mm9_v1_chr4_-_131978279_131978374	6.24076	GAGAUGA	BC096033|Phactr4|100169|phosphatase and actin regulator 4	AK049209|Phactr4|100169|phosphatase and actin regulator 4	BC075672|Phactr4|100169|phosphatase and actin regulator 4	AK220496|Phactr4|100169|phosphatase and actin regulator 4	NM_001161797|Phactr4|100169|phosphatase and actin regulator 4	NM_175306|Phactr4|100169|phosphatase and actin regulator 4
mm9_v1_chr11_-_88579517_88579542	4.09904	GAGAUGA	AK156439|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049637|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049688|Msi2|76626|Musashi homolog 2 (Drosophila)	NM_054043|Msi2|76626|Musashi homolog 2 (Drosophila)
mm9_v1_chr3_+_89876566_89876658	4.04174	GAGAUGA	U04541|Tpm3|59069|tropomyosin 3, gamma	BC029186|Tpm3|59069|tropomyosin 3, gamma	NM_022314|Tpm3|59069|tropomyosin 3, gamma	AF317223|Tpm3|59069|tropomyosin 3, gamma
mm9_v1_chr1_-_72921438_72921462	3.90651	GAGAUGA	BC057447|Igfbp5|16011|insulin-like growth factor binding protein 5	NM_010518|Igfbp5|16011|insulin-like growth factor binding protein 5	AK142108|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr6_+_120786207_120786296	3.54153	GAGAUGA	AK171256|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK148007|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK031018|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK088417|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK143457|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK132774|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK047223|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	BC029016|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	NM_153516|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK165068|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK168833|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)
mm9_v1_chr7_+_65913571_65913874	3.40314	GAGAUGA	NM_009728|Atp10a|11982|ATPase, class V, type 10A	AK132174|Atp10a|11982|ATPase, class V, type 10A	AK172149|Atp10a|11982|ATPase, class V, type 10A	AF156549|Atp10a|11982|ATPase, class V, type 10A	BC138356|Atp10a|11982|ATPase, class V, type 10A	BC138357|Atp10a|11982|ATPase, class V, type 10A	AK172972|Atp10a|11982|ATPase, class V, type 10A	AF011337|Atp10a|11982|ATPase, class V, type 10A
mm9_v1_chr9_+_30838224_30838249	3.15728	GAGAUGA	AK036895|Zbtb44|235132|zinc finger and BTB domain containing 44	NM_001115130|Zbtb44|235132|zinc finger and BTB domain containing 44	NM_172765|Zbtb44|235132|zinc finger and BTB domain containing 44
mm9_v1_chr6_+_133985717_133985901	3.03441	GAGAUGA	AK155150|Etv6|14011|ets variant gene 6 (TEL oncogene)	NM_007961|Etv6|14011|ets variant gene 6 (TEL oncogene)	AK154569|Etv6|14011|ets variant gene 6 (TEL oncogene)
mm9_v1_chr15_-_11835393_11835453	2.99833	GAGAUGA	D78175|Npr3|18162|natriuretic peptide receptor 3	BC055897|Npr3|18162|natriuretic peptide receptor 3	NM_001039181|Npr3|18162|natriuretic peptide receptor 3	NM_008728|Npr3|18162|natriuretic peptide receptor 3
mm9_v1_chr18_+_39152776_39152837	2.93643	GAGAUGA	AK011368|Arhgap26|71302|Rho GTPase activating protein 26	NM_175164|Arhgap26|71302|Rho GTPase activating protein 26
mm9_v1_chr7_+_82600419_82600490	2.75127	GAGAUGA	NM_029332|Akap13|75547|A kinase (PRKA) anchor protein 13	AK157986|Akap13|75547|A kinase (PRKA) anchor protein 13	AK172125|Akap13|75547|A kinase (PRKA) anchor protein 13
mm9_v1_chr5_+_104183148_104183208	2.68683	GAGAUGA	AK142554|Aff1|17355|AF4/FMR2 family, member 1	NM_133919|Aff1|17355|AF4/FMR2 family, member 1
mm9_v1_chr5_+_104183591_104183591	2.44157	GAGAUGA	AK143742|Aff1|17355|AF4/FMR2 family, member 1	NM_001080798|Aff1|17355|AF4/FMR2 family, member 1
mm9_v1_chr1_-_97564139_97564174	2.36586	GAGAUGA	BC060112|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	AJ223956|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_001159745|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_009183|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	X86000|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm9_v1_chr8_+_72346327_72346515	2.05855	GAGAUGA	BC060131|Lpar2|53978|lysophosphatidic acid receptor 2	BC064676|Lpar2|53978|lysophosphatidic acid receptor 2	AK144861|Lpar2|53978|lysophosphatidic acid receptor 2	NM_020028|Lpar2|53978|lysophosphatidic acid receptor 2	AK143792|Lpar2|53978|lysophosphatidic acid receptor 2	AK051092|Lpar2|53978|lysophosphatidic acid receptor 2
mm9_v1_chr4_-_87679175_87679310	2.0483	GAGAUGA	BC021420|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AF372456|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_027326|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr13_+_46513668_46513668	1.89829	GAGAUGA	NM_001081425|Rbm24|666794|RNA binding motif protein 24
mm9_v1_chr11_-_95171521_95171560	1.7858	GAGAUGA	AK078483|Myst2|217127|MYST histone acetyltransferase 2	AK166915|Myst2|217127|MYST histone acetyltransferase 2	NM_001195003|Myst2|217127|MYST histone acetyltransferase 2	NM_001195004|Myst2|217127|MYST histone acetyltransferase 2	NM_177619|Myst2|217127|MYST histone acetyltransferase 2
mm9_v1_chr15_-_50721552_50721725	1.76777	GAGAUGA	BC099962|Trps1|83925|trichorhinophalangeal syndrome I (human)	AF346836|Trps1|83925|trichorhinophalangeal syndrome I (human)	NM_032000|Trps1|83925|trichorhinophalangeal syndrome I (human)
mm9_v1_chr6_+_83065466_83065564	1.73573	GAGAUGA	AK144946|Mogs|57377|mannosyl-oligosaccharide glucosidase	BC051949|Mogs|57377|mannosyl-oligosaccharide glucosidase	NM_020619|Mogs|57377|mannosyl-oligosaccharide glucosidase	AK157286|Mogs|57377|mannosyl-oligosaccharide glucosidase
mm9_v1_chr9_-_107192203_107192207	1.71732	GAGAUGA	AK170456|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	BC031467|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	NM_178907|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3
mm9_v1_chrX_-_101017286_101017329	1.68721	GAGAUGA	AF045692|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2	NM_009197|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm9_v1_chr18_+_5046584_5046587	1.68571	GAGAUGA	AF317422|Svil|225115|supervillin	AF317423|Svil|225115|supervillin	NM_153153|Svil|225115|supervillin	HQ259291|Svil|225115|supervillin
mm9_v1_chr8_-_118230771_118230819	1.68471	GAGAUGA	AK132165|Maf|17132|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog	NM_001025577|Maf|17132|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
mm9_v1_chr4_+_135762279_135762338	1.62838	GAGAUGA	NM_001008232|Asap3|230837|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	AK132294|Asap3|230837|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	BC085250|Asap3|230837|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
mm9_v1_chr6_-_82724366_82724447	1.60782	GAGAUGA	BC054472|Hk2|15277|hexokinase 2	AJ238540|Hk2|15277|hexokinase 2	AK019092|Hk2|15277|hexokinase 2	AK145936|Hk2|15277|hexokinase 2	AK009328|Hk2|15277|hexokinase 2	NM_013820|Hk2|15277|hexokinase 2
mm9_v1_chr2_-_58012447_58012596	1.59565	GAGAUGA	AF192525|Cytip|227929|cytohesin 1 interacting protein	AK089364|Cytip|227929|cytohesin 1 interacting protein	AF374273|Cytip|227929|cytohesin 1 interacting protein	AK152784|Cytip|227929|cytohesin 1 interacting protein	AK169575|Cytip|227929|cytohesin 1 interacting protein	BC007144|Cytip|227929|cytohesin 1 interacting protein	AK168343|Cytip|227929|cytohesin 1 interacting protein	AK037842|Cytip|227929|cytohesin 1 interacting protein	AK157859|Cytip|227929|cytohesin 1 interacting protein	AK166254|Cytip|227929|cytohesin 1 interacting protein	AK170544|Cytip|227929|cytohesin 1 interacting protein	AK170796|Cytip|227929|cytohesin 1 interacting protein	AK171467|Cytip|227929|cytohesin 1 interacting protein	AK172380|Cytip|227929|cytohesin 1 interacting protein	NM_139200|Cytip|227929|cytohesin 1 interacting protein	AK170301|Cytip|227929|cytohesin 1 interacting protein	AK172071|Cytip|227929|cytohesin 1 interacting protein	AK030882|Cytip|227929|cytohesin 1 interacting protein
mm9_v1_chr1_+_134212642_134212774	1.59104	GAGAUGA	NM_001195025|Nuak2|74137|NUAK family, SNF1-like kinase, 2	NM_028778|Nuak2|74137|NUAK family, SNF1-like kinase, 2	AK034082|Nuak2|74137|NUAK family, SNF1-like kinase, 2	AK004737|Nuak2|74137|NUAK family, SNF1-like kinase, 2	AK033672|Nuak2|74137|NUAK family, SNF1-like kinase, 2	BC046833|Nuak2|74137|NUAK family, SNF1-like kinase, 2	BC033302|Nuak2|74137|NUAK family, SNF1-like kinase, 2
mm9_v1_chr12_+_3806955_3807159	1.56582	GAGAUGA	NM_007872|Dnmt3a|13435|DNA methyltransferase 3A	AF503867|Dnmt3a|13435|DNA methyltransferase 3A	AK090132|Dnmt3a|13435|DNA methyltransferase 3A	AK147676|Dnmt3a|13435|DNA methyltransferase 3A	BC007466|Dnmt3a|13435|DNA methyltransferase 3A	AF068625|Dnmt3a|13435|DNA methyltransferase 3A	AK147263|Dnmt3a|13435|DNA methyltransferase 3A	AK147627|Dnmt3a|13435|DNA methyltransferase 3A	AK147642|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr16_+_33380860_33381006	1.51559	GAGAUGA	NM_011749|Zfp148|22661|zinc finger protein 148	AF316548|Zfp148|22661|zinc finger protein 148	X98096|Zfp148|22661|zinc finger protein 148	BC026144|Zfp148|22661|zinc finger protein 148
mm9_v1_chr10_-_53795556_53795601	1.44319	GAGAUGA	AK031038|Man1a|17155|mannosidase 1, alpha	NM_008548|Man1a|17155|mannosidase 1, alpha
mm9_v1_chrX_-_137077639_137077729	1.39993	GAGAUGA	BC028813|Tsc22d3|14605|TSC22 domain family, member 3	AF201288|Tsc22d3|14605|TSC22 domain family, member 3	AF024519|Tsc22d3|14605|TSC22 domain family, member 3	AK083389|Tsc22d3|14605|TSC22 domain family, member 3	NM_010286|Tsc22d3|14605|TSC22 domain family, member 3	AK144196|Tsc22d3|14605|TSC22 domain family, member 3
mm9_v1_chr10_+_17516024_17516131	1.31599	GAGAUGA	AK084639|Txlnb|378431|taxilin beta	NM_138628|Txlnb|378431|taxilin beta	AK084579|Txlnb|378431|taxilin beta	AK052324|Txlnb|378431|taxilin beta	AF422244|Txlnb|378431|taxilin beta	AF422245|Txlnb|378431|taxilin beta	AK137442|Txlnb|378431|taxilin beta	BC141023|Txlnb|378431|taxilin beta	AK085904|Txlnb|378431|taxilin beta
mm9_v1_chr2_-_160934743_160934810	1.3106	GAGAUGA	BC145629|Chd6|71389|chromodomain helicase DNA binding protein 6	BC150806|Chd6|71389|chromodomain helicase DNA binding protein 6	AK018129|Chd6|71389|chromodomain helicase DNA binding protein 6	AK040495|Chd6|71389|chromodomain helicase DNA binding protein 6	AK142177|Chd6|71389|chromodomain helicase DNA binding protein 6	AK086807|Chd6|71389|chromodomain helicase DNA binding protein 6	AK162083|Chd6|71389|chromodomain helicase DNA binding protein 6	NM_173368|Chd6|71389|chromodomain helicase DNA binding protein 6	AK080892|Chd6|71389|chromodomain helicase DNA binding protein 6	AK080927|Chd6|71389|chromodomain helicase DNA binding protein 6
mm9_v1_chr7_-_123182257_123182257	1.21323	GAGAUGA	AK048143|Sox6|20679|SRY-box containing gene 6	NM_001025559|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr6_-_145198693_145198778	1.18764	GAGAUGA	BC119495|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	BC004642|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	BC010202|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	AK155064|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	AK164065|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	NM_021284|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
mm9_v1_chr16_-_94509462_94509462	1.17917	GAGAUGA	BC050090|Hlcs|110948|holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	NM_139145|Hlcs|110948|holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)
mm9_v1_chr9_+_44412931_44412987	1.17546	GAGAUGA	NM_001110826|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_007841|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_181324|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK148483|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK036648|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK054144|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chr4_-_131631226_131631229	1.17403	GAGAUGA	NM_001128607|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr15_-_93105514_93105610	1.12007	GAGAUGA	AK147387|Gxylt1|223827|glucoside xylosyltransferase 1	NM_001033275|Gxylt1|223827|glucoside xylosyltransferase 1	BC141302|Gxylt1|223827|glucoside xylosyltransferase 1	BC171972|Gxylt1|223827|glucoside xylosyltransferase 1
mm9_v1_chr7_+_75097142_75097267	1.10612	GAGAUGA	NM_010513|Igf1r|16001|insulin-like growth factor I receptor
mm9_v1_chr2_-_121632749_121632811	1.07809	GAGAUGA	AK054484|Frmd5|228564|FERM domain containing 5	BC062889|Frmd5|228564|FERM domain containing 5	AK146383|Frmd5|228564|FERM domain containing 5	AK048865|Frmd5|228564|FERM domain containing 5	NM_172673|Frmd5|228564|FERM domain containing 5
mm9_v1_chr15_+_99803210_99803320	1.07615	GAGAUGA	NM_001024526|Larp4|207214|La ribonucleoprotein domain family, member 4	AK165392|Larp4|207214|La ribonucleoprotein domain family, member 4	AK172198|Larp4|207214|La ribonucleoprotein domain family, member 4	AK049756|Larp4|207214|La ribonucleoprotein domain family, member 4	BC075726|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr3_+_88769733_88769733	1.07268	GAGAUGA	NM_138679|Ash1l|192195|ash1 (absent, small, or homeotic)-like (Drosophila)
mm9_v1_chr4_+_140976693_140976693	1.0686	GAGAUGA	AK030025|Hspb7|29818|heat shock protein family, member 7 (cardiovascular)	NM_013868|Hspb7|29818|heat shock protein family, member 7 (cardiovascular)
mm9_v1_chr15_-_98701613_98701613	1.06645	GAGAUGA	NM_001033276|Mll2|381022|myeloid/lymphoid or mixed-lineage leukemia 2
mm9_v1_chr4_-_131604821_131605088	1.06237	GAGAUGA	BC079875|Epb4.1|269587|erythrocyte protein band 4.1	AK220462|Epb4.1|269587|erythrocyte protein band 4.1	NM_001128606|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr13_+_15555483_15555555	1.0552	GAGAUGA	AK158261|Gli3|14634|GLI-Kruppel family member GLI3	NM_008130|Gli3|14634|GLI-Kruppel family member GLI3
mm9_v1_chr11_+_60351159_60351225	1.04352	GAGAUGA	NM_172943|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)
mm9_v1_chr1_-_107253245_107253286	0.990088	GAGAUGA	AK044638|Rnf152|320311|ring finger protein 152	NM_001160368|Rnf152|320311|ring finger protein 152	NM_178779|Rnf152|320311|ring finger protein 152
mm9_v1_chr1_+_140860285_140860402	0.988519	GAGAUGA	NM_001166501|Dennd1b|329260|DENN/MADD domain containing 1B	BC042698|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr10_-_66559568_66559740	0.978844	GAGAUGA	AY562231|Reep3|28193|receptor accessory protein 3	AK154559|Reep3|28193|receptor accessory protein 3	AK047728|Reep3|28193|receptor accessory protein 3	AK079649|Reep3|28193|receptor accessory protein 3	NM_178606|Reep3|28193|receptor accessory protein 3	BC004607|Reep3|28193|receptor accessory protein 3	AK008058|Reep3|28193|receptor accessory protein 3	AK012403|Reep3|28193|receptor accessory protein 3	AK005026|Reep3|28193|receptor accessory protein 3	AK028868|Reep3|28193|receptor accessory protein 3
mm9_v1_chr11_+_117515548_117515602	0.973842	GAGAUGA	NM_198022|Tnrc6c|217351|trinucleotide repeat containing 6C
mm9_v1_chrX_-_154036606_154036649	0.962316	GAGAUGA	AK148325|Mbtps2|270669|membrane-bound transcription factor peptidase, site 2	NM_172307|Mbtps2|270669|membrane-bound transcription factor peptidase, site 2
mm9_v1_chr4_-_43496556_43496593	0.961213	GAGAUGA	AJ236881|Sit1|54390|suppression inducing transmembrane adaptor 1	AK079882|Sit1|54390|suppression inducing transmembrane adaptor 1	NM_019436|Sit1|54390|suppression inducing transmembrane adaptor 1	BC064055|Sit1|54390|suppression inducing transmembrane adaptor 1
mm9_v1_chrX_+_160528118_160528196	0.948049	GAGAUGA	AF178085|Tmem27|57394|transmembrane protein 27	NM_020626|Tmem27|57394|transmembrane protein 27	AK148534|Tmem27|57394|transmembrane protein 27	AK002337|Tmem27|57394|transmembrane protein 27	BC049912|Tmem27|57394|transmembrane protein 27
mm9_v1_chr15_-_97662101_97662197	0.923388	GAGAUGA	BC057332|Hdac7|56233|histone deacetylase 7	NM_019572|Hdac7|56233|histone deacetylase 7	AY943912|Hdac7|56233|histone deacetylase 7
mm9_v1_chr7_-_142129892_142130112	0.916736	GAGAUGA	BC158077|Fam196a|627214|family with sequence similarity 196, member A	BC158080|Fam196a|627214|family with sequence similarity 196, member A	AK046823|Fam196a|627214|family with sequence similarity 196, member A	AK046846|Fam196a|627214|family with sequence similarity 196, member A	AK140373|Fam196a|627214|family with sequence similarity 196, member A	NM_001143802|Fam196a|627214|family with sequence similarity 196, member A
mm9_v1_chrX_-_92640149_92640178	0.907492	GAGAUGA	BC053442|Fam123b|72345|family with sequence similarity 123, member B	AK012651|Fam123b|72345|family with sequence similarity 123, member B	AK049774|Fam123b|72345|family with sequence similarity 123, member B	NM_175179|Fam123b|72345|family with sequence similarity 123, member B
mm9_v1_chr11_+_61497911_61497965	0.905106	GAGAUGA	NM_178618|Fam83g|69640|family with sequence similarity 83, member G	BC085279|Fam83g|69640|family with sequence similarity 83, member G	AK028566|Fam83g|69640|family with sequence similarity 83, member G
mm9_v1_chrX_+_50265390_50265552	0.901704	GAGAUGA	AK157045|Phf6|70998|PHD finger protein 6	AK012211|Phf6|70998|PHD finger protein 6	AK077803|Phf6|70998|PHD finger protein 6	AK163345|Phf6|70998|PHD finger protein 6	BC043127|Phf6|70998|PHD finger protein 6	NM_027642|Phf6|70998|PHD finger protein 6	AK141804|Phf6|70998|PHD finger protein 6	BC055330|Phf6|70998|PHD finger protein 6	AK122560|Phf6|70998|PHD finger protein 6	AK028498|Phf6|70998|PHD finger protein 6	AK038320|Phf6|70998|PHD finger protein 6	BC057374|Phf6|70998|PHD finger protein 6	AK192342|Phf6|70998|PHD finger protein 6	AK213676|Phf6|70998|PHD finger protein 6
mm9_v1_chr15_+_99869071_99869185	0.897272	GAGAUGA	NM_001159361|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	AK147562|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm9_v1_chrX_-_48559008_48559019	0.887068	GAGAUGA	AK040522|Mbnl3|171170|muscleblind-like 3 (Drosophila)	NM_134163|Mbnl3|171170|muscleblind-like 3 (Drosophila)	AK088971|Mbnl3|171170|muscleblind-like 3 (Drosophila)
mm9_v1_chr8_+_23970006_23970020	0.885958	GAGAUGA	AK028058|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK082463|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	NM_001081149|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK039615|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK036885|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK054322|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK132474|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK143408|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3
mm9_v1_chr7_-_121261292_121261300	0.880118	GAGAUGA	AK011419|Rras2|66922|related RAS viral (r-ras) oncogene homolog 2	AK078870|Rras2|66922|related RAS viral (r-ras) oncogene homolog 2	NM_025846|Rras2|66922|related RAS viral (r-ras) oncogene homolog 2
mm9_v1_chr18_-_80909796_80909814	0.878002	GAGAUGA	BC061509|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	AK048610|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	AK144965|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_001164109|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_001164110|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_198429|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1
