mm9_v1_chr10_+_20760625_20760625	28.2455	FOXP3.p2	AK161335|Ahi1|52906|Abelson helper integration site 1	NM_001177776|Ahi1|52906|Abelson helper integration site 1
mm9_v1_chr3_-_126646303_126646303	25.2668	FOXP3.p2	BC043123|Ank2|109676|ankyrin 2, brain	NM_001034168|Ank2|109676|ankyrin 2, brain
mm9_v1_chrX_+_155897056_155897081	20.9952	FOXP3.p2	AK019929|Mtap7d2|78283|MAP7 domain containing 2	AK031868|Mtap7d2|78283|MAP7 domain containing 2	AK043342|Mtap7d2|78283|MAP7 domain containing 2
mm9_v1_chr19_+_4711220_4711230	19.2185	FOXP3.p2	BC079860|Spnb3|20743|spectrin beta 3	NM_021287|Spnb3|20743|spectrin beta 3
mm9_v1_chr2_+_135883662_135883710	17.7672	FOXP3.p2	NM_029530|6330527O06Rik|76161|RIKEN cDNA 6330527O06 gene
mm9_v1_chr19_-_8913619_8913779	17.2246	FOXP3.p2	BC029680|Gng3|14704|guanine nucleotide binding protein (G protein), gamma 3	AK032646|Gng3|14704|guanine nucleotide binding protein (G protein), gamma 3	AK004459|Gng3|14704|guanine nucleotide binding protein (G protein), gamma 3	NM_010316|Gng3|14704|guanine nucleotide binding protein (G protein), gamma 3
mm9_v1_chr19_+_4711207_4711210	16.6021	FOXP3.p2	AK147671|Spnb3|20743|spectrin beta 3
mm9_v1_chr9_+_111277323_111277357	16.5813	FOXP3.p2	BC086653|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1
mm9_v1_chr8_-_73316331_73316346	16.0999	FOXP3.p2	NM_199308|Mast3|546071|microtubule associated serine/threonine kinase 3	AK140821|Mast3|546071|microtubule associated serine/threonine kinase 3
mm9_v1_chr2_+_135883963_135884022	14.7266	FOXP3.p2	AK018222|6330527O06Rik|76161|RIKEN cDNA 6330527O06 gene	AK045946|6330527O06Rik|76161|RIKEN cDNA 6330527O06 gene
mm9_v1_chr8_+_12984287_12984308	13.7606	FOXP3.p2	AK147252|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr13_+_43218207_43218244	11.4509	FOXP3.p2	NM_001005748|Phactr1|218194|phosphatase and actin regulator 1	AK166463|Phactr1|218194|phosphatase and actin regulator 1	BC025873|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr6_-_128493413_128493444	11.2415	FOXP3.p2	BC048546|BC048546|232400|cDNA sequence BC048546
mm9_v1_chr18_+_23573939_23573956	9.84278	FOXP3.p2	BC040364|Dtna|13527|dystrobrevin alpha
mm9_v1_chr15_-_98568883_98568907	9.42242	FOXP3.p2	
mm9_v1_chr18_+_23573977_23574064	8.34919	FOXP3.p2	AF143543|Dtna|13527|dystrobrevin alpha	AK019477|Dtna|13527|dystrobrevin alpha	AK003829|Dtna|13527|dystrobrevin alpha	AF143542|Dtna|13527|dystrobrevin alpha	AF143544|Dtna|13527|dystrobrevin alpha
mm9_v1_chr4_-_46416895_46416973	7.51769	FOXP3.p2	AK077692|Hemgn|93966|hemogen	AY699986|Hemgn|93966|hemogen	AK156536|Hemgn|93966|hemogen	AK171890|Hemgn|93966|hemogen	AK172421|Hemgn|93966|hemogen
mm9_v1_chr9_+_34296412_34296564	7.37056	FOXP3.p2	AK045373|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	BC063072|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	AK038385|Kirrel3|67703|kin of IRRE like 3 (Drosophila)
mm9_v1_chr2_+_84820615_84820637	7.3299	FOXP3.p2	AK156715|Prg2|19074|proteoglycan 2, bone marrow	AK010901|Prg2|19074|proteoglycan 2, bone marrow	NM_008920|Prg2|19074|proteoglycan 2, bone marrow	BC109348|Prg2|19074|proteoglycan 2, bone marrow
mm9_v1_chr6_-_93863547_93863683	7.03766	FOXP3.p2	AK163800|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083321|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	BC060273|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083320|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr12_+_90191833_90191842	6.87623	FOXP3.p2	NM_172544|Nrxn3|18191|neurexin III	AK032126|Nrxn3|18191|neurexin III
mm9_v1_chrX_+_133357268_133357438	6.62362	FOXP3.p2	AK160872|Plp1|18823|proteolipid protein (myelin) 1	AK134554|Plp1|18823|proteolipid protein (myelin) 1	M15442|Plp1|18823|proteolipid protein (myelin) 1	AK077564|Plp1|18823|proteolipid protein (myelin) 1	BC027010|Plp1|18823|proteolipid protein (myelin) 1	NM_011123|Plp1|18823|proteolipid protein (myelin) 1	AK192772|Plp1|18823|proteolipid protein (myelin) 1	AK203421|Plp1|18823|proteolipid protein (myelin) 1
mm9_v1_chr7_+_107423813_107423829	6.25286	FOXP3.p2	AK164085|Pgm2l1|70974|phosphoglucomutase 2-like 1
mm9_v1_chr6_-_148937854_148937926	6.13938	FOXP3.p2	AK143126|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr9_-_103595136_103595138	5.95051	FOXP3.p2	AK132350|Tmem108|81907|transmembrane protein 108
mm9_v1_chr15_-_88808967_88808984	5.89677	FOXP3.p2	AK030396|Mlc1|170790|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	AK043757|Mlc1|170790|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	BC024719|Mlc1|170790|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	NM_133241|Mlc1|170790|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)
mm9_v1_chr18_+_37633193_37633199	5.82042	FOXP3.p2	BC066178|Pcdhb15|93886|protocadherin beta 15	AK038663|Pcdhb15|93886|protocadherin beta 15	NM_053140|Pcdhb15|93886|protocadherin beta 15
mm9_v1_chr4_-_120781830_120781830	5.79983	FOXP3.p2	AK006456|Tmco2|69469|transmembrane and coiled-coil domains 2	NM_001081312|Tmco2|69469|transmembrane and coiled-coil domains 2
mm9_v1_chr11_-_91438844_91438922	5.78921	FOXP3.p2	BC100484|Kif2b|73470|kinesin family member 2B	AK030188|Kif2b|73470|kinesin family member 2B	NM_028547|Kif2b|73470|kinesin family member 2B	BC132056|Kif2b|73470|kinesin family member 2B	BC137981|Kif2b|73470|kinesin family member 2B
mm9_v1_chr5_-_114541313_114541402	5.70862	FOXP3.p2	BC059878|Svop|68666|SV2 related protein	AK047655|Svop|68666|SV2 related protein	AK053833|Svop|68666|SV2 related protein	AK160770|Svop|68666|SV2 related protein	AK047764|Svop|68666|SV2 related protein	AK082744|Svop|68666|SV2 related protein	NM_026805|Svop|68666|SV2 related protein
mm9_v1_chr9_-_109986879_109987026	5.70442	FOXP3.p2	AK193613|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm9_v1_chr4_-_41454658_41454796	5.47304	FOXP3.p2	DQ873295|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene	DQ873296|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene	AK003742|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene	BC049629|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene	NM_028624|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene
mm9_v1_chr16_+_49913305_49913369	5.0572	FOXP3.p2	AK050387|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm9_v1_chr1_-_197002841_197002908	5.03954	FOXP3.p2	BC109344|Cr2|12902|complement receptor 2	BC109345|Cr2|12902|complement receptor 2	AK003072|Cr2|12902|complement receptor 2	NM_007758|Cr2|12902|complement receptor 2
mm9_v1_chr7_+_97529155_97529155	4.85002	FOXP3.p2	NM_001040086|Sytl2|83671|synaptotagmin-like 2
mm9_v1_chr9_+_34296315_34296391	4.73912	FOXP3.p2	NM_001190911|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	NM_001190912|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	NM_001190913|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	NM_001190914|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	NM_026324|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	AK013621|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	AY169782|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	AK034142|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	AK079332|Kirrel3|67703|kin of IRRE like 3 (Drosophila)
mm9_v1_chr18_+_23573908_23573935	4.54675	FOXP3.p2	NM_010087|Dtna|13527|dystrobrevin alpha	NM_207650|Dtna|13527|dystrobrevin alpha
mm9_v1_chr14_-_9142289_9142295	4.30504	FOXP3.p2	BC055107|Fam107a|268709|family with sequence similarity 107, member A	NM_183187|Fam107a|268709|family with sequence similarity 107, member A	AK165722|Fam107a|268709|family with sequence similarity 107, member A
