mm9_v1_chr1_-_97564139_97564174	9.3764	FOXN1.p2	BC060112|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	AJ223956|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_001159745|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_009183|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	X86000|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm9_v1_chr9_-_40965548_40965649	7.85037	FOXN1.p2	BC053436|Ubash3b|72828|ubiquitin associated and SH3 domain containing, B	AB075602|Ubash3b|72828|ubiquitin associated and SH3 domain containing, B	AK172288|Ubash3b|72828|ubiquitin associated and SH3 domain containing, B	AK133948|Ubash3b|72828|ubiquitin associated and SH3 domain containing, B	AK035764|Ubash3b|72828|ubiquitin associated and SH3 domain containing, B	NM_176860|Ubash3b|72828|ubiquitin associated and SH3 domain containing, B
mm9_v1_chr9_-_75531734_75531890	7.70555	FOXN1.p2	AK158315|Scg3|20255|secretogranin III	AK133655|Scg3|20255|secretogranin III	AK139140|Scg3|20255|secretogranin III	AK164089|Scg3|20255|secretogranin III	BC024785|Scg3|20255|secretogranin III	U02982|Scg3|20255|secretogranin III	AK148498|Scg3|20255|secretogranin III	NM_001164790|Scg3|20255|secretogranin III	NM_009130|Scg3|20255|secretogranin III
mm9_v1_chr7_-_116925058_116925063	6.85385	FOXN1.p2	AK020731|Nrip3|78593|nuclear receptor interacting protein 3	AK083130|Nrip3|78593|nuclear receptor interacting protein 3	NM_020610|Nrip3|78593|nuclear receptor interacting protein 3
mm9_v1_chr1_-_97564064_97564129	6.57037	FOXN1.p2	AK041723|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	AK003690|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm9_v1_chr8_-_87502592_87502646	6.54183	FOXN1.p2	X54332|Junb|16477|Jun-B oncogene	BC092302|Junb|16477|Jun-B oncogene	BC003790|Junb|16477|Jun-B oncogene	AK155043|Junb|16477|Jun-B oncogene	AK150286|Junb|16477|Jun-B oncogene	AK156596|Junb|16477|Jun-B oncogene	AK159140|Junb|16477|Jun-B oncogene	AK159661|Junb|16477|Jun-B oncogene	AK088643|Junb|16477|Jun-B oncogene	AK141592|Junb|16477|Jun-B oncogene	AK144871|Junb|16477|Jun-B oncogene	AK145550|Junb|16477|Jun-B oncogene	AK149794|Junb|16477|Jun-B oncogene	AK150111|Junb|16477|Jun-B oncogene	AK150247|Junb|16477|Jun-B oncogene	AK159083|Junb|16477|Jun-B oncogene	AK159520|Junb|16477|Jun-B oncogene	AK160066|Junb|16477|Jun-B oncogene	NM_008416|Junb|16477|Jun-B oncogene	J03236|Junb|16477|Jun-B oncogene
mm9_v1_chr6_+_49772688_49772727	6.02154	FOXN1.p2	AK002982|Npy|109648|neuropeptide Y	BC043012|Npy|109648|neuropeptide Y	NM_023456|Npy|109648|neuropeptide Y
mm9_v1_chr15_-_27611236_27611348	5.68208	FOXN1.p2	AK160030|Fam105a|223433|family with sequence similarity 105, member A	AK172362|Fam105a|223433|family with sequence similarity 105, member A	BC052328|Fam105a|223433|family with sequence similarity 105, member A	NM_198301|Fam105a|223433|family with sequence similarity 105, member A	AK152590|Fam105a|223433|family with sequence similarity 105, member A	AK150760|Fam105a|223433|family with sequence similarity 105, member A	AK152120|Fam105a|223433|family with sequence similarity 105, member A	AK036522|Fam105a|223433|family with sequence similarity 105, member A
mm9_v1_chr11_-_50024275_50024312	5.65078	FOXN1.p2	U57413|Sqstm1|18412|sequestosome 1	NM_011018|Sqstm1|18412|sequestosome 1	U40930|Sqstm1|18412|sequestosome 1
mm9_v1_chr2_+_177876858_177876930	5.59159	FOXN1.p2	BC059869|Phactr3|74189|phosphatase and actin regulator 3	AK032242|Phactr3|74189|phosphatase and actin regulator 3	AY501387|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr10_-_126700105_126700237	5.47201	FOXN1.p2	AF067179|Kif5a|16572|kinesin family member 5A	AK147660|Kif5a|16572|kinesin family member 5A	BC058396|Kif5a|16572|kinesin family member 5A	AK147707|Kif5a|16572|kinesin family member 5A	BC027115|Kif5a|16572|kinesin family member 5A	AK147352|Kif5a|16572|kinesin family member 5A
mm9_v1_chr14_+_112074336_112074336	5.30396	FOXN1.p2	NM_198865|Slitrk5|75409|SLIT and NTRK-like family, member 5
mm9_v1_chr2_-_163470787_163470825	5.15735	FOXN1.p2	AB029499|Serinc3|26943|serine incorporator 3	AF181684|Serinc3|26943|serine incorporator 3	BC022901|Serinc3|26943|serine incorporator 3	AK170350|Serinc3|26943|serine incorporator 3	AK152720|Serinc3|26943|serine incorporator 3	AK159347|Serinc3|26943|serine incorporator 3	AK150106|Serinc3|26943|serine incorporator 3	AK155921|Serinc3|26943|serine incorporator 3	AK159488|Serinc3|26943|serine incorporator 3	AK159819|Serinc3|26943|serine incorporator 3	AK160005|Serinc3|26943|serine incorporator 3	AK160055|Serinc3|26943|serine incorporator 3	AK161981|Serinc3|26943|serine incorporator 3	AK164807|Serinc3|26943|serine incorporator 3	AK166924|Serinc3|26943|serine incorporator 3	AK145604|Serinc3|26943|serine incorporator 3
mm9_v1_chr2_-_163470826_163470836	4.9769	FOXN1.p2	BC011295|Serinc3|26943|serine incorporator 3
mm9_v1_chr9_-_35365985_35366129	4.83815	FOXN1.p2	AF142630|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	BC024852|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	BC061130|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	AK078340|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	AK050693|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	NM_013932|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25
mm9_v1_chr1_+_97210162_97210393	4.76813	FOXN1.p2	BC021428|Fam174a|67698|family with sequence similarity 174, member A	AK084861|Fam174a|67698|family with sequence similarity 174, member A	NM_026321|Fam174a|67698|family with sequence similarity 174, member A	AK009797|Fam174a|67698|family with sequence similarity 174, member A	AK017318|Fam174a|67698|family with sequence similarity 174, member A	AK009892|Fam174a|67698|family with sequence similarity 174, member A	AK020633|Fam174a|67698|family with sequence similarity 174, member A	AK148807|Fam174a|67698|family with sequence similarity 174, member A	AK033948|Fam174a|67698|family with sequence similarity 174, member A	AB154249|Fam174a|67698|family with sequence similarity 174, member A
mm9_v1_chr1_-_94998418_94998474	4.58344	FOXN1.p2	BC045161|Kif1a|16560|kinesin family member 1A	BC054538|Kif1a|16560|kinesin family member 1A	BC062891|Kif1a|16560|kinesin family member 1A	NM_001110315|Kif1a|16560|kinesin family member 1A	NM_008440|Kif1a|16560|kinesin family member 1A
mm9_v1_chr2_-_144353133_144353142	4.41932	FOXN1.p2	AK032182|6330439K17Rik|241688|RIKEN cDNA 6330439K17 gene	NM_172859|6330439K17Rik|241688|RIKEN cDNA 6330439K17 gene
mm9_v1_chr10_-_115910578_115910595	4.31303	FOXN1.p2	AF215892|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4	BC117779|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4	NM_021452|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4	BC048471|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4
mm9_v1_chr9_+_27598853_27598893	4.14862	FOXN1.p2	BC076581|Opcml|330908|opioid binding protein/cell adhesion molecule-like	NM_177906|Opcml|330908|opioid binding protein/cell adhesion molecule-like	AK013792|Opcml|330908|opioid binding protein/cell adhesion molecule-like
mm9_v1_chr5_-_121161612_121161643	4.13738	FOXN1.p2	AK088630|Dtx1|14357|deltex 1 homolog (Drosophila)
mm9_v1_chr14_+_115491436_115491496	4.09275	FOXN1.p2	AK134807|Gpc5|103978|glypican 5	NM_175500|Gpc5|103978|glypican 5	AK038547|Gpc5|103978|glypican 5	AK084223|Gpc5|103978|glypican 5
mm9_v1_chr17_-_30713105_30713132	3.93397	FOXN1.p2	BC057897|Btbd9|224671|BTB (POZ) domain containing 9	AK052664|Btbd9|224671|BTB (POZ) domain containing 9	AK087881|Btbd9|224671|BTB (POZ) domain containing 9
mm9_v1_chr8_+_11728104_11728202	3.91057	FOXN1.p2	NM_001113517|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK129064|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK139156|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)
mm9_v1_chr13_+_76522408_76522408	3.89501	FOXN1.p2	AK047562|Mctp1|78771|multiple C2 domains, transmembrane 1	NM_030174|Mctp1|78771|multiple C2 domains, transmembrane 1
mm9_v1_chr10_+_80599187_80599216	3.79623	FOXN1.p2	BC138524|Zbtb7a|16969|zinc finger and BTB domain containing 7a	BC145311|Zbtb7a|16969|zinc finger and BTB domain containing 7a	BC171957|Zbtb7a|16969|zinc finger and BTB domain containing 7a
mm9_v1_chr1_-_94998392_94998412	3.78535	FOXN1.p2	AK138237|Kif1a|16560|kinesin family member 1A	BC034863|Kif1a|16560|kinesin family member 1A	D29951|Kif1a|16560|kinesin family member 1A	AK147640|Kif1a|16560|kinesin family member 1A
mm9_v1_chr10_+_87841876_87842156	3.75836	FOXN1.p2	BC060638|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	AK140867|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	AK173132|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	NM_001004164|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
mm9_v1_chr18_-_38094995_38095137	3.70078	FOXN1.p2	AK140734|Diap1|13367|diaphanous homolog 1 (Drosophila)	AK220466|Diap1|13367|diaphanous homolog 1 (Drosophila)	NM_007858|Diap1|13367|diaphanous homolog 1 (Drosophila)	U96963|Diap1|13367|diaphanous homolog 1 (Drosophila)	BC070412|Diap1|13367|diaphanous homolog 1 (Drosophila)	AK012707|Diap1|13367|diaphanous homolog 1 (Drosophila)
mm9_v1_chr5_+_110973321_110973404	3.69898	FOXN1.p2	NM_198306|Galnt9|231605|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	AK032568|Galnt9|231605|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9
mm9_v1_chr13_-_95992547_95992641	3.68214	FOXN1.p2	AK083166|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr7_+_26052714_26052731	3.68018	FOXN1.p2	AK147535|Cic|71722|capicua homolog (Drosophila)
mm9_v1_chr2_-_163470841_163470868	3.61375	FOXN1.p2	BC029026|Serinc3|26943|serine incorporator 3	BC029980|Serinc3|26943|serine incorporator 3	AK031101|Serinc3|26943|serine incorporator 3
mm9_v1_chr3_+_115710653_115710683	3.61191	FOXN1.p2	BC094444|Extl2|58193|exostoses (multiple)-like 2
mm9_v1_chrX_-_137077133_137077229	3.60128	FOXN1.p2	AF201287|Tsc22d3|14605|TSC22 domain family, member 3
mm9_v1_chr4_+_122513481_122513506	3.56484	FOXN1.p2	AK151107|Ppt1|19063|palmitoyl-protein thioesterase 1	AK152940|Ppt1|19063|palmitoyl-protein thioesterase 1	NM_008917|Ppt1|19063|palmitoyl-protein thioesterase 1	AK152474|Ppt1|19063|palmitoyl-protein thioesterase 1	AK014561|Ppt1|19063|palmitoyl-protein thioesterase 1	AK153106|Ppt1|19063|palmitoyl-protein thioesterase 1	AK153316|Ppt1|19063|palmitoyl-protein thioesterase 1	AK171668|Ppt1|19063|palmitoyl-protein thioesterase 1	AF087568|Ppt1|19063|palmitoyl-protein thioesterase 1	AK169658|Ppt1|19063|palmitoyl-protein thioesterase 1	AK151055|Ppt1|19063|palmitoyl-protein thioesterase 1	AK148314|Ppt1|19063|palmitoyl-protein thioesterase 1	AF326557|Ppt1|19063|palmitoyl-protein thioesterase 1	AF326558|Ppt1|19063|palmitoyl-protein thioesterase 1	AK169579|Ppt1|19063|palmitoyl-protein thioesterase 1
mm9_v1_chr3_+_28162135_28162218	3.51914	FOXN1.p2	BC050866|Tnik|665113|TRAF2 and NCK interacting kinase	BC050868|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163007|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163008|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163009|Tnik|665113|TRAF2 and NCK interacting kinase	NM_026910|Tnik|665113|TRAF2 and NCK interacting kinase	AK041777|Tnik|665113|TRAF2 and NCK interacting kinase	AK133568|Tnik|665113|TRAF2 and NCK interacting kinase	AK039113|Tnik|665113|TRAF2 and NCK interacting kinase
mm9_v1_chr10_+_80599284_80599377	3.38396	FOXN1.p2	AK149961|Zbtb7a|16969|zinc finger and BTB domain containing 7a	AK154907|Zbtb7a|16969|zinc finger and BTB domain containing 7a	AK157664|Zbtb7a|16969|zinc finger and BTB domain containing 7a	BC057204|Zbtb7a|16969|zinc finger and BTB domain containing 7a
mm9_v1_chr9_-_113935832_113935880	3.32133	FOXN1.p2	AK013142|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK089994|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145665|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145998|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK045742|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC096582|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK141177|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK163472|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK044693|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK039010|Fbxl2|72179|F-box and leucine-rich repeat protein 2	NM_178624|Fbxl2|72179|F-box and leucine-rich repeat protein 2
mm9_v1_chr7_-_135561641_135561759	3.27145	FOXN1.p2	BC109178|Rgs10|67865|regulator of G-protein signalling 10	AK152143|Rgs10|67865|regulator of G-protein signalling 10	BC109179|Rgs10|67865|regulator of G-protein signalling 10	AK088009|Rgs10|67865|regulator of G-protein signalling 10	AK009283|Rgs10|67865|regulator of G-protein signalling 10	AK017314|Rgs10|67865|regulator of G-protein signalling 10	AK021202|Rgs10|67865|regulator of G-protein signalling 10	NM_026418|Rgs10|67865|regulator of G-protein signalling 10	AK009686|Rgs10|67865|regulator of G-protein signalling 10
mm9_v1_chr14_-_104242892_104242969	3.2506	FOXN1.p2	U32329|Ednrb|13618|endothelin receptor type B	AK085165|Ednrb|13618|endothelin receptor type B	AK076426|Ednrb|13618|endothelin receptor type B	AK085532|Ednrb|13618|endothelin receptor type B	NM_007904|Ednrb|13618|endothelin receptor type B
mm9_v1_chr6_-_127718746_127718746	3.2424	FOXN1.p2	BC060250|Prmt8|381813|protein arginine N-methyltransferase 8	NM_201371|Prmt8|381813|protein arginine N-methyltransferase 8
mm9_v1_chr9_+_70055127_70055237	3.20066	FOXN1.p2	AK009155|Myo1e|71602|myosin IE	AK009427|Myo1e|71602|myosin IE	AK029145|Myo1e|71602|myosin IE	NM_181072|Myo1e|71602|myosin IE	BC040786|Myo1e|71602|myosin IE	BC051391|Myo1e|71602|myosin IE
mm9_v1_chr10_+_59569206_59569342	3.17366	FOXN1.p2	AK122233|Spock2|94214|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2
mm9_v1_chr13_+_93195850_93196061	3.16231	FOXN1.p2	AK078203|Ankrd34b|218440|ankyrin repeat domain 34B	AK090387|Ankrd34b|218440|ankyrin repeat domain 34B	NM_175455|Ankrd34b|218440|ankyrin repeat domain 34B	BC096609|Ankrd34b|218440|ankyrin repeat domain 34B	BC119312|Ankrd34b|218440|ankyrin repeat domain 34B	BC119314|Ankrd34b|218440|ankyrin repeat domain 34B
mm9_v1_chrX_+_136145321_136145344	3.10047	FOXN1.p2	AF426411|Rnf128|66889|ring finger protein 128
mm9_v1_chr18_-_46685512_46685538	3.07812	FOXN1.p2	AK147729|Fem1c|240263|fem-1 homolog c (C.elegans)
mm9_v1_chr16_-_91011339_91011552	3.06343	FOXN1.p2	NM_001045515|Synj1|104015|synaptojanin 1	NM_001164483|Synj1|104015|synaptojanin 1
mm9_v1_chr6_-_121423682_121423717	3.02064	FOXN1.p2	AK122446|Iqsec3|243621|IQ motif and Sec7 domain 3	AK147268|Iqsec3|243621|IQ motif and Sec7 domain 3	AK169437|Iqsec3|243621|IQ motif and Sec7 domain 3	NM_001033354|Iqsec3|243621|IQ motif and Sec7 domain 3
mm9_v1_chr7_-_89079168_89079313	3.01917	FOXN1.p2	AK014849|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	AK044858|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	AK051401|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	AK135495|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3
mm9_v1_chrX_+_12164878_12165013	2.99692	FOXN1.p2	NM_027439|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AK168139|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AK076495|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AK017482|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AK151735|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AK029405|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AB192471|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	BC014706|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2
mm9_v1_chr3_+_115710360_115710449	2.98115	FOXN1.p2	NM_001163515|Extl2|58193|exostoses (multiple)-like 2	NM_021388|Extl2|58193|exostoses (multiple)-like 2	AK159281|Extl2|58193|exostoses (multiple)-like 2	AK028677|Extl2|58193|exostoses (multiple)-like 2	AK161866|Extl2|58193|exostoses (multiple)-like 2	BC031438|Extl2|58193|exostoses (multiple)-like 2
mm9_v1_chr17_-_36169573_36169660	2.97028	FOXN1.p2	AF100699|H2-T23|15040|histocompatibility 2, T region locus 23	AF100700|H2-T23|15040|histocompatibility 2, T region locus 23	AF100702|H2-T23|15040|histocompatibility 2, T region locus 23	AF057279|H2-T23|15040|histocompatibility 2, T region locus 23	AF082510|H2-T23|15040|histocompatibility 2, T region locus 23	BC099472|H2-T23|15040|histocompatibility 2, T region locus 23	AB359230|H2-T23|15040|histocompatibility 2, T region locus 23	AK133502|H2-T23|15040|histocompatibility 2, T region locus 23	M11284|H2-T23|15040|histocompatibility 2, T region locus 23	NM_010398|H2-T23|15040|histocompatibility 2, T region locus 23
mm9_v1_chr11_-_97605846_97606123	2.9511	FOXN1.p2	AY050219|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK170392|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK037013|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK171497|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK089414|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	BC047282|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	NM_054051|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK146559|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
mm9_v1_chr1_+_154802144_154802177	2.94837	FOXN1.p2	AK129155|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr11_+_68873278_68873304	2.94803	FOXN1.p2	AK169875|2310047M10Rik|71923|RIKEN cDNA 2310047M10 gene
mm9_v1_chr14_+_61253517_61253607	2.93471	FOXN1.p2	NM_001033272|Spata13|219140|spermatogenesis associated 13
mm9_v1_chr13_-_69877709_69877899	2.89935	FOXN1.p2	BC058543|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1	BC116979|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1	BC116981|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1
mm9_v1_chr1_+_154802091_154802137	2.825	FOXN1.p2	AK084041|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2	AK083532|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr1_-_39634096_39634285	2.81613	FOXN1.p2	BC115968|Rnf149|67702|ring finger protein 149	NM_001033135|Rnf149|67702|ring finger protein 149	AK155360|Rnf149|67702|ring finger protein 149
mm9_v1_chr6_-_85324557_85324691	2.76155	FOXN1.p2	BC141380|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)	AK154922|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)	AK129230|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)	NM_001003955|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)	NM_177466|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)
mm9_v1_chr18_+_60685819_60685850	2.72618	FOXN1.p2	AK016059|Dctn4|67665|dynactin 4	AK034292|Dctn4|67665|dynactin 4
mm9_v1_chr9_-_106101269_106101269	2.72068	FOXN1.p2	AY332616|Ppm1m|67905|protein phosphatase 1M	NM_198931|Ppm1m|67905|protein phosphatase 1M
mm9_v1_chr17_-_36169460_36169530	2.66236	FOXN1.p2	
mm9_v1_chr12_-_4038848_4038914	2.63724	FOXN1.p2	BC147643|Efr3b|668212|EFR3 homolog B (S. cerevisiae)	BC157968|Efr3b|668212|EFR3 homolog B (S. cerevisiae)	NM_001082483|Efr3b|668212|EFR3 homolog B (S. cerevisiae)
mm9_v1_chr17_-_25974021_25974145	2.6289	FOXN1.p2	BC021549|Rhbdl1|214951|rhomboid, veinlet-like 1 (Drosophila)	NM_144816|Rhbdl1|214951|rhomboid, veinlet-like 1 (Drosophila)	AK140428|Rhbdl1|214951|rhomboid, veinlet-like 1 (Drosophila)
mm9_v1_chr5_+_33361386_33361464	2.62129	FOXN1.p2	NM_011738|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm9_v1_chr1_-_156946739_156946767	2.60993	FOXN1.p2	BC051986|Ier5|15939|immediate early response 5	BC021013|Ier5|15939|immediate early response 5	BC037147|Ier5|15939|immediate early response 5	AK146609|Ier5|15939|immediate early response 5	AK150461|Ier5|15939|immediate early response 5	AF079527|Ier5|15939|immediate early response 5	NM_010500|Ier5|15939|immediate early response 5
mm9_v1_chr12_+_33063902_33064058	2.60394	FOXN1.p2	AK171109|2010109K11Rik|72123|RIKEN cDNA 2010109K11 gene
mm9_v1_chr17_-_34136726_34136785	2.59503	FOXN1.p2	BC011306|H2-K1|14972|histocompatibility 2, K1, K region	J00400|H2-K1|14972|histocompatibility 2, K1, K region
mm9_v1_chr1_+_154802198_154802230	2.58422	FOXN1.p2	BC089007|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2	NM_175460|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr2_-_153270059_153270214	2.58045	FOXN1.p2	BC079552|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	AK157863|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	AK139459|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	NM_001001986|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene
mm9_v1_chr17_-_34136793_34136951	2.55525	FOXN1.p2	M14827|H2-K1|14972|histocompatibility 2, K1, K region
mm9_v1_chr2_-_42508486_42508592	2.55495	FOXN1.p2	BC064765|Lrp1b|94217|low density lipoprotein-related protein 1B (deleted in tumors)	AK080989|Lrp1b|94217|low density lipoprotein-related protein 1B (deleted in tumors)	AK039425|Lrp1b|94217|low density lipoprotein-related protein 1B (deleted in tumors)
mm9_v1_chr11_+_68873212_68873277	2.55363	FOXN1.p2	AK009886|2310047M10Rik|71923|RIKEN cDNA 2310047M10 gene	AK151629|2310047M10Rik|71923|RIKEN cDNA 2310047M10 gene	NM_028005|2310047M10Rik|71923|RIKEN cDNA 2310047M10 gene
mm9_v1_chr2_-_163470870_163470922	2.52182	FOXN1.p2	NM_012032|Serinc3|26943|serine incorporator 3
mm9_v1_chr14_+_115491514_115491644	2.5123	FOXN1.p2	BC115712|Gpc5|103978|glypican 5
mm9_v1_chr11_+_69154265_69154342	2.50614	FOXN1.p2	AK002962|A030009H04Rik|80515|RIKEN cDNA A030009H04 gene	AK045471|A030009H04Rik|80515|RIKEN cDNA A030009H04 gene	AB041807|A030009H04Rik|80515|RIKEN cDNA A030009H04 gene	BC021519|A030009H04Rik|80515|RIKEN cDNA A030009H04 gene
mm9_v1_chr18_+_60685866_60685974	2.49027	FOXN1.p2	AK162552|Dctn4|67665|dynactin 4	AK168484|Dctn4|67665|dynactin 4	AK160813|Dctn4|67665|dynactin 4	AK050896|Dctn4|67665|dynactin 4	AK019382|Dctn4|67665|dynactin 4	BC034725|Dctn4|67665|dynactin 4	NM_026302|Dctn4|67665|dynactin 4	AK141855|Dctn4|67665|dynactin 4	AK003238|Dctn4|67665|dynactin 4	AK089264|Dctn4|67665|dynactin 4	BC006677|Dctn4|67665|dynactin 4	AK177969|Dctn4|67665|dynactin 4	AK197489|Dctn4|67665|dynactin 4
mm9_v1_chr6_-_121423633_121423663	2.48605	FOXN1.p2	AK147351|Iqsec3|243621|IQ motif and Sec7 domain 3
mm9_v1_chr7_+_19766490_19766570	2.44769	FOXN1.p2	NM_001162996|Eml2|72205|echinoderm microtubule associated protein like 2	NM_028153|Eml2|72205|echinoderm microtubule associated protein like 2	BC055476|Eml2|72205|echinoderm microtubule associated protein like 2	AK005562|Eml2|72205|echinoderm microtubule associated protein like 2
mm9_v1_chr2_-_73613381_73613446	2.42062	FOXN1.p2	NM_001113246|Chn1|108699|chimerin (chimaerin) 1	NM_001166603|Chn1|108699|chimerin (chimaerin) 1
mm9_v1_chr17_+_34341467_34341526	2.40174	FOXN1.p2	AK145234|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151657|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK161091|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	BC051257|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK020022|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK079667|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151376|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151483|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK153287|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	BC005578|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
mm9_v1_chr15_+_87374667_87374737	2.38082	FOXN1.p2	AK090307|Fam19a5|106014|family with sequence similarity 19, member A5
mm9_v1_chr1_-_59176902_59176978	2.37773	FOXN1.p2	BC147243|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	BC147244|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	AK161697|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	NM_001033449|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4
mm9_v1_chr17_+_24625943_24625963	2.37601	FOXN1.p2	AK129327|Caskin1|268932|CASK interacting protein 1	BC060720|Caskin1|268932|CASK interacting protein 1
mm9_v1_chr17_+_57244828_57244840	2.36495	FOXN1.p2	BC138767|Tnfsf9|21950|tumor necrosis factor (ligand) superfamily, member 9	BC138770|Tnfsf9|21950|tumor necrosis factor (ligand) superfamily, member 9	AK169471|Tnfsf9|21950|tumor necrosis factor (ligand) superfamily, member 9
mm9_v1_chr2_+_125684938_125684961	2.32885	FOXN1.p2	AK082521|Galk2|69976|galactokinase 2	NM_175154|Galk2|69976|galactokinase 2
mm9_v1_chr16_+_77013880_77014313	2.31663	FOXN1.p2	AK011798|Usp25|30940|ubiquitin specific peptidase 25	AK036456|Usp25|30940|ubiquitin specific peptidase 25	AF170563|Usp25|30940|ubiquitin specific peptidase 25	BC048171|Usp25|30940|ubiquitin specific peptidase 25	BC063059|Usp25|30940|ubiquitin specific peptidase 25	NM_013918|Usp25|30940|ubiquitin specific peptidase 25
mm9_v1_chr14_-_62175545_62175639	2.30898	FOXN1.p2	BC037015|6330409N04Rik|66674|RIKEN cDNA 6330409N04 gene	AK167306|6330409N04Rik|66674|RIKEN cDNA 6330409N04 gene	AK169059|6330409N04Rik|66674|RIKEN cDNA 6330409N04 gene	AK018290|6330409N04Rik|66674|RIKEN cDNA 6330409N04 gene	AK137685|6330409N04Rik|66674|RIKEN cDNA 6330409N04 gene	AK150789|6330409N04Rik|66674|RIKEN cDNA 6330409N04 gene	AK018044|6330409N04Rik|66674|RIKEN cDNA 6330409N04 gene
mm9_v1_chr9_+_89804612_89804703	2.2959	FOXN1.p2	NM_001039655|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	NM_011245|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	L20899|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1
mm9_v1_chr9_-_45792865_45792953	2.28894	FOXN1.p2	AK164573|2610005M20Rik|70308|RIKEN cDNA 2610005M20 gene	AK012116|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	U57747|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	AK012164|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	BC003771|2610005M20Rik|70308|RIKEN cDNA 2610005M20 gene	BC002037|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	BC056211|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	AK011326|2610005M20Rik|70308|RIKEN cDNA 2610005M20 gene	AK153424|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	NM_008775|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
mm9_v1_chr7_-_89079335_89079355	2.28576	FOXN1.p2	AK045542|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	NM_013886|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3
mm9_v1_chr5_+_33361479_33361562	2.26946	FOXN1.p2	AK149224|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	AK083936|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	D87661|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	BC061497|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	AF077002|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm9_v1_chr9_-_75459046_75459076	2.26704	FOXN1.p2	AF177170|Tmod2|50876|tropomodulin 2
mm9_v1_chr12_+_45429857_45429887	2.2659	FOXN1.p2	AK043838|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule	NM_001146031|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule	NM_176930|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule
mm9_v1_chr9_+_54997159_54997206	2.25424	FOXN1.p2	AK042515|Ube2q2|109161|ubiquitin-conjugating enzyme E2Q (putative) 2	NM_180600|Ube2q2|109161|ubiquitin-conjugating enzyme E2Q (putative) 2	AK083216|Ube2q2|109161|ubiquitin-conjugating enzyme E2Q (putative) 2
mm9_v1_chr9_+_89804723_89804776	2.24495	FOXN1.p2	AK079638|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	BC042449|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	AK140227|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	AK140380|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	AK162908|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	AK038936|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	AF169826|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	BC138682|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	BC138683|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1
mm9_v1_chr7_-_107520411_107520510	2.23874	FOXN1.p2	AK146268|Ppme1|72590|protein phosphatase methylesterase 1	AK028261|Ppme1|72590|protein phosphatase methylesterase 1	AK012256|Ppme1|72590|protein phosphatase methylesterase 1	AK154876|Ppme1|72590|protein phosphatase methylesterase 1
mm9_v1_chr17_-_30713158_30713239	2.22089	FOXN1.p2	AK153973|Btbd9|224671|BTB (POZ) domain containing 9	NM_027060|Btbd9|224671|BTB (POZ) domain containing 9	NM_172618|Btbd9|224671|BTB (POZ) domain containing 9
mm9_v1_chr18_+_60685851_60685863	2.19754	FOXN1.p2	AK163240|Dctn4|67665|dynactin 4
mm9_v1_chr6_-_126594802_126594858	2.18973	FOXN1.p2	AK039559|Kcna1|16485|potassium voltage-gated channel, shaker-related subfamily, member 1	Y00305|Kcna1|16485|potassium voltage-gated channel, shaker-related subfamily, member 1
mm9_v1_chr9_+_54997318_54997391	2.18501	FOXN1.p2	AK150776|Ube2q2|109161|ubiquitin-conjugating enzyme E2Q (putative) 2	BC029111|Ube2q2|109161|ubiquitin-conjugating enzyme E2Q (putative) 2
mm9_v1_chr4_-_91038638_91038669	2.18499	FOXN1.p2	BC046598|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr6_+_8898613_8898694	2.1671	FOXN1.p2	AK083014|Nxph1|18231|neurexophilin 1
mm9_v1_chr2_-_56976530_56976555	2.15538	FOXN1.p2	AK087495|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2
mm9_v1_chr6_-_85463535_85463588	2.15241	FOXN1.p2	NM_020596|Egr4|13656|early growth response 4	AK141637|Egr4|13656|early growth response 4
mm9_v1_chr12_+_52791952_52792023	2.14167	FOXN1.p2	BC001985|Ap4s1|11782|adaptor-related protein complex AP-4, sigma 1	NM_021710|Ap4s1|11782|adaptor-related protein complex AP-4, sigma 1	AF092093|Ap4s1|11782|adaptor-related protein complex AP-4, sigma 1
mm9_v1_chr11_-_29925939_29926032	2.11366	FOXN1.p2	AK049034|Eml6|237711|echinoderm microtubule associated protein like 6	NM_146016|Eml6|237711|echinoderm microtubule associated protein like 6
mm9_v1_chr10_-_108447996_108448001	2.11216	FOXN1.p2	AK013798|Syt1|20979|synaptotagmin I	AK078790|Syt1|20979|synaptotagmin I
mm9_v1_chr10_+_106708886_106708980	2.10327	FOXN1.p2	NM_001033223|Lin7a|108030|lin-7 homolog A (C. elegans)	NM_001039354|Lin7a|108030|lin-7 homolog A (C. elegans)	BC105965|Lin7a|108030|lin-7 homolog A (C. elegans)	AK160671|Lin7a|108030|lin-7 homolog A (C. elegans)	BC029721|Lin7a|108030|lin-7 homolog A (C. elegans)
mm9_v1_chr13_+_118391126_118391233	2.10311	FOXN1.p2	AK158322|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1	NM_010408|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1
mm9_v1_chr18_+_33098694_33098843	2.0975	FOXN1.p2	NM_009793|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	AK030219|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	BC070420|Camk4|12326|calcium/calmodulin-dependent protein kinase IV
mm9_v1_chr10_+_59569052_59569061	2.08991	FOXN1.p2	BC060210|Spock2|94214|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2
mm9_v1_chr11_-_120209770_120209811	2.08597	FOXN1.p2	M21495|Actg1|11465|actin, gamma, cytoplasmic 1	BC099371|Actg1|11465|actin, gamma, cytoplasmic 1	BC003337|Actg1|11465|actin, gamma, cytoplasmic 1	BC018571|Actg1|11465|actin, gamma, cytoplasmic 1	BC021796|Actg1|11465|actin, gamma, cytoplasmic 1	BC023248|Actg1|11465|actin, gamma, cytoplasmic 1	NM_009609|Actg1|11465|actin, gamma, cytoplasmic 1	AF195094|Actg1|11465|actin, gamma, cytoplasmic 1	AK149927|Actg1|11465|actin, gamma, cytoplasmic 1	AK150209|Actg1|11465|actin, gamma, cytoplasmic 1	AK162157|Actg1|11465|actin, gamma, cytoplasmic 1	AK076081|Actg1|11465|actin, gamma, cytoplasmic 1	AK087983|Actg1|11465|actin, gamma, cytoplasmic 1	AK157726|Actg1|11465|actin, gamma, cytoplasmic 1	AK012251|Actg1|11465|actin, gamma, cytoplasmic 1	AK152202|Actg1|11465|actin, gamma, cytoplasmic 1	AK153446|Actg1|11465|actin, gamma, cytoplasmic 1	AK159867|Actg1|11465|actin, gamma, cytoplasmic 1
mm9_v1_chr3_+_136333670_136333672	2.08082	FOXN1.p2	AK150393|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr15_+_100701068_100701116	2.07774	FOXN1.p2	NM_001077499|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AK158609|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr8_-_26707934_26708016	2.0763	FOXN1.p2	AK076546|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	BC055685|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	NM_173012|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	AK041725|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	AK031563|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	AK034050|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	AK050943|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	AK163507|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2
mm9_v1_chr4_-_86876328_86876443	2.06967	FOXN1.p2	AK038800|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK136058|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	NM_172426|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr8_-_74195650_74195661	2.06127	FOXN1.p2	NM_001029873|Unc13a|382018|unc-13 homolog A (C. elegans)	AK035920|Unc13a|382018|unc-13 homolog A (C. elegans)
mm9_v1_chr9_+_86465577_86465659	2.06081	FOXN1.p2	NM_001145969|Rwdd2a|69519|RWD domain containing 2A	AK006533|Rwdd2a|69519|RWD domain containing 2A	BC115691|Rwdd2a|69519|RWD domain containing 2A	BC115692|Rwdd2a|69519|RWD domain containing 2A	NM_001145968|Rwdd2a|69519|RWD domain containing 2A	NM_027100|Rwdd2a|69519|RWD domain containing 2A
mm9_v1_chr18_-_39649411_39649429	2.05797	FOXN1.p2	BC008154|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr5_-_31999977_32000001	2.05316	FOXN1.p2	BC023339|Rbks|71336|ribokinase	NM_153196|Rbks|71336|ribokinase	AK017229|Rbks|71336|ribokinase	AK138939|Rbks|71336|ribokinase
mm9_v1_chr14_-_80171003_80171120	2.04863	FOXN1.p2	AK140407|Pcdh8|18530|protocadherin 8	AF231125|Pcdh8|18530|protocadherin 8	BC052388|Pcdh8|18530|protocadherin 8	BC053008|Pcdh8|18530|protocadherin 8	AK048638|Pcdh8|18530|protocadherin 8	AK049982|Pcdh8|18530|protocadherin 8	NM_001042726|Pcdh8|18530|protocadherin 8	NM_021543|Pcdh8|18530|protocadherin 8
mm9_v1_chr9_-_75458865_75458907	2.04743	FOXN1.p2	AF237629|Tmod2|50876|tropomodulin 2
mm9_v1_chr12_+_77505356_77505408	2.04414	FOXN1.p2	NM_008301|Hspa2|15512|heat shock protein 2	BC004714|Hspa2|15512|heat shock protein 2	AK132261|Hspa2|15512|heat shock protein 2
mm9_v1_chr1_-_174136874_174136913	2.04048	FOXN1.p2	NM_011063|Pea15a|18611|phosphoprotein enriched in astrocytes 15A
mm9_v1_chr1_-_174136809_174136866	2.00551	FOXN1.p2	BC038282|Pea15a|18611|phosphoprotein enriched in astrocytes 15A	AK161635|Pea15a|18611|phosphoprotein enriched in astrocytes 15A	AK077421|Pea15a|18611|phosphoprotein enriched in astrocytes 15A	AK089070|Pea15a|18611|phosphoprotein enriched in astrocytes 15A	AK161977|Pea15a|18611|phosphoprotein enriched in astrocytes 15A	AK153493|Pea15a|18611|phosphoprotein enriched in astrocytes 15A	AK153141|Pea15a|18611|phosphoprotein enriched in astrocytes 15A
mm9_v1_chr9_-_21856445_21856470	1.99938	FOXN1.p2	U29148|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	BC052097|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	AK090281|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	NM_010487|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)
mm9_v1_chr7_-_25757587_25757746	1.992	FOXN1.p2	L40934|Rabac1|14470|Rab acceptor 1 (prenylated)	AK009726|Rabac1|14470|Rab acceptor 1 (prenylated)	AK150681|Rabac1|14470|Rab acceptor 1 (prenylated)	AK008559|Rabac1|14470|Rab acceptor 1 (prenylated)	AF252856|Rabac1|14470|Rab acceptor 1 (prenylated)	AF120162|Rabac1|14470|Rab acceptor 1 (prenylated)	BC008242|Rabac1|14470|Rab acceptor 1 (prenylated)	AK170289|Rabac1|14470|Rab acceptor 1 (prenylated)	NM_010261|Rabac1|14470|Rab acceptor 1 (prenylated)
mm9_v1_chr10_-_108448003_108448027	1.98752	FOXN1.p2	BC048187|Syt1|20979|synaptotagmin I	AK019304|Syt1|20979|synaptotagmin I	AK048973|Syt1|20979|synaptotagmin I	AK133578|Syt1|20979|synaptotagmin I
mm9_v1_chr18_-_10610261_10610307	1.98454	FOXN1.p2	BC151069|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	BC151077|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	BC172153|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm9_v1_chr1_-_38954763_38954854	1.98135	FOXN1.p2	AF360543|Chst10|98388|carbohydrate sulfotransferase 10	AK046415|Chst10|98388|carbohydrate sulfotransferase 10	AK171758|Chst10|98388|carbohydrate sulfotransferase 10
mm9_v1_chr9_+_25289181_25289225	1.97424	FOXN1.p2	NM_026189|Eepd1|67484|endonuclease/exonuclease/phosphatase family domain containing 1	AK168564|Eepd1|67484|endonuclease/exonuclease/phosphatase family domain containing 1	AK009180|Eepd1|67484|endonuclease/exonuclease/phosphatase family domain containing 1	AK019086|Eepd1|67484|endonuclease/exonuclease/phosphatase family domain containing 1
mm9_v1_chr9_-_70504693_70504717	1.96135	FOXN1.p2	BC069845|Fam63b|235461|family with sequence similarity 63, member B	BC055816|Fam63b|235461|family with sequence similarity 63, member B
mm9_v1_chr4_-_91038729_91038745	1.96036	FOXN1.p2	U29088|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_010486|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207686|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr8_+_85689250_85689250	1.94277	FOXN1.p2	AK049049|Tbc1d9|71310|TBC1 domain family, member 9	NM_001111304|Tbc1d9|71310|TBC1 domain family, member 9	NM_027758|Tbc1d9|71310|TBC1 domain family, member 9
mm9_v1_chr13_+_118391270_118391304	1.93761	FOXN1.p2	AJ225123|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1
mm9_v1_chr18_-_46685557_46685627	1.92328	FOXN1.p2	AK129440|Fem1c|240263|fem-1 homolog c (C.elegans)	AK049336|Fem1c|240263|fem-1 homolog c (C.elegans)	AK028330|Fem1c|240263|fem-1 homolog c (C.elegans)	NM_173423|Fem1c|240263|fem-1 homolog c (C.elegans)
mm9_v1_chr17_-_34137221_34137291	1.92327	FOXN1.p2	AK150790|H2-K1|14972|histocompatibility 2, K1, K region	AK150967|H2-K1|14972|histocompatibility 2, K1, K region	AK159321|H2-K1|14972|histocompatibility 2, K1, K region	AK160102|H2-K1|14972|histocompatibility 2, K1, K region	AK168517|H2-K1|14972|histocompatibility 2, K1, K region	L23494|H2-K1|14972|histocompatibility 2, K1, K region	L23495|H2-K1|14972|histocompatibility 2, K1, K region	BC151193|H2-K1|14972|histocompatibility 2, K1, K region	AK153419|H2-K1|14972|histocompatibility 2, K1, K region	NM_001001892|H2-K1|14972|histocompatibility 2, K1, K region	AF470231|H2-K1|14972|histocompatibility 2, K1, K region
mm9_v1_chr19_-_59018112_59018143	1.91377	FOXN1.p2	AK076683|Hspa12a|73442|heat shock protein 12A	AK076668|Hspa12a|73442|heat shock protein 12A	AK087732|Hspa12a|73442|heat shock protein 12A
mm9_v1_chr4_-_125933482_125933589	1.91208	FOXN1.p2	BC023677|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	BC023774|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	AK151613|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	NM_001145970|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	NM_144941|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1
mm9_v1_chr5_-_108978950_108979047	1.90757	FOXN1.p2	BC014803|Cplx1|12889|complexin 1	D38614|Cplx1|12889|complexin 1	AK158166|Cplx1|12889|complexin 1	AK134820|Cplx1|12889|complexin 1	AK159026|Cplx1|12889|complexin 1	NM_007756|Cplx1|12889|complexin 1
mm9_v1_chr1_-_59176583_59176664	1.90039	FOXN1.p2	AK170118|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	AK167733|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	NM_001037812|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4
mm9_v1_chr7_-_107520359_107520405	1.89507	FOXN1.p2	AK146051|Ppme1|72590|protein phosphatase methylesterase 1	BC029064|Ppme1|72590|protein phosphatase methylesterase 1	BC014867|Ppme1|72590|protein phosphatase methylesterase 1	NM_028292|Ppme1|72590|protein phosphatase methylesterase 1
mm9_v1_chr14_+_70977443_70977712	1.89193	FOXN1.p2	AK137014|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK089446|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	NM_153136|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK155086|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK157937|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK145997|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18
mm9_v1_chr18_-_81130721_81130824	1.88747	FOXN1.p2	BC057000|Atp9b|50771|ATPase, class II, type 9B	BC079626|Atp9b|50771|ATPase, class II, type 9B	AK044331|Atp9b|50771|ATPase, class II, type 9B	AK166562|Atp9b|50771|ATPase, class II, type 9B	NM_015805|Atp9b|50771|ATPase, class II, type 9B
mm9_v1_chr12_+_45429913_45429941	1.8772	FOXN1.p2	AK087693|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule	AK122252|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule
mm9_v1_chr3_-_108365340_108365435	1.87591	FOXN1.p2	NM_026198|Tmem167b|67495|transmembrane protein 167B
mm9_v1_chr17_-_29374656_29374735	1.86731	FOXN1.p2	AK147529|Cpne5|240058|copine V	AK044042|Cpne5|240058|copine V	NM_153166|Cpne5|240058|copine V	BC036971|Cpne5|240058|copine V
mm9_v1_chr17_+_6106857_6106857	1.86337	FOXN1.p2	AK043826|Tulp4|68842|tubby like protein 4	AK084820|Tulp4|68842|tubby like protein 4
mm9_v1_chr2_-_157392026_157392132	1.84566	FOXN1.p2	AB037891|Blcap|53619|bladder cancer associated protein homolog (human)	BC026935|Blcap|53619|bladder cancer associated protein homolog (human)	BC083339|Blcap|53619|bladder cancer associated protein homolog (human)	AK038884|Blcap|53619|bladder cancer associated protein homolog (human)	AK011673|Blcap|53619|bladder cancer associated protein homolog (human)	AK170338|Blcap|53619|bladder cancer associated protein homolog (human)	AK018127|Blcap|53619|bladder cancer associated protein homolog (human)	NM_016916|Blcap|53619|bladder cancer associated protein homolog (human)
mm9_v1_chr17_+_34341417_34341460	1.84042	FOXN1.p2	NM_011530|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK159200|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
mm9_v1_chr5_-_34856561_34856665	1.837	FOXN1.p2	AK160165|Tnip2|231130|TNFAIP3 interacting protein 2	BC052083|Tnip2|231130|TNFAIP3 interacting protein 2	AJ304865|Tnip2|231130|TNFAIP3 interacting protein 2	NM_139064|Tnip2|231130|TNFAIP3 interacting protein 2
mm9_v1_chr17_-_34137152_34137212	1.83011	FOXN1.p2	BC054430|H2-K1|14972|histocompatibility 2, K1, K region	M11975|H2-K1|14972|histocompatibility 2, K1, K region	AY989882|H2-K1|14972|histocompatibility 2, K1, K region	M60168|H2-K1|14972|histocompatibility 2, K1, K region	M60169|H2-K1|14972|histocompatibility 2, K1, K region	M69071|H2-K1|14972|histocompatibility 2, K1, K region	M69072|H2-K1|14972|histocompatibility 2, K1, K region	M69073|H2-K1|14972|histocompatibility 2, K1, K region	U47328|H2-K1|14972|histocompatibility 2, K1, K region	U47330|H2-K1|14972|histocompatibility 2, K1, K region
mm9_v1_chr10_-_115910911_115910982	1.81589	FOXN1.p2	AK013647|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4
mm9_v1_chr19_+_55390514_55390614	1.81498	FOXN1.p2	BC019386|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)
mm9_v1_chr2_+_131036131_131036175	1.81312	FOXN1.p2	AK009634|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene	AK002807|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene	BC048399|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene	NM_027129|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene
mm9_v1_chr9_-_100446444_100446539	1.78971	FOXN1.p2	BC002015|Nck1|17973|non-catalytic region of tyrosine kinase adaptor protein 1	NM_010878|Nck1|17973|non-catalytic region of tyrosine kinase adaptor protein 1	AK051854|Nck1|17973|non-catalytic region of tyrosine kinase adaptor protein 1
mm9_v1_chr9_+_25289110_25289167	1.77545	FOXN1.p2	AK173239|Eepd1|67484|endonuclease/exonuclease/phosphatase family domain containing 1	BC025571|Eepd1|67484|endonuclease/exonuclease/phosphatase family domain containing 1
mm9_v1_chr3_+_136333733_136333756	1.7668	FOXN1.p2	J05479|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	NM_008913|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	BC138612|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr7_-_31836457_31836500	1.73511	FOXN1.p2	NM_022007|Fxyd7|57780|FXYD domain-containing ion transport regulator 7	AK004113|Fxyd7|57780|FXYD domain-containing ion transport regulator 7	BC048737|Fxyd7|57780|FXYD domain-containing ion transport regulator 7	BC061101|Fxyd7|57780|FXYD domain-containing ion transport regulator 7
mm9_v1_chr19_-_54019116_54019140	1.72491	FOXN1.p2	AK010048|Bbip1|66360|BBSome interacting protein 1	NM_001195338|Bbip1|66360|BBSome interacting protein 1	NM_001195348|Bbip1|66360|BBSome interacting protein 1
mm9_v1_chr9_-_122860112_122860126	1.72469	FOXN1.p2	AK004312|1110059G10Rik|66202|RIKEN cDNA 1110059G10 gene	AK012115|1110059G10Rik|66202|RIKEN cDNA 1110059G10 gene	AK160617|1110059G10Rik|66202|RIKEN cDNA 1110059G10 gene	NM_025419|1110059G10Rik|66202|RIKEN cDNA 1110059G10 gene
mm9_v1_chr3_-_107499460_107499466	1.71983	FOXN1.p2	NM_145542|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1
mm9_v1_chr19_-_14671832_14671910	1.71812	FOXN1.p2	AF229633|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chr17_+_85489991_85490039	1.71676	FOXN1.p2	AK155246|1700106N22Rik|73582|RIKEN cDNA 1700106N22 gene	NM_028576|1700106N22Rik|73582|RIKEN cDNA 1700106N22 gene
mm9_v1_chr3_-_107499129_107499327	1.71127	FOXN1.p2	AB092504|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1	BC018218|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1
mm9_v1_chr9_-_75458918_75458929	1.705	FOXN1.p2	AK018223|Tmod2|50876|tropomodulin 2
mm9_v1_chr9_-_122860070_122860097	1.69858	FOXN1.p2	AK220157|1110059G10Rik|66202|RIKEN cDNA 1110059G10 gene	BC034133|1110059G10Rik|66202|RIKEN cDNA 1110059G10 gene	AK083316|1110059G10Rik|66202|RIKEN cDNA 1110059G10 gene
mm9_v1_chr3_-_19935200_19935283	1.69318	FOXN1.p2	AK170581|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK034377|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK169855|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	BC058235|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)
mm9_v1_chr4_+_126287086_126287097	1.69131	FOXN1.p2	NM_001013755|5730409E04Rik|230757|RIKEN cDNA 5730409E04Rik gene	NM_001145950|5730409E04Rik|230757|RIKEN cDNA 5730409E04Rik gene
mm9_v1_chr3_+_82162037_82162075	1.68881	FOXN1.p2	AK162555|Mtap9|213582|microtubule-associated protein 9
mm9_v1_chr2_-_181333786_181333936	1.67384	FOXN1.p2	AK053884|Samd10|229011|sterile alpha motif domain containing 10	AK053048|Samd10|229011|sterile alpha motif domain containing 10	BC052921|Samd10|229011|sterile alpha motif domain containing 10	NM_172676|Samd10|229011|sterile alpha motif domain containing 10	AK171151|Samd10|229011|sterile alpha motif domain containing 10	BC019475|Samd10|229011|sterile alpha motif domain containing 10	AK164204|Samd10|229011|sterile alpha motif domain containing 10
mm9_v1_chr13_+_12658130_12658343	1.67151	FOXN1.p2	AK160664|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC058721|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	NM_026184|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	AK004981|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	AK041951|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC111900|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC112426|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC145888|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC145890|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	AF489856|Ero1lb|67475|ERO1-like beta (S. cerevisiae)
mm9_v1_chr9_-_99469067_99469110	1.66451	FOXN1.p2	AK078280|Armc8|74125|armadillo repeat containing 8	AK083094|Armc8|74125|armadillo repeat containing 8
mm9_v1_chr12_-_71212591_71212711	1.66074	FOXN1.p2	AK141891|Nin|18080|ninein	AK134860|Nin|18080|ninein