mm9_v1_chr4_-_87452140_87452217	0.860449	GAGAUGA	AK147009|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK008707|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK019458|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_029931|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr19_-_11340591_11340730	0.842371	GAGAUGA	AK171638|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK080040|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	BC028322|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK171659|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK137469|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK143824|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK041428|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK080148|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK156033|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK017903|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	NM_007641|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK171631|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK166571|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1	AK166659|Ms4a1|12482|membrane-spanning 4-domains, subfamily A, member 1
mm9_v1_chr7_-_105509797_105509909	0.838869	GAGAUGA	AK035461|Tsku|244152|tsukushin	AK053973|Tsku|244152|tsukushin	AK137208|Tsku|244152|tsukushin	NM_001024619|Tsku|244152|tsukushin	NM_001168540|Tsku|244152|tsukushin	NM_001168541|Tsku|244152|tsukushin	NM_001168539|Tsku|244152|tsukushin
mm9_v1_chr8_+_74659107_74659219	0.838763	GAGAUGA	AK049383|Tpm4|326618|tropomyosin 4	BC070421|Tpm4|326618|tropomyosin 4	NM_001001491|Tpm4|326618|tropomyosin 4	BC023701|Tpm4|326618|tropomyosin 4	BC032174|Tpm4|326618|tropomyosin 4	BC032175|Tpm4|326618|tropomyosin 4	BC023827|Tpm4|326618|tropomyosin 4
mm9_v1_chr18_-_80904852_80904931	0.838375	GAGAUGA	EU887569|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	EU887571|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	EU887572|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	AF049606|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	AK004810|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_001164111|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_001164112|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_016791|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1
mm9_v1_chr1_+_89223558_89223642	0.830099	GAGAUGA	NM_146112|Gigyf2|227331|GRB10 interacting GYF protein 2	AK079246|Gigyf2|227331|GRB10 interacting GYF protein 2	NM_001110212|Gigyf2|227331|GRB10 interacting GYF protein 2	AK011414|Gigyf2|227331|GRB10 interacting GYF protein 2	AK034426|Gigyf2|227331|GRB10 interacting GYF protein 2	AK160878|Gigyf2|227331|GRB10 interacting GYF protein 2	AK144058|Gigyf2|227331|GRB10 interacting GYF protein 2	BC089036|Gigyf2|227331|GRB10 interacting GYF protein 2	BC006835|Gigyf2|227331|GRB10 interacting GYF protein 2	BC076610|Gigyf2|227331|GRB10 interacting GYF protein 2	AY176043|Gigyf2|227331|GRB10 interacting GYF protein 2	AK137375|Gigyf2|227331|GRB10 interacting GYF protein 2
mm9_v1_chr6_+_91937103_91937154	0.810631	GAGAUGA	NM_172731|Fgd5|232237|FYVE, RhoGEF and PH domain containing 5	BC145502|Fgd5|232237|FYVE, RhoGEF and PH domain containing 5	BC150786|Fgd5|232237|FYVE, RhoGEF and PH domain containing 5
mm9_v1_chr1_-_108610861_108610866	0.810108	GAGAUGA	AK049473|Bcl2|12043|B-cell leukemia/lymphoma 2	NM_009741|Bcl2|12043|B-cell leukemia/lymphoma 2	NM_177410|Bcl2|12043|B-cell leukemia/lymphoma 2
mm9_v1_chr6_+_42214999_42215177	0.791466	GAGAUGA	NM_007610|Casp2|12366|caspase 2	Y13085|Casp2|12366|caspase 2	BC034262|Casp2|12366|caspase 2	AK170649|Casp2|12366|caspase 2	AK052396|Casp2|12366|caspase 2	AK133829|Casp2|12366|caspase 2	AK042072|Casp2|12366|caspase 2	D28492|Casp2|12366|caspase 2	AK199368|Casp2|12366|caspase 2	AK210521|Casp2|12366|caspase 2
mm9_v1_chr1_+_64579358_64579513	0.787807	GAGAUGA	NM_001037726|Creb1|12912|cAMP responsive element binding protein 1	NM_009952|Creb1|12912|cAMP responsive element binding protein 1	NM_133828|Creb1|12912|cAMP responsive element binding protein 1	AK079223|Creb1|12912|cAMP responsive element binding protein 1	X92497|Creb1|12912|cAMP responsive element binding protein 1	AK042595|Creb1|12912|cAMP responsive element binding protein 1	BC021649|Creb1|12912|cAMP responsive element binding protein 1	M95106|Creb1|12912|cAMP responsive element binding protein 1	AF448507|Creb1|12912|cAMP responsive element binding protein 1
mm9_v1_chr9_-_101154160_101154163	0.783042	GAGAUGA	NM_001161362|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha
mm9_v1_chr8_+_32222291_32222336	0.779388	GAGAUGA	AK077856|Rnf122|68867|ring finger protein 122	AK171823|Rnf122|68867|ring finger protein 122	AK136206|Rnf122|68867|ring finger protein 122	AK162034|Rnf122|68867|ring finger protein 122	BC038399|Rnf122|68867|ring finger protein 122	NM_175136|Rnf122|68867|ring finger protein 122	AK085376|Rnf122|68867|ring finger protein 122
mm9_v1_chr4_+_19935558_19935623	0.770506	GAGAUGA	AK050374|Ttpa|50500|tocopherol (alpha) transfer protein	BC099869|Ttpa|50500|tocopherol (alpha) transfer protein	BC099870|Ttpa|50500|tocopherol (alpha) transfer protein	BC099871|Ttpa|50500|tocopherol (alpha) transfer protein	NM_015767|Ttpa|50500|tocopherol (alpha) transfer protein	BC099868|Ttpa|50500|tocopherol (alpha) transfer protein	AF218416|Ttpa|50500|tocopherol (alpha) transfer protein	AK004882|Ttpa|50500|tocopherol (alpha) transfer protein
mm9_v1_chr5_-_144493077_144493148	0.744462	GAGAUGA	NM_029749|Usp42|76800|ubiquitin specific peptidase 42
mm9_v1_chr7_-_123174560_123174560	0.741803	GAGAUGA	AK030713|Sox6|20679|SRY-box containing gene 6	NM_001025560|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr18_+_36838868_36838897	0.732451	GAGAUGA	NM_001083317|Slc35a4|67843|solute carrier family 35, member A4	NM_026404|Slc35a4|67843|solute carrier family 35, member A4
mm9_v1_chr10_+_79451332_79451366	0.717131	GAGAUGA	AK051845|Cnn2|12798|calponin 2	NM_007725|Cnn2|12798|calponin 2
mm9_v1_chr2_+_78709195_78709267	0.686612	GAGAUGA	BC011477|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	NM_009454|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)
mm9_v1_chr11_+_87881747_87881842	0.683474	GAGAUGA	AF104410|Vezf1|22344|vascular endothelial zinc finger 1	NM_016686|Vezf1|22344|vascular endothelial zinc finger 1
mm9_v1_chr8_+_74713536_74713566	0.680716	GAGAUGA	AK157000|Hsh2d|209488|hematopoietic SH2 domain containing	AY319653|Hsh2d|209488|hematopoietic SH2 domain containing	NM_197944|Hsh2d|209488|hematopoietic SH2 domain containing
mm9_v1_chr6_-_52154455_52154585	0.679466	GAGAUGA	M36604|Hoxa5|15402|homeobox A5	X16840|Hoxa5|15402|homeobox A5	M28021|Hoxa5|15402|homeobox A5	NM_010453|Hoxa5|15402|homeobox A5
mm9_v1_chr8_+_41597112_41597221	0.653769	GAGAUGA	AK171221|Vps37a|52348|vacuolar protein sorting 37A (yeast)	NM_033560|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK170961|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK171055|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK137479|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK016385|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK048942|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK054055|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK170280|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK157507|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK170943|Vps37a|52348|vacuolar protein sorting 37A (yeast)	BC039290|Vps37a|52348|vacuolar protein sorting 37A (yeast)	BC110396|Vps37a|52348|vacuolar protein sorting 37A (yeast)
mm9_v1_chr6_+_120314116_120314182	0.652991	GAGAUGA	AK041568|Kdm5a|214899|lysine (K)-specific demethylase 5A	NM_145997|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK166055|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK159079|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK144877|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK139619|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK046187|Kdm5a|214899|lysine (K)-specific demethylase 5A	BC011506|Kdm5a|214899|lysine (K)-specific demethylase 5A
mm9_v1_chr4_-_118862555_118862615	0.65058	GAGAUGA	BC063257|Ermap|27028|erythroblast membrane-associated protein	AF153906|Ermap|27028|erythroblast membrane-associated protein	AK036702|Ermap|27028|erythroblast membrane-associated protein	AK158114|Ermap|27028|erythroblast membrane-associated protein	AK137510|Ermap|27028|erythroblast membrane-associated protein	NM_013848|Ermap|27028|erythroblast membrane-associated protein
mm9_v1_chr15_-_102993714_102993747	0.646374	GAGAUGA	BC062960|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	NM_027885|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK090367|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK198888|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK204061|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase
mm9_v1_chr2_+_5872500_5872551	0.643209	GAGAUGA	BC049622|Upf2|326622|UPF2 regulator of nonsense transcripts homolog (yeast)	NM_001081132|Upf2|326622|UPF2 regulator of nonsense transcripts homolog (yeast)	BC138358|Upf2|326622|UPF2 regulator of nonsense transcripts homolog (yeast)	BC138359|Upf2|326622|UPF2 regulator of nonsense transcripts homolog (yeast)
mm9_v1_chr1_+_140864297_140864301	0.641285	GAGAUGA	AK155727|Dennd1b|329260|DENN/MADD domain containing 1B	NM_181347|Dennd1b|329260|DENN/MADD domain containing 1B	BC141388|Dennd1b|329260|DENN/MADD domain containing 1B	BC141389|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr2_+_101464874_101464960	0.622441	GAGAUGA	AK089075|Rag2|19374|recombination activating gene 2	AK031014|Rag2|19374|recombination activating gene 2	AK040375|Rag2|19374|recombination activating gene 2	NM_009020|Rag2|19374|recombination activating gene 2	BC120548|Rag2|19374|recombination activating gene 2	BC125473|Rag2|19374|recombination activating gene 2	BC144856|Rag2|19374|recombination activating gene 2	M64796|Rag2|19374|recombination activating gene 2
mm9_v1_chr12_-_106923394_106923487	0.617257	GAGAUGA	AK085790|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	AK083213|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	BC062182|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	AK086802|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	NM_029654|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)
mm9_v1_chr19_-_47538898_47538933	0.61564	GAGAUGA	AJ007012|Sh3pxd2a|14218|SH3 and PX domains 2A	NM_001164717|Sh3pxd2a|14218|SH3 and PX domains 2A	NM_008018|Sh3pxd2a|14218|SH3 and PX domains 2A
mm9_v1_chr13_-_58712170_58712237	0.612883	GAGAUGA	AF305211|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	BC010472|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	BC013783|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	BC037061|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	AK052784|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	AK085680|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	AK145077|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	AK164740|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	AK164752|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	NM_022317|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3
mm9_v1_chr19_+_46647844_46647860	0.610027	GAGAUGA	AK162407|Sfxn2|94279|sideroflexin 2	NM_053196|Sfxn2|94279|sideroflexin 2	AK034875|Sfxn2|94279|sideroflexin 2	BC019808|Sfxn2|94279|sideroflexin 2
mm9_v1_chr6_-_71390592_71390638	0.609845	GAGAUGA	AK164384|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)	NM_024288|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
mm9_v1_chr7_-_123138599_123138599	0.608468	GAGAUGA	NM_011445|Sox6|20679|SRY-box containing gene 6	U32614|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr6_+_100783598_100783865	0.604385	GAGAUGA	BC110429|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	AK082539|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	NM_182939|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	AK084169|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	BC112399|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	BC056340|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	BC098464|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2
mm9_v1_chr8_-_125201971_125202083	0.598083	GAGAUGA	AK033680|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AK041887|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_001109873|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_177289|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr15_-_96529998_96530181	0.592855	GAGAUGA	BC041108|Slc38a2|67760|solute carrier family 38, member 2	BC027259|Slc38a2|67760|solute carrier family 38, member 2	AK129342|Slc38a2|67760|solute carrier family 38, member 2	BC048178|Slc38a2|67760|solute carrier family 38, member 2	NM_175121|Slc38a2|67760|solute carrier family 38, member 2	AK017145|Slc38a2|67760|solute carrier family 38, member 2	AK030917|Slc38a2|67760|solute carrier family 38, member 2	AK031615|Slc38a2|67760|solute carrier family 38, member 2	AK047403|Slc38a2|67760|solute carrier family 38, member 2
mm9_v1_chr4_+_48137778_48137803	0.586638	GAGAUGA	AK014718|Stx17|67727|syntaxin 17	AK154503|Stx17|67727|syntaxin 17	NM_026343|Stx17|67727|syntaxin 17	AK011400|Stx17|67727|syntaxin 17	AK135240|Stx17|67727|syntaxin 17	AK018526|Stx17|67727|syntaxin 17	AK034718|Stx17|67727|syntaxin 17	BC028639|Stx17|67727|syntaxin 17
mm9_v1_chr4_+_21703416_21703444	0.58292	GAGAUGA	AK040660|Usp45|77593|ubiquitin specific petidase 45	AK162825|Usp45|77593|ubiquitin specific petidase 45	NM_152825|Usp45|77593|ubiquitin specific petidase 45	AK088073|Usp45|77593|ubiquitin specific petidase 45	BC027768|Usp45|77593|ubiquitin specific petidase 45
mm9_v1_chr15_+_102797295_102797295	0.573847	GAGAUGA	AK033186|Hoxc10|209448|homeobox C10	NM_010462|Hoxc10|209448|homeobox C10
mm9_v1_chr11_+_95198329_95198359	0.569159	GAGAUGA	AK077747|Fam117a|215512|family with sequence similarity 117, memberA	AK143632|Fam117a|215512|family with sequence similarity 117, memberA	AK165378|Fam117a|215512|family with sequence similarity 117, memberA	AK167417|Fam117a|215512|family with sequence similarity 117, memberA	NM_172543|Fam117a|215512|family with sequence similarity 117, memberA	BC055690|Fam117a|215512|family with sequence similarity 117, memberA
mm9_v1_chr19_-_42827264_42827264	0.5666	GAGAUGA	AK038414|Pyroxd2|74580|pyridine nucleotide-disulphide oxidoreductase domain 2	NM_029011|Pyroxd2|74580|pyridine nucleotide-disulphide oxidoreductase domain 2
mm9_v1_chr11_+_98064618_98064756	0.566267	GAGAUGA	NM_001109626|Cdk12|69131|cyclin-dependent kinase 12	NM_001109628|Cdk12|69131|cyclin-dependent kinase 12	NM_026952|Cdk12|69131|cyclin-dependent kinase 12	AY072295|Cdk12|69131|cyclin-dependent kinase 12	BC116645|Cdk12|69131|cyclin-dependent kinase 12	BC050142|Cdk12|69131|cyclin-dependent kinase 12	AK129237|Cdk12|69131|cyclin-dependent kinase 12	AK007584|Cdk12|69131|cyclin-dependent kinase 12	AK164881|Cdk12|69131|cyclin-dependent kinase 12
mm9_v1_chr10_+_120802099_120802365	0.56104	GAGAUGA	AK040524|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK049162|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK054046|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	NM_029364|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK030773|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK135016|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK170791|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	BC055328|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK087265|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK149863|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK165917|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK169485|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK165180|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK164907|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK083597|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK159562|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK197322|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK200155|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK205939|Gns|75612|glucosamine (N-acetyl)-6-sulfatase
mm9_v1_chr5_-_63157309_63157425	0.559007	GAGAUGA	AK037027|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK039153|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK041540|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	NM_178407|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm9_v1_chr12_-_86680251_86680341	0.554953	GAGAUGA	BC117972|Nek9|217718|NIMA (never in mitosis gene a)-related expressed kinase 9	BC117971|Nek9|217718|NIMA (never in mitosis gene a)-related expressed kinase 9	AJ489828|Nek9|217718|NIMA (never in mitosis gene a)-related expressed kinase 9	AK173323|Nek9|217718|NIMA (never in mitosis gene a)-related expressed kinase 9	NM_145138|Nek9|217718|NIMA (never in mitosis gene a)-related expressed kinase 9
mm9_v1_chr18_-_39078304_39078358	0.553146	GAGAUGA	U67610|Fgf1|14164|fibroblast growth factor 1	AK035330|Fgf1|14164|fibroblast growth factor 1	NM_010197|Fgf1|14164|fibroblast growth factor 1
mm9_v1_chr8_-_127473082_127473245	0.548838	GAGAUGA	NM_053207|Egln1|112405|EGL nine homolog 1 (C. elegans)
mm9_v1_chr13_-_37141055_37141088	0.547128	GAGAUGA	AK163591|F13a1|74145|coagulation factor XIII, A1 subunit	BC040274|F13a1|74145|coagulation factor XIII, A1 subunit	AK036403|F13a1|74145|coagulation factor XIII, A1 subunit	AK049092|F13a1|74145|coagulation factor XIII, A1 subunit	AK165311|F13a1|74145|coagulation factor XIII, A1 subunit	AK170215|F13a1|74145|coagulation factor XIII, A1 subunit	AK170278|F13a1|74145|coagulation factor XIII, A1 subunit	AK170860|F13a1|74145|coagulation factor XIII, A1 subunit	AK171273|F13a1|74145|coagulation factor XIII, A1 subunit	NM_028784|F13a1|74145|coagulation factor XIII, A1 subunit
mm9_v1_chr1_-_153937364_153937449	0.542614	GAGAUGA	AK144357|LOC545371|545371|hypothetical protein LOC545371	NM_197990|1700025G04Rik|69399|RIKEN cDNA 1700025G04 gene
mm9_v1_chr11_-_34597324_34597373	0.541093	GAGAUGA	AY027438|Dock2|94176|dedicator of cyto-kinesis 2	NM_033374|Dock2|94176|dedicator of cyto-kinesis 2
mm9_v1_chr9_-_119932620_119932715	0.540593	GAGAUGA	BC117959|Xirp1|22437|xin actin-binding repeat containing 1	BC117960|Xirp1|22437|xin actin-binding repeat containing 1	AF051945|Xirp1|22437|xin actin-binding repeat containing 1	NM_011724|Xirp1|22437|xin actin-binding repeat containing 1
mm9_v1_chr1_-_157820378_157820386	0.540025	GAGAUGA	AK044664|Cep350|74081|centrosomal protein 350	NM_001039184|Cep350|74081|centrosomal protein 350
mm9_v1_chr18_+_42435006_42435038	0.538454	GAGAUGA	NM_172626|Rbm27|225432|RNA binding motif protein 27	AY461716|Rbm27|225432|RNA binding motif protein 27
mm9_v1_chr1_+_191552133_191552202	0.537987	GAGAUGA	AK037646|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	NM_008976|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	AK086524|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	AK028783|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14
mm9_v1_chr9_+_108984968_108985054	0.53443	GAGAUGA	AK137013|Ccdc51|66658|coiled-coil domain containing 51	AK141240|Ccdc51|66658|coiled-coil domain containing 51	NM_025689|Ccdc51|66658|coiled-coil domain containing 51	AK017860|Ccdc51|66658|coiled-coil domain containing 51
mm9_v1_chr7_+_28964486_28964515	0.530719	GAGAUGA	BC019545|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	NM_001037957|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	NM_010092|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	Y18280|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm9_v1_chr7_+_13512764_13512769	0.529154	GAGAUGA	AK028523|2310014L17Rik|381845|RIKEN cDNA 2310014L17 gene	NM_029809|2310014L17Rik|381845|RIKEN cDNA 2310014L17 gene	AK009344|2310014L17Rik|381845|RIKEN cDNA 2310014L17 gene	BC141220|2310014L17Rik|381845|RIKEN cDNA 2310014L17 gene
mm9_v1_chr15_+_99984826_99984839	0.52883	GAGAUGA	AK030064|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	NM_172819|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	BC137857|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	BC137858|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm9_v1_chr15_+_99800504_99800504	0.517568	GAGAUGA	AK139636|Larp4|207214|La ribonucleoprotein domain family, member 4	NM_001080948|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr15_+_25772997_25773018	0.514867	GAGAUGA	NM_001034851|Fam134b|66270|family with sequence similarity 134, member B
