npb|208990|neuropeptide B	NM_153288|Npb|208990|neuropeptide B	AB085945|Npb|208990|neuropeptide B	BC134361|Npb|208990|neuropeptide B
mm9_v1_chr7_+_16481472_16481519	0.11754	EOMES.p2	AK145701|Crxos1|546024|Crx opposite strand transcript 1	NM_001033638|Crxos1|546024|Crx opposite strand transcript 1	AB472692|Crxos1|546024|Crx opposite strand transcript 1	AB472693|Crxos1|546024|Crx opposite strand transcript 1	AY593966|Crxos1|546024|Crx opposite strand transcript 1
mm9_v1_chr18_+_36441115_36441157	0.116085	EOMES.p2	AK075821|Pura|19290|purine rich element binding protein A
mm9_v1_chr8_-_87538229_87538429	0.11587	EOMES.p2	BC036163|Best2|212989|bestrophin 2	NM_001130193|Best2|212989|bestrophin 2	BC036157|Best2|212989|bestrophin 2	NM_001130194|Best2|212989|bestrophin 2	NM_145388|Best2|212989|bestrophin 2	AY450428|Best2|212989|bestrophin 2
mm9_v1_chr17_-_45704908_45704999	0.115097	EOMES.p2	
mm9_v1_chr1_-_74647935_74647979	0.114711	EOMES.p2	BC022715|Rnf25|57751|ring finger protein 25	AK171752|Rnf25|57751|ring finger protein 25	AF171060|Rnf25|57751|ring finger protein 25	BC037100|Rnf25|57751|ring finger protein 25	BC048821|Rnf25|57751|ring finger protein 25	AK002399|Rnf25|57751|ring finger protein 25	NM_021313|Rnf25|57751|ring finger protein 25
mm9_v1_chr11_-_98054597_98054606	0.114362	EOMES.p2	AK049203|Med1|19014|mediator complex subunit 1	AK054437|Med1|19014|mediator complex subunit 1	NM_001080118|Med1|19014|mediator complex subunit 1	NM_134027|Med1|19014|mediator complex subunit 1
mm9_v1_chr7_+_14318850_14318863	0.113992	EOMES.p2	AK149424|Sult2a2|100043194|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 2	NM_009286|Sult2a2|100043194|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 2
mm9_v1_chr5_-_138042267_138042299	0.113153	EOMES.p2	BC039620|Mospd3|68929|motile sperm domain containing 3	NM_030037|Mospd3|68929|motile sperm domain containing 3	BC034167|Mospd3|68929|motile sperm domain containing 3
mm9_v1_chr17_-_33783578_33783579	0.110704	EOMES.p2	AK150477|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M
mm9_v1_chr18_+_50139080_50139182	0.109224	EOMES.p2	NM_001177759|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	NM_001177760|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK170322|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK163339|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8
mm9_v1_chr6_+_142294174_142294216	0.108593	EOMES.p2	AK148411|Pyroxd1|232491|pyridine nucleotide-disulphide oxidoreductase domain 1	BC027061|Pyroxd1|232491|pyridine nucleotide-disulphide oxidoreductase domain 1	BC022914|Pyroxd1|232491|pyridine nucleotide-disulphide oxidoreductase domain 1	AK165677|Pyroxd1|232491|pyridine nucleotide-disulphide oxidoreductase domain 1	NM_183165|Pyroxd1|232491|pyridine nucleotide-disulphide oxidoreductase domain 1
mm9_v1_chr17_-_36046961_36047023	0.108387	EOMES.p2	AK049682|Atat1|73242|alpha tubulin acetyltransferase 1	AK014265|Atat1|73242|alpha tubulin acetyltransferase 1	AK011750|Atat1|73242|alpha tubulin acetyltransferase 1	AK034725|Atat1|73242|alpha tubulin acetyltransferase 1	AK133694|Atat1|73242|alpha tubulin acetyltransferase 1	BC030669|Atat1|73242|alpha tubulin acetyltransferase 1	AK011350|Atat1|73242|alpha tubulin acetyltransferase 1	BC028847|Atat1|73242|alpha tubulin acetyltransferase 1	AK011838|Atat1|73242|alpha tubulin acetyltransferase 1	AK028297|Atat1|73242|alpha tubulin acetyltransferase 1	NM_001142744|Atat1|73242|alpha tubulin acetyltransferase 1	NM_001142745|Atat1|73242|alpha tubulin acetyltransferase 1	NM_028476|Atat1|73242|alpha tubulin acetyltransferase 1
mm9_v1_chr1_+_172238933_172238992	0.108275	EOMES.p2	AK005990|1700015E13Rik|76925|RIKEN cDNA 1700015E13 gene	BC099563|1700015E13Rik|76925|RIKEN cDNA 1700015E13 gene	NM_001039593|1700015E13Rik|76925|RIKEN cDNA 1700015E13 gene	BC132313|1700015E13Rik|76925|RIKEN cDNA 1700015E13 gene	BC132315|1700015E13Rik|76925|RIKEN cDNA 1700015E13 gene
mm9_v1_chr11_+_79845841_79845980	0.108231	EOMES.p2	AK076010|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)
mm9_v1_chr11_-_54776398_54776449	0.108219	EOMES.p2	AK172890|Tnip1|57783|TNFAIP3 interacting protein 1	AK156131|Tnip1|57783|TNFAIP3 interacting protein 1	BC008665|Tnip1|57783|TNFAIP3 interacting protein 1	AJ242777|Tnip1|57783|TNFAIP3 interacting protein 1	AJ242778|Tnip1|57783|TNFAIP3 interacting protein 1	AK170841|Tnip1|57783|TNFAIP3 interacting protein 1	NM_021327|Tnip1|57783|TNFAIP3 interacting protein 1
mm9_v1_chr19_+_8692485_8692668	0.107525	EOMES.p2	NM_008766|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	BC021647|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	U52842|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	AK035971|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6
mm9_v1_chr6_+_116214215_116214252	0.10736	EOMES.p2	AK089032|Anubl1|67492|AN1, ubiquitin-like, homolog (Xenopus laevis)	NM_001081317|Anubl1|67492|AN1, ubiquitin-like, homolog (Xenopus laevis)
mm9_v1_chr1_-_176851949_176851953	0.105483	EOMES.p2	AB011030|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	NM_011825|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	AK142008|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm9_v1_chrX_-_159987479_159987608	0.103144	EOMES.p2	BC113145|Grpr|14829|gastrin releasing peptide receptor	M61000|Grpr|14829|gastrin releasing peptide receptor	NM_008177|Grpr|14829|gastrin releasing peptide receptor	AK033473|Grpr|14829|gastrin releasing peptide receptor	M57922|Grpr|14829|gastrin releasing peptide receptor
mm9_v1_chr10_-_127735123_127735139	0.102227	EOMES.p2	BC019953|Il23a|83430|interleukin 23, alpha subunit p19	AF301619|Il23a|83430|interleukin 23, alpha subunit p19	NM_031252|Il23a|83430|interleukin 23, alpha subunit p19