mm9_v1_chr13_+_81922236_81922300	1.65565	FOXN1.p2	AK017505|Cetn3|12626|centrin 3	BC002162|Cetn3|12626|centrin 3	BC054097|Cetn3|12626|centrin 3	AK003473|Cetn3|12626|centrin 3	AK006289|Cetn3|12626|centrin 3	AK004532|Cetn3|12626|centrin 3	AK006891|Cetn3|12626|centrin 3	NM_007684|Cetn3|12626|centrin 3	AK011821|Cetn3|12626|centrin 3
mm9_v1_chr4_+_155265932_155266005	1.64626	FOXN1.p2	AK147505|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	BC067016|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	NM_207223|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm9_v1_chr2_-_3336293_3336378	1.63643	FOXN1.p2	X64455|Meig1|104362|meiosis expressed gene 1	AK006347|Meig1|104362|meiosis expressed gene 1	AK007239|Meig1|104362|meiosis expressed gene 1
mm9_v1_chrX_+_71674576_71674653	1.63422	FOXN1.p2	AK148163|Ikbkg|16151|inhibitor of kappaB kinase gamma	NM_001161422|Ikbkg|16151|inhibitor of kappaB kinase gamma
mm9_v1_chr5_-_20561610_20561764	1.62765	FOXN1.p2	X63440|Ptpn12|19248|protein tyrosine phosphatase, non-receptor type 12	BC051980|Ptpn12|19248|protein tyrosine phosphatase, non-receptor type 12	NM_011203|Ptpn12|19248|protein tyrosine phosphatase, non-receptor type 12	AK154107|Ptpn12|19248|protein tyrosine phosphatase, non-receptor type 12
mm9_v1_chr19_+_59017874_59017915	1.61349	FOXN1.p2	NM_178689|Eno4|226265|enolase 4	AK032395|Eno4|226265|enolase 4
mm9_v1_chr6_+_149357407_149357610	1.61206	FOXN1.p2	AK162699|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	NM_001112796|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	NM_009753|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK051379|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK220497|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK051718|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK082523|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK045975|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK038585|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK043650|Bicd1|12121|bicaudal D homolog 1 (Drosophila)
mm9_v1_chr8_+_3631116_3631169	1.61104	FOXN1.p2	AK088364|Stxbp2|20911|syntaxin binding protein 2	BC008102|Stxbp2|20911|syntaxin binding protein 2	U19520|Stxbp2|20911|syntaxin binding protein 2	AF263345|Stxbp2|20911|syntaxin binding protein 2	AK133419|Stxbp2|20911|syntaxin binding protein 2	NM_011503|Stxbp2|20911|syntaxin binding protein 2	D42068|Stxbp2|20911|syntaxin binding protein 2	BC003477|Stxbp2|20911|syntaxin binding protein 2
mm9_v1_chr4_+_103236110_103236164	1.60409	FOXN1.p2	
mm9_v1_chr7_-_137663474_137663533	1.59997	FOXN1.p2	DQ093639|Ate1|11907|arginyltransferase 1	DQ093640|Ate1|11907|arginyltransferase 1	NM_001029895|Ate1|11907|arginyltransferase 1	AK138277|Ate1|11907|arginyltransferase 1
mm9_v1_chr7_+_26472573_26472596	1.59976	FOXN1.p2	BC013738|Tgfb1|21803|transforming growth factor, beta 1
mm9_v1_chr13_+_81922310_81922339	1.59928	FOXN1.p2	Y12474|Cetn3|12626|centrin 3
mm9_v1_chr5_+_138220097_138220178	1.59214	FOXN1.p2	AK008148|2010007H12Rik|69871|RIKEN cDNA 2010007H12 gene	AK008184|2010007H12Rik|69871|RIKEN cDNA 2010007H12 gene	NM_027242|2010007H12Rik|69871|RIKEN cDNA 2010007H12 gene	BC052497|2010007H12Rik|69871|RIKEN cDNA 2010007H12 gene
mm9_v1_chr5_-_121161653_121161655	1.58531	FOXN1.p2	BC065075|Dtx1|14357|deltex 1 homolog (Drosophila)
mm9_v1_chr9_-_86775154_86775279	1.57771	FOXN1.p2	M83985|Snap91|20616|synaptosomal-associated protein 91	NM_013669|Snap91|20616|synaptosomal-associated protein 91	BC031773|Snap91|20616|synaptosomal-associated protein 91	AK159570|Snap91|20616|synaptosomal-associated protein 91	AK147087|Snap91|20616|synaptosomal-associated protein 91
mm9_v1_chr14_-_52899101_52899219	1.57049	FOXN1.p2	AK160249|Rab2b|76338|RAB2B, member RAS oncogene family
mm9_v1_chr11_+_84339151_84339188	1.56993	FOXN1.p2	AK018772|1500016L03Rik|78365|RIKEN cDNA 1500016L03 gene
mm9_v1_chr12_+_45429966_45429998	1.56217	FOXN1.p2	AJ543321|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule
mm9_v1_chr9_-_64585562_64585585	1.56147	FOXN1.p2	AK014268|Rab11a|53869|RAB11a, member RAS oncogene family	AK147122|Rab11a|53869|RAB11a, member RAS oncogene family	NM_017382|Rab11a|53869|RAB11a, member RAS oncogene family
mm9_v1_chr16_+_3744037_3744202	1.55666	FOXN1.p2	NM_148924|Zfp263|74120|zinc finger protein 263	AK004765|Zfp263|74120|zinc finger protein 263	AK159455|Zfp263|74120|zinc finger protein 263	AF499776|Zfp263|74120|zinc finger protein 263	BC060162|Zfp263|74120|zinc finger protein 263
mm9_v1_chr10_+_19654195_19654331	1.55417	FOXN1.p2	AB006787|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5	BC116627|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5	BC116628|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5	BC133697|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5	NM_008580|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5
mm9_v1_chr9_-_64585429_64585448	1.54523	FOXN1.p2	AB232605|Rab11a|53869|RAB11a, member RAS oncogene family
mm9_v1_chr4_-_68615382_68615433	1.54337	FOXN1.p2	BC048789|Dbc1|56710|deleted in bladder cancer 1 (human)	BC079630|Dbc1|56710|deleted in bladder cancer 1 (human)	AB060589|Dbc1|56710|deleted in bladder cancer 1 (human)	NM_019967|Dbc1|56710|deleted in bladder cancer 1 (human)
mm9_v1_chr9_-_64585540_64585555	1.54148	FOXN1.p2	AK132072|Rab11a|53869|RAB11a, member RAS oncogene family	AK132159|Rab11a|53869|RAB11a, member RAS oncogene family	BC010722|Rab11a|53869|RAB11a, member RAS oncogene family
mm9_v1_chr9_-_95650735_95650795	1.54147	FOXN1.p2	BC137581|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	BC144726|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	NM_011643|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	U73625|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	U95167|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	U95168|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	U95169|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	AK038676|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1
mm9_v1_chr4_-_68615283_68615343	1.53175	FOXN1.p2	AK045420|Dbc1|56710|deleted in bladder cancer 1 (human)	AK028321|Dbc1|56710|deleted in bladder cancer 1 (human)
mm9_v1_chr5_-_141306258_141306416	1.52344	FOXN1.p2	BC111810|Gna12|14673|guanine nucleotide binding protein, alpha 12	M63659|Gna12|14673|guanine nucleotide binding protein, alpha 12	NM_010302|Gna12|14673|guanine nucleotide binding protein, alpha 12
mm9_v1_chr4_+_40669478_40669634	1.51372	FOXN1.p2	NM_008298|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	AK049963|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	AK145963|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	AK083046|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	AK167139|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	AK167212|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	AF055664|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	BC057876|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	BC158024|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1
mm9_v1_chr4_+_43455122_43455148	1.50846	FOXN1.p2	BC099699|Tesk1|21754|testis specific protein kinase 1	NM_011571|Tesk1|21754|testis specific protein kinase 1
mm9_v1_chr4_+_155266340_155266446	1.50002	FOXN1.p2	BC098196|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	BC025556|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm9_v1_chr15_-_64753721_64753861	1.49899	FOXN1.p2	U85021|Adcy8|11514|adenylate cyclase 8	BC094231|Adcy8|11514|adenylate cyclase 8	AK163443|Adcy8|11514|adenylate cyclase 8	AK138244|Adcy8|11514|adenylate cyclase 8	NM_009623|Adcy8|11514|adenylate cyclase 8
mm9_v1_chr7_-_125591493_125591732	1.49574	FOXN1.p2	AK144560|Syt17|110058|synaptotagmin XVII	AK145293|Syt17|110058|synaptotagmin XVII
mm9_v1_chr9_-_85220730_85220905	1.47209	FOXN1.p2	NM_001160378|Fam46a|212943|family with sequence similarity 46, member A	AK135132|Fam46a|212943|family with sequence similarity 46, member A	NM_001160379|Fam46a|212943|family with sequence similarity 46, member A
mm9_v1_chr17_-_37088436_37088450	1.46993	FOXN1.p2	EF528576|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm9_v1_chr12_-_88488272_88488550	1.46525	FOXN1.p2	AK043713|Pomt2|217734|protein-O-mannosyltransferase 2	AK050915|Pomt2|217734|protein-O-mannosyltransferase 2	BC079589|Pomt2|217734|protein-O-mannosyltransferase 2	BC052045|Pomt2|217734|protein-O-mannosyltransferase 2	BC062965|Pomt2|217734|protein-O-mannosyltransferase 2	AY090482|Pomt2|217734|protein-O-mannosyltransferase 2	AF246235|Pomt2|217734|protein-O-mannosyltransferase 2	AK043573|Pomt2|217734|protein-O-mannosyltransferase 2
mm9_v1_chr1_-_75260687_75260787	1.4639	FOXN1.p2	U11812|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	BC068165|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	AK220467|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	AK163141|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	DQ832283|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	AK076223|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	AK139398|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	NM_008985|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	AK041296|Ptprn|19275|protein tyrosine phosphatase, receptor type, N
mm9_v1_chr2_+_131317581_131317728	1.45334	FOXN1.p2	NM_001177833|Smox|228608|spermine oxidase	NM_001177834|Smox|228608|spermine oxidase	NM_001177835|Smox|228608|spermine oxidase	NM_001177836|Smox|228608|spermine oxidase	NM_001177837|Smox|228608|spermine oxidase	NM_001177838|Smox|228608|spermine oxidase	NM_001177839|Smox|228608|spermine oxidase	NM_001177840|Smox|228608|spermine oxidase	NM_145533|Smox|228608|spermine oxidase	AK143129|Smox|228608|spermine oxidase	AK159275|Smox|228608|spermine oxidase	AK159372|Smox|228608|spermine oxidase	AJ567473|Smox|228608|spermine oxidase	AJ567474|Smox|228608|spermine oxidase	AJ567475|Smox|228608|spermine oxidase	AJ567476|Smox|228608|spermine oxidase	AJ567477|Smox|228608|spermine oxidase	AJ567478|Smox|228608|spermine oxidase	AJ567479|Smox|228608|spermine oxidase	AJ567480|Smox|228608|spermine oxidase	BC004831|Smox|228608|spermine oxidase	AK166350|Smox|228608|spermine oxidase	AF495851|Smox|228608|spermine oxidase	AF495852|Smox|228608|spermine oxidase	AF495853|Smox|228608|spermine oxidase
mm9_v1_chr9_-_100446544_100446556	1.41986	FOXN1.p2	AF043259|Nck1|17973|non-catalytic region of tyrosine kinase adaptor protein 1
mm9_v1_chr1_+_59969845_59969868	1.41681	FOXN1.p2	AK154812|Fam117b|72750|family with sequence similarity 117, member B	NM_001037725|Fam117b|72750|family with sequence similarity 117, member B
mm9_v1_chr13_+_55724355_55724380	1.40871	FOXN1.p2	AK002895|Caml|12328|calcium modulating ligand	NM_007596|Caml|12328|calcium modulating ligand
mm9_v1_chr9_-_86775282_86775289	1.40806	FOXN1.p2	BC052454|Snap91|20616|synaptosomal-associated protein 91
mm9_v1_chr15_-_79604806_79604924	1.4074	FOXN1.p2	BC005426|Dnalc4|54152|dynein, axonemal, light chain 4	AK002657|Dnalc4|54152|dynein, axonemal, light chain 4	AB010031|Dnalc4|54152|dynein, axonemal, light chain 4	AK132061|Dnalc4|54152|dynein, axonemal, light chain 4	NM_017470|Dnalc4|54152|dynein, axonemal, light chain 4
mm9_v1_chr12_-_71328622_71328669	1.40645	FOXN1.p2	AK145989|Pygl|110095|liver glycogen phosphorylase	NM_133198|Pygl|110095|liver glycogen phosphorylase
mm9_v1_chr18_-_10610315_10610349	1.40574	FOXN1.p2	AK145333|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	NM_001081222|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm9_v1_chrX_-_50973482_50973619	1.4041	FOXN1.p2	AK003646|Cxx1b|553127|CAAX box 1 homolog B (human)	BC029838|Cxx1b|553127|CAAX box 1 homolog B (human)	NM_001018063|Cxx1b|553127|CAAX box 1 homolog B (human)
mm9_v1_chr12_+_112997057_112997169	1.40189	FOXN1.p2	NM_001025360|Klc1|16593|kinesin light chain 1	NM_001081959|Klc1|16593|kinesin light chain 1	NM_008450|Klc1|16593|kinesin light chain 1	AK031309|Klc1|16593|kinesin light chain 1	AF055665|Klc1|16593|kinesin light chain 1
mm9_v1_chr1_+_129765349_129765386	1.38799	FOXN1.p2	NM_178690|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK172881|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK035603|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK076399|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK080432|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK134604|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK164523|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK170768|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	BC046297|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK076244|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1
mm9_v1_chrX_+_91480268_91480342	1.38073	FOXN1.p2	AK081546|Klhl15|236904|kelch-like 15 (Drosophila)	NM_001039059|Klhl15|236904|kelch-like 15 (Drosophila)	NM_001039060|Klhl15|236904|kelch-like 15 (Drosophila)	NM_001039061|Klhl15|236904|kelch-like 15 (Drosophila)	NM_153165|Klhl15|236904|kelch-like 15 (Drosophila)	AK169500|Klhl15|236904|kelch-like 15 (Drosophila)	AK030432|Klhl15|236904|kelch-like 15 (Drosophila)	AK078112|Klhl15|236904|kelch-like 15 (Drosophila)	BC036978|Klhl15|236904|kelch-like 15 (Drosophila)
mm9_v1_chr17_+_6106829_6106853	1.36617	FOXN1.p2	NM_001103181|Tulp4|68842|tubby like protein 4
mm9_v1_chr7_+_86644936_86645002	1.36181	FOXN1.p2	AK032343|AI854517|101694|expressed sequence AI854517
mm9_v1_chr8_-_112217133_112217143	1.35358	FOXN1.p2	BC039052|2400003C14Rik|71955|RIKEN cDNA 2400003C14 gene
mm9_v1_chr11_+_75401554_75401692	1.34559	FOXN1.p2	AK144618|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152089|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK153569|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK167760|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152874|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK165659|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168720|Pitpna|18738|phosphatidylinositol transfer protein, alpha	U96725|Pitpna|18738|phosphatidylinositol transfer protein, alpha	NM_008850|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK149745|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK151496|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168187|Pitpna|18738|phosphatidylinositol transfer protein, alpha	BC056171|Pitpna|18738|phosphatidylinositol transfer protein, alpha
mm9_v1_chrX_-_153929935_153930011	1.34315	FOXN1.p2	AK017775|Sms|20603|spermine synthase	Y09419|Sms|20603|spermine synthase	BC046623|Sms|20603|spermine synthase	AF031486|Sms|20603|spermine synthase	AK049787|Sms|20603|spermine synthase	AK160637|Sms|20603|spermine synthase	AK149929|Sms|20603|spermine synthase	AK002687|Sms|20603|spermine synthase	AK049780|Sms|20603|spermine synthase	AK136798|Sms|20603|spermine synthase	AK011542|Sms|20603|spermine synthase	AK160659|Sms|20603|spermine synthase	NM_009214|Sms|20603|spermine synthase	AK166665|Sms|20603|spermine synthase
mm9_v1_chr16_-_45724422_45724643	1.33937	FOXN1.p2	BC043027|Tagln3|56370|transgelin 3	AB031291|Tagln3|56370|transgelin 3	AK013484|Tagln3|56370|transgelin 3	BC055338|Tagln3|56370|transgelin 3	NM_019754|Tagln3|56370|transgelin 3
mm9_v1_chrX_+_7339786_7339905	1.33383	FOXN1.p2	NM_001105196|Tcfe3|209446|transcription factor E3	NM_172472|Tcfe3|209446|transcription factor E3	AK139756|Tcfe3|209446|transcription factor E3	BC056358|Tcfe3|209446|transcription factor E3	BC063047|Tcfe3|209446|transcription factor E3	AK144751|Tcfe3|209446|transcription factor E3	AK145832|Tcfe3|209446|transcription factor E3	AK145029|Tcfe3|209446|transcription factor E3	AK144657|Tcfe3|209446|transcription factor E3	AK154690|Tcfe3|209446|transcription factor E3	BC051568|Tcfe3|209446|transcription factor E3	AK089762|Tcfe3|209446|transcription factor E3	AK159162|Tcfe3|209446|transcription factor E3	BC032963|Tcfe3|209446|transcription factor E3
mm9_v1_chr8_-_124999921_124999977	1.32647	FOXN1.p2	AK079883|Rnf166|68718|ring finger protein 166	BC131924|Rnf166|68718|ring finger protein 166	BC132281|Rnf166|68718|ring finger protein 166	AK151813|Rnf166|68718|ring finger protein 166	NM_001033142|Rnf166|68718|ring finger protein 166
mm9_v1_chr10_+_59740430_59740512	1.32519	FOXN1.p2	AK159108|Psap|19156|prosaposin	AK148152|Psap|19156|prosaposin	S71616|Psap|19156|prosaposin	AK161313|Psap|19156|prosaposin	AK159457|Psap|19156|prosaposin	AK152819|Psap|19156|prosaposin	AK217017|Psap|19156|prosaposin	AK148150|Psap|19156|prosaposin	AK152319|Psap|19156|prosaposin	AK159221|Psap|19156|prosaposin	AK152408|Psap|19156|prosaposin	AK167198|Psap|19156|prosaposin	AK145607|Psap|19156|prosaposin	AK148545|Psap|19156|prosaposin	AK150331|Psap|19156|prosaposin	AK151234|Psap|19156|prosaposin	AK151525|Psap|19156|prosaposin	AK151529|Psap|19156|prosaposin	AK151852|Psap|19156|prosaposin	AK151907|Psap|19156|prosaposin	AK151943|Psap|19156|prosaposin	AK152134|Psap|19156|prosaposin	AK152505|Psap|19156|prosaposin	AK152557|Psap|19156|prosaposin	AK152605|Psap|19156|prosaposin	AK159414|Psap|19156|prosaposin	AK159589|Psap|19156|prosaposin	AK159728|Psap|19156|prosaposin	AK159862|Psap|19156|prosaposin	AK159936|Psap|19156|prosaposin	AK160019|Psap|19156|prosaposin	AK160049|Psap|19156|prosaposin	AK160877|Psap|19156|prosaposin	AK166879|Psap|19156|prosaposin	AK167099|Psap|19156|prosaposin	AK167252|Psap|19156|prosaposin	AK093881|Psap|19156|prosaposin	AK152355|Psap|19156|prosaposin	AK159333|Psap|19156|prosaposin	AK167418|Psap|19156|prosaposin	AK088369|Psap|19156|prosaposin	AK135637|Psap|19156|prosaposin	AK145802|Psap|19156|prosaposin	AK150645|Psap|19156|prosaposin	AK151034|Psap|19156|prosaposin	AK151230|Psap|19156|prosaposin	AK151251|Psap|19156|prosaposin	AK151875|Psap|19156|prosaposin	AK151891|Psap|19156|prosaposin	AK152126|Psap|19156|prosaposin	AK152280|Psap|19156|prosaposin	AK153404|Psap|19156|prosaposin	AK159164|Psap|19156|prosaposin	AK159167|Psap|19156|prosaposin	AK159198|Psap|19156|prosaposin	AK159244|Psap|19156|prosaposin	AK159266|Psap|19156|prosaposin	AK159341|Psap|19156|prosaposin	AK159384|Psap|19156|prosaposin	AK159451|Psap|19156|prosaposin	AK159487|Psap|19156|prosaposin	AK159492|Psap|19156|prosaposin	AK159510|Psap|19156|prosaposin	AK159528|Psap|19156|prosaposin	AK159530|Psap|19156|prosaposin	AK159604|Psap|19156|prosaposin	AK159634|Psap|19156|prosaposin	AK159638|Psap|19156|prosaposin	AK159657|Psap|19156|prosaposin	AK159664|Psap|19156|prosaposin	AK159685|Psap|19156|prosaposin	AK159692|Psap|19156|prosaposin	AK159709|Psap|19156|prosaposin	AK159720|Psap|19156|prosaposin	AK159840|Psap|19156|prosaposin	AK159861|Psap|19156|prosaposin	AK159877|Psap|19156|prosaposin	AK159910|Psap|19156|prosaposin	AK159915|Psap|19156|prosaposin	AK159982|Psap|19156|prosaposin	AK160015|Psap|19156|prosaposin	AK160021|Psap|19156|prosaposin	AK160024|Psap|19156|prosaposin	AK160046|Psap|19156|prosaposin	AK160073|Psap|19156|prosaposin	AK160108|Psap|19156|prosaposin	AK166700|Psap|19156|prosaposin	AK166707|Psap|19156|prosaposin	AK166811|Psap|19156|prosaposin	AK166849|Psap|19156|prosaposin	AK166909|Psap|19156|prosaposin	AK166920|Psap|19156|prosaposin	AK166946|Psap|19156|prosaposin	AK166959|Psap|19156|prosaposin	AK166984|Psap|19156|prosaposin	AK167014|Psap|19156|prosaposin	AK167025|Psap|19156|prosaposin	AK167073|Psap|19156|prosaposin	AK167108|Psap|19156|prosaposin	AK167111|Psap|19156|prosaposin	AK167147|Psap|19156|prosaposin	AK167213|Psap|19156|prosaposin	AK167237|Psap|19156|prosaposin	BC141089|Psap|19156|prosaposin	BC145359|Psap|19156|prosaposin	U27340|Psap|19156|prosaposin	AK089998|Psap|19156|prosaposin	AK151173|Psap|19156|prosaposin	AK152117|Psap|19156|prosaposin	AK159427|Psap|19156|prosaposin	AK159463|Psap|19156|prosaposin	AK159994|Psap|19156|prosaposin	AK166744|Psap|19156|prosaposin	AK167243|Psap|19156|prosaposin	AK167719|Psap|19156|prosaposin	AK170416|Psap|19156|prosaposin	AK159722|Psap|19156|prosaposin	S36200|Psap|19156|prosaposin
mm9_v1_chr3_-_33042050_33042124	1.32474	FOXN1.p2	AK034497|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr19_-_14672540_14672588	1.32097	FOXN1.p2	AK134989|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)	BC086631|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chr14_-_24823370_24823426	1.31762	FOXN1.p2	AK142894|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	BC065068|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	NM_010610|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
mm9_v1_chr11_-_51670897_51671154	1.31013	FOXN1.p2	AK147453|Phf15|76901|PHD finger protein 15	AK129097|Phf15|76901|PHD finger protein 15	NM_199299|Phf15|76901|PHD finger protein 15	AK004823|Phf15|76901|PHD finger protein 15
mm9_v1_chr18_+_33098914_33099011	1.30607	FOXN1.p2	AK043114|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	X58995|Camk4|12326|calcium/calmodulin-dependent protein kinase IV
mm9_v1_chr9_+_14664653_14664697	1.30452	FOXN1.p2	AK035356|Gpr83|14608|G protein-coupled receptor 83	AK041527|Gpr83|14608|G protein-coupled receptor 83	AK081276|Gpr83|14608|G protein-coupled receptor 83	M80481|Gpr83|14608|G protein-coupled receptor 83	NM_010287|Gpr83|14608|G protein-coupled receptor 83
mm9_v1_chr8_+_74094553_74094637	1.30366	FOXN1.p2	AK138548|Slc27a1|26457|solute carrier family 27 (fatty acid transporter), member 1	AK155185|Slc27a1|26457|solute carrier family 27 (fatty acid transporter), member 1	U15976|Slc27a1|26457|solute carrier family 27 (fatty acid transporter), member 1	AK164798|Slc27a1|26457|solute carrier family 27 (fatty acid transporter), member 1
mm9_v1_chrX_-_71674499_71674499	1.29309	FOXN1.p2	BC075663|G6pdx|14381|glucose-6-phosphate dehydrogenase X-linked	NM_008062|G6pdx|14381|glucose-6-phosphate dehydrogenase X-linked
mm9_v1_chr10_+_59569084_59569159	1.2925	FOXN1.p2	AK140483|Spock2|94214|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	AK162941|Spock2|94214|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2
mm9_v1_chr5_-_121161656_121161677	1.288	FOXN1.p2	AK169455|Dtx1|14357|deltex 1 homolog (Drosophila)	NM_008052|Dtx1|14357|deltex 1 homolog (Drosophila)
mm9_v1_chr11_+_101017197_101017233	1.28454	FOXN1.p2	NM_134028|Tubg2|103768|tubulin, gamma 2	BC019652|Tubg2|103768|tubulin, gamma 2	BC078446|Tubg2|103768|tubulin, gamma 2
mm9_v1_chr11_-_115992196_115992441	1.28299	FOXN1.p2	BC118954|Trim65|338364|tripartite motif-containing 65	BC118955|Trim65|338364|tripartite motif-containing 65	AK028857|Trim65|338364|tripartite motif-containing 65	BC057094|Trim65|338364|tripartite motif-containing 65	AK050080|Trim65|338364|tripartite motif-containing 65	AK047439|Trim65|338364|tripartite motif-containing 65	AK079982|Trim65|338364|tripartite motif-containing 65	NM_178802|Trim65|338364|tripartite motif-containing 65
mm9_v1_chr18_-_10610047_10610154	1.27866	FOXN1.p2	AK045656|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	AK139549|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	BC076613|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	AK040576|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	AK049589|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	AK145870|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	AK020858|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm9_v1_chr13_-_92901406_92901450	1.26987	FOXN1.p2	NM_009027|Rasgrf2|19418|RAS protein-specific guanine nucleotide-releasing factor 2	U67326|Rasgrf2|19418|RAS protein-specific guanine nucleotide-releasing factor 2
mm9_v1_chr8_-_112217144_112217225	1.26735	FOXN1.p2	AK161899|2400003C14Rik|71955|RIKEN cDNA 2400003C14 gene	AK088192|2400003C14Rik|71955|RIKEN cDNA 2400003C14 gene	AK050468|2400003C14Rik|71955|RIKEN cDNA 2400003C14 gene	AK152830|2400003C14Rik|71955|RIKEN cDNA 2400003C14 gene	BC017605|2400003C14Rik|71955|RIKEN cDNA 2400003C14 gene	AK010262|2400003C14Rik|71955|RIKEN cDNA 2400003C14 gene	NM_028018|2400003C14Rik|71955|RIKEN cDNA 2400003C14 gene
mm9_v1_chr12_+_74686027_74686090	1.2616	FOXN1.p2	BC031121|Prkch|18755|protein kinase C, eta	NM_008856|Prkch|18755|protein kinase C, eta	D90242|Prkch|18755|protein kinase C, eta
mm9_v1_chr14_+_30791522_30791616	1.26019	FOXN1.p2	NM_027493|Actr8|56249|ARP8 actin-related protein 8 homolog (S. cerevisiae)	AK017815|Actr8|56249|ARP8 actin-related protein 8 homolog (S. cerevisiae)	AK045862|Actr8|56249|ARP8 actin-related protein 8 homolog (S. cerevisiae)	BC027281|Actr8|56249|ARP8 actin-related protein 8 homolog (S. cerevisiae)
mm9_v1_chr9_-_54407955_54407999	1.25798	FOXN1.p2	AK005347|Cib2|56506|calcium and integrin binding family member 2	AK013240|Cib2|56506|calcium and integrin binding family member 2
mm9_v1_chr14_+_32064678_32064794	1.25509	FOXN1.p2	BC050901|Bap1|104416|Brca1 associated protein 1	BC042489|Bap1|104416|Brca1 associated protein 1	AK129108|Bap1|104416|Brca1 associated protein 1	AB047820|Bap1|104416|Brca1 associated protein 1
mm9_v1_chr10_+_59568976_59569004	1.2544	FOXN1.p2	AJ278999|Spock2|94214|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	BC057324|Spock2|94214|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	NM_052994|Spock2|94214|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2
mm9_v1_chr9_+_64027101_64027115	1.24718	FOXN1.p2	NM_183316|Snapc5|330959|small nuclear RNA activating complex, polypeptide 5	BC028529|Snapc5|330959|small nuclear RNA activating complex, polypeptide 5
mm9_v1_chr3_+_146113449_146113466	1.24702	FOXN1.p2	AK008791|Ctbs|74245|chitobiase, di-N-acetyl-	DQ100384|Ctbs|74245|chitobiase, di-N-acetyl-	NM_028836|Ctbs|74245|chitobiase, di-N-acetyl-
mm9_v1_chr13_-_65214222_65214309	1.24428	FOXN1.p2	BC033469|Hiatl1|66631|hippocampus abundant transcript-like 1	AK090174|Hiatl1|66631|hippocampus abundant transcript-like 1	AK146596|Hiatl1|66631|hippocampus abundant transcript-like 1	NM_001083901|Hiatl1|66631|hippocampus abundant transcript-like 1	NM_133680|Hiatl1|66631|hippocampus abundant transcript-like 1
mm9_v1_chr12_-_99812921_99812948	1.24093	FOXN1.p2	AK019376|Kcnk10|72258|potassium channel, subfamily K, member 10
mm9_v1_chr9_-_64585461_64585539	1.23969	FOXN1.p2	AK031143|Rab11a|53869|RAB11a, member RAS oncogene family
mm9_v1_chr5_+_97426665_97426877	1.23951	FOXN1.p2	AY050249|Bmp2k|140780|BMP2 inducible kinase	NM_080708|Bmp2k|140780|BMP2 inducible kinase	AK046752|Bmp2k|140780|BMP2 inducible kinase
mm9_v1_chr7_+_26471968_26472056	1.2356	FOXN1.p2	AJ009862|Tgfb1|21803|transforming growth factor, beta 1	NM_011577|Tgfb1|21803|transforming growth factor, beta 1	AK144163|Tgfb1|21803|transforming growth factor, beta 1
mm9_v1_chr7_+_133991066_133991211	1.2298	FOXN1.p2	BC055768|Doc2a|13446|double C2, alpha	NM_010069|Doc2a|13446|double C2, alpha
mm9_v1_chr2_+_164774806_164774810	1.22636	FOXN1.p2	X72795|Mmp9|17395|matrix metallopeptidase 9
mm9_v1_chr9_+_57408729_57408820	1.22237	FOXN1.p2	AK003080|Scamp2|24044|secretory carrier membrane protein 2	AK161002|Scamp2|24044|secretory carrier membrane protein 2	NM_022813|Scamp2|24044|secretory carrier membrane protein 2	AF295402|Scamp2|24044|secretory carrier membrane protein 2	AK171766|Scamp2|24044|secretory carrier membrane protein 2	BC003452|Scamp2|24044|secretory carrier membrane protein 2	BC014751|Scamp2|24044|secretory carrier membrane protein 2
mm9_v1_chr6_+_107479719_107479841	1.2173	FOXN1.p2	AK139965|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK139355|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK164849|Lrrn1|16979|leucine rich repeat protein 1, neuronal	D45913|Lrrn1|16979|leucine rich repeat protein 1, neuronal	NM_008516|Lrrn1|16979|leucine rich repeat protein 1, neuronal	BC058701|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK160841|Lrrn1|16979|leucine rich repeat protein 1, neuronal
mm9_v1_chr10_+_79630579_79630595	1.19072	FOXN1.p2	AK014655|Cirbp|12696|cold inducible RNA binding protein	AK132584|Cirbp|12696|cold inducible RNA binding protein	D78135|Cirbp|12696|cold inducible RNA binding protein	NM_007705|Cirbp|12696|cold inducible RNA binding protein	BC075699|Cirbp|12696|cold inducible RNA binding protein
mm9_v1_chr14_-_58508974_58509153	1.18876	FOXN1.p2	AK020965|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AY668951|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK170139|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK031184|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK139216|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK140182|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK049270|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK163174|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK017158|Zdhhc20|75965|zinc finger, DHHC domain containing 20	NM_029492|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK151840|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK170017|Zdhhc20|75965|zinc finger, DHHC domain containing 20	BC019536|Zdhhc20|75965|zinc finger, DHHC domain containing 20
mm9_v1_chrX_-_72376117_72376367	1.18863	FOXN1.p2	AK188498|Mpp1|17524|membrane protein, palmitoylated	AJ627041|Mpp1|17524|membrane protein, palmitoylated	BC138314|Mpp1|17524|membrane protein, palmitoylated	BC138315|Mpp1|17524|membrane protein, palmitoylated	AK168352|Mpp1|17524|membrane protein, palmitoylated	AK152379|Mpp1|17524|membrane protein, palmitoylated	AK081829|Mpp1|17524|membrane protein, palmitoylated	AK165261|Mpp1|17524|membrane protein, palmitoylated	NM_008621|Mpp1|17524|membrane protein, palmitoylated	AK036415|Mpp1|17524|membrane protein, palmitoylated	BC013444|Mpp1|17524|membrane protein, palmitoylated	U38196|Mpp1|17524|membrane protein, palmitoylated	AK048532|Mpp1|17524|membrane protein, palmitoylated
mm9_v1_chr1_-_95531961_95532109	1.18801	FOXN1.p2	AF004934|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr19_-_36993572_36993622	1.18571	FOXN1.p2	AK029452|Fgfbp3|72514|fibroblast growth factor binding protein 3	AK011996|Fgfbp3|72514|fibroblast growth factor binding protein 3
mm9_v1_chr14_-_52898946_52899069	1.18313	FOXN1.p2	AK044202|Rab2b|76338|RAB2B, member RAS oncogene family	BC033312|Rab2b|76338|RAB2B, member RAS oncogene family	AK005230|Rab2b|76338|RAB2B, member RAS oncogene family	BC054719|Rab2b|76338|RAB2B, member RAS oncogene family	AK038393|Rab2b|76338|RAB2B, member RAS oncogene family	AK038576|Rab2b|76338|RAB2B, member RAS oncogene family	AK169657|Rab2b|76338|RAB2B, member RAS oncogene family	BC046334|Rab2b|76338|RAB2B, member RAS oncogene family	NM_172601|Rab2b|76338|RAB2B, member RAS oncogene family
mm9_v1_chr12_+_52792192_52792204	1.182	FOXN1.p2	BC053339|Ap4s1|11782|adaptor-related protein complex AP-4, sigma 1	AK005283|Ap4s1|11782|adaptor-related protein complex AP-4, sigma 1
mm9_v1_chr12_+_112997194_112997223	1.18188	FOXN1.p2	AK184188|Klc1|16593|kinesin light chain 1	AK207464|Klc1|16593|kinesin light chain 1	BC055744|Klc1|16593|kinesin light chain 1
mm9_v1_chr3_+_96439541_96439607	1.17552	FOXN1.p2	AK011709|Pex11b|18632|peroxisomal biogenesis factor 11 beta	AK082279|Pex11b|18632|peroxisomal biogenesis factor 11 beta	AK005236|Pex11b|18632|peroxisomal biogenesis factor 11 beta	BC013812|Pex11b|18632|peroxisomal biogenesis factor 11 beta	BC054414|Pex11b|18632|peroxisomal biogenesis factor 11 beta	AF093671|Pex11b|18632|peroxisomal biogenesis factor 11 beta
mm9_v1_chr5_-_84846256_84846332	1.17471	FOXN1.p2	AK089143|Epha5|13839|Eph receptor A5
mm9_v1_chr9_+_22280158_22280205	1.17143	FOXN1.p2	BC046426|Bbs9|319845|Bardet-Biedl syndrome 9 (human)	NM_178415|Bbs9|319845|Bardet-Biedl syndrome 9 (human)	NM_181316|Bbs9|319845|Bardet-Biedl syndrome 9 (human)	AK166297|Bbs9|319845|Bardet-Biedl syndrome 9 (human)	AK086114|Bbs9|319845|Bardet-Biedl syndrome 9 (human)	AK144730|Bbs9|319845|Bardet-Biedl syndrome 9 (human)	AK028200|Bbs9|319845|Bardet-Biedl syndrome 9 (human)
mm9_v1_chr9_+_110148568_110148708	1.16971	FOXN1.p2	AF461091|Cspg5|29873|chondroitin sulfate proteoglycan 5
mm9_v1_chr17_+_36003527_36003630	1.16683	FOXN1.p2	NM_175242|2310014H01Rik|76448|RIKEN cDNA 2310014H01 gene	AK051656|2310014H01Rik|76448|RIKEN cDNA 2310014H01 gene
mm9_v1_chr9_-_54407862_54407915	1.16665	FOXN1.p2	AB016080|Cib2|56506|calcium and integrin binding family member 2	NM_019686|Cib2|56506|calcium and integrin binding family member 2	BC005739|Cib2|56506|calcium and integrin binding family member 2
mm9_v1_chr11_+_29273673_29273774	1.16247	FOXN1.p2	AK051140|Ccdc88a|108686|coiled coil domain containing 88A	NM_176841|Ccdc88a|108686|coiled coil domain containing 88A
mm9_v1_chr7_+_28232980_28232996	1.15811	FOXN1.p2	BC027279|Blvrb|233016|biliverdin reductase B (flavin reductase (NADPH))	NM_144923|Blvrb|233016|biliverdin reductase B (flavin reductase (NADPH))
mm9_v1_chrX_-_50946805_50946943	1.14543	FOXN1.p2	BC003436|Cxx1a|66158|CAAX box 1 homolog A (human)	AK002323|Cxx1a|66158|CAAX box 1 homolog A (human)	NM_024170|Cxx1a|66158|CAAX box 1 homolog A (human)
mm9_v1_chr12_+_33063653_33063723	1.14009	FOXN1.p2	NM_001162903|2010109K11Rik|72123|RIKEN cDNA 2010109K11 gene
mm9_v1_chr8_-_108535317_108535385	1.13812	FOXN1.p2	AK010396|Ddx28|71986|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	AK163480|Ddx28|71986|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	BC058568|Ddx28|71986|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	BC120556|Ddx28|71986|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	BC120582|Ddx28|71986|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	NM_028038|Ddx28|71986|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28
mm9_v1_chr12_-_71212906_71213013	1.13645	FOXN1.p2	BC137789|Nin|18080|ninein	BC144913|Nin|18080|ninein	BC144914|Nin|18080|ninein	AK129394|Nin|18080|ninein	NM_008697|Nin|18080|ninein	U40342|Nin|18080|ninein	AK162150|Nin|18080|ninein	AK167264|Nin|18080|ninein
mm9_v1_chr10_-_53795485_53795553	1.13341	FOXN1.p2	AK186378|Man1a|17155|mannosidase 1, alpha	BC015265|Man1a|17155|mannosidase 1, alpha	AK028996|Man1a|17155|mannosidase 1, alpha	AK042371|Man1a|17155|mannosidase 1, alpha	AK148407|Man1a|17155|mannosidase 1, alpha	AK154820|Man1a|17155|mannosidase 1, alpha	AK171841|Man1a|17155|mannosidase 1, alpha	AK043932|Man1a|17155|mannosidase 1, alpha	AK172376|Man1a|17155|mannosidase 1, alpha	AK172667|Man1a|17155|mannosidase 1, alpha
mm9_v1_chr16_+_49699314_49699432	1.1334	FOXN1.p2	DQ266091|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	AF274590|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	AK047217|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	NM_028680|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	AK014731|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	BC138143|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	BC138144|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)
mm9_v1_chr6_+_55402021_55402057	1.12874	FOXN1.p2	AK147291|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	BC067039|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1
mm9_v1_chr7_-_54387695_54387755	1.12805	FOXN1.p2	BC057339|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5	BC051975|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5	AK038416|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5
mm9_v1_chr14_-_31166671_31166671	1.12722	FOXN1.p2	AK147415|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit	NM_001083616|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm9_v1_chr7_-_120512849_120512864	1.1212	FOXN1.p2	BC050781|Btbd10|68815|BTB (POZ) domain containing 10	NM_133700|Btbd10|68815|BTB (POZ) domain containing 10
mm9_v1_chr11_+_115048783_115048880	1.12003	FOXN1.p2	NM_001033393|Tmem104|320534|transmembrane protein 104	AK171314|Tmem104|320534|transmembrane protein 104	AK155041|Tmem104|320534|transmembrane protein 104	AK040894|Tmem104|320534|transmembrane protein 104	AK171457|Tmem104|320534|transmembrane protein 104	AK167098|Tmem104|320534|transmembrane protein 104	AK049868|Tmem104|320534|transmembrane protein 104	BC140976|Tmem104|320534|transmembrane protein 104
mm9_v1_chr5_-_147032490_147032561	1.11881	FOXN1.p2	AK017576|Rnf6|74132|ring finger protein (C3H2C3 type) 6	AK029912|Rnf6|74132|ring finger protein (C3H2C3 type) 6	AK150269|Rnf6|74132|ring finger protein (C3H2C3 type) 6	AK152106|Rnf6|74132|ring finger protein (C3H2C3 type) 6
mm9_v1_chr11_+_115015491_115015512	1.11866	FOXN1.p2	BC050757|Rab37|58222|RAB37, member of RAS oncogene family	NM_021411|Rab37|58222|RAB37, member of RAS oncogene family	AK040216|Rab37|58222|RAB37, member of RAS oncogene family	AK039716|Rab37|58222|RAB37, member of RAS oncogene family	AK050483|Rab37|58222|RAB37, member of RAS oncogene family	BC128020|Rab37|58222|RAB37, member of RAS oncogene family	AB232633|Rab37|58222|RAB37, member of RAS oncogene family	AF233582|Rab37|58222|RAB37, member of RAS oncogene family
mm9_v1_chr17_+_74888823_74888973	1.11752	FOXN1.p2	AK166347|Yipf4|67864|Yip1 domain family, member 4	AK009618|Yipf4|67864|Yip1 domain family, member 4	AK083301|Yipf4|67864|Yip1 domain family, member 4	NM_026417|Yipf4|67864|Yip1 domain family, member 4	AK017721|Yipf4|67864|Yip1 domain family, member 4	AK017722|Yipf4|67864|Yip1 domain family, member 4	AK159227|Yipf4|67864|Yip1 domain family, member 4	BC003936|Yipf4|67864|Yip1 domain family, member 4
mm9_v1_chr19_+_5637712_5637737	1.11277	FOXN1.p2	BC003818|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)
mm9_v1_chr11_-_5641147_5641184	1.11193	FOXN1.p2	AK166495|Urgcp|72046|upregulator of cell proliferation	AK033577|Urgcp|72046|upregulator of cell proliferation	NM_178623|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr7_-_28181562_28181590	1.11133	FOXN1.p2	AB055621|Spnb4|80297|spectrin beta 4
mm9_v1_chr1_-_163806710_163806814	1.10979	FOXN1.p2	BC138379|AI848100|226551|expressed sequence AI848100	AK171856|AI848100|226551|expressed sequence AI848100	NM_172645|AI848100|226551|expressed sequence AI848100
mm9_v1_chr6_+_88852457_88852516	1.10854	FOXN1.p2	AK164913|Tpra1|24100|transmembrane protein, adipocyte asscociated 1
mm9_v1_chr9_-_106101461_106101607	1.10541	FOXN1.p2	AK046387|Ppm1m|67905|protein phosphatase 1M	BC058248|Ppm1m|67905|protein phosphatase 1M	AK013149|Ppm1m|67905|protein phosphatase 1M	NM_026447|Ppm1m|67905|protein phosphatase 1M	AB474373|Ppm1m|67905|protein phosphatase 1M	AK087999|Ppm1m|67905|protein phosphatase 1M
mm9_v1_chr11_+_74644441_74644466	1.10121	FOXN1.p2	AK147933|Mnt|17428|max binding protein
mm9_v1_chr10_-_79600131_79600131	1.09446	FOXN1.p2	BC052075|Dos|100503659|downstream of Stk11	NM_001195268|Dos|100503659|downstream of Stk11
mm9_v1_chr5_+_9266131_9266133	1.08967	FOXN1.p2	AK134808|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK161902|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene
mm9_v1_chr18_-_39649499_39649545	1.08937	FOXN1.p2	AK156323|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr2_-_120178819_120178881	1.08657	FOXN1.p2	BC007479|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281050|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281051|Vps39|269338|vacuolar protein sorting 39 (yeast)	AB028844|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK141424|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK038824|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK042253|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK154103|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK170831|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK171008|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK159889|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK160109|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK084743|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_147153|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_178851|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK140041|Vps39|269338|vacuolar protein sorting 39 (yeast)
mm9_v1_chr2_-_53937785_53937964	1.07901	FOXN1.p2	BC030065|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	AK014769|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	AB043586|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	AK010465|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	NM_023396|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate
mm9_v1_chr4_+_56815193_56815243	1.06765	FOXN1.p2	NM_001081420|BC026590|230234|cDNA sequence BC026590	AK043588|BC026590|230234|cDNA sequence BC026590	BC026590|BC026590|230234|cDNA sequence BC026590
mm9_v1_chr19_-_45309725_45309963	1.06282	FOXN1.p2	AB108497|Lbx1|16814|ladybird homeobox homolog 1 (Drosophila)	NM_010691|Lbx1|16814|ladybird homeobox homolog 1 (Drosophila)	BC119177|Lbx1|16814|ladybird homeobox homolog 1 (Drosophila)	BC120586|Lbx1|16814|ladybird homeobox homolog 1 (Drosophila)
mm9_v1_chr7_-_133942767_133942800	1.0579	FOXN1.p2	NM_007438|Aldoa|11674|aldolase A, fructose-bisphosphate
mm9_v1_chr17_+_73186929_73186985	1.05708	FOXN1.p2	BC085109|Ypel5|383295|yippee-like 5 (Drosophila)
mm9_v1_chr7_+_90780446_90780552	1.04864	FOXN1.p2	AK077328|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK142503|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK080060|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK085852|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK009980|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	BC031733|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK158178|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	BC058226|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	NM_023377|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AY007808|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AF480302|Stard5|170460|StAR-related lipid transfer (START) domain containing 5
mm9_v1_chr11_+_21472279_21472320	1.04794	FOXN1.p2	AK083042|Wdpcp|216560|WD repeat containing planar cell polarity effector	NM_145425|Wdpcp|216560|WD repeat containing planar cell polarity effector	AK082370|Wdpcp|216560|WD repeat containing planar cell polarity effector	AK043672|Wdpcp|216560|WD repeat containing planar cell polarity effector	BC141166|Wdpcp|216560|WD repeat containing planar cell polarity effector	AF424701|Wdpcp|216560|WD repeat containing planar cell polarity effector
mm9_v1_chr1_-_84281018_84281160	1.044	FOXN1.p2	AK035542|Pid1|98496|phosphotyrosine interaction domain containing 1	AK083256|Pid1|98496|phosphotyrosine interaction domain containing 1	AK150971|Pid1|98496|phosphotyrosine interaction domain containing 1
mm9_v1_chr6_-_113451811_113451890	1.03964	FOXN1.p2	BC058349|Prrt3|210673|proline-rich transmembrane protein 3	NM_172487|Prrt3|210673|proline-rich transmembrane protein 3	AK136854|Prrt3|210673|proline-rich transmembrane protein 3	AK045491|Prrt3|210673|proline-rich transmembrane protein 3	AK045678|Prrt3|210673|proline-rich transmembrane protein 3
mm9_v1_chr16_-_52452766_52452798	1.03708	FOXN1.p2	AY644766|Alcam|11658|activated leukocyte cell adhesion molecule	BC027280|Alcam|11658|activated leukocyte cell adhesion molecule	AB003026|Alcam|11658|activated leukocyte cell adhesion molecule
mm9_v1_chr13_-_95992994_95993009	1.03671	FOXN1.p2	AK043680|Pde8b|218461|phosphodiesterase 8B	AK045991|Pde8b|218461|phosphodiesterase 8B	NM_001170669|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr10_-_114238419_114238425	1.03604	FOXN1.p2	BC032288|Trhde|237553|TRH-degrading enzyme	AK085724|Trhde|237553|TRH-degrading enzyme	NM_146241|Trhde|237553|TRH-degrading enzyme
mm9_v1_chr1_-_80755061_80755129	1.03429	FOXN1.p2	AK172588|Dock10|210293|dedicator of cytokinesis 10	AK171746|Dock10|210293|dedicator of cytokinesis 10	AK042052|Dock10|210293|dedicator of cytokinesis 10	AK138722|Dock10|210293|dedicator of cytokinesis 10	NM_175291|Dock10|210293|dedicator of cytokinesis 10
mm9_v1_chr12_-_71328615_71328621	1.03376	FOXN1.p2	AK041189|Pygl|110095|liver glycogen phosphorylase	AK140321|Pygl|110095|liver glycogen phosphorylase
mm9_v1_chr17_-_34164996_34165023	1.03251	FOXN1.p2	BC086927|H2-Ke6|14979|H2-K region expressed gene 6	NM_013543|H2-Ke6|14979|H2-K region expressed gene 6
mm9_v1_chr13_-_43576328_43576357	1.02755	FOXN1.p2	AF006465|Ranbp9|56705|RAN binding protein 9	NM_019930|Ranbp9|56705|RAN binding protein 9
mm9_v1_chr3_-_108365251_108365316	1.02721	FOXN1.p2	AK046697|Tmem167b|67495|transmembrane protein 167B	BC050932|Tmem167b|67495|transmembrane protein 167B	AK008415|Tmem167b|67495|transmembrane protein 167B	BC055449|Tmem167b|67495|transmembrane protein 167B
mm9_v1_chr8_+_72839642_72839751	1.02453	FOXN1.p2	AK053885|Lass1|93898|LAG1 homolog, ceramide synthase 1	NM_001163282|Gdf1|14559|growth differentiation factor 1	NM_138647|Lass1|93898|LAG1 homolog, ceramide synthase 1	M62301|Gdf1|14559|growth differentiation factor 1	AK162823|Gdf1|14559|growth differentiation factor 1	BC056973|Gdf1|14559|growth differentiation factor 1	BC094351|Gdf1|14559|growth differentiation factor 1	BC132318|Lass1|93898|LAG1 homolog, ceramide synthase 1
mm9_v1_chr4_+_144483110_144483188	1.02344	FOXN1.p2	AK087137|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3
mm9_v1_chr9_-_96918641_96918773	1.02189	FOXN1.p2	BC055705|Spsb4|211949|splA/ryanodine receptor domain and SOCS box containing 4	AK142195|Spsb4|211949|splA/ryanodine receptor domain and SOCS box containing 4	AF403039|Spsb4|211949|splA/ryanodine receptor domain and SOCS box containing 4	NM_145134|Spsb4|211949|splA/ryanodine receptor domain and SOCS box containing 4
mm9_v1_chrX_-_137077639_137077729	1.01763	FOXN1.p2	BC028813|Tsc22d3|14605|TSC22 domain family, member 3	AF201288|Tsc22d3|14605|TSC22 domain family, member 3	AF024519|Tsc22d3|14605|TSC22 domain family, member 3	AK083389|Tsc22d3|14605|TSC22 domain family, member 3	NM_010286|Tsc22d3|14605|TSC22 domain family, member 3	AK144196|Tsc22d3|14605|TSC22 domain family, member 3
mm9_v1_chr2_+_11093936_11094008	1.01714	FOXN1.p2	AK037664|Prkcq|18761|protein kinase C, theta	D11091|Prkcq|18761|protein kinase C, theta	NM_008859|Prkcq|18761|protein kinase C, theta
mm9_v1_chr4_-_41516463_41516600	1.01603	FOXN1.p2	BC147810|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC147808|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC147834|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC147836|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC172167|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC172173|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	AK009522|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	AK134737|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	NM_001159583|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	NM_027993|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene
mm9_v1_chr10_+_80599005_80599015	1.01403	FOXN1.p2	BC024815|Zbtb7a|16969|zinc finger and BTB domain containing 7a	NM_010731|Zbtb7a|16969|zinc finger and BTB domain containing 7a
mm9_v1_chr1_-_38954933_38955026	1.01321	FOXN1.p2	BC056956|Chst10|98388|carbohydrate sulfotransferase 10	AK047378|Chst10|98388|carbohydrate sulfotransferase 10	NM_145142|Chst10|98388|carbohydrate sulfotransferase 10	AK050676|Chst10|98388|carbohydrate sulfotransferase 10
mm9_v1_chrX_+_136145155_136145229	1.01059	FOXN1.p2	AB041548|Rnf128|66889|ring finger protein 128	AK004847|Rnf128|66889|ring finger protein 128	AK018582|Rnf128|66889|ring finger protein 128	NM_023270|Rnf128|66889|ring finger protein 128	AK146266|Rnf128|66889|ring finger protein 128	AY112656|Rnf128|66889|ring finger protein 128	AK167031|Rnf128|66889|ring finger protein 128	BC010477|Rnf128|66889|ring finger protein 128	AK008312|Rnf128|66889|ring finger protein 128
mm9_v1_chr4_-_128798481_128798555	1.00714	FOXN1.p2	BC049607|Hpca|15444|hippocalcin	NM_010471|Hpca|15444|hippocalcin	AK002992|Hpca|15444|hippocalcin
mm9_v1_chr7_-_149558139_149558173	1.00144	FOXN1.p2	BC049666|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	AK045822|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	AK163573|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	NM_177265|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	AK031961|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene
mm9_v1_chr5_+_98758322_98758388	0.996774	FOXN1.p2	BC049770|1700007G11Rik|75784|RIKEN cDNA 1700007G11 gene	NM_001024614|1700007G11Rik|75784|RIKEN cDNA 1700007G11 gene	AK005711|1700007G11Rik|75784|RIKEN cDNA 1700007G11 gene
mm9_v1_chr7_-_74517624_74517743	0.995487	FOXN1.p2	AK132678|Mef2a|17258|myocyte enhancer factor 2A	BC019116|Mef2a|17258|myocyte enhancer factor 2A	BC096598|Mef2a|17258|myocyte enhancer factor 2A	BC061128|Mef2a|17258|myocyte enhancer factor 2A	AK052385|Mef2a|17258|myocyte enhancer factor 2A	AK153751|Mef2a|17258|myocyte enhancer factor 2A	NM_001033713|Mef2a|17258|myocyte enhancer factor 2A
mm9_v1_chr2_+_120229988_120230073	0.99181	FOXN1.p2	BC058197|Ganc|76051|glucosidase, alpha; neutral C
mm9_v1_chr4_-_137952372_137952372	0.991352	FOXN1.p2	AK134570|Fam43b|625638|family with sequence similarity 43, member B	NM_001081672|Fam43b|625638|family with sequence similarity 43, member B
mm9_v1_chr6_-_47763309_47763428	0.988384	FOXN1.p2	AK168447|Pdia4|12304|protein disulfide isomerase associated 4	AK161534|Pdia4|12304|protein disulfide isomerase associated 4	AK146288|Pdia4|12304|protein disulfide isomerase associated 4	AK169387|Pdia4|12304|protein disulfide isomerase associated 4	AK028292|Pdia4|12304|protein disulfide isomerase associated 4	AK150566|Pdia4|12304|protein disulfide isomerase associated 4	J05186|Pdia4|12304|protein disulfide isomerase associated 4	BC141078|Pdia4|12304|protein disulfide isomerase associated 4	AK148801|Pdia4|12304|protein disulfide isomerase associated 4
mm9_v1_chr1_+_121423003_121423069	0.982863	FOXN1.p2	AK010846|Tmem185b|226351|transmembrane protein 185B
mm9_v1_chr18_+_35931207_35931276	0.980401	FOXN1.p2	NM_019912|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2	AK146659|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2	AK160567|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2	AK005355|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2	AK139623|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2	U62483|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2	AK136197|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2
mm9_v1_chr1_+_180336178_180336231	0.976379	FOXN1.p2	AK019802|Efcab2|68226|EF-hand calcium binding domain 2	AK019663|Efcab2|68226|EF-hand calcium binding domain 2	AK015157|Efcab2|68226|EF-hand calcium binding domain 2	AK029880|Efcab2|68226|EF-hand calcium binding domain 2
mm9_v1_chr5_-_140865121_140865262	0.973501	FOXN1.p2	AK045061|Snx8|231834|sorting nexin 8	AK082871|Snx8|231834|sorting nexin 8	AK148429|Snx8|231834|sorting nexin 8	NM_172277|Snx8|231834|sorting nexin 8	BC037599|Snx8|231834|sorting nexin 8
mm9_v1_chr7_+_17460697_17460886	0.967966	FOXN1.p2	AB073971|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm9_v1_chr9_-_110556645_110556664	0.964767	FOXN1.p2	BC157956|Nbeal2|235627|neurobeachin-like 2	BC172118|Nbeal2|235627|neurobeachin-like 2	NM_183276|Nbeal2|235627|neurobeachin-like 2
mm9_v1_chr1_+_24685556_24685610	0.962374	FOXN1.p2	BC025579|Lmbrd1|68421|LMBR1 domain containing 1	BC031902|Lmbrd1|68421|LMBR1 domain containing 1	AK167080|Lmbrd1|68421|LMBR1 domain containing 1	AK152170|Lmbrd1|68421|LMBR1 domain containing 1	AK153237|Lmbrd1|68421|LMBR1 domain containing 1
mm9_v1_chr5_-_38550627_38550759	0.959939	FOXN1.p2	AF035683|Nsg1|18196|neuron specific gene family member 1	AK144503|Nsg1|18196|neuron specific gene family member 1	BC008272|Nsg1|18196|neuron specific gene family member 1	AK078054|Nsg1|18196|neuron specific gene family member 1	AK148941|Nsg1|18196|neuron specific gene family member 1	AX775765|Nsg1|18196|neuron specific gene family member 1	NM_010942|Nsg1|18196|neuron specific gene family member 1
mm9_v1_chr14_-_32064403_32064537	0.959827	FOXN1.p2	AK005852|Phf7|71838|PHD finger protein 7	NM_027949|Phf7|71838|PHD finger protein 7	AK005673|Phf7|71838|PHD finger protein 7	AK148191|Phf7|71838|PHD finger protein 7	BC049113|Phf7|71838|PHD finger protein 7
mm9_v1_chr19_+_5637459_5637550	0.95968	FOXN1.p2	AK155321|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	AK158072|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	BC094053|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	NM_009045|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)
mm9_v1_chr14_-_62175657_62175722	0.957934	FOXN1.p2	AK018153|6330409N04Rik|66674|RIKEN cDNA 6330409N04 gene	NM_025697|6330409N04Rik|66674|RIKEN cDNA 6330409N04 gene
mm9_v1_chr3_-_105604199_105604320	0.957773	FOXN1.p2	AK152504|Rap1a|109905|RAS-related protein-1a	AK030897|Rap1a|109905|RAS-related protein-1a	BC051419|Rap1a|109905|RAS-related protein-1a	NM_145541|Rap1a|109905|RAS-related protein-1a
mm9_v1_chr12_-_113749313_113749357	0.956317	FOXN1.p2	AK049973|Tmem179|104885|transmembrane protein 179	AK044254|Tmem179|104885|transmembrane protein 179
mm9_v1_chr5_+_123844794_123844938	0.956303	FOXN1.p2	AK047475|Mlxip|208104|MLX interacting protein	NM_133917|Mlxip|208104|MLX interacting protein	NM_177582|Mlxip|208104|MLX interacting protein	BC137770|Mlxip|208104|MLX interacting protein	AY968204|Mlxip|208104|MLX interacting protein
mm9_v1_chr5_+_28492235_28492251	0.954768	FOXN1.p2	AK157766|En2|13799|engrailed 2	NM_010134|En2|13799|engrailed 2
mm9_v1_chr11_+_70658310_70658476	0.950975	FOXN1.p2	AK205489|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AB001750|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	D86066|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	BC129853|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	BC129854|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AF248489|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AF248490|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1
mm9_v1_chrX_+_20937988_20937991	0.950108	FOXN1.p2	AK032684|Gm5124|331392|predicted pseudogene 5124	NM_198633|Gm5124|331392|predicted pseudogene 5124
mm9_v1_chr9_-_91260619_91260636	0.949394	FOXN1.p2	NM_009573|Zic1|22771|zinc finger protein of the cerebellum 1
mm9_v1_chr12_-_71328603_71328613	0.946013	FOXN1.p2	BC013636|Pygl|110095|liver glycogen phosphorylase	AF288783|Pygl|110095|liver glycogen phosphorylase	AK167337|Pygl|110095|liver glycogen phosphorylase
mm9_v1_chr9_-_45714959_45715007	0.941853	FOXN1.p2	AK051527|Rnf214|235315|ring finger protein 214	NM_178709|Rnf214|235315|ring finger protein 214	AK046997|Rnf214|235315|ring finger protein 214	AK030208|Rnf214|235315|ring finger protein 214
mm9_v1_chr2_-_180689380_180689413	0.94039	FOXN1.p2	BC061107|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	AK021096|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	NM_001141933|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	NM_021426|Nkain4|58237|Na+/K+ transporting ATPase interacting 4
mm9_v1_chr4_+_144482979_144483095	0.939419	FOXN1.p2	AK032958|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	X95281|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	AK151419|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	NM_011303|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	BC013540|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3
mm9_v1_chr16_-_45724720_45724763	0.93801	FOXN1.p2	AK012333|Tagln3|56370|transgelin 3
mm9_v1_chr4_+_56815248_56815272	0.93593	FOXN1.p2	BC048548|BC026590|230234|cDNA sequence BC026590	BC062190|BC026590|230234|cDNA sequence BC026590
mm9_v1_chr7_+_28233013_28233084	0.935024	FOXN1.p2	BC006617|Blvrb|233016|biliverdin reductase B (flavin reductase (NADPH))	AK153153|Blvrb|233016|biliverdin reductase B (flavin reductase (NADPH))
mm9_v1_chrX_+_71528035_71528145	0.934984	FOXN1.p2	NM_001173547|Taz|66826|tafazzin	NM_181516|Taz|66826|tafazzin	AK172563|Taz|66826|tafazzin	AK019872|Taz|66826|tafazzin	AK076481|Taz|66826|tafazzin	AK160327|Taz|66826|tafazzin	AK170662|Taz|66826|tafazzin	AK004035|Taz|66826|tafazzin	AK075615|Taz|66826|tafazzin	BC015305|Taz|66826|tafazzin
mm9_v1_chr11_-_116274124_116274168	0.928815	FOXN1.p2	BC053070|Rnf157|217340|ring finger protein 157
mm9_v1_chr10_+_59740373_59740429	0.927033	FOXN1.p2	NM_001146120|Psap|19156|prosaposin	NM_001146121|Psap|19156|prosaposin	NM_001146122|Psap|19156|prosaposin	NM_001146123|Psap|19156|prosaposin	NM_011179|Psap|19156|prosaposin	AK167902|Psap|19156|prosaposin	AK151686|Psap|19156|prosaposin	AK152203|Psap|19156|prosaposin
mm9_v1_chr9_-_20935610_20935730	0.924913	FOXN1.p2	AK134154|Tyk2|54721|tyrosine kinase 2	AK155923|Tyk2|54721|tyrosine kinase 2	AK171609|Tyk2|54721|tyrosine kinase 2	AF173032|Tyk2|54721|tyrosine kinase 2	AK170107|Tyk2|54721|tyrosine kinase 2	AK170940|Tyk2|54721|tyrosine kinase 2	AK154438|Tyk2|54721|tyrosine kinase 2	AK159303|Tyk2|54721|tyrosine kinase 2	AK165483|Tyk2|54721|tyrosine kinase 2	AK167726|Tyk2|54721|tyrosine kinase 2	NM_018793|Tyk2|54721|tyrosine kinase 2
mm9_v1_chr11_-_70053281_70053355	0.923352	FOXN1.p2	BC021602|Rnasek|52898|ribonuclease, RNase K	BC021603|Rnasek|52898|ribonuclease, RNase K	AK018709|Rnasek|52898|ribonuclease, RNase K	AK171975|Rnasek|52898|ribonuclease, RNase K	BC024417|Rnasek|52898|ribonuclease, RNase K	AK003548|Rnasek|52898|ribonuclease, RNase K	AK009592|Rnasek|52898|ribonuclease, RNase K	NM_173742|Rnasek|52898|ribonuclease, RNase K
mm9_v1_chr14_+_19103655_19103798	0.921098	FOXN1.p2	NM_023526|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	AK028539|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	AK148040|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	AK010285|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	BC061092|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	AK167340|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	AF225707|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1
mm9_v1_chr4_+_115500670_115500814	0.918646	FOXN1.p2	AK084014|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	AK148476|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	NM_175308|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC099740|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC137587|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC137589|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)
mm9_v1_chr11_+_95685772_95685902	0.917697	FOXN1.p2	AJ457190|Phospho1|237928|phosphatase, orphan 1	NM_153104|Phospho1|237928|phosphatase, orphan 1
mm9_v1_chr19_+_8994860_8994941	0.916432	FOXN1.p2	AK144402|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	BC004038|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	NM_024256|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	AK048428|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	BC012930|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	AK140424|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)
mm9_v1_chr3_-_104315689_104315735	0.916045	FOXN1.p2	BC138422|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2	BC094228|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chr13_-_77274698_77274775	0.915269	FOXN1.p2	AK047775|Ankrd32|105377|ankyrin repeat domain 32	BC100362|Ankrd32|105377|ankyrin repeat domain 32	BC061188|Ankrd32|105377|ankyrin repeat domain 32	AK012253|Ankrd32|105377|ankyrin repeat domain 32	AK089501|Ankrd32|105377|ankyrin repeat domain 32	AK171473|Ankrd32|105377|ankyrin repeat domain 32	NM_134071|Ankrd32|105377|ankyrin repeat domain 32
mm9_v1_chr5_+_138635541_138635706	0.910977	FOXN1.p2	AK049381|Mblac1|330216|metallo-beta-lactamase domain containing 1	NM_177878|Mblac1|330216|metallo-beta-lactamase domain containing 1	BC038925|Mblac1|330216|metallo-beta-lactamase domain containing 1
mm9_v1_chr9_-_21095328_21095652	0.90578	FOXN1.p2	AK140808|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	U20497|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	BC013898|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	U19597|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	AK144737|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	AK132906|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	NM_009878|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
mm9_v1_chr4_+_40669908_40669973	0.904713	FOXN1.p2	NM_001164671|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	NM_001164672|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1
mm9_v1_chr6_+_55402231_55402288	0.903911	FOXN1.p2	AK147609|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	D82935|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1
mm9_v1_chr10_-_108447894_108447956	0.903546	FOXN1.p2	D37792|Syt1|20979|synaptotagmin I	AK164153|Syt1|20979|synaptotagmin I	AK018163|Syt1|20979|synaptotagmin I
mm9_v1_chr6_+_115084919_115085009	0.89687	FOXN1.p2	AF096867|Syn2|20965|synapsin II	NM_001111015|Syn2|20965|synapsin II	NM_013681|Syn2|20965|synapsin II	BC053427|Syn2|20965|synapsin II
mm9_v1_chr14_+_64225366_64225366	0.894242	FOXN1.p2	NM_173393|Xkr6|219149|X Kell blood group precursor related family member 6 homolog
mm9_v1_chr1_-_84281164_84281254	0.893111	FOXN1.p2	BC080290|Pid1|98496|phosphotyrosine interaction domain containing 1	AK164328|Pid1|98496|phosphotyrosine interaction domain containing 1	AK151267|Pid1|98496|phosphotyrosine interaction domain containing 1	AK163691|Pid1|98496|phosphotyrosine interaction domain containing 1	NM_001003948|Pid1|98496|phosphotyrosine interaction domain containing 1
mm9_v1_chr4_-_58924786_58924804	0.892717	FOXN1.p2	AK038775|AI314180|230249|expressed sequence AI314180	AK043020|AI314180|230249|expressed sequence AI314180
mm9_v1_chr15_+_100299408_100299504	0.891999	FOXN1.p2	NM_134093|Letmd1|68614|LETM1 domain containing 1	AK158718|Letmd1|68614|LETM1 domain containing 1
mm9_v1_chr3_+_103718042_103718073	0.88937	FOXN1.p2	AB101658|Rsbn1|229675|rosbin, round spermatid basic protein 1	NM_172684|Rsbn1|229675|rosbin, round spermatid basic protein 1	BC139213|Rsbn1|229675|rosbin, round spermatid basic protein 1	BC139215|Rsbn1|229675|rosbin, round spermatid basic protein 1
mm9_v1_chr17_-_72953646_72953646	0.889261	FOXN1.p2	AK051358|Alk|11682|anaplastic lymphoma kinase	NM_007439|Alk|11682|anaplastic lymphoma kinase
mm9_v1_chr19_+_5568045_5568150	0.884194	FOXN1.p2	AK144121|Gm962|381201|predicted gene 962	NM_001033448|Gm962|381201|predicted gene 962	BC147482|Gm962|381201|predicted gene 962
mm9_v1_chr5_+_45911467_45911626	0.884086	FOXN1.p2	NM_025895|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AK007855|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AF318060|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AK154249|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	BC024941|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AK003854|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AK005681|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AK201969|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)
mm9_v1_chr8_-_86222963_86223117	0.882853	FOXN1.p2	AK134792|Pkn1|320795|protein kinase N1	BC052923|Pkn1|320795|protein kinase N1	NM_177262|Pkn1|320795|protein kinase N1	AK170556|Pkn1|320795|protein kinase N1	AK050643|Pkn1|320795|protein kinase N1
mm9_v1_chr17_+_85489891_85489912	0.880508	FOXN1.p2	BC138272|1700106N22Rik|73582|RIKEN cDNA 1700106N22 gene	BC138273|1700106N22Rik|73582|RIKEN cDNA 1700106N22 gene
mm9_v1_chr6_-_113451922_113451926	0.878301	FOXN1.p2	AK031947|Prrt3|210673|proline-rich transmembrane protein 3
mm9_v1_chr3_-_152331083_152331103	0.87752	FOXN1.p2	AK053807|Ak5|229949|adenylate kinase 5	NM_001081277|Ak5|229949|adenylate kinase 5
mm9_v1_chr12_+_45429894_45429900	0.87577	FOXN1.p2	AK048567|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule
mm9_v1_chr2_+_112106470_112106612	0.872748	FOXN1.p2	BC062099|Slc12a6|107723|solute carrier family 12, member 6	NM_133649|Slc12a6|107723|solute carrier family 12, member 6
mm9_v1_chr19_+_46227029_46227030	0.872534	FOXN1.p2	AK039570|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1
mm9_v1_chr2_-_180689328_180689372	0.865299	FOXN1.p2	EF058055|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	EF058056|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	EF058057|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	BC089330|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	AB030182|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	AK007632|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	AK005262|Nkain4|58237|Na+/K+ transporting ATPase interacting 4
mm9_v1_chr11_+_30854457_30854463	0.863225	FOXN1.p2	AK010315|Asb3|65257|ankyrin repeat and SOCS box-containing 3	BC023086|Asb3|65257|ankyrin repeat and SOCS box-containing 3
mm9_v1_chr17_+_29628249_29628310	0.854498	FOXN1.p2	AK154669|Pim1|18712|proviral integration site 1
mm9_v1_chr14_-_76510534_76510637	0.852714	FOXN1.p2	AK173238|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	BC029731|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	AK004707|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	AK082912|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	NM_026177|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	AK016681|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene
mm9_v1_chr19_+_46227031_46227037	0.850789	FOXN1.p2	AK143358|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1
mm9_v1_chr7_+_134614507_134614614	0.850254	FOXN1.p2	AK151203|Prr14|233895|proline rich 14	AK145816|Prr14|233895|proline rich 14	AK139559|Prr14|233895|proline rich 14
mm9_v1_chr9_+_108241754_108241796	0.849363	FOXN1.p2	AK191208|Gpx1|14775|glutathione peroxidase 1	AK191913|Gpx1|14775|glutathione peroxidase 1	AK200043|Gpx1|14775|glutathione peroxidase 1	AK201721|Gpx1|14775|glutathione peroxidase 1	AK202661|Gpx1|14775|glutathione peroxidase 1	AK205185|Gpx1|14775|glutathione peroxidase 1
mm9_v1_chr13_-_8870231_8870293	0.849009	FOXN1.p2	AK129254|Wdr37|207615|WD repeat domain 37	AK032582|Wdr37|207615|WD repeat domain 37	AK146209|Wdr37|207615|WD repeat domain 37	AK014128|Wdr37|207615|WD repeat domain 37	AK044740|Wdr37|207615|WD repeat domain 37	AK036203|Wdr37|207615|WD repeat domain 37	NM_001039389|Wdr37|207615|WD repeat domain 37	NM_172445|Wdr37|207615|WD repeat domain 37
mm9_v1_chr11_-_23533535_23533548	0.847871	FOXN1.p2	AK029538|0610010F05Rik|71675|RIKEN cDNA 0610010F05 gene
mm9_v1_chr11_-_84338922_84339036	0.846273	FOXN1.p2	Z27410|Lhx1|16869|LIM homeobox protein 1	BC092374|Lhx1|16869|LIM homeobox protein 1	NM_008498|Lhx1|16869|LIM homeobox protein 1	AK141086|Lhx1|16869|LIM homeobox protein 1
mm9_v1_chr12_+_77505162_77505162	0.844038	FOXN1.p2	BC052350|Hspa2|15512|heat shock protein 2	NM_001002012|Hspa2|15512|heat shock protein 2
mm9_v1_chr10_+_116018336_116018351	0.843161	FOXN1.p2	AK077360|5330438D12Rik|327824|RIKEN cDNA 5330438D12 gene
mm9_v1_chr11_-_23533564_23533665	0.840348	FOXN1.p2	AK129454|0610010F05Rik|71675|RIKEN cDNA 0610010F05 gene	BC055049|0610010F05Rik|71675|RIKEN cDNA 0610010F05 gene	BC079876|0610010F05Rik|71675|RIKEN cDNA 0610010F05 gene	BC072622|0610010F05Rik|71675|RIKEN cDNA 0610010F05 gene	AK053838|0610010F05Rik|71675|RIKEN cDNA 0610010F05 gene	NM_027860|0610010F05Rik|71675|RIKEN cDNA 0610010F05 gene
mm9_v1_chrX_-_72330123_72330268	0.83789	FOXN1.p2	BC141240|Gab3|210710|growth factor receptor bound protein 2-associated protein 3	AY057988|Gab3|210710|growth factor receptor bound protein 2-associated protein 3	AK039787|Gab3|210710|growth factor receptor bound protein 2-associated protein 3	AK031227|Gab3|210710|growth factor receptor bound protein 2-associated protein 3	NM_181584|Gab3|210710|growth factor receptor bound protein 2-associated protein 3
mm9_v1_chr15_+_80085923_80086003	0.837652	FOXN1.p2	AK146193|Atf4|11911|activating transcription factor 4	AK144777|Atf4|11911|activating transcription factor 4	AK155254|Atf4|11911|activating transcription factor 4	AK138657|Atf4|11911|activating transcription factor 4	AK150231|Atf4|11911|activating transcription factor 4	X61507|Atf4|11911|activating transcription factor 4	AK156298|Atf4|11911|activating transcription factor 4	M94087|Atf4|11911|activating transcription factor 4	BC031542|Atf4|11911|activating transcription factor 4	AK157839|Atf4|11911|activating transcription factor 4	AK195416|Atf4|11911|activating transcription factor 4
mm9_v1_chr11_-_60988419_60988468	0.832627	FOXN1.p2	BC080737|Usp22|216825|ubiquitin specific peptidase 22	AK160992|Usp22|216825|ubiquitin specific peptidase 22
mm9_v1_chr14_-_52898915_52898939	0.827299	FOXN1.p2	AB232586|Rab2b|76338|RAB2B, member RAS oncogene family	AK160351|Rab2b|76338|RAB2B, member RAS oncogene family
mm9_v1_chrX_+_20938001_20938025	0.826382	FOXN1.p2	BC137827|Gm5124|331392|predicted pseudogene 5124
mm9_v1_chr10_-_30562434_30562625	0.821516	FOXN1.p2	AK031506|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	AB093589|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	BC103575|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	BC105651|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	BC103576|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	BC105652|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	AF173902|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	AF232240|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	AK158000|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	AF172287|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	AJ271867|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	NM_013904|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2
mm9_v1_chr8_+_108225509_108225588	0.819593	FOXN1.p2	BC061114|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	AK158848|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	NM_001047435|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	NM_019695|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	BC049593|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	AK003030|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)
mm9_v1_chr19_+_29038321_29038434	0.817709	FOXN1.p2	AK016572|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2	NM_028922|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2	AK041581|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2
mm9_v1_chr3_-_19935292_19935325	0.817562	FOXN1.p2	AK157953|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK149359|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK166194|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK155497|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK171997|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK086167|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AF393747|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK079896|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AF393780|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK049204|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	NM_001146323|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	NM_001146324|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	NM_080634|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK036663|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)
mm9_v1_chr11_+_74644479_74644499	0.816478	FOXN1.p2	Y07609|Mnt|17428|max binding protein	BC054534|Mnt|17428|max binding protein
mm9_v1_chr14_-_32308152_32308237	0.814712	FOXN1.p2	BC030449|Mettl6|67011|methyltransferase like 6	NM_025907|Mettl6|67011|methyltransferase like 6	AK133735|Mettl6|67011|methyltransferase like 6	AK006715|Mettl6|67011|methyltransferase like 6	AK005448|Mettl6|67011|methyltransferase like 6	AK078185|Mettl6|67011|methyltransferase like 6	AK082949|Mettl6|67011|methyltransferase like 6
mm9_v1_chr4_-_9596206_9596308	0.813581	FOXN1.p2	BC015281|Asph|65973|aspartate-beta-hydroxylase	AF289486|Asph|65973|aspartate-beta-hydroxylase	AF289487|Asph|65973|aspartate-beta-hydroxylase	AF289488|Asph|65973|aspartate-beta-hydroxylase	AK030293|Asph|65973|aspartate-beta-hydroxylase	AK032420|Asph|65973|aspartate-beta-hydroxylase	AK151787|Asph|65973|aspartate-beta-hydroxylase	AK049506|Asph|65973|aspartate-beta-hydroxylase	AK139566|Asph|65973|aspartate-beta-hydroxylase	AK160984|Asph|65973|aspartate-beta-hydroxylase	AK165260|Asph|65973|aspartate-beta-hydroxylase	BC061098|Asph|65973|aspartate-beta-hydroxylase	NM_001177849|Asph|65973|aspartate-beta-hydroxylase	NM_001177850|Asph|65973|aspartate-beta-hydroxylase	NM_001177851|Asph|65973|aspartate-beta-hydroxylase	NM_001177855|Asph|65973|aspartate-beta-hydroxylase	NM_001177856|Asph|65973|aspartate-beta-hydroxylase	NM_023066|Asph|65973|aspartate-beta-hydroxylase
mm9_v1_chr3_+_75361454_75361503	0.809749	FOXN1.p2	NM_009250|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	AK032152|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	AK133770|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	BC006776|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	AJ001700|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1
mm9_v1_chr19_+_5637741_5637828	0.809365	FOXN1.p2	AK089489|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	AK144565|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	AK154630|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	AK155889|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	AK157076|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	M61909|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	DQ020177|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)
mm9_v1_chr8_-_96536437_96536583	0.80652	FOXN1.p2	BC040338|Amfr|23802|autocrine motility factor receptor	BC034538|Amfr|23802|autocrine motility factor receptor	AK038442|Amfr|23802|autocrine motility factor receptor	AK170716|Amfr|23802|autocrine motility factor receptor	AK157327|Amfr|23802|autocrine motility factor receptor	NM_011787|Amfr|23802|autocrine motility factor receptor
mm9_v1_chr2_-_24790784_24790800	0.80337	FOXN1.p2	NM_001162485|Arrdc1|215705|arrestin domain containing 1	NM_178408|Arrdc1|215705|arrestin domain containing 1
mm9_v1_chr11_+_6289339_6289394	0.803156	FOXN1.p2	NM_028601|Zmiz2|52915|zinc finger, MIZ-type containing 2
mm9_v1_chr16_+_13109993_13110037	0.802922	FOXN1.p2	AK149326|Ercc4|50505|excision repair cross-complementing rodent repair deficiency, complementation group 4	AK018375|Ercc4|50505|excision repair cross-complementing rodent repair deficiency, complementation group 4	AK043366|Ercc4|50505|excision repair cross-complementing rodent repair deficiency, complementation group 4	AK138588|Ercc4|50505|excision repair cross-complementing rodent repair deficiency, complementation group 4	BC026792|Ercc4|50505|excision repair cross-complementing rodent repair deficiency, complementation group 4
mm9_v1_chr2_+_120229945_120229959	0.799271	FOXN1.p2	BC075687|Ganc|76051|glucosidase, alpha; neutral C	AK135218|Ganc|76051|glucosidase, alpha; neutral C	AK220303|Ganc|76051|glucosidase, alpha; neutral C
mm9_v1_chrX_-_138740574_138740725	0.797191	FOXN1.p2	AK014537|Kcne1l|66240|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	BC028942|Kcne1l|66240|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	AK005246|Kcne1l|66240|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene
mm9_v1_chrX_+_71638629_71638677	0.797134	FOXN1.p2	NM_001161423|Ikbkg|16151|inhibitor of kappaB kinase gamma	NM_001161424|Ikbkg|16151|inhibitor of kappaB kinase gamma
mm9_v1_chr9_-_44042043_44042131	0.796543	FOXN1.p2	BC125285|Cbl|12402|Casitas B-lineage lymphoma	X57111|Cbl|12402|Casitas B-lineage lymphoma	AK153915|Cbl|12402|Casitas B-lineage lymphoma	AK163907|Cbl|12402|Casitas B-lineage lymphoma	NM_007619|Cbl|12402|Casitas B-lineage lymphoma	AK029826|Cbl|12402|Casitas B-lineage lymphoma
mm9_v1_chr3_+_103718466_103718512	0.795004	FOXN1.p2	AK138603|Rsbn1|229675|rosbin, round spermatid basic protein 1	BC069993|Rsbn1|229675|rosbin, round spermatid basic protein 1	AK122577|Rsbn1|229675|rosbin, round spermatid basic protein 1	BC094667|Rsbn1|229675|rosbin, round spermatid basic protein 1
mm9_v1_chr9_-_8134293_8134451	0.794277	FOXN1.p2	BC119072|AK129341|234915|cDNA sequence AK129341	BC120489|AK129341|234915|cDNA sequence AK129341	NM_001045524|AK129341|234915|cDNA sequence AK129341
mm9_v1_chr2_-_92274110_92274239	0.79372	FOXN1.p2	AB003433|Cry2|12953|cryptochrome 2 (photolyase-like)	AK172994|Cry2|12953|cryptochrome 2 (photolyase-like)	BC054794|Cry2|12953|cryptochrome 2 (photolyase-like)	BC066799|Cry2|12953|cryptochrome 2 (photolyase-like)	AK037778|Cry2|12953|cryptochrome 2 (photolyase-like)	AK041696|Cry2|12953|cryptochrome 2 (photolyase-like)	AF156987|Cry2|12953|cryptochrome 2 (photolyase-like)	AK133781|Cry2|12953|cryptochrome 2 (photolyase-like)	NM_001113333|Cry2|12953|cryptochrome 2 (photolyase-like)	NM_009963|Cry2|12953|cryptochrome 2 (photolyase-like)	AK051524|Cry2|12953|cryptochrome 2 (photolyase-like)
mm9_v1_chr16_+_75593088_75593194	0.793091	FOXN1.p2	BC050779|Rbm11|224344|RNA binding motif protein 11	NM_198302|Rbm11|224344|RNA binding motif protein 11	AK039297|Rbm11|224344|RNA binding motif protein 11
mm9_v1_chr2_+_173902521_173902654	0.791911	FOXN1.p2	AK078110|Stx16|228960|syntaxin 16	NM_001102423|Stx16|228960|syntaxin 16	NM_001102424|Stx16|228960|syntaxin 16	NM_001102425|Stx16|228960|syntaxin 16	NM_172675|Stx16|228960|syntaxin 16	BC094436|Stx16|228960|syntaxin 16	BC095989|Stx16|228960|syntaxin 16	BC138544|Stx16|228960|syntaxin 16
mm9_v1_chr7_+_130521491_130521589	0.786946	FOXN1.p2	NM_025304|Lcmt1|30949|leucine carboxyl methyltransferase 1	AK003424|Lcmt1|30949|leucine carboxyl methyltransferase 1	BC132507|Lcmt1|30949|leucine carboxyl methyltransferase 1	BC132509|Lcmt1|30949|leucine carboxyl methyltransferase 1	BC145301|Lcmt1|30949|leucine carboxyl methyltransferase 1
mm9_v1_chr3_-_58495986_58496041	0.778427	FOXN1.p2	Z19581|Siah2|20439|seven in absentia 2
mm9_v1_chrX_+_5624624_5624624	0.772325	FOXN1.p2	AK048263|Nudt11|58242|nudix (nucleoside diphosphate linked moiety X)-type motif 11	NM_021431|Nudt11|58242|nudix (nucleoside diphosphate linked moiety X)-type motif 11
mm9_v1_chr17_-_28044625_28044725	0.767346	FOXN1.p2	BC005603|Taf11|68776|TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK050689|Taf11|68776|TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_026836|Taf11|68776|TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr9_-_79641131_79641161	0.767109	FOXN1.p2	AK150071|Tmem30a|69981|transmembrane protein 30A	AK170171|Tmem30a|69981|transmembrane protein 30A	AK170697|Tmem30a|69981|transmembrane protein 30A	AK159364|Tmem30a|69981|transmembrane protein 30A
mm9_v1_chr9_+_21397165_21397375	0.765679	FOXN1.p2	BC057071|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	NM_178619|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	AK030602|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	AK028799|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene
mm9_v1_chr17_+_56109922_56110011	0.762906	FOXN1.p2	AK164639|Shd|20420|src homology 2 domain-containing transforming protein D	BC103798|Shd|20420|src homology 2 domain-containing transforming protein D
mm9_v1_chr14_-_76410654_76410753	0.76114	FOXN1.p2	BC027173|Gtf2f2|68705|general transcription factor IIF, polypeptide 2	AK144858|Gtf2f2|68705|general transcription factor IIF, polypeptide 2	NM_026816|Gtf2f2|68705|general transcription factor IIF, polypeptide 2
mm9_v1_chr9_+_21397379_21397470	0.751368	FOXN1.p2	AK088045|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	AK089121|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	BC025883|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	AK034762|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene
mm9_v1_chr6_+_134870680_134870720	0.75077	FOXN1.p2	AK046676|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	AK162146|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	U10440|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B
mm9_v1_chrX_-_131543723_131543772	0.750067	FOXN1.p2	BC067022|Zmat1|215693|zinc finger, matrin type 1	NM_175446|Zmat1|215693|zinc finger, matrin type 1
mm9_v1_chr8_-_13677450_13677625	0.749068	FOXN1.p2	BC068297|Rasa3|19414|RAS p21 protein activator 3	AK147896|Rasa3|19414|RAS p21 protein activator 3	U20238|Rasa3|19414|RAS p21 protein activator 3	BC057300|Rasa3|19414|RAS p21 protein activator 3	AK053353|Rasa3|19414|RAS p21 protein activator 3	AK166354|Rasa3|19414|RAS p21 protein activator 3	NM_009025|Rasa3|19414|RAS p21 protein activator 3	AK141511|Rasa3|19414|RAS p21 protein activator 3	BC060195|Rasa3|19414|RAS p21 protein activator 3
mm9_v1_chr7_+_17460662_17460665	0.743405	FOXN1.p2	DQ832319|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)	NM_001081655|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm9_v1_chr3_+_96439352_96439425	0.740913	FOXN1.p2	NM_001162387|Pex11b|18632|peroxisomal biogenesis factor 11 beta	NM_011069|Pex11b|18632|peroxisomal biogenesis factor 11 beta	AK082778|Pex11b|18632|peroxisomal biogenesis factor 11 beta
mm9_v1_chr5_-_42099382_42099426	0.740673	FOXN1.p2	AK159493|Rab28|100972|RAB28, member RAS oncogene family	BC004580|Rab28|100972|RAB28, member RAS oncogene family	NM_027295|Rab28|100972|RAB28, member RAS oncogene family	AK012286|Rab28|100972|RAB28, member RAS oncogene family
mm9_v1_chr13_+_55724400_55724442	0.731769	FOXN1.p2	U21960|Caml|12328|calcium modulating ligand	BC005688|Caml|12328|calcium modulating ligand
mm9_v1_chr2_-_156439157_156439262	0.73099	FOXN1.p2	AK032272|LOC100504350|100504350|hypothetical LOC100504350
mm9_v1_chr12_-_113749361_113749362	0.729304	FOXN1.p2	BC055014|Tmem179|104885|transmembrane protein 179
mm9_v1_chr17_+_35516558_35516583	0.729119	FOXN1.p2	AK037574|H2-Gs10|436493|MHC class I like protein GS10	AK136497|H2-Gs10|436493|MHC class I like protein GS10	NM_001143689|H2-Gs10|436493|MHC class I like protein GS10	BC010602|H2-Gs10|436493|MHC class I like protein GS10
mm9_v1_chr9_-_79641213_79641236	0.728999	FOXN1.p2	AK077065|Tmem30a|69981|transmembrane protein 30A	NM_133718|Tmem30a|69981|transmembrane protein 30A
mm9_v1_chr6_+_55401971_55401981	0.728416	FOXN1.p2	AK083108|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	NM_001025372|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	NM_007407|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	AK042820|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1
mm9_v1_chr15_-_27560282_27560465	0.727063	FOXN1.p2	AK134955|Fam105b|432940|family with sequence similarity 105, member B	AK150371|Fam105b|432940|family with sequence similarity 105, member B	NM_001013792|Fam105b|432940|family with sequence similarity 105, member B
mm9_v1_chr3_-_104315778_104315782	0.726916	FOXN1.p2	AK036116|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2	NM_001025067|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chr5_+_124562306_124562355	0.719687	FOXN1.p2	AK168946|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	BC069872|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	AK004943|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	AK017497|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	AK018534|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	NM_025671|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	AK004916|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2
mm9_v1_chr1_+_89652645_89652774	0.719432	FOXN1.p2	AK030983|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	NM_029846|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK145673|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK155358|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK163246|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK170073|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	BC049122|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK048873|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK005181|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087879|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087880|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087881|Atg16l1|77040|autophagy-related 16-like 1 (yeast)
mm9_v1_chr10_-_53795556_53795601	0.718433	FOXN1.p2	AK031038|Man1a|17155|mannosidase 1, alpha	NM_008548|Man1a|17155|mannosidase 1, alpha
mm9_v1_chr6_+_125165597_125165677	0.718406	FOXN1.p2	AK018783|Vamp1|22317|vesicle-associated membrane protein 1	AK037711|Vamp1|22317|vesicle-associated membrane protein 1	AK078156|Vamp1|22317|vesicle-associated membrane protein 1	NM_001080557|Vamp1|22317|vesicle-associated membrane protein 1	NM_009496|Vamp1|22317|vesicle-associated membrane protein 1	BC057587|Vamp1|22317|vesicle-associated membrane protein 1	BC049902|Vamp1|22317|vesicle-associated membrane protein 1	U61751|Vamp1|22317|vesicle-associated membrane protein 1
mm9_v1_chr7_-_31935974_31936116	0.715756	FOXN1.p2	AK150032|Gramd1a|52857|GRAM domain containing 1A	AK150196|Gramd1a|52857|GRAM domain containing 1A	AK150837|Gramd1a|52857|GRAM domain containing 1A	AK151987|Gramd1a|52857|GRAM domain containing 1A	AK152294|Gramd1a|52857|GRAM domain containing 1A	AK083837|Gramd1a|52857|GRAM domain containing 1A	AK004885|Gramd1a|52857|GRAM domain containing 1A	AK154821|Gramd1a|52857|GRAM domain containing 1A	NM_027898|Gramd1a|52857|GRAM domain containing 1A
mm9_v1_chr3_-_104315750_104315755	0.71353	FOXN1.p2	AK173030|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chrX_-_153930168_153930218	0.712068	FOXN1.p2	BC058688|Sms|20603|spermine synthase
mm9_v1_chr8_-_41597015_41597116	0.711648	FOXN1.p2	AK132063|Cnot7|18983|CCR4-NOT transcription complex, subunit 7	BC006021|Cnot7|18983|CCR4-NOT transcription complex, subunit 7	AK137838|Cnot7|18983|CCR4-NOT transcription complex, subunit 7	AK147048|Cnot7|18983|CCR4-NOT transcription complex, subunit 7	AK166449|Cnot7|18983|CCR4-NOT transcription complex, subunit 7	AK007767|Cnot7|18983|CCR4-NOT transcription complex, subunit 7	AK009561|Cnot7|18983|CCR4-NOT transcription complex, subunit 7
mm9_v1_chr11_-_85048564_85048637	0.703997	FOXN1.p2	BC018442|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	BC019152|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	AK133853|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	NM_025825|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	AK004888|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
mm9_v1_chr11_-_53448203_53448203	0.703689	FOXN1.p2	M23504|Il13|16163|interleukin 13	NM_008355|Il13|16163|interleukin 13
mm9_v1_chr12_-_113749363_113749407	0.701448	FOXN1.p2	AK047810|Tmem179|104885|transmembrane protein 179	NM_178915|Tmem179|104885|transmembrane protein 179	BC046482|Tmem179|104885|transmembrane protein 179	AK090230|Tmem179|104885|transmembrane protein 179
mm9_v1_chr8_+_72426082_72426113	0.700347	FOXN1.p2	BC049542|Tssk6|83984|testis-specific serine kinase 6	AF329484|Tssk6|83984|testis-specific serine kinase 6	NM_032004|Tssk6|83984|testis-specific serine kinase 6
mm9_v1_chr7_+_54305973_54306101	0.699148	FOXN1.p2	AK007864|Tmem86a|67893|transmembrane protein 86A	NM_026436|Tmem86a|67893|transmembrane protein 86A	AK075589|Tmem86a|67893|transmembrane protein 86A	BC056619|Tmem86a|67893|transmembrane protein 86A
mm9_v1_chr5_-_107125559_107125584	0.699106	FOXN1.p2	AK162026|Zfp644|52397|zinc finger protein 644
mm9_v1_chr11_+_74644411_74644428	0.699055	FOXN1.p2	NM_010813|Mnt|17428|max binding protein	U77356|Mnt|17428|max binding protein
mm9_v1_chr9_-_88614635_88614635	0.698681	FOXN1.p2	NM_001128601|Gm2382|100039707|predicted gene 2382
mm9_v1_chr8_+_119682034_119682036	0.698327	FOXN1.p2	NM_001081151|Gan|209239|giant axonal neuropathy	BC112432|Gan|209239|giant axonal neuropathy	AK039455|Gan|209239|giant axonal neuropathy
mm9_v1_chr4_-_22415444_22415519	0.695003	FOXN1.p2	X66602|Pou3f2|18992|POU domain, class 3, transcription factor 2
mm9_v1_chrX_+_20539226_20539259	0.690811	FOXN1.p2	AK038883|A230072C01Rik|320742|RIKEN cDNA A230072C01 gene
mm9_v1_chr15_+_80086643_80086644	0.685946	FOXN1.p2	L13791|Atf4|11911|activating transcription factor 4
mm9_v1_chr9_-_91260597_91260611	0.685418	FOXN1.p2	BC063247|Zic1|22771|zinc finger protein of the cerebellum 1	AK159769|Zic1|22771|zinc finger protein of the cerebellum 1	AK139143|Zic1|22771|zinc finger protein of the cerebellum 1	BC060247|Zic1|22771|zinc finger protein of the cerebellum 1
mm9_v1_chr7_-_133942605_133942705	0.684451	FOXN1.p2	Y00516|Aldoa|11674|aldolase A, fructose-bisphosphate	BC043026|Aldoa|11674|aldolase A, fructose-bisphosphate	EF662060|Aldoa|11674|aldolase A, fructose-bisphosphate	AK145639|Aldoa|11674|aldolase A, fructose-bisphosphate	AK002561|Aldoa|11674|aldolase A, fructose-bisphosphate	AK162290|Aldoa|11674|aldolase A, fructose-bisphosphate	BC066218|Aldoa|11674|aldolase A, fructose-bisphosphate	BC066801|Aldoa|11674|aldolase A, fructose-bisphosphate	BC050896|Aldoa|11674|aldolase A, fructose-bisphosphate	NM_001177307|Aldoa|11674|aldolase A, fructose-bisphosphate	BC089495|Aldoa|11674|aldolase A, fructose-bisphosphate
mm9_v1_chr16_+_3744231_3744292	0.684117	FOXN1.p2	BC011505|Zfp263|74120|zinc finger protein 263	BC056222|Zfp263|74120|zinc finger protein 263
mm9_v1_chr4_+_15808409_15808487	0.683151	FOXN1.p2	AK002635|Calb1|12307|calbindin 1	AK005081|Calb1|12307|calbindin 1	AK005243|Calb1|12307|calbindin 1	AK028050|Calb1|12307|calbindin 1	AK038856|Calb1|12307|calbindin 1	AK048517|Calb1|12307|calbindin 1	AK077499|Calb1|12307|calbindin 1	NM_009788|Calb1|12307|calbindin 1	AK028327|Calb1|12307|calbindin 1	AK078358|Calb1|12307|calbindin 1	M21531|Calb1|12307|calbindin 1	BC016421|Calb1|12307|calbindin 1
mm9_v1_chr7_-_25757430_25757522	0.679702	FOXN1.p2	AK046109|Rabac1|14470|Rab acceptor 1 (prenylated)
mm9_v1_chr5_-_84846348_84846408	0.67313	FOXN1.p2	BC057401|Epha5|13839|Eph receptor A5	AK133698|Epha5|13839|Eph receptor A5	AK034289|Epha5|13839|Eph receptor A5	AK049740|Epha5|13839|Eph receptor A5	NM_007937|Epha5|13839|Eph receptor A5
mm9_v1_chr19_+_9063730_9063822	0.67248	FOXN1.p2	AK009866|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)	AK045184|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)	NM_001039959|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)	NM_009643|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)	AK021404|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)	AK021407|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)
mm9_v1_chr19_+_29038435_29038489	0.672458	FOXN1.p2	BC052412|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2
mm9_v1_chr10_-_13272820_13272870	0.672291	FOXN1.p2	BC033415|Pex3|56535|peroxisomal biogenesis factor 3	AK075820|Pex3|56535|peroxisomal biogenesis factor 3	AF152996|Pex3|56535|peroxisomal biogenesis factor 3
mm9_v1_chr8_-_69010394_69010447	0.667744	FOXN1.p2	BC016246|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	BC034844|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	AK007637|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	NM_025465|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	AK009167|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	AK011532|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	AK051835|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	AK031875|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene
mm9_v1_chr4_-_86876311_86876327	0.667551	FOXN1.p2	AK038634|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK034424|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK083127|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr5_+_9266137_9266216	0.664327	FOXN1.p2	AK079644|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK165601|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK081041|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK034358|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK045969|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK048738|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK133610|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	NM_172706|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	BC132290|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	BC138012|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene
mm9_v1_chr3_+_136333251_136333262	0.662297	FOXN1.p2	AK166287|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr11_+_49944855_49944942	0.660421	FOXN1.p2	NM_029745|Tbc1d9b|76795|TBC1 domain family, member 9B	BC062928|Tbc1d9b|76795|TBC1 domain family, member 9B	AK166472|Tbc1d9b|76795|TBC1 domain family, member 9B	BC065080|Tbc1d9b|76795|TBC1 domain family, member 9B	AK035457|Tbc1d9b|76795|TBC1 domain family, member 9B	AK147964|Tbc1d9b|76795|TBC1 domain family, member 9B	AK049999|Tbc1d9b|76795|TBC1 domain family, member 9B	BC065130|Tbc1d9b|76795|TBC1 domain family, member 9B	AK172999|Tbc1d9b|76795|TBC1 domain family, member 9B
mm9_v1_chr14_+_52898820_52898820	0.658077	FOXN1.p2	NM_023434|Tox4|268741|TOX high mobility group box family member 4
mm9_v1_chr10_-_44178372_44178385	0.657174	FOXN1.p2	AK149344|Prdm1|12142|PR domain containing 1, with ZNF domain
mm9_v1_chr11_-_116196604_116196673	0.65588	FOXN1.p2	AK140847|Foxj1|15223|forkhead box J1	BC082543|Foxj1|15223|forkhead box J1	NM_008240|Foxj1|15223|forkhead box J1
mm9_v1_chr8_+_85689973_85690078	0.654966	FOXN1.p2	AK134614|Tbc1d9|71310|TBC1 domain family, member 9	AK173050|Tbc1d9|71310|TBC1 domain family, member 9
mm9_v1_chr7_+_114514258_114514338	0.654309	FOXN1.p2	AK089115|Syt9|60510|synaptotagmin IX	NM_021889|Syt9|60510|synaptotagmin IX	AK156631|Syt9|60510|synaptotagmin IX	BC132495|Syt9|60510|synaptotagmin IX	BC137904|Syt9|60510|synaptotagmin IX	BC145024|Syt9|60510|synaptotagmin IX
mm9_v1_chr2_+_83484743_83484852	0.653203	FOXN1.p2	BC058229|Zc3h15|69082|zinc finger CCCH-type containing 15	AK218793|Zc3h15|69082|zinc finger CCCH-type containing 15
mm9_v1_chr11_+_116976506_116976598	0.650813	FOXN1.p2	BC005766|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	BC086620|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	AK004818|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	BC055849|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)
mm9_v1_chr11_-_65981945_65982052	0.65045	FOXN1.p2	AK082443|Dnahc9|237806|dynein, axonemal, heavy chain 9	AK030981|Dnahc9|237806|dynein, axonemal, heavy chain 9	AK044263|Dnahc9|237806|dynein, axonemal, heavy chain 9	NM_001099633|Dnahc9|237806|dynein, axonemal, heavy chain 9
mm9_v1_chr14_+_52899216_52899320	0.649841	FOXN1.p2	AK041829|Tox4|268741|TOX high mobility group box family member 4	AK042459|Tox4|268741|TOX high mobility group box family member 4	AK147023|Tox4|268741|TOX high mobility group box family member 4	AK173012|Tox4|268741|TOX high mobility group box family member 4	AK147834|Tox4|268741|TOX high mobility group box family member 4	AK088144|Tox4|268741|TOX high mobility group box family member 4	AK153278|Tox4|268741|TOX high mobility group box family member 4	BC050091|Tox4|268741|TOX high mobility group box family member 4
mm9_v1_chr17_+_35479186_35479277	0.649294	FOXN1.p2	BC138688|H2-Q2|15013|histocompatibility 2, Q region locus 2	BC138689|H2-Q2|15013|histocompatibility 2, Q region locus 2	AY989880|H2-Q2|15013|histocompatibility 2, Q region locus 2	NM_010392|H2-Q2|15013|histocompatibility 2, Q region locus 2
mm9_v1_chr9_+_107904919_107905018	0.648438	FOXN1.p2	AK172921|Ip6k1|27399|inositol hexaphosphate kinase 1	AK037925|Ip6k1|27399|inositol hexaphosphate kinase 1	AK088872|Ip6k1|27399|inositol hexaphosphate kinase 1	BC053030|Ip6k1|27399|inositol hexaphosphate kinase 1	AK171310|Ip6k1|27399|inositol hexaphosphate kinase 1	AK166143|Ip6k1|27399|inositol hexaphosphate kinase 1	BC059006|Ip6k1|27399|inositol hexaphosphate kinase 1	NM_013785|Ip6k1|27399|inositol hexaphosphate kinase 1
mm9_v1_chr3_+_137527575_137527613	0.646981	FOXN1.p2	BC147478|H2afz|51788|H2A histone family, member Z	BC158035|H2afz|51788|H2A histone family, member Z	BC171999|H2afz|51788|H2A histone family, member Z