mm9_v1_chr18_-_12978106_12978267	4.2775	FOXP3.p2	BC057194|Osbpl1a|64291|oxysterol binding protein-like 1A	AF394063|Osbpl1a|64291|oxysterol binding protein-like 1A	AK133806|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr3_-_126701367_126701380	4.08879	FOXP3.p2	AK032060|Ank2|109676|ankyrin 2, brain	NM_178655|Ank2|109676|ankyrin 2, brain
mm9_v1_chr7_-_25457058_25457068	4.07467	FOXP3.p2	BC048475|Tex101|56746|testis expressed gene 101	AB022914|Tex101|56746|testis expressed gene 101	AK005769|Tex101|56746|testis expressed gene 101	DQ222042|Tex101|56746|testis expressed gene 101	NM_019981|Tex101|56746|testis expressed gene 101
mm9_v1_chr1_+_132762353_132762436	3.94684	FOXP3.p2	AK007714|Faim3|69169|Fas apoptotic inhibitory molecule 3	AK155943|Faim3|69169|Fas apoptotic inhibitory molecule 3	NM_026976|Faim3|69169|Fas apoptotic inhibitory molecule 3	AK156523|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227385|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227386|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227387|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227388|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227389|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227390|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227391|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227392|Faim3|69169|Fas apoptotic inhibitory molecule 3	AY227393|Faim3|69169|Fas apoptotic inhibitory molecule 3
mm9_v1_chr8_-_54724277_54724418	3.77064	FOXP3.p2	BC024921|Neil3|234258|nei like 3 (E. coli)	AB072931|Neil3|234258|nei like 3 (E. coli)	AK031027|Neil3|234258|nei like 3 (E. coli)	BC034753|Neil3|234258|nei like 3 (E. coli)	NM_146208|Neil3|234258|nei like 3 (E. coli)
mm9_v1_chr18_+_59222034_59222186	3.31829	FOXP3.p2	NM_001167925|A730017C20Rik|225583|RIKEN cDNA A730017C20 gene	NM_173759|A730017C20Rik|225583|RIKEN cDNA A730017C20 gene	AK080452|A730017C20Rik|225583|RIKEN cDNA A730017C20 gene	AK048493|A730017C20Rik|225583|RIKEN cDNA A730017C20 gene	BC075669|A730017C20Rik|225583|RIKEN cDNA A730017C20 gene
mm9_v1_chr15_-_43002356_43002397	3.19886	FOXP3.p2	AK087485|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	NM_172815|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK052457|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK049891|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)
mm9_v1_chr7_-_30736911_30736911	3.18567	FOXP3.p2	BC050048|Zfp74|72723|zinc finger protein 74	NM_178384|Zfp74|72723|zinc finger protein 74
mm9_v1_chr1_-_178737254_178737254	3.07173	FOXP3.p2	NM_001099637|Cep170|545389|centrosomal protein 170
mm9_v1_chr17_-_40379205_40379215	3.0218	FOXP3.p2	BC132536|Crisp3|11572|cysteine-rich secretory protein 3	BC132538|Crisp3|11572|cysteine-rich secretory protein 3	L05560|Crisp3|11572|cysteine-rich secretory protein 3	NM_009639|Crisp3|11572|cysteine-rich secretory protein 3	BC114345|Crisp3|11572|cysteine-rich secretory protein 3	M92850|Crisp3|11572|cysteine-rich secretory protein 3	BC022573|Crisp3|11572|cysteine-rich secretory protein 3
mm9_v1_chr10_+_62849310_62849422	3.00803	FOXP3.p2	NM_013888|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	AK032207|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	AF132906|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	BC013501|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	BC071211|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12
mm9_v1_chr2_+_120802698_120802797	2.97434	FOXP3.p2	AK161890|Tmem62|96957|transmembrane protein 62	BC070410|Tmem62|96957|transmembrane protein 62	NM_175285|Tmem62|96957|transmembrane protein 62
mm9_v1_chr16_+_17331463_17331501	2.9183	FOXP3.p2	NM_008223|Serpind1|15160|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm9_v1_chr5_+_89012547_89012592	2.88889	FOXP3.p2	AK018184|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr2_+_148645816_148645857	2.85641	FOXP3.p2	AY600990|Cst13|69294|cystatin 13	BC048681|Cst13|69294|cystatin 13	NM_027024|Cst13|69294|cystatin 13	AK005665|Cst13|69294|cystatin 13
mm9_v1_chr14_-_122364309_122364416	2.81812	FOXP3.p2	BC052868|Gpr183|321019|G protein-coupled receptor 183	AK141593|Gpr183|321019|G protein-coupled receptor 183	AK153216|Gpr183|321019|G protein-coupled receptor 183	AK087951|Gpr183|321019|G protein-coupled receptor 183	AK156005|Gpr183|321019|G protein-coupled receptor 183	AK156289|Gpr183|321019|G protein-coupled receptor 183	NM_183031|Gpr183|321019|G protein-coupled receptor 183	AK138693|Gpr183|321019|G protein-coupled receptor 183
mm9_v1_chrX_+_6645338_6645368	2.70754	FOXP3.p2	NM_001042542|Akap4|11643|A kinase (PRKA) anchor protein 4	U07423|Akap4|11643|A kinase (PRKA) anchor protein 4
mm9_v1_chr6_-_119146426_119146446	2.69774	FOXP3.p2	AK052162|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit	NM_009781|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit
mm9_v1_chr2_+_120967876_120967876	2.4904	FOXP3.p2	BC050879|Adal|75894|adenosine deaminase-like	BC052048|Adal|75894|adenosine deaminase-like	NM_029475|Adal|75894|adenosine deaminase-like
mm9_v1_chr1_+_132762248_132762329	2.35634	FOXP3.p2	BC116674|Faim3|69169|Fas apoptotic inhibitory molecule 3	BC118505|Faim3|69169|Fas apoptotic inhibitory molecule 3
mm9_v1_chr14_-_54902599_54902599	2.31013	FOXP3.p2	BC145891|Olfr49|18348|olfactory receptor 49	BC145893|Olfr49|18348|olfactory receptor 49	NM_010991|Olfr49|18348|olfactory receptor 49
mm9_v1_chr1_-_38878059_38878110	2.28698	FOXP3.p2	NM_001029878|Lonrf2|381338|LON peptidase N-terminal domain and ring finger 2	BC139127|Lonrf2|381338|LON peptidase N-terminal domain and ring finger 2	BC139130|Lonrf2|381338|LON peptidase N-terminal domain and ring finger 2
mm9_v1_chr14_+_53070067_53070067	2.15119	FOXP3.p2	BC119195|Olfr1509|57271|olfactory receptor 1509	BC119199|Olfr1509|57271|olfactory receptor 1509	NM_020514|Olfr1509|57271|olfactory receptor 1509
mm9_v1_chr4_-_153531656_153531685	2.11512	FOXP3.p2	
mm9_v1_chr19_+_30307417_30307431	2.06039	FOXP3.p2	AK149484|Mbl2|17195|mannose-binding lectin (protein C) 2	S42294|Mbl2|17195|mannose-binding lectin (protein C) 2	BC010760|Mbl2|17195|mannose-binding lectin (protein C) 2
mm9_v1_chr16_+_17331507_17331521	1.97821	FOXP3.p2	BC089610|Serpind1|15160|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm9_v1_chr3_-_98663713_98663719	1.93999	FOXP3.p2	AK146665|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	AK147114|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	NM_008293|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1
mm9_v1_chr16_-_17144515_17144515	1.93839	FOXP3.p2	AK015290|Ccdc116|76872|coiled-coil domain containing 116	NM_029779|Ccdc116|76872|coiled-coil domain containing 116
mm9_v1_chr1_+_173180542_173180557	1.79785	FOXP3.p2	AK028364|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	AK083534|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	NM_172845|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	AK157287|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	AK164900|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4
mm9_v1_chr18_+_37560490_37560542	1.76236	FOXP3.p2	AK032626|Pcdhb9|93880|protocadherin beta 9	NM_053134|Pcdhb9|93880|protocadherin beta 9	BC055319|Pcdhb9|93880|protocadherin beta 9	BC062640|Pcdhb9|93880|protocadherin beta 9
mm9_v1_chr19_-_7877136_7877156	1.75781	FOXP3.p2	BC014805|BC014805|236149|cDNA sequence BC014805	NM_146232|BC014805|236149|cDNA sequence BC014805
mm9_v1_chrX_-_16488889_16488889	1.75423	FOXP3.p2	BC090623|Ndp|17986|Norrie disease (pseudoglioma) (human)	NM_010883|Ndp|17986|Norrie disease (pseudoglioma) (human)