mm9_v1_chr4_-_106850812_106850984	0.514184	GAGAUGA	AK008694|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene	BC028321|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene	AK011991|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene	AK008715|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene	NM_025617|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene
mm9_v1_chr16_+_35938555_35938555	0.507841	GAGAUGA	BC070466|Parp9|80285|poly (ADP-ribose) polymerase family, member 9	NM_030253|Parp9|80285|poly (ADP-ribose) polymerase family, member 9
mm9_v1_chr3_+_94928435_94928438	0.504415	GAGAUGA	AK144408|Tmod4|50874|tropomodulin 4	AK144535|Tmod4|50874|tropomodulin 4	NM_016712|Tmod4|50874|tropomodulin 4
mm9_v1_chrX_+_103382432_103382595	0.499343	GAGAUGA	NM_008828|Pgk1|18655|phosphoglycerate kinase 1	AK145846|Pgk1|18655|phosphoglycerate kinase 1	AK133877|Pgk1|18655|phosphoglycerate kinase 1	AK164440|Pgk1|18655|phosphoglycerate kinase 1	BC108372|Pgk1|18655|phosphoglycerate kinase 1	BC023819|Pgk1|18655|phosphoglycerate kinase 1	BC032167|Pgk1|18655|phosphoglycerate kinase 1	AK167441|Pgk1|18655|phosphoglycerate kinase 1	AK167459|Pgk1|18655|phosphoglycerate kinase 1	AK167710|Pgk1|18655|phosphoglycerate kinase 1	BC083355|Pgk1|18655|phosphoglycerate kinase 1	M15668|Pgk1|18655|phosphoglycerate kinase 1	EF437325|Pgk1|18655|phosphoglycerate kinase 1
mm9_v1_chr1_-_156573049_156573160	0.498659	GAGAUGA	NM_009782|Cacna1e|12290|calcium channel, voltage-dependent, R type, alpha 1E subunit	BC150750|Cacna1e|12290|calcium channel, voltage-dependent, R type, alpha 1E subunit
mm9_v1_chr9_-_108092712_108092716	0.497716	GAGAUGA	NM_007567|Bsn|12217|bassoon
mm9_v1_chr11_+_75007475_75007498	0.492808	GAGAUGA	AK140456|Rtn4rl1|237847|reticulon 4 receptor-like 1	NM_177708|Rtn4rl1|237847|reticulon 4 receptor-like 1	AK033286|Rtn4rl1|237847|reticulon 4 receptor-like 1
mm9_v1_chr4_-_126645129_126645179	0.491296	GAGAUGA	AK148366|Zmym4|67785|zinc finger, MYM-type 4	NM_001114399|Zmym4|67785|zinc finger, MYM-type 4
mm9_v1_chr13_-_37142112_37142112	0.491219	GAGAUGA	AK030914|F13a1|74145|coagulation factor XIII, A1 subunit	NM_001166391|F13a1|74145|coagulation factor XIII, A1 subunit
mm9_v1_chr8_-_125222837_125223008	0.49003	GAGAUGA	BC141396|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	BC151156|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AF038029|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_009824|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr8_+_107800316_107800347	0.48667	GAGAUGA	AK079536|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	BC027290|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	AY459322|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	AK053846|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	NM_030152|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)
mm9_v1_chr2_-_28771940_28771959	0.482078	GAGAUGA	NM_019446|Barhl1|54422|BarH-like 1 (Drosophila)	AB043980|Barhl1|54422|BarH-like 1 (Drosophila)	BC055731|Barhl1|54422|BarH-like 1 (Drosophila)	NM_001164186|Barhl1|54422|BarH-like 1 (Drosophila)
mm9_v1_chr9_+_64027101_64027115	0.474577	GAGAUGA	NM_183316|Snapc5|330959|small nuclear RNA activating complex, polypeptide 5	BC028529|Snapc5|330959|small nuclear RNA activating complex, polypeptide 5
mm9_v1_chr14_-_73725576_73725603	0.473147	GAGAUGA	AK011246|Rb1|19645|retinoblastoma 1	BC096525|Rb1|19645|retinoblastoma 1	NM_009029|Rb1|19645|retinoblastoma 1
mm9_v1_chr15_+_37162790_37162813	0.471546	GAGAUGA	AK002633|Grhl2|252973|grainyhead-like 2 (Drosophila)	NM_026496|Grhl2|252973|grainyhead-like 2 (Drosophila)
mm9_v1_chr1_-_186635140_186635191	0.468669	GAGAUGA	NM_001081361|Mosc1|66112|MOCO sulphurase C-terminal domain containing 1
mm9_v1_chr4_-_58219368_58219467	0.467014	GAGAUGA	AK052699|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	AF206329|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	NM_022814|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm9_v1_chr9_-_20619426_20619525	0.466087	GAGAUGA	BC024367|Col5a3|53867|collagen, type V, alpha 3	BC138417|Col5a3|53867|collagen, type V, alpha 3	BC138419|Col5a3|53867|collagen, type V, alpha 3	BC145269|Col5a3|53867|collagen, type V, alpha 3	AF176645|Col5a3|53867|collagen, type V, alpha 3	NM_016919|Col5a3|53867|collagen, type V, alpha 3	AB040491|Col5a3|53867|collagen, type V, alpha 3
mm9_v1_chr11_-_100711785_100712037	0.464372	GAGAUGA	Z48539|Stat5b|20851|signal transducer and activator of transcription 5B	BC024319|Stat5b|20851|signal transducer and activator of transcription 5B	AK154664|Stat5b|20851|signal transducer and activator of transcription 5B	AK150098|Stat5b|20851|signal transducer and activator of transcription 5B	NM_001113563|Stat5b|20851|signal transducer and activator of transcription 5B	AK045531|Stat5b|20851|signal transducer and activator of transcription 5B
mm9_v1_chr9_+_69245718_69245804	0.463255	GAGAUGA	AK163917|Narg2|93697|NMDA receptor-regulated gene 2	AK042916|Narg2|93697|NMDA receptor-regulated gene 2	AK046121|Narg2|93697|NMDA receptor-regulated gene 2	AK041772|Narg2|93697|NMDA receptor-regulated gene 2	AK134186|Narg2|93697|NMDA receptor-regulated gene 2	AY244558|Narg2|93697|NMDA receptor-regulated gene 2	BC068183|Narg2|93697|NMDA receptor-regulated gene 2	NM_145618|Narg2|93697|NMDA receptor-regulated gene 2
mm9_v1_chr4_-_131628011_131628011	0.458725	GAGAUGA	L00919|Epb4.1|269587|erythrocyte protein band 4.1	NM_183428|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr12_+_113917038_113917088	0.452519	GAGAUGA	BC046387|Zbtb42|382639|zinc finger and BTB domain containing 42	NM_001100460|Zbtb42|382639|zinc finger and BTB domain containing 42
mm9_v1_chr1_-_157589156_157589156	0.451928	GAGAUGA	BC049834|Lhx4|16872|LIM homeobox protein 4	NM_010712|Lhx4|16872|LIM homeobox protein 4
mm9_v1_chr14_+_52604434_52604640	0.45134	GAGAUGA	AK163945|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	NM_001145921|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	NM_001145922|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	NM_198249|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK134295|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK143527|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK131136|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK147761|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK053592|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	BC059018|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK202688|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK155659|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40
mm9_v1_chr18_-_82862111_82862127	0.450975	GAGAUGA	BC138187|Zfp236|329002|zinc finger protein 236	BC145179|Zfp236|329002|zinc finger protein 236	BC145180|Zfp236|329002|zinc finger protein 236	NM_177832|Zfp236|329002|zinc finger protein 236
mm9_v1_chr3_+_95908422_95908559	0.448469	GAGAUGA	AK044701|Otud7b|229603|OTU domain containing 7B	NM_001025613|Otud7b|229603|OTU domain containing 7B	NM_001025614|Otud7b|229603|OTU domain containing 7B	AK078327|Otud7b|229603|OTU domain containing 7B	BC141397|Otud7b|229603|OTU domain containing 7B	BC141398|Otud7b|229603|OTU domain containing 7B
mm9_v1_chrX_+_132758579_132758588	0.448234	GAGAUGA	NM_001127169|Tceal7|100040972|transcription elongation factor A (SII)-like 7	AK003800|Tceal7|100040972|transcription elongation factor A (SII)-like 7
mm9_v1_chr2_+_110561733_110561771	0.44503	GAGAUGA	AY198336|Muc15|269328|mucin 15	AK052840|Muc15|269328|mucin 15	AK142590|Muc15|269328|mucin 15	NM_172979|Muc15|269328|mucin 15	BC094506|Muc15|269328|mucin 15	BC116796|Muc15|269328|mucin 15	BC119176|Muc15|269328|mucin 15
mm9_v1_chr3_+_97432726_97432760	0.444904	GAGAUGA	AK162951|Fmo5|14263|flavin containing monooxygenase 5	NM_001161763|Fmo5|14263|flavin containing monooxygenase 5	AK147040|Fmo5|14263|flavin containing monooxygenase 5	NM_001161765|Fmo5|14263|flavin containing monooxygenase 5	NM_010232|Fmo5|14263|flavin containing monooxygenase 5
mm9_v1_chr2_+_179777187_179777250	0.44171	GAGAUGA	NM_178750|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1	BC054730|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1	AK133944|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1
mm9_v1_chr19_+_21727795_21727859	0.429802	GAGAUGA	NM_146096|Fam108b|226016|family with sequence similarity 108, member B	AK017641|Fam108b|226016|family with sequence similarity 108, member B
mm9_v1_chr4_-_70195952_70195978	0.427514	GAGAUGA	AK122378|Megf9|230316|multiple EGF-like-domains 9	AK035987|Megf9|230316|multiple EGF-like-domains 9	AK039319|Megf9|230316|multiple EGF-like-domains 9	AK162891|Megf9|230316|multiple EGF-like-domains 9	NM_172694|Megf9|230316|multiple EGF-like-domains 9	AK170687|Megf9|230316|multiple EGF-like-domains 9
mm9_v1_chr11_-_106134024_106134359	0.419392	GAGAUGA	AK166123|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	AK159259|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	NM_001130187|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
mm9_v1_chr7_-_96666081_96666131	0.41849	GAGAUGA	NM_029614|Prss23|76453|protease, serine, 23
mm9_v1_chr2_+_4638844_4638934	0.41168	GAGAUGA	AK053896|Bend7|209645|BEN domain containing 7	NM_001190400|Bend7|209645|BEN domain containing 7	NM_178663|Bend7|209645|BEN domain containing 7	AK042822|Bend7|209645|BEN domain containing 7
mm9_v1_chr11_-_106128935_106128945	0.410397	GAGAUGA	BC005732|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	NM_031878|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
mm9_v1_chr7_+_88202481_88202485	0.409604	GAGAUGA	AF338872|Alpk3|116904|alpha-kinase 3	NM_054085|Alpk3|116904|alpha-kinase 3
mm9_v1_chr3_+_68494565_68494565	0.406737	GAGAUGA	NM_001159424|Il12a|16159|interleukin 12a
mm9_v1_chr2_-_93303102_93303102	0.402542	GAGAUGA	AK135381|Cd82|12521|CD82 antigen	AK146912|Cd82|12521|CD82 antigen	NM_001136055|Cd82|12521|CD82 antigen
mm9_v1_chr8_+_107694536_107694875	0.402181	GAGAUGA	AK089094|Cbfb|12400|core binding factor beta	NM_001161456|Cbfb|12400|core binding factor beta	NM_001161457|Cbfb|12400|core binding factor beta	NM_001161458|Cbfb|12400|core binding factor beta	NM_022309|Cbfb|12400|core binding factor beta	D14570|Cbfb|12400|core binding factor beta	D14571|Cbfb|12400|core binding factor beta	D14572|Cbfb|12400|core binding factor beta	BC026749|Cbfb|12400|core binding factor beta	BC040752|Cbfb|12400|core binding factor beta	BC006763|Cbfb|12400|core binding factor beta	L03305|Cbfb|12400|core binding factor beta	L03306|Cbfb|12400|core binding factor beta
mm9_v1_chr3_-_95054970_95055114	0.400418	GAGAUGA	AK142472|Bnipl|171388|BCL2/adenovirus E1B 19kD interacting protein like	BC005659|Bnipl|171388|BCL2/adenovirus E1B 19kD interacting protein like	NM_001168356|Bnipl|171388|BCL2/adenovirus E1B 19kD interacting protein like	NM_134253|Bnipl|171388|BCL2/adenovirus E1B 19kD interacting protein like
mm9_v1_chr5_-_9161670_9161791	0.400109	GAGAUGA	AK046201|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK078015|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	BC060109|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK029147|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK031887|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	BC045141|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	BC010272|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	U70017|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK040107|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK145803|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK033208|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK039563|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK030508|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK160595|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	NM_001110327|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	NM_011806|Dmtf1|23857|cyclin D binding myb-like transcription factor 1
mm9_v1_chr17_+_87682206_87682305	0.397474	GAGAUGA	AK040578|Ttc7|225049|tetratricopeptide repeat domain 7	NM_028639|Ttc7|225049|tetratricopeptide repeat domain 7	AK050263|Ttc7|225049|tetratricopeptide repeat domain 7	AK090252|Ttc7|225049|tetratricopeptide repeat domain 7	AK153704|Ttc7|225049|tetratricopeptide repeat domain 7	AK080284|Ttc7|225049|tetratricopeptide repeat domain 7	AK040610|Ttc7|225049|tetratricopeptide repeat domain 7	AK004107|Ttc7|225049|tetratricopeptide repeat domain 7
mm9_v1_chr8_-_108457731_108457761	0.397152	GAGAUGA	AK220246|Ctrl|109660|chymotrypsin-like	AK007333|Ctrl|109660|chymotrypsin-like	AK009019|Ctrl|109660|chymotrypsin-like	BC087918|Ctrl|109660|chymotrypsin-like	AB016228|Ctrl|109660|chymotrypsin-like	NM_023182|Ctrl|109660|chymotrypsin-like
mm9_v1_chr15_+_102236709_102236810	0.396328	GAGAUGA	EF200005|Sp1|20683|trans-acting transcription factor 1	NM_013672|Sp1|20683|trans-acting transcription factor 1	AF022363|Sp1|20683|trans-acting transcription factor 1	S79832|Sp1|20683|trans-acting transcription factor 1	AF062566|Sp1|20683|trans-acting transcription factor 1
mm9_v1_chr19_+_11986887_11986895	0.395285	GAGAUGA	AK150301|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK170918|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	NM_172635|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK154102|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)
mm9_v1_chr1_+_36568707_36568722	0.392832	GAGAUGA	NM_001039551|Cnnm3|94218|cyclin M3	NM_053186|Cnnm3|94218|cyclin M3
mm9_v1_chr2_+_150043834_150043834	0.392569	GAGAUGA	AB470966|Zfp937|245174|zinc finger protein 937	NM_001142411|Zfp937|245174|zinc finger protein 937
mm9_v1_chr13_-_94269616_94269653	0.391662	GAGAUGA	BC069906|Jmy|57748|junction-mediating and regulatory protein	BC090835|Jmy|57748|junction-mediating and regulatory protein	NM_021310|Jmy|57748|junction-mediating and regulatory protein
mm9_v1_chr3_-_95021614_95021863	0.390741	GAGAUGA	BC150160|Gabpb2|213054|GA repeat binding protein, beta 2	BC150482|Gabpb2|213054|GA repeat binding protein, beta 2	AK007509|Gabpb2|213054|GA repeat binding protein, beta 2	AK163939|Gabpb2|213054|GA repeat binding protein, beta 2	AK030849|Gabpb2|213054|GA repeat binding protein, beta 2	AK036692|Gabpb2|213054|GA repeat binding protein, beta 2	AK087979|Gabpb2|213054|GA repeat binding protein, beta 2	AK086817|Gabpb2|213054|GA repeat binding protein, beta 2	AK141382|Gabpb2|213054|GA repeat binding protein, beta 2	NM_029885|Gabpb2|213054|GA repeat binding protein, beta 2	NM_172512|Gabpb2|213054|GA repeat binding protein, beta 2
mm9_v1_chr4_+_41082993_41083094	0.38951	GAGAUGA	AK003550|Ube2r2|67615|ubiquitin-conjugating enzyme E2R 2	AK075703|Ube2r2|67615|ubiquitin-conjugating enzyme E2R 2	BC011112|Ube2r2|67615|ubiquitin-conjugating enzyme E2R 2	AK075714|Ube2r2|67615|ubiquitin-conjugating enzyme E2R 2	NM_026275|Ube2r2|67615|ubiquitin-conjugating enzyme E2R 2	AJ240086|Ube2r2|67615|ubiquitin-conjugating enzyme E2R 2
mm9_v1_chr3_+_68495345_68495448	0.38899	GAGAUGA	M86672|Il12a|16159|interleukin 12a	NM_008351|Il12a|16159|interleukin 12a	BC116851|Il12a|16159|interleukin 12a	BC116855|Il12a|16159|interleukin 12a	AF128210|Il12a|16159|interleukin 12a	AF128211|Il12a|16159|interleukin 12a	AF128212|Il12a|16159|interleukin 12a	AF128213|Il12a|16159|interleukin 12a
mm9_v1_chr6_-_148894953_148895000	0.386326	GAGAUGA	BC076599|Fam60a|56306|family with sequence similarity 60, member A	NM_019643|Fam60a|56306|family with sequence similarity 60, member A	AK166569|Fam60a|56306|family with sequence similarity 60, member A	AK145384|Fam60a|56306|family with sequence similarity 60, member A
mm9_v1_chr3_+_122432075_122432112	0.383871	GAGAUGA	AF541937|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	NM_153422|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	BC119137|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	BC120486|Pde5a|242202|phosphodiesterase 5A, cGMP-specific
mm9_v1_chr6_-_119494295_119494364	0.383601	GAGAUGA	BC051406|Wnt5b|22419|wingless-related MMTV integration site 5B	AK013218|Wnt5b|22419|wingless-related MMTV integration site 5B	NM_009525|Wnt5b|22419|wingless-related MMTV integration site 5B
mm9_v1_chr9_+_53345151_53345154	0.378832	GAGAUGA	AK080294|Npat|244879|nuclear protein in the AT region	NM_001081152|Npat|244879|nuclear protein in the AT region
mm9_v1_chr9_-_70504934_70505009	0.378648	GAGAUGA	BC058683|Fam63b|235461|family with sequence similarity 63, member B	AK046623|Fam63b|235461|family with sequence similarity 63, member B	BC049357|Fam63b|235461|family with sequence similarity 63, member B	AK046403|Fam63b|235461|family with sequence similarity 63, member B	AK035930|Fam63b|235461|family with sequence similarity 63, member B	NM_172772|Fam63b|235461|family with sequence similarity 63, member B	AK220158|Fam63b|235461|family with sequence similarity 63, member B
mm9_v1_chr6_+_71272683_71272829	0.378013	GAGAUGA	U34882|Cd8b1|12526|CD8 antigen, beta chain 1	AK088372|Cd8b1|12526|CD8 antigen, beta chain 1	AK088649|Cd8b1|12526|CD8 antigen, beta chain 1	X07698|Cd8b1|12526|CD8 antigen, beta chain 1	AK169581|Cd8b1|12526|CD8 antigen, beta chain 1	M17534|Cd8b1|12526|CD8 antigen, beta chain 1	NM_009858|Cd8b1|12526|CD8 antigen, beta chain 1	M16799|Cd8b1|12526|CD8 antigen, beta chain 1	AK162993|Cd8b1|12526|CD8 antigen, beta chain 1	M19504|Cd8b1|12526|CD8 antigen, beta chain 1	AK154055|Cd8b1|12526|CD8 antigen, beta chain 1	AK087944|Cd8b1|12526|CD8 antigen, beta chain 1
mm9_v1_chr3_+_55586431_55586482	0.37545	GAGAUGA	NM_010750|Mab21l1|17116|mab-21-like 1 (C. elegans)	AK043552|Mab21l1|17116|mab-21-like 1 (C. elegans)	AF040945|Mab21l1|17116|mab-21-like 1 (C. elegans)	AF228913|Mab21l1|17116|mab-21-like 1 (C. elegans)	AK032114|Mab21l1|17116|mab-21-like 1 (C. elegans)	BC014750|Mab21l1|17116|mab-21-like 1 (C. elegans)
mm9_v1_chr6_-_58974400_58974495	0.371707	GAGAUGA	BC005554|Fam13a|58909|family with sequence similarity 13, member A	BC060978|Fam13a|58909|family with sequence similarity 13, member A	AK052421|Fam13a|58909|family with sequence similarity 13, member A	BC054053|Fam13a|58909|family with sequence similarity 13, member A	AJ510136|Fam13a|58909|family with sequence similarity 13, member A	AK054311|Fam13a|58909|family with sequence similarity 13, member A	BC080861|Fam13a|58909|family with sequence similarity 13, member A	NM_153574|Fam13a|58909|family with sequence similarity 13, member A
mm9_v1_chr16_+_97578333_97578399	0.371135	GAGAUGA	NM_019517|Bace2|56175|beta-site APP-cleaving enzyme 2	AK052309|Bace2|56175|beta-site APP-cleaving enzyme 2	AK078770|Bace2|56175|beta-site APP-cleaving enzyme 2	BC120773|Bace2|56175|beta-site APP-cleaving enzyme 2	BC131947|Bace2|56175|beta-site APP-cleaving enzyme 2	AF216310|Bace2|56175|beta-site APP-cleaving enzyme 2	AK165036|Bace2|56175|beta-site APP-cleaving enzyme 2
mm9_v1_chr12_+_29360060_29360071	0.369877	GAGAUGA	BC005695|Adi1|104923|acireductone dioxygenase 1	NM_134052|Adi1|104923|acireductone dioxygenase 1
mm9_v1_chr2_-_93302621_93302662	0.368988	GAGAUGA	AK168515|Cd82|12521|CD82 antigen	BC132559|Cd82|12521|CD82 antigen	BC132565|Cd82|12521|CD82 antigen	AK152871|Cd82|12521|CD82 antigen	AK153070|Cd82|12521|CD82 antigen	NM_007656|Cd82|12521|CD82 antigen
mm9_v1_chr9_-_22112081_22112120	0.365083	GAGAUGA	BC005471|Zfp810|235050|zinc finger protein 810	NM_145612|Zfp810|235050|zinc finger protein 810	AK032556|Zfp810|235050|zinc finger protein 810
mm9_v1_chr4_-_57314708_57314708	0.363027	GAGAUGA	AK052928|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3	NM_011207|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3