mm9_v1_chr18_+_11998043_11998097	0.637692	FOXN1.p2	AK158396|Cables1|63955|CDK5 and Abl enzyme substrate 1	AF328140|Cables1|63955|CDK5 and Abl enzyme substrate 1
mm9_v1_chr14_-_20642973_20643066	0.633629	FOXN1.p2	AK162433|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK148686|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK162070|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK160555|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK012451|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	BC023932|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	BC096571|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK012460|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK003732|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	BC048357|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK012486|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	NM_026528|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK160696|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene
mm9_v1_chr13_-_101603189_101603199	0.632199	FOXN1.p2	AK166006|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5
mm9_v1_chr9_+_89106018_89106027	0.63218	FOXN1.p2	AK158264|Mthfs|107885|5, 10-methenyltetrahydrofolate synthetase	AK004092|Mthfs|107885|5, 10-methenyltetrahydrofolate synthetase	NM_026829|Mthfs|107885|5, 10-methenyltetrahydrofolate synthetase
mm9_v1_chr13_-_56236910_56236913	0.632093	FOXN1.p2	NM_001159513|H2afy|26914|H2A histone family, member Y	NM_001159514|H2afy|26914|H2A histone family, member Y	NM_001159515|H2afy|26914|H2A histone family, member Y	NM_012015|H2afy|26914|H2A histone family, member Y
mm9_v1_chr13_+_77274778_77274859	0.631229	FOXN1.p2	NM_001081353|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	NM_001145676|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK165312|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK050886|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK008859|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	BC089469|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	BC151066|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	BC157949|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK143619|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene
mm9_v1_chr1_-_184679281_184679310	0.627196	FOXN1.p2	BC150917|4922505E12Rik|433386|RIKEN cDNA 4922505E12 gene	AK132754|4922505E12Rik|433386|RIKEN cDNA 4922505E12 gene	NM_001033547|4922505E12Rik|433386|RIKEN cDNA 4922505E12 gene
mm9_v1_chr5_+_9266117_9266130	0.627072	FOXN1.p2	AK036245|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK082474|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK043026|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene
mm9_v1_chr15_+_74346853_74346867	0.622421	FOXN1.p2	AK147600|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr11_-_69615126_69615217	0.618809	FOXN1.p2	NM_010198|Fgf11|14166|fibroblast growth factor 11	U66203|Fgf11|14166|fibroblast growth factor 11	BC066859|Fgf11|14166|fibroblast growth factor 11
mm9_v1_chr3_-_104315837_104315857	0.617147	FOXN1.p2	AK158022|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2	AK155089|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chr2_+_174153230_174153414	0.616446	FOXN1.p2	AK020895|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AF124383|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK086715|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	BC062654|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AY682719|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr6_+_134870418_134870458	0.613583	FOXN1.p2	AK047669|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	NM_009875|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	AK050240|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	AK158411|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	BC014296|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B
mm9_v1_chr6_-_47763510_47763521	0.613414	FOXN1.p2	NM_009787|Pdia4|12304|protein disulfide isomerase associated 4
mm9_v1_chr3_+_138405156_138405310	0.612813	FOXN1.p2	NM_019571|Tspan5|56224|tetraspanin 5	AF121344|Tspan5|56224|tetraspanin 5	AK013350|Tspan5|56224|tetraspanin 5	BC058695|Tspan5|56224|tetraspanin 5	BC046784|Tspan5|56224|tetraspanin 5
mm9_v1_chr15_-_96473193_96473343	0.61102	FOXN1.p2	AK162612|Slc38a1|105727|solute carrier family 38, member 1	AK081724|Slc38a1|105727|solute carrier family 38, member 1	NM_001166458|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr9_-_45714487_45714524	0.610837	FOXN1.p2	AK032376|Rnf214|235315|ring finger protein 214
mm9_v1_chr16_-_31201234_31201250	0.609839	FOXN1.p2	AK029343|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK147319|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
mm9_v1_chr9_-_45714921_45714956	0.605232	FOXN1.p2	AK028768|Rnf214|235315|ring finger protein 214	AK046190|Rnf214|235315|ring finger protein 214	BC049909|Rnf214|235315|ring finger protein 214
mm9_v1_chr19_-_5845462_5845482	0.605226	FOXN1.p2	AK159400|Neat1|66961|nuclear paraspeckle assembly transcript 1 (non-protein coding)	AK148054|Neat1|66961|nuclear paraspeckle assembly transcript 1 (non-protein coding)	AK028745|Neat1|66961|nuclear paraspeckle assembly transcript 1 (non-protein coding)	AK033579|Neat1|66961|nuclear paraspeckle assembly transcript 1 (non-protein coding)	AK145725|Neat1|66961|nuclear paraspeckle assembly transcript 1 (non-protein coding)	AK167255|Neat1|66961|nuclear paraspeckle assembly transcript 1 (non-protein coding)	AK159773|Neat1|66961|nuclear paraspeckle assembly transcript 1 (non-protein coding)	AK167154|Neat1|66961|nuclear paraspeckle assembly transcript 1 (non-protein coding)
mm9_v1_chr6_-_30846696_30846797	0.603881	FOXN1.p2	AF205065|Copg2|54160|coatomer protein complex, subunit gamma 2	AK079599|Copg2|54160|coatomer protein complex, subunit gamma 2	AK178636|Copg2|54160|coatomer protein complex, subunit gamma 2	AK186993|Copg2|54160|coatomer protein complex, subunit gamma 2	AK149462|Copg2|54160|coatomer protein complex, subunit gamma 2	BC145898|Copg2|54160|coatomer protein complex, subunit gamma 2	BC145900|Copg2|54160|coatomer protein complex, subunit gamma 2	AK147943|Copg2|54160|coatomer protein complex, subunit gamma 2	BC049178|Copg2|54160|coatomer protein complex, subunit gamma 2	NM_017478|Copg2|54160|coatomer protein complex, subunit gamma 2	AK163668|Copg2|54160|coatomer protein complex, subunit gamma 2	AJ251067|Copg2|54160|coatomer protein complex, subunit gamma 2	AK088492|Copg2|54160|coatomer protein complex, subunit gamma 2
mm9_v1_chr6_+_113433408_113433466	0.602975	FOXN1.p2	AK042344|Creld1|171508|cysteine-rich with EGF-like domains 1	AK077726|Creld1|171508|cysteine-rich with EGF-like domains 1
mm9_v1_chr14_+_32064648_32064674	0.602347	FOXN1.p2	AK079374|Bap1|104416|Brca1 associated protein 1	AK170576|Bap1|104416|Brca1 associated protein 1	AK171561|Bap1|104416|Brca1 associated protein 1	NM_027088|Bap1|104416|Brca1 associated protein 1
mm9_v1_chr12_-_4038790_4038829	0.602191	FOXN1.p2	AK043326|Efr3b|668212|EFR3 homolog B (S. cerevisiae)
mm9_v1_chr1_+_180336011_180336163	0.598993	FOXN1.p2	BC025062|Efcab2|68226|EF-hand calcium binding domain 2	NM_026626|Efcab2|68226|EF-hand calcium binding domain 2	AK018894|Efcab2|68226|EF-hand calcium binding domain 2	AK010880|Efcab2|68226|EF-hand calcium binding domain 2
mm9_v1_chr5_+_67999118_67999207	0.598937	FOXN1.p2	AK143290|Shisa3|330096|shisa homolog 3 (Xenopus laevis)	NM_001033415|Shisa3|330096|shisa homolog 3 (Xenopus laevis)	AK085772|Shisa3|330096|shisa homolog 3 (Xenopus laevis)
mm9_v1_chr7_-_108160480_108160487	0.598211	FOXN1.p2	L14751|P2ry2|18442|purinergic receptor P2Y, G-protein coupled 2
mm9_v1_chr4_-_34136995_34137041	0.595441	FOXN1.p2	AK007270|Spaca1|67652|sperm acrosome associated 1	AK016011|Spaca1|67652|sperm acrosome associated 1	BC147079|Spaca1|67652|sperm acrosome associated 1	BC147080|Spaca1|67652|sperm acrosome associated 1	AK006187|Spaca1|67652|sperm acrosome associated 1	NM_026293|Spaca1|67652|sperm acrosome associated 1
mm9_v1_chr2_+_120229566_120229631	0.594334	FOXN1.p2	AK036238|Ganc|76051|glucosidase, alpha; neutral C	NM_172672|Ganc|76051|glucosidase, alpha; neutral C
mm9_v1_chr2_-_118305356_118305444	0.589395	FOXN1.p2	M29264|Srp14|20813|signal recognition particle 14	AK156845|Srp14|20813|signal recognition particle 14	AK167821|Srp14|20813|signal recognition particle 14	BC021537|Srp14|20813|signal recognition particle 14	AK168144|Srp14|20813|signal recognition particle 14	AK019310|Srp14|20813|signal recognition particle 14	NM_009273|Srp14|20813|signal recognition particle 14
mm9_v1_chr11_-_100711785_100712037	0.588007	FOXN1.p2	Z48539|Stat5b|20851|signal transducer and activator of transcription 5B	BC024319|Stat5b|20851|signal transducer and activator of transcription 5B	AK154664|Stat5b|20851|signal transducer and activator of transcription 5B	AK150098|Stat5b|20851|signal transducer and activator of transcription 5B	NM_001113563|Stat5b|20851|signal transducer and activator of transcription 5B	AK045531|Stat5b|20851|signal transducer and activator of transcription 5B
mm9_v1_chr2_+_22924699_22924786	0.583729	FOXN1.p2	BC084584|Acbd5|74159|acyl-Coenzyme A binding domain containing 5
mm9_v1_chr13_-_14155631_14155710	0.582319	FOXN1.p2	BC006798|Ggps1|14593|geranylgeranyl diphosphate synthase 1	AK132907|Ggps1|14593|geranylgeranyl diphosphate synthase 1	BC069913|Ggps1|14593|geranylgeranyl diphosphate synthase 1	NM_010282|Ggps1|14593|geranylgeranyl diphosphate synthase 1	AK007605|Ggps1|14593|geranylgeranyl diphosphate synthase 1	AK089026|Ggps1|14593|geranylgeranyl diphosphate synthase 1	AK011980|Ggps1|14593|geranylgeranyl diphosphate synthase 1
mm9_v1_chr9_-_108480927_108481054	0.580624	FOXN1.p2	BC054367|Wdr6|83669|WD repeat domain 6	AK163752|Wdr6|83669|WD repeat domain 6	AK052235|Wdr6|83669|WD repeat domain 6	AK146617|Wdr6|83669|WD repeat domain 6	AK165935|Wdr6|83669|WD repeat domain 6	AK046119|Wdr6|83669|WD repeat domain 6	AK037181|Wdr6|83669|WD repeat domain 6	AK166265|Wdr6|83669|WD repeat domain 6	AF348591|Wdr6|83669|WD repeat domain 6	BC050894|Wdr6|83669|WD repeat domain 6	NM_031392|Wdr6|83669|WD repeat domain 6	AK169357|Wdr6|83669|WD repeat domain 6
mm9_v1_chr16_-_89818596_89818596	0.579833	FOXN1.p2	AK136856|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	NM_001145887|Tiam1|21844|T-cell lymphoma invasion and metastasis 1
mm9_v1_chr12_+_103366928_103366945	0.579028	FOXN1.p2	AK044368|Slc24a4|238384|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	AK044239|Slc24a4|238384|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm9_v1_chr17_-_24345953_24346086	0.576278	FOXN1.p2	AF149094|Ntn3|18209|netrin 3	AF152418|Ntn3|18209|netrin 3
mm9_v1_chr3_-_117063090_117063169	0.573905	FOXN1.p2	AK079635|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm9_v1_chr11_+_52045464_52045596	0.573159	FOXN1.p2	NM_011543|Skp1a|21402|S-phase kinase-associated protein 1A	AK078330|Skp1a|21402|S-phase kinase-associated protein 1A	AK002983|Skp1a|21402|S-phase kinase-associated protein 1A	AK012498|Skp1a|21402|S-phase kinase-associated protein 1A	AK014245|Skp1a|21402|S-phase kinase-associated protein 1A	AK027909|Skp1a|21402|S-phase kinase-associated protein 1A	AK088339|Skp1a|21402|S-phase kinase-associated protein 1A	AK160198|Skp1a|21402|S-phase kinase-associated protein 1A	AK158209|Skp1a|21402|S-phase kinase-associated protein 1A	AK166673|Skp1a|21402|S-phase kinase-associated protein 1A	AK152609|Skp1a|21402|S-phase kinase-associated protein 1A	Z47088|Skp1a|21402|S-phase kinase-associated protein 1A	BC002115|Skp1a|21402|S-phase kinase-associated protein 1A	AF083214|Skp1a|21402|S-phase kinase-associated protein 1A
mm9_v1_chr11_-_82577789_82577822	0.570922	FOXN1.p2	BC100457|Cct6b|12467|chaperonin containing Tcp1, subunit 6b (zeta)	NM_009839|Cct6b|12467|chaperonin containing Tcp1, subunit 6b (zeta)	Z50192|Cct6b|12467|chaperonin containing Tcp1, subunit 6b (zeta)	AK076639|Cct6b|12467|chaperonin containing Tcp1, subunit 6b (zeta)
mm9_v1_chr12_+_56225455_56225514	0.570258	FOXN1.p2	AK045530|Fam177a|73385|family with sequence similarity 177, member A	BC049669|Fam177a|73385|family with sequence similarity 177, member A	AK159923|Fam177a|73385|family with sequence similarity 177, member A	BC048158|Fam177a|73385|family with sequence similarity 177, member A	NM_001100116|1700047I17Rik2|100101807|RIKEN cDNA 1700047I17 gene 2	NM_028527|Fam177a|73385|family with sequence similarity 177, member A
mm9_v1_chr5_-_107125618_107125653	0.568412	FOXN1.p2	AK144865|Zfp644|52397|zinc finger protein 644
mm9_v1_chr7_-_108160498_108160526	0.568074	FOXN1.p2	BC006613|P2ry2|18442|purinergic receptor P2Y, G-protein coupled 2	AK005013|P2ry2|18442|purinergic receptor P2Y, G-protein coupled 2	NM_008773|P2ry2|18442|purinergic receptor P2Y, G-protein coupled 2	AK017378|P2ry2|18442|purinergic receptor P2Y, G-protein coupled 2	AK156185|P2ry2|18442|purinergic receptor P2Y, G-protein coupled 2
mm9_v1_chr2_-_156218547_156218745	0.567083	FOXN1.p2	AK013851|2900097C17Rik|347740|RIKEN cDNA 2900097C17 gene	AK136079|2900097C17Rik|347740|RIKEN cDNA 2900097C17 gene	AK077867|2900097C17Rik|347740|RIKEN cDNA 2900097C17 gene
mm9_v1_chr10_+_84218792_84218938	0.564945	FOXN1.p2	NM_001024918|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AK034131|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AK090309|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AY102010|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AY342003|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AB086957|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)
mm9_v1_chrX_-_138740740_138740752	0.563619	FOXN1.p2	AJ131398|Kcne1l|66240|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	NM_021487|Kcne1l|66240|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene
mm9_v1_chr19_+_36422888_36423026	0.562409	FOXN1.p2	AK002387|Pcgf5|76073|polycomb group ring finger 5	AK080025|Pcgf5|76073|polycomb group ring finger 5
mm9_v1_chr9_+_106270889_106271052	0.561622	FOXN1.p2	AK140372|Dusp7|235584|dual specificity phosphatase 7	NM_153459|Dusp7|235584|dual specificity phosphatase 7
mm9_v1_chr13_-_94269673_94269706	0.560327	FOXN1.p2	BC020052|Jmy|57748|junction-mediating and regulatory protein
mm9_v1_chr13_-_107812106_107812216	0.556269	FOXN1.p2	AK037037|Kif2a|16563|kinesin family member 2A	BC006803|Kif2a|16563|kinesin family member 2A	D12644|Kif2a|16563|kinesin family member 2A	NM_001145779|Kif2a|16563|kinesin family member 2A	NM_008442|Kif2a|16563|kinesin family member 2A
mm9_v1_chr9_+_103014279_103014299	0.555667	FOXN1.p2	AK082732|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr16_-_31274947_31275377	0.554888	FOXN1.p2	AK015349|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK053657|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	BC069886|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK002671|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK032462|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK028603|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	BC069885|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK150281|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	NM_025800|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2
mm9_v1_chrX_-_72661877_72661890	0.552488	FOXN1.p2	NM_001039373|Mtcp1|17763|mature T-cell proliferation 1	NM_010839|Mtcp1|17763|mature T-cell proliferation 1	U32332|Mtcp1|17763|mature T-cell proliferation 1	Z35294|Mtcp1|17763|mature T-cell proliferation 1
mm9_v1_chr5_-_149364353_149364422	0.552185	FOXN1.p2	NM_011908|Ubl3|24109|ubiquitin-like 3	BC024507|Ubl3|24109|ubiquitin-like 3	BC043729|Ubl3|24109|ubiquitin-like 3
mm9_v1_chr9_-_41932195_41932209	0.550115	FOXN1.p2	AB015790|Sorl1|20660|sortilin-related receptor, LDLR class A repeats-containing
mm9_v1_chr12_+_85792371_85792472	0.549737	FOXN1.p2	BC120496|Lin52|217708|lin-52 homolog (C. elegans)	BC137693|Lin52|217708|lin-52 homolog (C. elegans)	AK030923|Lin52|217708|lin-52 homolog (C. elegans)	NM_173756|Lin52|217708|lin-52 homolog (C. elegans)
mm9_v1_chr1_-_21952022_21952022	0.548306	FOXN1.p2	AK147264|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5	NM_001160139|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5	NM_023872|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5
mm9_v1_chr6_-_119988624_119988681	0.546988	FOXN1.p2	AK172935|Wnk1|232341|WNK lysine deficient protein kinase 1	BC055788|Wnk1|232341|WNK lysine deficient protein kinase 1	BC046916|Wnk1|232341|WNK lysine deficient protein kinase 1	AK133738|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_001185020|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_001185021|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_198703|Wnk1|232341|WNK lysine deficient protein kinase 1
mm9_v1_chr11_+_11014018_11014018	0.544117	FOXN1.p2	AK141514|Vwc2|319922|von Willebrand factor C domain containing 2	NM_177033|Vwc2|319922|von Willebrand factor C domain containing 2
mm9_v1_chr2_-_11475504_11475547	0.543101	FOXN1.p2	AK143330|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm9_v1_chr6_+_53989925_53989975	0.542713	FOXN1.p2	AK030336|Chn2|69993|chimerin (chimaerin) 2	NM_001163640|Chn2|69993|chimerin (chimaerin) 2
mm9_v1_chr12_+_56300519_56300578	0.542559	FOXN1.p2	AK045530|Fam177a|73385|family with sequence similarity 177, member A	BC049669|Fam177a|73385|family with sequence similarity 177, member A	AK159923|Fam177a|73385|family with sequence similarity 177, member A	BC048158|Fam177a|73385|family with sequence similarity 177, member A	NM_001100116|1700047I17Rik2|100101807|RIKEN cDNA 1700047I17 gene 2	NM_028527|Fam177a|73385|family with sequence similarity 177, member A
mm9_v1_chr15_+_100299514_100299544	0.541658	FOXN1.p2	AF287293|Letmd1|68614|LETM1 domain containing 1	AF401483|Letmd1|68614|LETM1 domain containing 1	AK045256|Letmd1|68614|LETM1 domain containing 1
mm9_v1_chr5_-_122822329_122822391	0.541245	FOXN1.p2	BC019498|1500011H22Rik|68948|RIKEN cDNA 1500011H22 gene	AK005211|1500011H22Rik|68948|RIKEN cDNA 1500011H22 gene	AK150218|1500011H22Rik|68948|RIKEN cDNA 1500011H22 gene
mm9_v1_chr11_+_101329615_101329668	0.540898	FOXN1.p2	BC107022|Rnd2|11858|Rho family GTPase 2	NM_009708|Rnd2|11858|Rho family GTPase 2	BC128475|Rnd2|11858|Rho family GTPase 2	BC127034|Rnd2|11858|Rho family GTPase 2	AF016482|Rnd2|11858|Rho family GTPase 2
mm9_v1_chr3_+_137527448_137527565	0.540529	FOXN1.p2	AK088704|H2afz|51788|H2A histone family, member Z	AK146181|H2afz|51788|H2A histone family, member Z	BC079903|H2afz|51788|H2A histone family, member Z	AK143572|H2afz|51788|H2A histone family, member Z	AK151052|H2afz|51788|H2A histone family, member Z	AK151509|H2afz|51788|H2A histone family, member Z	AK152848|H2afz|51788|H2A histone family, member Z	AK168178|H2afz|51788|H2A histone family, member Z	AK169003|H2afz|51788|H2A histone family, member Z	AY074806|H2afz|51788|H2A histone family, member Z	AK028176|H2afz|51788|H2A histone family, member Z	AK150454|H2afz|51788|H2A histone family, member Z	AK151462|H2afz|51788|H2A histone family, member Z	AK151868|H2afz|51788|H2A histone family, member Z	AK152398|H2afz|51788|H2A histone family, member Z	NM_016750|H2afz|51788|H2A histone family, member Z	U70494|H2afz|51788|H2A histone family, member Z	AK212062|H2afz|51788|H2A histone family, member Z
mm9_v1_chr4_+_116230293_116230350	0.539614	FOXN1.p2	AK037224|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	AK133761|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	AK019942|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	BC066034|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	NM_029868|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1
mm9_v1_chr16_-_32003226_32003372	0.537537	FOXN1.p2	AK158338|Senp5|320213|SUMO/sentrin specific peptidase 5	AY522918|Senp5|320213|SUMO/sentrin specific peptidase 5	BC080830|Senp5|320213|SUMO/sentrin specific peptidase 5	AK043171|Senp5|320213|SUMO/sentrin specific peptidase 5	AK042087|Senp5|320213|SUMO/sentrin specific peptidase 5	AK028177|Senp5|320213|SUMO/sentrin specific peptidase 5	NM_177103|Senp5|320213|SUMO/sentrin specific peptidase 5
mm9_v1_chr10_-_33343965_33344073	0.537467	FOXN1.p2	AK049896|Clvs2|215890|clavesin 2	AK049988|Clvs2|215890|clavesin 2
mm9_v1_chr8_-_41596638_41596711	0.537386	FOXN1.p2	AK044535|Cnot7|18983|CCR4-NOT transcription complex, subunit 7	NM_011135|Cnot7|18983|CCR4-NOT transcription complex, subunit 7
mm9_v1_chr4_+_155078923_155078923	0.535922	FOXN1.p2	NM_026899|Ssu72|68991|Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)
mm9_v1_chr12_+_75008853_75009062	0.535385	FOXN1.p2	NM_010431|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK034087|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK150367|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK138944|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK017853|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	BC026139|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AF003695|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr13_-_101603253_101603421	0.533387	FOXN1.p2	AF461761|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	BC033452|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	AK090176|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	AK088004|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	AK051183|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	NM_022885|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5
mm9_v1_chr17_+_56109884_56109905	0.533165	FOXN1.p2	AK142491|Shd|20420|src homology 2 domain-containing transforming protein D	NM_001159523|Shd|20420|src homology 2 domain-containing transforming protein D	NM_009168|Shd|20420|src homology 2 domain-containing transforming protein D	AB018423|Shd|20420|src homology 2 domain-containing transforming protein D
mm9_v1_chr15_+_100959342_100959354	0.532272	FOXN1.p2	BC015083|Acvrl1|11482|activin A receptor, type II-like 1	BC014291|Acvrl1|11482|activin A receptor, type II-like 1
mm9_v1_chr2_-_32630929_32631152	0.531693	FOXN1.p2	AK133273|Ttc16|338348|tetratricopeptide repeat domain 16	AK164721|Ttc16|338348|tetratricopeptide repeat domain 16	AK089384|Ttc16|338348|tetratricopeptide repeat domain 16
mm9_v1_chr19_+_46576203_46576224	0.531445	FOXN1.p2	BC029283|Trim8|93679|tripartite motif-containing 8
mm9_v1_chr12_+_113858217_113858317	0.53143	FOXN1.p2	AK146907|Adssl1|11565|adenylosuccinate synthetase like 1	NM_007421|Adssl1|11565|adenylosuccinate synthetase like 1	AK089520|Adssl1|11565|adenylosuccinate synthetase like 1	AK149634|Adssl1|11565|adenylosuccinate synthetase like 1	AK150874|Adssl1|11565|adenylosuccinate synthetase like 1	M74495|Adssl1|11565|adenylosuccinate synthetase like 1	BC039943|Adssl1|11565|adenylosuccinate synthetase like 1
mm9_v1_chr7_+_38968802_38968906	0.528437	FOXN1.p2	NM_028166|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	AK146474|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	AK005449|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	AK032342|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	AK032135|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	BC010476|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	BC085480|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	BC092099|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene
mm9_v1_chr17_+_73185961_73186089	0.527894	FOXN1.p2	AK167998|Ypel5|383295|yippee-like 5 (Drosophila)	AK165943|Ypel5|383295|yippee-like 5 (Drosophila)	AK169241|Ypel5|383295|yippee-like 5 (Drosophila)	AK049096|Ypel5|383295|yippee-like 5 (Drosophila)	AK171010|Ypel5|383295|yippee-like 5 (Drosophila)	NM_027166|Ypel5|383295|yippee-like 5 (Drosophila)	AK046281|Ypel5|383295|yippee-like 5 (Drosophila)	AK049644|Ypel5|383295|yippee-like 5 (Drosophila)	AK169986|Ypel5|383295|yippee-like 5 (Drosophila)	AK137446|Ypel5|383295|yippee-like 5 (Drosophila)	AK010201|Ypel5|383295|yippee-like 5 (Drosophila)
mm9_v1_chr13_-_14155541_14155555	0.52718	FOXN1.p2	AB016044|Ggps1|14593|geranylgeranyl diphosphate synthase 1
mm9_v1_chr1_-_95532270_95532276	0.522341	FOXN1.p2	AK148041|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr16_-_96304116_96304132	0.521771	FOXN1.p2	BC056618|Brwd1|93871|bromodomain and WD repeat domain containing 1
mm9_v1_chr19_+_43686803_43686990	0.517737	FOXN1.p2	BC072614|Nkx2-3|18089|NK2 transcription factor related, locus 3 (Drosophila)	NM_008699|Nkx2-3|18089|NK2 transcription factor related, locus 3 (Drosophila)	AK044871|Nkx2-3|18089|NK2 transcription factor related, locus 3 (Drosophila)	AF202036|Nkx2-3|18089|NK2 transcription factor related, locus 3 (Drosophila)	Y11117|Nkx2-3|18089|NK2 transcription factor related, locus 3 (Drosophila)
mm9_v1_chr10_+_117578960_117579000	0.517737	FOXN1.p2	M20823|Mdm1|17245|transformed mouse 3T3 cell double minute 1	M20824|Mdm1|17245|transformed mouse 3T3 cell double minute 1	EU490427|Mdm1|17245|transformed mouse 3T3 cell double minute 1	EU490428|Mdm1|17245|transformed mouse 3T3 cell double minute 1
mm9_v1_chr2_+_83484686_83484734	0.517092	FOXN1.p2	AK050782|Zc3h15|69082|zinc finger CCCH-type containing 15	BC031845|Zc3h15|69082|zinc finger CCCH-type containing 15	NM_026934|Zc3h15|69082|zinc finger CCCH-type containing 15
mm9_v1_chr9_-_96379093_96379128	0.516638	FOXN1.p2	AK006703|Rnf7|19823|ring finger protein 7
mm9_v1_chr19_-_5098381_5098484	0.516237	FOXN1.p2	BC137585|Cnih2|12794|cornichon homolog 2 (Drosophila)	BC137586|Cnih2|12794|cornichon homolog 2 (Drosophila)	BC144739|Cnih2|12794|cornichon homolog 2 (Drosophila)	AB006191|Cnih2|12794|cornichon homolog 2 (Drosophila)	NM_009920|Cnih2|12794|cornichon homolog 2 (Drosophila)
mm9_v1_chr1_-_95532278_95532320	0.515986	FOXN1.p2	BC071218|Stk25|59041|serine/threonine kinase 25 (yeast)	NM_021537|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr3_+_108394195_108394337	0.515752	FOXN1.p2	NM_181400|Wdr47|99512|WD repeat domain 47	AK047357|Wdr47|99512|WD repeat domain 47	AK163422|Wdr47|99512|WD repeat domain 47	BC040337|Wdr47|99512|WD repeat domain 47
mm9_v1_chr5_-_96590868_96591008	0.51512	FOXN1.p2	BC018506|Cnot6l|231464|CCR4-NOT transcription complex, subunit 6-like	NM_144910|Cnot6l|231464|CCR4-NOT transcription complex, subunit 6-like
mm9_v1_chr4_+_116381175_116381228	0.511672	FOXN1.p2	AK002768|Ccdc163|68394|coiled-coil domain containing 163	AK016995|Ccdc163|68394|coiled-coil domain containing 163
mm9_v1_chr2_-_26062008_26062075	0.51019	FOXN1.p2	BC132554|Lhx3|16871|LIM homeobox protein 3	BC132556|Lhx3|16871|LIM homeobox protein 3	L38248|Lhx3|16871|LIM homeobox protein 3	NM_001039653|Lhx3|16871|LIM homeobox protein 3
mm9_v1_chr16_-_14159346_14159388	0.50995	FOXN1.p2	AK158881|4921513D23Rik|223989|RIKEN cDNA 4921513D23 gene	NM_001081154|4921513D23Rik|223989|RIKEN cDNA 4921513D23 gene
mm9_v1_chr10_-_127984766_127984851	0.508705	FOXN1.p2	AK050662|Zc3h10|103284|zinc finger CCCH type containing 10	BC022677|Zc3h10|103284|zinc finger CCCH type containing 10	NM_134003|Zc3h10|103284|zinc finger CCCH type containing 10	AK031312|Zc3h10|103284|zinc finger CCCH type containing 10
mm9_v1_chr7_-_36181628_36181850	0.5075	FOXN1.p2	BC096687|C230052I12Rik|101831|RIKEN cDNA C230052I12 gene	AK153918|C230052I12Rik|101831|RIKEN cDNA C230052I12 gene	AK082457|C230052I12Rik|101831|RIKEN cDNA C230052I12 gene	NM_178643|C230052I12Rik|101831|RIKEN cDNA C230052I12 gene	AK040248|C230052I12Rik|101831|RIKEN cDNA C230052I12 gene	AK031566|C230052I12Rik|101831|RIKEN cDNA C230052I12 gene	AK166481|C230052I12Rik|101831|RIKEN cDNA C230052I12 gene
mm9_v1_chr9_+_78296020_78296030	0.506602	FOXN1.p2	AF369902|Mto1|68291|mitochondrial translation optimization 1 homolog (S. cerevisiae)	BC063256|Mto1|68291|mitochondrial translation optimization 1 homolog (S. cerevisiae)
mm9_v1_chrX_-_71674201_71674273	0.505289	FOXN1.p2	Z11911|G6pdx|14381|glucose-6-phosphate dehydrogenase X-linked	AK088135|G6pdx|14381|glucose-6-phosphate dehydrogenase X-linked	AK148031|G6pdx|14381|glucose-6-phosphate dehydrogenase X-linked	AK165207|G6pdx|14381|glucose-6-phosphate dehydrogenase X-linked
mm9_v1_chr19_+_10763197_10763304	0.505145	FOXN1.p2	AK158833|Vps37c|107305|vacuolar protein sorting 37C (yeast)	AK159309|Vps37c|107305|vacuolar protein sorting 37C (yeast)	AK165826|Vps37c|107305|vacuolar protein sorting 37C (yeast)	AK150606|Vps37c|107305|vacuolar protein sorting 37C (yeast)	BC025865|Vps37c|107305|vacuolar protein sorting 37C (yeast)	NM_181403|Vps37c|107305|vacuolar protein sorting 37C (yeast)
mm9_v1_chrX_-_71527671_71527671	0.504706	FOXN1.p2	BC023246|Dnase1l1|69537|deoxyribonuclease 1-like 1	NM_001172154|Dnase1l1|69537|deoxyribonuclease 1-like 1
mm9_v1_chr1_-_99557957_99557974	0.503891	FOXN1.p2	BC034088|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed
mm9_v1_chr2_-_180869947_180869970	0.503345	FOXN1.p2	AK161558|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2
mm9_v1_chr19_-_54018933_54018969	0.503059	FOXN1.p2	BC040803|Bbip1|66360|BBSome interacting protein 1	AK011271|Bbip1|66360|BBSome interacting protein 1
mm9_v1_chr12_+_81891598_81891755	0.500092	FOXN1.p2	AK129100|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene
mm9_v1_chr17_+_36117612_36117622	0.496289	FOXN1.p2	X65026|Gnl1|14670|guanine nucleotide binding protein-like 1
mm9_v1_chr9_+_20673069_20673163	0.493648	FOXN1.p2	BC031510|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene	NM_175687|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene	AK157146|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene	AK149161|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene	BC043448|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene
mm9_v1_chr14_+_84843366_84843370	0.492685	FOXN1.p2	AK142358|Pcdh17|219228|protocadherin 17	AK147265|Pcdh17|219228|protocadherin 17	NM_001013753|Pcdh17|219228|protocadherin 17
mm9_v1_chr2_-_147011990_147012137	0.492649	FOXN1.p2	AK043561|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	BC138159|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	BC138160|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	U31566|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	AK141002|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	NM_001077632|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	NM_010919|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)
mm9_v1_chr19_-_14672472_14672537	0.492324	FOXN1.p2	AK017548|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)	NM_011600|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chr17_-_25377052_25377092	0.49034	FOXN1.p2	BC055872|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	NM_172529|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	BC023869|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	AK044021|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	AK078230|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	AY465529|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit
mm9_v1_chr5_-_139060905_139060950	0.489369	FOXN1.p2	AK153887|Zfp68|24135|zinc finger protein 68	AK146092|Zfp68|24135|zinc finger protein 68	AK044831|Zfp68|24135|zinc finger protein 68
mm9_v1_chrX_+_96133407_96133568	0.488674	FOXN1.p2	AK045453|Yipf6|77929|Yip1 domain family, member 6	BC048712|Yipf6|77929|Yip1 domain family, member 6	AK079683|Yipf6|77929|Yip1 domain family, member 6	AK020780|Yipf6|77929|Yip1 domain family, member 6	AK143152|Yipf6|77929|Yip1 domain family, member 6
mm9_v1_chr12_-_110132316_110132383	0.487739	FOXN1.p2	BC046232|Wars|22375|tryptophanyl-tRNA synthetase	AK183530|Wars|22375|tryptophanyl-tRNA synthetase	AK150090|Wars|22375|tryptophanyl-tRNA synthetase	AK150267|Wars|22375|tryptophanyl-tRNA synthetase	AK152966|Wars|22375|tryptophanyl-tRNA synthetase	AK153337|Wars|22375|tryptophanyl-tRNA synthetase	NM_001164314|Wars|22375|tryptophanyl-tRNA synthetase
mm9_v1_chr2_+_127073631_127073743	0.487694	FOXN1.p2	AK165880|Tmem127|69470|transmembrane protein 127	AK030324|Tmem127|69470|transmembrane protein 127	BC049832|Tmem127|69470|transmembrane protein 127	NM_175145|Tmem127|69470|transmembrane protein 127	AK050216|Tmem127|69470|transmembrane protein 127
mm9_v1_chr3_+_40512792_40512804	0.487337	FOXN1.p2	AK006599|Slc25a31|73333|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	AK132722|Slc25a31|73333|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	NM_178386|Slc25a31|73333|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31
mm9_v1_chr9_+_86360760_86360843	0.486431	FOXN1.p2	NM_177208|Dopey1|320615|dopey family member 1	AK054511|Dopey1|320615|dopey family member 1	AK082462|Dopey1|320615|dopey family member 1	AK044820|Dopey1|320615|dopey family member 1	AK052544|Dopey1|320615|dopey family member 1	AK045873|Dopey1|320615|dopey family member 1
mm9_v1_chr10_+_79389816_79389883	0.485346	FOXN1.p2	AK154956|Arid3a|13496|AT rich interactive domain 3A (BRIGHT-like)	NM_007880|Arid3a|13496|AT rich interactive domain 3A (BRIGHT-like)	BC050925|Arid3a|13496|AT rich interactive domain 3A (BRIGHT-like)
mm9_v1_chr4_-_150418580_150418616	0.484709	FOXN1.p2	AB013605|Per3|18628|period homolog 3 (Drosophila)	AJ007377|Per3|18628|period homolog 3 (Drosophila)
mm9_v1_chr4_+_138908513_138908551	0.484612	FOXN1.p2	BC129804|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	BC139366|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	AK044277|Ubr4|69116|ubiquitin protein ligase E3 component n-recognin 4	AK089289|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	AK170739|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	AK138637|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	AK161677|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	AK129052|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene
mm9_v1_chr9_+_20673178_20673179	0.483853	FOXN1.p2	AK034516|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene
mm9_v1_chr6_+_83745142_83745245	0.482994	FOXN1.p2	NM_001164187|Nagk|56174|N-acetylglucosamine kinase	AK155292|Nagk|56174|N-acetylglucosamine kinase	BC004689|Nagk|56174|N-acetylglucosamine kinase	AJ242911|Nagk|56174|N-acetylglucosamine kinase
mm9_v1_chr5_+_130647678_130647743	0.482366	FOXN1.p2	NM_001199059|Rabgef1|56715|RAB guanine nucleotide exchange factor (GEF) 1	AF093590|Rabgef1|56715|RAB guanine nucleotide exchange factor (GEF) 1	AK146734|Rabgef1|56715|RAB guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr4_+_12067460_12067484	0.481516	FOXN1.p2	BC050844|Rbm12b|72397|RNA binding motif protein 12B
mm9_v1_chr19_+_46576230_46576286	0.481259	FOXN1.p2	BC082298|Trim8|93679|tripartite motif-containing 8
mm9_v1_chr1_-_95532242_95532249	0.480794	FOXN1.p2	AK152917|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr15_-_96471920_96471958	0.477858	FOXN1.p2	AK047459|Slc38a1|105727|solute carrier family 38, member 1	AK165188|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr1_-_53841997_53842058	0.476893	FOXN1.p2	AK029551|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK165291|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AY092028|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK153108|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	BC006579|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK035693|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK076932|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK083332|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	NM_133810|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)
mm9_v1_chr11_-_118109789_118109956	0.475328	FOXN1.p2	BC057974|Cyth1|19157|cytohesin 1	AK078502|Cyth1|19157|cytohesin 1	AB013464|Cyth1|19157|cytohesin 1	AK220302|Cyth1|19157|cytohesin 1	AK172296|Cyth1|19157|cytohesin 1	AB035538|Cyth1|19157|cytohesin 1	AY126516|Cyth1|19157|cytohesin 1	NM_001112699|Cyth1|19157|cytohesin 1	NM_011180|Cyth1|19157|cytohesin 1
mm9_v1_chr5_-_137755938_137756050	0.475108	FOXN1.p2	
mm9_v1_chr14_-_119324535_119324628	0.474947	FOXN1.p2	AK141247|Dzip1|66573|DAZ interacting protein 1	BC098211|Dzip1|66573|DAZ interacting protein 1
mm9_v1_chr17_+_47027553_47027615	0.474193	FOXN1.p2	NM_178385|Tbcc|72726|tubulin-specific chaperone C
mm9_v1_chr9_+_58430210_58430222	0.473648	FOXN1.p2	AK075610|Nptn|20320|neuroplastin	AK153930|Nptn|20320|neuroplastin	D50463|Nptn|20320|neuroplastin
mm9_v1_chr17_-_85489544_85489623	0.47259	FOXN1.p2	AK083070|Prepl|213760|prolyl endopeptidase-like	BC004612|Prepl|213760|prolyl endopeptidase-like	AK028877|Prepl|213760|prolyl endopeptidase-like	AK163108|Prepl|213760|prolyl endopeptidase-like	AK020557|Prepl|213760|prolyl endopeptidase-like	AK050878|Prepl|213760|prolyl endopeptidase-like	NM_001163622|Prepl|213760|prolyl endopeptidase-like	NM_001163623|Prepl|213760|prolyl endopeptidase-like	NM_145984|Prepl|213760|prolyl endopeptidase-like	NM_001163624|Prepl|213760|prolyl endopeptidase-like
mm9_v1_chr5_-_34278864_34278941	0.472263	FOXN1.p2	AF101435|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	BC038003|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	AK137949|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	AK078760|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	NM_011914|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	AK144173|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	AK088384|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)
mm9_v1_chr18_+_35931332_35931453	0.470752	FOXN1.p2	AK172088|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2	AK148089|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2	AK162093|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2
mm9_v1_chr2_+_155833791_155833870	0.468877	FOXN1.p2	BC057130|Ergic3|66366|ERGIC and golgi 3	AK050285|Ergic3|66366|ERGIC and golgi 3	BC043720|Ergic3|66366|ERGIC and golgi 3	AK009350|Ergic3|66366|ERGIC and golgi 3	AK013942|Ergic3|66366|ERGIC and golgi 3	NM_025516|Ergic3|66366|ERGIC and golgi 3
mm9_v1_chr15_+_80085613_80085722	0.467029	FOXN1.p2	AK003001|Atf4|11911|activating transcription factor 4	NM_009716|Atf4|11911|activating transcription factor 4	BC085169|Atf4|11911|activating transcription factor 4
mm9_v1_chr1_-_95532192_95532205	0.465621	FOXN1.p2	BC029875|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr4_-_135577545_135577644	0.464457	FOXN1.p2	AB025015|Tceb3|27224|transcription elongation factor B (SIII), polypeptide 3	AK147088|Tceb3|27224|transcription elongation factor B (SIII), polypeptide 3	BC049885|Tceb3|27224|transcription elongation factor B (SIII), polypeptide 3	AK036592|Tceb3|27224|transcription elongation factor B (SIII), polypeptide 3	AK145994|Tceb3|27224|transcription elongation factor B (SIII), polypeptide 3	NM_013736|Tceb3|27224|transcription elongation factor B (SIII), polypeptide 3
mm9_v1_chr15_+_100959358_100959377	0.464412	FOXN1.p2	Z31664|Acvrl1|11482|activin A receptor, type II-like 1
mm9_v1_chr9_-_13631482_13631562	0.463487	FOXN1.p2	BC056968|Cep57|74360|centrosomal protein 57	AY251192|Cep57|74360|centrosomal protein 57	AK014873|Cep57|74360|centrosomal protein 57	BC030353|Cep57|74360|centrosomal protein 57	AK129053|Cep57|74360|centrosomal protein 57	NM_026665|Cep57|74360|centrosomal protein 57
mm9_v1_chr10_+_117578842_117578914	0.46181	FOXN1.p2	NM_001162904|Mdm1|17245|transformed mouse 3T3 cell double minute 1	NM_001162905|Mdm1|17245|transformed mouse 3T3 cell double minute 1	NM_010785|Mdm1|17245|transformed mouse 3T3 cell double minute 1	NM_148922|Mdm1|17245|transformed mouse 3T3 cell double minute 1	AK004789|Mdm1|17245|transformed mouse 3T3 cell double minute 1	AK011769|Mdm1|17245|transformed mouse 3T3 cell double minute 1	BC052680|Mdm1|17245|transformed mouse 3T3 cell double minute 1	BC137608|Mdm1|17245|transformed mouse 3T3 cell double minute 1	BC144777|Mdm1|17245|transformed mouse 3T3 cell double minute 1
mm9_v1_chr9_-_21397188_21397310	0.457729	FOXN1.p2	BC002282|Yipf2|74766|Yip1 domain family, member 2	NM_138303|Yipf2|74766|Yip1 domain family, member 2	BC003289|Yipf2|74766|Yip1 domain family, member 2	AK033705|Yipf2|74766|Yip1 domain family, member 2	AK133631|Yipf2|74766|Yip1 domain family, member 2	AK004959|Yipf2|74766|Yip1 domain family, member 2
mm9_v1_chr4_+_155079379_155079488	0.456124	FOXN1.p2	AK019168|Ssu72|68991|Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)
mm9_v1_chr11_+_103635438_103635563	0.452095	FOXN1.p2	AK132516|Wnt3|22415|wingless-related MMTV integration site 3	NM_009521|Wnt3|22415|wingless-related MMTV integration site 3	M32502|Wnt3|22415|wingless-related MMTV integration site 3	BC152305|Wnt3|22415|wingless-related MMTV integration site 3	BC152537|Wnt3|22415|wingless-related MMTV integration site 3	BC152304|Wnt3|22415|wingless-related MMTV integration site 3	AK141154|Wnt3|22415|wingless-related MMTV integration site 3	BC141271|Wnt3|22415|wingless-related MMTV integration site 3	BC141274|Wnt3|22415|wingless-related MMTV integration site 3
mm9_v1_chr11_+_97524725_97524725	0.452045	FOXN1.p2	NM_139311|Mllt6|246198|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
mm9_v1_chr11_-_76660476_76660569	0.448943	FOXN1.p2	AK142583|Cpd|12874|carboxypeptidase D	AK134907|Cpd|12874|carboxypeptidase D	AK137737|Cpd|12874|carboxypeptidase D	D85391|Cpd|12874|carboxypeptidase D	NM_007754|Cpd|12874|carboxypeptidase D
mm9_v1_chr9_+_59465036_59465209	0.447974	FOXN1.p2	NM_029922|Parp6|67287|poly (ADP-ribose) polymerase family, member 6	BC052064|Parp6|67287|poly (ADP-ribose) polymerase family, member 6	AK076321|Parp6|67287|poly (ADP-ribose) polymerase family, member 6	AK007206|Parp6|67287|poly (ADP-ribose) polymerase family, member 6	AK035349|Parp6|67287|poly (ADP-ribose) polymerase family, member 6	AK021076|Parp6|67287|poly (ADP-ribose) polymerase family, member 6
mm9_v1_chr4_+_119406425_119406450	0.447785	FOXN1.p2	BC024097|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	BC049859|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3
mm9_v1_chr2_+_22924846_22924986	0.446964	FOXN1.p2	AK005001|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	BC061484|Acbd5|74159|acyl-Coenzyme A binding domain containing 5
mm9_v1_chr10_-_13272899_13272947	0.443523	FOXN1.p2	BC037606|Pex3|56535|peroxisomal biogenesis factor 3	AK005315|Pex3|56535|peroxisomal biogenesis factor 3	AK012827|Pex3|56535|peroxisomal biogenesis factor 3	AK146934|Pex3|56535|peroxisomal biogenesis factor 3	NM_001164195|Pex3|56535|peroxisomal biogenesis factor 3	NM_019961|Pex3|56535|peroxisomal biogenesis factor 3
mm9_v1_chr1_+_34529567_34529633	0.443359	FOXN1.p2	AK014043|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18
mm9_v1_chr5_-_102498929_102498975	0.442002	FOXN1.p2	AK047077|Wdfy3|72145|WD repeat and FYVE domain containing 3	AY336569|Wdfy3|72145|WD repeat and FYVE domain containing 3	NM_172882|Wdfy3|72145|WD repeat and FYVE domain containing 3
mm9_v1_chr2_-_174264400_174264522	0.437516	FOXN1.p2	AK008370|Ctsz|64138|cathepsin Z	AF197479|Ctsz|64138|cathepsin Z	AK150329|Ctsz|64138|cathepsin Z	AK150894|Ctsz|64138|cathepsin Z	AK153147|Ctsz|64138|cathepsin Z	AK159826|Ctsz|64138|cathepsin Z	AK151440|Ctsz|64138|cathepsin Z	AK159118|Ctsz|64138|cathepsin Z	AK002710|Ctsz|64138|cathepsin Z	AK151585|Ctsz|64138|cathepsin Z	AK151994|Ctsz|64138|cathepsin Z	AK160001|Ctsz|64138|cathepsin Z	AK160028|Ctsz|64138|cathepsin Z	AK166047|Ctsz|64138|cathepsin Z	AK170963|Ctsz|64138|cathepsin Z	AK150947|Ctsz|64138|cathepsin Z	AK010912|Ctsz|64138|cathepsin Z	AK004095|Ctsz|64138|cathepsin Z	BC008619|Ctsz|64138|cathepsin Z	NM_022325|Ctsz|64138|cathepsin Z	AJ242663|Ctsz|64138|cathepsin Z	AF136277|Ctsz|64138|cathepsin Z	AK159618|Ctsz|64138|cathepsin Z	AK160354|Ctsz|64138|cathepsin Z
mm9_v1_chr16_+_35022488_35022506	0.435046	FOXN1.p2	NM_023587|Ptplb|70757|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b
mm9_v1_chrX_+_162676903_162676907	0.43472	FOXN1.p2	AF254871|Gpm6b|14758|glycoprotein m6b	AF254876|Gpm6b|14758|glycoprotein m6b	AF254877|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr11_-_95574067_95574079	0.434045	FOXN1.p2	AK027957|1110035M17Rik|432396|RIKEN cDNA 1110035M17 gene
mm9_v1_chr4_+_147314951_147315041	0.433935	FOXN1.p2	AK011059|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	AK153761|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	NM_029841|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	BC012878|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	AK173332|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene
mm9_v1_chr4_-_106351493_106351548	0.433139	FOXN1.p2	AK012652|Ttc4|72354|tetratricopeptide repeat domain 4	AK088684|Ttc4|72354|tetratricopeptide repeat domain 4	AK133931|Ttc4|72354|tetratricopeptide repeat domain 4	NM_028209|Ttc4|72354|tetratricopeptide repeat domain 4
mm9_v1_chr9_+_75161942_75162049	0.431017	FOXN1.p2	AK169323|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5	AK050564|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5	AK148175|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5	L34290|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5	NM_138719|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5
mm9_v1_chr1_-_95532227_95532238	0.429995	FOXN1.p2	BC052913|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr10_+_62562532_62562550	0.429192	FOXN1.p2	BC092234|Atoh7|53404|atonal homolog 7 (Drosophila)
mm9_v1_chr6_-_8728094_8728149	0.428154	FOXN1.p2	BC002030|Ica1|15893|islet cell autoantigen 1	AK192988|Ica1|15893|islet cell autoantigen 1	U26459|Ica1|15893|islet cell autoantigen 1
mm9_v1_chr19_+_3768145_3768217	0.426956	FOXN1.p2	BC011214|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	AK139255|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	BC075709|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	AK152179|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)
mm9_v1_chr2_-_127073464_127073551	0.426483	FOXN1.p2	AK028376|Ciao1|26371|cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae)	AK004129|Ciao1|26371|cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae)	AK002314|Ciao1|26371|cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae)	NM_025296|Ciao1|26371|cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae)
mm9_v1_chr5_+_135644245_135644412	0.426047	FOXN1.p2	AK160439|Bcl7b|12054|B-cell CLL/lymphoma 7B	AK131643|Bcl7b|12054|B-cell CLL/lymphoma 7B	AK155076|Bcl7b|12054|B-cell CLL/lymphoma 7B	AJ011145|Bcl7b|12054|B-cell CLL/lymphoma 7B	AK186334|Bcl7b|12054|B-cell CLL/lymphoma 7B
mm9_v1_chr11_-_95171479_95171519	0.426031	FOXN1.p2	AK169458|Myst2|217127|MYST histone acetyltransferase 2	BC057102|Myst2|217127|MYST histone acetyltransferase 2	DQ076247|Myst2|217127|MYST histone acetyltransferase 2	AK160750|Myst2|217127|MYST histone acetyltransferase 2	AK170389|Myst2|217127|MYST histone acetyltransferase 2	BC048904|Myst2|217127|MYST histone acetyltransferase 2	AK164336|Myst2|217127|MYST histone acetyltransferase 2
mm9_v1_chr13_+_49063750_49063790	0.42547	FOXN1.p2	AK014080|C030044B11Rik|68128|RIKEN cDNA C030044B11 gene	AK021143|C030044B11Rik|68128|RIKEN cDNA C030044B11 gene
mm9_v1_chr3_+_36962577_36962599	0.424543	FOXN1.p2	NM_009350|Adad1|21744|adenosine deaminase domain containing 1 (testis specific)	X84693|Adad1|21744|adenosine deaminase domain containing 1 (testis specific)	BC107346|Adad1|21744|adenosine deaminase domain containing 1 (testis specific)
mm9_v1_chr19_+_10763393_10763462	0.418212	FOXN1.p2	AK030717|Vps37c|107305|vacuolar protein sorting 37C (yeast)