mm9_v1_chr5_+_88408469_88408475	1.74617	FOXP3.p2	AK016441|4931407G18Rik|70977|RIKEN cDNA 4931407G18 gene	AK076636|4931407G18Rik|70977|RIKEN cDNA 4931407G18 gene	BC049750|4931407G18Rik|70977|RIKEN cDNA 4931407G18 gene	NM_027631|4931407G18Rik|70977|RIKEN cDNA 4931407G18 gene
mm9_v1_chrX_-_121249518_121249518	1.72479	FOXP3.p2	NM_001100616|Vmn2r121|100038941|vomeronasal 2, receptor 121
mm9_v1_chr13_+_55827167_55827225	1.65054	FOXP3.p2	AK209800|Txndc15|69672|thioredoxin domain containing 15	AK213704|Txndc15|69672|thioredoxin domain containing 15	AK206830|Txndc15|69672|thioredoxin domain containing 15
mm9_v1_chr18_-_15562126_15562266	1.60035	FOXP3.p2	AK044074|Aqp4|11829|aquaporin 4	BC024526|Aqp4|11829|aquaporin 4	NM_009700|Aqp4|11829|aquaporin 4	AF469168|Aqp4|11829|aquaporin 4
mm9_v1_chr14_-_55479326_55479326	1.55376	FOXP3.p2	BC094669|Homez|239099|homeodomain leucine zipper-encoding gene	NM_183174|Homez|239099|homeodomain leucine zipper-encoding gene
mm9_v1_chr4_-_91813911_91813924	1.54091	FOXP3.p2	BC099579|Izumo3|69314|IZUMO family member 3	NM_027034|Izumo3|69314|IZUMO family member 3	AK005867|Izumo3|69314|IZUMO family member 3
mm9_v1_chr4_-_14723198_14723206	1.51711	FOXP3.p2	AK161371|Lrrc69|73314|leucine rich repeat containing 69	NM_028499|Lrrc69|73314|leucine rich repeat containing 69	AK006601|Lrrc69|73314|leucine rich repeat containing 69
mm9_v1_chr18_+_37896589_37896589	1.49439	FOXP3.p2	BC079567|Pcdhga9|93717|protocadherin gamma subfamily A, 9	NM_033592|Pcdhga9|93717|protocadherin gamma subfamily A, 9
mm9_v1_chr9_-_106463955_106463961	1.45428	FOXP3.p2	AK016688|Iqcf3|68265|IQ motif containing F3	AK018835|Iqcf3|68265|IQ motif containing F3	BC049549|Iqcf3|68265|IQ motif containing F3	NM_026645|Iqcf3|68265|IQ motif containing F3	AK132739|Iqcf3|68265|IQ motif containing F3	DQ153247|Iqcf3|68265|IQ motif containing F3
mm9_v1_chr1_+_162917586_162917638	1.44578	FOXP3.p2	BC033377|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	AK050295|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chrX_-_136533089_136533133	1.44293	FOXP3.p2	BC037024|Rbm41|237073|RNA binding motif protein 41	AK077972|Rbm41|237073|RNA binding motif protein 41	NM_001172147|Rbm41|237073|RNA binding motif protein 41	NM_001172148|Rbm41|237073|RNA binding motif protein 41	NM_153586|Rbm41|237073|RNA binding motif protein 41
mm9_v1_chr16_-_31314534_31314685	1.41906	FOXP3.p2	X82648|Apod|11815|apolipoprotein D	AK158118|Apod|11815|apolipoprotein D	AK157925|Apod|11815|apolipoprotein D	AK135046|Apod|11815|apolipoprotein D	AK157917|Apod|11815|apolipoprotein D	AK160729|Apod|11815|apolipoprotein D	AK162392|Apod|11815|apolipoprotein D	NM_007470|Apod|11815|apolipoprotein D	AK158405|Apod|11815|apolipoprotein D
mm9_v1_chrX_-_75336699_75336712	1.41137	FOXP3.p2	BC125514|Obp1a|18249|odorant binding protein Ia	BC125516|Obp1a|18249|odorant binding protein Ia	AK017455|Obp1a|18249|odorant binding protein Ia	NM_008754|Obp1a|18249|odorant binding protein Ia
mm9_v1_chr1_-_52714729_52714742	1.39175	FOXP3.p2	BC016598|Mfsd6|98682|major facilitator superfamily domain containing 6
mm9_v1_chr15_-_71864639_71864656	1.3791	FOXP3.p2	NM_027174|Col22a1|69700|collagen, type XXII, alpha 1
mm9_v1_chr9_+_3335472_3335500	1.36819	FOXP3.p2	AK020197|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	AK054267|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	AK081459|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	AK133489|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	AK041810|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	AK033352|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)
mm9_v1_chr2_-_28321788_28321851	1.36682	FOXP3.p2	AY927869|1700007K13Rik|69327|RIKEN cDNA 1700007K13 gene	BC048581|1700007K13Rik|69327|RIKEN cDNA 1700007K13 gene	BC099566|1700007K13Rik|69327|RIKEN cDNA 1700007K13 gene	NM_027040|1700007K13Rik|69327|RIKEN cDNA 1700007K13 gene	AK005731|1700007K13Rik|69327|RIKEN cDNA 1700007K13 gene
mm9_v1_chr4_-_49562319_49562386	1.35598	FOXP3.p2	BC026577|Aldob|230163|aldolase B, fructose-bisphosphate	BC034172|Aldob|230163|aldolase B, fructose-bisphosphate	BC034173|Aldob|230163|aldolase B, fructose-bisphosphate	BC022113|Aldob|230163|aldolase B, fructose-bisphosphate	BC034171|Aldob|230163|aldolase B, fructose-bisphosphate	BC036130|Aldob|230163|aldolase B, fructose-bisphosphate	BC016435|Aldob|230163|aldolase B, fructose-bisphosphate	BC036131|Aldob|230163|aldolase B, fructose-bisphosphate	BC036132|Aldob|230163|aldolase B, fructose-bisphosphate	BC036133|Aldob|230163|aldolase B, fructose-bisphosphate	NM_144903|Aldob|230163|aldolase B, fructose-bisphosphate	BC030724|Aldob|230163|aldolase B, fructose-bisphosphate	BC024112|Aldob|230163|aldolase B, fructose-bisphosphate	BC024056|Aldob|230163|aldolase B, fructose-bisphosphate	BC030725|Aldob|230163|aldolase B, fructose-bisphosphate	BC034169|Aldob|230163|aldolase B, fructose-bisphosphate	AK149598|Aldob|230163|aldolase B, fructose-bisphosphate	AK167566|Aldob|230163|aldolase B, fructose-bisphosphate	AK168600|Aldob|230163|aldolase B, fructose-bisphosphate	AK149395|Aldob|230163|aldolase B, fructose-bisphosphate	AK167334|Aldob|230163|aldolase B, fructose-bisphosphate	AK135385|Aldob|230163|aldolase B, fructose-bisphosphate
mm9_v1_chr6_-_38077491_38077509	1.34509	FOXP3.p2	BC059853|D630045J12Rik|330286|RIKEN cDNA D630045J12 gene	BC042666|D630045J12Rik|330286|RIKEN cDNA D630045J12 gene
mm9_v1_chr3_-_15748418_15748511	1.34285	FOXP3.p2	AK036935|Sirpb1a|320832|signal-regulatory protein beta 1A	DQ055453|LOC100038947|100038947|signal-regulatory protein beta 1-like	NM_001173459|LOC100038947|100038947|signal-regulatory protein beta 1-like	AB112023|Sirpb1a|320832|signal-regulatory protein beta 1A	AK170671|Sirpb1a|320832|signal-regulatory protein beta 1A	AK054545|Sirpb1a|320832|signal-regulatory protein beta 1A	BC145417|Sirpb1a|320832|signal-regulatory protein beta 1A	BC145418|Sirpb1a|320832|signal-regulatory protein beta 1A	AB112024|Sirpb1a|320832|signal-regulatory protein beta 1A	AK040982|Sirpb1a|320832|signal-regulatory protein beta 1A	AK155731|Sirpb1a|320832|signal-regulatory protein beta 1A	AK041165|Sirpb1a|320832|signal-regulatory protein beta 1A	AB109404|Sirpb1a|320832|signal-regulatory protein beta 1A
mm9_v1_chr1_-_175872522_175872802	1.30135	FOXP3.p2	AF022371|Ifi203|15950|interferon activated gene 203	BC008167|Ifi203|15950|interferon activated gene 203	AK164695|Ifi203|15950|interferon activated gene 203	AK161531|Ifi203|15950|interferon activated gene 203	NM_008328|Ifi203|15950|interferon activated gene 203	AK041232|Ifi203|15950|interferon activated gene 203	AK169754|Ifi203|15950|interferon activated gene 203	AK137616|Ifi203|15950|interferon activated gene 203	AK040214|Ifi203|15950|interferon activated gene 203	NM_001045481|Ifi203|15950|interferon activated gene 203	AK144663|Ifi203|15950|interferon activated gene 203
mm9_v1_chr8_+_97835414_97835512	1.30125	FOXP3.p2	NM_199455|Tepp|73407|testis, prostate and placenta expressed	BC104382|Tepp|73407|testis, prostate and placenta expressed	BC104383|Tepp|73407|testis, prostate and placenta expressed	BC087870|Tepp|73407|testis, prostate and placenta expressed	AK006802|Tepp|73407|testis, prostate and placenta expressed	NM_028532|Tepp|73407|testis, prostate and placenta expressed
mm9_v1_chr19_+_8667671_8667730	1.29936	FOXP3.p2	NM_001164635|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	AK157891|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	BC014762|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	AK044336|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	AF078869|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8