mm9_v1_chr11_-_69495203_69495445	0.102172	EOMES.p2	AY008764|Senp3|80886|SUMO/sentrin specific peptidase 3	BC037014|Senp3|80886|SUMO/sentrin specific peptidase 3	AK045071|Senp3|80886|SUMO/sentrin specific peptidase 3
mm9_v1_chr6_-_128531620_128531628	0.101585	EOMES.p2	AK138836|BC048546|232400|cDNA sequence BC048546	NM_001001179|BC048546|232400|cDNA sequence BC048546	AK161184|BC048546|232400|cDNA sequence BC048546
mm9_v1_chr8_-_93659394_93659394	0.100971	EOMES.p2	NM_010241|Aktip|14339|thymoma viral proto-oncogene 1 interacting protein
mm9_v1_chr1_+_173053280_173053294	0.0997842	EOMES.p2	BC061017|1700009P17Rik|75472|RIKEN cDNA 1700009P17 gene
mm9_v1_chr6_+_123258350_123258350	0.0996088	EOMES.p2	NM_001104632|Vmn2r19|232358|vomeronasal 2, receptor 19
mm9_v1_chr11_+_74584328_74584437	0.0978703	EOMES.p2	AK013306|Mett10d|67493|methyltransferase 10 domain containing	BC022902|Mett10d|67493|methyltransferase 10 domain containing	AK145022|Mett10d|67493|methyltransferase 10 domain containing	AK011780|Mett10d|67493|methyltransferase 10 domain containing	AK012739|Mett10d|67493|methyltransferase 10 domain containing	NM_026197|Mett10d|67493|methyltransferase 10 domain containing	AK145662|Mett10d|67493|methyltransferase 10 domain containing	AK029045|Mett10d|67493|methyltransferase 10 domain containing	AK161574|Mett10d|67493|methyltransferase 10 domain containing	BC003467|Mett10d|67493|methyltransferase 10 domain containing	AK168798|Mett10d|67493|methyltransferase 10 domain containing	BC037452|Mett10d|67493|methyltransferase 10 domain containing	BC054724|Mett10d|67493|methyltransferase 10 domain containing	BC049897|Mett10d|67493|methyltransferase 10 domain containing
mm9_v1_chr5_+_137735875_137735896	0.0970719	EOMES.p2	BC087958|Ufsp1|70240|UFM1-specific peptidase 1	BC016577|Ufsp1|70240|UFM1-specific peptidase 1	AK012343|Ufsp1|70240|UFM1-specific peptidase 1	NM_027356|Ufsp1|70240|UFM1-specific peptidase 1
mm9_v1_chr17_-_79306331_79306331	0.0967708	EOMES.p2	NM_001163625|Sult6b1|73671|sulfotransferase family, cytosolic, 6B, member 1
mm9_v1_chr19_-_7351647_7351726	0.0967273	EOMES.p2	AK194221|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	AK218760|Mark2|13728|MAP/microtubule affinity-regulating kinase 2
mm9_v1_chr7_+_51206036_51206051	0.0967014	EOMES.p2	BC031798|Klk1b8|16624|kallikrein 1-related peptidase b8	NM_008457|Klk1b8|16624|kallikrein 1-related peptidase b8	X03994|Klk1b8|16624|kallikrein 1-related peptidase b8
mm9_v1_chr16_-_92826239_92826287	0.0965884	EOMES.p2	BC069929|Runx1|12394|runt related transcription factor 1	AK137493|Runx1|12394|runt related transcription factor 1
mm9_v1_chr11_+_102977638_102977680	0.0962847	EOMES.p2	AK134535|Hexim1|192231|hexamethylene bis-acetamide inducible 1	AY090614|Hexim1|192231|hexamethylene bis-acetamide inducible 1	NM_138753|Hexim1|192231|hexamethylene bis-acetamide inducible 1
mm9_v1_chr11_-_74710462_74710503	0.0950213	EOMES.p2	AK122273|Sgsm2|97761|small G protein signaling modulator 2
mm9_v1_chr17_+_71901400_71901422	0.0947219	EOMES.p2	AK077138|Spdya|70891|speedy homolog A (Xenopus laevis)	NM_001142631|Spdya|70891|speedy homolog A (Xenopus laevis)	NM_029254|Spdya|70891|speedy homolog A (Xenopus laevis)	AK014910|Spdya|70891|speedy homolog A (Xenopus laevis)	BC147706|Spdya|70891|speedy homolog A (Xenopus laevis)	BC147719|Spdya|70891|speedy homolog A (Xenopus laevis)
mm9_v1_chr19_-_32182638_32182709	0.0933458	EOMES.p2	AB037111|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK080951|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK041937|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK047692|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK046540|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK166100|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK034493|Asah2|54447|N-acylsphingosine amidohydrolase 2
mm9_v1_chr16_-_88869611_88869654	0.0932222	EOMES.p2	AF345292|Krtap16-2|170652|keratin associated protein 16-2	AF345299|Krtap16-9|170657|keratin associated protein 16-9	NM_130876|Krtap16-9|170657|keratin associated protein 16-9
mm9_v1_chr11_+_95275392_95275501	0.0922492	EOMES.p2	NM_025287|Spop|20747|speckle-type POZ protein	AK168546|Spop|20747|speckle-type POZ protein	AK030746|Spop|20747|speckle-type POZ protein	AK132383|Spop|20747|speckle-type POZ protein	BC045205|Spop|20747|speckle-type POZ protein	AK004669|Spop|20747|speckle-type POZ protein	AK159482|Spop|20747|speckle-type POZ protein	AK028201|Spop|20747|speckle-type POZ protein	BC064809|Spop|20747|speckle-type POZ protein	AK168185|Spop|20747|speckle-type POZ protein	AK166581|Spop|20747|speckle-type POZ protein	AK160858|Spop|20747|speckle-type POZ protein
mm9_v1_chr6_+_83008064_83008097	0.0915857	EOMES.p2	AK010062|Dqx1|93838|DEAQ RNA-dependent ATPase
mm9_v1_chr1_+_17591981_17592085	0.0914405	EOMES.p2	AK030960|Pi15|94227|peptidase inhibitor 15	NM_053191|Pi15|94227|peptidase inhibitor 15	AK040961|Pi15|94227|peptidase inhibitor 15	AF329196|Pi15|94227|peptidase inhibitor 15	BC116705|Pi15|94227|peptidase inhibitor 15
mm9_v1_chr9_+_67607229_67607244	0.0913068	EOMES.p2	NM_001081314|C2cd4b|75697|C2 calcium-dependent domain containing 4B	BC039571|C2cd4b|75697|C2 calcium-dependent domain containing 4B
mm9_v1_chr18_-_37803782_37803859	0.0908327	EOMES.p2	BC029673|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AF144562|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK075700|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK029380|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK076362|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK089054|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_175770|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr19_+_7457020_7457026	0.0906525	EOMES.p2	AK018939|1700105P06Rik|654802|RIKEN cDNA 1700105P06 gene