mm9_v1_chr5_-_115750940_115750978	0.417963	FOXN1.p2	AK002522|Dynll1|56455|dynein light chain LC8-type 1	AK010614|Dynll1|56455|dynein light chain LC8-type 1	AK010685|Dynll1|56455|dynein light chain LC8-type 1	AK013721|Dynll1|56455|dynein light chain LC8-type 1	AK013725|Dynll1|56455|dynein light chain LC8-type 1	AK082923|Dynll1|56455|dynein light chain LC8-type 1	AK147977|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr2_-_32568570_32568641	0.416602	FOXN1.p2	AK155733|Cdk9|107951|cyclin-dependent kinase 9 (CDC2-related kinase)
mm9_v1_chr14_+_32308241_32308282	0.416573	FOXN1.p2	AK044181|Eaf1|74427|ELL associated factor 1	NM_028932|Eaf1|74427|ELL associated factor 1
mm9_v1_chr6_+_66986637_66986648	0.416092	FOXN1.p2	AK054076|E230016M11Rik|320172|RIKEN cDNA E230016M11 gene
mm9_v1_chr1_+_122237151_122237184	0.415274	FOXN1.p2	AK144471|C1ql2|226359|complement component 1, q subcomponent-like 2	BC040774|C1ql2|226359|complement component 1, q subcomponent-like 2	NM_207233|C1ql2|226359|complement component 1, q subcomponent-like 2
mm9_v1_chr12_+_103707401_103707414	0.415197	FOXN1.p2	BC016883|Golga5|27277|golgi autoantigen, golgin subfamily a, 5
mm9_v1_chr11_+_70577932_70578003	0.414501	FOXN1.p2	AK045753|Zfp3|193043|zinc finger protein 3	NM_177565|Zfp3|193043|zinc finger protein 3	BC096463|Zfp3|193043|zinc finger protein 3
mm9_v1_chr4_+_138908512_138908512	0.41266	FOXN1.p2	AK049061|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	AK077496|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene
mm9_v1_chr11_-_102417457_102417523	0.40992	FOXN1.p2	AK135410|Gpatch8|237943|G patch domain containing 8	NM_001159492|Gpatch8|237943|G patch domain containing 8
mm9_v1_chr4_+_13670582_13670631	0.40888	FOXN1.p2	AK032132|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr7_+_26006430_26006482	0.407841	FOXN1.p2	AK050839|Zfp526|210172|zinc finger protein 526	NM_175436|Zfp526|210172|zinc finger protein 526	AK051798|Zfp526|210172|zinc finger protein 526
mm9_v1_chr10_-_33927262_33927356	0.406924	FOXN1.p2	AK045065|Dse|212898|dermatan sulfate epimerase	BC053095|Dse|212898|dermatan sulfate epimerase	NM_172508|Dse|212898|dermatan sulfate epimerase
mm9_v1_chr2_-_153458365_153458496	0.404228	FOXN1.p2	AK177311|Commd7|99311|COMM domain containing 7	BC065794|Commd7|99311|COMM domain containing 7	AK164805|Commd7|99311|COMM domain containing 7	BC092215|Commd7|99311|COMM domain containing 7	BC003310|Commd7|99311|COMM domain containing 7	AK077349|Commd7|99311|COMM domain containing 7	AK089926|Commd7|99311|COMM domain containing 7	AK169037|Commd7|99311|COMM domain containing 7	AK046582|Commd7|99311|COMM domain containing 7	AK008447|Commd7|99311|COMM domain containing 7	BC094216|Commd7|99311|COMM domain containing 7	AK078774|Commd7|99311|COMM domain containing 7	AK009274|Commd7|99311|COMM domain containing 7
mm9_v1_chr9_+_106073265_106073336	0.403881	FOXN1.p2	BC094419|Wdr82|77305|WD repeat domain containing 82	BC157945|Wdr82|77305|WD repeat domain containing 82	BC158054|Wdr82|77305|WD repeat domain containing 82	BC157943|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr4_+_134486863_134486909	0.402399	FOXN1.p2	AK003787|Syf2|68592|SYF2 homolog, RNA splicing factor (S. cerevisiae)	AY033432|Syf2|68592|SYF2 homolog, RNA splicing factor (S. cerevisiae)	NM_026780|Syf2|68592|SYF2 homolog, RNA splicing factor (S. cerevisiae)	AK152794|Syf2|68592|SYF2 homolog, RNA splicing factor (S. cerevisiae)	BC051484|Syf2|68592|SYF2 homolog, RNA splicing factor (S. cerevisiae)
mm9_v1_chr12_+_106923552_106923650	0.402079	FOXN1.p2	NM_178613|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK171097|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	BC031494|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK168962|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK042664|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK079775|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK020785|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK029484|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene
mm9_v1_chr9_+_78296012_78296019	0.401977	FOXN1.p2	NM_026658|Mto1|68291|mitochondrial translation optimization 1 homolog (S. cerevisiae)	AK019088|Mto1|68291|mitochondrial translation optimization 1 homolog (S. cerevisiae)	AK017573|Mto1|68291|mitochondrial translation optimization 1 homolog (S. cerevisiae)
mm9_v1_chr11_+_70658271_70658306	0.400385	FOXN1.p2	BC060166|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	BC009814|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	BC080274|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AK019413|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AK151901|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AK137236|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1
mm9_v1_chr13_+_14156038_14156092	0.397101	FOXN1.p2	AK136105|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	AK041414|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	NM_194262|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	NM_198122|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	AK161669|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	AK031062|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)
mm9_v1_chr9_+_75162059_75162070	0.395507	FOXN1.p2	AK149908|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5
mm9_v1_chr15_+_74346835_74346839	0.395368	FOXN1.p2	AK147494|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr5_-_147032932_147033023	0.395073	FOXN1.p2	AY039004|Rnf6|74132|ring finger protein (C3H2C3 type) 6	AK049503|Rnf6|74132|ring finger protein (C3H2C3 type) 6	BC138545|Rnf6|74132|ring finger protein (C3H2C3 type) 6	AK004745|Rnf6|74132|ring finger protein (C3H2C3 type) 6	NM_028774|Rnf6|74132|ring finger protein (C3H2C3 type) 6
mm9_v1_chr18_-_35821788_35821845	0.394641	FOXN1.p2	BC060950|Spata24|71242|spermatogenesis associated 24	AK017218|Spata24|71242|spermatogenesis associated 24	AK016341|Spata24|71242|spermatogenesis associated 24	AK012241|Spata24|71242|spermatogenesis associated 24	AY730532|Spata24|71242|spermatogenesis associated 24	NM_027733|Spata24|71242|spermatogenesis associated 24	NM_029485|Spata24|71242|spermatogenesis associated 24
mm9_v1_chr5_-_92483744_92484066	0.392744	FOXN1.p2	AK169571|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK220349|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr7_+_104480819_104480860	0.391271	FOXN1.p2	NM_001039039|Kctd21|622320|potassium channel tetramerisation domain containing 21	AK141547|Kctd21|622320|potassium channel tetramerisation domain containing 21
mm9_v1_chr2_+_128793137_128793209	0.390881	FOXN1.p2	AK050503|Zc3h6|78751|zinc finger CCCH type containing 6	NM_178404|Zc3h6|78751|zinc finger CCCH type containing 6	AK013610|Zc3h6|78751|zinc finger CCCH type containing 6	AK019345|Zc3h6|78751|zinc finger CCCH type containing 6	AK039171|Zc3h6|78751|zinc finger CCCH type containing 6	AK014766|Zc3h6|78751|zinc finger CCCH type containing 6	BC058173|Zc3h6|78751|zinc finger CCCH type containing 6
mm9_v1_chr10_-_120416369_120416397	0.390602	FOXN1.p2	AF112300|Lemd3|380664|LEM domain containing 3	NM_001081193|Lemd3|380664|LEM domain containing 3
mm9_v1_chr2_+_109731003_109731053	0.389854	FOXN1.p2	AK135810|Lin7c|22343|lin-7 homolog C (C. elegans)	AK083299|Lin7c|22343|lin-7 homolog C (C. elegans)	AK015399|Lin7c|22343|lin-7 homolog C (C. elegans)	AK078923|Lin7c|22343|lin-7 homolog C (C. elegans)	AK128989|Lin7c|22343|lin-7 homolog C (C. elegans)	BC052471|Lin7c|22343|lin-7 homolog C (C. elegans)	AK133531|Lin7c|22343|lin-7 homolog C (C. elegans)	AF173083|Lin7c|22343|lin-7 homolog C (C. elegans)	AF087695|Lin7c|22343|lin-7 homolog C (C. elegans)	BC046966|Lin7c|22343|lin-7 homolog C (C. elegans)	NM_011699|Lin7c|22343|lin-7 homolog C (C. elegans)	AK161076|Lin7c|22343|lin-7 homolog C (C. elegans)
mm9_v1_chr3_+_108086993_108087000	0.384267	FOXN1.p2	AK147442|Sort1|20661|sortilin 1
mm9_v1_chr4_+_138908480_138908511	0.383582	FOXN1.p2	NM_001039200|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	NM_146157|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene
mm9_v1_chr2_-_127073455_127073460	0.377525	FOXN1.p2	BC004089|Ciao1|26371|cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae)
mm9_v1_chr4_-_153534748_153534817	0.376656	FOXN1.p2	BC019544|Tprgl|67808|transformation related protein 63 regulated like	AK004777|Tprgl|67808|transformation related protein 63 regulated like	AK155413|Tprgl|67808|transformation related protein 63 regulated like	NM_026388|Tprgl|67808|transformation related protein 63 regulated like
mm9_v1_chr2_+_156439426_156439464	0.37068	FOXN1.p2	NM_146128|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr14_-_70689083_70689258	0.369876	FOXN1.p2	BC046617|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform	BC141079|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform	BC145347|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform	M81475|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform	NM_008915|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform	AK015002|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform
mm9_v1_chr5_+_130620730_130620855	0.369772	FOXN1.p2	AK162568|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK083583|Kctd7|212919|potassium channel tetramerisation domain containing 7	NM_172509|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK029942|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK034583|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK140606|Kctd7|212919|potassium channel tetramerisation domain containing 7	BC139070|Kctd7|212919|potassium channel tetramerisation domain containing 7	BC141201|Kctd7|212919|potassium channel tetramerisation domain containing 7
mm9_v1_chr10_+_39089853_39089891	0.369577	FOXN1.p2	M27266|Fyn|14360|Fyn proto-oncogene	U70324|Fyn|14360|Fyn proto-oncogene
mm9_v1_chr9_-_13631432_13631439	0.368039	FOXN1.p2	AK019414|Cep57|74360|centrosomal protein 57	AK167523|Cep57|74360|centrosomal protein 57
mm9_v1_chr18_+_45719464_45719553	0.367686	FOXN1.p2	AK087908|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK050390|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr2_+_130665909_130665931	0.367278	FOXN1.p2	AK021082|C030014O09Rik|77463|RIKEN cDNA C030014O09 gene
mm9_v1_chr5_-_31597792_31598351	0.365833	FOXN1.p2	BC139278|Fndc4|64339|fibronectin type III domain containing 4	BC139292|Fndc4|64339|fibronectin type III domain containing 4	AK018154|Fndc4|64339|fibronectin type III domain containing 4	AK013203|Fndc4|64339|fibronectin type III domain containing 4	AK163183|Fndc4|64339|fibronectin type III domain containing 4	NM_022424|Fndc4|64339|fibronectin type III domain containing 4
mm9_v1_chr2_-_33743465_33743465	0.365704	FOXN1.p2	BC059907|Fam125b|72543|family with sequence similarity 125, member B	NM_175184|Fam125b|72543|family with sequence similarity 125, member B
mm9_v1_chr14_+_32308287_32308372	0.365566	FOXN1.p2	BC079658|Eaf1|74427|ELL associated factor 1	AK036661|Eaf1|74427|ELL associated factor 1	AK044737|Eaf1|74427|ELL associated factor 1
mm9_v1_chr8_+_108535363_108535459	0.363209	FOXN1.p2	AK009391|Dus2l|66369|dihydrouridine synthase 2-like (SMM1, S. cerevisiae)	AK077451|Dus2l|66369|dihydrouridine synthase 2-like (SMM1, S. cerevisiae)	NM_025518|Dus2l|66369|dihydrouridine synthase 2-like (SMM1, S. cerevisiae)	BC116934|Dus2l|66369|dihydrouridine synthase 2-like (SMM1, S. cerevisiae)	BC116936|Dus2l|66369|dihydrouridine synthase 2-like (SMM1, S. cerevisiae)
mm9_v1_chr17_+_47027617_47027637	0.362114	FOXN1.p2	AK132036|Tbcc|72726|tubulin-specific chaperone C	AK012950|Tbcc|72726|tubulin-specific chaperone C	BC019476|Tbcc|72726|tubulin-specific chaperone C	BC083164|Tbcc|72726|tubulin-specific chaperone C
mm9_v1_chr6_+_71657791_71657963	0.361858	FOXN1.p2	AK035238|Reep1|52250|receptor accessory protein 1	AK045056|Reep1|52250|receptor accessory protein 1	NM_178608|Reep1|52250|receptor accessory protein 1	AK053158|Reep1|52250|receptor accessory protein 1	AK136916|Reep1|52250|receptor accessory protein 1	BC046826|Reep1|52250|receptor accessory protein 1	AY562229|Reep1|52250|receptor accessory protein 1
mm9_v1_chr3_-_90313339_90313430	0.361147	FOXN1.p2	AK004558|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	NM_023215|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AB041654|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK152492|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	BC066837|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	BC051939|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK005377|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK047914|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK132769|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK135914|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK010866|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK077960|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene
mm9_v1_chr10_-_25798407_25798455	0.361083	FOXN1.p2	AK032569|Tmem200a|77220|transmembrane protein 200A	AK163932|Tmem200a|77220|transmembrane protein 200A
mm9_v1_chr3_+_96439769_96439769	0.360617	FOXN1.p2	NM_001162388|Pex11b|18632|peroxisomal biogenesis factor 11 beta
mm9_v1_chr19_-_5098486_5098495	0.35954	FOXN1.p2	BC103797|Cnih2|12794|cornichon homolog 2 (Drosophila)
mm9_v1_chr3_+_105255247_105255337	0.35681	FOXN1.p2	NM_001039347|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AK147574|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr13_+_89680240_89680277	0.355391	FOXN1.p2	AK032750|Hapln1|12950|hyaluronan and proteoglycan link protein 1	NM_013500|Hapln1|12950|hyaluronan and proteoglycan link protein 1
mm9_v1_chr17_-_26338106_26338229	0.354446	FOXN1.p2	L42463|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	U73198|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	AK144321|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	BC158003|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma
mm9_v1_chr14_-_70689267_70689330	0.351953	FOXN1.p2	AK133393|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform
mm9_v1_chr9_+_66198234_66198299	0.350898	FOXN1.p2	AK047003|Herc1|235439|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1	NM_145617|Herc1|235439|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1
mm9_v1_chrX_+_155693729_155693868	0.350592	FOXN1.p2	AK154778|Rps6ka3|110651|ribosomal protein S6 kinase polypeptide 3
mm9_v1_chr7_-_86293852_86293959	0.349829	FOXN1.p2	AB021130|Mfge8|17304|milk fat globule-EGF factor 8 protein	AB025280|Mfge8|17304|milk fat globule-EGF factor 8 protein	Y11684|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK209209|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC018577|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC003904|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC003892|Mfge8|17304|milk fat globule-EGF factor 8 protein	M38337|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK089211|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK145183|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK169997|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK170935|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK171143|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK148371|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK087555|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK152088|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK155047|Mfge8|17304|milk fat globule-EGF factor 8 protein	NM_001045489|Mfge8|17304|milk fat globule-EGF factor 8 protein	NM_008594|Mfge8|17304|milk fat globule-EGF factor 8 protein
mm9_v1_chr6_-_39068340_39068419	0.349211	FOXN1.p2	AK036886|Parp12|243771|poly (ADP-ribose) polymerase family, member 12	NM_172893|Parp12|243771|poly (ADP-ribose) polymerase family, member 12
mm9_v1_chr13_-_85428605_85428737	0.34852	FOXN1.p2	BC065082|Rasa1|218397|RAS p21 protein activator 1	AK161497|Rasa1|218397|RAS p21 protein activator 1
mm9_v1_chr2_-_56967331_56967448	0.347983	FOXN1.p2	S53744|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2	AK158607|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2	NM_013613|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2
mm9_v1_chr2_+_157563136_157563225	0.347605	FOXN1.p2	NM_025680|Ctnnbl1|66642|catenin, beta like 1	BC050787|Ctnnbl1|66642|catenin, beta like 1	AY009405|Ctnnbl1|66642|catenin, beta like 1	AK145888|Ctnnbl1|66642|catenin, beta like 1	AK146274|Ctnnbl1|66642|catenin, beta like 1	AK145147|Ctnnbl1|66642|catenin, beta like 1	AK077616|Ctnnbl1|66642|catenin, beta like 1	AK145598|Ctnnbl1|66642|catenin, beta like 1	AK145719|Ctnnbl1|66642|catenin, beta like 1	AK044690|Ctnnbl1|66642|catenin, beta like 1	AK010547|Ctnnbl1|66642|catenin, beta like 1
mm9_v1_chr18_+_65590615_65590687	0.346713	FOXN1.p2	AK164626|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	AK041919|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	AK085071|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	NM_172833|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	AK045200|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	BC110487|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	BC110488|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1
mm9_v1_chr6_+_108733075_108733279	0.346495	FOXN1.p2	AK152798|Arl8b|67166|ADP-ribosylation factor-like 8B	AK144177|Arl8b|67166|ADP-ribosylation factor-like 8B	AK076292|Arl8b|67166|ADP-ribosylation factor-like 8B	AK146307|Arl8b|67166|ADP-ribosylation factor-like 8B	AK159348|Arl8b|67166|ADP-ribosylation factor-like 8B	AK170645|Arl8b|67166|ADP-ribosylation factor-like 8B	AK012024|Arl8b|67166|ADP-ribosylation factor-like 8B	AK075941|Arl8b|67166|ADP-ribosylation factor-like 8B	AK151036|Arl8b|67166|ADP-ribosylation factor-like 8B	AK149822|Arl8b|67166|ADP-ribosylation factor-like 8B	BC013719|Arl8b|67166|ADP-ribosylation factor-like 8B	AK009279|Arl8b|67166|ADP-ribosylation factor-like 8B	AK169929|Arl8b|67166|ADP-ribosylation factor-like 8B	AK005999|Arl8b|67166|ADP-ribosylation factor-like 8B	AK195129|Arl8b|67166|ADP-ribosylation factor-like 8B	AB185206|Arl8b|67166|ADP-ribosylation factor-like 8B	CT010337|Arl8b|67166|ADP-ribosylation factor-like 8B	AK203754|Arl8b|67166|ADP-ribosylation factor-like 8B
mm9_v1_chr5_+_130007103_130007146	0.344866	FOXN1.p2	NM_172276|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	AK140369|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	AK031872|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	AK088182|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	AK170748|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	BC057314|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	BC034336|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	BC034665|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	BC013466|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	BC036315|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)
mm9_v1_chr3_+_17954689_17954736	0.342559	FOXN1.p2	AF218865|Bhlhe22|59058|basic helix-loop-helix family, member e22
mm9_v1_chr1_-_37597847_37597897	0.340424	FOXN1.p2	AK155724|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm9_v1_chr11_-_95375878_95375924	0.340405	FOXN1.p2	AK158760|Nxph3|104079|neurexophilin 3	NM_130858|Nxph3|104079|neurexophilin 3
mm9_v1_chr8_+_96910392_96910428	0.340292	FOXN1.p2	AK081688|Herpud1|64209|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	AK159500|Herpud1|64209|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	AK165832|Herpud1|64209|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	AB034991|Herpud1|64209|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	NM_022331|Herpud1|64209|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	AK172874|Herpud1|64209|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	BC013523|Herpud1|64209|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
mm9_v1_chr19_+_46576137_46576194	0.338644	FOXN1.p2	NM_053100|Trim8|93679|tripartite motif-containing 8	AK155303|Trim8|93679|tripartite motif-containing 8
mm9_v1_chr9_-_88333710_88333807	0.338331	FOXN1.p2	AK046839|Snx14|244962|sorting nexin 14	AK049371|Snx14|244962|sorting nexin 14	AK082389|Snx14|244962|sorting nexin 14	BC080799|Snx14|244962|sorting nexin 14	NM_172926|Snx14|244962|sorting nexin 14
mm9_v1_chr3_+_17954500_17954591	0.337544	FOXN1.p2	AK047201|Bhlhe22|59058|basic helix-loop-helix family, member e22
mm9_v1_chr7_+_16894925_16895103	0.336502	FOXN1.p2	NM_133234|Bbc3|170770|BCL2 binding component 3	BC044782|Bbc3|170770|BCL2 binding component 3	AF332560|Bbc3|170770|BCL2 binding component 3	BC060370|Bbc3|170770|BCL2 binding component 3	BC147261|Bbc3|170770|BCL2 binding component 3	BC147262|Bbc3|170770|BCL2 binding component 3
mm9_v1_chr11_-_4494790_4494809	0.33547	FOXN1.p2	BC032166|Mtmr3|74302|myotubularin related protein 3	AK141138|Mtmr3|74302|myotubularin related protein 3	BC081544|Mtmr3|74302|myotubularin related protein 3
mm9_v1_chr18_-_38158371_38158561	0.333694	FOXN1.p2	AK036638|Arap3|106952|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	AF469622|Arap3|106952|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
mm9_v1_chr9_-_96378951_96379045	0.332092	FOXN1.p2	AK007588|Rnf7|19823|ring finger protein 7	BC011127|Rnf7|19823|ring finger protein 7	AK002628|Rnf7|19823|ring finger protein 7	AK003248|Rnf7|19823|ring finger protein 7	AK003963|Rnf7|19823|ring finger protein 7	AK011328|Rnf7|19823|ring finger protein 7	AK146030|Rnf7|19823|ring finger protein 7	NM_011279|Rnf7|19823|ring finger protein 7	AF092877|Rnf7|19823|ring finger protein 7
mm9_v1_chr12_-_80273320_80273473	0.328712	FOXN1.p2	AF035821|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	AF035208|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	BC009810|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	BC080204|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	BC002290|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	AK160624|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	AK002289|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	NM_016800|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog
mm9_v1_chr19_+_46576779_46576908	0.327481	FOXN1.p2	AF281047|Trim8|93679|tripartite motif-containing 8	BC152343|Trim8|93679|tripartite motif-containing 8	BC152344|Trim8|93679|tripartite motif-containing 8	BC037065|Trim8|93679|tripartite motif-containing 8	BC060094|Trim8|93679|tripartite motif-containing 8
mm9_v1_chr6_+_4853319_4853431	0.327152	FOXN1.p2	AB091828|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	NM_181595|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	AK158559|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	BC053748|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm9_v1_chr11_-_53841589_53841653	0.326619	FOXN1.p2	AB016257|Slc22a4|30805|solute carrier family 22 (organic cation transporter), member 4	BC010590|Slc22a4|30805|solute carrier family 22 (organic cation transporter), member 4	NM_019687|Slc22a4|30805|solute carrier family 22 (organic cation transporter), member 4	AK143595|Slc22a4|30805|solute carrier family 22 (organic cation transporter), member 4
mm9_v1_chr4_-_106351290_106351290	0.326555	FOXN1.p2	AK005923|Ttc4|72354|tetratricopeptide repeat domain 4	NM_001172073|Ttc4|72354|tetratricopeptide repeat domain 4
mm9_v1_chr10_-_42303392_42303437	0.326478	FOXN1.p2	NM_152229|Nr2e1|21907|nuclear receptor subfamily 2, group E, member 1	AK132201|Nr2e1|21907|nuclear receptor subfamily 2, group E, member 1	S77482|Nr2e1|21907|nuclear receptor subfamily 2, group E, member 1	BC057104|Nr2e1|21907|nuclear receptor subfamily 2, group E, member 1
mm9_v1_chr7_-_138506189_138506246	0.326235	FOXN1.p2	BC052432|2310057M21Rik|68277|RIKEN cDNA 2310057M21 gene	AK019097|2310057M21Rik|68277|RIKEN cDNA 2310057M21 gene	NM_026655|2310057M21Rik|68277|RIKEN cDNA 2310057M21 gene	AK148008|2310057M21Rik|68277|RIKEN cDNA 2310057M21 gene	BC044749|2310057M21Rik|68277|RIKEN cDNA 2310057M21 gene	AK088850|2310057M21Rik|68277|RIKEN cDNA 2310057M21 gene
mm9_v1_chr19_-_5118229_5118407	0.326217	FOXN1.p2	AF055666|Klc2|16594|kinesin light chain 2	BC014845|Klc2|16594|kinesin light chain 2	AK141439|Klc2|16594|kinesin light chain 2	NM_008451|Klc2|16594|kinesin light chain 2
mm9_v1_chr2_-_121632749_121632811	0.326187	FOXN1.p2	AK054484|Frmd5|228564|FERM domain containing 5	BC062889|Frmd5|228564|FERM domain containing 5	AK146383|Frmd5|228564|FERM domain containing 5	AK048865|Frmd5|228564|FERM domain containing 5	NM_172673|Frmd5|228564|FERM domain containing 5
mm9_v1_chr7_-_54387915_54388047	0.324521	FOXN1.p2	NM_001163565|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5	BC079592|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5
mm9_v1_chr16_-_37539763_37539874	0.320073	FOXN1.p2	AK080478|Gtf2e1|74197|general transcription factor II E, polypeptide 1 (alpha subunit)	AK154283|Gtf2e1|74197|general transcription factor II E, polypeptide 1 (alpha subunit)	AK031528|Gtf2e1|74197|general transcription factor II E, polypeptide 1 (alpha subunit)	AK011543|Gtf2e1|74197|general transcription factor II E, polypeptide 1 (alpha subunit)	NM_028812|Gtf2e1|74197|general transcription factor II E, polypeptide 1 (alpha subunit)	AK084978|Gtf2e1|74197|general transcription factor II E, polypeptide 1 (alpha subunit)	BC056966|Gtf2e1|74197|general transcription factor II E, polypeptide 1 (alpha subunit)
mm9_v1_chrX_+_71675016_71675084	0.319981	FOXN1.p2	NM_010547|Ikbkg|16151|inhibitor of kappaB kinase gamma	NM_178590|Ikbkg|16151|inhibitor of kappaB kinase gamma	AK154095|Ikbkg|16151|inhibitor of kappaB kinase gamma	AK037020|Ikbkg|16151|inhibitor of kappaB kinase gamma
mm9_v1_chr11_-_103224972_103225005	0.318575	FOXN1.p2	
mm9_v1_chr16_+_4886183_4886360	0.318562	FOXN1.p2	NM_029657|Mgrn1|17237|mahogunin, ring finger 1	BC046830|Mgrn1|17237|mahogunin, ring finger 1	AK150176|Mgrn1|17237|mahogunin, ring finger 1	AK153407|Mgrn1|17237|mahogunin, ring finger 1	AK011747|Mgrn1|17237|mahogunin, ring finger 1	AK088533|Mgrn1|17237|mahogunin, ring finger 1	AK182412|Mgrn1|17237|mahogunin, ring finger 1
mm9_v1_chr10_+_126703317_126703496	0.315541	FOXN1.p2	NM_001190453|Dctn2|69654|dynactin 2	NM_001190454|Dctn2|69654|dynactin 2	NM_027151|Dctn2|69654|dynactin 2	AK081785|Dctn2|69654|dynactin 2	AK054390|Dctn2|69654|dynactin 2	AK164021|Dctn2|69654|dynactin 2	AK144464|Dctn2|69654|dynactin 2	AK144505|Dctn2|69654|dynactin 2	BC004613|Dctn2|69654|dynactin 2
mm9_v1_chr4_-_43013187_43013207	0.315155	FOXN1.p2	Z14044|Vcp|269523|valosin containing protein	AK160889|Vcp|269523|valosin containing protein	AK030751|Vcp|269523|valosin containing protein
mm9_v1_chr8_+_73891457_73891540	0.313838	FOXN1.p2	AK008661|Use1|67023|unconventional SNARE in the ER 1 homolog (S. cerevisiae)	AK003385|Use1|67023|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
mm9_v1_chr11_-_115048469_115048717	0.313749	FOXN1.p2	AK082469|Nat9|66176|N-acetyltransferase 9 (GCN5-related, putative)	AK003948|Nat9|66176|N-acetyltransferase 9 (GCN5-related, putative)	AK154593|Nat9|66176|N-acetyltransferase 9 (GCN5-related, putative)	AK020083|Nat9|66176|N-acetyltransferase 9 (GCN5-related, putative)	BC011315|Nat9|66176|N-acetyltransferase 9 (GCN5-related, putative)	NM_025400|Nat9|66176|N-acetyltransferase 9 (GCN5-related, putative)	AK148048|Nat9|66176|N-acetyltransferase 9 (GCN5-related, putative)
mm9_v1_chr12_+_29436660_29436756	0.313064	FOXN1.p2	AK150308|Tssc1|380752|tumor suppressing subtransferable candidate 1	AK151830|Tssc1|380752|tumor suppressing subtransferable candidate 1	NM_201357|Tssc1|380752|tumor suppressing subtransferable candidate 1	BC031458|Tssc1|380752|tumor suppressing subtransferable candidate 1
mm9_v1_chr9_+_45820921_45821106	0.311875	FOXN1.p2	BC080688|Sik3|70661|SIK family kinase 3	BC063268|Sik3|70661|SIK family kinase 3
mm9_v1_chr7_-_26539732_26539751	0.310559	FOXN1.p2	NM_144922|Hnrnpul1|232989|heterogeneous nuclear ribonucleoprotein U-like 1	BC021506|Hnrnpul1|232989|heterogeneous nuclear ribonucleoprotein U-like 1	AK155604|Hnrnpul1|232989|heterogeneous nuclear ribonucleoprotein U-like 1
mm9_v1_chr14_+_33015323_33015405	0.307661	FOXN1.p2	AF079557|Parg|26430|poly (ADP-ribose) glycohydrolase
mm9_v1_chr12_+_111685371_111685434	0.30447	FOXN1.p2	NM_001135001|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr9_+_58430031_58430196	0.303908	FOXN1.p2	NM_009145|Nptn|20320|neuroplastin	BC039191|Nptn|20320|neuroplastin
mm9_v1_chr1_-_137271539_137271700	0.299883	FOXN1.p2	BC044813|Shisa4|77552|shisa homolog 4 (Xenopus laevis)	NM_175259|Shisa4|77552|shisa homolog 4 (Xenopus laevis)	AK039457|Shisa4|77552|shisa homolog 4 (Xenopus laevis)	AK020369|Shisa4|77552|shisa homolog 4 (Xenopus laevis)
mm9_v1_chr9_+_13632152_13632249	0.299865	FOXN1.p2	AK145026|Fam76b|72826|family with sequence similarity 76, member B	BC043120|Fam76b|72826|family with sequence similarity 76, member B	NM_176836|Fam76b|72826|family with sequence similarity 76, member B	AK052430|Fam76b|72826|family with sequence similarity 76, member B	BC050870|Fam76b|72826|family with sequence similarity 76, member B
mm9_v1_chr11_-_67779142_67779152	0.299242	FOXN1.p2	BC118541|Wdr16|71860|WD repeat domain 16	AK006118|Wdr16|71860|WD repeat domain 16	NM_027963|Wdr16|71860|WD repeat domain 16	AK016839|Wdr16|71860|WD repeat domain 16
mm9_v1_chr11_-_98407281_98407344	0.298729	FOXN1.p2	AK157177|Ikzf3|22780|IKAROS family zinc finger 3	AK036657|Ikzf3|22780|IKAROS family zinc finger 3	NM_011771|Ikzf3|22780|IKAROS family zinc finger 3
mm9_v1_chr10_+_62562903_62562903	0.298335	FOXN1.p2	AF071223|Atoh7|53404|atonal homolog 7 (Drosophila)	NM_016864|Atoh7|53404|atonal homolog 7 (Drosophila)
mm9_v1_chr9_-_108481069_108481081	0.297654	FOXN1.p2	AB041854|Wdr6|83669|WD repeat domain 6
mm9_v1_chr4_-_129419450_129419570	0.297191	FOXN1.p2	BC002051|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	U17046|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK146815|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	U17961|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK150687|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK152084|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	NM_011317|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK044927|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK050520|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK137122|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1
mm9_v1_chr12_+_81891479_81891592	0.297167	FOXN1.p2	AK030233|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK161132|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK143867|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	BC040401|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	NM_178682|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK151939|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK152820|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK164823|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene
mm9_v1_chr2_-_24790645_24790743	0.295458	FOXN1.p2	AK088008|Arrdc1|215705|arrestin domain containing 1	AK170018|Arrdc1|215705|arrestin domain containing 1	BC018501|Arrdc1|215705|arrestin domain containing 1	BC004091|Arrdc1|215705|arrestin domain containing 1
mm9_v1_chr11_+_102622745_102622752	0.29427	FOXN1.p2	AK157926|Adam11|11488|a disintegrin and metallopeptidase domain 11	NM_001110778|Adam11|11488|a disintegrin and metallopeptidase domain 11	NM_009613|Adam11|11488|a disintegrin and metallopeptidase domain 11
mm9_v1_chr3_-_151873242_151873265	0.294197	FOXN1.p2	NM_027287|Dnajb4|67035|DnaJ (Hsp40) homolog, subfamily B, member 4	AK077587|Dnajb4|67035|DnaJ (Hsp40) homolog, subfamily B, member 4
mm9_v1_chr10_-_127103595_127103798	0.293232	FOXN1.p2	AK171180|Nab2|17937|Ngfi-A binding protein 2	BC045139|Nab2|17937|Ngfi-A binding protein 2	AK155501|Nab2|17937|Ngfi-A binding protein 2	AK158688|Nab2|17937|Ngfi-A binding protein 2	U47543|Nab2|17937|Ngfi-A binding protein 2	NM_001122895|Nab2|17937|Ngfi-A binding protein 2	NM_008668|Nab2|17937|Ngfi-A binding protein 2
mm9_v1_chr17_-_27650285_27650347	0.292103	FOXN1.p2	BC072635|Grm4|268934|glutamate receptor, metabotropic 4
mm9_v1_chr5_+_32000312_32000424	0.291718	FOXN1.p2	AK156929|Bre|107976|brain and reproductive organ-expressed protein	AK020047|Bre|107976|brain and reproductive organ-expressed protein	BC061000|Bre|107976|brain and reproductive organ-expressed protein	AK050695|Bre|107976|brain and reproductive organ-expressed protein	AK080991|Bre|107976|brain and reproductive organ-expressed protein	AK166884|Bre|107976|brain and reproductive organ-expressed protein	AF440752|Bre|107976|brain and reproductive organ-expressed protein	AF527952|Bre|107976|brain and reproductive organ-expressed protein	AF527953|Bre|107976|brain and reproductive organ-expressed protein	AF527954|Bre|107976|brain and reproductive organ-expressed protein	AF527955|Bre|107976|brain and reproductive organ-expressed protein	AF538925|Bre|107976|brain and reproductive organ-expressed protein	NM_144541|Bre|107976|brain and reproductive organ-expressed protein	NM_181279|Bre|107976|brain and reproductive organ-expressed protein	NM_181280|Bre|107976|brain and reproductive organ-expressed protein	NM_181281|Bre|107976|brain and reproductive organ-expressed protein	NM_181282|Bre|107976|brain and reproductive organ-expressed protein
mm9_v1_chr16_-_65105465_65105679	0.290854	FOXN1.p2	BC120507|Htr1f|15557|5-hydroxytryptamine (serotonin) receptor 1F	BC137604|Htr1f|15557|5-hydroxytryptamine (serotonin) receptor 1F	NM_008310|Htr1f|15557|5-hydroxytryptamine (serotonin) receptor 1F	Z14224|Htr1f|15557|5-hydroxytryptamine (serotonin) receptor 1F	AK045364|Htr1f|15557|5-hydroxytryptamine (serotonin) receptor 1F
mm9_v1_chr10_-_89195016_89195045	0.28821	FOXN1.p2	BC062137|Actr6|67019|ARP6 actin-related protein 6 homolog (yeast)	AK088571|Actr6|67019|ARP6 actin-related protein 6 homolog (yeast)	AK008409|Actr6|67019|ARP6 actin-related protein 6 homolog (yeast)	NM_025914|Actr6|67019|ARP6 actin-related protein 6 homolog (yeast)
mm9_v1_chr5_-_34278958_34278970	0.287224	FOXN1.p2	AK146185|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	AK019191|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)
mm9_v1_chr15_+_87455659_87455659	0.286323	FOXN1.p2	AY325124|Fam19a5|106014|family with sequence similarity 19, member A5	BC015306|Fam19a5|106014|family with sequence similarity 19, member A5	NM_134096|Fam19a5|106014|family with sequence similarity 19, member A5
mm9_v1_chr11_-_80966253_80966404	0.285983	FOXN1.p2	BC138530|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	BC138529|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	BC038551|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	NM_007384|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	Y14634|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)
mm9_v1_chr9_-_45714409_45714473	0.285784	FOXN1.p2	BC094247|Rnf214|235315|ring finger protein 214	AK033867|Rnf214|235315|ring finger protein 214
mm9_v1_chrX_-_72661900_72661926	0.285015	FOXN1.p2	AK142198|Mtcp1|17763|mature T-cell proliferation 1	AK140533|Mtcp1|17763|mature T-cell proliferation 1
mm9_v1_chr3_-_33041993_33042007	0.284157	FOXN1.p2	AK042235|Pex5l|58869|peroxisomal biogenesis factor 5-like	AK083141|Pex5l|58869|peroxisomal biogenesis factor 5-like	NM_001163516|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr1_+_168184269_168184413	0.283515	FOXN1.p2	NM_001164528|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024494|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024495|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024496|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024497|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024498|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024499|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024500|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024501|Ildr2|100039795|immunoglobulin-like domain containing receptor 2
mm9_v1_chr4_-_133443662_133443718	0.282854	FOXN1.p2	BC049076|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1	BC094470|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1	M28489|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1	AK148208|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1	NM_009097|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1
mm9_v1_chr3_-_33042147_33042183	0.282732	FOXN1.p2	AK044552|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr9_+_110435100_110435117	0.282102	FOXN1.p2	NM_001081340|Setd2|235626|SET domain containing 2
mm9_v1_chr19_-_10379342_10379355	0.280396	FOXN1.p2	AK147384|Dagla|269060|diacylglycerol lipase, alpha
mm9_v1_chr11_-_40506062_40506146	0.280126	FOXN1.p2	BC003457|Mat2b|108645|methionine adenosyltransferase II, beta	NM_134017|Mat2b|108645|methionine adenosyltransferase II, beta	AK038303|Mat2b|108645|methionine adenosyltransferase II, beta	AK153126|Mat2b|108645|methionine adenosyltransferase II, beta	AB070267|Mat2b|108645|methionine adenosyltransferase II, beta
mm9_v1_chr1_-_127808723_127808763	0.278995	FOXN1.p2	BC058599|Lypd1|72585|Ly6/Plaur domain containing 1
mm9_v1_chr9_-_119488133_119488133	0.27869	FOXN1.p2	AK147254|Scn5a|20271|sodium channel, voltage-gated, type V, alpha	AK147517|Scn5a|20271|sodium channel, voltage-gated, type V, alpha	NM_021544|Scn5a|20271|sodium channel, voltage-gated, type V, alpha
mm9_v1_chr15_-_11925724_11925789	0.278071	FOXN1.p2	J03750|Sub1|20024|SUB1 homolog (S. cerevisiae)	BC010967|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK146335|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK154114|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK049260|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK132021|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK151734|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK048371|Sub1|20024|SUB1 homolog (S. cerevisiae)	NM_011294|Sub1|20024|SUB1 homolog (S. cerevisiae)
mm9_v1_chrX_-_12250659_12250764	0.278061	FOXN1.p2	BC038642|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	AK078166|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	NM_175141|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	AK169085|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	BC051146|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	AK146041|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	AK007661|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	BC137660|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene
mm9_v1_chr14_-_64162562_64162594	0.275717	FOXN1.p2	AK152320|Mtmr9|210376|myotubularin related protein 9
mm9_v1_chr12_-_88541151_88541189	0.274494	FOXN1.p2	AK147378|Tmed8|382620|transmembrane emp24 domain containing 8	NM_001033475|Tmed8|382620|transmembrane emp24 domain containing 8
mm9_v1_chr9_-_60535699_60535786	0.271085	FOXN1.p2	BC016574|Lrrc49|102747|leucine rich repeat containing 49	AK041627|Lrrc49|102747|leucine rich repeat containing 49	AK049268|Lrrc49|102747|leucine rich repeat containing 49
mm9_v1_chr12_-_88607158_88607275	0.26912	FOXN1.p2	BC016646|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	AK082261|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	AK049643|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	AK079055|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	AK038165|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	AK046322|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	AK145043|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	NM_001142580|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	NM_001142581|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	AK020129|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator
mm9_v1_chr8_+_86496844_86496952	0.267088	FOXN1.p2	NM_008854|Prkaca|18747|protein kinase, cAMP dependent, catalytic, alpha	BC003238|Prkaca|18747|protein kinase, cAMP dependent, catalytic, alpha	BC054834|Prkaca|18747|protein kinase, cAMP dependent, catalytic, alpha	M12303|Prkaca|18747|protein kinase, cAMP dependent, catalytic, alpha
mm9_v1_chr5_-_109058762_109058763	0.26608	FOXN1.p2	BC065109|Gak|231580|cyclin G associated kinase
mm9_v1_chr19_-_36994088_36994132	0.265167	FOXN1.p2	BC055778|Fgfbp3|72514|fibroblast growth factor binding protein 3	NM_028263|Fgfbp3|72514|fibroblast growth factor binding protein 3	AK167949|Fgfbp3|72514|fibroblast growth factor binding protein 3
mm9_v1_chr5_-_109058760_109058761	0.264949	FOXN1.p2	AK159767|Gak|231580|cyclin G associated kinase
mm9_v1_chr14_+_33015123_33015189	0.263758	FOXN1.p2	AK036656|Parg|26430|poly (ADP-ribose) glycohydrolase	AK163388|Parg|26430|poly (ADP-ribose) glycohydrolase	EF382673|Parg|26430|poly (ADP-ribose) glycohydrolase	BC059827|Parg|26430|poly (ADP-ribose) glycohydrolase	NM_011960|Parg|26430|poly (ADP-ribose) glycohydrolase	BC050892|Parg|26430|poly (ADP-ribose) glycohydrolase	AK080306|Parg|26430|poly (ADP-ribose) glycohydrolase	AK164013|Parg|26430|poly (ADP-ribose) glycohydrolase	BC053037|Parg|26430|poly (ADP-ribose) glycohydrolase
mm9_v1_chr19_-_5609896_5610062	0.261894	FOXN1.p2	AK195015|Kat5|81601|K(lysine) acetyltransferase 5	AK159568|Kat5|81601|K(lysine) acetyltransferase 5	AK160077|Kat5|81601|K(lysine) acetyltransferase 5	BC129967|Kat5|81601|K(lysine) acetyltransferase 5	AF528195|Kat5|81601|K(lysine) acetyltransferase 5	AF528196|Kat5|81601|K(lysine) acetyltransferase 5	BC129968|Kat5|81601|K(lysine) acetyltransferase 5	DQ139980|Kat5|81601|K(lysine) acetyltransferase 5	NM_178637|Kat5|81601|K(lysine) acetyltransferase 5	BC110675|Kat5|81601|K(lysine) acetyltransferase 5	AK143674|Kat5|81601|K(lysine) acetyltransferase 5	AK146352|Kat5|81601|K(lysine) acetyltransferase 5
mm9_v1_chr5_-_109058768_109058782	0.261783	FOXN1.p2	AK133581|Gak|231580|cyclin G associated kinase	AK150112|Gak|231580|cyclin G associated kinase	AK166682|Gak|231580|cyclin G associated kinase
mm9_v1_chr4_-_132478424_132478474	0.261318	FOXN1.p2	BC008163|Fam76a|230789|family with sequence similarity 76, member A	AK154575|Fam76a|230789|family with sequence similarity 76, member A	NM_001163792|Fam76a|230789|family with sequence similarity 76, member A	NM_145553|Fam76a|230789|family with sequence similarity 76, member A	AK038831|Fam76a|230789|family with sequence similarity 76, member A
mm9_v1_chr6_-_97262013_97262028	0.259484	FOXN1.p2	BC058262|Frmd4b|232288|FERM domain containing 4B
mm9_v1_chr5_-_137974398_137974535	0.257448	FOXN1.p2	BC062178|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	AK002604|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	AK151628|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	NM_010312|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	Y11970|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	AK146941|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2
mm9_v1_chr6_+_53989992_53990032	0.257289	FOXN1.p2	AK131641|Chn2|69993|chimerin (chimaerin) 2
mm9_v1_chr15_+_100299545_100299575	0.256773	FOXN1.p2	AK046496|Letmd1|68614|LETM1 domain containing 1	AK080221|Letmd1|68614|LETM1 domain containing 1	AK169341|Letmd1|68614|LETM1 domain containing 1	AK032864|Letmd1|68614|LETM1 domain containing 1	AK154676|Letmd1|68614|LETM1 domain containing 1	AK041312|Letmd1|68614|LETM1 domain containing 1
mm9_v1_chr7_-_26539753_26539832	0.256621	FOXN1.p2	BC078642|Hnrnpul1|232989|heterogeneous nuclear ribonucleoprotein U-like 1	AK143666|Hnrnpul1|232989|heterogeneous nuclear ribonucleoprotein U-like 1
mm9_v1_chr11_+_62364951_62365050	0.256274	FOXN1.p2	AK007273|Ubb|22187|ubiquitin B	AK003190|Ubb|22187|ubiquitin B	AK010413|Ubb|22187|ubiquitin B	AK010625|Ubb|22187|ubiquitin B	AK012443|Ubb|22187|ubiquitin B	AK013027|Ubb|22187|ubiquitin B	AK132747|Ubb|22187|ubiquitin B	AK165313|Ubb|22187|ubiquitin B	NM_011664|Ubb|22187|ubiquitin B	X51703|Ubb|22187|ubiquitin B	AK160683|Ubb|22187|ubiquitin B	AK013873|Ubb|22187|ubiquitin B	BC019850|Ubb|22187|ubiquitin B	BC100341|Ubb|22187|ubiquitin B
mm9_v1_chrX_+_69062091_69062188	0.255851	FOXN1.p2	NM_001081356|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK049488|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK138582|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK011632|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK008848|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK045401|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK164163|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AJ748652|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	BC094639|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK049296|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	BC028317|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
mm9_v1_chr7_-_107269928_107270049	0.255143	FOXN1.p2	AK180448|Pold3|67967|polymerase (DNA-directed), delta 3, accessory subunit	AK189114|Pold3|67967|polymerase (DNA-directed), delta 3, accessory subunit	AK168179|Pold3|67967|polymerase (DNA-directed), delta 3, accessory subunit	AK088385|Pold3|67967|polymerase (DNA-directed), delta 3, accessory subunit	AK010805|Pold3|67967|polymerase (DNA-directed), delta 3, accessory subunit	AK031778|Pold3|67967|polymerase (DNA-directed), delta 3, accessory subunit	NM_133692|Pold3|67967|polymerase (DNA-directed), delta 3, accessory subunit	BC055325|Pold3|67967|polymerase (DNA-directed), delta 3, accessory subunit	AF294329|Pold3|67967|polymerase (DNA-directed), delta 3, accessory subunit
mm9_v1_chr12_+_3235481_3235529	0.255075	FOXN1.p2	AK005891|1700012B15Rik|74173|RIKEN cDNA 1700012B15 gene	AK171768|1700012B15Rik|74173|RIKEN cDNA 1700012B15 gene	BC080728|1700012B15Rik|74173|RIKEN cDNA 1700012B15 gene	BC062897|1700012B15Rik|74173|RIKEN cDNA 1700012B15 gene	BC099424|1700012B15Rik|74173|RIKEN cDNA 1700012B15 gene	BC060685|1700012B15Rik|74173|RIKEN cDNA 1700012B15 gene
mm9_v1_chr6_+_108733041_108733073	0.253237	FOXN1.p2	NM_026011|Arl8b|67166|ADP-ribosylation factor-like 8B	AK030689|Arl8b|67166|ADP-ribosylation factor-like 8B
mm9_v1_chrX_+_96133099_96133119	0.252372	FOXN1.p2	AK030473|Yipf6|77929|Yip1 domain family, member 6	AK053562|Yipf6|77929|Yip1 domain family, member 6	NM_207633|Yipf6|77929|Yip1 domain family, member 6
mm9_v1_chr8_+_108404773_108404850	0.252344	FOXN1.p2	AK152963|Edc4|234699|enhancer of mRNA decapping 4	AK146527|Edc4|234699|enhancer of mRNA decapping 4	BC053081|Edc4|234699|enhancer of mRNA decapping 4	NM_181594|Edc4|234699|enhancer of mRNA decapping 4
mm9_v1_chr6_-_90760116_90760132	0.251586	FOXN1.p2	NM_001134384|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr5_+_123157541_123157662	0.251095	FOXN1.p2	NM_011026|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AK150351|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AK041904|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AK163104|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AK162498|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	BC002099|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AK162820|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	BC005597|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AK153427|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AF089751|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AF089752|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AJ251459|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AJ251460|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AJ251461|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AJ251462|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4
mm9_v1_chr10_-_62188846_62188846	0.25022	FOXN1.p2	BC137978|Stox1|216021|storkhead box 1	NM_001033260|Stox1|216021|storkhead box 1