mm9_v1_chr3_+_84668066_84668066	1.29086	FOXP3.p2	BC066093|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177774|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr13_+_43497279_43497424	1.2785	FOXP3.p2	AK140839|Nol7|70078|nucleolar protein 7
mm9_v1_chr7_+_69493148_69493265	1.24946	FOXP3.p2	NM_010882|Ndn|17984|necdin	BC147249|Ndn|17984|necdin	BC147250|Ndn|17984|necdin	AK005078|Ndn|17984|necdin	AK075729|Ndn|17984|necdin	AK076025|Ndn|17984|necdin	AK078129|Ndn|17984|necdin	AK135444|Ndn|17984|necdin	AK149086|Ndn|17984|necdin	AK075735|Ndn|17984|necdin	M80840|Ndn|17984|necdin
mm9_v1_chr7_-_13007839_13007937	1.23204	FOXP3.p2	AK137311|Zfp551|619331|zinc fingr protein 551	NM_001033820|Zfp551|619331|zinc fingr protein 551	BC141160|Zfp551|619331|zinc fingr protein 551	BC145466|Zfp551|619331|zinc fingr protein 551
mm9_v1_chrX_+_109207104_109207128	1.22797	FOXP3.p2	BC132332|Tex16|83556|testis expressed gene 16	AF285573|Tex16|83556|testis expressed gene 16	NM_031382|Tex16|83556|testis expressed gene 16
mm9_v1_chr17_-_53602610_53602645	1.21098	FOXP3.p2	AK167235|Efhb|211482|EF hand domain family, member B	BC132103|Efhb|211482|EF hand domain family, member B	BC137880|Efhb|211482|EF hand domain family, member B	AK029550|Efhb|211482|EF hand domain family, member B	NM_172497|Efhb|211482|EF hand domain family, member B
mm9_v1_chr17_+_48386894_48386971	1.19935	FOXP3.p2	AF241220|Trem3|58218|triggering receptor expressed on myeloid cells 3	NM_021407|Trem3|58218|triggering receptor expressed on myeloid cells 3	BC127035|Trem3|58218|triggering receptor expressed on myeloid cells 3	BC127036|Trem3|58218|triggering receptor expressed on myeloid cells 3	AK079407|Trem3|58218|triggering receptor expressed on myeloid cells 3
mm9_v1_chrX_+_75370805_75370805	1.19472	FOXP3.p2	NM_001085534|Gm5938|546335|predicted gene 5938
mm9_v1_chr19_+_39585311_39585360	1.18022	FOXP3.p2	BC139290|Cyp2c39|13098|cytochrome P450, family 2, subfamily c, polypeptide 39	BC139291|Cyp2c39|13098|cytochrome P450, family 2, subfamily c, polypeptide 39	NM_010003|Cyp2c39|13098|cytochrome P450, family 2, subfamily c, polypeptide 39	BC057911|Cyp2c39|13098|cytochrome P450, family 2, subfamily c, polypeptide 39	AF047726|Cyp2c39|13098|cytochrome P450, family 2, subfamily c, polypeptide 39
mm9_v1_chr1_+_87804349_87804399	1.17415	FOXP3.p2	AK206485|Itm2c|64294|integral membrane protein 2C	AK207473|Itm2c|64294|integral membrane protein 2C	AK218160|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr4_+_155384263_155384331	1.16869	FOXP3.p2	AK087335|Sdf4|20318|stromal cell derived factor 4
mm9_v1_chr4_-_36665923_36665995	1.15102	FOXP3.p2	BC090619|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_001166000|Lingo2|242384|leucine rich repeat and Ig domain containing 2
mm9_v1_chr16_-_52268571_52268603	1.13884	FOXP3.p2	AK161090|Alcam|11658|activated leukocyte cell adhesion molecule
mm9_v1_chr4_+_115273542_115273542	1.12254	FOXP3.p2	NM_001100181|Cyp4a32|100040843|cytochrome P450, family 4, subfamily a, polypeptide 32
mm9_v1_chr10_+_117641997_117642023	1.12118	FOXP3.p2	AJ249491|Il22|50929|interleukin 22	BC104348|Il22|50929|interleukin 22	BC104349|Il22|50929|interleukin 22	NM_016971|Il22|50929|interleukin 22	BC116235|Il22|50929|interleukin 22
mm9_v1_chr8_-_108503199_108503328	1.1108	FOXP3.p2	AF488553|Dpep3|71854|dipeptidase 3	AK006085|Dpep3|71854|dipeptidase 3	NM_027960|Dpep3|71854|dipeptidase 3	BC051148|Dpep3|71854|dipeptidase 3
mm9_v1_chr19_-_11340591_11340730	1.11032	FOXP3.p2	AK171638|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK080040|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	BC028322|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK171659|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK137469|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK143824|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK041428|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK080148|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK156033|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK017903|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	NM_007641|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK171631|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK166571|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK166659|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1
mm9_v1_chr12_+_34079718_34079950	1.1008	FOXP3.p2	AK015697|Efcab10|75040|EF-hand calcium binding domain 10	BC099564|Efcab10|75040|EF-hand calcium binding domain 10	NM_029152|Efcab10|75040|EF-hand calcium binding domain 10	BC119387|Efcab10|75040|EF-hand calcium binding domain 10	BC120662|Efcab10|75040|EF-hand calcium binding domain 10
mm9_v1_chrX_-_136533042_136533082	1.09797	FOXP3.p2	AK163147|Rbm41|237073|RNA binding motif protein 41	AK084514|Rbm41|237073|RNA binding motif protein 41	AK084629|Rbm41|237073|RNA binding motif protein 41	AK141075|Rbm41|237073|RNA binding motif protein 41	AK166005|Rbm41|237073|RNA binding motif protein 41	AK040213|Rbm41|237073|RNA binding motif protein 41	AK164496|Rbm41|237073|RNA binding motif protein 41	AK166229|Rbm41|237073|RNA binding motif protein 41
mm9_v1_chrX_-_98459313_98459330	1.09684	FOXP3.p2	BC048573|Gm614|245536|predicted gene 614	BC147523|Gm614|245536|predicted gene 614	BC147537|Gm614|245536|predicted gene 614	AK131750|Gm614|245536|predicted gene 614	NM_001033362|Gm614|245536|predicted gene 614
mm9_v1_chr1_+_75396650_75396733	1.08434	FOXP3.p2	NM_001173477|Speg|11790|SPEG complex locus
mm9_v1_chrX_+_8860889_8860889	1.07492	FOXP3.p2	AK005922|1700012L04Rik|76383|RIKEN cDNA 1700012L04 gene	NM_029588|1700012L04Rik|76383|RIKEN cDNA 1700012L04 gene
mm9_v1_chr1_-_163089444_163089444	1.06355	FOXP3.p2	AK015528|4930469G21Rik|74933|RIKEN cDNA 4930469G21 gene	NM_001195189|4930469G21Rik|74933|RIKEN cDNA 4930469G21 gene
mm9_v1_chr9_-_44817429_44817729	1.06341	FOXP3.p2	EF474454|Cd3e|12501|CD3 antigen, epsilon polypeptide	GU456631|Cd3e|12501|CD3 antigen, epsilon polypeptide	BC098236|Cd3e|12501|CD3 antigen, epsilon polypeptide	BC028636|Cd3e|12501|CD3 antigen, epsilon polypeptide	BC145926|Cd3e|12501|CD3 antigen, epsilon polypeptide	BC145954|Cd3e|12501|CD3 antigen, epsilon polypeptide	J02990|Cd3e|12501|CD3 antigen, epsilon polypeptide	NM_007648|Cd3e|12501|CD3 antigen, epsilon polypeptide	AK041607|Cd3e|12501|CD3 antigen, epsilon polypeptide
mm9_v1_chr5_+_34974750_34974884	1.04791	FOXP3.p2	
mm9_v1_chr19_+_30307446_30307456	1.03442	FOXP3.p2	D11440|Mbl2|17195|mannose-binding lectin (protein C) 2	NM_010776|Mbl2|17195|mannose-binding lectin (protein C) 2
mm9_v1_chr4_+_125701902_125702025	1.02858	FOXP3.p2	AK144318|Csf3r|12986|colony stimulating factor 3 receptor (granulocyte)	NM_007782|Csf3r|12986|colony stimulating factor 3 receptor (granulocyte)	AK089305|Csf3r|12986|colony stimulating factor 3 receptor (granulocyte)	M58288|Csf3r|12986|colony stimulating factor 3 receptor (granulocyte)	BC115865|Csf3r|12986|colony stimulating factor 3 receptor (granulocyte)	BC116635|Csf3r|12986|colony stimulating factor 3 receptor (granulocyte)
mm9_v1_chr17_+_19190456_19190456	0.990141	FOXP3.p2	NM_001104550|Vmn2r98|224552|vomeronasal 2, receptor 98
mm9_v1_chr14_-_66696533_66696571	0.980425	FOXP3.p2	AK161261|Adam2|11495|a disintegrin and metallopeptidase domain 2	AK161266|Adam2|11495|a disintegrin and metallopeptidase domain 2	U16242|Adam2|11495|a disintegrin and metallopeptidase domain 2	AK016550|Adam2|11495|a disintegrin and metallopeptidase domain 2	NM_009618|Adam2|11495|a disintegrin and metallopeptidase domain 2	U38806|Adam2|11495|a disintegrin and metallopeptidase domain 2