mm9_v1_chr17_+_48594225_48594270	0.362764	GAGAUGA	AK144925|Unc5cl|76589|unc-5 homolog C (C. elegans)-like	NM_152823|Unc5cl|76589|unc-5 homolog C (C. elegans)-like	BC095959|Unc5cl|76589|unc-5 homolog C (C. elegans)-like
mm9_v1_chrX_+_68468175_68468259	0.361242	GAGAUGA	AK149997|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164191|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164192|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164193|Mtm1|17772|X-linked myotubular myopathy gene 1	AK171475|Mtm1|17772|X-linked myotubular myopathy gene 1	AK031794|Mtm1|17772|X-linked myotubular myopathy gene 1	AK166452|Mtm1|17772|X-linked myotubular myopathy gene 1	BC090984|Mtm1|17772|X-linked myotubular myopathy gene 1	BC051022|Mtm1|17772|X-linked myotubular myopathy gene 1	AK032870|Mtm1|17772|X-linked myotubular myopathy gene 1	BC066847|Mtm1|17772|X-linked myotubular myopathy gene 1	AF073996|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_019926|Mtm1|17772|X-linked myotubular myopathy gene 1	AK166759|Mtm1|17772|X-linked myotubular myopathy gene 1
mm9_v1_chrX_+_68463941_68463941	0.355495	GAGAUGA	AK016445|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164190|Mtm1|17772|X-linked myotubular myopathy gene 1
mm9_v1_chr17_-_10512217_10512250	0.353596	GAGAUGA	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr14_+_49791899_49792002	0.351268	GAGAUGA	NM_001081430|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	AK015640|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC157931|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC158065|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC172029|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit
mm9_v1_chr14_-_68551487_68551628	0.350974	GAGAUGA	AK147975|Dock5|68813|dedicator of cytokinesis 5	BC158046|Dock5|68813|dedicator of cytokinesis 5	BC158135|Dock5|68813|dedicator of cytokinesis 5	BC158138|Dock5|68813|dedicator of cytokinesis 5	AK053909|Dock5|68813|dedicator of cytokinesis 5	NM_177780|Dock5|68813|dedicator of cytokinesis 5
mm9_v1_chr13_-_23461025_23461082	0.350775	GAGAUGA	BC043711|Zfp322a|218100|zinc finger protein 322A	AK162608|Zfp322a|218100|zinc finger protein 322A	AK170259|Zfp322a|218100|zinc finger protein 322A	AK170525|Zfp322a|218100|zinc finger protein 322A	NM_001111107|Zfp322a|218100|zinc finger protein 322A	NM_172586|Zfp322a|218100|zinc finger protein 322A	AK036302|Zfp322a|218100|zinc finger protein 322A	AK036877|Zfp322a|218100|zinc finger protein 322A
mm9_v1_chr11_+_76759157_76759353	0.35042	GAGAUGA	NM_178645|Blmh|104184|bleomycin hydrolase	AK029274|Blmh|104184|bleomycin hydrolase	AK049461|Blmh|104184|bleomycin hydrolase	AK051441|Blmh|104184|bleomycin hydrolase	AK150438|Blmh|104184|bleomycin hydrolase	BC027403|Blmh|104184|bleomycin hydrolase	AK040799|Blmh|104184|bleomycin hydrolase	BC027362|Blmh|104184|bleomycin hydrolase	BC024090|Blmh|104184|bleomycin hydrolase	AK053872|Blmh|104184|bleomycin hydrolase	AK150896|Blmh|104184|bleomycin hydrolase	AK167325|Blmh|104184|bleomycin hydrolase	AK035228|Blmh|104184|bleomycin hydrolase	BC027037|Blmh|104184|bleomycin hydrolase	AK197894|Blmh|104184|bleomycin hydrolase	AK199579|Blmh|104184|bleomycin hydrolase
mm9_v1_chr1_+_43155550_43155613	0.346639	GAGAUGA	BC006931|AI597479|98404|expressed sequence AI597479	NM_133818|AI597479|98404|expressed sequence AI597479	AK081372|AI597479|98404|expressed sequence AI597479
mm9_v1_chr15_-_76352331_76352558	0.345891	GAGAUGA	BC057562|Scrt1|170729|scratch homolog 1, zinc finger protein (Drosophila)	BC089316|Scrt1|170729|scratch homolog 1, zinc finger protein (Drosophila)	NM_130893|Scrt1|170729|scratch homolog 1, zinc finger protein (Drosophila)
mm9_v1_chr3_-_104764503_104764638	0.344243	GAGAUGA	AF070988|Wnt2b|22414|wingless related MMTV integration site 2b	BC119276|Wnt2b|22414|wingless related MMTV integration site 2b	BC119278|Wnt2b|22414|wingless related MMTV integration site 2b	AK035653|Wnt2b|22414|wingless related MMTV integration site 2b	NM_009520|Wnt2b|22414|wingless related MMTV integration site 2b
mm9_v1_chr11_+_88860710_88860807	0.343742	GAGAUGA	AK169562|Trim25|217069|tripartite motif-containing 25	NM_009546|Trim25|217069|tripartite motif-containing 25	AK154533|Trim25|217069|tripartite motif-containing 25	BC006908|Trim25|217069|tripartite motif-containing 25	BC034276|Trim25|217069|tripartite motif-containing 25	AK160898|Trim25|217069|tripartite motif-containing 25	AK172555|Trim25|217069|tripartite motif-containing 25	D63902|Trim25|217069|tripartite motif-containing 25
mm9_v1_chr2_+_154959216_154959300	0.341796	GAGAUGA	NM_008395|Itch|16396|itchy, E3 ubiquitin protein ligase	AK082003|Itch|16396|itchy, E3 ubiquitin protein ligase	AK163006|Itch|16396|itchy, E3 ubiquitin protein ligase	AK141800|Itch|16396|itchy, E3 ubiquitin protein ligase	AK037940|Itch|16396|itchy, E3 ubiquitin protein ligase	BC062934|Itch|16396|itchy, E3 ubiquitin protein ligase	AK020167|Itch|16396|itchy, E3 ubiquitin protein ligase	AK220164|Itch|16396|itchy, E3 ubiquitin protein ligase	AK048303|Itch|16396|itchy, E3 ubiquitin protein ligase	BC064678|Itch|16396|itchy, E3 ubiquitin protein ligase	AF037454|Itch|16396|itchy, E3 ubiquitin protein ligase
mm9_v1_chr6_+_49269351_49269403	0.340513	GAGAUGA	AK018135|Ccdc126|57895|coiled-coil domain containing 126	NM_175098|Ccdc126|57895|coiled-coil domain containing 126	BC117837|Ccdc126|57895|coiled-coil domain containing 126
mm9_v1_chr4_-_120498198_120498325	0.337003	GAGAUGA	AK156353|Nfyc|18046|nuclear transcription factor-Y gamma	BC020117|Nfyc|18046|nuclear transcription factor-Y gamma	BC085261|Nfyc|18046|nuclear transcription factor-Y gamma	AK011327|Nfyc|18046|nuclear transcription factor-Y gamma	NM_008692|Nfyc|18046|nuclear transcription factor-Y gamma
mm9_v1_chr2_+_112106470_112106612	0.334981	GAGAUGA	BC062099|Slc12a6|107723|solute carrier family 12, member 6	NM_133649|Slc12a6|107723|solute carrier family 12, member 6
mm9_v1_chrX_-_75829120_75829237	0.332333	GAGAUGA	BC032926|Prrg1|546336|proline rich Gla (G-carboxyglutamic acid) 1	NM_001164275|Prrg1|546336|proline rich Gla (G-carboxyglutamic acid) 1	AK008151|Prrg1|546336|proline rich Gla (G-carboxyglutamic acid) 1	AK083396|Prrg1|546336|proline rich Gla (G-carboxyglutamic acid) 1	AK135895|Prrg1|546336|proline rich Gla (G-carboxyglutamic acid) 1	AK161802|Prrg1|546336|proline rich Gla (G-carboxyglutamic acid) 1	NM_027322|Prrg1|546336|proline rich Gla (G-carboxyglutamic acid) 1
mm9_v1_chr3_+_103083215_103083215	0.332222	GAGAUGA	AY458590|Trim33|94093|tripartite motif-containing 33	NM_001079830|Trim33|94093|tripartite motif-containing 33	NM_053170|Trim33|94093|tripartite motif-containing 33
mm9_v1_chr6_-_32538191_32538191	0.330702	GAGAUGA	AB073228|Plxna4|243743|plexin A4	NM_175750|Plxna4|243743|plexin A4
mm9_v1_chr8_-_3854285_3854307	0.322302	GAGAUGA	AF373412|Cd209e|170780|CD209e antigen	BC107188|Cd209e|170780|CD209e antigen	BC107189|Cd209e|170780|CD209e antigen	NM_130905|Cd209e|170780|CD209e antigen	AK040917|Cd209e|170780|CD209e antigen
mm9_v1_chr6_-_52177368_52177368	0.320308	GAGAUGA	AB005457|Hoxa9|15405|homeobox A9	NM_010456|Hoxa9|15405|homeobox A9
mm9_v1_chr5_+_142877419_142877473	0.32024	GAGAUGA	NM_199068|Foxk1|17425|forkhead box K1	AK147375|Foxk1|17425|forkhead box K1	L26507|Foxk1|17425|forkhead box K1	U95016|Foxk1|17425|forkhead box K1	BC060238|Foxk1|17425|forkhead box K1
mm9_v1_chr15_+_38837839_38837957	0.315427	GAGAUGA	NM_008056|Fzd6|14368|frizzled homolog 6 (Drosophila)	BC026150|Fzd6|14368|frizzled homolog 6 (Drosophila)	AK088399|Fzd6|14368|frizzled homolog 6 (Drosophila)
mm9_v1_chr15_-_88971039_88971132	0.314689	GAGAUGA	BC021640|Mapk12|29857|mitogen-activated protein kinase 12	Y13439|Mapk12|29857|mitogen-activated protein kinase 12	AK011286|Mapk12|29857|mitogen-activated protein kinase 12	AK165741|Mapk12|29857|mitogen-activated protein kinase 12	NM_013871|Mapk12|29857|mitogen-activated protein kinase 12
mm9_v1_chr13_-_73815446_73815470	0.314187	GAGAUGA	BC010748|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AF075262|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AF075263|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AF075264|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AF075265|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AF075266|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AF075267|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AK085258|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AK085473|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AK128907|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	NM_001040692|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	NM_001136087|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	NM_001168643|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	NM_001168644|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	NM_001168645|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	NM_001168646|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18
mm9_v1_chr4_+_45031496_45031534	0.313316	GAGAUGA	NM_022811|Polr1e|64424|polymerase (RNA) I polypeptide E	AK083948|Polr1e|64424|polymerase (RNA) I polypeptide E	AK132556|Polr1e|64424|polymerase (RNA) I polypeptide E	D14336|Polr1e|64424|polymerase (RNA) I polypeptide E	BC034783|Polr1e|64424|polymerase (RNA) I polypeptide E	AK050780|Polr1e|64424|polymerase (RNA) I polypeptide E
mm9_v1_chr15_+_38837818_38837834	0.313115	GAGAUGA	NM_001162494|Fzd6|14368|frizzled homolog 6 (Drosophila)
mm9_v1_chr11_-_60034046_60034130	0.312253	GAGAUGA	AK154424|Srebf1|20787|sterol regulatory element binding transcription factor 1	BC056922|Srebf1|20787|sterol regulatory element binding transcription factor 1	AK150052|Srebf1|20787|sterol regulatory element binding transcription factor 1	AK052628|Srebf1|20787|sterol regulatory element binding transcription factor 1	AK169607|Srebf1|20787|sterol regulatory element binding transcription factor 1	NM_011480|Srebf1|20787|sterol regulatory element binding transcription factor 1
mm9_v1_chr7_-_117129702_117129846	0.308968	GAGAUGA	AK038953|Tmem41b|233724|transmembrane protein 41B	AK165226|Tmem41b|233724|transmembrane protein 41B	AK075726|Tmem41b|233724|transmembrane protein 41B	AK029327|Tmem41b|233724|transmembrane protein 41B	AK053588|Tmem41b|233724|transmembrane protein 41B	AK078357|Tmem41b|233724|transmembrane protein 41B	AK090100|Tmem41b|233724|transmembrane protein 41B	AK139961|Tmem41b|233724|transmembrane protein 41B	AK166427|Tmem41b|233724|transmembrane protein 41B	AK166455|Tmem41b|233724|transmembrane protein 41B	NM_153525|Tmem41b|233724|transmembrane protein 41B	BC027103|Tmem41b|233724|transmembrane protein 41B	AK172876|Tmem41b|233724|transmembrane protein 41B	BC026515|Tmem41b|233724|transmembrane protein 41B	AK033997|Tmem41b|233724|transmembrane protein 41B	AK035266|Tmem41b|233724|transmembrane protein 41B	AK162557|Tmem41b|233724|transmembrane protein 41B	AK150353|Tmem41b|233724|transmembrane protein 41B	AK153048|Tmem41b|233724|transmembrane protein 41B
mm9_v1_chr6_-_83391623_83391671	0.308251	GAGAUGA	AK044758|Tet3|194388|tet oncogene family member 3	AK046543|Tet3|194388|tet oncogene family member 3	AK046552|Tet3|194388|tet oncogene family member 3	AK046553|Tet3|194388|tet oncogene family member 3	NM_183138|Tet3|194388|tet oncogene family member 3
mm9_v1_chr18_+_89366818_89366986	0.30543	GAGAUGA	NM_001039149|Cd226|225825|CD226 antigen	NM_178687|Cd226|225825|CD226 antigen	BC132422|Cd226|225825|CD226 antigen	BC138769|Cd226|225825|CD226 antigen	BC145410|Cd226|225825|CD226 antigen	BC145411|Cd226|225825|CD226 antigen	BC051526|Cd226|225825|CD226 antigen	AK140349|Cd226|225825|CD226 antigen	AF416980|Cd226|225825|CD226 antigen	AF421198|Cd226|225825|CD226 antigen	AF421199|Cd226|225825|CD226 antigen	AF421200|Cd226|225825|CD226 antigen
mm9_v1_chr12_+_71926429_71926675	0.301385	GAGAUGA	BC053929|Frmd6|319710|FERM domain containing 6	NM_028127|Frmd6|319710|FERM domain containing 6	AK054457|Frmd6|319710|FERM domain containing 6
mm9_v1_chr12_-_85749901_85749994	0.30031	GAGAUGA	AK085871|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK088455|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK081435|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK037736|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK163688|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK031581|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK036641|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK045828|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK080265|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	NM_001026214|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	NM_007647|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5
mm9_v1_chr4_-_120504175_120504179	0.298442	GAGAUGA	BC053723|Nfyc|18046|nuclear transcription factor-Y gamma	NM_001048168|Nfyc|18046|nuclear transcription factor-Y gamma
mm9_v1_chr2_-_120229789_120229851	0.298222	GAGAUGA	AK086738|Tmem87a|211499|transmembrane protein 87A	BC004047|Tmem87a|211499|transmembrane protein 87A	AK044591|Tmem87a|211499|transmembrane protein 87A	AK134268|Tmem87a|211499|transmembrane protein 87A	AK137137|Tmem87a|211499|transmembrane protein 87A	BC027354|Tmem87a|211499|transmembrane protein 87A	AK088559|Tmem87a|211499|transmembrane protein 87A	NM_001110496|Tmem87a|211499|transmembrane protein 87A	NM_001110497|Tmem87a|211499|transmembrane protein 87A	NM_173734|Tmem87a|211499|transmembrane protein 87A
mm9_v1_chr19_-_36131650_36131849	0.295232	GAGAUGA	AK138150|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	FM178515|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	FM178516|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	BC116986|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	Z23107|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	AK139197|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	NM_008315|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7
mm9_v1_chr9_+_121669121_121669172	0.293872	GAGAUGA	NM_001166644|Zfp651|270210|zinc finger protein 651
mm9_v1_chr3_+_94641479_94641499	0.29266	GAGAUGA	NM_001165948|Pogz|229584|pogo transposable element with ZNF domain	NM_172683|Pogz|229584|pogo transposable element with ZNF domain	BC065134|Pogz|229584|pogo transposable element with ZNF domain	BC066108|Pogz|229584|pogo transposable element with ZNF domain
mm9_v1_chr18_-_61336629_61336741	0.290864	GAGAUGA	BC079580|Hmgxb3|106894|HMG box domain containing 3	AK088852|Hmgxb3|106894|HMG box domain containing 3	AK034086|Hmgxb3|106894|HMG box domain containing 3	AK041866|Hmgxb3|106894|HMG box domain containing 3	AK144993|Hmgxb3|106894|HMG box domain containing 3	NM_178277|Hmgxb3|106894|HMG box domain containing 3	AB045322|Hmgxb3|106894|HMG box domain containing 3	NM_134134|Hmgxb3|106894|HMG box domain containing 3
mm9_v1_chr3_-_146278561_146278561	0.288264	GAGAUGA	AK079224|Dnase2b|56629|deoxyribonuclease II beta	NM_019957|Dnase2b|56629|deoxyribonuclease II beta
mm9_v1_chr11_+_62094922_62095025	0.288103	GAGAUGA	AK008442|Ttc19|72795|tetratricopeptide repeat domain 19	NM_028360|Ttc19|72795|tetratricopeptide repeat domain 19	NM_029704|Ttc19|72795|tetratricopeptide repeat domain 19	AK034075|Ttc19|72795|tetratricopeptide repeat domain 19
mm9_v1_chr11_-_78311204_78311255	0.286744	GAGAUGA	BC058534|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	BC080850|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	NM_001168521|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	NM_172795|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1
mm9_v1_chr17_+_8358382_8358453	0.284177	GAGAUGA	AK016110|Fgfr1op|75296|Fgfr1 oncogene partner	NM_001197046|Fgfr1op|75296|Fgfr1 oncogene partner	NM_201230|Fgfr1op|75296|Fgfr1 oncogene partner	AK029470|Fgfr1op|75296|Fgfr1 oncogene partner	BC108331|Fgfr1op|75296|Fgfr1 oncogene partner	BC080717|Fgfr1op|75296|Fgfr1 oncogene partner	AK031261|Fgfr1op|75296|Fgfr1 oncogene partner	BC050774|Fgfr1op|75296|Fgfr1 oncogene partner	AK050389|Fgfr1op|75296|Fgfr1 oncogene partner	BC058804|Fgfr1op|75296|Fgfr1 oncogene partner	AK028778|Fgfr1op|75296|Fgfr1 oncogene partner
mm9_v1_chr14_+_119337150_119337225	0.281753	GAGAUGA	NM_008929|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3	AK146097|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3	AK148270|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3	BC013766|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3	U28423|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3
mm9_v1_chr8_-_3748926_3748983	0.281298	GAGAUGA	AK171639|Cd209a|170786|CD209a antigen	AF373408|Cd209a|170786|CD209a antigen	AF374470|Cd209a|170786|CD209a antigen	BC111095|Cd209a|170786|CD209a antigen	AK054139|Cd209a|170786|CD209a antigen	AY049062|Cd209a|170786|CD209a antigen	NM_133238|Cd209a|170786|CD209a antigen
mm9_v1_chr11_+_49607656_49607690	0.279979	GAGAUGA	NM_013529|Gfpt2|14584|glutamine fructose-6-phosphate transaminase 2	AK053670|Gfpt2|14584|glutamine fructose-6-phosphate transaminase 2	BC031928|Gfpt2|14584|glutamine fructose-6-phosphate transaminase 2	AB016780|Gfpt2|14584|glutamine fructose-6-phosphate transaminase 2
mm9_v1_chr3_+_137286635_137286835	0.279583	GAGAUGA	AK018944|Ddit4l|73284|DNA-damage-inducible transcript 4-like	NM_030143|Ddit4l|73284|DNA-damage-inducible transcript 4-like	AK006617|Ddit4l|73284|DNA-damage-inducible transcript 4-like	AK053333|Ddit4l|73284|DNA-damage-inducible transcript 4-like	BC038131|Ddit4l|73284|DNA-damage-inducible transcript 4-like	AF335325|Ddit4l|73284|DNA-damage-inducible transcript 4-like
mm9_v1_chr2_+_34287544_34287544	0.277259	GAGAUGA	BC090644|Mapkap1|227743|mitogen-activated protein kinase associated protein 1	NM_177345|Mapkap1|227743|mitogen-activated protein kinase associated protein 1
mm9_v1_chr11_-_72225084_72225217	0.273313	GAGAUGA	AK085988|Smtnl2|276829|smoothelin-like 2	BC037993|Smtnl2|276829|smoothelin-like 2	AK051585|Smtnl2|276829|smoothelin-like 2	NM_177776|Smtnl2|276829|smoothelin-like 2
mm9_v1_chr16_+_65815758_65815952	0.273249	GAGAUGA	NM_028572|Vgll3|73569|vestigial like 3 (Drosophila)	BC042696|Vgll3|73569|vestigial like 3 (Drosophila)
mm9_v1_chr8_+_95351212_95351327	0.272662	GAGAUGA	BC070430|Mmp2|17390|matrix metallopeptidase 2	NM_008610|Mmp2|17390|matrix metallopeptidase 2	AK148184|Mmp2|17390|matrix metallopeptidase 2
mm9_v1_chr1_+_137221385_137221392	0.272261	GAGAUGA	AK079173|Lmod1|93689|leiomodin 1 (smooth muscle)	AK133276|Lmod1|93689|leiomodin 1 (smooth muscle)	NM_053106|Lmod1|93689|leiomodin 1 (smooth muscle)
mm9_v1_chr19_-_17431079_17431156	0.268004	GAGAUGA	BC039126|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	AK199888|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	AK045216|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	AK167048|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	D87333|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	NM_173442|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2
mm9_v1_chr9_-_90165508_90165664	0.267447	GAGAUGA	AK089175|Tbc1d2b|67016|TBC1 domain family, member 2B	AK129273|Tbc1d2b|67016|TBC1 domain family, member 2B	AK156788|Tbc1d2b|67016|TBC1 domain family, member 2B	NM_194334|Tbc1d2b|67016|TBC1 domain family, member 2B	AK148382|Tbc1d2b|67016|TBC1 domain family, member 2B
mm9_v1_chr7_+_97591287_97591327	0.264483	GAGAUGA	NM_145151|Crebzf|233490|CREB/ATF bZIP transcription factor
mm9_v1_chr7_-_109713935_109713982	0.261993	GAGAUGA	BC010580|Trim21|20821|tripartite motif-containing 21	L27990|Trim21|20821|tripartite motif-containing 21	AK150484|Trim21|20821|tripartite motif-containing 21	AK171489|Trim21|20821|tripartite motif-containing 21	AK152619|Trim21|20821|tripartite motif-containing 21	AK141294|Trim21|20821|tripartite motif-containing 21	NM_001082552|Trim21|20821|tripartite motif-containing 21	NM_009277|Trim21|20821|tripartite motif-containing 21