mm9_v1_chr6_+_123179860_123179891	0.0904689	EOMES.p2	NM_001190320|Clec4n|56620|C-type lectin domain family 4, member n	NM_001190321|Clec4n|56620|C-type lectin domain family 4, member n	NM_020001|Clec4n|56620|C-type lectin domain family 4, member n	AK089166|Clec4n|56620|C-type lectin domain family 4, member n	AK131697|Clec4n|56620|C-type lectin domain family 4, member n	AK154673|Clec4n|56620|C-type lectin domain family 4, member n	AK171046|Clec4n|56620|C-type lectin domain family 4, member n	AF240357|Clec4n|56620|C-type lectin domain family 4, member n	AF240358|Clec4n|56620|C-type lectin domain family 4, member n	AF240359|Clec4n|56620|C-type lectin domain family 4, member n	BC023008|Clec4n|56620|C-type lectin domain family 4, member n
mm9_v1_chr15_-_78994753_78994921	0.0897251	EOMES.p2	BC023356|Sox10|20665|SRY-box containing gene 10	BC051058|Sox10|20665|SRY-box containing gene 10	AK185165|Sox10|20665|SRY-box containing gene 10	AK193670|Sox10|20665|SRY-box containing gene 10	AK185297|Sox10|20665|SRY-box containing gene 10	BC025171|Sox10|20665|SRY-box containing gene 10	AK043220|Sox10|20665|SRY-box containing gene 10	U66141|Sox10|20665|SRY-box containing gene 10	AK042542|Sox10|20665|SRY-box containing gene 10	NM_011437|Sox10|20665|SRY-box containing gene 10
mm9_v1_chr6_-_145383444_145383444	0.0881555	EOMES.p2	AK016641|Ifltd1|74071|intermediate filament tail domain containing 1	NM_028742|Ifltd1|74071|intermediate filament tail domain containing 1
mm9_v1_chr7_-_130513339_130513430	0.0878428	EOMES.p2	AK036468|Arhgap17|70497|Rho GTPase activating protein 17	AK036617|Arhgap17|70497|Rho GTPase activating protein 17	AK152266|Arhgap17|70497|Rho GTPase activating protein 17	AK152301|Arhgap17|70497|Rho GTPase activating protein 17	AK149986|Arhgap17|70497|Rho GTPase activating protein 17	AK147010|Arhgap17|70497|Rho GTPase activating protein 17	AK046411|Arhgap17|70497|Rho GTPase activating protein 17	AK161636|Arhgap17|70497|Rho GTPase activating protein 17	NM_001122640|Arhgap17|70497|Rho GTPase activating protein 17	NM_001122641|Arhgap17|70497|Rho GTPase activating protein 17	NM_001122642|Arhgap17|70497|Rho GTPase activating protein 17	NM_001122643|Arhgap17|70497|Rho GTPase activating protein 17	NM_144529|Arhgap17|70497|Rho GTPase activating protein 17
mm9_v1_chr11_-_99471502_99471502	0.0872222	EOMES.p2	NM_001099346|Gm11937|100041488|predicted gene 11937
mm9_v1_chrX_+_80194208_80194241	0.0871701	EOMES.p2	AK052856|Dmd|13405|dystrophin, muscular dystrophy	NM_007868|Dmd|13405|dystrophin, muscular dystrophy	M68859|Dmd|13405|dystrophin, muscular dystrophy
mm9_v1_chr11_-_82805221_82805331	0.086264	EOMES.p2	AY261801|Slfn9|237886|schlafen 9	AY261800|Slfn9|237886|schlafen 9	AK036579|Slfn9|237886|schlafen 9	NM_172796|Slfn9|237886|schlafen 9
mm9_v1_chr4_-_100854453_100854462	0.0855759	EOMES.p2	AK181063|Jak1|16451|Janus kinase 1
mm9_v1_chr5_-_31495395_31495419	0.0855248	EOMES.p2	BC021884|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta	AK154364|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta	AK158282|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta
mm9_v1_chr16_-_38341897_38341905	0.0846633	EOMES.p2	AK045121|4932425I24Rik|320214|RIKEN cDNA 4932425I24 gene
mm9_v1_chr6_-_85770936_85770965	0.0832586	EOMES.p2	BC024605|Cml5|69049|camello-like 5	BC014696|Cml3|93674|camello-like 3	AK007530|Cml5|69049|camello-like 5	NM_023493|Cml5|69049|camello-like 5
mm9_v1_chr14_-_8826695_8826718	0.0827711	EOMES.p2	NM_007870|Dnase1l3|13421|deoxyribonuclease 1-like 3
mm9_v1_chr3_+_30501527_30501587	0.0823484	EOMES.p2	AK013445|Mynn|80732|myoneurin	AK030898|Mynn|80732|myoneurin	AK147959|Mynn|80732|myoneurin	AK136107|Mynn|80732|myoneurin	AK014315|Mynn|80732|myoneurin	AK019238|Mynn|80732|myoneurin	AK163261|Mynn|80732|myoneurin	AK163264|Mynn|80732|myoneurin	BC007477|Mynn|80732|myoneurin	AK029657|Mynn|80732|myoneurin
mm9_v1_chr7_+_26682681_26682715	0.081275	EOMES.p2	BC060973|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10	NM_009999|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10	AF128849|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10	M21856|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10	X99715|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10
mm9_v1_chr6_+_70676803_70676846	0.0812626	EOMES.p2	
mm9_v1_chr7_-_3820753_3820811	0.0802207	EOMES.p2	AK137448|Gm10693|675749|predicted pseudogene 10693
mm9_v1_chr6_-_71212223_71212274	0.0796669	EOMES.p2	AK027936|Smyd1|12180|SET and MYND domain containing 1	AK076266|Smyd1|12180|SET and MYND domain containing 1	AK142153|Smyd1|12180|SET and MYND domain containing 1	U76373|Smyd1|12180|SET and MYND domain containing 1	U76374|Smyd1|12180|SET and MYND domain containing 1	AK142252|Smyd1|12180|SET and MYND domain containing 1	BC076601|Smyd1|12180|SET and MYND domain containing 1	NM_001160127|Smyd1|12180|SET and MYND domain containing 1	NM_009762|Smyd1|12180|SET and MYND domain containing 1
mm9_v1_chr17_+_34726750_34726889	0.0792127	EOMES.p2	AK155617|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	NM_134116|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	AK146245|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	BC085186|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	AK144833|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	BC080804|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)
mm9_v1_chr11_+_95703981_95704031	0.0778406	EOMES.p2	NM_001038664|Gngt2|14710|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	AK010554|Gngt2|14710|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	BC061005|Gngt2|14710|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