mm9_v1_chr8_-_55606109_55606134	0.965509	FOXP3.p2	AK051731|Spcs3|76687|signal peptidase complex subunit 3 homolog (S. cerevisiae)
mm9_v1_chr1_+_179375951_179375951	0.961937	FOXP3.p2	AF140224|Zfp238|30928|zinc finger protein 238	NM_013915|Zfp238|30928|zinc finger protein 238
mm9_v1_chr16_+_23058492_23058504	0.956409	FOXP3.p2	AY462058|Kng1|16644|kininogen 1	D84415|Kng1|16644|kininogen 1	D84435|Kng1|16644|kininogen 1
mm9_v1_chr4_-_49562400_49562417	0.951794	FOXP3.p2	AK168997|Aldob|230163|aldolase B, fructose-bisphosphate
mm9_v1_chr19_+_8913817_8913862	0.951301	FOXP3.p2	AK158901|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	NM_008144|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	BC060048|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm9_v1_chr7_-_148068161_148068207	0.943951	FOXP3.p2	AF299338|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	NM_022433|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)
mm9_v1_chr19_+_8913965_8913992	0.928752	FOXP3.p2	AF069954|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm9_v1_chr2_-_155479292_155479385	0.926542	FOXP3.p2	BC003931|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein
mm9_v1_chr12_+_72149332_72149349	0.921673	FOXP3.p2	AK149171|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)
mm9_v1_chrX_+_10885885_10885885	0.920024	FOXP3.p2	BC087913|Gm14483|100042922|predicted gene 14483	NM_001111037|Gm14483|100042922|predicted gene 14483
mm9_v1_chr16_+_45224449_45224465	0.914112	FOXP3.p2	AK041334|Btla|208154|B and T lymphocyte associated	BC108963|Btla|208154|B and T lymphocyte associated	BC108964|Btla|208154|B and T lymphocyte associated	NM_001037719|Btla|208154|B and T lymphocyte associated	NM_177584|Btla|208154|B and T lymphocyte associated	AY293285|Btla|208154|B and T lymphocyte associated
mm9_v1_chr10_+_98478207_98478246	0.910654	FOXP3.p2	BC025199|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chr1_-_179178874_179178897	0.903831	FOXP3.p2	AF124142|Akt3|23797|thymoma viral proto-oncogene 3	BC066861|Akt3|23797|thymoma viral proto-oncogene 3	NM_011785|Akt3|23797|thymoma viral proto-oncogene 3
mm9_v1_chr1_+_162917640_162917674	0.877589	FOXP3.p2	BC011165|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	S47225|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chrX_+_98877684_98877720	0.873761	FOXP3.p2	AK041765|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
mm9_v1_chrX_-_9149516_9149516	0.868419	FOXP3.p2	NM_001085517|Gm5132|333452|predicted gene 5132
mm9_v1_chr6_-_40535762_40535819	0.859174	FOXP3.p2	BC104364|Clec5a|23845|C-type lectin domain family 5, member a	BC104365|Clec5a|23845|C-type lectin domain family 5, member a	AK036697|Clec5a|23845|C-type lectin domain family 5, member a	AF139769|Clec5a|23845|C-type lectin domain family 5, member a	AK046600|Clec5a|23845|C-type lectin domain family 5, member a	AK137482|Clec5a|23845|C-type lectin domain family 5, member a	NM_001038604|Clec5a|23845|C-type lectin domain family 5, member a	NM_021364|Clec5a|23845|C-type lectin domain family 5, member a	AK155409|Clec5a|23845|C-type lectin domain family 5, member a
mm9_v1_chr17_-_42829185_42829232	0.854167	FOXP3.p2	BC140980|Gpr115|78249|G protein-coupled receptor 115	AK019508|Gpr115|78249|G protein-coupled receptor 115	BC089564|Gpr115|78249|G protein-coupled receptor 115	NM_030067|Gpr115|78249|G protein-coupled receptor 115
mm9_v1_chr5_-_87683812_87683841	0.84364	FOXP3.p2	BC019487|Ugt2b37|112417|UDP glucuronosyltransferase 2 family, polypeptide B37	NM_053215|Ugt2b37|112417|UDP glucuronosyltransferase 2 family, polypeptide B37	AK002736|Ugt2b37|112417|UDP glucuronosyltransferase 2 family, polypeptide B37
mm9_v1_chr4_+_126800830_126800906	0.829272	FOXP3.p2	BC060297|Zmym6|100177|zinc finger, MYM-type 6
mm9_v1_chrX_+_10889059_10889059	0.828348	FOXP3.p2	BC049545|Gm14484|547160|predicted gene 14484	NM_001025260|Gm14484|547160|predicted gene 14484
mm9_v1_chrX_-_105011493_105011672	0.812588	FOXP3.p2	AK019383|2610002M06Rik|67028|RIKEN cDNA 2610002M06 gene	BC016070|2610002M06Rik|67028|RIKEN cDNA 2610002M06 gene	AK011297|2610002M06Rik|67028|RIKEN cDNA 2610002M06 gene	NM_025921|2610002M06Rik|67028|RIKEN cDNA 2610002M06 gene
mm9_v1_chr7_-_28317608_28317617	0.799297	FOXP3.p2	AK182880|Pld3|18807|phospholipase D family, member 3
mm9_v1_chr19_-_7877065_7877081	0.786402	FOXP3.p2	AJ132857|BC014805|236149|cDNA sequence BC014805
mm9_v1_chr13_-_77230519_77230547	0.773247	FOXP3.p2	BC083095|Ankrd32|105377|ankyrin repeat domain 32
mm9_v1_chr9_+_106724228_106724306	0.772306	FOXP3.p2	BC065119|Vprbp|321006|Vpr (HIV-1) binding protein	NM_001015507|Vprbp|321006|Vpr (HIV-1) binding protein
mm9_v1_chr2_+_78710638_78710757	0.763804	FOXP3.p2	AF003346|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)
mm9_v1_chr6_+_48626133_48626222	0.757492	FOXP3.p2	NM_174960|Gimap9|317758|GTPase, IMAP family member 9	AK041336|Gimap9|317758|GTPase, IMAP family member 9	BC096680|Gimap9|317758|GTPase, IMAP family member 9	BC038043|Gimap9|317758|GTPase, IMAP family member 9
mm9_v1_chr9_+_45238375_45238483	0.74971	FOXP3.p2	NM_001081270|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AK147531|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AF487345|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AF487347|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1
mm9_v1_chrX_-_34650263_34650340	0.746234	FOXP3.p2	AK019989|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC058761|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK162222|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK011606|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK145431|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	NM_026573|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC117769|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC117770|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)
mm9_v1_chr14_+_119187092_119187139	0.728136	FOXP3.p2	NM_001160096|Cldn10|58187|claudin 10	NM_001160097|Cldn10|58187|claudin 10	NM_001160098|Cldn10|58187|claudin 10	NM_023878|Cldn10|58187|claudin 10	AK020131|Cldn10|58187|claudin 10	BC021770|Cldn10|58187|claudin 10
mm9_v1_chr16_+_23058457_23058465	0.727605	FOXP3.p2	AY660571|Kng1|16644|kininogen 1
mm9_v1_chr9_+_3335139_3335230	0.7248	FOXP3.p2	AK160783|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	BC050863|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	NM_026303|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)
mm9_v1_chr1_-_136443526_136443598	0.715592	FOXP3.p2	BC145149|4931440L10Rik|71001|RIKEN cDNA 4931440L10 gene	BC145786|4931440L10Rik|71001|RIKEN cDNA 4931440L10 gene	NM_001145300|4931440L10Rik|71001|RIKEN cDNA 4931440L10 gene
mm9_v1_chr17_+_85427686_85427744	0.711498	FOXP3.p2	NM_009205|Slc3a1|20532|solute carrier family 3, member 1	AB009290|Slc3a1|20532|solute carrier family 3, member 1	AK052623|Slc3a1|20532|solute carrier family 3, member 1	AK132275|Slc3a1|20532|solute carrier family 3, member 1	D88533|Slc3a1|20532|solute carrier family 3, member 1	BC013441|Slc3a1|20532|solute carrier family 3, member 1
mm9_v1_chr6_+_18816317_18816373	0.709894	FOXP3.p2	BC049731|Ankrd7|75196|ankyrin repeat domain 7	NM_001167757|Ankrd7|75196|ankyrin repeat domain 7	NM_029202|Ankrd7|75196|ankyrin repeat domain 7	AK077080|Ankrd7|75196|ankyrin repeat domain 7	AK015948|Ankrd7|75196|ankyrin repeat domain 7