mm9_v1_chr6_+_122770201_122770233	0.259646	GAGAUGA	AF253052|Foxj2|60611|forkhead box J2	NM_021899|Foxj2|60611|forkhead box J2	BC038069|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr18_-_77803843_77803942	0.255739	GAGAUGA	DQ465971|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	NM_001164504|Rnf165|225743|ring finger protein 165
mm9_v1_chr9_-_44817429_44817729	0.255349	GAGAUGA	EF474454|Cd3e|12501|CD3 antigen, epsilon polypeptide	GU456631|Cd3e|12501|CD3 antigen, epsilon polypeptide	BC098236|Cd3e|12501|CD3 antigen, epsilon polypeptide	BC028636|Cd3e|12501|CD3 antigen, epsilon polypeptide	BC145926|Cd3e|12501|CD3 antigen, epsilon polypeptide	BC145954|Cd3e|12501|CD3 antigen, epsilon polypeptide	J02990|Cd3e|12501|CD3 antigen, epsilon polypeptide	NM_007648|Cd3e|12501|CD3 antigen, epsilon polypeptide	AK041607|Cd3e|12501|CD3 antigen, epsilon polypeptide
mm9_v1_chr11_+_99769233_99769265	0.255231	GAGAUGA	AK014635|Krtap31-1|70831|keratin associated protein 31-1	NM_027568|Krtap31-1|70831|keratin associated protein 31-1	BC147672|Krtap31-1|70831|keratin associated protein 31-1	BC147678|Krtap31-1|70831|keratin associated protein 31-1
mm9_v1_chr8_-_55615268_55615375	0.254408	GAGAUGA	BC019390|Spcs3|76687|signal peptidase complex subunit 3 homolog (S. cerevisiae)	AK028314|Spcs3|76687|signal peptidase complex subunit 3 homolog (S. cerevisiae)	BC054817|Spcs3|76687|signal peptidase complex subunit 3 homolog (S. cerevisiae)	AK007432|Spcs3|76687|signal peptidase complex subunit 3 homolog (S. cerevisiae)	AK048051|Spcs3|76687|signal peptidase complex subunit 3 homolog (S. cerevisiae)	NM_029701|Spcs3|76687|signal peptidase complex subunit 3 homolog (S. cerevisiae)
mm9_v1_chr6_+_127837606_127837652	0.252178	GAGAUGA	AK087294|Tspan11|68498|tetraspanin 11	NM_026743|Tspan11|68498|tetraspanin 11	AK090022|Tspan11|68498|tetraspanin 11	AK053788|Tspan11|68498|tetraspanin 11
mm9_v1_chr7_+_117205194_117205269	0.251663	GAGAUGA	NM_009281|Zfp143|20841|zinc finger protein 143	AK028056|Zfp143|20841|zinc finger protein 143	AK029078|Zfp143|20841|zinc finger protein 143	BC037658|Zfp143|20841|zinc finger protein 143	AF011758|Zfp143|20841|zinc finger protein 143
mm9_v1_chr11_+_97223851_97223864	0.250723	GAGAUGA	AF424814|Socs7|192157|suppressor of cytokine signaling 7	NM_138657|Socs7|192157|suppressor of cytokine signaling 7
mm9_v1_chr11_-_46202942_46203016	0.247131	GAGAUGA	BC128374|Itk|16428|IL2-inducible T-cell kinase	BC128375|Itk|16428|IL2-inducible T-cell kinase	D14042|Itk|16428|IL2-inducible T-cell kinase	BC028478|Itk|16428|IL2-inducible T-cell kinase	AK020772|Itk|16428|IL2-inducible T-cell kinase	AK079693|Itk|16428|IL2-inducible T-cell kinase	AK153613|Itk|16428|IL2-inducible T-cell kinase	AK153692|Itk|16428|IL2-inducible T-cell kinase	L05631|Itk|16428|IL2-inducible T-cell kinase	L10628|Itk|16428|IL2-inducible T-cell kinase	AK083380|Itk|16428|IL2-inducible T-cell kinase	L00619|Itk|16428|IL2-inducible T-cell kinase	NM_010583|Itk|16428|IL2-inducible T-cell kinase
mm9_v1_chr19_-_17447333_17447333	0.246474	GAGAUGA	D87332|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	NM_010265|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2
mm9_v1_chr3_-_115710131_115710328	0.246031	GAGAUGA	AF529196|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	AF233322|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	BC050193|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	BC017136|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	AK075802|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	AK010008|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	NM_023214|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7
mm9_v1_chrX_+_162608411_162608448	0.242986	GAGAUGA	AK045118|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK160583|Gemin8|237221|gem (nuclear organelle) associated protein 8	NM_146238|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK085045|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK037580|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK047511|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK053774|Gemin8|237221|gem (nuclear organelle) associated protein 8
mm9_v1_chr12_+_53198729_53198769	0.242893	GAGAUGA	NM_029760|Nubpl|76826|nucleotide binding protein-like	AK152377|Nubpl|76826|nucleotide binding protein-like	AK083643|Nubpl|76826|nucleotide binding protein-like	BC062175|Nubpl|76826|nucleotide binding protein-like	AK010827|Nubpl|76826|nucleotide binding protein-like	AK141257|Nubpl|76826|nucleotide binding protein-like
mm9_v1_chr19_-_17414057_17414057	0.241838	GAGAUGA	NM_001136484|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	U19265|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2
mm9_v1_chr8_-_108351060_108351249	0.241467	GAGAUGA	AK173177|Ranbp10|74334|RAN binding protein 10	BC024698|Ranbp10|74334|RAN binding protein 10	AK048772|Ranbp10|74334|RAN binding protein 10	EU281316|Ranbp10|74334|RAN binding protein 10	AY337314|Ranbp10|74334|RAN binding protein 10	NM_145824|Ranbp10|74334|RAN binding protein 10
mm9_v1_chr12_+_66176588_66176613	0.239661	GAGAUGA	AK039944|Fancm|104806|Fanconi anemia, complementation group M	AK084697|Fancm|104806|Fanconi anemia, complementation group M	AK086395|Fancm|104806|Fanconi anemia, complementation group M	AK050306|Fancm|104806|Fanconi anemia, complementation group M	NM_178912|Fancm|104806|Fanconi anemia, complementation group M	AK053715|Fancm|104806|Fanconi anemia, complementation group M	BC150785|Fancm|104806|Fanconi anemia, complementation group M	AK173211|Fancm|104806|Fanconi anemia, complementation group M
mm9_v1_chr7_+_13483153_13483228	0.239114	GAGAUGA	AK052559|Zscan22|232878|zinc finger and SCAN domain containing 22	AK085207|Zscan22|232878|zinc finger and SCAN domain containing 22	NM_001001447|Zscan22|232878|zinc finger and SCAN domain containing 22	AK163694|Zscan22|232878|zinc finger and SCAN domain containing 22	AK078591|Zscan22|232878|zinc finger and SCAN domain containing 22	BC026676|Zscan22|232878|zinc finger and SCAN domain containing 22
mm9_v1_chr15_+_35301285_35301305	0.238888	GAGAUGA	AK053274|Vps13b|666173|vacuolar protein sorting 13B (yeast)	NM_177151|Vps13b|666173|vacuolar protein sorting 13B (yeast)	AK049111|Vps13b|666173|vacuolar protein sorting 13B (yeast)
mm9_v1_chr19_-_28085534_28085655	0.237084	GAGAUGA	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr9_-_100386803_100386891	0.236382	GAGAUGA	BC107263|Il20rb|213208|interleukin 20 receptor beta	BC107264|Il20rb|213208|interleukin 20 receptor beta	BC148190|Il20rb|213208|interleukin 20 receptor beta	NM_001033543|Il20rb|213208|interleukin 20 receptor beta
mm9_v1_chr9_+_51855254_51855279	0.234517	GAGAUGA	NM_001104616|Rdx|19684|radixin	AK162204|Rdx|19684|radixin
mm9_v1_chr2_+_152052575_152052697	0.234517	GAGAUGA	NM_007788|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	AK031617|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	AK146032|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	BC060742|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	U51866|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	AK158077|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	BC069919|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	AK011501|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	BC026149|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	BC089343|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide
mm9_v1_chrX_-_137135022_137135060	0.231908	GAGAUGA	AF201289|Tsc22d3|14605|TSC22 domain family, member 3	EU818782|Tsc22d3|14605|TSC22 domain family, member 3	NM_001077364|Tsc22d3|14605|TSC22 domain family, member 3
mm9_v1_chr15_-_99305127_99305160	0.231466	GAGAUGA	BC016225|Bcdin3d|75284|BCDIN3 domain containing	BC078455|Bcdin3d|75284|BCDIN3 domain containing	AK016154|Bcdin3d|75284|BCDIN3 domain containing	NM_029236|Bcdin3d|75284|BCDIN3 domain containing
mm9_v1_chr7_+_104728398_104728430	0.228525	GAGAUGA	AK134242|Rsf1|233532|remodeling and spacing factor 1	NM_001081267|Rsf1|233532|remodeling and spacing factor 1	AK138087|Rsf1|233532|remodeling and spacing factor 1	AK146675|Rsf1|233532|remodeling and spacing factor 1	BC085127|Rsf1|233532|remodeling and spacing factor 1	AK146154|Rsf1|233532|remodeling and spacing factor 1	AK032853|Rsf1|233532|remodeling and spacing factor 1
mm9_v1_chr1_-_36301093_36301156	0.226484	GAGAUGA	BC062936|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1	BC068283|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1	AK050532|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1	NM_198899|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1
mm9_v1_chr19_+_12502394_12502461	0.226472	GAGAUGA	NM_019540|Pfpl|56093|pore forming protein-like	AF250839|Pfpl|56093|pore forming protein-like	BC052215|Pfpl|56093|pore forming protein-like	AK141262|Pfpl|56093|pore forming protein-like
mm9_v1_chr14_-_55479326_55479326	0.225976	GAGAUGA	BC094669|Homez|239099|homeodomain leucine zipper-encoding gene	NM_183174|Homez|239099|homeodomain leucine zipper-encoding gene
mm9_v1_chr9_+_106270889_106271052	0.225225	GAGAUGA	AK140372|Dusp7|235584|dual specificity phosphatase 7	NM_153459|Dusp7|235584|dual specificity phosphatase 7
mm9_v1_chr11_+_105153956_105154033	0.22476	GAGAUGA	AK054150|Mrc2|17534|mannose receptor, C type 2	NM_008626|Mrc2|17534|mannose receptor, C type 2	AK028157|Mrc2|17534|mannose receptor, C type 2	U56734|Mrc2|17534|mannose receptor, C type 2	BC116642|Mrc2|17534|mannose receptor, C type 2
mm9_v1_chr16_+_14163356_14163402	0.224515	GAGAUGA	NM_001114085|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	NM_023317|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	AK150826|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	AK166858|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	BC023267|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)
mm9_v1_chr10_+_110601745_110601988	0.22432	GAGAUGA	AK037158|Osbpl8|237542|oxysterol binding protein-like 8	AK050244|Osbpl8|237542|oxysterol binding protein-like 8	NM_001003717|Osbpl8|237542|oxysterol binding protein-like 8	NM_175489|Osbpl8|237542|oxysterol binding protein-like 8
mm9_v1_chr11_-_121065928_121066015	0.223155	GAGAUGA	BC024349|1110031I02Rik|66179|RIKEN cDNA 1110031I02 gene	AK004005|1110031I02Rik|66179|RIKEN cDNA 1110031I02 gene	NM_025402|1110031I02Rik|66179|RIKEN cDNA 1110031I02 gene	AK168300|1110031I02Rik|66179|RIKEN cDNA 1110031I02 gene
mm9_v1_chr15_-_78893275_78893359	0.222473	GAGAUGA	BC014743|Ankrd54|223690|ankyrin repeat domain 54	NM_144849|Ankrd54|223690|ankyrin repeat domain 54	DQ884878|Ankrd54|223690|ankyrin repeat domain 54	AK133785|Ankrd54|223690|ankyrin repeat domain 54	AK050440|Ankrd54|223690|ankyrin repeat domain 54	AK143625|Ankrd54|223690|ankyrin repeat domain 54	AK084500|Ankrd54|223690|ankyrin repeat domain 54
mm9_v1_chrX_+_54296250_54296269	0.221439	GAGAUGA	AK038616|Brs3|12209|bombesin-like receptor 3	NM_009766|Brs3|12209|bombesin-like receptor 3	BC106961|Brs3|12209|bombesin-like receptor 3	BC106962|Brs3|12209|bombesin-like receptor 3
mm9_v1_chr11_+_57822347_57822565	0.221265	GAGAUGA	NM_028451|Larp1|73158|La ribonucleoprotein domain family, member 1
mm9_v1_chr2_-_179711350_179711395	0.221047	GAGAUGA	NM_001081092|Taf4a|228980|TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr1_-_162281701_162281701	0.220222	GAGAUGA	AK147634|Rabgap1l|29809|RAB GTPase activating protein 1-like	NM_001038621|Rabgap1l|29809|RAB GTPase activating protein 1-like
mm9_v1_chr4_+_62220880_62220880	0.217697	GAGAUGA	AJ250999|Rgs3|50780|regulator of G-protein signaling 3	NM_019492|Rgs3|50780|regulator of G-protein signaling 3
mm9_v1_chr7_-_135137345_135137380	0.217684	GAGAUGA	NM_023258|Pycard|66824|PYD and CARD domain containing
mm9_v1_chr7_+_16894925_16895103	0.216474	GAGAUGA	NM_133234|Bbc3|170770|BCL2 binding component 3	BC044782|Bbc3|170770|BCL2 binding component 3	AF332560|Bbc3|170770|BCL2 binding component 3	BC060370|Bbc3|170770|BCL2 binding component 3	BC147261|Bbc3|170770|BCL2 binding component 3	BC147262|Bbc3|170770|BCL2 binding component 3
mm9_v1_chr8_-_27126069_27126084	0.216311	GAGAUGA	AK090346|Fnta|14272|farnesyltransferase, CAAX box, alpha	AK010744|Fnta|14272|farnesyltransferase, CAAX box, alpha	NM_008033|Fnta|14272|farnesyltransferase, CAAX box, alpha	BC012711|Fnta|14272|farnesyltransferase, CAAX box, alpha
mm9_v1_chr8_-_36558514_36558598	0.213607	GAGAUGA	AK165026|Eri1|67276|exoribonuclease 1	BC046412|Eri1|67276|exoribonuclease 1	AK172005|Eri1|67276|exoribonuclease 1	AK144223|Eri1|67276|exoribonuclease 1	AK014041|Eri1|67276|exoribonuclease 1	AK014410|Eri1|67276|exoribonuclease 1	NM_026067|Eri1|67276|exoribonuclease 1
mm9_v1_chr11_+_86298106_86298244	0.210546	GAGAUGA	AK036401|Rnft1|76892|ring finger protein, transmembrane 1	NM_029788|Rnft1|76892|ring finger protein, transmembrane 1	AK171077|Rnft1|76892|ring finger protein, transmembrane 1	AK153293|Rnft1|76892|ring finger protein, transmembrane 1	BC050796|Rnft1|76892|ring finger protein, transmembrane 1	AK002624|Rnft1|76892|ring finger protein, transmembrane 1
mm9_v1_chr1_+_37356722_37356738	0.210043	GAGAUGA	AK162581|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	NM_030266|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I
mm9_v1_chr2_+_112124767_112124844	0.206616	GAGAUGA	AF211855|Slc12a6|107723|solute carrier family 12, member 6	NM_133648|Slc12a6|107723|solute carrier family 12, member 6
mm9_v1_chr5_-_66543123_66543228	0.20629	GAGAUGA	AK170082|Rbm47|245945|RNA binding motif protein 47	NM_001127382|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr6_+_29298117_29298193	0.205871	GAGAUGA	AK163674|Calu|12321|calumenin	NM_007594|Calu|12321|calumenin	NM_184053|Calu|12321|calumenin	AK035600|Calu|12321|calumenin	BC051423|Calu|12321|calumenin	AK032402|Calu|12321|calumenin	AK147756|Calu|12321|calumenin	AK160795|Calu|12321|calumenin	AK161807|Calu|12321|calumenin	AK166705|Calu|12321|calumenin	AK148178|Calu|12321|calumenin	AY225334|Calu|12321|calumenin	U81829|Calu|12321|calumenin	AK135295|Calu|12321|calumenin
mm9_v1_chr11_+_99797604_99797636	0.201726	GAGAUGA	AK037252|Krtap31-2|432602|keratin associated protein 31-2	NM_001025244|Krtap31-2|432602|keratin associated protein 31-2	BC147120|Krtap31-2|432602|keratin associated protein 31-2	BC147121|Krtap31-2|432602|keratin associated protein 31-2
mm9_v1_chr9_+_44947045_44947124	0.200116	GAGAUGA	BC139399|Scn4b|399548|sodium channel, type IV, beta	BC139400|Scn4b|399548|sodium channel, type IV, beta	AY669079|Scn4b|399548|sodium channel, type IV, beta	NM_001013390|Scn4b|399548|sodium channel, type IV, beta
mm9_v1_chr6_-_134742645_134742743	0.199697	GAGAUGA	AK144800|Dusp16|70686|dual specificity phosphatase 16	NM_001048054|Dusp16|70686|dual specificity phosphatase 16	NM_130447|Dusp16|70686|dual specificity phosphatase 16
mm9_v1_chr6_-_52141697_52141712	0.199594	GAGAUGA	AK076098|Hoxa4|15401|homeobox A4	BC107172|Hoxa4|15401|homeobox A4	NM_008265|Hoxa4|15401|homeobox A4
mm9_v1_chr14_-_55482884_55482994	0.199145	GAGAUGA	AK129361|Homez|239099|homeodomain leucine zipper-encoding gene	AY258064|Homez|239099|homeodomain leucine zipper-encoding gene	NM_001177705|Homez|239099|homeodomain leucine zipper-encoding gene
mm9_v1_chr9_-_105297572_105297616	0.198371	GAGAUGA	AK030042|Nek11|208583|NIMA (never in mitosis gene a)-related expressed kinase 11	AK054237|Nek11|208583|NIMA (never in mitosis gene a)-related expressed kinase 11	AK030186|Nek11|208583|NIMA (never in mitosis gene a)-related expressed kinase 11	NM_172461|Nek11|208583|NIMA (never in mitosis gene a)-related expressed kinase 11
mm9_v1_chr9_-_123771243_123771245	0.197977	GAGAUGA	AK089908|Xcr1|23832|chemokine (C motif) receptor 1	AK040878|Xcr1|23832|chemokine (C motif) receptor 1	NM_011798|Xcr1|23832|chemokine (C motif) receptor 1
mm9_v1_chr11_+_7097781_7097869	0.19678	GAGAUGA	BC013345|Igfbp1|16006|insulin-like growth factor binding protein 1	NM_008341|Igfbp1|16006|insulin-like growth factor binding protein 1	X81579|Igfbp1|16006|insulin-like growth factor binding protein 1
mm9_v1_chr16_+_49699314_49699432	0.196518	GAGAUGA	DQ266091|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	AF274590|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	AK047217|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	NM_028680|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	AK014731|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	BC138143|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	BC138144|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)
mm9_v1_chr7_+_117365214_117365324	0.195526	GAGAUGA	NM_009302|Swap70|20947|SWA-70 protein	AK146773|Swap70|20947|SWA-70 protein	AK045295|Swap70|20947|SWA-70 protein	AK041505|Swap70|20947|SWA-70 protein	AK019882|Swap70|20947|SWA-70 protein	BC065136|Swap70|20947|SWA-70 protein	AK172990|Swap70|20947|SWA-70 protein	AF053974|Swap70|20947|SWA-70 protein
mm9_v1_chr8_+_86479405_86479613	0.193784	GAGAUGA	AK134906|Asf1b|66929|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)	AK005646|Asf1b|66929|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)	AK077005|Asf1b|66929|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)	BC003428|Asf1b|66929|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)	NM_024184|Asf1b|66929|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)	AK077718|Asf1b|66929|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)	AK150818|Asf1b|66929|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)	AK151951|Asf1b|66929|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)	AK165322|Asf1b|66929|ASF1 anti-silencing function 1 homolog B (S. cerevisiae)
mm9_v1_chr16_-_46010510_46010548	0.193303	GAGAUGA	NM_001134480|Plcxd2|433022|phosphatidylinositol-specific phospholipase C, X domain containing 2
mm9_v1_chr4_+_154975473_154975535	0.192401	GAGAUGA	AK080215|Slc35e2|320541|solute carrier family 35, member E2	BC058728|Slc35e2|320541|solute carrier family 35, member E2	NM_177186|Slc35e2|320541|solute carrier family 35, member E2
mm9_v1_chr19_-_5118229_5118407	0.191868	GAGAUGA	AF055666|Klc2|16594|kinesin light chain 2	BC014845|Klc2|16594|kinesin light chain 2	AK141439|Klc2|16594|kinesin light chain 2	NM_008451|Klc2|16594|kinesin light chain 2
mm9_v1_chr4_+_138936531_138936597	0.191583	GAGAUGA	NM_001160319|Ubr4|69116|ubiquitin protein ligase E3 component n-recognin 4	AK086097|Ubr4|69116|ubiquitin protein ligase E3 component n-recognin 4
mm9_v1_chr7_+_59134514_59134648	0.189827	GAGAUGA	NM_008087|Gas2|14453|growth arrest specific 2	M21828|Gas2|14453|growth arrest specific 2
mm9_v1_chr12_+_82960953_82961016	0.187728	GAGAUGA	NM_018814|Pcnx|54604|pecanex homolog (Drosophila)
mm9_v1_chr6_+_29644178_29644255	0.187331	GAGAUGA	AF276890|Tspan33|232670|tetraspanin 33	AK172176|Tspan33|232670|tetraspanin 33	AK004954|Tspan33|232670|tetraspanin 33	BC024685|Tspan33|232670|tetraspanin 33	NM_146173|Tspan33|232670|tetraspanin 33
mm9_v1_chr6_+_53523365_53523387	0.186824	GAGAUGA	AK052230|Creb5|231991|cAMP responsive element binding protein 5	AK052451|Creb5|231991|cAMP responsive element binding protein 5	AK154148|Creb5|231991|cAMP responsive element binding protein 5	NM_172728|Creb5|231991|cAMP responsive element binding protein 5	AK170128|Creb5|231991|cAMP responsive element binding protein 5	AK155537|Creb5|231991|cAMP responsive element binding protein 5	BC098487|Creb5|231991|cAMP responsive element binding protein 5