mm9_v1_chr15_-_79635156_79635195	0.249907	FOXN1.p2	AK147546|Nptxr|73340|neuronal pentraxin receptor
mm9_v1_chr1_+_92499999_92500134	0.249548	FOXN1.p2	NM_133805|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	BC021488|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK142989|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK079522|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	BC024421|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK079111|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK162502|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK090013|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK145899|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK088323|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)
mm9_v1_chr15_-_53734033_53734098	0.248661	FOXN1.p2	AK032588|Samd12|320679|sterile alpha motif domain containing 12	AK080536|Samd12|320679|sterile alpha motif domain containing 12
mm9_v1_chr10_-_87819765_87819823	0.248394	FOXN1.p2	AK004552|Dram1|71712|DNA-damage regulated autophagy modulator 1	NM_027878|Dram1|71712|DNA-damage regulated autophagy modulator 1
mm9_v1_chr19_-_5085487_5085548	0.247701	FOXN1.p2	AK144531|Tmem151a|381199|transmembrane protein 151A	AK155690|Tmem151a|381199|transmembrane protein 151A	AK163651|Tmem151a|381199|transmembrane protein 151A	AK139456|Tmem151a|381199|transmembrane protein 151A
mm9_v1_chr5_+_118695228_118695301	0.245965	FOXN1.p2	NM_001081236|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	AK090380|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	BC104372|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	BC104373|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene
mm9_v1_chr13_+_48356487_48356596	0.245796	FOXN1.p2	AK041164|Id4|15904|inhibitor of DNA binding 4
mm9_v1_chr2_+_148506922_148506934	0.245415	FOXN1.p2	AK018470|Gzf1|74533|GDNF-inducible zinc finger protein 1	AB100266|Gzf1|74533|GDNF-inducible zinc finger protein 1	BC096015|Gzf1|74533|GDNF-inducible zinc finger protein 1
mm9_v1_chr9_-_99469275_99469317	0.245283	FOXN1.p2	BC038866|Armc8|74125|armadillo repeat containing 8	AK004793|Armc8|74125|armadillo repeat containing 8	NM_001166138|Armc8|74125|armadillo repeat containing 8	NM_028768|Armc8|74125|armadillo repeat containing 8
mm9_v1_chr1_+_94807981_94807981	0.243607	FOXN1.p2	BC031789|Rnpepl1|108657|arginyl aminopeptidase (aminopeptidase B)-like 1	NM_181405|Rnpepl1|108657|arginyl aminopeptidase (aminopeptidase B)-like 1
mm9_v1_chr1_-_99558252_99558259	0.243266	FOXN1.p2	AK137265|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed
mm9_v1_chr8_+_19784580_19784661	0.240336	FOXN1.p2	AK088897|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene
mm9_v1_chrX_-_159081452_159081495	0.239438	FOXN1.p2	BC139012|Reps2|194590|RALBP1 associated Eps domain containing protein 2	BC145500|Reps2|194590|RALBP1 associated Eps domain containing protein 2
mm9_v1_chr3_+_105255444_105255490	0.239379	FOXN1.p2	AK033962|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr9_+_55388955_55389013	0.238959	FOXN1.p2	NM_027397|Isl2|104360|insulin related protein 2 (islet 2)	AK013964|Isl2|104360|insulin related protein 2 (islet 2)	BC120880|Isl2|104360|insulin related protein 2 (islet 2)	BC148307|Isl2|104360|insulin related protein 2 (islet 2)
mm9_v1_chr11_+_120582777_120582942	0.237688	FOXN1.p2	AK150203|Rac3|170758|RAS-related C3 botulinum substrate 3	NM_133223|Rac3|170758|RAS-related C3 botulinum substrate 3	AK089930|Rac3|170758|RAS-related C3 botulinum substrate 3	BC117028|Rac3|170758|RAS-related C3 botulinum substrate 3	BC119041|Rac3|170758|RAS-related C3 botulinum substrate 3	AB040819|Rac3|170758|RAS-related C3 botulinum substrate 3	AY974601|Rac3|170758|RAS-related C3 botulinum substrate 3
mm9_v1_chr1_+_173275837_173275844	0.237291	FOXN1.p2	Y17393|Pfdn2|18637|prefoldin 2	BC026839|Pfdn2|18637|prefoldin 2
mm9_v1_chr14_+_14845004_14845173	0.23702	FOXN1.p2	AK046679|Atxn7|246103|ataxin 7	NM_139227|Atxn7|246103|ataxin 7	BC137846|Atxn7|246103|ataxin 7
mm9_v1_chr5_-_107125783_107125868	0.234885	FOXN1.p2	AK053146|Zfp644|52397|zinc finger protein 644	NM_026856|Zfp644|52397|zinc finger protein 644
mm9_v1_chr11_+_35582969_35582996	0.234727	FOXN1.p2	AK039865|Pank3|211347|pantothenate kinase 3	NM_145962|Pank3|211347|pantothenate kinase 3
mm9_v1_chrX_+_162676870_162676901	0.23362	FOXN1.p2	NM_001177961|Gpm6b|14758|glycoprotein m6b	NM_001177962|Gpm6b|14758|glycoprotein m6b	NM_023122|Gpm6b|14758|glycoprotein m6b	AK132778|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr13_+_54605152_54605165	0.231275	FOXN1.p2	NM_176987|4732471D19Rik|319719|RIKEN cDNA 4732471D19 gene
mm9_v1_chr13_+_77847947_77848021	0.231179	FOXN1.p2	NM_001163419|Fam172a|68675|family with sequence similarity 172, member A	NM_001163420|Fam172a|68675|family with sequence similarity 172, member A	NM_138312|Fam172a|68675|family with sequence similarity 172, member A	AK165273|Fam172a|68675|family with sequence similarity 172, member A	AK052419|Fam172a|68675|family with sequence similarity 172, member A	AK166285|Fam172a|68675|family with sequence similarity 172, member A	BC057380|Fam172a|68675|family with sequence similarity 172, member A	AK049727|Fam172a|68675|family with sequence similarity 172, member A	AF064782|Fam172a|68675|family with sequence similarity 172, member A	AK081188|Fam172a|68675|family with sequence similarity 172, member A
mm9_v1_chr5_+_109058788_109058836	0.228666	FOXN1.p2	AK049952|Tmem175|72392|transmembrane protein 175	NM_001163531|Tmem175|72392|transmembrane protein 175	NM_001163532|Tmem175|72392|transmembrane protein 175	NM_028223|Tmem175|72392|transmembrane protein 175
mm9_v1_chr14_-_64162509_64162554	0.22798	FOXN1.p2	BC145946|Mtmr9|210376|myotubularin related protein 9	BC145948|Mtmr9|210376|myotubularin related protein 9
mm9_v1_chr7_-_134852269_134852320	0.227931	FOXN1.p2	BC005673|Bcl7c|12055|B-cell CLL/lymphoma 7C	NM_009746|Bcl7c|12055|B-cell CLL/lymphoma 7C	AK049064|Bcl7c|12055|B-cell CLL/lymphoma 7C
mm9_v1_chr2_-_139892477_139892545	0.22568	FOXN1.p2	AK036512|Tasp1|75812|taspase, threonine aspartase 1	NM_175225|Tasp1|75812|taspase, threonine aspartase 1	AK160983|Tasp1|75812|taspase, threonine aspartase 1	NM_001159640|Tasp1|75812|taspase, threonine aspartase 1	NM_001159641|Tasp1|75812|taspase, threonine aspartase 1	AK146320|Tasp1|75812|taspase, threonine aspartase 1	AK132709|Tasp1|75812|taspase, threonine aspartase 1	BC024597|Tasp1|75812|taspase, threonine aspartase 1	AK015624|Tasp1|75812|taspase, threonine aspartase 1
mm9_v1_chr9_-_107775011_107775029	0.225274	FOXN1.p2	AK220446|Rbm6|19654|RNA binding motif protein 6	AJ006486|Rbm6|19654|RNA binding motif protein 6	BC026130|Rbm6|19654|RNA binding motif protein 6
mm9_v1_chr6_-_7643156_7643286	0.224935	FOXN1.p2	AK167933|Asns|27053|asparagine synthetase	AK167524|Asns|27053|asparagine synthetase	BC005552|Asns|27053|asparagine synthetase	NM_012055|Asns|27053|asparagine synthetase	U38940|Asns|27053|asparagine synthetase	AK160459|Asns|27053|asparagine synthetase	AK076207|Asns|27053|asparagine synthetase
mm9_v1_chr11_-_4494815_4494822	0.224527	FOXN1.p2	NM_028860|Mtmr3|74302|myotubularin related protein 3
mm9_v1_chr18_+_36894692_36894835	0.224032	FOXN1.p2	AK046207|Tmco6|71983|transmembrane and coiled-coil domains 6	BC005637|Tmco6|71983|transmembrane and coiled-coil domains 6	NM_028036|Tmco6|71983|transmembrane and coiled-coil domains 6	AK164554|Tmco6|71983|transmembrane and coiled-coil domains 6	AK010487|Tmco6|71983|transmembrane and coiled-coil domains 6
mm9_v1_chr11_+_17157549_17157664	0.223542	FOXN1.p2	X95591|C1d|57316|C1D nuclear receptor co-repressor	AK028702|C1d|57316|C1D nuclear receptor co-repressor	AK035169|C1d|57316|C1D nuclear receptor co-repressor	NM_020558|C1d|57316|C1D nuclear receptor co-repressor	BC005436|C1d|57316|C1D nuclear receptor co-repressor
mm9_v1_chr11_+_69805051_69805216	0.223301	FOXN1.p2	BC002126|Gabarap|56486|gamma-aminobutyric acid receptor associated protein	BC024621|Gabarap|56486|gamma-aminobutyric acid receptor associated protein	AK002879|Gabarap|56486|gamma-aminobutyric acid receptor associated protein	AF161587|Gabarap|56486|gamma-aminobutyric acid receptor associated protein	BC029329|Gabarap|56486|gamma-aminobutyric acid receptor associated protein	AK011731|Gabarap|56486|gamma-aminobutyric acid receptor associated protein
mm9_v1_chr9_+_45715013_45715102	0.22323	FOXN1.p2	AK165389|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	AK151980|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	AK148416|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	BC007322|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	U48830|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7
mm9_v1_chr6_-_8728481_8728486	0.223068	FOXN1.p2	AK005965|Ica1|15893|islet cell autoantigen 1	NM_010492|Ica1|15893|islet cell autoantigen 1	AK016989|Ica1|15893|islet cell autoantigen 1
mm9_v1_chr10_+_41530379_41530379	0.22304	FOXN1.p2	BC100403|Sesn1|140742|sestrin 1	NM_001162908|Sesn1|140742|sestrin 1
mm9_v1_chr15_+_35301285_35301305	0.222005	FOXN1.p2	AK053274|Vps13b|666173|vacuolar protein sorting 13B (yeast)	NM_177151|Vps13b|666173|vacuolar protein sorting 13B (yeast)	AK049111|Vps13b|666173|vacuolar protein sorting 13B (yeast)
mm9_v1_chrX_+_98449866_98450159	0.220687	FOXN1.p2	AF114260|Foxo4|54601|forkhead box O4	NM_018789|Foxo4|54601|forkhead box O4	AK157830|Foxo4|54601|forkhead box O4	BC099460|Foxo4|54601|forkhead box O4	BC139275|Foxo4|54601|forkhead box O4	BC139304|Foxo4|54601|forkhead box O4	AB032770|Foxo4|54601|forkhead box O4	AB221664|Foxo4|54601|forkhead box O4
mm9_v1_chr10_+_40069255_40069363	0.220611	FOXN1.p2	AK052818|Cdk19|78334|cyclin-dependent kinase 19	AK147340|Cdk19|78334|cyclin-dependent kinase 19	BC062100|Cdk19|78334|cyclin-dependent kinase 19	BC048908|Cdk19|78334|cyclin-dependent kinase 19
mm9_v1_chr4_-_147310804_147310884	0.220077	FOXN1.p2	BC006599|Plod1|18822|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	AF046782|Plod1|18822|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	AK131632|Plod1|18822|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	AK137480|Plod1|18822|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	AK157729|Plod1|18822|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	AK160822|Plod1|18822|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	NM_011122|Plod1|18822|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
mm9_v1_chr5_+_4192366_4192433	0.219698	FOXN1.p2	AK016498|Gm9897|208595|predicted gene 9897	NM_001042670|Gm9897|208595|predicted gene 9897	BC094442|Mterf|545725|mitochondrial transcription termination factor	BC082778|Mterf|545725|mitochondrial transcription termination factor	BC028525|Gm9897|208595|predicted gene 9897	BC141337|Gm9897|208595|predicted gene 9897	AK020320|Gm9897|208595|predicted gene 9897	AY262005|Mterf|545725|mitochondrial transcription termination factor
mm9_v1_chr8_-_89409079_89409204	0.218439	FOXN1.p2	AK134934|N4bp1|80750|NEDD4 binding protein 1	AK172981|N4bp1|80750|NEDD4 binding protein 1	AK147522|N4bp1|80750|NEDD4 binding protein 1	NM_030563|N4bp1|80750|NEDD4 binding protein 1
mm9_v1_chr19_+_45438212_45438344	0.218373	FOXN1.p2	NM_001037758|Btrc|12234|beta-transducin repeat containing protein	NM_009771|Btrc|12234|beta-transducin repeat containing protein	AK220183|Btrc|12234|beta-transducin repeat containing protein	AK145624|Btrc|12234|beta-transducin repeat containing protein	AK052317|Btrc|12234|beta-transducin repeat containing protein	AK083257|Btrc|12234|beta-transducin repeat containing protein	AF081887|Btrc|12234|beta-transducin repeat containing protein	AK032221|Btrc|12234|beta-transducin repeat containing protein	AK145091|Btrc|12234|beta-transducin repeat containing protein	BC052879|Btrc|12234|beta-transducin repeat containing protein	BC003989|Btrc|12234|beta-transducin repeat containing protein	AF099932|Btrc|12234|beta-transducin repeat containing protein	AF110396|Btrc|12234|beta-transducin repeat containing protein	AF112979|Btrc|12234|beta-transducin repeat containing protein	AK180045|Btrc|12234|beta-transducin repeat containing protein	AK188552|Btrc|12234|beta-transducin repeat containing protein	AK189588|Btrc|12234|beta-transducin repeat containing protein
mm9_v1_chr11_-_102091406_102091485	0.218235	FOXN1.p2	BC049926|Hdac5|15184|histone deacetylase 5	AK146483|Hdac5|15184|histone deacetylase 5	BC058554|Hdac5|15184|histone deacetylase 5	AK145972|Hdac5|15184|histone deacetylase 5	AK139202|Hdac5|15184|histone deacetylase 5	AK155335|Hdac5|15184|histone deacetylase 5	NM_001077696|Hdac5|15184|histone deacetylase 5	NM_010412|Hdac5|15184|histone deacetylase 5
mm9_v1_chr10_-_118677059_118677116	0.217317	FOXN1.p2	AK129225|Cand1|71902|cullin associated and neddylation disassociated 1	AK144869|Cand1|71902|cullin associated and neddylation disassociated 1	AK158080|Cand1|71902|cullin associated and neddylation disassociated 1	NM_027994|Cand1|71902|cullin associated and neddylation disassociated 1
mm9_v1_chr10_+_93103936_93104198	0.216692	FOXN1.p2	AF281278|Ntn4|57764|netrin 4	BC119182|Ntn4|57764|netrin 4	BC119184|Ntn4|57764|netrin 4	AF268066|Ntn4|57764|netrin 4
mm9_v1_chr2_-_151566894_151566981	0.215447	FOXN1.p2	BC131928|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1	BC131930|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1
mm9_v1_chr1_-_64167952_64168022	0.214989	FOXN1.p2	BC019604|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	NM_033563|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	BC004700|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	BC040794|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	AF338369|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	AK149362|Klf7|93691|Kruppel-like factor 7 (ubiquitous)
mm9_v1_chr16_-_11134587_11134761	0.213945	FOXN1.p2	AK157288|Txndc11|106200|thioredoxin domain containing 11	BC029643|Txndc11|106200|thioredoxin domain containing 11	NM_029582|Txndc11|106200|thioredoxin domain containing 11	AK156154|Txndc11|106200|thioredoxin domain containing 11	AK170352|Txndc11|106200|thioredoxin domain containing 11	AK013044|Txndc11|106200|thioredoxin domain containing 11	AK155844|Txndc11|106200|thioredoxin domain containing 11	AK159484|Txndc11|106200|thioredoxin domain containing 11	BC020363|Txndc11|106200|thioredoxin domain containing 11	AK139620|Txndc11|106200|thioredoxin domain containing 11	AK157948|Txndc11|106200|thioredoxin domain containing 11	AK156590|Txndc11|106200|thioredoxin domain containing 11	AK029166|Txndc11|106200|thioredoxin domain containing 11
mm9_v1_chr6_-_131243197_131243269	0.212467	FOXN1.p2	BC027505|Magohb|66441|mago-nashi homolog B (Drosophila)	AK007769|Magohb|66441|mago-nashi homolog B (Drosophila)	AK013310|Magohb|66441|mago-nashi homolog B (Drosophila)	AK006303|Magohb|66441|mago-nashi homolog B (Drosophila)	AK008200|Magohb|66441|mago-nashi homolog B (Drosophila)	NM_025564|Magohb|66441|mago-nashi homolog B (Drosophila)
mm9_v1_chr9_+_122026424_122026492	0.212278	FOXN1.p2	BC094658|Snrk|20623|SNF related kinase	BC020189|Snrk|20623|SNF related kinase
mm9_v1_chr4_+_62186402_62186402	0.212025	FOXN1.p2	AK077205|4933430I17Rik|214106|RIKEN cDNA 4933430I17 gene	BC116650|4933430I17Rik|214106|RIKEN cDNA 4933430I17 gene	NM_177607|4933430I17Rik|214106|RIKEN cDNA 4933430I17 gene
mm9_v1_chr3_+_102799658_102799677	0.2118	FOXN1.p2	AK014113|Sike1|66641|suppressor of IKBKE 1	AK033553|Sike1|66641|suppressor of IKBKE 1	NM_025679|Sike1|66641|suppressor of IKBKE 1	AK017452|Sike1|66641|suppressor of IKBKE 1	AK017694|Sike1|66641|suppressor of IKBKE 1	BC004090|Sike1|66641|suppressor of IKBKE 1	AK019264|Sike1|66641|suppressor of IKBKE 1
mm9_v1_chr11_+_120494714_120494741	0.211438	FOXN1.p2	
mm9_v1_chr3_-_116365414_116365594	0.210393	FOXN1.p2	AK135865|Hiat1|15247|hippocampus abundant gene transcript 1	BC118047|Hiat1|15247|hippocampus abundant gene transcript 1	D88315|Hiat1|15247|hippocampus abundant gene transcript 1	AK004779|Hiat1|15247|hippocampus abundant gene transcript 1	AK169626|Hiat1|15247|hippocampus abundant gene transcript 1	AK158838|Hiat1|15247|hippocampus abundant gene transcript 1	NM_008246|Hiat1|15247|hippocampus abundant gene transcript 1
mm9_v1_chr17_-_84587162_84587254	0.210198	FOXN1.p2	BC139416|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2	BC028330|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2
mm9_v1_chr9_-_13631343_13631398	0.209617	FOXN1.p2	AY225093|Cep57|74360|centrosomal protein 57	AK028458|Cep57|74360|centrosomal protein 57	AK028408|Cep57|74360|centrosomal protein 57
mm9_v1_chr19_+_46836085_46836138	0.208988	FOXN1.p2	AK053711|Cnnm2|94219|cyclin M2	AK159616|Cnnm2|94219|cyclin M2	AK044400|Cnnm2|94219|cyclin M2	NM_001102471|Cnnm2|94219|cyclin M2	NM_033569|Cnnm2|94219|cyclin M2	BC012956|Cnnm2|94219|cyclin M2	AK032006|Cnnm2|94219|cyclin M2
mm9_v1_chr17_-_24346171_24346241	0.208037	FOXN1.p2	AF128866|Ntn3|18209|netrin 3	AK141856|Ntn3|18209|netrin 3
mm9_v1_chr6_+_29222487_29222646	0.207372	FOXN1.p2	NM_001190461|2310016C08Rik|69573|RIKEN cDNA 2310016C08 gene	NM_023516|2310016C08Rik|69573|RIKEN cDNA 2310016C08 gene
mm9_v1_chr5_-_144090853_144090920	0.205637	FOXN1.p2	AK156167|Zdhhc4|72881|zinc finger, DHHC domain containing 4	BC019523|Zdhhc4|72881|zinc finger, DHHC domain containing 4	AK013609|Zdhhc4|72881|zinc finger, DHHC domain containing 4	NM_028379|Zdhhc4|72881|zinc finger, DHHC domain containing 4
mm9_v1_chr17_-_87846158_87846274	0.204314	FOXN1.p2	BC021347|Calm2|12314|calmodulin 2	BC051444|Calm2|12314|calmodulin 2	BC100301|Calm2|12314|calmodulin 2	AK013068|Calm2|12314|calmodulin 2	AK012247|Calm2|12314|calmodulin 2	AK168741|Calm2|12314|calmodulin 2	AK005089|Calm2|12314|calmodulin 2	AK012564|Calm2|12314|calmodulin 2	AK161268|Calm2|12314|calmodulin 2	AK161984|Calm2|12314|calmodulin 2	AK152303|Calm2|12314|calmodulin 2	L31642|Calm2|12314|calmodulin 2	AK160636|Calm2|12314|calmodulin 2	NM_007589|Calm2|12314|calmodulin 2
mm9_v1_chr8_+_73063553_73063604	0.204093	FOXN1.p2	NM_007924|Ell|13716|elongation factor RNA polymerase II	AK159027|Ell|13716|elongation factor RNA polymerase II	U80227|Ell|13716|elongation factor RNA polymerase II	BC014816|Ell|13716|elongation factor RNA polymerase II	BC024894|Ell|13716|elongation factor RNA polymerase II
mm9_v1_chr7_-_36000343_36000392	0.203432	FOXN1.p2	AK149337|Lrp3|435965|low density lipoprotein receptor-related protein 3	NM_001024707|Lrp3|435965|low density lipoprotein receptor-related protein 3
mm9_v1_chrX_+_71516128_71516339	0.202236	FOXN1.p2	NM_052835|Rpl10|110954|ribosomal protein 10	AK146217|Rpl10|110954|ribosomal protein 10	AK011022|Rpl10|110954|ribosomal protein 10	AK088777|Rpl10|110954|ribosomal protein 10	AK144831|Rpl10|110954|ribosomal protein 10	AK151416|Rpl10|110954|ribosomal protein 10	AK151655|Rpl10|110954|ribosomal protein 10	AK152123|Rpl10|110954|ribosomal protein 10	AK152854|Rpl10|110954|ribosomal protein 10	AK153345|Rpl10|110954|ribosomal protein 10	AK160618|Rpl10|110954|ribosomal protein 10	AK167966|Rpl10|110954|ribosomal protein 10	AK168854|Rpl10|110954|ribosomal protein 10	BC086917|Rpl10|110954|ribosomal protein 10	M93980|Rpl10|110954|ribosomal protein 10	AK014054|Rpl10|110954|ribosomal protein 10	AK151736|Rpl10|110954|ribosomal protein 10	AK166610|Rpl10|110954|ribosomal protein 10	AK168250|Rpl10|110954|ribosomal protein 10	AK012561|Rpl10|110954|ribosomal protein 10	AK167239|Rpl10|110954|ribosomal protein 10	BC092383|Rpl10|110954|ribosomal protein 10	BC098204|Rpl10|110954|ribosomal protein 10	X75312|Rpl10|110954|ribosomal protein 10	BC048872|Rpl10|110954|ribosomal protein 10	BC099437|Rpl10|110954|ribosomal protein 10	BC024901|Rpl10|110954|ribosomal protein 10	BC082293|Rpl10|110954|ribosomal protein 10	BC083327|Rpl10|110954|ribosomal protein 10	BC006068|Rpl10|110954|ribosomal protein 10
mm9_v1_chr4_+_119212261_119212343	0.202027	FOXN1.p2	AK082840|Foxj3|230700|forkhead box J3	AK171564|Foxj3|230700|forkhead box J3	AK129271|Foxj3|230700|forkhead box J3	BC058231|Foxj3|230700|forkhead box J3	NM_172699|Foxj3|230700|forkhead box J3	AK133640|Foxj3|230700|forkhead box J3	AK163298|Foxj3|230700|forkhead box J3	AK086875|Foxj3|230700|forkhead box J3	AK139508|Foxj3|230700|forkhead box J3
mm9_v1_chr12_+_83271002_83271165	0.202	FOXN1.p2	NM_001167983|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1	BC058681|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1	AK171876|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1
mm9_v1_chr9_+_75862772_75862821	0.201866	FOXN1.p2	BC037381|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	NM_173731|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	AK141622|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	AK164164|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1
mm9_v1_chr2_+_32143868_32143875	0.20166	FOXN1.p2	BC011407|Golga2|99412|golgi autoantigen, golgin subfamily a, 2
mm9_v1_chr1_-_167167019_167167127	0.201369	FOXN1.p2	BC058250|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	BC002098|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	AK049119|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	AK075774|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	AK049784|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	NM_145513|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)
mm9_v1_chr4_-_115817140_115817220	0.200849	FOXN1.p2	BC147058|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	BC147059|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	BC147737|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	BC147750|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	AK013564|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	NM_026547|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene
mm9_v1_chr3_+_144233654_144233696	0.200698	FOXN1.p2	AK159085|Sep15|93684|selenoprotein	BC019792|Sep15|93684|selenoprotein	AK020419|Sep15|93684|selenoprotein	AK159353|Sep15|93684|selenoprotein
mm9_v1_chr5_-_148211881_148212064	0.200476	FOXN1.p2	AK149292|Flt3|14255|FMS-like tyrosine kinase 3	AK045865|Flt3|14255|FMS-like tyrosine kinase 3	X59398|Flt3|14255|FMS-like tyrosine kinase 3	AK163640|Flt3|14255|FMS-like tyrosine kinase 3	NM_010229|Flt3|14255|FMS-like tyrosine kinase 3
mm9_v1_chrX_+_7340029_7340035	0.200233	FOXN1.p2	AK150372|Tcfe3|209446|transcription factor E3	AK153051|Tcfe3|209446|transcription factor E3
mm9_v1_chr7_-_134169938_134169992	0.199765	FOXN1.p2	L04649|Maz|17188|MYC-associated zinc finger protein (purine-binding transcription factor)	NM_010772|Maz|17188|MYC-associated zinc finger protein (purine-binding transcription factor)
mm9_v1_chr18_-_46358466_46358474	0.199643	FOXN1.p2	NM_001170855|Trim36|28105|tripartite motif-containing 36
mm9_v1_chr7_+_135381536_135381632	0.1996	FOXN1.p2	BC032200|Armc5|233912|armadillo repeat containing 5	BC089363|Armc5|233912|armadillo repeat containing 5
mm9_v1_chr2_+_32143769_32143812	0.198874	FOXN1.p2	AK077516|Golga2|99412|golgi autoantigen, golgin subfamily a, 2	NM_001080968|Golga2|99412|golgi autoantigen, golgin subfamily a, 2	NM_133852|Golga2|99412|golgi autoantigen, golgin subfamily a, 2
mm9_v1_chr10_+_78037712_78037795	0.19863	FOXN1.p2	AK133553|Ilvbl|216136|ilvB (bacterial acetolactate synthase)-like	AK146075|Ilvbl|216136|ilvB (bacterial acetolactate synthase)-like	AK169899|Ilvbl|216136|ilvB (bacterial acetolactate synthase)-like	AK143918|Ilvbl|216136|ilvB (bacterial acetolactate synthase)-like	AK087956|Ilvbl|216136|ilvB (bacterial acetolactate synthase)-like
mm9_v1_chr12_-_45311020_45311067	0.198268	FOXN1.p2	AB028857|Dnajb9|27362|DnaJ (Hsp40) homolog, subfamily B, member 9	BC096676|Dnajb9|27362|DnaJ (Hsp40) homolog, subfamily B, member 9	AK005475|Dnajb9|27362|DnaJ (Hsp40) homolog, subfamily B, member 9	NM_013760|Dnajb9|27362|DnaJ (Hsp40) homolog, subfamily B, member 9
mm9_v1_chr14_+_25309968_25309977	0.197865	FOXN1.p2	AK167874|Rps24|20088|ribosomal protein S24
mm9_v1_chr3_+_51288108_51288406	0.197266	FOXN1.p2	AK087967|Rab33b|19338|RAB33B, member of RAS oncogene family	AK144706|Rab33b|19338|RAB33B, member of RAS oncogene family	AK004974|Rab33b|19338|RAB33B, member of RAS oncogene family	AK159674|Rab33b|19338|RAB33B, member of RAS oncogene family	AB232629|Rab33b|19338|RAB33B, member of RAS oncogene family	AK170483|Rab33b|19338|RAB33B, member of RAS oncogene family	AK203331|Rab33b|19338|RAB33B, member of RAS oncogene family
mm9_v1_chr2_+_181599056_181599106	0.196798	FOXN1.p2	NM_025901|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K
mm9_v1_chr17_+_35561811_35561828	0.195246	FOXN1.p2	NM_207648|H2-Q6|110557|histocompatibility 2, Q region locus 6
mm9_v1_chr5_-_118694869_118695124	0.194172	FOXN1.p2	AK046850|Rnft2|269695|ring finger protein, transmembrane 2	NM_172998|Rnft2|269695|ring finger protein, transmembrane 2	BC057302|Rnft2|269695|ring finger protein, transmembrane 2	AK148930|Rnft2|269695|ring finger protein, transmembrane 2	NM_001109902|Rnft2|269695|ring finger protein, transmembrane 2	AK090256|Rnft2|269695|ring finger protein, transmembrane 2
mm9_v1_chr11_+_77796714_77796777	0.194158	FOXN1.p2	BC043080|Phf12|268448|PHD finger protein 12
mm9_v1_chr7_+_29177950_29178059	0.194064	FOXN1.p2	AK017762|Paf1|54624|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)	AK151665|Paf1|54624|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)	AK152836|Paf1|54624|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)	AK148538|Paf1|54624|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)	AK169292|Paf1|54624|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)	AB041615|Paf1|54624|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)	AK152778|Paf1|54624|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)	AK134857|Paf1|54624|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)	BC029843|Paf1|54624|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)	NM_019458|Paf1|54624|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)	BC083337|Paf1|54624|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)	BC010317|Paf1|54624|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
mm9_v1_chr15_+_65618577_65618631	0.192991	FOXN1.p2	AK030074|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK039937|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	NM_133766|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK044475|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK052906|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK044000|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	BC032092|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK051060|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK161250|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AB158474|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	BC007482|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK052176|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK129065|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK032461|Efr3a|76740|EFR3 homolog A (S. cerevisiae)
mm9_v1_chr1_+_179372452_179372537	0.192629	FOXN1.p2	BC050909|Zfp238|30928|zinc finger protein 238
mm9_v1_chr13_-_94269762_94269770	0.191942	FOXN1.p2	AK141957|Jmy|57748|junction-mediating and regulatory protein
mm9_v1_chr3_-_151856716_151856729	0.191231	FOXN1.p2	AK028049|Dnajb4|67035|DnaJ (Hsp40) homolog, subfamily B, member 4	AK008537|Dnajb4|67035|DnaJ (Hsp40) homolog, subfamily B, member 4	AK162194|Dnajb4|67035|DnaJ (Hsp40) homolog, subfamily B, member 4	AK136240|Dnajb4|67035|DnaJ (Hsp40) homolog, subfamily B, member 4
mm9_v1_chr5_+_34064954_34065046	0.191181	FOXN1.p2	NM_001163216|Fgfr3|14184|fibroblast growth factor receptor 3	NM_001163217|Fgfr3|14184|fibroblast growth factor receptor 3	S56291|Fgfr3|14184|fibroblast growth factor receptor 3	AF024638|Fgfr3|14184|fibroblast growth factor receptor 3
mm9_v1_chr7_+_140968543_140968573	0.191103	FOXN1.p2	AY819025|Fank1|66930|fibronectin type 3 and ankyrin repeat domains 1	AK017071|Fank1|66930|fibronectin type 3 and ankyrin repeat domains 1	AK005694|Fank1|66930|fibronectin type 3 and ankyrin repeat domains 1	BC046278|Fank1|66930|fibronectin type 3 and ankyrin repeat domains 1	NM_025850|Fank1|66930|fibronectin type 3 and ankyrin repeat domains 1
mm9_v1_chr7_-_99889932_99889979	0.190687	FOXN1.p2	AK014157|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK051992|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK018467|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK019505|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK084903|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK084084|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK145781|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene
mm9_v1_chr7_-_26539409_26539730	0.190103	FOXN1.p2	AK087545|Hnrnpul1|232989|heterogeneous nuclear ribonucleoprotein U-like 1	AK042090|Hnrnpul1|232989|heterogeneous nuclear ribonucleoprotein U-like 1	NM_178089|Hnrnpul1|232989|heterogeneous nuclear ribonucleoprotein U-like 1
mm9_v1_chr4_-_131817388_131817463	0.190032	FOXN1.p2	BC046983|Gmeb1|56809|glucocorticoid modulatory element binding protein 1	AK134349|Gmeb1|56809|glucocorticoid modulatory element binding protein 1	NM_001122992|Gmeb1|56809|glucocorticoid modulatory element binding protein 1	NM_020273|Gmeb1|56809|glucocorticoid modulatory element binding protein 1
mm9_v1_chr3_+_102799653_102799657	0.189813	FOXN1.p2	AK014247|Sike1|66641|suppressor of IKBKE 1
mm9_v1_chr7_+_16633755_16633793	0.18902	FOXN1.p2	AK008102|2010004M13Rik|76511|RIKEN cDNA 2010004M13 gene
mm9_v1_chr7_+_89319717_89319836	0.188303	FOXN1.p2	NM_017400|Sh3gl3|20408|SH3-domain GRB2-like 3	AK012114|Sh3gl3|20408|SH3-domain GRB2-like 3	BC100453|Sh3gl3|20408|SH3-domain GRB2-like 3
mm9_v1_chr9_+_66198310_66198332	0.187294	FOXN1.p2	AK083823|Herc1|235439|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1
mm9_v1_chr19_+_4192077_4192212	0.186371	FOXN1.p2	AK151582|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK150344|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK152051|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK152585|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK090070|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167538|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK159575|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	BC014828|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	U25809|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167244|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167880|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167981|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	NM_031868|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK007932|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK152667|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK028392|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK153517|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK202833|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform
mm9_v1_chr2_+_83484637_83484674	0.186138	FOXN1.p2	AK005661|Zc3h15|69082|zinc finger CCCH-type containing 15	AK139511|Zc3h15|69082|zinc finger CCCH-type containing 15	AK012012|Zc3h15|69082|zinc finger CCCH-type containing 15	AK152374|Zc3h15|69082|zinc finger CCCH-type containing 15	AK167696|Zc3h15|69082|zinc finger CCCH-type containing 15	AK159596|Zc3h15|69082|zinc finger CCCH-type containing 15
mm9_v1_chr15_+_99869071_99869185	0.185701	FOXN1.p2	NM_001159361|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	AK147562|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm9_v1_chr17_+_87506971_87507037	0.185684	FOXN1.p2	BC053015|Socs5|56468|suppressor of cytokine signaling 5	NM_019654|Socs5|56468|suppressor of cytokine signaling 5	AK135099|Socs5|56468|suppressor of cytokine signaling 5
mm9_v1_chr18_+_77182835_77182910	0.185588	FOXN1.p2	NM_001039202|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	NM_029826|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	AK137285|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	AK002837|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	AK151285|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	AK152162|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	AK152259|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	AK014208|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	BC058177|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2
mm9_v1_chr6_-_81915918_81915957	0.185231	FOXN1.p2	BC020315|Mrpl19|56284|mitochondrial ribosomal protein L19	BC043921|Mrpl19|56284|mitochondrial ribosomal protein L19	BC061064|Mrpl19|56284|mitochondrial ribosomal protein L19	AK030793|Mrpl19|56284|mitochondrial ribosomal protein L19	AK021180|Mrpl19|56284|mitochondrial ribosomal protein L19	AK050637|Mrpl19|56284|mitochondrial ribosomal protein L19	NM_026490|Mrpl19|56284|mitochondrial ribosomal protein L19	AK141554|Mrpl19|56284|mitochondrial ribosomal protein L19
mm9_v1_chr16_-_14317418_14317497	0.184771	FOXN1.p2	AK012206|0610037P05Rik|66086|RIKEN cDNA 0610037P05 gene	BC011300|0610037P05Rik|66086|RIKEN cDNA 0610037P05 gene	NM_025345|0610037P05Rik|66086|RIKEN cDNA 0610037P05 gene	AK153894|0610037P05Rik|66086|RIKEN cDNA 0610037P05 gene	AK002785|0610037P05Rik|66086|RIKEN cDNA 0610037P05 gene	AK146884|0610037P05Rik|66086|RIKEN cDNA 0610037P05 gene
mm9_v1_chr9_+_72833327_72833369	0.182949	FOXN1.p2	NM_001114328|Ccpg1|72278|cell cycle progression 1	NM_028181|Ccpg1|72278|cell cycle progression 1
mm9_v1_chr16_+_13109828_13109828	0.18147	FOXN1.p2	AF189285|Ercc4|50505|excision repair cross-complementing rodent repair deficiency, complementation group 4	NM_015769|Ercc4|50505|excision repair cross-complementing rodent repair deficiency, complementation group 4
mm9_v1_chr5_+_53174293_53174344	0.180141	FOXN1.p2	AK138997|Zcchc4|78796|zinc finger, CCHC domain containing 4	AK049511|Zcchc4|78796|zinc finger, CCHC domain containing 4	NM_030185|Zcchc4|78796|zinc finger, CCHC domain containing 4	AK019621|Zcchc4|78796|zinc finger, CCHC domain containing 4	AK143805|Zcchc4|78796|zinc finger, CCHC domain containing 4
mm9_v1_chr9_-_110019806_110019945	0.179495	FOXN1.p2	BC062885|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK153969|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK184646|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK159601|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK146326|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm9_v1_chr4_+_12067263_12067419	0.178942	FOXN1.p2	NM_028226|Rbm12b|72397|RNA binding motif protein 12B	AK030861|Rbm12b|72397|RNA binding motif protein 12B
mm9_v1_chr11_+_82577835_82577869	0.178897	FOXN1.p2	AK008475|Zfp830|66983|zinc finger protein 830	AK132497|Zfp830|66983|zinc finger protein 830	NM_025884|Zfp830|66983|zinc finger protein 830	AK148058|Zfp830|66983|zinc finger protein 830	AK050043|Zfp830|66983|zinc finger protein 830	AK010353|Zfp830|66983|zinc finger protein 830	AK167656|Zfp830|66983|zinc finger protein 830	BC024340|Zfp830|66983|zinc finger protein 830	AK168417|Zfp830|66983|zinc finger protein 830	AK017640|Zfp830|66983|zinc finger protein 830
mm9_v1_chr8_-_72498210_72498309	0.178264	FOXN1.p2	NM_001113346|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr4_-_147242501_147242654	0.177907	FOXN1.p2	BC017525|Miip|28010|migration and invasion inhibitory protein	AK133976|Miip|28010|migration and invasion inhibitory protein	AK170224|Miip|28010|migration and invasion inhibitory protein	BC024069|Miip|28010|migration and invasion inhibitory protein
mm9_v1_chr14_+_75132097_75132190	0.176742	FOXN1.p2	AK010683|Esd|13885|esterase D/formylglutathione hydrolase	AK007527|Esd|13885|esterase D/formylglutathione hydrolase	AB025408|Esd|13885|esterase D/formylglutathione hydrolase	AK180750|Esd|13885|esterase D/formylglutathione hydrolase	AK079131|Esd|13885|esterase D/formylglutathione hydrolase	NM_016903|Esd|13885|esterase D/formylglutathione hydrolase	AK021209|Esd|13885|esterase D/formylglutathione hydrolase	AK163074|Esd|13885|esterase D/formylglutathione hydrolase	BC046766|Esd|13885|esterase D/formylglutathione hydrolase	BC096644|Esd|13885|esterase D/formylglutathione hydrolase	AK088115|Esd|13885|esterase D/formylglutathione hydrolase
mm9_v1_chr11_+_78075242_78075302	0.176526	FOXN1.p2	AK150829|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	NM_001002004|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC080706|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	AK149719|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC075633|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC019798|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene
mm9_v1_chr1_+_24685711_24685764	0.176375	FOXN1.p2	AK158982|Lmbrd1|68421|LMBR1 domain containing 1
mm9_v1_chrX_+_147955201_147955234	0.175965	FOXN1.p2	AK040969|Phf8|320595|PHD finger protein 8	NM_001113354|Phf8|320595|PHD finger protein 8	NM_177201|Phf8|320595|PHD finger protein 8
mm9_v1_chr8_+_63369202_63369282	0.174274	FOXN1.p2	AK151754|2700029M09Rik|72612|RIKEN cDNA 2700029M09 gene	BC042740|2700029M09Rik|72612|RIKEN cDNA 2700029M09 gene	NM_028299|2700029M09Rik|72612|RIKEN cDNA 2700029M09 gene	AK150453|2700029M09Rik|72612|RIKEN cDNA 2700029M09 gene	AK157260|2700029M09Rik|72612|RIKEN cDNA 2700029M09 gene	AK012304|2700029M09Rik|72612|RIKEN cDNA 2700029M09 gene
mm9_v1_chr15_-_86044710_86044826	0.174208	FOXN1.p2	AK012625|2810001A02Rik|72146|RIKEN cDNA 2810001A02 gene
mm9_v1_chr13_-_92901606_92901650	0.17407	FOXN1.p2	AK158472|Rasgrf2|19418|RAS protein-specific guanine nucleotide-releasing factor 2
mm9_v1_chr13_+_49063548_49063655	0.173823	FOXN1.p2	BC045201|C030044B11Rik|68128|RIKEN cDNA C030044B11 gene	BC024672|C030044B11Rik|68128|RIKEN cDNA C030044B11 gene
mm9_v1_chr4_+_94281210_94281261	0.172892	FOXN1.p2	NM_026319|Ift74|67694|intraflagellar transport 74 homolog (Chlamydomonas)	BC005798|Ift74|67694|intraflagellar transport 74 homolog (Chlamydomonas)	AK014770|Ift74|67694|intraflagellar transport 74 homolog (Chlamydomonas)	AK011690|Ift74|67694|intraflagellar transport 74 homolog (Chlamydomonas)	AK053369|Ift74|67694|intraflagellar transport 74 homolog (Chlamydomonas)	BC023760|Ift74|67694|intraflagellar transport 74 homolog (Chlamydomonas)	BC049156|Ift74|67694|intraflagellar transport 74 homolog (Chlamydomonas)
mm9_v1_chr4_+_147514795_147514839	0.17227	FOXN1.p2	AK165627|Mad2l2|71890|MAD2 mitotic arrest deficient-like 2 (yeast)
mm9_v1_chr7_+_87343496_87343507	0.171184	FOXN1.p2	DQ073331|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm9_v1_chr16_+_37539964_37540021	0.171021	FOXN1.p2	AK016099|Rabl3|67657|RAB, member of RAS oncogene family-like 3	NM_001042499|Rabl3|67657|RAB, member of RAS oncogene family-like 3	AK011280|Rabl3|67657|RAB, member of RAS oncogene family-like 3	AK028195|Rabl3|67657|RAB, member of RAS oncogene family-like 3	AK156982|Rabl3|67657|RAB, member of RAS oncogene family-like 3	AK028269|Rabl3|67657|RAB, member of RAS oncogene family-like 3	BC050194|Rabl3|67657|RAB, member of RAS oncogene family-like 3
mm9_v1_chr2_+_148506844_148506905	0.170861	FOXN1.p2	NM_028986|Gzf1|74533|GDNF-inducible zinc finger protein 1	AK141153|Gzf1|74533|GDNF-inducible zinc finger protein 1	AK052820|Gzf1|74533|GDNF-inducible zinc finger protein 1	AK053262|Gzf1|74533|GDNF-inducible zinc finger protein 1	AK080513|Gzf1|74533|GDNF-inducible zinc finger protein 1
mm9_v1_chr12_+_103707474_103707512	0.170751	FOXN1.p2	AK152533|Golga5|27277|golgi autoantigen, golgin subfamily a, 5	AK153010|Golga5|27277|golgi autoantigen, golgin subfamily a, 5	AK007592|Golga5|27277|golgi autoantigen, golgin subfamily a, 5	AK168765|Golga5|27277|golgi autoantigen, golgin subfamily a, 5
mm9_v1_chr11_-_100599413_100599524	0.170235	FOXN1.p2	AK134691|Rab5c|19345|RAB5C, member RAS oncogene family	BC029678|Rab5c|19345|RAB5C, member RAS oncogene family	NM_024456|Rab5c|19345|RAB5C, member RAS oncogene family	BC023027|Rab5c|19345|RAB5C, member RAS oncogene family	AK172328|Rab5c|19345|RAB5C, member RAS oncogene family	AK159832|Rab5c|19345|RAB5C, member RAS oncogene family	AK167599|Rab5c|19345|RAB5C, member RAS oncogene family	AK089199|Rab5c|19345|RAB5C, member RAS oncogene family	AK170540|Rab5c|19345|RAB5C, member RAS oncogene family
mm9_v1_chr17_-_37088578_37088736	0.169573	FOXN1.p2	BC027737|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	AK077455|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	AK089107|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	AK162607|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	AK170104|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	AK005379|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	NM_029632|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm9_v1_chr7_+_4088622_4088685	0.169127	FOXN1.p2	AK170629|Leng8|232798|leukocyte receptor cluster (LRC) member 8	AK034310|Leng8|232798|leukocyte receptor cluster (LRC) member 8	NM_172736|Leng8|232798|leukocyte receptor cluster (LRC) member 8	AK085304|Leng8|232798|leukocyte receptor cluster (LRC) member 8	AK158293|Leng8|232798|leukocyte receptor cluster (LRC) member 8	BC066768|Leng8|232798|leukocyte receptor cluster (LRC) member 8	BC042658|Leng8|232798|leukocyte receptor cluster (LRC) member 8	BC041775|Leng8|232798|leukocyte receptor cluster (LRC) member 8
mm9_v1_chr2_+_160471695_160471802	0.169084	FOXN1.p2	AK164061|Top1|21969|topoisomerase (DNA) I	AK083930|Top1|21969|topoisomerase (DNA) I	AK166844|Top1|21969|topoisomerase (DNA) I	BC048743|Top1|21969|topoisomerase (DNA) I	BC002095|Top1|21969|topoisomerase (DNA) I	AK160590|Top1|21969|topoisomerase (DNA) I	BC092349|Top1|21969|topoisomerase (DNA) I
mm9_v1_chr2_-_153458515_153458541	0.168785	FOXN1.p2	NM_001195390|Commd7|99311|COMM domain containing 7	NM_133850|Commd7|99311|COMM domain containing 7
mm9_v1_chr4_-_153514316_153514316	0.166922	FOXN1.p2	NM_011642|Trp73|22062|transformation related protein 73	Y19234|Trp73|22062|transformation related protein 73
mm9_v1_chr4_+_12016582_12016640	0.166826	FOXN1.p2	AK080943|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene	BC137620|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene
mm9_v1_chr10_-_38853662_38853700	0.165182	FOXN1.p2	BC094255|1700025K23Rik|66337|RIKEN cDNA 1700025K23 gene	AK006431|1700025K23Rik|66337|RIKEN cDNA 1700025K23 gene	AK006353|1700025K23Rik|66337|RIKEN cDNA 1700025K23 gene	NM_183254|1700025K23Rik|66337|RIKEN cDNA 1700025K23 gene
mm9_v1_chr15_+_100958952_100958993	0.165182	FOXN1.p2	L48015|Acvrl1|11482|activin A receptor, type II-like 1	NM_009612|Acvrl1|11482|activin A receptor, type II-like 1	AK160915|Acvrl1|11482|activin A receptor, type II-like 1
mm9_v1_chr19_-_29038643_29038643	0.163831	FOXN1.p2	AK031997|4430402I18Rik|381218|RIKEN cDNA 4430402I18 gene	NM_198651|4430402I18Rik|381218|RIKEN cDNA 4430402I18 gene
mm9_v1_chr6_-_51419726_51419880	0.163676	FOXN1.p2	BC141253|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	BC145588|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	AF073993|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	AK089012|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr9_+_59598963_59599005	0.163018	FOXN1.p2	NM_173018|Myo9a|270163|myosin IXa	AK048681|Myo9a|270163|myosin IXa
mm9_v1_chr19_+_55390770_55390846	0.16233	FOXN1.p2	AK135463|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AK014541|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AK148281|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AK030538|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AF035209|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	BC089321|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AF035823|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AK028646|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	NM_016862|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	BC012211|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AK035895|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)
mm9_v1_chr12_-_117501430_117501510	0.161893	FOXN1.p2	BC138916|Wdr60|217935|WD repeat domain 60	AK046002|Wdr60|217935|WD repeat domain 60	AK140242|Wdr60|217935|WD repeat domain 60	AK079764|Wdr60|217935|WD repeat domain 60	AK032986|Wdr60|217935|WD repeat domain 60	AK046399|Wdr60|217935|WD repeat domain 60	AK052482|Wdr60|217935|WD repeat domain 60	AK144138|Wdr60|217935|WD repeat domain 60	NM_146039|Wdr60|217935|WD repeat domain 60
mm9_v1_chr1_-_186635140_186635191	0.161361	FOXN1.p2	NM_001081361|Mosc1|66112|MOCO sulphurase C-terminal domain containing 1
mm9_v1_chr5_-_109058675_109058759	0.160887	FOXN1.p2	BC062975|Gak|231580|cyclin G associated kinase	BC065051|Gak|231580|cyclin G associated kinase	BC060622|Gak|231580|cyclin G associated kinase	AK161151|Gak|231580|cyclin G associated kinase	BC065052|Gak|231580|cyclin G associated kinase	NM_153569|Gak|231580|cyclin G associated kinase	AK146695|Gak|231580|cyclin G associated kinase
mm9_v1_chr19_-_5085471_5085483	0.159763	FOXN1.p2	BC072634|Tmem151a|381199|transmembrane protein 151A	NM_001001885|Tmem151a|381199|transmembrane protein 151A
mm9_v1_chr19_-_40686672_40686686	0.159681	FOXN1.p2	BC080805|Tctn3|67590|tectonic family member 3
mm9_v1_chr5_-_130731280_130731426	0.158552	FOXN1.p2	AK005079|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	AK019228|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	AK168847|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	BC003849|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	NM_023248|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	AK014648|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	X99668|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)
mm9_v1_chr2_+_22924561_22924686	0.15841	FOXN1.p2	NM_001102437|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	NM_001102438|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	AK147839|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	BC053518|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	BC035202|Acbd5|74159|acyl-Coenzyme A binding domain containing 5
mm9_v1_chr3_+_82161952_82161996	0.157797	FOXN1.p2	AK138540|Mtap9|213582|microtubule-associated protein 9	AK038737|Mtap9|213582|microtubule-associated protein 9	NM_001081230|Mtap9|213582|microtubule-associated protein 9
mm9_v1_chr4_-_82505534_82505564	0.156937	FOXN1.p2	NM_026647|Zdhhc21|68268|zinc finger, DHHC domain containing 21
mm9_v1_chr2_+_21127350_21127413	0.156881	FOXN1.p2	AK029518|Thnsl1|208967|threonine synthase-like 1 (bacterial)	NM_001001297|Thnsl1|208967|threonine synthase-like 1 (bacterial)	NM_177588|Thnsl1|208967|threonine synthase-like 1 (bacterial)	AK083895|Thnsl1|208967|threonine synthase-like 1 (bacterial)	AK033465|Thnsl1|208967|threonine synthase-like 1 (bacterial)	AK087148|Thnsl1|208967|threonine synthase-like 1 (bacterial)
mm9_v1_chr9_-_106587984_106588005	0.156699	FOXN1.p2	AK009326|Tex264|21767|testis expressed gene 264	NM_011573|Tex264|21767|testis expressed gene 264	X80428|Tex264|21767|testis expressed gene 264
mm9_v1_chr11_-_62270815_62270835	0.156473	FOXN1.p2	AK035813|Ncor1|20185|nuclear receptor co-repressor 1	AK077420|Ncor1|20185|nuclear receptor co-repressor 1	NM_011308|Ncor1|20185|nuclear receptor co-repressor 1