mm9_v1_chr5_+_93696566_93696638	0.0773422	EOMES.p2	NM_007635|Ccng2|12452|cyclin G2	AK170651|Ccng2|12452|cyclin G2	AF005885|Ccng2|12452|cyclin G2
mm9_v1_chr9_-_107537602_107537678	0.076391	EOMES.p2	M13963|Gnai2|14678|guanine nucleotide binding protein (G protein), alpha inhibiting 2	BC037130|Gnai2|14678|guanine nucleotide binding protein (G protein), alpha inhibiting 2	BC065159|Gnai2|14678|guanine nucleotide binding protein (G protein), alpha inhibiting 2	AK167388|Gnai2|14678|guanine nucleotide binding protein (G protein), alpha inhibiting 2	NM_008138|Gnai2|14678|guanine nucleotide binding protein (G protein), alpha inhibiting 2	AK157998|Gnai2|14678|guanine nucleotide binding protein (G protein), alpha inhibiting 2	AK159222|Gnai2|14678|guanine nucleotide binding protein (G protein), alpha inhibiting 2
mm9_v1_chr5_-_100392845_100392900	0.0762595	EOMES.p2	AK053251|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr11_-_86621074_86621127	0.0759813	EOMES.p2	BC058276|Dhx40|67487|DEAH (Asp-Glu-Ala-His) box polypeptide 40	AK135592|Dhx40|67487|DEAH (Asp-Glu-Ala-His) box polypeptide 40	AK031000|Dhx40|67487|DEAH (Asp-Glu-Ala-His) box polypeptide 40	AK004610|Dhx40|67487|DEAH (Asp-Glu-Ala-His) box polypeptide 40
mm9_v1_chr5_-_136384495_136384514	0.0754369	EOMES.p2	
mm9_v1_chr12_-_3426640_3426765	0.0750091	EOMES.p2	AK035515|1110002L01Rik|100043040|RIKEN cDNA 1110002L01 gene	AK031200|1110002L01Rik|100043040|RIKEN cDNA 1110002L01 gene
mm9_v1_chr1_+_108835529_108835558	0.0739039	EOMES.p2	AK040697|Serpinb12|71869|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	AK014669|Serpinb12|71869|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	BC062134|Serpinb12|71869|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12
mm9_v1_chr11_-_70034477_70034547	0.0728063	EOMES.p2	AK028143|Slc16a13|69309|solute carrier family 16 (monocarboxylic acid transporters), member 13	AK028759|Slc16a13|69309|solute carrier family 16 (monocarboxylic acid transporters), member 13	NM_172371|Slc16a13|69309|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm9_v1_chr7_+_29526999_29527026	0.0720635	EOMES.p2	AK010491|Sars2|71984|seryl-aminoacyl-tRNA synthetase 2	BC079664|Sars2|71984|seryl-aminoacyl-tRNA synthetase 2	NM_023637|Sars2|71984|seryl-aminoacyl-tRNA synthetase 2	AB029949|Sars2|71984|seryl-aminoacyl-tRNA synthetase 2	AK087606|Sars2|71984|seryl-aminoacyl-tRNA synthetase 2	AK140760|Sars2|71984|seryl-aminoacyl-tRNA synthetase 2	AK135222|Sars2|71984|seryl-aminoacyl-tRNA synthetase 2
mm9_v1_chr19_+_5568045_5568150	0.0720196	EOMES.p2	AK144121|Gm962|381201|predicted gene 962	NM_001033448|Gm962|381201|predicted gene 962	BC147482|Gm962|381201|predicted gene 962
mm9_v1_chr15_+_96117952_96118007	0.0719285	EOMES.p2	AK007269|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)	NM_175251|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)
mm9_v1_chr17_-_28502087_28502126	0.0707503	EOMES.p2	NM_021478|Tulp1|22157|tubby like protein 1	BC014820|Tulp1|22157|tubby like protein 1	BC029222|Tulp1|22157|tubby like protein 1
mm9_v1_chr8_-_28313004_28313018	0.0701152	EOMES.p2	AK006984|Got1l1|76615|glutamic-oxaloacetic transaminase 1-like 1	BC052754|Got1l1|76615|glutamic-oxaloacetic transaminase 1-like 1	NM_029674|Got1l1|76615|glutamic-oxaloacetic transaminase 1-like 1
mm9_v1_chr7_+_56044372_56044374	0.065275	EOMES.p2	AK010382|Zdhhc13|243983|zinc finger, DHHC domain containing 13	NM_028031|Zdhhc13|243983|zinc finger, DHHC domain containing 13
mm9_v1_chr9_-_50369372_50369429	0.0648571	EOMES.p2	BC048458|Tex12|66654|testis expressed gene 12	NM_025687|Tex12|66654|testis expressed gene 12	AK006285|Tex12|66654|testis expressed gene 12	AF285582|Tex12|66654|testis expressed gene 12	AK017776|Tex12|66654|testis expressed gene 12	BC061081|Tex12|66654|testis expressed gene 12	AK014896|Tex12|66654|testis expressed gene 12
mm9_v1_chr2_+_103264278_103264282	0.0640488	EOMES.p2	BC012424|Elf5|13711|E74-like factor 5	BC021629|Elf5|13711|E74-like factor 5
mm9_v1_chr10_-_79446784_79446797	0.0635504	EOMES.p2	AY096036|ORF61|216157|open reading frame 61	AY096037|ORF61|216157|open reading frame 61
mm9_v1_chr5_+_31014229_31014273	0.0626207	EOMES.p2	AK044866|Dpysl5|65254|dihydropyrimidinase-like 5	BC065054|Dpysl5|65254|dihydropyrimidinase-like 5	NM_023047|Dpysl5|65254|dihydropyrimidinase-like 5	BC103789|Dpysl5|65254|dihydropyrimidinase-like 5
mm9_v1_chr7_+_14318874_14318888	0.0625796	EOMES.p2	BC125365|Sult2a2|100043194|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 2	BC125367|Sult2a2|100043194|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 2	L27121|Sult2a2|100043194|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 2
mm9_v1_chr18_+_38456364_38456458	0.062319	EOMES.p2	AK011316|Rnf14|56736|ring finger protein 14	BC049079|Rnf14|56736|ring finger protein 14	NM_001164621|Rnf14|56736|ring finger protein 14
mm9_v1_chr10_+_61155390_61155586	0.0614677	EOMES.p2	AK003538|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)
mm9_v1_chr14_-_59761715_59761729	0.0604309	EOMES.p2	AK015075|1700129C05Rik|67932|RIKEN cDNA 1700129C05 gene	AK006084|1700129C05Rik|67932|RIKEN cDNA 1700129C05 gene	AK007313|1700129C05Rik|67932|RIKEN cDNA 1700129C05 gene	BC049552|1700129C05Rik|67932|RIKEN cDNA 1700129C05 gene	NM_026461|1700129C05Rik|67932|RIKEN cDNA 1700129C05 gene
mm9_v1_chr17_-_34976745_34976778	0.0602679	EOMES.p2	AK181557|Skiv2l|108077|superkiller viralicidic activity 2-like (S. cerevisiae)