mm9_v1_chr11_-_100683830_100683883	0.186695	GAGAUGA	AY040231|Stat5b|20851|signal transducer and activator of transcription 5B	AY042906|Stat5b|20851|signal transducer and activator of transcription 5B	AY044901|Stat5b|20851|signal transducer and activator of transcription 5B	AY044902|Stat5b|20851|signal transducer and activator of transcription 5B	AY044903|Stat5b|20851|signal transducer and activator of transcription 5B	U21110|Stat5b|20851|signal transducer and activator of transcription 5B	AK088966|Stat5b|20851|signal transducer and activator of transcription 5B	AK154014|Stat5b|20851|signal transducer and activator of transcription 5B	NM_011489|Stat5b|20851|signal transducer and activator of transcription 5B
mm9_v1_chr1_-_12980994_12981257	0.186649	GAGAUGA	BC117943|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	BC117944|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK048882|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK041736|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	NM_172841|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK028758|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1
mm9_v1_chr4_-_115690506_115690572	0.184669	GAGAUGA	AK079598|Faah|14073|fatty acid amide hydrolase	NM_010173|Faah|14073|fatty acid amide hydrolase	BC052321|Faah|14073|fatty acid amide hydrolase
mm9_v1_chr2_-_131000485_131000584	0.182918	GAGAUGA	BC006046|Spef1|70997|sperm flagellar 1	AK047675|Spef1|70997|sperm flagellar 1	NM_027641|Spef1|70997|sperm flagellar 1	AY860964|Spef1|70997|sperm flagellar 1	AK016476|Spef1|70997|sperm flagellar 1
mm9_v1_chr15_-_98364606_98364733	0.182619	GAGAUGA	BC125631|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	BC125633|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	BC145047|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	NM_133714|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	BC003301|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK046649|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK162714|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK167429|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK168499|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK089025|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK150748|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK151604|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK152604|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	AK153007|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene	BC011085|2310037I24Rik|69612|RIKEN cDNA 2310037I24 gene
mm9_v1_chr6_+_86992796_86992906	0.180475	GAGAUGA	AK087173|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	NM_013528|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AK019852|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AK039792|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	BC050762|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AF334736|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	BC010516|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1
mm9_v1_chr4_-_117438214_117438270	0.180176	GAGAUGA	BC064748|Klf17|75753|Kruppel-like factor 17	AF508984|Klf17|75753|Kruppel-like factor 17	AK018361|Klf17|75753|Kruppel-like factor 17	AK139827|Klf17|75753|Kruppel-like factor 17	NM_029416|Klf17|75753|Kruppel-like factor 17
mm9_v1_chr15_-_75839859_75839950	0.178976	GAGAUGA	AK030392|Fam83h|105732|family with sequence similarity 83, member H	NM_001168253|Fam83h|105732|family with sequence similarity 83, member H
mm9_v1_chr1_-_63160764_63160840	0.177586	GAGAUGA	AK049468|Ino80d|227195|INO80 complex subunit D	NM_001081436|Ino80d|227195|INO80 complex subunit D	NM_001114609|Ino80d|227195|INO80 complex subunit D
mm9_v1_chr2_-_121268336_121268336	0.177465	GAGAUGA	BC045151|Ell3|269344|elongation factor RNA polymerase II-like 3	NM_145973|Ell3|269344|elongation factor RNA polymerase II-like 3
mm9_v1_chr10_-_78180902_78181043	0.177055	GAGAUGA	AJ007750|Casp14|12365|caspase 14	BC101959|Casp14|12365|caspase 14	BC101960|Casp14|12365|caspase 14	BC103555|Casp14|12365|caspase 14	BC103556|Casp14|12365|caspase 14	AK081645|Casp14|12365|caspase 14	NM_009809|Casp14|12365|caspase 14
mm9_v1_chr1_-_74170987_74171037	0.175715	GAGAUGA	NM_027884|Tns1|21961|tensin 1
mm9_v1_chr5_-_66489416_66489417	0.175091	GAGAUGA	NM_139065|Rbm47|245945|RNA binding motif protein 47	BC013481|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr11_-_86014640_86014708	0.174569	GAGAUGA	AK169440|Brip1|237911|BRCA1 interacting protein C-terminal helicase 1	BC094252|Brip1|237911|BRCA1 interacting protein C-terminal helicase 1	AK169823|Brip1|237911|BRCA1 interacting protein C-terminal helicase 1	AK014036|Brip1|237911|BRCA1 interacting protein C-terminal helicase 1	AK033205|Brip1|237911|BRCA1 interacting protein C-terminal helicase 1	AK051878|Brip1|237911|BRCA1 interacting protein C-terminal helicase 1	AK145709|Brip1|237911|BRCA1 interacting protein C-terminal helicase 1	NM_178309|Brip1|237911|BRCA1 interacting protein C-terminal helicase 1
mm9_v1_chr4_-_147818818_147818893	0.1725	GAGAUGA	BC071203|Ubiad1|71707|UbiA prenyltransferase domain containing 1	AK004550|Ubiad1|71707|UbiA prenyltransferase domain containing 1	AK078442|Ubiad1|71707|UbiA prenyltransferase domain containing 1	NM_027873|Ubiad1|71707|UbiA prenyltransferase domain containing 1	AK034787|Ubiad1|71707|UbiA prenyltransferase domain containing 1
mm9_v1_chr4_-_114659706_114659870	0.171234	GAGAUGA	AK004827|Cmpk1|66588|cytidine monophosphate (UMP-CMP) kinase 1	AK146436|Cmpk1|66588|cytidine monophosphate (UMP-CMP) kinase 1	AK002526|Cmpk1|66588|cytidine monophosphate (UMP-CMP) kinase 1	BC017684|Cmpk1|66588|cytidine monophosphate (UMP-CMP) kinase 1	AK162173|Cmpk1|66588|cytidine monophosphate (UMP-CMP) kinase 1	AK150162|Cmpk1|66588|cytidine monophosphate (UMP-CMP) kinase 1	NM_025647|Cmpk1|66588|cytidine monophosphate (UMP-CMP) kinase 1	AK077534|Cmpk1|66588|cytidine monophosphate (UMP-CMP) kinase 1
mm9_v1_chr4_-_82666973_82667005	0.170945	GAGAUGA	BC138427|Frem1|329872|Fras1 related extracellular matrix protein 1	BC145274|Frem1|329872|Fras1 related extracellular matrix protein 1	AJ616838|Frem1|329872|Fras1 related extracellular matrix protein 1	NM_177863|Frem1|329872|Fras1 related extracellular matrix protein 1
mm9_v1_chr8_+_106625524_106625609	0.169731	GAGAUGA	NM_009868|Cdh5|12562|cadherin 5	AK164474|Cdh5|12562|cadherin 5	D63942|Cdh5|12562|cadherin 5	AK167620|Cdh5|12562|cadherin 5	BC054790|Cdh5|12562|cadherin 5	X83930|Cdh5|12562|cadherin 5
mm9_v1_chr15_-_75844738_75844807	0.168923	GAGAUGA	BC117947|Fam83h|105732|family with sequence similarity 83, member H	BC117948|Fam83h|105732|family with sequence similarity 83, member H	AK035531|Fam83h|105732|family with sequence similarity 83, member H	NM_134087|Fam83h|105732|family with sequence similarity 83, member H
mm9_v1_chr3_+_30691760_30691806	0.16783	GAGAUGA	BC017162|Sec62|69276|SEC62 homolog (S. cerevisiae)	NM_027016|Sec62|69276|SEC62 homolog (S. cerevisiae)
mm9_v1_chr3_-_131006068_131006148	0.167691	GAGAUGA	AK142740|Cyp2u1|71519|cytochrome P450, family 2, subfamily u, polypeptide 1	AK018458|Cyp2u1|71519|cytochrome P450, family 2, subfamily u, polypeptide 1	AK041477|Cyp2u1|71519|cytochrome P450, family 2, subfamily u, polypeptide 1	NM_027816|Cyp2u1|71519|cytochrome P450, family 2, subfamily u, polypeptide 1
mm9_v1_chr4_+_129277911_129277964	0.167222	GAGAUGA	AK045767|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	AK016715|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	AK005111|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	AK171961|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	AK050648|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	BC024696|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	BC025081|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	NM_029748|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene
mm9_v1_chr5_-_89105135_89105221	0.16681	GAGAUGA	AK045986|Grsf1|231413|G-rich RNA sequence binding factor 1	AK044889|Grsf1|231413|G-rich RNA sequence binding factor 1	AK077782|Grsf1|231413|G-rich RNA sequence binding factor 1	NM_178700|Grsf1|231413|G-rich RNA sequence binding factor 1
mm9_v1_chr3_+_134944184_134944206	0.164819	GAGAUGA	NM_001172055|Bdh2|69772|3-hydroxybutyrate dehydrogenase, type 2	NM_027208|Bdh2|69772|3-hydroxybutyrate dehydrogenase, type 2	BC021461|Bdh2|69772|3-hydroxybutyrate dehydrogenase, type 2
mm9_v1_chr5_-_66542161_66542216	0.163394	GAGAUGA	AK035620|Rbm47|245945|RNA binding motif protein 47	AK142584|Rbm47|245945|RNA binding motif protein 47	AK085733|Rbm47|245945|RNA binding motif protein 47	NM_178446|Rbm47|245945|RNA binding motif protein 47	BC112902|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr9_-_71959599_71959699	0.162959	GAGAUGA	M97635|Tcf12|21406|transcription factor 12	BC037097|Tcf12|21406|transcription factor 12	AK143246|Tcf12|21406|transcription factor 12	NM_011544|Tcf12|21406|transcription factor 12	AK169800|Tcf12|21406|transcription factor 12
mm9_v1_chrX_+_45694534_45694534	0.162675	GAGAUGA	NM_178782|Bcorl1|320376|BCL6 co-repressor-like 1
mm9_v1_chr15_-_60656465_60656634	0.161877	GAGAUGA	AK139928|Fam84b|399603|family with sequence similarity 84, member B	NM_001162926|Fam84b|399603|family with sequence similarity 84, member B
mm9_v1_chr16_+_13256573_13256634	0.160728	GAGAUGA	NM_001122667|Mkl2|239719|MKL/myocardin-like 2	X66901|Mkl2|239719|MKL/myocardin-like 2
mm9_v1_chr17_+_30763879_30763935	0.160428	GAGAUGA	AK161258|Dnahc8|13417|dynein, axonemal, heavy chain 8	AF356520|Dnahc8|13417|dynein, axonemal, heavy chain 8	AF356521|Dnahc8|13417|dynein, axonemal, heavy chain 8	NM_013811|Dnahc8|13417|dynein, axonemal, heavy chain 8	AF356522|Dnahc8|13417|dynein, axonemal, heavy chain 8	AF356523|Dnahc8|13417|dynein, axonemal, heavy chain 8	AF363577|Dnahc8|13417|dynein, axonemal, heavy chain 8
mm9_v1_chr2_+_180234680_180234753	0.159977	GAGAUGA	AB017027|Ntsr1|18216|neurotensin receptor 1	NM_018766|Ntsr1|18216|neurotensin receptor 1	BC087730|Ntsr1|18216|neurotensin receptor 1
mm9_v1_chr8_-_112261607_112261664	0.159608	GAGAUGA	AK089170|Atxn1l|52335|ataxin 1-like	NM_001080930|Atxn1l|52335|ataxin 1-like	AK172521|Atxn1l|52335|ataxin 1-like
mm9_v1_chr9_+_45646611_45646685	0.159603	GAGAUGA	NM_001145947|Bace1|23821|beta-site APP cleaving enzyme 1	NM_011792|Bace1|23821|beta-site APP cleaving enzyme 1	AK033112|Bace1|23821|beta-site APP cleaving enzyme 1	AK041285|Bace1|23821|beta-site APP cleaving enzyme 1	AK080498|Bace1|23821|beta-site APP cleaving enzyme 1	AK082317|Bace1|23821|beta-site APP cleaving enzyme 1	AK163583|Bace1|23821|beta-site APP cleaving enzyme 1	AK046175|Bace1|23821|beta-site APP cleaving enzyme 1	AK082230|Bace1|23821|beta-site APP cleaving enzyme 1	AK049626|Bace1|23821|beta-site APP cleaving enzyme 1	AF190726|Bace1|23821|beta-site APP cleaving enzyme 1	AK014464|Bace1|23821|beta-site APP cleaving enzyme 1	BC048189|Bace1|23821|beta-site APP cleaving enzyme 1
mm9_v1_chr10_-_116585527_116585608	0.159191	GAGAUGA	BC043109|Frs2|327826|fibroblast growth factor receptor substrate 2	NM_177798|Frs2|327826|fibroblast growth factor receptor substrate 2	AK028813|Frs2|327826|fibroblast growth factor receptor substrate 2	AK163442|Frs2|327826|fibroblast growth factor receptor substrate 2	BC055334|Frs2|327826|fibroblast growth factor receptor substrate 2	AK138144|Frs2|327826|fibroblast growth factor receptor substrate 2
mm9_v1_chr7_+_132851389_132851439	0.157856	GAGAUGA	NM_001081022|D430042O09Rik|233865|RIKEN cDNA D430042O09 gene	BC157963|D430042O09Rik|233865|RIKEN cDNA D430042O09 gene	BC158019|D430042O09Rik|233865|RIKEN cDNA D430042O09 gene
mm9_v1_chr13_+_113450958_113450993	0.15474	GAGAUGA	AK020109|Slc38a9|268706|solute carrier family 38, member 9	BC052361|Slc38a9|268706|solute carrier family 38, member 9	NM_178746|Slc38a9|268706|solute carrier family 38, member 9	AK044735|Slc38a9|268706|solute carrier family 38, member 9	AK043402|Slc38a9|268706|solute carrier family 38, member 9	AK034958|Slc38a9|268706|solute carrier family 38, member 9	AK039821|Slc38a9|268706|solute carrier family 38, member 9
mm9_v1_chr19_-_42687234_42687295	0.152719	GAGAUGA	BC068307|Loxl4|67573|lysyl oxidase-like 4	AK014331|Loxl4|67573|lysyl oxidase-like 4	NM_001164311|Loxl4|67573|lysyl oxidase-like 4	NM_053083|Loxl4|67573|lysyl oxidase-like 4
mm9_v1_chr16_+_36885096_36885119	0.151779	GAGAUGA	NM_030035|Golgb1|224139|golgi autoantigen, golgin subfamily b, macrogolgin 1	BC145221|Golgb1|224139|golgi autoantigen, golgin subfamily b, macrogolgin 1	BC150731|Golgb1|224139|golgi autoantigen, golgin subfamily b, macrogolgin 1
mm9_v1_chr1_+_95240200_95240244	0.150954	GAGAUGA	AK129024|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	AK009342|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	AK162517|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	AK145136|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	BC013524|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	AF222867|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	NM_023200|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	AK009870|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7
mm9_v1_chr11_-_99855307_99855307	0.150625	GAGAUGA	AK020698|Krtap17-1|77914|keratin associated protein 17-1	NM_001099774|Krtap17-1|77914|keratin associated protein 17-1
mm9_v1_chr4_+_120077885_120078004	0.150252	GAGAUGA	AK083889|Scmh1|29871|sex comb on midleg homolog 1	NM_001159630|Scmh1|29871|sex comb on midleg homolog 1	NM_013883|Scmh1|29871|sex comb on midleg homolog 1	AK078012|Scmh1|29871|sex comb on midleg homolog 1
mm9_v1_chr18_-_60872888_60873042	0.150211	GAGAUGA	AF049894|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	AF074926|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	BC066098|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	BC079561|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	NM_008306|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm9_v1_chr19_-_12870612_12870615	0.150127	GAGAUGA	NM_053009|Zfp91|109910|zinc finger protein 91	AK147560|Zfp91|109910|zinc finger protein 91
mm9_v1_chrX_-_20527674_20527737	0.149007	GAGAUGA	BC054474|Elk1|13712|ELK1, member of ETS oncogene family	AK132354|Elk1|13712|ELK1, member of ETS oncogene family	NM_007922|Elk1|13712|ELK1, member of ETS oncogene family	AK082260|Elk1|13712|ELK1, member of ETS oncogene family
mm9_v1_chr18_-_70212948_70213022	0.147512	GAGAUGA	BC032928|Rab27b|80718|RAB27b, member RAS oncogene family	AB067775|Rab27b|80718|RAB27b, member RAS oncogene family	AF328893|Rab27b|80718|RAB27b, member RAS oncogene family	BC018443|Rab27b|80718|RAB27b, member RAS oncogene family	NM_030554|Rab27b|80718|RAB27b, member RAS oncogene family
mm9_v1_chr15_-_83425479_83425610	0.146465	GAGAUGA	AM690756|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	BC055368|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	AK084879|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	AK134345|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	AK150116|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	AK143496|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	NM_183017|Ttll12|223723|tubulin tyrosine ligase-like family, member 12
mm9_v1_chr1_+_177810908_177810944	0.146353	GAGAUGA	NM_012012|Exo1|26909|exonuclease 1	AK028728|Exo1|26909|exonuclease 1	AK166425|Exo1|26909|exonuclease 1	BC006671|Exo1|26909|exonuclease 1
mm9_v1_chr2_+_92024338_92024494	0.146229	GAGAUGA	NM_138755|Phf21a|192285|PHD finger protein 21A	AB105178|Phf21a|192285|PHD finger protein 21A	AK089411|Phf21a|192285|PHD finger protein 21A	BC019181|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr12_-_77811533_77811533	0.143112	GAGAUGA	AK147299|Spnb1|20741|spectrin beta 1	NM_013675|Spnb1|20741|spectrin beta 1
mm9_v1_chr19_+_7568529_7568529	0.14308	GAGAUGA	NM_001163505|Atl3|109168|atlastin GTPase 3
mm9_v1_chr8_+_98157458_98157482	0.142729	GAGAUGA	AK019225|Gins3|78833|GINS complex subunit 3 (Psf3 homolog)	AK160606|Gins3|78833|GINS complex subunit 3 (Psf3 homolog)	NM_030198|Gins3|78833|GINS complex subunit 3 (Psf3 homolog)	BC039794|Gins3|78833|GINS complex subunit 3 (Psf3 homolog)	BC064746|Gins3|78833|GINS complex subunit 3 (Psf3 homolog)
mm9_v1_chr3_+_114606995_114607339	0.142311	GAGAUGA	AK049612|Olfm3|229759|olfactomedin 3	AK044605|Olfm3|229759|olfactomedin 3	AK045482|Olfm3|229759|olfactomedin 3	AK038569|Olfm3|229759|olfactomedin 3	AK079315|Olfm3|229759|olfactomedin 3	AK044325|Olfm3|229759|olfactomedin 3	AK137414|Olfm3|229759|olfactomedin 3	AF442825|Olfm3|229759|olfactomedin 3	NM_153458|Olfm3|229759|olfactomedin 3	BC112422|Olfm3|229759|olfactomedin 3	BC113129|Olfm3|229759|olfactomedin 3
mm9_v1_chr4_-_104548965_104549005	0.140823	GAGAUGA	AB077296|C8a|230558|complement component 8, alpha polypeptide	AB077297|C8a|230558|complement component 8, alpha polypeptide	AB077298|C8a|230558|complement component 8, alpha polypeptide	BC027748|C8a|230558|complement component 8, alpha polypeptide	AK090245|C8a|230558|complement component 8, alpha polypeptide	AB077295|C8a|230558|complement component 8, alpha polypeptide	NM_146148|C8a|230558|complement component 8, alpha polypeptide
mm9_v1_chr5_-_38893331_38893390	0.140719	GAGAUGA	BC138213|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	BC145198|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	BC006076|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	NM_145559|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9
mm9_v1_chr1_+_159436875_159436945	0.14036	GAGAUGA	NM_033354|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	BC059194|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	AK173302|Sec16b|89867|SEC16 homolog B (S. cerevisiae)
mm9_v1_chr18_+_73732352_73732560	0.140311	GAGAUGA	NM_001039214|Mex3c|240396|mex3 homolog C (C. elegans)	AK133686|Mex3c|240396|mex3 homolog C (C. elegans)
mm9_v1_chr1_-_172018982_172019074	0.139952	GAGAUGA	AK196844|Ddr2|18214|discoidin domain receptor family, member 2	NM_022563|Ddr2|18214|discoidin domain receptor family, member 2
mm9_v1_chr7_+_28376578_28376874	0.139859	GAGAUGA	AK158792|Akt2|11652|thymoma viral proto-oncogene 2	NM_001110208|Akt2|11652|thymoma viral proto-oncogene 2	AK144217|Akt2|11652|thymoma viral proto-oncogene 2	U22445|Akt2|11652|thymoma viral proto-oncogene 2
mm9_v1_chr7_-_17402066_17402094	0.139813	GAGAUGA	AK156156|Fkrp|243853|fukutin related protein	AK135089|Fkrp|243853|fukutin related protein	AK168308|Fkrp|243853|fukutin related protein	NM_173430|Fkrp|243853|fukutin related protein	AK166068|Fkrp|243853|fukutin related protein
mm9_v1_chr16_+_31664022_31664124	0.138437	GAGAUGA	AK220189|Dlg1|13383|discs, large homolog 1 (Drosophila)	BC057118|Dlg1|13383|discs, large homolog 1 (Drosophila)	NM_007862|Dlg1|13383|discs, large homolog 1 (Drosophila)
mm9_v1_chr5_-_89104575_89104676	0.138296	GAGAUGA	AK168385|Grsf1|231413|G-rich RNA sequence binding factor 1	AK168459|Grsf1|231413|G-rich RNA sequence binding factor 1	NM_001098476|Grsf1|231413|G-rich RNA sequence binding factor 1
mm9_v1_chr8_+_12757011_12757296	0.138241	GAGAUGA	AK147497|Atp11a|50770|ATPase, class VI, type 11A	NM_015804|Atp11a|50770|ATPase, class VI, type 11A	AF156551|Atp11a|50770|ATPase, class VI, type 11A	BC145399|Atp11a|50770|ATPase, class VI, type 11A	BC145400|Atp11a|50770|ATPase, class VI, type 11A	BC138715|Atp11a|50770|ATPase, class VI, type 11A
mm9_v1_chrX_+_68303282_68303430	0.138011	GAGAUGA	AK090190|Mamld1|333639|mastermind-like domain containing 1	NM_001081354|Mamld1|333639|mastermind-like domain containing 1
mm9_v1_chr11_-_59320141_59320141	0.137913	GAGAUGA	NM_001130529|Zkscan17|268417|zinc finger with KRAB and SCAN domains 17	NM_172941|Zkscan17|268417|zinc finger with KRAB and SCAN domains 17
mm9_v1_chr11_+_116295406_116295422	0.137108	GAGAUGA	AK144901|Fam100b|319370|family with sequence similarity 100, member B	NM_176902|Fam100b|319370|family with sequence similarity 100, member B