mm9_v1_chr6_-_129457171_129457184	0.709809	FOXP3.p2	AF303744|Olr1|108078|oxidized low density lipoprotein (lectin-like) receptor 1	AK154687|Olr1|108078|oxidized low density lipoprotein (lectin-like) receptor 1	AK160919|Olr1|108078|oxidized low density lipoprotein (lectin-like) receptor 1	NM_138648|Olr1|108078|oxidized low density lipoprotein (lectin-like) receptor 1
mm9_v1_chr5_+_20930720_20930881	0.709095	FOXP3.p2	NM_177869|Fam185a|330050|family with sequence similarity 185, member A	AK030922|Fam185a|330050|family with sequence similarity 185, member A	AK076256|Fam185a|330050|family with sequence similarity 185, member A	BC055342|Fam185a|330050|family with sequence similarity 185, member A
mm9_v1_chr12_+_105350933_105350933	0.697138	FOXP3.p2	AK016702|Serpina3a|74069|serine (or cysteine) peptidase inhibitor, clade A, member 3A	BC063325|Serpina3a|74069|serine (or cysteine) peptidase inhibitor, clade A, member 3A	NM_001167705|Serpina3a|74069|serine (or cysteine) peptidase inhibitor, clade A, member 3A
mm9_v1_chr1_+_175603760_175603841	0.689185	FOXP3.p2	AK041099|Pydc3|100033459|pyrin domain containing 3	NM_001162938|Pydc3|100033459|pyrin domain containing 3
mm9_v1_chr17_+_19051285_19051285	0.684149	FOXP3.p2	NM_001104549|Vmn2r97|627367|vomeronasal 2, receptor 97
mm9_v1_chr6_-_34126949_34127110	0.670168	FOXP3.p2	AK042150|Slc35b4|58246|solute carrier family 35, member B4	AK029046|Slc35b4|58246|solute carrier family 35, member B4	BC033512|Slc35b4|58246|solute carrier family 35, member B4	AK033913|Slc35b4|58246|solute carrier family 35, member B4	BC016275|Slc35b4|58246|solute carrier family 35, member B4	AK045791|Slc35b4|58246|solute carrier family 35, member B4	AK138591|Slc35b4|58246|solute carrier family 35, member B4	AB041549|Slc35b4|58246|solute carrier family 35, member B4	NM_021435|Slc35b4|58246|solute carrier family 35, member B4	AK029969|Slc35b4|58246|solute carrier family 35, member B4
mm9_v1_chr17_-_18414529_18414529	0.660716	FOXP3.p2	NM_001104543|Vmn2r94|665227|vomeronasal 2, receptor 94
mm9_v1_chr14_+_33647147_33647147	0.651664	FOXP3.p2	NM_001164485|Fam170b|105511|family with sequence similarity 170, member B
mm9_v1_chrX_+_104479684_104479684	0.637239	FOXP3.p2	NM_001177782|Gpr174|213439|G protein-coupled receptor 174
mm9_v1_chr1_-_99024782_99024879	0.629985	FOXP3.p2	BC139066|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	BC139067|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK132668|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK161249|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK016647|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK029505|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	NM_028942|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1
mm9_v1_chr18_+_37678006_37678134	0.620389	FOXP3.p2	AK043492|Pcdhb22|93893|protocadherin beta 22	NM_053147|Pcdhb22|93893|protocadherin beta 22	BC094239|Pcdhb22|93893|protocadherin beta 22	AF326315|Pcdhb22|93893|protocadherin beta 22	AY013784|Pcdhb22|93893|protocadherin beta 22
mm9_v1_chr5_-_31950177_31950254	0.614973	FOXP3.p2	AK214115|Rbks|71336|ribokinase
mm9_v1_chr16_-_89488129_89488198	0.581804	FOXP3.p2	D86423|Krtap8-1|16703|keratin associated protein 8-1	AK133727|Krtap8-1|16703|keratin associated protein 8-1	NM_010675|Krtap8-1|16703|keratin associated protein 8-1
mm9_v1_chr3_-_141645214_141645214	0.581525	FOXP3.p2	BC065143|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B	NM_007560|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B
mm9_v1_chr8_+_123209286_123209298	0.568966	FOXP3.p2	
mm9_v1_chr16_-_23029154_23029175	0.559165	FOXP3.p2	NM_001102409|Kng2|385643|kininogen 2	NM_001102410|Kng2|385643|kininogen 2	NM_201375|Kng2|385643|kininogen 2
mm9_v1_chr1_+_173847645_173847838	0.551072	FOXP3.p2	AF248636|Slamf6|30925|SLAM family member 6	AF248635|Slamf6|30925|SLAM family member 6	NM_030710|Slamf6|30925|SLAM family member 6	BC030031|Slamf6|30925|SLAM family member 6	AB196808|Slamf6|30925|SLAM family member 6	AB196809|Slamf6|30925|SLAM family member 6	AB196810|Slamf6|30925|SLAM family member 6	AB196811|Slamf6|30925|SLAM family member 6	AB196836|Slamf6|30925|SLAM family member 6	EU591721|Slamf6|30925|SLAM family member 6
mm9_v1_chr2_-_58177217_58177217	0.551019	FOXP3.p2	AK049089|Acvr1c|269275|activin A receptor, type IC	NM_001033369|Acvr1c|269275|activin A receptor, type IC
mm9_v1_chr6_-_57340560_57340659	0.508796	FOXP3.p2	NM_134181|Vmn1r18|171199|vomeronasal 1 receptor 18	BC132061|Vmn1r18|171199|vomeronasal 1 receptor 18	BC138409|Vmn1r18|171199|vomeronasal 1 receptor 18
mm9_v1_chr4_-_154041819_154041975	0.498488	FOXP3.p2	AK006772|Actrt2|73353|actin-related protein T2	BC052344|Actrt2|73353|actin-related protein T2	AK077010|Actrt2|73353|actin-related protein T2	NM_028513|Actrt2|73353|actin-related protein T2
mm9_v1_chr19_+_8914035_8914053	0.495186	FOXP3.p2	BC043023|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm9_v1_chr1_+_31279683_31279691	0.486694	FOXP3.p2	AK015858|4930521A18Rik|74708|RIKEN cDNA 4930521A18 gene	NM_029062|4930521A18Rik|74708|RIKEN cDNA 4930521A18 gene	BC107262|4930521A18Rik|74708|RIKEN cDNA 4930521A18 gene
mm9_v1_chrX_-_146875621_146875705	0.476133	FOXP3.p2	BC058428|Tmem29|382245|transmembrane protein 29	AK018228|Tmem29|382245|transmembrane protein 29	NM_001164684|Tmem29|382245|transmembrane protein 29	AK165152|Tmem29|382245|transmembrane protein 29
mm9_v1_chr13_-_64190493_64190508	0.47148	FOXP3.p2	U66827|Hsd17b3|15487|hydroxysteroid (17-beta) dehydrogenase 3	NM_008291|Hsd17b3|15487|hydroxysteroid (17-beta) dehydrogenase 3
mm9_v1_chr2_+_92061718_92061757	0.456638	FOXP3.p2	NM_001109690|Phf21a|192285|PHD finger protein 21A	AK137085|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr2_+_136357921_136358056	0.452328	FOXP3.p2	AK029804|Ankrd5|319196|ankyrin repeat domain 5	BC089504|Ankrd5|319196|ankyrin repeat domain 5	BC120825|Ankrd5|319196|ankyrin repeat domain 5	BC144833|Ankrd5|319196|ankyrin repeat domain 5	NM_175667|Ankrd5|319196|ankyrin repeat domain 5
mm9_v1_chrX_-_135619753_135619783	0.450509	FOXP3.p2	AK149459|Serpina7|331535|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	AK050361|Serpina7|331535|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	NM_177920|Serpina7|331535|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
mm9_v1_chr11_-_62190182_62190262	0.436869	FOXP3.p2	AB093281|Ncor1|20185|nuclear receptor co-repressor 1
mm9_v1_chr13_+_120251565_120251614	0.43416	FOXP3.p2	AK008565|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	NM_001113550|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	NM_026127|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK008588|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK149119|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK020163|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK146515|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK014735|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	BC021327|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK017802|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK160863|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK008746|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	BC028328|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK215837|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene
mm9_v1_chrX_+_148613496_148613589	0.433148	FOXP3.p2	AK155453|Iqsec2|245666|IQ motif and Sec7 domain 2	NM_001005475|Iqsec2|245666|IQ motif and Sec7 domain 2
mm9_v1_chrX_+_13788273_13788273	0.429536	FOXP3.p2	BC100482|Gm5382|385328|predicted gene 5382	NM_001034100|Gm5382|385328|predicted gene 5382