mm9_v1_chr17_-_29484429_29484756	0.0602579	EOMES.p2	AK193036|Mtch1|56462|mitochondrial carrier homolog 1 (C. elegans)	AK217430|Mtch1|56462|mitochondrial carrier homolog 1 (C. elegans)	BC023135|Mtch1|56462|mitochondrial carrier homolog 1 (C. elegans)	BC027274|Mtch1|56462|mitochondrial carrier homolog 1 (C. elegans)	AK154010|Mtch1|56462|mitochondrial carrier homolog 1 (C. elegans)	AK009623|Mtch1|56462|mitochondrial carrier homolog 1 (C. elegans)
mm9_v1_chr5_+_124566251_124566301	0.0592932	EOMES.p2	AK133934|Arl6ip4|65105|ADP-ribosylation factor-like 6 interacting protein 4
mm9_v1_chr7_+_51443605_51443632	0.058973	EOMES.p2	BC146015|Klk1b24|16617|kallikrein 1-related peptidase b24	BC146019|Klk1b24|16617|kallikrein 1-related peptidase b24	AB039277|Klk1b24|16617|kallikrein 1-related peptidase b24	NM_010643|Klk1b24|16617|kallikrein 1-related peptidase b24
mm9_v1_chr3_-_130412297_130412356	0.0586925	EOMES.p2	AK011085|Ostc|66357|oligosaccharyltransferase complex subunit	AK017845|Ostc|66357|oligosaccharyltransferase complex subunit	AK135332|Ostc|66357|oligosaccharyltransferase complex subunit	AK013011|Ostc|66357|oligosaccharyltransferase complex subunit	AK032969|Ostc|66357|oligosaccharyltransferase complex subunit	AK009237|Ostc|66357|oligosaccharyltransferase complex subunit	BC014799|Ostc|66357|oligosaccharyltransferase complex subunit	BC021935|Ostc|66357|oligosaccharyltransferase complex subunit
mm9_v1_chr8_+_70047752_70047752	0.057965	EOMES.p2	AK077364|Nat3|17962|N-acetyltransferase 3	NM_008674|Nat3|17962|N-acetyltransferase 3
mm9_v1_chrX_-_25972690_25972690	0.0579351	EOMES.p2	NM_001136476|Slx|664829|Sycp3 like X-linked
mm9_v1_chr14_-_56143799_56143817	0.0554135	EOMES.p2	AK044316|Nrl|18185|neural retina leucine zipper gene	BC031440|Nrl|18185|neural retina leucine zipper gene	NM_001136074|Nrl|18185|neural retina leucine zipper gene	AK044244|Nrl|18185|neural retina leucine zipper gene
mm9_v1_chr18_-_6135924_6136095	0.0553175	EOMES.p2	AK031648|Arhgap12|75415|Rho GTPase activating protein 12	AK012717|Arhgap12|75415|Rho GTPase activating protein 12	AK077063|Arhgap12|75415|Rho GTPase activating protein 12	NM_001039692|Arhgap12|75415|Rho GTPase activating protein 12	NM_029277|Arhgap12|75415|Rho GTPase activating protein 12
mm9_v1_chr9_+_120040542_120040587	0.0552364	EOMES.p2	
mm9_v1_chr3_-_90894726_90894726	0.0546791	EOMES.p2	AK078932|9130204L05Rik|229550|RIKEN cDNA 9130204L05 gene	NM_001101461|9130204L05Rik|229550|RIKEN cDNA 9130204L05 gene
mm9_v1_chr18_+_32975036_32975036	0.0545697	EOMES.p2	AF232937|Tslp|53603|thymic stromal lymphopoietin	BC130230|Tslp|53603|thymic stromal lymphopoietin	NM_021367|Tslp|53603|thymic stromal lymphopoietin
mm9_v1_chrX_-_109520387_109520387	0.0544117	EOMES.p2	BC138009|Satl1|73809|spermidine/spermine N1-acetyl transferase-like 1	BC138011|Satl1|73809|spermidine/spermine N1-acetyl transferase-like 1	NM_028655|Satl1|73809|spermidine/spermine N1-acetyl transferase-like 1
mm9_v1_chr10_-_80005514_80005572	0.0534439	EOMES.p2	AK196365|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)
mm9_v1_chr3_-_88265103_88265103	0.051592	EOMES.p2	NM_001163489|Sema4a|20351|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	X85991|Sema4a|20351|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm9_v1_chr13_+_67964262_67964324	0.0507111	EOMES.p2	AK133011|BC048507|408058|cDNA sequence BC048507	BC048507|BC048507|408058|cDNA sequence BC048507	NM_001001185|BC048507|408058|cDNA sequence BC048507
mm9_v1_chr9_-_48772926_48773094	0.0496975	EOMES.p2	AF155045|Htr3b|57014|5-hydroxytryptamine (serotonin) receptor 3B	BC046990|Htr3b|57014|5-hydroxytryptamine (serotonin) receptor 3B	AK085213|Htr3b|57014|5-hydroxytryptamine (serotonin) receptor 3B	NM_020274|Htr3b|57014|5-hydroxytryptamine (serotonin) receptor 3B
mm9_v1_chr12_-_115526405_115526850	0.0487534	EOMES.p2	X03378|LOC432699|432699|VH gene product	X03379|Igh-2|238447|immunoglobulin heavy chain 2 (serum IgA)	AK142609|Igh-VJ558|16061|immunoglobulin heavy chain (J558 family)
mm9_v1_chr16_+_13265171_13265171	0.0485856	EOMES.p2	BC028459|Mkl2|239719|MKL/myocardin-like 2	NM_181860|Mkl2|239719|MKL/myocardin-like 2
mm9_v1_chr9_+_43901941_43901990	0.0478185	EOMES.p2	AK047204|Usp2|53376|ubiquitin specific peptidase 2	AK081112|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr9_-_37519864_37519864	0.0474823	EOMES.p2	BC130240|Olfr160|80706|olfactory receptor 160	NM_030553|Olfr160|80706|olfactory receptor 160
mm9_v1_chr1_+_135206360_135206408	0.0471692	EOMES.p2	AY707855|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)	BC024448|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)	AK002581|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)	AK141378|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)	NM_026680|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)
mm9_v1_chr1_+_174012909_174013066	0.046407	EOMES.p2	AK171625|Copa|12847|coatomer protein complex subunit alpha	AK043479|Copa|12847|coatomer protein complex subunit alpha	AK164910|Copa|12847|coatomer protein complex subunit alpha	BC047429|Copa|12847|coatomer protein complex subunit alpha	BC024070|Copa|12847|coatomer protein complex subunit alpha	AF248032|Copa|12847|coatomer protein complex subunit alpha
mm9_v1_chr14_+_31292797_31292864	0.0460459	EOMES.p2	BC066173|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)	AK047460|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)	AK171707|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)
mm9_v1_chr4_-_12015073_12015153	0.0460118	EOMES.p2	AK017238|Tmem67|329795|transmembrane protein 67	AK039177|Tmem67|329795|transmembrane protein 67	AK042835|Tmem67|329795|transmembrane protein 67	AK133059|Tmem67|329795|transmembrane protein 67	AK045429|Tmem67|329795|transmembrane protein 67	NM_177861|Tmem67|329795|transmembrane protein 67	AK077246|Tmem67|329795|transmembrane protein 67