mm9_v1_chr6_+_48345584_48345680	0.135397	GAGAUGA	AK040525|Krba1|77827|KRAB-A domain containing 1	NM_133922|Krba1|77827|KRAB-A domain containing 1	AB041543|Krba1|77827|KRAB-A domain containing 1	AK158136|4930447G04Rik|74869|RIKEN cDNA 4930447G04 gene	AK128931|Krba1|77827|KRAB-A domain containing 1	AK173281|Krba1|77827|KRAB-A domain containing 1	BC066816|Krba1|77827|KRAB-A domain containing 1
mm9_v1_chr7_+_30644997_30645134	0.134847	GAGAUGA	NM_172740|Zfp420|233058|zinc finger protein 420	AK029387|Zfp420|233058|zinc finger protein 420	AK045435|Zfp420|233058|zinc finger protein 420	BC050249|Zfp420|233058|zinc finger protein 420	BC055817|Zfp420|233058|zinc finger protein 420	AK045821|Zfp420|233058|zinc finger protein 420
mm9_v1_chr11_-_75268137_75268225	0.134301	GAGAUGA	NM_138950|Wdr81|192652|WD repeat domain 81
mm9_v1_chr5_+_115956682_115956792	0.132593	GAGAUGA	AK171226|Pxn|19303|paxillin	AK148060|Pxn|19303|paxillin	NM_011223|Pxn|19303|paxillin	NM_133915|Pxn|19303|paxillin	AK149933|Pxn|19303|paxillin	AK171436|Pxn|19303|paxillin	BC025493|Pxn|19303|paxillin	AK167299|Pxn|19303|paxillin	AF293882|Pxn|19303|paxillin
mm9_v1_chr14_-_56503083_56503107	0.132196	GAGAUGA	BC065108|Cbln3|56410|cerebellin 3 precursor protein	NM_019820|Cbln3|56410|cerebellin 3 precursor protein
mm9_v1_chr3_-_107434441_107434654	0.131297	GAGAUGA	AK194900|Fam40a|229707|family with sequence similarity 40, member A	BC023952|Fam40a|229707|family with sequence similarity 40, member A	AK032065|Fam40a|229707|family with sequence similarity 40, member A	AK032642|Fam40a|229707|family with sequence similarity 40, member A	AK035833|Fam40a|229707|family with sequence similarity 40, member A	AK148011|Fam40a|229707|family with sequence similarity 40, member A	AK169644|Fam40a|229707|family with sequence similarity 40, member A	NM_153563|Fam40a|229707|family with sequence similarity 40, member A
mm9_v1_chr19_-_60937266_60937332	0.131118	GAGAUGA	AF325263|Sfxn4|94281|sideroflexin 4	BC089535|Sfxn4|94281|sideroflexin 4	AK148530|Sfxn4|94281|sideroflexin 4	BC058211|Sfxn4|94281|sideroflexin 4	NM_053198|Sfxn4|94281|sideroflexin 4
mm9_v1_chr2_+_33071451_33071671	0.130337	GAGAUGA	AK155464|Angptl2|26360|angiopoietin-like 2	NM_011923|Angptl2|26360|angiopoietin-like 2	AK037265|Angptl2|26360|angiopoietin-like 2	AK011976|Angptl2|26360|angiopoietin-like 2	BC138609|Angptl2|26360|angiopoietin-like 2	BC138610|Angptl2|26360|angiopoietin-like 2
mm9_v1_chr1_-_164914621_164914660	0.129767	GAGAUGA	NM_008030|Fmo3|14262|flavin containing monooxygenase 3	U87147|Fmo3|14262|flavin containing monooxygenase 3	AK149440|Fmo3|14262|flavin containing monooxygenase 3	AK050123|Fmo3|14262|flavin containing monooxygenase 3
mm9_v1_chr11_+_72503487_72503520	0.129757	GAGAUGA	BC139231|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	BC145583|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	NM_009671|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB011370|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB098329|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AK134008|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1
mm9_v1_chr12_+_106923552_106923650	0.129418	GAGAUGA	NM_178613|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK171097|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	BC031494|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK168962|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK042664|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK079775|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK020785|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK029484|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene
mm9_v1_chr15_+_80778910_80778973	0.12848	GAGAUGA	AK171725|Adsl|11564|adenylosuccinate lyase	BC020187|Adsl|11564|adenylosuccinate lyase	U20225|Adsl|11564|adenylosuccinate lyase	AK049372|Adsl|11564|adenylosuccinate lyase	AK051111|Adsl|11564|adenylosuccinate lyase	AK152092|Adsl|11564|adenylosuccinate lyase	NM_009634|Adsl|11564|adenylosuccinate lyase	AK166019|Adsl|11564|adenylosuccinate lyase	AK168906|Adsl|11564|adenylosuccinate lyase	AK170216|Adsl|11564|adenylosuccinate lyase
mm9_v1_chr18_+_54021746_54021814	0.126528	GAGAUGA	AK049379|Csnk1g3|70425|casein kinase 1, gamma 3	NM_152809|Csnk1g3|70425|casein kinase 1, gamma 3	AK080491|Csnk1g3|70425|casein kinase 1, gamma 3
mm9_v1_chr11_-_103611082_103611134	0.126434	GAGAUGA	AF469004|Wnt9b|22412|wingless-type MMTV integration site 9B	AB073819|Wnt9b|22412|wingless-type MMTV integration site 9B	BC110482|Wnt9b|22412|wingless-type MMTV integration site 9B	AK052708|Wnt9b|22412|wingless-type MMTV integration site 9B	NM_011719|Wnt9b|22412|wingless-type MMTV integration site 9B
mm9_v1_chr4_+_55362895_55362941	0.125828	GAGAUGA	NM_009011|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK084917|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK142280|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK150089|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK160880|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK163379|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK167582|Rad23b|19359|RAD23b homolog (S. cerevisiae)	BC027747|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK160890|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK160973|Rad23b|19359|RAD23b homolog (S. cerevisiae)
mm9_v1_chr9_+_75623153_75623180	0.125402	GAGAUGA	AK033362|Bmp5|12160|bone morphogenetic protein 5	NM_007555|Bmp5|12160|bone morphogenetic protein 5
mm9_v1_chr4_+_124479785_124479853	0.123907	GAGAUGA	AK150295|Mtf1|17764|metal response element binding transcription factor 1	NM_008636|Mtf1|17764|metal response element binding transcription factor 1	AK030284|Mtf1|17764|metal response element binding transcription factor 1	AK012676|Mtf1|17764|metal response element binding transcription factor 1	X71327|Mtf1|17764|metal response element binding transcription factor 1	BC017679|Mtf1|17764|metal response element binding transcription factor 1
mm9_v1_chr4_-_139388882_139388882	0.122857	GAGAUGA	AF254422|Pax7|18509|paired box gene 7	NM_011039|Pax7|18509|paired box gene 7
mm9_v1_chr2_-_93174606_93174694	0.122582	GAGAUGA	BC052169|Tspan18|241556|tetraspanin 18	AK042573|Tspan18|241556|tetraspanin 18	NM_183180|Tspan18|241556|tetraspanin 18	AK011742|Tspan18|241556|tetraspanin 18
mm9_v1_chr15_-_82742536_82742563	0.122455	GAGAUGA	BC138038|Tcf20|21411|transcription factor 20	BC171946|Tcf20|21411|transcription factor 20	AY007594|Tcf20|21411|transcription factor 20	NM_001114140|Tcf20|21411|transcription factor 20	NM_013836|Tcf20|21411|transcription factor 20
mm9_v1_chr11_+_75345164_75345232	0.121539	GAGAUGA	AB120363|Slc43a2|215113|solute carrier family 43, member 2	BC042513|Slc43a2|215113|solute carrier family 43, member 2	NM_173388|Slc43a2|215113|solute carrier family 43, member 2
mm9_v1_chr15_+_75447114_75447188	0.12138	GAGAUGA	NM_001044718|Zfp41|22701|zinc finger protein 41	NM_011759|Zfp41|22701|zinc finger protein 41	AK030420|Zfp41|22701|zinc finger protein 41	BC053927|Zfp41|22701|zinc finger protein 41
mm9_v1_chr4_-_40186722_40186871	0.120841	GAGAUGA	BC127163|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	BC152540|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AY553221|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AK052871|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	BC106095|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AK078287|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AK155930|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AK128929|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	BC027369|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AK087261|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	NM_172689|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
mm9_v1_chrX_-_45561726_45561881	0.120613	GAGAUGA	BC042618|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK035745|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK079248|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK032252|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK032233|Zdhhc9|208884|zinc finger, DHHC domain containing 9	NM_172465|Zdhhc9|208884|zinc finger, DHHC domain containing 9
mm9_v1_chr5_-_38108301_38108391	0.120474	GAGAUGA	BC052404|Stk32b|64293|serine/threonine kinase 32B	BC058412|Stk32b|64293|serine/threonine kinase 32B	BC056396|Stk32b|64293|serine/threonine kinase 32B	AK082468|Stk32b|64293|serine/threonine kinase 32B	NM_022416|Stk32b|64293|serine/threonine kinase 32B
mm9_v1_chr4_+_125168074_125168079	0.118729	GAGAUGA	NM_001081097|Grik3|14807|glutamate receptor, ionotropic, kainate 3	BC118004|Grik3|14807|glutamate receptor, ionotropic, kainate 3
mm9_v1_chr12_+_33063653_33063723	0.117662	GAGAUGA	NM_001162903|2010109K11Rik|72123|RIKEN cDNA 2010109K11 gene
mm9_v1_chr6_-_39675456_39675512	0.11625	GAGAUGA	AK140431|Braf|109880|Braf transforming gene	NM_139294|Braf|109880|Braf transforming gene
mm9_v1_chr19_+_18824472_18824480	0.114582	GAGAUGA	AY135644|Trpm6|225997|transient receptor potential cation channel, subfamily M, member 6	NM_153417|Trpm6|225997|transient receptor potential cation channel, subfamily M, member 6	BC145223|Trpm6|225997|transient receptor potential cation channel, subfamily M, member 6
mm9_v1_chr3_+_157699644_157699694	0.114239	GAGAUGA	AK152244|Lrrc40|67144|leucine rich repeat containing 40	AK011726|Lrrc40|67144|leucine rich repeat containing 40	AK170052|Lrrc40|67144|leucine rich repeat containing 40	AK034978|Lrrc40|67144|leucine rich repeat containing 40	NM_024194|Lrrc40|67144|leucine rich repeat containing 40	AK017814|Lrrc40|67144|leucine rich repeat containing 40	AK163288|Lrrc40|67144|leucine rich repeat containing 40	AK148748|Lrrc40|67144|leucine rich repeat containing 40
mm9_v1_chr11_-_46125777_46125868	0.113569	GAGAUGA	AK018280|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AF334144|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AK030397|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AK147971|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	BC056974|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AK147586|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	NM_133769|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2
mm9_v1_chr4_-_126106749_126106807	0.113188	GAGAUGA	AK035042|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK083652|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK171118|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK154436|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	NM_153402|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3
mm9_v1_chr5_-_38874602_38874623	0.111897	GAGAUGA	AY776155|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	NM_001012363|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9
mm9_v1_chrX_-_12339096_12339247	0.111421	GAGAUGA	AB019028|Med14|26896|mediator complex subunit 14	NM_001048208|Med14|26896|mediator complex subunit 14	NM_012005|Med14|26896|mediator complex subunit 14	BC065072|Med14|26896|mediator complex subunit 14
mm9_v1_chr13_-_8870231_8870293	0.11106	GAGAUGA	AK129254|Wdr37|207615|WD repeat domain 37	AK032582|Wdr37|207615|WD repeat domain 37	AK146209|Wdr37|207615|WD repeat domain 37	AK014128|Wdr37|207615|WD repeat domain 37	AK044740|Wdr37|207615|WD repeat domain 37	AK036203|Wdr37|207615|WD repeat domain 37	NM_001039389|Wdr37|207615|WD repeat domain 37	NM_172445|Wdr37|207615|WD repeat domain 37
mm9_v1_chr14_+_66285235_66285241	0.11078	GAGAUGA	AK133176|Scara5|71145|scavenger receptor class A, member 5 (putative)	NM_001168318|Scara5|71145|scavenger receptor class A, member 5 (putative)	NM_028903|Scara5|71145|scavenger receptor class A, member 5 (putative)
mm9_v1_chr19_+_7568894_7569107	0.110461	GAGAUGA	NM_146091|Atl3|109168|atlastin GTPase 3	AK147720|Atl3|109168|atlastin GTPase 3	AK170550|Atl3|109168|atlastin GTPase 3	AK077752|Atl3|109168|atlastin GTPase 3	AK028842|Atl3|109168|atlastin GTPase 3	AK030660|Atl3|109168|atlastin GTPase 3	AK169476|Atl3|109168|atlastin GTPase 3	BC017138|Atl3|109168|atlastin GTPase 3	AK014617|Atl3|109168|atlastin GTPase 3
mm9_v1_chr17_+_3114963_3115105	0.110366	GAGAUGA	AK157957|Scaf8|106583|SR-related CTD-associated factor 8	AK042381|Scaf8|106583|SR-related CTD-associated factor 8	NM_134123|Scaf8|106583|SR-related CTD-associated factor 8	BC075621|Scaf8|106583|SR-related CTD-associated factor 8	AK122451|Scaf8|106583|SR-related CTD-associated factor 8
mm9_v1_chr1_+_145586478_145586478	0.109733	GAGAUGA	AK005853|Glrx2|69367|glutaredoxin 2 (thioltransferase)	NM_001038593|Glrx2|69367|glutaredoxin 2 (thioltransferase)
mm9_v1_chr19_+_4510471_4510550	0.109552	GAGAUGA	NM_001162946|Pcx|18563|pyruvate carboxylase	AK170596|Pcx|18563|pyruvate carboxylase	AK170871|Pcx|18563|pyruvate carboxylase	AK148328|Pcx|18563|pyruvate carboxylase	BC055030|Pcx|18563|pyruvate carboxylase	AK128927|Pcx|18563|pyruvate carboxylase	AK172320|Pcx|18563|pyruvate carboxylase
mm9_v1_chrX_-_5750065_5750108	0.108411	GAGAUGA	BC055771|Nudt10|102954|nudix (nucleoside diphosphate linked moiety X)-type motif 10	NM_001031664|Nudt10|102954|nudix (nucleoside diphosphate linked moiety X)-type motif 10
mm9_v1_chr5_+_34185760_34185844	0.10565	GAGAUGA	NM_001081102|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_001177884|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_175231|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	BC079668|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)
mm9_v1_chr19_-_28057437_28057437	0.105045	GAGAUGA	NM_001166414|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr4_-_82698070_82698070	0.102168	GAGAUGA	AB160986|Frem1|329872|Fras1 related extracellular matrix protein 1	NM_001198811|Frem1|329872|Fras1 related extracellular matrix protein 1
mm9_v1_chr4_+_129138915_129138922	0.101796	GAGAUGA	BC049111|Bsdc1|100383|BSD domain containing 1	NM_133889|Bsdc1|100383|BSD domain containing 1
mm9_v1_chr8_+_63111621_63111675	0.100391	GAGAUGA	AK089654|Mfap3l|71306|microfibrillar-associated protein 3-like	NM_027756|Mfap3l|71306|microfibrillar-associated protein 3-like	BC095950|Mfap3l|71306|microfibrillar-associated protein 3-like
mm9_v1_chr3_-_104667319_104667422	0.0993612	GAGAUGA	AK161370|Capza1|12340|capping protein (actin filament) muscle Z-line, alpha 1	NM_009797|Capza1|12340|capping protein (actin filament) muscle Z-line, alpha 1
mm9_v1_chr9_+_56266618_56266679	0.0960073	GAGAUGA	AK088542|Hmg20a|66867|high mobility group 20A	AK032790|Hmg20a|66867|high mobility group 20A	AK039222|Hmg20a|66867|high mobility group 20A	AK004596|Hmg20a|66867|high mobility group 20A	AK086346|Hmg20a|66867|high mobility group 20A	AK154075|Hmg20a|66867|high mobility group 20A	BC013804|Hmg20a|66867|high mobility group 20A	DQ182735|Hmg20a|66867|high mobility group 20A	NM_025812|Hmg20a|66867|high mobility group 20A	AL355705|Hmg20a|66867|high mobility group 20A
mm9_v1_chrX_-_45816308_45816348	0.0953255	GAGAUGA	AK155709|Elf4|56501|E74-like factor 4 (ets domain transcription factor)	NM_019680|Elf4|56501|E74-like factor 4 (ets domain transcription factor)	AK084896|Elf4|56501|E74-like factor 4 (ets domain transcription factor)
mm9_v1_chr3_-_92822980_92822984	0.0947005	GAGAUGA	AK003825|Lce1m|66203|late cornified envelope 1M	AK019517|Lce1m|66203|late cornified envelope 1M	AK004318|Lce1m|66203|late cornified envelope 1M	BC109181|Lce1m|66203|late cornified envelope 1M	BC109182|Lce1m|66203|late cornified envelope 1M	NM_025420|Lce1m|66203|late cornified envelope 1M
mm9_v1_chr1_-_182627107_182627164	0.0940144	GAGAUGA	AF201959|Mixl1|27217|Mix1 homeobox-like 1 (Xenopus laevis)	AF135063|Mixl1|27217|Mix1 homeobox-like 1 (Xenopus laevis)	AB221547|Mixl1|27217|Mix1 homeobox-like 1 (Xenopus laevis)	AF154573|Mixl1|27217|Mix1 homeobox-like 1 (Xenopus laevis)	BC099876|Mixl1|27217|Mix1 homeobox-like 1 (Xenopus laevis)	BC099877|Mixl1|27217|Mix1 homeobox-like 1 (Xenopus laevis)	NM_013729|Mixl1|27217|Mix1 homeobox-like 1 (Xenopus laevis)
mm9_v1_chr12_+_86451782_86451862	0.0919286	GAGAUGA	AK158877|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	NM_030225|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK019713|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK149664|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK168570|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK171100|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK028513|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK047270|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK054053|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK169943|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	BC006702|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	CT010197|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
mm9_v1_chr15_+_78939343_78939412	0.0901634	GAGAUGA	AK147646|Micall1|27008|microtubule associated monoxygenase, calponin and LIM domain containing -like 1	AK147587|Micall1|27008|microtubule associated monoxygenase, calponin and LIM domain containing -like 1	NM_177461|Micall1|27008|microtubule associated monoxygenase, calponin and LIM domain containing -like 1
mm9_v1_chr15_-_103070227_103070257	0.0889305	GAGAUGA	BC004707|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001076789|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr7_-_112900699_112900744	0.0872228	GAGAUGA	AJ011912|Tpp1|12751|tripeptidyl peptidase I	BC024820|Tpp1|12751|tripeptidyl peptidase I	AK170781|Tpp1|12751|tripeptidyl peptidase I	AK146759|Tpp1|12751|tripeptidyl peptidase I	AK048279|Tpp1|12751|tripeptidyl peptidase I	NM_009906|Tpp1|12751|tripeptidyl peptidase I	AK083832|Tpp1|12751|tripeptidyl peptidase I	AK169924|Tpp1|12751|tripeptidyl peptidase I	AF111172|Tpp1|12751|tripeptidyl peptidase I	AK155021|Tpp1|12751|tripeptidyl peptidase I	AK002418|Tpp1|12751|tripeptidyl peptidase I	AK165669|Tpp1|12751|tripeptidyl peptidase I
mm9_v1_chr8_+_41947720_41947804	0.0862837	GAGAUGA	NM_007514|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	NM_001044740|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	AK155558|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	AK169923|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	AK154621|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	AK171369|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	DQ086834|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	U35650|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	BC127082|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
mm9_v1_chr4_+_57580989_57581153	0.0851505	GAGAUGA	AK045344|Palm2|242481|paralemmin 2	NM_172868|Palm2|242481|paralemmin 2	BC113156|Palm2|242481|paralemmin 2
mm9_v1_chr1_-_45560001_45560126	0.0821882	GAGAUGA	AK147328|Col5a2|12832|collagen, type V, alpha 2	NM_007737|Col5a2|12832|collagen, type V, alpha 2
mm9_v1_chr18_+_44540137_44540241	0.0797454	GAGAUGA	AK153105|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	NM_027490|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK008609|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK017809|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK166560|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK010490|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK152160|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK153264|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK153310|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)
mm9_v1_chr3_-_103594950_103595238	0.0797051	GAGAUGA	BC145697|Hipk1|15257|homeodomain interacting protein kinase 1	BC145699|Hipk1|15257|homeodomain interacting protein kinase 1	AF170303|Hipk1|15257|homeodomain interacting protein kinase 1	AF170304|Hipk1|15257|homeodomain interacting protein kinase 1	AF077658|Hipk1|15257|homeodomain interacting protein kinase 1	AK134408|Hipk1|15257|homeodomain interacting protein kinase 1	NM_010432|Hipk1|15257|homeodomain interacting protein kinase 1