mm9_v1_chr4_-_94595442_94595518	0.424013	FOXP3.p2	AB438105|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	AB438106|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	AK006446|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	DQ336137|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	AK016313|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	BC089517|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	NM_027089|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	AK016738|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	EU828781|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	EU828782|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene
mm9_v1_chrX_-_151384047_151384111	0.410301	FOXP3.p2	AY438669|Magea3|17139|melanoma antigen, family A, 3	BC119064|Magea3|17139|melanoma antigen, family A, 3	BC119066|Magea3|17139|melanoma antigen, family A, 3	NM_020017|Magea3|17139|melanoma antigen, family A, 3
mm9_v1_chr16_-_23029138_23029145	0.409991	FOXP3.p2	BC108335|Kng2|385643|kininogen 2
mm9_v1_chr9_-_109306800_109306809	0.401681	FOXP3.p2	BC084593|Fbxw22|382156|F-box and WD-40 domain protein 22	AK135808|Fbxw22|382156|F-box and WD-40 domain protein 22	NM_001014395|Fbxw22|382156|F-box and WD-40 domain protein 22
mm9_v1_chr17_-_37706393_37706395	0.383431	FOXP3.p2	AK029968|Olfr112|258096|olfactory receptor 112	NM_001013575|Olfr112|258096|olfactory receptor 112	AK016338|Olfr112|258096|olfactory receptor 112
mm9_v1_chr10_-_114622068_114622080	0.376131	FOXP3.p2	BC120514|Tph2|216343|tryptophan hydroxylase 2	BC125430|Tph2|216343|tryptophan hydroxylase 2	AY090565|Tph2|216343|tryptophan hydroxylase 2	NM_173391|Tph2|216343|tryptophan hydroxylase 2
mm9_v1_chr4_-_116300533_116300555	0.367617	FOXP3.p2	AK132690|Nasp|50927|nuclear autoantigenic sperm protein (histone-binding)	AK161367|Nasp|50927|nuclear autoantigenic sperm protein (histone-binding)	AF034610|Nasp|50927|nuclear autoantigenic sperm protein (histone-binding)	NM_016777|Nasp|50927|nuclear autoantigenic sperm protein (histone-binding)
mm9_v1_chr17_+_48594225_48594270	0.366456	FOXP3.p2	AK144925|Unc5cl|76589|unc-5 homolog C (C. elegans)-like	NM_152823|Unc5cl|76589|unc-5 homolog C (C. elegans)-like	BC095959|Unc5cl|76589|unc-5 homolog C (C. elegans)-like
mm9_v1_chr13_-_56649852_56649876	0.365066	FOXP3.p2	BC027753|Lect2|16841|leukocyte cell-derived chemotaxin 2	AB009687|Lect2|16841|leukocyte cell-derived chemotaxin 2
mm9_v1_chr4_-_151665770_151665770	0.357575	FOXP3.p2	AK090218|Hes3|15207|hairy and enhancer of split 3 (Drosophila)	NM_008237|Hes3|15207|hairy and enhancer of split 3 (Drosophila)
mm9_v1_chr12_+_105452740_105452842	0.351754	FOXP3.p2	BC119537|Serpina3g|20715|serine (or cysteine) peptidase inhibitor, clade A, member 3G	AK149697|Serpina3f|238393|serine (or cysteine) peptidase inhibitor, clade A, member 3F	AK150157|Serpina3f|238393|serine (or cysteine) peptidase inhibitor, clade A, member 3F	AK156086|Serpina3h|546546|serine (or cysteine) peptidase inhibitor, clade A, member 3H	BC132647|Serpina3h|546546|serine (or cysteine) peptidase inhibitor, clade A, member 3H	BC132649|Serpina3h|546546|serine (or cysteine) peptidase inhibitor, clade A, member 3H	NM_001168294|Serpina3f|238393|serine (or cysteine) peptidase inhibitor, clade A, member 3F	NM_001168295|Serpina3f|238393|serine (or cysteine) peptidase inhibitor, clade A, member 3F	NM_009251|Serpina3g|20715|serine (or cysteine) peptidase inhibitor, clade A, member 3G	AK156462|Serpina3g|20715|serine (or cysteine) peptidase inhibitor, clade A, member 3G	BC049975|Serpina3f|238393|serine (or cysteine) peptidase inhibitor, clade A, member 3F	AK138954|Serpina3f|238393|serine (or cysteine) peptidase inhibitor, clade A, member 3F	NM_001033335|Serpina3f|238393|serine (or cysteine) peptidase inhibitor, clade A, member 3F
mm9_v1_chr8_-_108092197_108092197	0.335824	FOXP3.p2	BC079902|Agrp|11604|agouti related protein	NM_007427|Agrp|11604|agouti related protein
mm9_v1_chr5_-_145908992_145909289	0.33535	FOXP3.p2	AK216509|Ptcd1|71799|pentatricopeptide repeat domain 1	AK213622|Ptcd1|71799|pentatricopeptide repeat domain 1	AK004421|Ptcd1|71799|pentatricopeptide repeat domain 1	AK218479|Ptcd1|71799|pentatricopeptide repeat domain 1	AK166306|Ptcd1|71799|pentatricopeptide repeat domain 1
mm9_v1_chr6_+_5340417_5340708	0.33509	FOXP3.p2	AK132068|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK018373|Asb4|65255|ankyrin repeat and SOCS box-containing 4	BC054745|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK076004|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AF155355|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK133894|Asb4|65255|ankyrin repeat and SOCS box-containing 4
mm9_v1_chr1_-_65169708_65169766	0.323784	FOXP3.p2	AK164708|D630023F18Rik|98303|RIKEN cDNA D630023F18 gene	BC137870|D630023F18Rik|98303|RIKEN cDNA D630023F18 gene	AK085417|D630023F18Rik|98303|RIKEN cDNA D630023F18 gene	NM_175293|D630023F18Rik|98303|RIKEN cDNA D630023F18 gene
mm9_v1_chr16_-_4001679_4001679	0.320206	FOXP3.p2	BC065125|Slx4|52864|SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)	NM_177472|Slx4|52864|SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)
mm9_v1_chrX_+_61426722_61426736	0.315372	FOXP3.p2	AK049539|3830417A13Rik|70696|RIKEN cDNA 3830417A13 gene	NM_027512|3830417A13Rik|70696|RIKEN cDNA 3830417A13 gene	AK014439|3830417A13Rik|70696|RIKEN cDNA 3830417A13 gene	BC068255|3830417A13Rik|70696|RIKEN cDNA 3830417A13 gene
mm9_v1_chr11_-_98590680_98590748	0.308317	FOXP3.p2	AF126543|Med24|23989|mediator complex subunit 24	AK193218|Med24|23989|mediator complex subunit 24	AK020269|Med24|23989|mediator complex subunit 24	AK154618|Med24|23989|mediator complex subunit 24	AK158385|Med24|23989|mediator complex subunit 24	NM_011869|Med24|23989|mediator complex subunit 24
mm9_v1_chr5_-_31504605_31504675	0.307511	FOXP3.p2	BC058976|Zfp513|101023|zinc finger protein 513	NM_175311|Zfp513|101023|zinc finger protein 513
mm9_v1_chr16_-_57292963_57292977	0.303623	FOXP3.p2	AK161475|Tmem30c|71027|transmembrane protein 30C	NM_027651|Tmem30c|71027|transmembrane protein 30C	AK016747|Tmem30c|71027|transmembrane protein 30C	AK016597|Tmem30c|71027|transmembrane protein 30C
mm9_v1_chr1_+_95757920_95757920	0.298796	FOXP3.p2	AK144526|Gal3st2|381334|galactose-3-O-sulfotransferase 2	AK165692|Gal3st2|381334|galactose-3-O-sulfotransferase 2	NM_199366|Gal3st2|381334|galactose-3-O-sulfotransferase 2
mm9_v1_chr10_-_77734341_77734501	0.28279	FOXP3.p2	
mm9_v1_chr2_+_119859152_119859168	0.277016	FOXP3.p2	AK037218|Pla2g4b|211429|phospholipase A2, group IVB (cytosolic)	AK137721|Pla2g4b|211429|phospholipase A2, group IVB (cytosolic)	NM_145378|Pla2g4b|211429|phospholipase A2, group IVB (cytosolic)
mm9_v1_chr1_-_152313294_152313294	0.274245	FOXP3.p2	AB034730|Prg4|96875|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	AK149469|Prg4|96875|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	NM_001110146|Prg4|96875|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	NM_021400|Prg4|96875|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
mm9_v1_chr6_-_40837492_40837492	0.266305	FOXP3.p2	AB065134|Moxd2|194357|monooxygenase, DBH-like 2	NM_139296|Moxd2|194357|monooxygenase, DBH-like 2
mm9_v1_chr4_+_115236321_115236321	0.260679	FOXP3.p2	NM_201640|Cyp4a31|666168|cytochrome P450, family 4, subfamily a, polypeptide 31
mm9_v1_chr18_+_37581071_37581102	0.256182	FOXP3.p2	AK078189|Pcdhb11|93882|protocadherin beta 11	NM_053136|Pcdhb11|93882|protocadherin beta 11	AK160803|Pcdhb11|93882|protocadherin beta 11