mm9_v1_chr3_-_130432210_130432221	0.0457238	EOMES.p2	BC028517|Rpl34|68436|ribosomal protein L34	BC082285|Rpl34-ps1|619547|ribosomal protein L34, pseudogene 1	NM_001005859|Rpl34|68436|ribosomal protein L34
mm9_v1_chr1_-_162083624_162083705	0.045463	EOMES.p2	AJ580920|Tnn|329278|tenascin N	BC138335|Tnn|329278|tenascin N	BC138336|Tnn|329278|tenascin N	AF455756|Tnn|329278|tenascin N	NM_177839|Tnn|329278|tenascin N
mm9_v1_chr18_+_38456280_38456312	0.0453611	EOMES.p2	NM_001164622|Rnf14|56736|ring finger protein 14	NM_020012|Rnf14|56736|ring finger protein 14
mm9_v1_chr9_-_88626434_88626600	0.0444402	EOMES.p2	AK165576|Bcl2a1d|12047|B-cell leukemia/lymphoma 2 related protein A1d	BC027536|Bcl2a1d|12047|B-cell leukemia/lymphoma 2 related protein A1d
mm9_v1_chr7_-_3867085_3867115	0.0436925	EOMES.p2	BC119598|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	NM_011087|Pira1|18722|paired-Ig-like receptor A1	U96682|Pira1|18722|paired-Ig-like receptor A1	BC127613|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	BC128500|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	U96684|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	AK152898|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	NM_011090|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	AK030846|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	AK054162|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6
mm9_v1_chr3_-_94812818_94812845	0.0432383	EOMES.p2	BC039950|Zfp687|78266|zinc finger protein 687	BC036979|Zfp687|78266|zinc finger protein 687
mm9_v1_chr8_-_96059606_96059606	0.0411518	EOMES.p2	AB186393|Ces5a|67935|carboxylesterase 5A	NM_001003951|Ces5a|67935|carboxylesterase 5A
mm9_v1_chr19_+_40905768_40905801	0.0410686	EOMES.p2	AK052506|Ccnj|240665|cyclin J	NM_172839|Ccnj|240665|cyclin J	AK157841|Ccnj|240665|cyclin J	BC120921|Ccnj|240665|cyclin J	BC120922|Ccnj|240665|cyclin J	BC117559|Ccnj|240665|cyclin J
mm9_v1_chr4_-_133523750_133523927	0.0400313	EOMES.p2	X12944|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC084680|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC090837|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC092060|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC083085|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC090836|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC103792|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK078413|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK002374|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK151383|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK152857|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK153881|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK169050|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK146285|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK146999|Hmgn2|15331|high mobility group nucleosomal binding domain 2	NM_016957|Hmgn2|15331|high mobility group nucleosomal binding domain 2
mm9_v1_chr7_+_52897090_52897145	0.0395304	EOMES.p2	AK052976|Mamstr|74490|MEF2 activating motif and SAP domain containing transcriptional regulator	AK036109|Mamstr|74490|MEF2 activating motif and SAP domain containing transcriptional regulator
mm9_v1_chr6_-_145813859_145813899	0.0389853	EOMES.p2	AB044090|Bhlhe41|79362|basic helix-loop-helix family, member e41	NM_024469|Bhlhe41|79362|basic helix-loop-helix family, member e41	BC023231|Bhlhe41|79362|basic helix-loop-helix family, member e41	BC051555|Bhlhe41|79362|basic helix-loop-helix family, member e41	BC037742|Bhlhe41|79362|basic helix-loop-helix family, member e41
mm9_v1_chr2_+_3035692_3035956	0.0385239	EOMES.p2	BC138175|Fam171a1|269233|family with sequence similarity 171, member A1	BC145171|Fam171a1|269233|family with sequence similarity 171, member A1	AK077831|Fam171a1|269233|family with sequence similarity 171, member A1
mm9_v1_chr6_-_139989932_139989951	0.03819	EOMES.p2	BC106767|Plcz1|114875|phospholipase C, zeta 1	BC106768|Plcz1|114875|phospholipase C, zeta 1	AF435950|Plcz1|114875|phospholipase C, zeta 1	NM_054066|Plcz1|114875|phospholipase C, zeta 1	AK005949|Plcz1|114875|phospholipase C, zeta 1	AK006672|Plcz1|114875|phospholipase C, zeta 1
mm9_v1_chrX_-_92640149_92640178	0.0378622	EOMES.p2	BC053442|Fam123b|72345|family with sequence similarity 123, member B	AK012651|Fam123b|72345|family with sequence similarity 123, member B	AK049774|Fam123b|72345|family with sequence similarity 123, member B	NM_175179|Fam123b|72345|family with sequence similarity 123, member B
mm9_v1_chr11_+_109334649_109334687	0.0362232	EOMES.p2	AK158726|Arsg|74008|arylsulfatase G	NM_028710|Arsg|74008|arylsulfatase G
mm9_v1_chr5_-_23897960_23897960	0.0348526	EOMES.p2	AY495541|Atg9b|213948|ATG9 autophagy related 9 homolog B (S. cerevisiae)	AY515313|Atg9b|213948|ATG9 autophagy related 9 homolog B (S. cerevisiae)	NM_001002897|Atg9b|213948|ATG9 autophagy related 9 homolog B (S. cerevisiae)
mm9_v1_chr14_-_55725370_55725429	0.0332322	EOMES.p2	AK052384|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit	BC080798|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit	BC108374|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit	AK151844|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit	AK147177|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit	NM_007455|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit
mm9_v1_chr11_+_95275577_95275627	0.0328285	EOMES.p2	BC043131|Spop|20747|speckle-type POZ protein
mm9_v1_chr17_-_32326407_32326493	0.0324061	EOMES.p2	AK132483|Ephx3|71932|epoxide hydrolase 3	NM_001033163|Ephx3|71932|epoxide hydrolase 3	AK010021|Ephx3|71932|epoxide hydrolase 3	BC145797|Ephx3|71932|epoxide hydrolase 3
mm9_v1_chr5_+_147762106_147762155	0.0321936	EOMES.p2	BC032292|Gtf3a|66596|general transcription factor III A