mm9_v1_chr14_+_76245136_76245138	0.155196	FOXN1.p2	AK149695|Tpt1|22070|tumor protein, translationally-controlled 1	AK150500|Tpt1|22070|tumor protein, translationally-controlled 1	AK151266|Tpt1|22070|tumor protein, translationally-controlled 1	AK151375|Tpt1|22070|tumor protein, translationally-controlled 1	AK151894|Tpt1|22070|tumor protein, translationally-controlled 1	AK152690|Tpt1|22070|tumor protein, translationally-controlled 1	AK159516|Tpt1|22070|tumor protein, translationally-controlled 1	AK165736|Tpt1|22070|tumor protein, translationally-controlled 1	AK167413|Tpt1|22070|tumor protein, translationally-controlled 1	AK167936|Tpt1|22070|tumor protein, translationally-controlled 1	AK168151|Tpt1|22070|tumor protein, translationally-controlled 1	AK150300|Tpt1|22070|tumor protein, translationally-controlled 1	AK150858|Tpt1|22070|tumor protein, translationally-controlled 1	AK151059|Tpt1|22070|tumor protein, translationally-controlled 1	AK152808|Tpt1|22070|tumor protein, translationally-controlled 1	AK159565|Tpt1|22070|tumor protein, translationally-controlled 1	X06407|Tpt1|22070|tumor protein, translationally-controlled 1
mm9_v1_chr4_+_117222924_117223239	0.155183	FOXN1.p2	AK144107|Eri3|140546|exoribonuclease 3	BC096545|Eri3|140546|exoribonuclease 3	AK083017|Eri3|140546|exoribonuclease 3	NM_080469|Eri3|140546|exoribonuclease 3	BC116685|Eri3|140546|exoribonuclease 3	BC117540|Eri3|140546|exoribonuclease 3
mm9_v1_chr7_-_91032695_91032850	0.153845	FOXN1.p2	AK162446|Mesdc1|80889|mesoderm development candidate 1	AK084510|Mesdc1|80889|mesoderm development candidate 1	AK089082|Mesdc1|80889|mesoderm development candidate 1	AK036338|Mesdc1|80889|mesoderm development candidate 1	NM_030705|Mesdc1|80889|mesoderm development candidate 1
mm9_v1_chr8_+_13907735_13907819	0.153563	FOXN1.p2	AK008027|Fbxo25|66822|F-box protein 25	AK134722|Fbxo25|66822|F-box protein 25	AK013645|Fbxo25|66822|F-box protein 25	AK018626|Fbxo25|66822|F-box protein 25	NM_025785|Fbxo25|66822|F-box protein 25	BC014749|Fbxo25|66822|F-box protein 25
mm9_v1_chr17_-_36221134_36221342	0.151938	FOXN1.p2	AY533667|H2-Bl|14963|histocompatibility 2, blastocyst	AY533670|H2-Bl|14963|histocompatibility 2, blastocyst	AY533668|H2-Bl|14963|histocompatibility 2, blastocyst	AY533666|H2-Bl|14963|histocompatibility 2, blastocyst	AY989821|H2-Bl|14963|histocompatibility 2, blastocyst	AY989822|H2-Bl|14963|histocompatibility 2, blastocyst	AY989823|H2-Bl|14963|histocompatibility 2, blastocyst	AY989824|H2-Bl|14963|histocompatibility 2, blastocyst	AY989825|H2-Bl|14963|histocompatibility 2, blastocyst	AY989826|H2-Bl|14963|histocompatibility 2, blastocyst	AY989827|H2-Bl|14963|histocompatibility 2, blastocyst	AY989829|H2-Bl|14963|histocompatibility 2, blastocyst	AY989832|H2-Bl|14963|histocompatibility 2, blastocyst	AY989833|H2-Bl|14963|histocompatibility 2, blastocyst	AY989838|H2-Bl|14963|histocompatibility 2, blastocyst	AY989839|H2-Bl|14963|histocompatibility 2, blastocyst	AY989840|H2-Bl|14963|histocompatibility 2, blastocyst	AY989841|H2-Bl|14963|histocompatibility 2, blastocyst	AY989842|H2-Bl|14963|histocompatibility 2, blastocyst	AY989843|H2-Bl|14963|histocompatibility 2, blastocyst	AY989844|H2-Bl|14963|histocompatibility 2, blastocyst	AY989845|H2-Bl|14963|histocompatibility 2, blastocyst	AY989846|H2-Bl|14963|histocompatibility 2, blastocyst	AY989847|H2-Bl|14963|histocompatibility 2, blastocyst	AY989848|H2-Bl|14963|histocompatibility 2, blastocyst	AY989850|H2-Bl|14963|histocompatibility 2, blastocyst	AY989851|H2-Bl|14963|histocompatibility 2, blastocyst	AY989852|H2-Bl|14963|histocompatibility 2, blastocyst	AY989853|H2-Bl|14963|histocompatibility 2, blastocyst	AY989854|H2-Bl|14963|histocompatibility 2, blastocyst	AY989856|H2-Bl|14963|histocompatibility 2, blastocyst	AY989857|H2-Bl|14963|histocompatibility 2, blastocyst	NM_008199|H2-Bl|14963|histocompatibility 2, blastocyst	BC058170|H2-Bl|14963|histocompatibility 2, blastocyst
mm9_v1_chr11_+_119464299_119464363	0.151817	FOXN1.p2	AK087217|Rptor|74370|regulatory associated protein of MTOR, complex 1	NM_028898|Rptor|74370|regulatory associated protein of MTOR, complex 1	AK029341|Rptor|74370|regulatory associated protein of MTOR, complex 1	AK144082|Rptor|74370|regulatory associated protein of MTOR, complex 1	AK172276|Rptor|74370|regulatory associated protein of MTOR, complex 1
mm9_v1_chr2_+_157104738_157104878	0.150407	FOXN1.p2	AK018761|Rpn2|20014|ribophorin II	BC046806|Rpn2|20014|ribophorin II	AK004968|Rpn2|20014|ribophorin II	NM_019642|Rpn2|20014|ribophorin II
mm9_v1_chr7_+_125856066_125856131	0.148279	FOXN1.p2	BC053103|6330503K22Rik|101565|RIKEN cDNA 6330503K22 gene	NM_182995|6330503K22Rik|101565|RIKEN cDNA 6330503K22 gene	AK141641|6330503K22Rik|101565|RIKEN cDNA 6330503K22 gene
mm9_v1_chr2_+_181599126_181599193	0.147463	FOXN1.p2	AK010875|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K	AK021353|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K	AK031110|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K	AK005152|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K	AK088206|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K	AK008637|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K
mm9_v1_chr16_-_90284552_90284747	0.146963	FOXN1.p2	BC053096|Scaf4|224432|SR-related CTD-associated factor 4	AK045266|Scaf4|224432|SR-related CTD-associated factor 4	BC057592|Scaf4|224432|SR-related CTD-associated factor 4	NM_178923|Scaf4|224432|SR-related CTD-associated factor 4	AK048239|Scaf4|224432|SR-related CTD-associated factor 4	AK173120|Scaf4|224432|SR-related CTD-associated factor 4
mm9_v1_chr9_+_69837253_69837421	0.146659	FOXN1.p2	AK169609|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK054288|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	NM_016787|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK159745|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK014659|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK161116|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	BC012670|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AF035207|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2
mm9_v1_chr4_+_132194931_132195032	0.14649	FOXN1.p2	AK164591|Eya3|14050|eyes absent 3 homolog (Drosophila)	NM_210071|Eya3|14050|eyes absent 3 homolog (Drosophila)	NM_211357|Eya3|14050|eyes absent 3 homolog (Drosophila)	AK144653|Eya3|14050|eyes absent 3 homolog (Drosophila)	NM_010166|Eya3|14050|eyes absent 3 homolog (Drosophila)	BC052860|Eya3|14050|eyes absent 3 homolog (Drosophila)	U81604|Eya3|14050|eyes absent 3 homolog (Drosophila)	AK017913|5830409B07Rik|76020|RIKEN cDNA 5830409B07 gene	BC063259|Eya3|14050|eyes absent 3 homolog (Drosophila)
mm9_v1_chr17_+_37079857_37079925	0.14606	FOXN1.p2	BC051578|Rnf39|386454|ring finger protein 39	BC038661|Rnf39|386454|ring finger protein 39
mm9_v1_chr3_+_40512853_40512857	0.14604	FOXN1.p2	AY550241|Slc25a31|73333|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	BC050810|Slc25a31|73333|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	BC139243|Slc25a31|73333|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	BC139245|Slc25a31|73333|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31
mm9_v1_chr3_+_89263039_89263081	0.143887	FOXN1.p2	NM_026784|Pmvk|68603|phosphomevalonate kinase
mm9_v1_chr2_+_29745239_29745414	0.143074	FOXN1.p2	AF000968|Odf2|18286|outer dense fiber of sperm tails 2	NM_001113213|Odf2|18286|outer dense fiber of sperm tails 2	NM_001113214|Odf2|18286|outer dense fiber of sperm tails 2	NM_001177659|Odf2|18286|outer dense fiber of sperm tails 2	NM_001177661|Odf2|18286|outer dense fiber of sperm tails 2	AK148523|Odf2|18286|outer dense fiber of sperm tails 2	AK165588|Odf2|18286|outer dense fiber of sperm tails 2	AK143726|Odf2|18286|outer dense fiber of sperm tails 2	AK168415|Odf2|18286|outer dense fiber of sperm tails 2	AK162550|Odf2|18286|outer dense fiber of sperm tails 2	BC057001|Odf2|18286|outer dense fiber of sperm tails 2
mm9_v1_chr17_-_36305466_36305481	0.143007	FOXN1.p2	NM_001081032|Gm8909|667977|predicted gene 8909	AB359231|Gm8909|667977|predicted gene 8909
mm9_v1_chr2_+_139502919_139502927	0.142923	FOXN1.p2	AK044859|Ism1|319909|isthmin 1 homolog (zebrafish)
mm9_v1_chr18_-_60783889_60783905	0.142522	FOXN1.p2	AK158933|Synpo|104027|synaptopodin	AK171288|Synpo|104027|synaptopodin
mm9_v1_chr18_+_42671147_42671160	0.142357	FOXN1.p2	AK150312|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK013830|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK010571|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr3_+_79395280_79395367	0.141446	FOXN1.p2	AK150520|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	AK151091|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	BC019778|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	NM_026352|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	BC011499|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	AK016221|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	AK013919|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	AK051597|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	AK003402|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)
mm9_v1_chr2_-_25080180_25080221	0.141302	FOXN1.p2	NM_146116|Tubb2c|227613|tubulin, beta 2C
mm9_v1_chr3_+_102799635_102799652	0.140639	FOXN1.p2	AK035590|Sike1|66641|suppressor of IKBKE 1
mm9_v1_chr8_-_85856284_85856386	0.140344	FOXN1.p2	AK041137|Elmod2|244548|ELMO domain containing 2	AK165222|Elmod2|244548|ELMO domain containing 2	AK036746|Elmod2|244548|ELMO domain containing 2	BC079654|Elmod2|244548|ELMO domain containing 2	AK029044|Elmod2|244548|ELMO domain containing 2	AK036607|Elmod2|244548|ELMO domain containing 2	AK084950|Elmod2|244548|ELMO domain containing 2	NM_001170691|Elmod2|244548|ELMO domain containing 2	NM_178736|Elmod2|244548|ELMO domain containing 2
mm9_v1_chr5_-_24348170_24348237	0.138515	FOXN1.p2	AY197373|Rheb|19744|Ras homolog enriched in brain	NM_053075|Rheb|19744|Ras homolog enriched in brain	BC012273|Rheb|19744|Ras homolog enriched in brain	AK151213|Rheb|19744|Ras homolog enriched in brain	AB039919|Rheb|19744|Ras homolog enriched in brain
mm9_v1_chr2_+_29745582_29745619	0.137844	FOXN1.p2	NM_001177662|Odf2|18286|outer dense fiber of sperm tails 2	NM_013615|Odf2|18286|outer dense fiber of sperm tails 2	AF034105|Odf2|18286|outer dense fiber of sperm tails 2
mm9_v1_chr7_-_81158546_81158567	0.137204	FOXN1.p2	X83562|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	BC096546|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	NM_009181|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
mm9_v1_chr4_+_13670425_13670448	0.135752	FOXN1.p2	AK142006|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_001111026|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr1_+_134212642_134212774	0.134325	FOXN1.p2	NM_001195025|Nuak2|74137|NUAK family, SNF1-like kinase, 2	NM_028778|Nuak2|74137|NUAK family, SNF1-like kinase, 2	AK034082|Nuak2|74137|NUAK family, SNF1-like kinase, 2	AK004737|Nuak2|74137|NUAK family, SNF1-like kinase, 2	AK033672|Nuak2|74137|NUAK family, SNF1-like kinase, 2	BC046833|Nuak2|74137|NUAK family, SNF1-like kinase, 2	BC033302|Nuak2|74137|NUAK family, SNF1-like kinase, 2
mm9_v1_chr9_+_106073523_106073570	0.133653	FOXN1.p2	BC031502|Wdr82|77305|WD repeat domain containing 82	EF011615|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr16_+_81200909_81200967	0.133371	FOXN1.p2	NM_001113208|Ncam2|17968|neural cell adhesion molecule 2	NM_010954|Ncam2|17968|neural cell adhesion molecule 2
mm9_v1_chr8_-_124984513_124984632	0.133358	FOXN1.p2	AF133714|Snai3|30927|snail homolog 3 (Drosophila)	AF195655|Snai3|30927|snail homolog 3 (Drosophila)	BC100724|Snai3|30927|snail homolog 3 (Drosophila)	BC100726|Snai3|30927|snail homolog 3 (Drosophila)	BC100727|Snai3|30927|snail homolog 3 (Drosophila)	AK089285|Snai3|30927|snail homolog 3 (Drosophila)	AK042234|Snai3|30927|snail homolog 3 (Drosophila)	NM_013914|Snai3|30927|snail homolog 3 (Drosophila)	AK153633|Snai3|30927|snail homolog 3 (Drosophila)
mm9_v1_chr2_+_18594027_18594125	0.133242	FOXN1.p2	AK145999|Commd3|12238|COMM domain containing 3	AK145955|Commd3|12238|COMM domain containing 3	BC038077|Commd3|12238|COMM domain containing 3	BC048815|Commd3|12238|COMM domain containing 3	AK007318|Commd3|12238|COMM domain containing 3	AK041634|Commd3|12238|COMM domain containing 3	NM_147778|Commd3|12238|COMM domain containing 3
mm9_v1_chr11_-_60988490_60988572	0.132659	FOXN1.p2	AK220368|Usp22|216825|ubiquitin specific peptidase 22	AK040187|Usp22|216825|ubiquitin specific peptidase 22	AK034492|Usp22|216825|ubiquitin specific peptidase 22	AK155071|Usp22|216825|ubiquitin specific peptidase 22	NM_001004143|Usp22|216825|ubiquitin specific peptidase 22
mm9_v1_chr11_-_30854081_30854140	0.132501	FOXN1.p2	AK002471|Erlec1|66753|endoplasmic reticulum lectin 1	AK077120|Erlec1|66753|endoplasmic reticulum lectin 1	AK133874|Erlec1|66753|endoplasmic reticulum lectin 1	NM_025745|Erlec1|66753|endoplasmic reticulum lectin 1	BC018468|Erlec1|66753|endoplasmic reticulum lectin 1
mm9_v1_chr1_+_152240389_152240449	0.131989	FOXN1.p2	AK132381|Tpr|108989|translocated promoter region	AK088078|Tpr|108989|translocated promoter region	AK157716|Tpr|108989|translocated promoter region
mm9_v1_chr10_-_80630518_80630667	0.130866	FOXN1.p2	AK145367|Pias4|59004|protein inhibitor of activated STAT 4	AF109174|Pias4|59004|protein inhibitor of activated STAT 4
mm9_v1_chr4_+_137772474_137772594	0.13065	FOXN1.p2	AK150784|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK166161|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	NM_001122896|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	NM_010470|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK004938|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK028181|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK050234|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK075725|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK043260|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK161041|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	BC020024|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	BC107687|Hp1bp3|15441|heterochromatin protein 1, binding protein 3
mm9_v1_chr4_+_122782391_122782537	0.129764	FOXN1.p2	U39545|Bmp8b|12164|bone morphogenetic protein 8b	AK082895|Bmp8b|12164|bone morphogenetic protein 8b	NM_007559|Bmp8b|12164|bone morphogenetic protein 8b	BC137890|Bmp8b|12164|bone morphogenetic protein 8b
mm9_v1_chr5_+_30062437_30062485	0.129366	FOXN1.p2	NM_001037940|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	NM_001037941|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	NM_001127367|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	NM_011847|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK134387|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6
mm9_v1_chr3_+_82162091_82162153	0.128873	FOXN1.p2	AK135823|Mtap9|213582|microtubule-associated protein 9	BC087935|Mtap9|213582|microtubule-associated protein 9	AK147287|Mtap9|213582|microtubule-associated protein 9	AK147416|Mtap9|213582|microtubule-associated protein 9	BC061216|Mtap9|213582|microtubule-associated protein 9	AK030527|Mtap9|213582|microtubule-associated protein 9
mm9_v1_chr11_-_95007572_95007583	0.128526	FOXN1.p2	AK145123|Dlx4|13394|distal-less homeobox 4
mm9_v1_chr13_+_3537514_3537611	0.126577	FOXN1.p2	L36314|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2
mm9_v1_chr4_-_33037783_33037814	0.126369	FOXN1.p2	AK135024|Ankrd6|140577|ankyrin repeat domain 6	NM_001012451|Ankrd6|140577|ankyrin repeat domain 6
mm9_v1_chr15_+_99532787_99532913	0.124982	FOXN1.p2	BC026783|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr8_+_131209533_131209569	0.123251	FOXN1.p2	NM_010578|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chrX_-_54646073_54646213	0.122976	FOXN1.p2	AK207357|Rbmx|19655|RNA binding motif protein, X chromosome	AJ237846|Rbmx|19655|RNA binding motif protein, X chromosome	AJ237847|Rbmx|19655|RNA binding motif protein, X chromosome	AK165006|Rbmx|19655|RNA binding motif protein, X chromosome	BC003710|Rbmx|19655|RNA binding motif protein, X chromosome	AK083899|Rbmx|19655|RNA binding motif protein, X chromosome	AK135164|Rbmx|19655|RNA binding motif protein, X chromosome	NM_001166623|Rbmx|19655|RNA binding motif protein, X chromosome	NM_011252|Rbmx|19655|RNA binding motif protein, X chromosome
mm9_v1_chr1_-_173211220_173211350	0.122778	FOXN1.p2	AK134341|Ppox|19044|protoporphyrinogen oxidase	AK142632|Ppox|19044|protoporphyrinogen oxidase	BC002047|Ppox|19044|protoporphyrinogen oxidase	U25114|Ppox|19044|protoporphyrinogen oxidase	NM_008911|Ppox|19044|protoporphyrinogen oxidase
mm9_v1_chr14_+_47896669_47896817	0.122719	FOXN1.p2	BC057159|Socs4|67296|suppressor of cytokine signaling 4	AK014115|Socs4|67296|suppressor of cytokine signaling 4	NM_080843|Socs4|67296|suppressor of cytokine signaling 4
mm9_v1_chrX_+_7419623_7419812	0.122229	FOXN1.p2	AK167226|Otud5|54644|OTU domain containing 5	AF229642|Otud5|54644|OTU domain containing 5
mm9_v1_chr10_-_127962914_127963016	0.121806	FOXN1.p2	BC011482|Esyt1|23943|extended synaptotagmin-like protein 1	NM_011843|Esyt1|23943|extended synaptotagmin-like protein 1	AK044656|Esyt1|23943|extended synaptotagmin-like protein 1	AK088421|Esyt1|23943|extended synaptotagmin-like protein 1	AK080094|Esyt1|23943|extended synaptotagmin-like protein 1	AK152482|Esyt1|23943|extended synaptotagmin-like protein 1	AK152554|Esyt1|23943|extended synaptotagmin-like protein 1
mm9_v1_chr8_+_90723069_90723153	0.121193	FOXN1.p2	AK077553|Papd5|214627|PAP associated domain containing 5	NM_001164497|Papd5|214627|PAP associated domain containing 5	NM_001164498|Papd5|214627|PAP associated domain containing 5	NM_001164499|Papd5|214627|PAP associated domain containing 5	BC059053|Papd5|214627|PAP associated domain containing 5	BC144796|Papd5|214627|PAP associated domain containing 5	BC144797|Papd5|214627|PAP associated domain containing 5	BC145737|Papd5|214627|PAP associated domain containing 5
mm9_v1_chr9_+_118415358_118415568	0.121023	FOXN1.p2	AK161568|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	AK172292|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC037641|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	AF051357|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC003268|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC096467|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	NM_018748|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC023102|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC057561|Golga4|54214|golgi autoantigen, golgin subfamily a, 4
mm9_v1_chr16_+_35022507_35022577	0.12037	FOXN1.p2	AF169286|Ptplb|70757|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b	BC131899|Ptplb|70757|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b	BC131901|Ptplb|70757|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b	AK148143|Ptplb|70757|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b	BC027289|Ptplb|70757|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b	AK018144|Ptplb|70757|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b
mm9_v1_chr2_-_26771849_26771889	0.119204	FOXN1.p2	AK002469|Surf1|20930|surfeit gene 1	AK154726|Surf1|20930|surfeit gene 1
mm9_v1_chr11_-_4749311_4749550	0.118864	FOXN1.p2	L28176|Nf2|18016|neurofibromatosis 2	AK045998|Nf2|18016|neurofibromatosis 2	BC005442|Nf2|18016|neurofibromatosis 2	NM_010898|Nf2|18016|neurofibromatosis 2	X74671|Nf2|18016|neurofibromatosis 2
mm9_v1_chr2_+_69699618_69699738	0.117939	FOXN1.p2	NM_001110145|Ssb|20823|Sjogren syndrome antigen B	NM_009278|Ssb|20823|Sjogren syndrome antigen B	AK088650|Ssb|20823|Sjogren syndrome antigen B	AK134864|Ssb|20823|Sjogren syndrome antigen B	AK168828|Ssb|20823|Sjogren syndrome antigen B	AK032940|Ssb|20823|Sjogren syndrome antigen B	AK017822|Ssb|20823|Sjogren syndrome antigen B	AK088370|Ssb|20823|Sjogren syndrome antigen B	AK088677|Ssb|20823|Sjogren syndrome antigen B	L00993|Ssb|20823|Sjogren syndrome antigen B	Y07951|Ssb|20823|Sjogren syndrome antigen B	AK141487|Ssb|20823|Sjogren syndrome antigen B	BC003820|Ssb|20823|Sjogren syndrome antigen B	BC106150|Ssb|20823|Sjogren syndrome antigen B
mm9_v1_chr6_-_29162226_29162288	0.117873	FOXN1.p2	BC053416|Impdh1|23917|inosine 5'-phosphate dehydrogenase 1	NM_011829|Impdh1|23917|inosine 5'-phosphate dehydrogenase 1
mm9_v1_chr2_+_92025639_92025639	0.117457	FOXN1.p2	AK037174|Phf21a|192285|PHD finger protein 21A	NM_001109691|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr18_+_42671163_42671217	0.116945	FOXN1.p2	AK076993|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK168434|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AB023485|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC040284|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC039185|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC016542|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr5_-_104419233_104419272	0.116211	FOXN1.p2	BC038665|Hsd17b11|114664|hydroxysteroid (17-beta) dehydrogenase 11
mm9_v1_chr4_-_45024999_45025283	0.115943	FOXN1.p2	AK160003|Zbtb5|230119|zinc finger and BTB domain containing 5	BC054551|Zbtb5|230119|zinc finger and BTB domain containing 5	AK031172|Zbtb5|230119|zinc finger and BTB domain containing 5	AY635051|Zbtb5|230119|zinc finger and BTB domain containing 5	BC057545|Zbtb5|230119|zinc finger and BTB domain containing 5	NM_001163283|Zbtb5|230119|zinc finger and BTB domain containing 5	NM_001163284|Zbtb5|230119|zinc finger and BTB domain containing 5	NM_173399|Zbtb5|230119|zinc finger and BTB domain containing 5
mm9_v1_chrX_+_7418894_7418995	0.115274	FOXN1.p2	BC016529|Otud5|54644|OTU domain containing 5	NM_138604|Otud5|54644|OTU domain containing 5	AK155131|Otud5|54644|OTU domain containing 5
mm9_v1_chr5_-_139060952_139060970	0.114899	FOXN1.p2	AB024005|Zfp68|24135|zinc finger protein 68	BC018171|Zfp68|24135|zinc finger protein 68	AK013868|Zfp68|24135|zinc finger protein 68	NM_001044747|Zfp68|24135|zinc finger protein 68	NM_001163797|Zfp68|24135|zinc finger protein 68	NM_013844|Zfp68|24135|zinc finger protein 68
mm9_v1_chr3_-_88964022_88964062	0.114898	FOXN1.p2	BC039156|Hcn3|15168|hyperpolarization-activated, cyclic nucleotide-gated K+ 3	BC138319|Hcn3|15168|hyperpolarization-activated, cyclic nucleotide-gated K+ 3	BC138321|Hcn3|15168|hyperpolarization-activated, cyclic nucleotide-gated K+ 3
mm9_v1_chr6_+_125046576_125046586	0.114673	FOXN1.p2	AK020564|Chd4|107932|chromodomain helicase DNA binding protein 4
mm9_v1_chr7_-_38804503_38804582	0.113108	FOXN1.p2	AK160558|C80913|19777|expressed sequence C80913	AK155994|C80913|19777|expressed sequence C80913	AK166566|C80913|19777|expressed sequence C80913	AK170929|C80913|19777|expressed sequence C80913	NM_011274|C80913|19777|expressed sequence C80913
mm9_v1_chr9_+_45714587_45714651	0.11056	FOXN1.p2	AK050638|Rnf214|235315|ring finger protein 214	BC056456|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	NM_008794|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7
mm9_v1_chr8_+_86590718_86590827	0.110247	FOXN1.p2	AK147790|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	AK036208|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	AK044607|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	NM_009055|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	BC057018|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	AK083571|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	X76088|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)
mm9_v1_chr5_-_115223373_115223529	0.109779	FOXN1.p2	AF148693|Git2|26431|G protein-coupled receptor kinase-interactor 2	AK005365|Git2|26431|G protein-coupled receptor kinase-interactor 2	AK017943|Git2|26431|G protein-coupled receptor kinase-interactor 2	BC043062|Git2|26431|G protein-coupled receptor kinase-interactor 2	BC056993|Git2|26431|G protein-coupled receptor kinase-interactor 2	NM_001077360|Git2|26431|G protein-coupled receptor kinase-interactor 2	NM_019834|Git2|26431|G protein-coupled receptor kinase-interactor 2	AK220323|Git2|26431|G protein-coupled receptor kinase-interactor 2	NM_001077359|Git2|26431|G protein-coupled receptor kinase-interactor 2	AK148029|Git2|26431|G protein-coupled receptor kinase-interactor 2
mm9_v1_chr2_+_75670230_75670233	0.108997	FOXN1.p2	AK031049|Agps|228061|alkylglycerone phosphate synthase	NM_172666|Agps|228061|alkylglycerone phosphate synthase
mm9_v1_chr11_-_115885714_115885820	0.108681	FOXN1.p2	BC092300|H3f3b|15081|H3 histone, family 3B	X13605|H3f3b|15081|H3 histone, family 3B	BC021768|H3f3b|15081|H3 histone, family 3B	BC092043|H3f3b|15081|H3 histone, family 3B	BC002052|H3f3b|15081|H3 histone, family 3B	AK169620|H3f3b|15081|H3 histone, family 3B	BC037730|H3f3b|15081|H3 histone, family 3B	AK167828|H3f3b|15081|H3 histone, family 3B	AK153239|H3f3b|15081|H3 histone, family 3B	AK159615|H3f3b|15081|H3 histone, family 3B	AK166605|H3f3b|15081|H3 histone, family 3B	AK168931|H3f3b|15081|H3 histone, family 3B	AK169042|H3f3b|15081|H3 histone, family 3B	AK044933|H3f3b|15081|H3 histone, family 3B	AK151451|H3f3b|15081|H3 histone, family 3B	AK153189|H3f3b|15081|H3 histone, family 3B	AK151274|H3f3b|15081|H3 histone, family 3B	AK151336|H3f3b|15081|H3 histone, family 3B	AK152026|H3f3b|15081|H3 histone, family 3B	AK153294|H3f3b|15081|H3 histone, family 3B	AK153371|H3f3b|15081|H3 histone, family 3B	AK159338|H3f3b|15081|H3 histone, family 3B	AK169226|H3f3b|15081|H3 histone, family 3B	AK146070|H3f3b|15081|H3 histone, family 3B	AK151658|H3f3b|15081|H3 histone, family 3B	AK151661|H3f3b|15081|H3 histone, family 3B	AK151869|H3f3b|15081|H3 histone, family 3B	AK152453|H3f3b|15081|H3 histone, family 3B	AK152455|H3f3b|15081|H3 histone, family 3B	AK152911|H3f3b|15081|H3 histone, family 3B	AK161675|H3f3b|15081|H3 histone, family 3B	AK162426|H3f3b|15081|H3 histone, family 3B	AK168698|H3f3b|15081|H3 histone, family 3B	AK169039|H3f3b|15081|H3 histone, family 3B	AK163244|H3f3b|15081|H3 histone, family 3B	AK002928|H3f3b|15081|H3 histone, family 3B	AK011431|H3f3b|15081|H3 histone, family 3B	AK159807|H3f3b|15081|H3 histone, family 3B	AK159850|H3f3b|15081|H3 histone, family 3B	AK135839|H3f3b|15081|H3 histone, family 3B	AK151222|H3f3b|15081|H3 histone, family 3B	AK152623|H3f3b|15081|H3 histone, family 3B	AK153530|H3f3b|15081|H3 histone, family 3B	NM_008211|H3f3b|15081|H3 histone, family 3B
mm9_v1_chr7_-_134655863_134655912	0.108592	FOXN1.p2	BC049754|1700008J07Rik|629159|RIKEN cDNA 1700008J07 gene	AK131716|1700008J07Rik|629159|RIKEN cDNA 1700008J07 gene	AK005774|1700008J07Rik|629159|RIKEN cDNA 1700008J07 gene
mm9_v1_chr7_-_13639862_13640112	0.107644	FOXN1.p2	BC129904|Mzf1|109889|myeloid zinc finger 1	BC129905|Mzf1|109889|myeloid zinc finger 1	AK145014|Mzf1|109889|myeloid zinc finger 1	AB088478|Mzf1|109889|myeloid zinc finger 1	BC060649|Mzf1|109889|myeloid zinc finger 1	AK030410|Mzf1|109889|myeloid zinc finger 1	NM_145819|Mzf1|109889|myeloid zinc finger 1
mm9_v1_chr4_-_150418667_150418697	0.107521	FOXN1.p2	AK036345|Per3|18628|period homolog 3 (Drosophila)	AF050182|Per3|18628|period homolog 3 (Drosophila)
mm9_v1_chr18_-_47528483_47528523	0.106958	FOXN1.p2	BC059238|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	AK042751|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	NM_018744|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	AK082711|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm9_v1_chr5_-_138041861_138041972	0.104994	FOXN1.p2	AK019892|Mospd3|68929|motile sperm domain containing 3	AK088731|Mospd3|68929|motile sperm domain containing 3	BC003880|Mospd3|68929|motile sperm domain containing 3
mm9_v1_chr11_+_59652991_59653017	0.104402	FOXN1.p2	AK008226|Nt5m|103850|5',3'-nucleotidase, mitochondrial
mm9_v1_chr11_-_8948907_8948993	0.10438	FOXN1.p2	BC109334|Sun3|194974|Sad1 and UNC84 domain containing 3	AK052771|Sun3|194974|Sad1 and UNC84 domain containing 3	NM_177576|Sun3|194974|Sad1 and UNC84 domain containing 3
mm9_v1_chr7_-_134170532_134170710	0.104149	FOXN1.p2	BC004758|Maz|17188|MYC-associated zinc finger protein (purine-binding transcription factor)
mm9_v1_chr2_+_157105002_157105058	0.104052	FOXN1.p2	AK161624|Rpn2|20014|ribophorin II	AK166778|Rpn2|20014|ribophorin II	AK167864|Rpn2|20014|ribophorin II	AK167866|Rpn2|20014|ribophorin II	AK168221|Rpn2|20014|ribophorin II
mm9_v1_chr2_-_25080099_25080153	0.103484	FOXN1.p2	BC005547|Tubb2c|227613|tubulin, beta 2C
mm9_v1_chr9_+_114597854_114597998	0.102819	FOXN1.p2	AK082950|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1	AK159702|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1	BC023347|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1	NM_146229|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1
mm9_v1_chr12_-_27100112_27100136	0.102809	FOXN1.p2	AF360998|Rnf144a|108089|ring finger protein 144A	NM_001081977|Rnf144a|108089|ring finger protein 144A	NM_080563|Rnf144a|108089|ring finger protein 144A
mm9_v1_chr19_-_34549624_34549641	0.102796	FOXN1.p2	AF059213|Ch25h|12642|cholesterol 25-hydroxylase	NM_009890|Ch25h|12642|cholesterol 25-hydroxylase	AK152770|Ch25h|12642|cholesterol 25-hydroxylase	AK160657|Ch25h|12642|cholesterol 25-hydroxylase	AK140360|Ch25h|12642|cholesterol 25-hydroxylase
mm9_v1_chr4_+_125781341_125781369	0.10194	FOXN1.p2	AB102946|Stk40|74178|serine/threonine kinase 40
mm9_v1_chr8_+_37520601_37520649	0.10187	FOXN1.p2	AK032504|6430573F11Rik|319582|RIKEN cDNA 6430573F11 gene	AK038497|6430573F11Rik|319582|RIKEN cDNA 6430573F11 gene	AK089162|6430573F11Rik|319582|RIKEN cDNA 6430573F11 gene
mm9_v1_chr6_+_6906000_6906017	0.101869	FOXN1.p2	AK046436|Acn9|71238|ACN9 homolog (S. cerevisiae)	AK016986|Acn9|71238|ACN9 homolog (S. cerevisiae)	BC061217|Acn9|71238|ACN9 homolog (S. cerevisiae)	BC118928|Acn9|71238|ACN9 homolog (S. cerevisiae)	BC118927|Acn9|71238|ACN9 homolog (S. cerevisiae)	NM_001077713|Acn9|71238|ACN9 homolog (S. cerevisiae)
mm9_v1_chrX_-_160396490_160396625	0.101086	FOXN1.p2	BC083160|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	BC099617|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	BC065693|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	D45205|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	AK030296|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	AK045504|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	NM_009453|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	NM_178794|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2
mm9_v1_chr6_+_108163089_108163111	0.100804	FOXN1.p2	AK047719|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	AK137477|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	NM_010585|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	X15373|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1
mm9_v1_chr13_-_23853025_23853117	0.100597	FOXN1.p2	NM_178192|Hist1h4a|326619|histone cluster 1, H4a	AK016310|Hist1h4a|326619|histone cluster 1, H4a	BC119241|Hist1h4a|326619|histone cluster 1, H4a	BC119243|Hist1h4a|326619|histone cluster 1, H4a
mm9_v1_chr17_-_65962616_65962686	0.0997322	FOXN1.p2	AF115503|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK012357|Vapa|30960|vesicle-associated membrane protein, associated protein A
mm9_v1_chr11_+_93857338_93857584	0.0995947	FOXN1.p2	AK161623|Spag9|70834|sperm associated antigen 9	NM_027569|Spag9|70834|sperm associated antigen 9	AF327451|Spag9|70834|sperm associated antigen 9	AB047782|Spag9|70834|sperm associated antigen 9	FJ042496|Spag9|70834|sperm associated antigen 9	AK030165|Spag9|70834|sperm associated antigen 9
mm9_v1_chr12_+_8320219_8320268	0.0990168	FOXN1.p2	AK040654|Hs1bp3|58240|HCLS1 binding protein 3	NM_021429|Hs1bp3|58240|HCLS1 binding protein 3	AK154696|Hs1bp3|58240|HCLS1 binding protein 3	AK084802|Hs1bp3|58240|HCLS1 binding protein 3	AK170838|Hs1bp3|58240|HCLS1 binding protein 3	BC095977|Hs1bp3|58240|HCLS1 binding protein 3	AJ132192|Hs1bp3|58240|HCLS1 binding protein 3
mm9_v1_chr1_+_43502790_43502813	0.098982	FOXN1.p2	AK014772|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2
mm9_v1_chr7_-_147222126_147222249	0.098624	FOXN1.p2	BC025582|Tubgcp2|74237|tubulin, gamma complex associated protein 2	AK167924|Tubgcp2|74237|tubulin, gamma complex associated protein 2	BC025564|Tubgcp2|74237|tubulin, gamma complex associated protein 2	BC012519|Tubgcp2|74237|tubulin, gamma complex associated protein 2	AK153511|Tubgcp2|74237|tubulin, gamma complex associated protein 2	BC027034|Tubgcp2|74237|tubulin, gamma complex associated protein 2	AK146771|Tubgcp2|74237|tubulin, gamma complex associated protein 2	NM_133755|Tubgcp2|74237|tubulin, gamma complex associated protein 2
mm9_v1_chr10_-_80204963_80204982	0.0983304	FOXN1.p2	BC053066|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit	AK155825|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit
mm9_v1_chr19_+_47253309_47253309	0.0982756	FOXN1.p2	BC099702|Neurl1a|18011|neuralized homolog 1A (Drosophila)	NM_021360|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr1_+_162836541_162836569	0.0979587	FOXN1.p2	NM_001024952|Rc3h1|381305|RING CCCH (C3H) domains 1	AK139648|Rc3h1|381305|RING CCCH (C3H) domains 1
mm9_v1_chr16_-_4213389_4213406	0.0970627	FOXN1.p2	BC072594|Crebbp|12914|CREB binding protein	NM_001025432|Crebbp|12914|CREB binding protein	BC010297|Crebbp|12914|CREB binding protein
mm9_v1_chr16_-_59638990_59639024	0.0968277	FOXN1.p2	AK003778|Arl6|56297|ADP-ribosylation factor-like 6
mm9_v1_chr16_-_87432721_87432850	0.0967862	FOXN1.p2	AK173009|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	AK165062|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	AK036725|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	AK019706|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	BC116272|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	BC116273|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	NM_001081068|Ltn1|78913|listerin E3 ubiquitin protein ligase 1
mm9_v1_chr15_-_100325669_100325697	0.0959999	FOXN1.p2	BC035295|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	NM_153407|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK146924|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK050864|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK166557|Csrnp2|207785|cysteine-serine-rich nuclear protein 2
mm9_v1_chr11_-_106992869_106992950	0.0951139	FOXN1.p2	BC037661|Bptf|207165|bromodomain PHD finger transcription factor	BC046973|Bptf|207165|bromodomain PHD finger transcription factor
mm9_v1_chr2_+_180234680_180234753	0.0941299	FOXN1.p2	AB017027|Ntsr1|18216|neurotensin receptor 1	NM_018766|Ntsr1|18216|neurotensin receptor 1	BC087730|Ntsr1|18216|neurotensin receptor 1
mm9_v1_chr19_-_7416071_7416084	0.0930681	FOXN1.p2	AK220191|Mark2|13728|MAP/microtubule affinity-regulating kinase 2
mm9_v1_chr3_+_145587194_145587422	0.0929522	FOXN1.p2	AK171687|Bcl10|12042|B-cell leukemia/lymphoma 10	AK156890|Bcl10|12042|B-cell leukemia/lymphoma 10	AK076082|Bcl10|12042|B-cell leukemia/lymphoma 10	AK172158|Bcl10|12042|B-cell leukemia/lymphoma 10	BC003703|Bcl10|12042|B-cell leukemia/lymphoma 10	AK169126|Bcl10|12042|B-cell leukemia/lymphoma 10	AK146236|Bcl10|12042|B-cell leukemia/lymphoma 10	AK168084|Bcl10|12042|B-cell leukemia/lymphoma 10	AK150883|Bcl10|12042|B-cell leukemia/lymphoma 10	AK152563|Bcl10|12042|B-cell leukemia/lymphoma 10	AK152847|Bcl10|12042|B-cell leukemia/lymphoma 10	AF057701|Bcl10|12042|B-cell leukemia/lymphoma 10	AF100339|Bcl10|12042|B-cell leukemia/lymphoma 10	AF134396|Bcl10|12042|B-cell leukemia/lymphoma 10	NM_009740|Bcl10|12042|B-cell leukemia/lymphoma 10	BC172007|Bcl10|12042|B-cell leukemia/lymphoma 10	BC172009|Bcl10|12042|B-cell leukemia/lymphoma 10	AJ006289|Bcl10|12042|B-cell leukemia/lymphoma 10	BC024379|Bcl10|12042|B-cell leukemia/lymphoma 10	AK140179|Bcl10|12042|B-cell leukemia/lymphoma 10	AF127387|Bcl10|12042|B-cell leukemia/lymphoma 10
mm9_v1_chr12_-_32635061_32635121	0.0927783	FOXN1.p2	AK028949|Hbp1|73389|high mobility group box transcription factor 1	AK132503|Hbp1|73389|high mobility group box transcription factor 1	AK139211|Hbp1|73389|high mobility group box transcription factor 1	AK142187|Hbp1|73389|high mobility group box transcription factor 1	AK053005|Hbp1|73389|high mobility group box transcription factor 1	AK028674|Hbp1|73389|high mobility group box transcription factor 1	BC026853|Hbp1|73389|high mobility group box transcription factor 1
mm9_v1_chr12_+_111839571_111839706	0.0924903	FOXN1.p2	NM_030238|Dync1h1|13424|dynein cytoplasmic 1 heavy chain 1	AY004877|Dync1h1|13424|dynein cytoplasmic 1 heavy chain 1	AK045747|Dync1h1|13424|dynein cytoplasmic 1 heavy chain 1	AK052908|Dync1h1|13424|dynein cytoplasmic 1 heavy chain 1
mm9_v1_chr1_+_145624384_145624593	0.0920827	FOXN1.p2	NM_001159866|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	NM_019562|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	AK017925|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	AK011117|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	BC006891|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	AF148447|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	AF175903|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	AK007860|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5
mm9_v1_chr9_-_86775488_86775559	0.0918354	FOXN1.p2	AK051176|Snap91|20616|synaptosomal-associated protein 91
mm9_v1_chr8_+_73891120_73891136	0.0905258	FOXN1.p2	AK165639|Use1|67023|unconventional SNARE in the ER 1 homolog (S. cerevisiae)	AF353245|Use1|67023|unconventional SNARE in the ER 1 homolog (S. cerevisiae)	AK008573|Use1|67023|unconventional SNARE in the ER 1 homolog (S. cerevisiae)	AK160726|Use1|67023|unconventional SNARE in the ER 1 homolog (S. cerevisiae)	AK012490|Use1|67023|unconventional SNARE in the ER 1 homolog (S. cerevisiae)	AK003257|Use1|67023|unconventional SNARE in the ER 1 homolog (S. cerevisiae)	BC038519|Use1|67023|unconventional SNARE in the ER 1 homolog (S. cerevisiae)	AY842453|Use1|67023|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
mm9_v1_chr2_-_44782719_44782794	0.0904654	FOXN1.p2	AK028468|Gtdc1|227835|glycosyltransferase-like domain containing 1	AK163943|Gtdc1|227835|glycosyltransferase-like domain containing 1
mm9_v1_chr7_-_34981664_34981695	0.0901863	FOXN1.p2	BC115797|Pdcd2l|68079|programmed cell death 2-like	AK077948|Pdcd2l|68079|programmed cell death 2-like	NM_026549|Pdcd2l|68079|programmed cell death 2-like	AK151495|Pdcd2l|68079|programmed cell death 2-like	AK003339|Pdcd2l|68079|programmed cell death 2-like	AK154811|Pdcd2l|68079|programmed cell death 2-like
mm9_v1_chr2_-_164860272_164860295	0.0900643	FOXN1.p2	BC017152|Ncoa5|228869|nuclear receptor coactivator 5	NM_144892|Ncoa5|228869|nuclear receptor coactivator 5
mm9_v1_chr16_+_10192998_10193041	0.0900357	FOXN1.p2	AK016180|Atf7ip2|75329|activating transcription factor 7 interacting protein 2	NM_029253|Atf7ip2|75329|activating transcription factor 7 interacting protein 2	NM_153123|Atf7ip2|75329|activating transcription factor 7 interacting protein 2	AY903215|Atf7ip2|75329|activating transcription factor 7 interacting protein 2	AK049401|Atf7ip2|75329|activating transcription factor 7 interacting protein 2	AK077229|Atf7ip2|75329|activating transcription factor 7 interacting protein 2	AK145634|Atf7ip2|75329|activating transcription factor 7 interacting protein 2	AK139862|Atf7ip2|75329|activating transcription factor 7 interacting protein 2
mm9_v1_chr4_-_82505410_82505478	0.089291	FOXN1.p2	BC043110|Zdhhc21|68268|zinc finger, DHHC domain containing 21	AK020293|Zdhhc21|68268|zinc finger, DHHC domain containing 21	AK148344|Zdhhc21|68268|zinc finger, DHHC domain containing 21	AK144108|Zdhhc21|68268|zinc finger, DHHC domain containing 21
mm9_v1_chr3_+_135102720_135102736	0.0877357	FOXN1.p2	BC023266|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
mm9_v1_chr8_-_36028698_36028768	0.0870005	FOXN1.p2	BC057370|Tnks|21951|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	AK080913|Tnks|21951|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	NM_175091|Tnks|21951|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm9_v1_chr10_-_10277663_10277713	0.086528	FOXN1.p2	AK078874|Rab32|67844|RAB32, member RAS oncogene family
mm9_v1_chr5_-_124134289_124134379	0.0864556	FOXN1.p2	BC007191|Clip1|56430|CAP-GLY domain containing linker protein 1	NM_019765|Clip1|56430|CAP-GLY domain containing linker protein 1	AK220172|Clip1|56430|CAP-GLY domain containing linker protein 1
mm9_v1_chr1_+_55144949_55145013	0.0863872	FOXN1.p2	NM_008303|Hspe1|15528|heat shock protein 1 (chaperonin 10)
mm9_v1_chr12_+_110132481_110132526	0.0863499	FOXN1.p2	NM_177602|Wdr25|212198|WD repeat domain 25	AK147993|Wdr25|212198|WD repeat domain 25
mm9_v1_chr1_-_192886758_192886821	0.0838325	FOXN1.p2	AK156071|Tatdn3|68972|TatD DNase domain containing 3	AK005193|Tatdn3|68972|TatD DNase domain containing 3	BC061248|Tatdn3|68972|TatD DNase domain containing 3	NM_001163421|Tatdn3|68972|TatD DNase domain containing 3	NM_001163422|Tatdn3|68972|TatD DNase domain containing 3	NM_026895|Tatdn3|68972|TatD DNase domain containing 3
mm9_v1_chr5_-_115750913_115750938	0.0837378	FOXN1.p2	BC008106|Dynll1|56455|dynein light chain LC8-type 1	BC034258|Dynll1|56455|dynein light chain LC8-type 1	AF020185|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr2_-_180511453_180511604	0.0834087	FOXN1.p2	AF454760|Bhlhe23|140489|basic helix-loop-helix family, member e23	BC119210|Bhlhe23|140489|basic helix-loop-helix family, member e23	BC119208|Bhlhe23|140489|basic helix-loop-helix family, member e23	AK044215|Bhlhe23|140489|basic helix-loop-helix family, member e23	AK051155|Bhlhe23|140489|basic helix-loop-helix family, member e23	NM_080641|Bhlhe23|140489|basic helix-loop-helix family, member e23
mm9_v1_chr2_+_144353453_144353461	0.0826095	FOXN1.p2	AK076538|Polr3f|70408|polymerase (RNA) III (DNA directed) polypeptide F
mm9_v1_chr10_+_85061155_85061265	0.0824537	FOXN1.p2	NM_001017525|Btbd11|74007|BTB (POZ) domain containing 11	AK044022|Btbd11|74007|BTB (POZ) domain containing 11
mm9_v1_chr7_+_146038021_146038054	0.0813595	FOXN1.p2	AK129386|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform	AK011198|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform
mm9_v1_chr17_+_35068184_35068197	0.0809987	FOXN1.p2	NM_010893|Neu1|18010|neuraminidase 1
mm9_v1_chr10_+_127080251_127080261	0.0804427	FOXN1.p2	BC127054|Stat6|20852|signal transducer and activator of transcription 6
mm9_v1_chr9_-_99776467_99776588	0.0798622	FOXN1.p2	BC069948|Sox14|20669|SRY-box containing gene 14	AK138208|Sox14|20669|SRY-box containing gene 14	BC055767|Sox14|20669|SRY-box containing gene 14	BC083360|Sox14|20669|SRY-box containing gene 14	BC100555|Sox14|20669|SRY-box containing gene 14	NM_011440|Sox14|20669|SRY-box containing gene 14
mm9_v1_chr4_-_141094387_141094511	0.0797785	FOXN1.p2	AK137647|Spen|56381|SPEN homolog, transcriptional regulator (Drosophila)	NM_019763|Spen|56381|SPEN homolog, transcriptional regulator (Drosophila)
mm9_v1_chr4_-_155366696_155366786	0.0797555	FOXN1.p2	AK033608|B3galt6|117592|UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	AK090344|B3galt6|117592|UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	AY050569|B3galt6|117592|UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	BC082998|B3galt6|117592|UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	BC057933|B3galt6|117592|UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	AK078083|B3galt6|117592|UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	NM_080445|B3galt6|117592|UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6
mm9_v1_chr17_-_65962822_65962911	0.079026	FOXN1.p2	AF157497|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK003576|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK159582|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK168824|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK088132|Vapa|30960|vesicle-associated membrane protein, associated protein A	BC003866|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK167381|Vapa|30960|vesicle-associated membrane protein, associated protein A	NM_013933|Vapa|30960|vesicle-associated membrane protein, associated protein A
mm9_v1_chr7_+_107520742_107520781	0.0782997	FOXN1.p2	NM_001017985|C2cd3|277939|C2 calcium-dependent domain containing 3	AK171263|C2cd3|277939|C2 calcium-dependent domain containing 3
mm9_v1_chr6_+_66986592_66986609	0.0781832	FOXN1.p2	AK029473|E230016M11Rik|320172|RIKEN cDNA E230016M11 gene
mm9_v1_chr15_+_58720783_58720964	0.0774793	FOXN1.p2	AK029069|Rnf139|75841|ring finger protein 139	NM_175226|Rnf139|75841|ring finger protein 139	AK028400|Rnf139|75841|ring finger protein 139	BC052901|Rnf139|75841|ring finger protein 139	AK033506|Rnf139|75841|ring finger protein 139	AK171807|Tatdn1|69694|TatD DNase domain containing 1
mm9_v1_chr17_-_66234198_66234307	0.0774213	FOXN1.p2	BC075732|Ralbp1|19765|ralA binding protein 1	NM_001198949|Ralbp1|19765|ralA binding protein 1
mm9_v1_chr19_+_3768021_3768138	0.0772077	FOXN1.p2	AY555192|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	AK082660|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	AK054093|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)
mm9_v1_chr7_+_106416854_106416924	0.0770044	FOXN1.p2	NM_001043355|Mtap6|17760|microtubule-associated protein 6	AK154455|Mtap6|17760|microtubule-associated protein 6	Y16032|Mtap6|17760|microtubule-associated protein 6
mm9_v1_chr1_+_152240466_152240735	0.0764151	FOXN1.p2	BC108349|Tpr|108989|translocated promoter region	BC021320|Tpr|108989|translocated promoter region	BC060955|Tpr|108989|translocated promoter region	AK157974|Tpr|108989|translocated promoter region
mm9_v1_chr3_+_41546539_41546585	0.0759955	FOXN1.p2	AK138405|D3Ertd751e|73852|DNA segment, Chr 3, ERATO Doi 751, expressed	NM_001099785|D3Ertd751e|73852|DNA segment, Chr 3, ERATO Doi 751, expressed	NM_027271|D3Ertd751e|73852|DNA segment, Chr 3, ERATO Doi 751, expressed	NM_028667|D3Ertd751e|73852|DNA segment, Chr 3, ERATO Doi 751, expressed	AK085404|D3Ertd751e|73852|DNA segment, Chr 3, ERATO Doi 751, expressed	AK012700|D3Ertd751e|73852|DNA segment, Chr 3, ERATO Doi 751, expressed	AK039725|D3Ertd751e|73852|DNA segment, Chr 3, ERATO Doi 751, expressed	AK045813|D3Ertd751e|73852|DNA segment, Chr 3, ERATO Doi 751, expressed	AK144064|D3Ertd751e|73852|DNA segment, Chr 3, ERATO Doi 751, expressed	AK044548|D3Ertd751e|73852|DNA segment, Chr 3, ERATO Doi 751, expressed	BC062244|D3Ertd751e|73852|DNA segment, Chr 3, ERATO Doi 751, expressed
mm9_v1_chr1_-_186635045_186635085	0.0755012	FOXN1.p2	AK011722|Mosc1|66112|MOCO sulphurase C-terminal domain containing 1	AK004989|Mosc1|66112|MOCO sulphurase C-terminal domain containing 1
mm9_v1_chr11_-_94382743_94382835	0.0747535	FOXN1.p2	AK029929|Mycbpap|104601|MYCBP associated protein	NM_170671|Mycbpap|104601|MYCBP associated protein
mm9_v1_chr6_+_83745021_83745052	0.0735852	FOXN1.p2	AK007240|Nagk|56174|N-acetylglucosamine kinase	AK084646|Nagk|56174|N-acetylglucosamine kinase	AJ242909|Nagk|56174|N-acetylglucosamine kinase	NM_019542|Nagk|56174|N-acetylglucosamine kinase	AK089238|Nagk|56174|N-acetylglucosamine kinase
mm9_v1_chr8_+_107694536_107694875	0.0735328	FOXN1.p2	AK089094|Cbfb|12400|core binding factor beta	NM_001161456|Cbfb|12400|core binding factor beta	NM_001161457|Cbfb|12400|core binding factor beta	NM_001161458|Cbfb|12400|core binding factor beta	NM_022309|Cbfb|12400|core binding factor beta	D14570|Cbfb|12400|core binding factor beta	D14571|Cbfb|12400|core binding factor beta	D14572|Cbfb|12400|core binding factor beta	BC026749|Cbfb|12400|core binding factor beta	BC040752|Cbfb|12400|core binding factor beta	BC006763|Cbfb|12400|core binding factor beta	L03305|Cbfb|12400|core binding factor beta	L03306|Cbfb|12400|core binding factor beta