mm9_v1_chr4_-_73066105_73066105	0.24886	FOXP3.p2	NM_001013393|Gm11487|433719|predicted gene 11487
mm9_v1_chr18_+_52927362_52927362	0.241328	FOXP3.p2	AK132346|Sncaip|67847|synuclein, alpha interacting protein (synphilin)	NM_026408|Sncaip|67847|synuclein, alpha interacting protein (synphilin)
mm9_v1_chr9_-_38455101_38455106	0.210408	FOXP3.p2	BC111098|Olfr915|258781|olfactory receptor 915	NM_146785|Olfr915|258781|olfactory receptor 915
mm9_v1_chr11_+_73883671_73883671	0.203861	FOXP3.p2	BC083001|Zfp616|327963|zinc finger protein 616	NM_001177570|Zfp616|327963|zinc finger protein 616
mm9_v1_chr8_+_70047752_70047752	0.197852	FOXP3.p2	AK077364|Nat3|17962|N-acetyltransferase 3	NM_008674|Nat3|17962|N-acetyltransferase 3
mm9_v1_chr17_+_17840904_17840904	0.181331	FOXP3.p2	NM_001104539|Vmn2r90|626942|vomeronasal 2, receptor 90
mm9_v1_chr7_-_14708338_14708398	0.162841	FOXP3.p2	NM_001101586|Sult2a3|629203|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 3
mm9_v1_chr11_+_83476085_83476138	0.151156	FOXP3.p2	NM_013652|Ccl4|20303|chemokine (C-C motif) ligand 4	AK089326|Ccl4|20303|chemokine (C-C motif) ligand 4	AK154685|Ccl4|20303|chemokine (C-C motif) ligand 4	AK155053|Ccl4|20303|chemokine (C-C motif) ligand 4	M23503|Ccl4|20303|chemokine (C-C motif) ligand 4	AK156948|Ccl4|20303|chemokine (C-C motif) ligand 4	AK172472|Ccl4|20303|chemokine (C-C motif) ligand 4	M35590|Ccl4|20303|chemokine (C-C motif) ligand 4	AF128218|Ccl4|20303|chemokine (C-C motif) ligand 4	AF128219|Ccl4|20303|chemokine (C-C motif) ligand 4	BC119257|Ccl4|20303|chemokine (C-C motif) ligand 4	BC119259|Ccl4|20303|chemokine (C-C motif) ligand 4
mm9_v1_chr16_-_85030543_85030555	0.13955	FOXP3.p2	AK076506|App|11820|amyloid beta (A4) precursor protein	AK200287|App|11820|amyloid beta (A4) precursor protein	AK203089|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr11_+_73502279_73502349	0.137178	FOXP3.p2	AK145370|Zfp735|76390|zinc finger protein 735	NM_001126489|Zfp735|76390|zinc finger protein 735	BC137974|Zfp735|76390|zinc finger protein 735
mm9_v1_chr2_+_180460024_180460083	0.131635	FOXP3.p2	NM_183161|Slc17a9|228993|solute carrier family 17, member 9	BC019537|Slc17a9|228993|solute carrier family 17, member 9
mm9_v1_chr19_-_39537540_39537568	0.126205	FOXP3.p2	AF047725|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	AK050051|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	BC150721|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	NM_010002|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38
mm9_v1_chr8_+_89240252_89240401	0.115488	FOXP3.p2	AK197630|Lonp2|66887|lon peptidase 2, peroxisomal
mm9_v1_chr6_+_128942978_128943066	0.114857	FOXP3.p2	BC051485|BC064078|408064|cDNA sequence BC064078	BC016205|BC064078|408064|cDNA sequence BC064078	BC017132|BC064078|408064|cDNA sequence BC064078	BC025095|BC064078|408064|cDNA sequence BC064078	BC038635|BC064078|408064|cDNA sequence BC064078	BC096405|BC064078|408064|cDNA sequence BC064078	BC064078|BC064078|408064|cDNA sequence BC064078	AK134020|BC064078|408064|cDNA sequence BC064078
mm9_v1_chr5_+_125365789_125365870	0.11317	FOXP3.p2	BC096550|Zfp664|269704|zinc finger protein 664
mm9_v1_chr11_-_78564918_78565234	0.10438	FOXP3.p2	AY445047|Fam58b|69109|family with sequence similarity 58, member B	AK007413|Fam58b|69109|family with sequence similarity 58, member B	AK032408|Fam58b|69109|family with sequence similarity 58, member B	BC027022|Fam58b|69109|family with sequence similarity 58, member B	NM_197989|Fam58b|69109|family with sequence similarity 58, member B
mm9_v1_chr11_-_19977305_19977316	0.101502	FOXP3.p2	BC023864|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)
mm9_v1_chr13_-_3944594_3944594	0.098918	FOXP3.p2	AK148451|Ucn3|83428|urocortin 3	NM_031250|Ucn3|83428|urocortin 3
mm9_v1_chr7_-_111001598_111001720	0.0964473	FOXP3.p2	V00857|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	M26897|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	BC057014|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK011619|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK012501|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK012897|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	NM_008221|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain
mm9_v1_chr19_+_23240506_23240595	0.0955657	FOXP3.p2	AK187278|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr3_-_92556257_92556262	0.0879604	FOXP3.p2	AK003795|Lce1g|66195|late cornified envelope 1G	AK004290|Lce1g|66195|late cornified envelope 1G	NM_025413|Lce1g|66195|late cornified envelope 1G
mm9_v1_chr8_+_126547293_126547372	0.080176	FOXP3.p2	BC151125|Urb2|382038|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	NM_001029876|Urb2|382038|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
mm9_v1_chr12_+_37040755_37040991	0.0800731	FOXP3.p2	NM_025312|Sostdc1|66042|sclerostin domain containing 1	AK002240|Sostdc1|66042|sclerostin domain containing 1	AK002396|Sostdc1|66042|sclerostin domain containing 1	AK007893|Sostdc1|66042|sclerostin domain containing 1	AK007967|Sostdc1|66042|sclerostin domain containing 1	AY255635|Sostdc1|66042|sclerostin domain containing 1	AY134666|Sostdc1|66042|sclerostin domain containing 1	BC021458|Sostdc1|66042|sclerostin domain containing 1	AB059271|Sostdc1|66042|sclerostin domain containing 1	AK007935|Sostdc1|66042|sclerostin domain containing 1
mm9_v1_chr1_-_95698465_95698512	0.0678163	FOXP3.p2	AK088416|Dtymk|21915|deoxythymidylate kinase	AK019445|Dtymk|21915|deoxythymidylate kinase	AK160747|Dtymk|21915|deoxythymidylate kinase	BC069902|Dtymk|21915|deoxythymidylate kinase	AK009220|Dtymk|21915|deoxythymidylate kinase	AK019288|Dtymk|21915|deoxythymidylate kinase	NM_001105667|Dtymk|21915|deoxythymidylate kinase	NM_023136|Dtymk|21915|deoxythymidylate kinase
mm9_v1_chr17_-_46841851_46841924	0.059098	FOXP3.p2	BC010716|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform	AY338234|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform	AK160587|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform	AB053464|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform
mm9_v1_chr11_+_68933954_68933975	0.0530545	FOXP3.p2	AK050791|Hes7|84653|hairy and enhancer of split 7 (Drosophila)	BC134378|Hes7|84653|hairy and enhancer of split 7 (Drosophila)	NM_033041|Hes7|84653|hairy and enhancer of split 7 (Drosophila)	AB049065|Hes7|84653|hairy and enhancer of split 7 (Drosophila)
mm9_v1_chr2_-_89892475_89892478	0.0473368	FOXP3.p2	BC111111|Olfr140|57272|olfactory receptor 140	BC141888|Olfr140|57272|olfactory receptor 140	NM_020515|Olfr140|57272|olfactory receptor 140
mm9_v1_chrX_-_159987479_159987608	0.041074	FOXP3.p2	BC113145|Grpr|14829|gastrin releasing peptide receptor	M61000|Grpr|14829|gastrin releasing peptide receptor	NM_008177|Grpr|14829|gastrin releasing peptide receptor	AK033473|Grpr|14829|gastrin releasing peptide receptor	M57922|Grpr|14829|gastrin releasing peptide receptor
mm9_v1_chr15_+_101980990_101981035	0.0359567	FOXP3.p2	BC025931|Soat2|223920|sterol O-acyltransferase 2	NM_146064|Soat2|223920|sterol O-acyltransferase 2	AF078751|Soat2|223920|sterol O-acyltransferase 2
mm9_v1_chr15_+_75771484_75771517	0.0316816	FOXP3.p2	AK019163|Zfp623|78834|zinc finger protein 623	BC086767|Zfp623|78834|zinc finger protein 623
mm9_v1_chr8_-_108457731_108457761	0.0236302	FOXP3.p2	AK220246|Ctrl|109660|chymotrypsin-like	AK007333|Ctrl|109660|chymotrypsin-like	AK009019|Ctrl|109660|chymotrypsin-like	BC087918|Ctrl|109660|chymotrypsin-like	AB016228|Ctrl|109660|chymotrypsin-like	NM_023182|Ctrl|109660|chymotrypsin-like