mm9_v1_chr3_+_89908053_89908055	0.032032	EOMES.p2	NM_029937|Nup210l|77595|nucleoporin 210-like	AK019752|Nup210l|77595|nucleoporin 210-like
mm9_v1_chr5_-_76792766_76792812	0.0314358	EOMES.p2	BC125545|Nmu|56183|neuromedin U	BC138071|Nmu|56183|neuromedin U	BC145135|Nmu|56183|neuromedin U	AF203444|Nmu|56183|neuromedin U	NM_019515|Nmu|56183|neuromedin U	AK077478|Nmu|56183|neuromedin U
mm9_v1_chr12_-_36219651_36219745	0.0311822	EOMES.p2	AK153678|Ahr|11622|aryl-hydrocarbon receptor	NM_013464|Ahr|11622|aryl-hydrocarbon receptor	AK155380|Ahr|11622|aryl-hydrocarbon receptor
mm9_v1_chr15_-_75893123_75893176	0.0309764	EOMES.p2	BC006859|Scrib|105782|scribbled homolog (Drosophila)
mm9_v1_chr17_+_56301980_56301995	0.0302799	EOMES.p2	AK004949|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1	BC032199|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1
mm9_v1_chr11_-_76577079_76577091	0.0274624	EOMES.p2	AK147799|Gosr1|53334|golgi SNAP receptor complex member 1	AK154972|Gosr1|53334|golgi SNAP receptor complex member 1
mm9_v1_chr2_-_85359091_85359185	0.0271728	EOMES.p2	BC120879|4833423E24Rik|228151|RIKEN cDNA 4833423E24 gene	NM_001081664|4833423E24Rik|228151|RIKEN cDNA 4833423E24 gene	AK076485|4833423E24Rik|228151|RIKEN cDNA 4833423E24 gene
mm9_v1_chr7_+_86956134_86956146	0.0258193	EOMES.p2	AK146740|Mesp2|17293|mesoderm posterior 2
mm9_v1_chr4_-_82698070_82698070	0.0257145	EOMES.p2	AB160986|Frem1|329872|Fras1 related extracellular matrix protein 1	NM_001198811|Frem1|329872|Fras1 related extracellular matrix protein 1
mm9_v1_chr9_-_119118203_119118222	0.0256768	EOMES.p2	BC021449|Slc22a13|102570|solute carrier family 22 (organic cation transporter), member 13	AF529220|Slc22a13|102570|solute carrier family 22 (organic cation transporter), member 13	NM_133980|Slc22a13|102570|solute carrier family 22 (organic cation transporter), member 13
mm9_v1_chr11_-_97141651_97141696	0.0255591	EOMES.p2	AK133898|Npepps|19155|aminopeptidase puromycin sensitive
mm9_v1_chr2_-_26150076_26150076	0.025441	EOMES.p2	AK077032|4932418E24Rik|329366|RIKEN cDNA 4932418E24 gene	NM_177841|4932418E24Rik|329366|RIKEN cDNA 4932418E24 gene
mm9_v1_chr19_+_46781921_46781932	0.0227183	EOMES.p2	NM_020577|As3mt|57344|arsenic (+3 oxidation state) methyltransferase
mm9_v1_chr13_-_117099629_117099895	0.021197	EOMES.p2	AB104633|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AJ132765|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132609|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK044406|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK090263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK143052|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	NM_021459|Isl1|16392|ISL1 transcription factor, LIM/homeodomain
mm9_v1_chr8_-_114378162_114378252	0.0164838	EOMES.p2	AK160532|Cfdp1|23837|craniofacial development protein 1	BC005589|Cfdp1|23837|craniofacial development protein 1	AB010828|Cfdp1|23837|craniofacial development protein 1	NM_011801|Cfdp1|23837|craniofacial development protein 1	Y08219|Cfdp1|23837|craniofacial development protein 1	AK133989|Cfdp1|23837|craniofacial development protein 1
mm9_v1_chr11_-_74710562_74710581	0.0158667	EOMES.p2	BC058414|Sgsm2|97761|small G protein signaling modulator 2	BC060163|Sgsm2|97761|small G protein signaling modulator 2	NM_197943|Sgsm2|97761|small G protein signaling modulator 2
mm9_v1_chr7_-_3796619_3796646	0.0157696	EOMES.p2	U96683|Pira2|18725|paired-Ig-like receptor A2	AF288356|Lilrb3|18733|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3	U96682|Pira1|18722|paired-Ig-like receptor A1	BC026937|Lilrb3|18733|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3
mm9_v1_chr14_+_73952438_73952612	0.0154733	EOMES.p2	AK016060|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK081965|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK088801|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK150594|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK152783|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK160130|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	NM_011506|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK153198|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	BC056353|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	BC057605|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK132762|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK160652|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK005273|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit
mm9_v1_chr16_-_92826307_92826318	0.0153769	EOMES.p2	AK165307|Runx1|12394|runt related transcription factor 1	AK145098|Runx1|12394|runt related transcription factor 1	NM_001111021|Runx1|12394|runt related transcription factor 1	NM_001111022|Runx1|12394|runt related transcription factor 1	AK040240|Runx1|12394|runt related transcription factor 1
mm9_v1_chr9_+_108362848_108362907	0.01514	EOMES.p2	NM_133744|Ccdc71|72454|coiled-coil domain containing 71	AK085544|Ccdc71|72454|coiled-coil domain containing 71	AK079333|Ccdc71|72454|coiled-coil domain containing 71	AK011229|Ccdc71|72454|coiled-coil domain containing 71	AK044601|Ccdc71|72454|coiled-coil domain containing 71	AK086560|Ccdc71|72454|coiled-coil domain containing 71	AK149878|Ccdc71|72454|coiled-coil domain containing 71	AK136982|Ccdc71|72454|coiled-coil domain containing 71	BC018518|Ccdc71|72454|coiled-coil domain containing 71
mm9_v1_chr4_-_59927860_59927927	0.0142249	EOMES.p2	BC140962|Slc46a2|30936|solute carrier family 46, member 2	AF148145|Slc46a2|30936|solute carrier family 46, member 2	AK014784|Slc46a2|30936|solute carrier family 46, member 2	AK017363|Slc46a2|30936|solute carrier family 46, member 2	AK040063|Slc46a2|30936|solute carrier family 46, member 2	NM_021053|Slc46a2|30936|solute carrier family 46, member 2