mm9_v1_chr6_-_39067918_39068240	0.0718	FOXN1.p2	AK162200|Parp12|243771|poly (ADP-ribose) polymerase family, member 12	BC120733|Parp12|243771|poly (ADP-ribose) polymerase family, member 12	BC137645|Parp12|243771|poly (ADP-ribose) polymerase family, member 12	AK156623|Parp12|243771|poly (ADP-ribose) polymerase family, member 12
mm9_v1_chr1_-_173211042_173211071	0.0715283	FOXN1.p2	D45185|Ppox|19044|protoporphyrinogen oxidase
mm9_v1_chr2_-_164860303_164860336	0.0714358	FOXN1.p2	AK173226|Ncoa5|228869|nuclear receptor coactivator 5
mm9_v1_chr15_-_44259348_44259361	0.0706258	FOXN1.p2	
mm9_v1_chr4_+_12016499_12016564	0.0706068	FOXN1.p2	NM_198957|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene	AK169895|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene	BC080741|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene
mm9_v1_chr9_-_86465373_86465470	0.0701295	FOXN1.p2	BC138700|Pgm3|109785|phosphoglucomutase 3	AK051706|Pgm3|109785|phosphoglucomutase 3	AK032776|Pgm3|109785|phosphoglucomutase 3	AK049337|Pgm3|109785|phosphoglucomutase 3	AK169141|Pgm3|109785|phosphoglucomutase 3	AK169082|Pgm3|109785|phosphoglucomutase 3	AK169787|Pgm3|109785|phosphoglucomutase 3	AK165513|Pgm3|109785|phosphoglucomutase 3	AK013402|Pgm3|109785|phosphoglucomutase 3	AK036561|Pgm3|109785|phosphoglucomutase 3	AK049758|Pgm3|109785|phosphoglucomutase 3	AK028066|Pgm3|109785|phosphoglucomutase 3	AK160913|Pgm3|109785|phosphoglucomutase 3	AK043547|Pgm3|109785|phosphoglucomutase 3	NM_001163746|Pgm3|109785|phosphoglucomutase 3	NM_028352|Pgm3|109785|phosphoglucomutase 3
mm9_v1_chr5_-_30890848_30890993	0.069316	FOXN1.p2	AK035982|LOC100502829|100502829|hypothetical LOC100502829	AK138331|LOC100502829|100502829|hypothetical LOC100502829
mm9_v1_chr3_+_89263114_89263157	0.068634	FOXN1.p2	AK150483|Pmvk|68603|phosphomevalonate kinase	AK168358|Pmvk|68603|phosphomevalonate kinase
mm9_v1_chr12_-_11157178_11157178	0.0685748	FOXN1.p2	AK046054|Kcns3|238076|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	NM_173417|Kcns3|238076|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3
mm9_v1_chrX_+_139115908_139116076	0.0683837	FOXN1.p2	AK166488|Tmem164|209497|transmembrane protein 164	BC056470|Tmem164|209497|transmembrane protein 164	NM_177592|Tmem164|209497|transmembrane protein 164
mm9_v1_chr12_+_107022903_107023027	0.0680287	FOXN1.p2	NM_011112|Papola|18789|poly (A) polymerase alpha	AK028940|Papola|18789|poly (A) polymerase alpha	AK090096|Papola|18789|poly (A) polymerase alpha	AK132704|Papola|18789|poly (A) polymerase alpha	AK134552|Papola|18789|poly (A) polymerase alpha	BC060128|Papola|18789|poly (A) polymerase alpha	U58134|Papola|18789|poly (A) polymerase alpha	U52197|Papola|18789|poly (A) polymerase alpha
mm9_v1_chr8_+_73891110_73891115	0.0670479	FOXN1.p2	BC025086|Use1|67023|unconventional SNARE in the ER 1 homolog (S. cerevisiae)	NM_025917|Use1|67023|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
mm9_v1_chrX_+_7419025_7419257	0.0668533	FOXN1.p2	AK010750|Otud5|54644|OTU domain containing 5	AK149777|Otud5|54644|OTU domain containing 5	AK171874|Otud5|54644|OTU domain containing 5	BC051111|Otud5|54644|OTU domain containing 5	AK169921|Otud5|54644|OTU domain containing 5
mm9_v1_chr14_-_67691221_67691310	0.0667329	FOXN1.p2	BC080692|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK161704|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK167530|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK220192|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK161507|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	NM_028032|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK010380|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	BC065100|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK090027|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK164497|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK167189|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform
mm9_v1_chr8_+_23171187_23171223	0.0659981	FOXN1.p2	NM_183142|Alg11|207958|asparagine-linked glycosylation 11 homolog (yeast, alpha-1,2-mannosyltransferase)	AK157746|Alg11|207958|asparagine-linked glycosylation 11 homolog (yeast, alpha-1,2-mannosyltransferase)	AK046475|Alg11|207958|asparagine-linked glycosylation 11 homolog (yeast, alpha-1,2-mannosyltransferase)	BC061469|Alg11|207958|asparagine-linked glycosylation 11 homolog (yeast, alpha-1,2-mannosyltransferase)	AK134312|Alg11|207958|asparagine-linked glycosylation 11 homolog (yeast, alpha-1,2-mannosyltransferase)
mm9_v1_chr17_+_7183208_7183431	0.0657931	FOXN1.p2	NM_026611|Rnaset2b|68195|ribonuclease T2B	AK015947|Rnaset2a|100037283|ribonuclease T2A	AK018722|Rnaset2a|100037283|ribonuclease T2A	AK084454|Rnaset2b|68195|ribonuclease T2B	AK029149|Rnaset2b|68195|ribonuclease T2B	AK019234|Rnaset2a|100037283|ribonuclease T2A	BC031496|Rnaset2a|100037283|ribonuclease T2A	BC100330|Rnaset2b|68195|ribonuclease T2B
mm9_v1_chr5_-_89104575_89104676	0.0653775	FOXN1.p2	AK168385|Grsf1|231413|G-rich RNA sequence binding factor 1	AK168459|Grsf1|231413|G-rich RNA sequence binding factor 1	NM_001098476|Grsf1|231413|G-rich RNA sequence binding factor 1
mm9_v1_chr7_+_146038277_146038301	0.0649319	FOXN1.p2	AK005033|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform
mm9_v1_chr17_-_24346280_24346475	0.0646567	FOXN1.p2	BC094362|Ntn3|18209|netrin 3	NM_010947|Ntn3|18209|netrin 3	AK083904|Ntn3|18209|netrin 3	BC053038|Ntn3|18209|netrin 3	AK031199|Ntn3|18209|netrin 3
mm9_v1_chr10_-_114752600_114752678	0.064529	FOXN1.p2	AK172891|Rab21|216344|RAB21, member RAS oncogene family	BC055042|Rab21|216344|RAB21, member RAS oncogene family	NM_024454|Rab21|216344|RAB21, member RAS oncogene family	BC040104|Rab21|216344|RAB21, member RAS oncogene family
mm9_v1_chr1_+_75165201_75165358	0.0637103	FOXN1.p2	NM_001159905|Zfand2b|68818|zinc finger, AN1 type domain 2B	NM_001159906|Zfand2b|68818|zinc finger, AN1 type domain 2B	BC011495|Zfand2b|68818|zinc finger, AN1 type domain 2B	AK151430|Zfand2b|68818|zinc finger, AN1 type domain 2B	NM_026846|Zfand2b|68818|zinc finger, AN1 type domain 2B	AK004332|Zfand2b|68818|zinc finger, AN1 type domain 2B
mm9_v1_chr17_-_8340473_8340696	0.0625507	FOXN1.p2	BC100330|Rnaset2b|68195|ribonuclease T2B	BC031496|Rnaset2a|100037283|ribonuclease T2A	AK019234|Rnaset2a|100037283|ribonuclease T2A	AK018722|Rnaset2a|100037283|ribonuclease T2A	NM_001083938|Rnaset2a|100037283|ribonuclease T2A	AK015947|Rnaset2a|100037283|ribonuclease T2A	NM_026611|Rnaset2b|68195|ribonuclease T2B
mm9_v1_chr16_-_17911283_17911450	0.0621723	FOXN1.p2	AK088520|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK142684|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK148404|Dgcr14|27886|DiGeorge syndrome critical region gene 14	BC013711|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AF037256|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_001081633|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_022408|Dgcr14|27886|DiGeorge syndrome critical region gene 14
mm9_v1_chr6_+_49269294_49269328	0.0621626	FOXN1.p2	AK159264|Ccdc126|57895|coiled-coil domain containing 126
mm9_v1_chr2_+_118860522_118860609	0.0618601	FOXN1.p2	AK041787|Rpusd2|271842|RNA pseudouridylate synthase domain containing 2	AK044767|Rpusd2|271842|RNA pseudouridylate synthase domain containing 2	BC117827|Rpusd2|271842|RNA pseudouridylate synthase domain containing 2	BC117828|Rpusd2|271842|RNA pseudouridylate synthase domain containing 2	NM_173450|Rpusd2|271842|RNA pseudouridylate synthase domain containing 2	AK043340|Rpusd2|271842|RNA pseudouridylate synthase domain containing 2	AK014804|Rpusd2|271842|RNA pseudouridylate synthase domain containing 2	AK035752|Rpusd2|271842|RNA pseudouridylate synthase domain containing 2	AK035800|Rpusd2|271842|RNA pseudouridylate synthase domain containing 2
mm9_v1_chr14_+_31764562_31764704	0.0616939	FOXN1.p2	AK078809|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AJ223071|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	Y09234|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AK147381|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AK132803|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AK149584|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AK168094|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	BC057939|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AF099067|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	NM_011849|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AK144130|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4
mm9_v1_chr10_-_80204945_80204960	0.060906	FOXN1.p2	BC037477|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit	BC048786|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit	BC022171|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit	AB004305|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit	NM_007460|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit
mm9_v1_chr14_+_77436555_77436670	0.0607467	FOXN1.p2	AK077161|Ccdc122|108811|coiled-coil domain containing 122	NM_175369|Ccdc122|108811|coiled-coil domain containing 122	BC096577|Ccdc122|108811|coiled-coil domain containing 122	BC138881|Ccdc122|108811|coiled-coil domain containing 122	BC138883|Ccdc122|108811|coiled-coil domain containing 122	BC145455|Ccdc122|108811|coiled-coil domain containing 122
mm9_v1_chr2_+_124436328_124436346	0.0603702	FOXN1.p2	AK084922|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	AK031307|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr13_-_63532777_63533052	0.0601951	FOXN1.p2	AK196042|Fancc|14088|Fanconi anemia, complementation group C	AK035488|Fancc|14088|Fanconi anemia, complementation group C	AK042226|Fancc|14088|Fanconi anemia, complementation group C	AK082717|Fancc|14088|Fanconi anemia, complementation group C	AK080697|Fancc|14088|Fanconi anemia, complementation group C	AK147025|Fancc|14088|Fanconi anemia, complementation group C	L08266|Fancc|14088|Fanconi anemia, complementation group C	AK163161|Fancc|14088|Fanconi anemia, complementation group C	NM_001042673|Fancc|14088|Fanconi anemia, complementation group C	NM_007985|Fancc|14088|Fanconi anemia, complementation group C
mm9_v1_chr14_+_76245115_76245135	0.0596649	FOXN1.p2	AK166584|Tpt1|22070|tumor protein, translationally-controlled 1	AK169730|Tpt1|22070|tumor protein, translationally-controlled 1
mm9_v1_chr1_+_44176812_44176851	0.0595075	FOXN1.p2	AK047404|Bivm|246229|basic, immunoglobulin-like variable motif containing	NM_144558|Bivm|246229|basic, immunoglobulin-like variable motif containing	AK032375|Bivm|246229|basic, immunoglobulin-like variable motif containing	AK034329|Bivm|246229|basic, immunoglobulin-like variable motif containing
mm9_v1_chr16_+_17646562_17646710	0.058806	FOXN1.p2	NM_001166164|Ccdc74a|72315|coiled-coil domain containing 74A	AK009347|Ccdc74a|72315|coiled-coil domain containing 74A
mm9_v1_chr8_-_125565896_125565896	0.0587233	FOXN1.p2	NM_001081379|Ankrd11|77087|ankyrin repeat domain 11
mm9_v1_chr7_-_150155131_150155168	0.0583089	FOXN1.p2	BC019520|Ascl2|17173|achaete-scute complex homolog 2 (Drosophila)	AK010738|Ascl2|17173|achaete-scute complex homolog 2 (Drosophila)	AK167324|Ascl2|17173|achaete-scute complex homolog 2 (Drosophila)	NM_008554|Ascl2|17173|achaete-scute complex homolog 2 (Drosophila)
mm9_v1_chr11_-_62462024_62462096	0.0573584	FOXN1.p2	BC053455|BC046404|192976|cDNA sequence BC046404	NM_198861|BC046404|192976|cDNA sequence BC046404
mm9_v1_chr7_-_52467196_52467252	0.0564412	FOXN1.p2	AK131694|Dkkl1|50722|dickkopf-like 1	AF274312|Dkkl1|50722|dickkopf-like 1	BC002215|Dkkl1|50722|dickkopf-like 1	NM_015789|Dkkl1|50722|dickkopf-like 1
mm9_v1_chr7_-_134417572_134417575	0.0560895	FOXN1.p2	AK077573|Sephs2|20768|selenophosphate synthetase 2	AK168722|Sephs2|20768|selenophosphate synthetase 2	AK168965|Sephs2|20768|selenophosphate synthetase 2	NM_009266|Sephs2|20768|selenophosphate synthetase 2
mm9_v1_chr17_-_84586361_84586476	0.0557892	FOXN1.p2	M58564|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2
mm9_v1_chr8_+_107872157_107872157	0.0541482	FOXN1.p2	NM_001081332|Slc9a5|277973|solute carrier family 9 (sodium/hydrogen exchanger), member 5
mm9_v1_chr4_+_149611305_149611392	0.0524079	FOXN1.p2	NM_023119|Eno1|13806|enolase 1, alpha non-neuron	AK002336|Eno1|13806|enolase 1, alpha non-neuron	AK014335|Eno1|13806|enolase 1, alpha non-neuron	AK147987|Eno1|13806|enolase 1, alpha non-neuron	AK150161|Eno1|13806|enolase 1, alpha non-neuron	AK150192|Eno1|13806|enolase 1, alpha non-neuron	AK153321|Eno1|13806|enolase 1, alpha non-neuron	AK002322|Eno1|13806|enolase 1, alpha non-neuron	BC003934|Eno1|13806|enolase 1, alpha non-neuron	AK204692|Eno1|13806|enolase 1, alpha non-neuron	AK088788|Eno1|13806|enolase 1, alpha non-neuron	X52379|Eno1|13806|enolase 1, alpha non-neuron	BC003891|Eno1|13806|enolase 1, alpha non-neuron	BC010685|Eno1|13806|enolase 1, alpha non-neuron	BC083334|Eno1|13806|enolase 1, alpha non-neuron	BC024644|Eno1|13806|enolase 1, alpha non-neuron	BC039179|Eno1|13806|enolase 1, alpha non-neuron
mm9_v1_chr5_-_86601802_86601829	0.0522362	FOXN1.p2	AK049603|Uba6|231380|ubiquitin-like modifier activating enzyme 6
mm9_v1_chr16_-_85550617_85550674	0.0516559	FOXN1.p2	BC099957|Cyyr1|224405|cysteine and tyrosine-rich protein 1	NM_144853|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK031840|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AY061854|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK171936|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK163137|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK158088|Cyyr1|224405|cysteine and tyrosine-rich protein 1
mm9_v1_chr13_-_24372584_24372663	0.0501947	FOXN1.p2	BC150819|Lrrc16a|68732|leucine rich repeat containing 16A	AK051570|Lrrc16a|68732|leucine rich repeat containing 16A	NM_026825|Lrrc16a|68732|leucine rich repeat containing 16A	AY437876|Lrrc16a|68732|leucine rich repeat containing 16A
mm9_v1_chr5_-_76792766_76792812	0.0501544	FOXN1.p2	BC125545|Nmu|56183|neuromedin U	BC138071|Nmu|56183|neuromedin U	BC145135|Nmu|56183|neuromedin U	AF203444|Nmu|56183|neuromedin U	NM_019515|Nmu|56183|neuromedin U	AK077478|Nmu|56183|neuromedin U
mm9_v1_chr7_-_13623158_13623326	0.0499944	FOXN1.p2	BC021792|Ube2m|22192|ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast)	NM_145578|Ube2m|22192|ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast)
mm9_v1_chr2_+_157105117_157105161	0.0499367	FOXN1.p2	AK153952|Rpn2|20014|ribophorin II
mm9_v1_chr17_+_28314083_28314176	0.0495401	FOXN1.p2	BC060611|Zfp523|224656|zinc finger protein 523
mm9_v1_chr1_+_192922288_192922292	0.0486614	FOXN1.p2	AK020278|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3	BC117083|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3	BC117085|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3	NM_030060|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3
mm9_v1_chr3_+_108087046_108087050	0.0481041	FOXN1.p2	BC056343|Sort1|20661|sortilin 1	NM_019972|Sort1|20661|sortilin 1
mm9_v1_chr11_+_35583304_35583391	0.0471385	FOXN1.p2	AK136305|Pank3|211347|pantothenate kinase 3	BC027089|Pank3|211347|pantothenate kinase 3
mm9_v1_chr5_+_124990703_124991022	0.0460748	FOXN1.p2	BC131977|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	BC138294|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	BC083140|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	NM_019770|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	AK089965|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	AB025218|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	AK179651|Tmed2|56334|transmembrane emp24 domain trafficking protein 2
mm9_v1_chr7_-_134417519_134417566	0.0450621	FOXN1.p2	BC028966|Sephs2|20768|selenophosphate synthetase 2	BC043334|Sephs2|20768|selenophosphate synthetase 2	BC003760|Sephs2|20768|selenophosphate synthetase 2	U43285|Sephs2|20768|selenophosphate synthetase 2	BC016508|Sephs2|20768|selenophosphate synthetase 2
mm9_v1_chr18_-_84758848_84758918	0.0449661	FOXN1.p2	AK032536|Zfp407|240476|zinc finger protein 407	NM_001033341|Zfp407|240476|zinc finger protein 407
mm9_v1_chr16_+_32332294_32332380	0.0446052	FOXN1.p2	NM_177633|Ubxn7|224111|UBX domain protein 7	AK147730|Ubxn7|224111|UBX domain protein 7	BC062904|Ubxn7|224111|UBX domain protein 7
mm9_v1_chr3_-_88356772_88356884	0.0445973	FOXN1.p2	AJ277386|Lamtor2|83409|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	AK019006|Lamtor2|83409|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	BC031816|Lamtor2|83409|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	NM_031248|Lamtor2|83409|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	AK008126|Lamtor2|83409|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	AK008185|Lamtor2|83409|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	AK008395|Lamtor2|83409|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
mm9_v1_chr1_-_152240082_152240184	0.0436691	FOXN1.p2	NM_001077237|BC003331|226499|cDNA sequence BC003331	NM_145511|BC003331|226499|cDNA sequence BC003331
mm9_v1_chr12_-_80190607_80190656	0.0425133	FOXN1.p2	BC086806|Pigh|110417|phosphatidylinositol glycan anchor biosynthesis, class H	AK030744|Pigh|110417|phosphatidylinositol glycan anchor biosynthesis, class H	AK020902|Pigh|110417|phosphatidylinositol glycan anchor biosynthesis, class H	AK167892|Pigh|110417|phosphatidylinositol glycan anchor biosynthesis, class H	NM_029988|Pigh|110417|phosphatidylinositol glycan anchor biosynthesis, class H
mm9_v1_chr15_-_85412250_85412299	0.0419805	FOXN1.p2	BC058398|Wnt7b|22422|wingless-related MMTV integration site 7B	NM_009528|Wnt7b|22422|wingless-related MMTV integration site 7B
mm9_v1_chr3_+_121977291_121977338	0.0414574	FOXN1.p2	AK133904|Dnttip2|99480|deoxynucleotidyltransferase, terminal, interacting protein 2	AK168536|Dnttip2|99480|deoxynucleotidyltransferase, terminal, interacting protein 2	AK135957|Dnttip2|99480|deoxynucleotidyltransferase, terminal, interacting protein 2	BC028305|Dnttip2|99480|deoxynucleotidyltransferase, terminal, interacting protein 2	NM_153806|Dnttip2|99480|deoxynucleotidyltransferase, terminal, interacting protein 2	AK016368|Dnttip2|99480|deoxynucleotidyltransferase, terminal, interacting protein 2
mm9_v1_chr18_+_9957913_9958236	0.0413238	FOXN1.p2	AK168619|Thoc1|225160|THO complex 1	BC024951|Thoc1|225160|THO complex 1	AK167374|Thoc1|225160|THO complex 1	AK042867|Thoc1|225160|THO complex 1	AK139307|Thoc1|225160|THO complex 1	AK013983|Thoc1|225160|THO complex 1	AK031785|Thoc1|225160|THO complex 1	AK032200|Thoc1|225160|THO complex 1	NM_153552|Thoc1|225160|THO complex 1	AK052835|Thoc1|225160|THO complex 1	AK082591|Thoc1|225160|THO complex 1
mm9_v1_chr2_-_93302538_93302610	0.0410472	FOXN1.p2	D14883|Cd82|12521|CD82 antigen	AK160907|Cd82|12521|CD82 antigen	AK158033|Cd82|12521|CD82 antigen	AK168097|Cd82|12521|CD82 antigen
mm9_v1_chr17_+_44914115_44914127	0.040013	FOXN1.p2	AK075916|Supt3h|109115|suppressor of Ty 3 homolog (S. cerevisiae)	NM_178652|Supt3h|109115|suppressor of Ty 3 homolog (S. cerevisiae)
mm9_v1_chr10_+_80653139_80653168	0.0398209	FOXN1.p2	AK183846|Dapk3|13144|death-associated protein kinase 3	AK188664|Dapk3|13144|death-associated protein kinase 3	AK189174|Dapk3|13144|death-associated protein kinase 3	AK217193|Dapk3|13144|death-associated protein kinase 3
mm9_v1_chr2_-_25080160_25080179	0.0395121	FOXN1.p2	BC022919|Tubb2c|227613|tubulin, beta 2C	BC083319|Tubb2c|227613|tubulin, beta 2C	AK015901|Tubb2c|227613|tubulin, beta 2C	AK167022|Tubb2c|227613|tubulin, beta 2C	AK076895|Tubb2c|227613|tubulin, beta 2C	AK146587|Tubb2c|227613|tubulin, beta 2C
mm9_v1_chr9_-_59334089_59334191	0.0394546	FOXN1.p2	BC038034|Arih1|23806|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)	NM_019927|Arih1|23806|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)
mm9_v1_chr7_+_30023324_30023364	0.0386523	FOXN1.p2	NM_001110201|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)	NM_029887|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)	BC109331|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)	AK135529|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)
mm9_v1_chr16_+_32099870_32099906	0.0381647	FOXN1.p2	AK005324|1500031L02Rik|66994|RIKEN cDNA 1500031L02 gene	NM_025892|1500031L02Rik|66994|RIKEN cDNA 1500031L02 gene	AK007713|1500031L02Rik|66994|RIKEN cDNA 1500031L02 gene
mm9_v1_chr7_-_74367343_74367421	0.0381586	FOXN1.p2	AK038598|1700112J16Rik|76628|RIKEN cDNA 1700112J16 gene
mm9_v1_chr14_+_76245031_76245114	0.0371441	FOXN1.p2	NM_009429|Tpt1|22070|tumor protein, translationally-controlled 1
mm9_v1_chr11_+_116976475_116976498	0.0370456	FOXN1.p2	AK047396|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	NM_001166506|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	NM_001166507|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	NM_028777|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)
mm9_v1_chr2_+_29475234_29475393	0.0358829	FOXN1.p2	AK147468|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147470|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_001039086|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_001039087|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_054050|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147696|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147506|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AF348669|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr5_-_148211857_148211870	0.0350388	FOXN1.p2	BC109003|Flt3|14255|FMS-like tyrosine kinase 3	BC109004|Flt3|14255|FMS-like tyrosine kinase 3	M64689|Flt3|14255|FMS-like tyrosine kinase 3
mm9_v1_chr8_-_20020350_20020421	0.0345058	FOXN1.p2	BC025151|2610005L07Rik|381598|cadherin 11 pseudogene	AK009182|2610005L07Rik|381598|cadherin 11 pseudogene	AK160987|2610005L07Rik|381598|cadherin 11 pseudogene	AK131627|2610005L07Rik|381598|cadherin 11 pseudogene	AK035187|2610005L07Rik|381598|cadherin 11 pseudogene
mm9_v1_chr14_+_76245144_76245241	0.0336344	FOXN1.p2	BC092381|Tpt1|22070|tumor protein, translationally-controlled 1
mm9_v1_chr17_+_37079995_37080032	0.0336285	FOXN1.p2	BC132405|Rnf39|386454|ring finger protein 39	BC145677|Rnf39|386454|ring finger protein 39	NM_001099632|Rnf39|386454|ring finger protein 39
mm9_v1_chr2_-_37214740_37214764	0.0334656	FOXN1.p2	AK028668|Pdcl|67466|phosducin-like	AK028814|Pdcl|67466|phosducin-like	AK166983|Pdcl|67466|phosducin-like	BC006578|Pdcl|67466|phosducin-like	AK133747|Pdcl|67466|phosducin-like
mm9_v1_chr9_-_72833159_72833188	0.0329624	FOXN1.p2	BC099568|Gm5918|546143|predicted gene 5918	BC048630|Gm5918|546143|predicted gene 5918	NM_001198789|Gm5918|546143|predicted gene 5918	AK145722|Gm5918|546143|predicted gene 5918
mm9_v1_chr8_-_92872139_92872206	0.0325745	FOXN1.p2	AK082602|Tox3|244579|TOX high mobility group box family member 3	NM_172913|Tox3|244579|TOX high mobility group box family member 3
mm9_v1_chr15_-_79377170_79377216	0.0320815	FOXN1.p2	BC096036|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	NM_001040187|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	NM_199080|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
mm9_v1_chr4_-_11181388_11181409	0.0308682	FOXN1.p2	AK140829|Ints8|72656|integrator complex subunit 8	NM_001159595|Ints8|72656|integrator complex subunit 8	NM_178112|Ints8|72656|integrator complex subunit 8
mm9_v1_chr6_-_39068241_39068254	0.0303955	FOXN1.p2	AK053205|Parp12|243771|poly (ADP-ribose) polymerase family, member 12	AK081528|Parp12|243771|poly (ADP-ribose) polymerase family, member 12
mm9_v1_chr14_+_25309895_25309936	0.0292527	FOXN1.p2	NM_011297|Rps24|20088|ribosomal protein S24	NM_207634|Rps24|20088|ribosomal protein S24	NM_207635|Rps24|20088|ribosomal protein S24
mm9_v1_chr11_+_102889847_102889897	0.0291739	FOXN1.p2	AF043326|Nmt1|18107|N-myristoyltransferase 1	AK146523|Nmt1|18107|N-myristoyltransferase 1	BC021635|Nmt1|18107|N-myristoyltransferase 1	BC016526|Nmt1|18107|N-myristoyltransferase 1	NM_008707|Nmt1|18107|N-myristoyltransferase 1
mm9_v1_chr6_-_124364880_124365084	0.028956	FOXN1.p2	AK088886|Pex5|19305|peroxisomal biogenesis factor 5	AK145361|Pex5|19305|peroxisomal biogenesis factor 5	BC029748|Pex5|19305|peroxisomal biogenesis factor 5	AK145111|Pex5|19305|peroxisomal biogenesis factor 5	AJ416473|Pex5|19305|peroxisomal biogenesis factor 5	AK161470|Pex5|19305|peroxisomal biogenesis factor 5	NM_008995|Pex5|19305|peroxisomal biogenesis factor 5	NM_175933|Pex5|19305|peroxisomal biogenesis factor 5
mm9_v1_chrX_+_71032421_71032564	0.0287905	FOXN1.p2	AK142600|Ssr4|20832|signal sequence receptor, delta	NM_009279|Ssr4|20832|signal sequence receptor, delta	AK003044|Ssr4|20832|signal sequence receptor, delta	AK160089|Ssr4|20832|signal sequence receptor, delta	AK013723|Ssr4|20832|signal sequence receptor, delta	BC012971|Ssr4|20832|signal sequence receptor, delta	AK007921|Ssr4|20832|signal sequence receptor, delta	BC019419|Ssr4|20832|signal sequence receptor, delta	BC008172|Ssr4|20832|signal sequence receptor, delta
mm9_v1_chr9_-_37240759_37240759	0.0284222	FOXN1.p2	NM_001164767|Robo3|19649|roundabout homolog 3 (Drosophila)
mm9_v1_chr9_-_44773594_44773682	0.0282777	FOXN1.p2	BC025043|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028721|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC006649|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC021406|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028850|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK172893|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	NM_145400|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)
mm9_v1_chrX_+_71032398_71032403	0.0280226	FOXN1.p2	X90582|Ssr4|20832|signal sequence receptor, delta
mm9_v1_chr7_+_35904347_35904361	0.0273145	FOXN1.p2	AK155281|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha
mm9_v1_chrX_+_71032347_71032381	0.0269887	FOXN1.p2	NM_001166480|Ssr4|20832|signal sequence receptor, delta
mm9_v1_chr2_+_144353506_144353513	0.0265191	FOXN1.p2	AK013084|Polr3f|70408|polymerase (RNA) III (DNA directed) polypeptide F
mm9_v1_chr4_-_10934608_10934850	0.0263884	FOXN1.p2	BC016134|Plekhf2|71801|pleckstrin homology domain containing, family F (with FYVE domain) member 2	BC039276|Plekhf2|71801|pleckstrin homology domain containing, family F (with FYVE domain) member 2	AK154634|Plekhf2|71801|pleckstrin homology domain containing, family F (with FYVE domain) member 2	AK033666|Plekhf2|71801|pleckstrin homology domain containing, family F (with FYVE domain) member 2	NM_175175|Plekhf2|71801|pleckstrin homology domain containing, family F (with FYVE domain) member 2
mm9_v1_chr18_-_35658485_35658600	0.0259955	FOXN1.p2	BC028488|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	AJ297884|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	AK170415|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	BC016466|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	BC016119|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	NM_030749|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
mm9_v1_chr4_-_148800321_148800361	0.0259897	FOXN1.p2	AK083409|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	AK029914|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm9_v1_chr5_-_37187944_37188018	0.0253761	FOXN1.p2	AK009827|Mrfap1|67568|Morf4 family associated protein 1	BC010209|Mrfap1|67568|Morf4 family associated protein 1	AK170909|Mrfap1|67568|Morf4 family associated protein 1	AK170984|Mrfap1|67568|Morf4 family associated protein 1	AK017832|Mrfap1|67568|Morf4 family associated protein 1	AK167112|Mrfap1|67568|Morf4 family associated protein 1	AB041651|Mrfap1|67568|Morf4 family associated protein 1	AK159464|Mrfap1|67568|Morf4 family associated protein 1	AK005313|Mrfap1|67568|Morf4 family associated protein 1	NM_026242|Mrfap1|67568|Morf4 family associated protein 1
mm9_v1_chr1_+_152239986_152240102	0.0248314	FOXN1.p2	BC141406|Tpr|108989|translocated promoter region	BC141410|Tpr|108989|translocated promoter region
mm9_v1_chr11_+_77796215_77796321	0.0233645	FOXN1.p2	AK170155|Phf12|268448|PHD finger protein 12	AK089226|Phf12|268448|PHD finger protein 12	AK010807|Phf12|268448|PHD finger protein 12	AK155354|Phf12|268448|PHD finger protein 12	AK053787|Phf12|268448|PHD finger protein 12	NM_174852|Phf12|268448|PHD finger protein 12
mm9_v1_chr19_+_4839365_4839460	0.0224014	FOXN1.p2	NM_207268|Ccdc87|399599|coiled-coil domain containing 87	AK029877|Ccdc87|399599|coiled-coil domain containing 87	BC145660|Ccdc87|399599|coiled-coil domain containing 87
mm9_v1_chr6_+_115551903_115551958	0.0221843	FOXN1.p2	BC025547|Mkrn2|67027|makorin, ring finger protein, 2	AK009515|Mkrn2|67027|makorin, ring finger protein, 2	AK077926|Mkrn2|67027|makorin, ring finger protein, 2	NM_023290|Mkrn2|67027|makorin, ring finger protein, 2
mm9_v1_chr4_-_118905241_118905332	0.0220675	FOXN1.p2	AK158349|AU022252|230696|expressed sequence AU022252	AK167445|AU022252|230696|expressed sequence AU022252	BC035522|AU022252|230696|expressed sequence AU022252	AK082225|4930538K18Rik|75180|RIKEN cDNA 4930538K18 gene	BC089614|AU022252|230696|expressed sequence AU022252	NM_001012400|AU022252|230696|expressed sequence AU022252
mm9_v1_chr4_-_11181373_11181380	0.0199872	FOXN1.p2	AK169552|Ints8|72656|integrator complex subunit 8	AK049513|Ints8|72656|integrator complex subunit 8
mm9_v1_chr18_+_42671130_42671146	0.0197921	FOXN1.p2	NM_001039474|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr14_+_25309955_25309963	0.0196413	FOXN1.p2	BC081457|Rps24|20088|ribosomal protein S24	BC091748|Rps24|20088|ribosomal protein S24	X60289|Rps24|20088|ribosomal protein S24
mm9_v1_chr1_+_173200454_173200531	0.0195835	FOXN1.p2	NM_020579|B4galt3|57370|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	AK155471|B4galt3|57370|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	BC013619|B4galt3|57370|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	BC004095|B4galt3|57370|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	BC021830|B4galt3|57370|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	AF142671|B4galt3|57370|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3
mm9_v1_chr11_+_102526898_102526901	0.0193679	FOXN1.p2	AK163979|Gm1564|268491|predicted gene 1564	NM_001127576|Gm1564|268491|predicted gene 1564
mm9_v1_chr1_-_33871261_33871282	0.0192412	FOXN1.p2	AK122541|Zfp451|98403|zinc finger protein 451	BC019546|Zfp451|98403|zinc finger protein 451	AK030088|Zfp451|98403|zinc finger protein 451	NM_133817|Zfp451|98403|zinc finger protein 451
mm9_v1_chr1_+_193730645_193730708	0.0188155	FOXN1.p2	AK145100|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1	NM_009579|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1	BC052166|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1
mm9_v1_chrX_+_34283626_34283705	0.0179176	FOXN1.p2	BC147709|Slc25a43|194744|solute carrier family 25, member 43	BC147717|Slc25a43|194744|solute carrier family 25, member 43	BC172137|Slc25a43|194744|solute carrier family 25, member 43	NM_001085497|Slc25a43|194744|solute carrier family 25, member 43	AK153028|Slc25a43|194744|solute carrier family 25, member 43
mm9_v1_chr15_-_89240933_89240933	0.0177715	FOXN1.p2	BC048615|1700007E06Rik|75459|RIKEN cDNA 1700007E06 gene	NM_001162880|1700007E06Rik|75459|RIKEN cDNA 1700007E06 gene
mm9_v1_chr18_+_74375754_74375784	0.0175029	FOXN1.p2	AK017941|Cxxc1|74322|CXXC finger 1 (PHD domain)	AK146688|Cxxc1|74322|CXXC finger 1 (PHD domain)
mm9_v1_chr12_+_3235767_3235839	0.0174762	FOXN1.p2	AK007702|1700012B15Rik|74173|RIKEN cDNA 1700012B15 gene	BC038315|1700012B15Rik|74173|RIKEN cDNA 1700012B15 gene
mm9_v1_chr2_+_151319915_151320083	0.0169706	FOXN1.p2	AK039136|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	AK137088|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	AK013024|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	BC050936|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	NM_198326|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	BC106101|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	AK181317|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)
mm9_v1_chr2_-_130665832_130665882	0.015894	FOXN1.p2	BC052447|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	NM_029432|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK015050|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK158367|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK089462|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK143611|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK045996|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene
mm9_v1_chr1_+_10029834_10029872	0.0153814	FOXN1.p2	AK032310|Cspp1|211660|centrosome and spindle pole associated protein 1	AK077173|Cspp1|211660|centrosome and spindle pole associated protein 1	AK013065|Cspp1|211660|centrosome and spindle pole associated protein 1	AK015133|Cspp1|211660|centrosome and spindle pole associated protein 1
mm9_v1_chr2_-_37214772_37214851	0.0151797	FOXN1.p2	AK004704|Pdcl|67466|phosducin-like	NM_026176|Pdcl|67466|phosducin-like
mm9_v1_chr18_-_64676090_64676141	0.0145436	FOXN1.p2	BC005473|Nars|70223|asparaginyl-tRNA synthetase
mm9_v1_chr12_+_103367600_103367638	0.0145355	FOXN1.p2	BC137945|Slc24a4|238384|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	BC171939|Slc24a4|238384|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	AY156046|Slc24a4|238384|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	NM_172152|Slc24a4|238384|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	AK212667|Slc24a4|238384|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm9_v1_chr1_-_90102270_90102322	0.0136457	FOXN1.p2	AK005690|Dnajb3|15504|DnaJ (Hsp40) homolog, subfamily B, member 3	AK005688|Dnajb3|15504|DnaJ (Hsp40) homolog, subfamily B, member 3	BC048490|Dnajb3|15504|DnaJ (Hsp40) homolog, subfamily B, member 3	NM_008299|Dnajb3|15504|DnaJ (Hsp40) homolog, subfamily B, member 3	U95607|Dnajb3|15504|DnaJ (Hsp40) homolog, subfamily B, member 3
mm9_v1_chr3_-_58329346_58329433	0.0132668	FOXN1.p2	AK178735|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK179107|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK185536|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK190535|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK194381|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK195463|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK209611|Serp1|28146|stress-associated endoplasmic reticulum protein 1
mm9_v1_chr17_+_15636851_15636923	0.0132323	FOXN1.p2	AK085037|Tbp|21374|TATA box binding protein	NM_013684|Tbp|21374|TATA box binding protein	BC016476|Tbp|21374|TATA box binding protein	AK089397|Tbp|21374|TATA box binding protein	BC050136|Tbp|21374|TATA box binding protein	U63933|Tbp|21374|TATA box binding protein	BC012685|Tbp|21374|TATA box binding protein
mm9_v1_chr11_+_77796383_77796501	0.0131156	FOXN1.p2	AK141796|Phf12|268448|PHD finger protein 12
mm9_v1_chr7_+_16986478_16986599	0.0129124	FOXN1.p2	NM_198631|Zc3h4|330474|zinc finger CCCH-type containing 4	AK151148|Zc3h4|330474|zinc finger CCCH-type containing 4	AK151306|Zc3h4|330474|zinc finger CCCH-type containing 4	BC057627|Zc3h4|330474|zinc finger CCCH-type containing 4
mm9_v1_chr10_-_29081811_29081881	0.012868	FOXN1.p2	AK012080|Rnf146|68031|ring finger protein 146	AK169237|Rnf146|68031|ring finger protein 146
mm9_v1_chrX_+_17739762_17739792	0.0127815	FOXN1.p2	AK164941|Kdm6a|22289|4lysine (K)-specific demethylase 6A	AK144654|Kdm6a|22289|4lysine (K)-specific demethylase 6A	AK080370|Kdm6a|22289|4lysine (K)-specific demethylase 6A	BC053433|Kdm6a|22289|4lysine (K)-specific demethylase 6A	NM_009483|Kdm6a|22289|4lysine (K)-specific demethylase 6A
mm9_v1_chr1_+_87942842_87942846	0.012408	FOXN1.p2	AK013367|2810459M11Rik|72792|RIKEN cDNA 2810459M11 gene
mm9_v1_chr15_-_60654198_60654219	0.012174	FOXN1.p2	AK162412|Fam84b|399603|family with sequence similarity 84, member B
mm9_v1_chr5_-_121641282_121641449	0.012168	FOXN1.p2	D84372|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	BC057398|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	BC028513|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK011468|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK147354|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	BC059278|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK159501|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK159587|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	NM_001109992|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	NM_011202|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11
mm9_v1_chr11_-_69793943_69794050	0.0111601	FOXN1.p2	BC003752|Rai12|54351|retinoic acid induced 12	AF004107|Rai12|54351|retinoic acid induced 12
mm9_v1_chr6_+_85865746_85865786	0.0111589	FOXN1.p2	BC024858|Tprkb|69786|Tp53rk binding protein	AK188541|Tprkb|69786|Tp53rk binding protein
mm9_v1_chr12_+_88784853_88784880	0.0106978	FOXN1.p2	AK007699|1810035L17Rik|380773|RIKEN cDNA 1810035L17 gene	BC116739|1810035L17Rik|380773|RIKEN cDNA 1810035L17 gene	BC116741|1810035L17Rik|380773|RIKEN cDNA 1810035L17 gene	BC048513|1810035L17Rik|380773|RIKEN cDNA 1810035L17 gene	AK028746|1810035L17Rik|380773|RIKEN cDNA 1810035L17 gene	BC065396|1810035L17Rik|380773|RIKEN cDNA 1810035L17 gene	AJ293625|1810035L17Rik|380773|RIKEN cDNA 1810035L17 gene	BC100567|1810035L17Rik|380773|RIKEN cDNA 1810035L17 gene
mm9_v1_chr11_+_3352465_3352485	0.0103895	FOXN1.p2	AK018450|8430429K09Rik|71523|RIKEN cDNA 8430429K09 gene	AK086952|8430429K09Rik|71523|RIKEN cDNA 8430429K09 gene
mm9_v1_chr13_+_22127689_22127755	0.00928444	FOXN1.p2	BC147143|Hist1h2bk|319184|histone cluster 1, H2bk	BC147144|Hist1h2bk|319184|histone cluster 1, H2bk	NM_175665|Hist1h2bk|319184|histone cluster 1, H2bk
mm9_v1_chrX_-_35809466_35809639	0.0091729	FOXN1.p2	BC138718|Lamp2|16784|lysosomal-associated membrane protein 2	BC138723|Lamp2|16784|lysosomal-associated membrane protein 2	J05287|Lamp2|16784|lysosomal-associated membrane protein 2	AK048174|Lamp2|16784|lysosomal-associated membrane protein 2	AK159272|Lamp2|16784|lysosomal-associated membrane protein 2	AK159731|Lamp2|16784|lysosomal-associated membrane protein 2	AK136550|Lamp2|16784|lysosomal-associated membrane protein 2	AK012149|Lamp2|16784|lysosomal-associated membrane protein 2	AK032974|Lamp2|16784|lysosomal-associated membrane protein 2	AK150766|Lamp2|16784|lysosomal-associated membrane protein 2	AK088804|Lamp2|16784|lysosomal-associated membrane protein 2	AK146731|Lamp2|16784|lysosomal-associated membrane protein 2	AK078193|Lamp2|16784|lysosomal-associated membrane protein 2	NM_001017959|Lamp2|16784|lysosomal-associated membrane protein 2	NM_010685|Lamp2|16784|lysosomal-associated membrane protein 2	AK163933|Lamp2|16784|lysosomal-associated membrane protein 2
mm9_v1_chr10_-_87819740_87819750	0.0090438	FOXN1.p2	BC021433|Dram1|71712|DNA-damage regulated autophagy modulator 1	AK151184|Dram1|71712|DNA-damage regulated autophagy modulator 1
mm9_v1_chr14_-_67690829_67691018	0.00856148	FOXN1.p2	AK201086|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	BC022916|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform
mm9_v1_chr15_-_98764817_98764871	0.00743554	FOXN1.p2	BC063777|Tuba1b|22143|tubulin, alpha 1B	BC108394|Tuba1b|22143|tubulin, alpha 1B	NM_011654|Tuba1b|22143|tubulin, alpha 1B	M13446|Tuba1b|22143|tubulin, alpha 1B	BC083120|Tuba1b|22143|tubulin, alpha 1B	BC108337|Tuba1b|22143|tubulin, alpha 1B	BC008117|Tuba1b|22143|tubulin, alpha 1B	BC098321|Tuba1b|22143|tubulin, alpha 1B	BC002219|Tuba1b|22143|tubulin, alpha 1B	AK151199|Tuba1b|22143|tubulin, alpha 1B	AK151809|Tuba1b|22143|tubulin, alpha 1B	AK152298|Tuba1b|22143|tubulin, alpha 1B	AK153254|Tuba1b|22143|tubulin, alpha 1B	AK137885|Tuba1b|22143|tubulin, alpha 1B	AK153064|Tuba1b|22143|tubulin, alpha 1B	AK168770|Tuba1b|22143|tubulin, alpha 1B	AK169075|Tuba1b|22143|tubulin, alpha 1B	AK150968|Tuba1b|22143|tubulin, alpha 1B	AK075955|Tuba1b|22143|tubulin, alpha 1B	AK150128|Tuba1b|22143|tubulin, alpha 1B	AK150179|Tuba1b|22143|tubulin, alpha 1B	AK164428|Tuba1b|22143|tubulin, alpha 1B	AK169092|Tuba1b|22143|tubulin, alpha 1B	AK169130|Tuba1b|22143|tubulin, alpha 1B	AK169665|Tuba1b|22143|tubulin, alpha 1B
mm9_v1_chr7_+_146038086_146038160	0.00703613	FOXN1.p2	AF366393|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform
mm9_v1_chr2_+_28980511_28980658	0.00616748	FOXN1.p2	AK044730|Setx|269254|senataxin	NM_198033|Setx|269254|senataxin
mm9_v1_chr13_+_3537308_3537410	0.00598812	FOXN1.p2	NM_008112|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK143681|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK150655|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK167659|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK149958|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK078514|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK079690|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK090083|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK137761|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK143633|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK013104|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK159734|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK166317|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK007871|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK078144|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK083063|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK150356|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK152250|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	BC055341|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	BC024971|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK153381|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK169299|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2
mm9_v1_chr19_+_41557168_41557205	0.00573715	FOXN1.p2	AK077424|Lcor|212391|ligand dependent nuclear receptor corepressor	AB076079|Lcor|212391|ligand dependent nuclear receptor corepressor
mm9_v1_chr5_-_4104331_4104507	0.00534474	FOXN1.p2	AK028355|Cyp51|13121|cytochrome P450, family 51	BC031813|Cyp51|13121|cytochrome P450, family 51	AK031059|Cyp51|13121|cytochrome P450, family 51	AK075764|Cyp51|13121|cytochrome P450, family 51	AK076983|Cyp51|13121|cytochrome P450, family 51	AF166266|Cyp51|13121|cytochrome P450, family 51	AK028815|Cyp51|13121|cytochrome P450, family 51
mm9_v1_chr13_-_8995234_8995327	0.00449833	FOXN1.p2	AK163372|Gtpbp4|69237|GTP binding protein 4	BC005514|Gtpbp4|69237|GTP binding protein 4	AF325354|Gtpbp4|69237|GTP binding protein 4	BC025431|Gtpbp4|69237|GTP binding protein 4	AK164330|Gtpbp4|69237|GTP binding protein 4	NM_027000|Gtpbp4|69237|GTP binding protein 4	AK166711|Gtpbp4|69237|GTP binding protein 4	AF348208|Gtpbp4|69237|GTP binding protein 4	AK011580|Gtpbp4|69237|GTP binding protein 4	AK141852|Gtpbp4|69237|GTP binding protein 4
mm9_v1_chr19_+_5023859_5024113	0.00394686	FOXN1.p2	BC048958|Slc29a2|13340|solute carrier family 29 (nucleoside transporters), member 2	NM_007854|Slc29a2|13340|solute carrier family 29 (nucleoside transporters), member 2	AK010950|Slc29a2|13340|solute carrier family 29 (nucleoside transporters), member 2	AK154310|Slc29a2|13340|solute carrier family 29 (nucleoside transporters), member 2	AF183397|Slc29a2|13340|solute carrier family 29 (nucleoside transporters), member 2	AK083484|Slc29a2|13340|solute carrier family 29 (nucleoside transporters), member 2	AK144451|Slc29a2|13340|solute carrier family 29 (nucleoside transporters), member 2
mm9_v1_chr6_+_85865712_85865731	0.00353395	FOXN1.p2	NM_001170488|Tprkb|69786|Tp53rk binding protein	NM_176842|Tprkb|69786|Tp53rk binding protein	AK007695|Tprkb|69786|Tp53rk binding protein	BC027162|Tprkb|69786|Tp53rk binding protein
mm9_v1_chr13_+_38437584_38437664	0.00351884	FOXN1.p2	NM_007556|Bmp6|12161|bone morphogenetic protein 6	X80992|Bmp6|12161|bone morphogenetic protein 6	BC138593|Bmp6|12161|bone morphogenetic protein 6	BC138595|Bmp6|12161|bone morphogenetic protein 6
mm9_v1_chr11_+_120534337_120534436	0.00344065	FOXN1.p2	BC022115|Aspscr1|68938|alveolar soft part sarcoma chromosome region, candidate 1 (human)	BC019177|Aspscr1|68938|alveolar soft part sarcoma chromosome region, candidate 1 (human)	BC031153|Aspscr1|68938|alveolar soft part sarcoma chromosome region, candidate 1 (human)	AY349133|Aspscr1|68938|alveolar soft part sarcoma chromosome region, candidate 1 (human)	AK088197|Aspscr1|68938|alveolar soft part sarcoma chromosome region, candidate 1 (human)
mm9_v1_chr7_-_19495693_19495764	0.00322146	FOXN1.p2	AK082980|Ccdc61|232933|coiled-coil domain containing 61	AK146297|Ccdc61|232933|coiled-coil domain containing 61	NM_001033314|Ccdc61|232933|coiled-coil domain containing 61
mm9_v1_chr8_-_26895633_26895758	0.00303695	FOXN1.p2	BC058518|Bag4|67384|BCL2-associated athanogene 4	AK162658|Bag4|67384|BCL2-associated athanogene 4	BC037239|Bag4|67384|BCL2-associated athanogene 4	AK010765|Bag4|67384|BCL2-associated athanogene 4	AK136899|Bag4|67384|BCL2-associated athanogene 4	AK160316|Bag4|67384|BCL2-associated athanogene 4	AF332863|Bag4|67384|BCL2-associated athanogene 4	NM_026121|Bag4|67384|BCL2-associated athanogene 4	BC138201|Bag4|67384|BCL2-associated athanogene 4	BC145986|Bag4|67384|BCL2-associated athanogene 4
mm9_v1_chr15_+_99532698_99532771	0.00230757	FOXN1.p2	NM_031842|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC059921|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	M25773|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	U66620|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC079839|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr2_+_32251776_32251794	0.00192666	FOXN1.p2	BC004846|Ptges2|96979|prostaglandin E synthase 2	AK050616|Ptges2|96979|prostaglandin E synthase 2	AK002798|Ptges2|96979|prostaglandin E synthase 2
mm9_v1_chr2_-_128513089_128513155	0.00137776	FOXN1.p2	BC057201|Anapc1|17222|anaphase promoting complex subunit 1	AK149762|Anapc1|17222|anaphase promoting complex subunit 1	AK052404|Anapc1|17222|anaphase promoting complex subunit 1	AK053383|Anapc1|17222|anaphase promoting complex subunit 1	AK090134|Anapc1|17222|anaphase promoting complex subunit 1	AK054305|Anapc1|17222|anaphase promoting complex subunit 1	BC139002|Anapc1|17222|anaphase promoting complex subunit 1	BC145492|Anapc1|17222|anaphase promoting complex subunit 1	AK164804|Anapc1|17222|anaphase promoting complex subunit 1	X80169|Anapc1|17222|anaphase promoting complex subunit 1	AK077847|Anapc1|17222|anaphase promoting complex subunit 1	NM_008569|Anapc1|17222|anaphase promoting complex subunit 1
mm9_v1_chr19_+_37282150_37282364	0.000677104	FOXN1.p2	AK007511|March5|69104|membrane-associated ring finger (C3HC4) 5	BC132455|March5|69104|membrane-associated ring finger (C3HC4) 5	BC132457|March5|69104|membrane-associated ring finger (C3HC4) 5	BC064752|March5|69104|membrane-associated ring finger (C3HC4) 5	BC107215|March5|69104|membrane-associated ring finger (C3HC4) 5	BC107214|March5|69104|membrane-associated ring finger (C3HC4) 5
mm9_v1_chr19_+_5601857_5601905	0.000554389	FOXN1.p2	NM_026616|Rnaseh2c|68209|ribonuclease H2, subunit C	AF346604|Rnaseh2c|68209|ribonuclease H2, subunit C	AK018776|Rnaseh2c|68209|ribonuclease H2, subunit C	AK011556|Rnaseh2c|68209|ribonuclease H2, subunit C	BC024333|Rnaseh2c|68209|ribonuclease H2, subunit C