mm9_v1_chr2_-_164008333_164008477	0.0134969	EOMES.p2	AK075896|Wfdc5|209232|WAP four-disulfide core domain 5	AK131906|Wfdc5|209232|WAP four-disulfide core domain 5	AK131905|Wfdc5|209232|WAP four-disulfide core domain 5	AY669505|Wfdc5|209232|WAP four-disulfide core domain 5	BC019734|Wfdc5|209232|WAP four-disulfide core domain 5	NM_145369|Wfdc5|209232|WAP four-disulfide core domain 5
mm9_v1_chr6_-_99216494_99216530	0.0130474	EOMES.p2	BC064764|Foxp1|108655|forkhead box P1	AK171994|Foxp1|108655|forkhead box P1	BC065386|Foxp1|108655|forkhead box P1	NM_001197321|Foxp1|108655|forkhead box P1	AK040800|Foxp1|108655|forkhead box P1
mm9_v1_chr1_+_187251960_187252031	0.0127104	EOMES.p2	AK166460|Eprs|107508|glutamyl-prolyl-tRNA synthetase
mm9_v1_chr2_-_10001995_10002147	0.0105357	EOMES.p2	BC055785|Atp5c1|11949|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	AK088164|Atp5c1|11949|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	BC010700|Atp5c1|11949|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	D21073|Atp5c1|11949|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	AK146434|Atp5c1|11949|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	AK007063|Atp5c1|11949|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	AK150307|Atp5c1|11949|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	BC048777|Atp5c1|11949|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	AK158675|Atp5c1|11949|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	NM_001112738|Atp5c1|11949|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	NM_020615|Atp5c1|11949|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
mm9_v1_chr16_-_38341927_38341945	0.0103031	EOMES.p2	AK077038|4932425I24Rik|320214|RIKEN cDNA 4932425I24 gene	NM_001081025|4932425I24Rik|320214|RIKEN cDNA 4932425I24 gene
mm9_v1_chr17_+_74738195_74738352	0.00996097	EOMES.p2	BC046286|Spast|50850|spastin	NM_001162870|Spast|50850|spastin	NM_016962|Spast|50850|spastin	AK129282|Spast|50850|spastin
mm9_v1_chr3_+_51219971_51220063	0.00929502	EOMES.p2	AF510858|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit	BC050017|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm9_v1_chrX_-_99700697_99700735	0.00902249	EOMES.p2	AK131998|Hdac8|70315|histone deacetylase 8
mm9_v1_chr18_+_10325174_10325177	0.00863199	EOMES.p2	AK142556|Greb1l|381157|growth regulation by estrogen in breast cancer-like	NM_001083628|Greb1l|381157|growth regulation by estrogen in breast cancer-like
mm9_v1_chr6_+_139789965_139790178	0.00763596	EOMES.p2	AB008792|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	NM_011084|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	AK054415|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	AK054271|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	AK054266|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	BC061142|Pik3c2g|18705|phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide
mm9_v1_chrX_-_18038399_18038522	0.00624975	EOMES.p2	AK085770|4930578C19Rik|75905|RIKEN cDNA 4930578C19 gene	BC118515|4930578C19Rik|75905|RIKEN cDNA 4930578C19 gene	NM_175228|4930578C19Rik|75905|RIKEN cDNA 4930578C19 gene	AK016298|4930578C19Rik|75905|RIKEN cDNA 4930578C19 gene	AK163928|4930578C19Rik|75905|RIKEN cDNA 4930578C19 gene
mm9_v1_chr15_-_54751515_54751700	0.00237341	EOMES.p2	EU131009|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	EU131010|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	NM_001136077|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	BC003264|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	AF123542|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	AK088491|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	AK161144|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	AK163881|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	BC058759|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	AK038940|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	NM_015744|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2
mm9_v1_chr4_+_102664399_102664426	0.00197772	EOMES.p2	NM_001163768|Tctex1d1|67344|Tctex1 domain containing 1	AK040270|Tctex1d1|67344|Tctex1 domain containing 1
mm9_v1_chr8_+_9977802_9977903	0.00185735	EOMES.p2	AK044407|Abhd13|68904|abhydrolase domain containing 13	BC043690|Abhd13|68904|abhydrolase domain containing 13
mm9_v1_chr6_+_5333385_5333385	0.00159475	EOMES.p2	BC046819|Asb4|65255|ankyrin repeat and SOCS box-containing 4	BC056440|Asb4|65255|ankyrin repeat and SOCS box-containing 4	NM_023048|Asb4|65255|ankyrin repeat and SOCS box-containing 4
mm9_v1_chr7_-_53927906_53927906	0.000668021	EOMES.p2	BC072582|Tph1|21990|tryptophan hydroxylase 1	NM_009414|Tph1|21990|tryptophan hydroxylase 1
mm9_v1_chr7_+_134655496_134655584	0.000424629	EOMES.p2	AK142089|Srcap|100043597|Snf2-related CREBBP activator protein	AK169954|Srcap|100043597|Snf2-related CREBBP activator protein	AK051146|Srcap|100043597|Snf2-related CREBBP activator protein	BC085144|Srcap|100043597|Snf2-related CREBBP activator protein
mm9_v1_chr10_-_80664743_80664795	0.000162262	EOMES.p2	BC119244|Itgb1bp3|69564|integrin beta 1 binding protein 3	BC119246|Itgb1bp3|69564|integrin beta 1 binding protein 3	AK137483|Itgb1bp3|69564|integrin beta 1 binding protein 3	NM_027120|Itgb1bp3|69564|integrin beta 1 binding protein 3	AK009352|Itgb1bp3|69564|integrin beta 1 binding protein 3
mm9_v1_chr13_-_38128805_38129027	0.000138794	EOMES.p2	AK016953|Cage1|71213|cancer antigen 1	NM_027724|Cage1|71213|cancer antigen 1	BC082568|Cage1|71213|cancer antigen 1	AK089301|Cage1|71213|cancer antigen 1