mm9_v1_chr4_+_137990567_137990674	0.0789183	GAGAUGA	NM_026689|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1	AK170149|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1	AK002416|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1	AK083295|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1	BC019516|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1	AK044088|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1	AK076419|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1	AK153956|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1	EU935009|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1
mm9_v1_chr18_+_64500017_64500040	0.0760049	GAGAUGA	AY242995|Onecut2|225631|one cut domain, family member 2	NM_194268|Onecut2|225631|one cut domain, family member 2	BC100750|Onecut2|225631|one cut domain, family member 2	BC100755|Onecut2|225631|one cut domain, family member 2	BC103668|Onecut2|225631|one cut domain, family member 2
mm9_v1_chr2_-_26207615_26207656	0.0755225	GAGAUGA	AK004089|Dnlz|52838|DNL-type zinc finger	AK142070|Dnlz|52838|DNL-type zinc finger	NM_001139503|Dnlz|52838|DNL-type zinc finger	NM_001139504|Dnlz|52838|DNL-type zinc finger	NM_026828|Dnlz|52838|DNL-type zinc finger
mm9_v1_chr19_-_53465036_53465068	0.0754609	GAGAUGA	AK168575|Smndc1|76479|survival motor neuron domain containing 1	BC058779|Smndc1|76479|survival motor neuron domain containing 1	AK010395|Smndc1|76479|survival motor neuron domain containing 1	AK078834|Smndc1|76479|survival motor neuron domain containing 1	AK090047|Smndc1|76479|survival motor neuron domain containing 1	NM_172429|Smndc1|76479|survival motor neuron domain containing 1
mm9_v1_chr1_+_145586675_145586780	0.0746902	GAGAUGA	NM_001038592|Glrx2|69367|glutaredoxin 2 (thioltransferase)	NM_023505|Glrx2|69367|glutaredoxin 2 (thioltransferase)	BC065387|Glrx2|69367|glutaredoxin 2 (thioltransferase)	AF380337|Glrx2|69367|glutaredoxin 2 (thioltransferase)	BC132031|Glrx2|69367|glutaredoxin 2 (thioltransferase)	BC132033|Glrx2|69367|glutaredoxin 2 (thioltransferase)	BC145303|Glrx2|69367|glutaredoxin 2 (thioltransferase)	BC145304|Glrx2|69367|glutaredoxin 2 (thioltransferase)	AF276918|Glrx2|69367|glutaredoxin 2 (thioltransferase)
mm9_v1_chr9_-_44150387_44150463	0.0738269	GAGAUGA	AK028234|Hmbs|15288|hydroxymethylbilane synthase	AK143558|Hmbs|15288|hydroxymethylbilane synthase	AK158160|Hmbs|15288|hydroxymethylbilane synthase	NM_001110251|Hmbs|15288|hydroxymethylbilane synthase
mm9_v1_chr2_-_5635547_5635807	0.0724746	GAGAUGA	AK053173|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK170123|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK170777|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	NM_177343|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK147616|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID
mm9_v1_chr5_-_141124884_141125029	0.071505	GAGAUGA	AK052340|Ttyh3|78339|tweety homolog 3 (Drosophila)	BC059083|Ttyh3|78339|tweety homolog 3 (Drosophila)	BC062917|Ttyh3|78339|tweety homolog 3 (Drosophila)	NM_175274|Ttyh3|78339|tweety homolog 3 (Drosophila)
mm9_v1_chr12_+_112404645_112404765	0.071471	GAGAUGA	AK147304|Traf3|22031|TNF receptor-associated factor 3	NM_001048206|Traf3|22031|TNF receptor-associated factor 3	NM_011632|Traf3|22031|TNF receptor-associated factor 3	U21050|Traf3|22031|TNF receptor-associated factor 3
mm9_v1_chr10_+_92951512_92951516	0.0687023	GAGAUGA	AK014518|Hal|15109|histidine ammonia lyase	NM_010401|Hal|15109|histidine ammonia lyase	BC157999|Hal|15109|histidine ammonia lyase
mm9_v1_chr9_+_111174321_111174442	0.0647771	GAGAUGA	BC018474|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	NM_175266|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK032284|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK043518|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK030084|Epm2aip1|77781|EPM2A (laforin) interacting protein 1
mm9_v1_chr9_-_105862973_105862984	0.0644528	GAGAUGA	AM748256|Gm7455|665033|predicted gene 7455	NM_001167923|Gm7455|665033|predicted gene 7455
mm9_v1_chr7_+_108257288_108257396	0.0644123	GAGAUGA	AK141949|Fchsd2|207278|FCH and double SH3 domains 2	NM_001146010|Fchsd2|207278|FCH and double SH3 domains 2	NM_199012|Fchsd2|207278|FCH and double SH3 domains 2	BC016532|Fchsd2|207278|FCH and double SH3 domains 2	AK140322|Fchsd2|207278|FCH and double SH3 domains 2	AK157054|Fchsd2|207278|FCH and double SH3 domains 2	AK156841|Fchsd2|207278|FCH and double SH3 domains 2	BC060647|Fchsd2|207278|FCH and double SH3 domains 2	AK165341|Fchsd2|207278|FCH and double SH3 domains 2	AK122368|Fchsd2|207278|FCH and double SH3 domains 2
mm9_v1_chr4_-_134954104_134954141	0.0629717	GAGAUGA	BC037722|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	BC005730|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	BC039748|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	AK167453|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	NM_001168500|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	NM_145555|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene
mm9_v1_chr1_+_159456274_159456300	0.0626173	GAGAUGA	AK132144|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	AB063356|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	NM_001159986|Sec16b|89867|SEC16 homolog B (S. cerevisiae)
mm9_v1_chr8_+_90642636_90642724	0.0625184	GAGAUGA	NM_029074|Tmem188|382030|transmembrane protein 188	AK146578|Tmem188|382030|transmembrane protein 188	BC018498|Tmem188|382030|transmembrane protein 188	AK017198|Tmem188|382030|transmembrane protein 188	BC094385|Tmem188|382030|transmembrane protein 188	BC118981|Tmem188|382030|transmembrane protein 188	BC148291|Tmem188|382030|transmembrane protein 188
mm9_v1_chr7_-_31911884_31911980	0.0620404	GAGAUGA	BC009652|Scn1b|20266|sodium channel, voltage-gated, type I, beta	NM_011322|Scn1b|20266|sodium channel, voltage-gated, type I, beta
mm9_v1_chr4_-_86315874_86315968	0.0575216	GAGAUGA	BC054766|Plin2|11520|perilipin 2	AK152896|Plin2|11520|perilipin 2	BC047124|Plin2|11520|perilipin 2	AK152263|Plin2|11520|perilipin 2	AK090277|Plin2|11520|perilipin 2	AK002911|Plin2|11520|perilipin 2	AK150177|Plin2|11520|perilipin 2	AK152081|Plin2|11520|perilipin 2	AK152877|Plin2|11520|perilipin 2	AK154582|Plin2|11520|perilipin 2	M93275|Plin2|11520|perilipin 2	AK167140|Plin2|11520|perilipin 2	AK153222|Plin2|11520|perilipin 2	AK152982|Plin2|11520|perilipin 2	NM_007408|Plin2|11520|perilipin 2
mm9_v1_chr5_-_135164426_135164540	0.0571374	GAGAUGA	BC063768|Limk1|16885|LIM-domain containing, protein kinase	AK141813|Limk1|16885|LIM-domain containing, protein kinase	AK164484|Limk1|16885|LIM-domain containing, protein kinase	U15159|Limk1|16885|LIM-domain containing, protein kinase	NM_010717|Limk1|16885|LIM-domain containing, protein kinase	U14166|Limk1|16885|LIM-domain containing, protein kinase
mm9_v1_chr2_+_76244578_76244594	0.0569626	GAGAUGA	AK044411|Osbpl6|99031|oxysterol binding protein-like 6	NM_145525|Osbpl6|99031|oxysterol binding protein-like 6
mm9_v1_chr12_+_3572390_3572542	0.0567177	GAGAUGA	NM_001162465|Dtnb|13528|dystrobrevin, beta	AK043436|Dtnb|13528|dystrobrevin, beta	AK157158|Dtnb|13528|dystrobrevin, beta	AK083752|Dtnb|13528|dystrobrevin, beta	AK085675|Dtnb|13528|dystrobrevin, beta	AJ003007|Dtnb|13528|dystrobrevin, beta
mm9_v1_chr9_+_121551833_121551954	0.0566684	GAGAUGA	AK052465|Vipr1|22354|vasoactive intestinal peptide receptor 1	NM_011703|Vipr1|22354|vasoactive intestinal peptide receptor 1	AF266282|Vipr1|22354|vasoactive intestinal peptide receptor 1
mm9_v1_chr5_-_38871369_38871544	0.0558078	GAGAUGA	AF490463|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	AK037093|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	AK172234|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	AK156740|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	AF469480|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	NM_001102414|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	NM_001102415|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9
mm9_v1_chr2_+_121115337_121115465	0.0557596	GAGAUGA	AF182213|Mtap1a|17754|microtubule-associated protein 1 A	NM_032393|Mtap1a|17754|microtubule-associated protein 1 A	AK044057|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr9_-_101101334_101101402	0.0552006	GAGAUGA	AK169510|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha	AK132175|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha	NM_172144|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha
mm9_v1_chr18_-_70301202_70301243	0.0551078	GAGAUGA	AK045312|Rab27b|80718|RAB27b, member RAS oncogene family	AK086987|Rab27b|80718|RAB27b, member RAS oncogene family	AK049854|Rab27b|80718|RAB27b, member RAS oncogene family	NM_001082553|Rab27b|80718|RAB27b, member RAS oncogene family
mm9_v1_chr4_-_134941539_134941586	0.0539565	GAGAUGA	AK076488|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	AK014757|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	NM_001168498|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	NM_181047|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene
mm9_v1_chr9_-_44152242_44152310	0.0534895	GAGAUGA	AK153884|Hmbs|15288|hydroxymethylbilane synthase	BC003861|Hmbs|15288|hydroxymethylbilane synthase	AK167702|Hmbs|15288|hydroxymethylbilane synthase	AK151020|Hmbs|15288|hydroxymethylbilane synthase	NM_013551|Hmbs|15288|hydroxymethylbilane synthase
mm9_v1_chr6_+_108163089_108163111	0.052559	GAGAUGA	AK047719|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	AK137477|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	NM_010585|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	X15373|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1
mm9_v1_chr12_-_52792851_52792915	0.0521601	GAGAUGA	BC138055|Strn3|94186|striatin, calmodulin binding protein 3	BC145127|Strn3|94186|striatin, calmodulin binding protein 3	AF307777|Strn3|94186|striatin, calmodulin binding protein 3	EF685152|Strn3|94186|striatin, calmodulin binding protein 3	AK139183|Strn3|94186|striatin, calmodulin binding protein 3	AK140447|Strn3|94186|striatin, calmodulin binding protein 3	AK164967|Strn3|94186|striatin, calmodulin binding protein 3	NM_001172098|Strn3|94186|striatin, calmodulin binding protein 3	NM_052973|Strn3|94186|striatin, calmodulin binding protein 3
mm9_v1_chr1_+_138027943_138028013	0.0518481	GAGAUGA	NM_001039472|Kif21b|16565|kinesin family member 21B
mm9_v1_chr4_+_115500670_115500814	0.0513033	GAGAUGA	AK084014|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	AK148476|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	NM_175308|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC099740|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC137587|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC137589|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)
mm9_v1_chr1_+_51345952_51345993	0.0493383	GAGAUGA	AK035324|Sdpr|20324|serum deprivation response	BC027005|Sdpr|20324|serum deprivation response	NM_138741|Sdpr|20324|serum deprivation response	AK132324|Sdpr|20324|serum deprivation response
mm9_v1_chr1_-_158649020_158649095	0.049029	GAGAUGA	AK132149|Fam20b|215015|family with sequence similarity 20, member B	NM_145413|Fam20b|215015|family with sequence similarity 20, member B	AK034081|Fam20b|215015|family with sequence similarity 20, member B	BC019381|Fam20b|215015|family with sequence similarity 20, member B
mm9_v1_chr13_+_41345120_41345273	0.0477858	GAGAUGA	NM_001135577|BC024659|108934|cDNA sequence BC024659	BC066054|BC024659|108934|cDNA sequence BC024659	BC094222|BC024659|108934|cDNA sequence BC024659
mm9_v1_chr17_+_53618542_53618596	0.0471768	GAGAUGA	AK081999|Rab5a|271457|RAB5A, member RAS oncogene family	NM_025887|Rab5a|271457|RAB5A, member RAS oncogene family	AK076093|Rab5a|271457|RAB5A, member RAS oncogene family	BC096481|Rab5a|271457|RAB5A, member RAS oncogene family
mm9_v1_chr4_+_132530009_132530071	0.0469357	GAGAUGA	NM_010208|Fgr|14191|Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog	AK155902|Fgr|14191|Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog	AK089812|Fgr|14191|Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog	AK157640|Fgr|14191|Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog	AK171824|Fgr|14191|Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog	X16440|Fgr|14191|Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog
mm9_v1_chr18_-_55149819_55149833	0.0468917	GAGAUGA	AK051334|Zfp608|269023|zinc finger protein 608	NM_175751|Zfp608|269023|zinc finger protein 608
mm9_v1_chr4_-_41516463_41516600	0.0468596	GAGAUGA	BC147810|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC147808|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC147834|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC147836|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC172167|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC172173|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	AK009522|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	AK134737|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	NM_001159583|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	NM_027993|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene
mm9_v1_chr1_+_189821727_189821874	0.0465657	GAGAUGA	BC082324|Esrrg|26381|estrogen-related receptor gamma	NM_011935|Esrrg|26381|estrogen-related receptor gamma	AB093266|Esrrg|26381|estrogen-related receptor gamma	AF117254|Esrrg|26381|estrogen-related receptor gamma	AB221580|Esrrg|26381|estrogen-related receptor gamma
mm9_v1_chr3_+_88639149_88639197	0.0461093	GAGAUGA	NM_027389|Gon4l|76022|gon-4-like (C.elegans)	AK147575|Gon4l|76022|gon-4-like (C.elegans)	BC037148|Gon4l|76022|gon-4-like (C.elegans)
mm9_v1_chr2_+_92025639_92025639	0.0445477	GAGAUGA	AK037174|Phf21a|192285|PHD finger protein 21A	NM_001109691|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr14_+_56983847_56983904	0.043462	GAGAUGA	BC109010|Atp12a|192113|ATPase, H+/K+ transporting, nongastric, alpha polypeptide	BC109011|Atp12a|192113|ATPase, H+/K+ transporting, nongastric, alpha polypeptide	NM_138652|Atp12a|192113|ATPase, H+/K+ transporting, nongastric, alpha polypeptide
mm9_v1_chr1_+_133495690_133495690	0.0431602	GAGAUGA	NM_011924|Avpr1b|26361|arginine vasopressin receptor 1B
mm9_v1_chr5_-_93473976_93474047	0.0430375	GAGAUGA	AK033423|Ankrd56|78088|ankyrin repeat domain 56	AK137429|Ankrd56|78088|ankyrin repeat domain 56	NM_175270|Ankrd56|78088|ankyrin repeat domain 56
mm9_v1_chr2_+_130732201_130732231	0.0422286	GAGAUGA	AK155069|Atrn|11990|attractin	AF116897|Atrn|11990|attractin	NM_009730|Atrn|11990|attractin
mm9_v1_chr14_+_69808694_69808750	0.0419933	GAGAUGA	BC132401|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)	BC132427|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)	AK137281|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)	NM_010921|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)	U88542|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)	BC050109|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)
mm9_v1_chr15_-_102087673_102087947	0.0416068	GAGAUGA	M34476|Rarg|19411|retinoic acid receptor, gamma	X15848|Rarg|19411|retinoic acid receptor, gamma	M32068|Rarg|19411|retinoic acid receptor, gamma	BC012923|Rarg|19411|retinoic acid receptor, gamma	NM_011244|Rarg|19411|retinoic acid receptor, gamma	AK148064|Rarg|19411|retinoic acid receptor, gamma
mm9_v1_chr11_+_110927475_110927548	0.0403826	GAGAUGA	AK044915|Kcnj2|16518|potassium inwardly-rectifying channel, subfamily J, member 2	NM_008425|Kcnj2|16518|potassium inwardly-rectifying channel, subfamily J, member 2	X73052|Kcnj2|16518|potassium inwardly-rectifying channel, subfamily J, member 2
mm9_v1_chr1_-_140753398_140753430	0.0396514	GAGAUGA	AK141677|2310009B15Rik|69549|RIKEN cDNA 2310009B15 gene	NM_001081226|2310009B15Rik|69549|RIKEN cDNA 2310009B15 gene
mm9_v1_chr9_+_37421361_37421439	0.0371388	GAGAUGA	AK028598|Siae|22619|sialic acid acetylesterase	AK165103|Siae|22619|sialic acid acetylesterase	AK043392|Siae|22619|sialic acid acetylesterase	AK167103|Siae|22619|sialic acid acetylesterase	AK164852|Siae|22619|sialic acid acetylesterase	U40408|Siae|22619|sialic acid acetylesterase	AK028656|Siae|22619|sialic acid acetylesterase	NM_011734|Siae|22619|sialic acid acetylesterase	U61183|Siae|22619|sialic acid acetylesterase	X98625|Siae|22619|sialic acid acetylesterase	BC007136|Siae|22619|sialic acid acetylesterase
mm9_v1_chr7_+_28390872_28390878	0.0364557	GAGAUGA	BC026151|Akt2|11652|thymoma viral proto-oncogene 2	NM_007434|Akt2|11652|thymoma viral proto-oncogene 2
mm9_v1_chr16_-_33056255_33056271	0.0364467	GAGAUGA	BC049990|Iqcg|69707|IQ motif containing G	AK158170|Iqcg|69707|IQ motif containing G	NM_178378|Iqcg|69707|IQ motif containing G
mm9_v1_chr5_+_138526303_138526341	0.0356518	GAGAUGA	NM_029869|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	NM_133906|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK036807|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK031759|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020355|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK154831|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020039|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK054323|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1
mm9_v1_chr16_-_15594609_15594629	0.0346704	GAGAUGA	NM_001159351|Ube2v2|70620|ubiquitin-conjugating enzyme E2 variant 2	NM_023585|Ube2v2|70620|ubiquitin-conjugating enzyme E2 variant 2
mm9_v1_chr2_-_38142866_38142913	0.0341501	GAGAUGA	BC027786|Dennd1a|227801|DENN/MADD domain containing 1A	AK137530|Dennd1a|227801|DENN/MADD domain containing 1A	BC023016|Dennd1a|227801|DENN/MADD domain containing 1A	NM_146122|Dennd1a|227801|DENN/MADD domain containing 1A
mm9_v1_chr18_-_10029925_10030160	0.0340598	GAGAUGA	AB034633|Usp14|59025|ubiquitin specific peptidase 14	BC050197|Usp14|59025|ubiquitin specific peptidase 14	AK045909|Usp14|59025|ubiquitin specific peptidase 14	BC005571|Usp14|59025|ubiquitin specific peptidase 14	AK029977|Usp14|59025|ubiquitin specific peptidase 14	AK160215|Usp14|59025|ubiquitin specific peptidase 14	AK011322|Usp14|59025|ubiquitin specific peptidase 14	AK172477|Usp14|59025|ubiquitin specific peptidase 14	AK170933|Usp14|59025|ubiquitin specific peptidase 14	NM_001038589|Usp14|59025|ubiquitin specific peptidase 14	NM_021522|Usp14|59025|ubiquitin specific peptidase 14
mm9_v1_chr7_-_35070627_35070627	0.0335248	GAGAUGA	AK076994|4931406P16Rik|233103|RIKEN cDNA 4931406P16 gene	NM_172741|4931406P16Rik|233103|RIKEN cDNA 4931406P16 gene
mm9_v1_chr3_+_113733457_113733508	0.0332128	GAGAUGA	AK140136|Col11a1|12814|collagen, type XI, alpha 1	NM_007729|Col11a1|12814|collagen, type XI, alpha 1	BC052161|Col11a1|12814|collagen, type XI, alpha 1
mm9_v1_chr4_+_101180580_101180604	0.0300099	GAGAUGA	NM_001164584|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	NM_001164585|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	AK030374|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	AK122293|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6
mm9_v1_chr15_-_73015345_73015397	0.0293625	GAGAUGA	NM_153178|Eif2c2|239528|eukaryotic translation initiation factor 2C, 2
mm9_v1_chr10_-_79076744_79076769	0.0285173	GAGAUGA	BC089008|C2cd4c|237397|C2 calcium-dependent domain containing 4C	NM_198614|C2cd4c|237397|C2 calcium-dependent domain containing 4C	AK029946|C2cd4c|237397|C2 calcium-dependent domain containing 4C	NM_001168624|C2cd4c|237397|C2 calcium-dependent domain containing 4C
mm9_v1_chr6_-_23198140_23198361	0.0273237	GAGAUGA	AK014242|Fezf1|73191|Fez family zinc finger 1	BC119565|Fezf1|73191|Fez family zinc finger 1	BC119566|Fezf1|73191|Fez family zinc finger 1	NM_028462|Fezf1|73191|Fez family zinc finger 1	BC049157|Fezf1|73191|Fez family zinc finger 1
mm9_v1_chr14_-_55545586_55545624	0.0264357	GAGAUGA	NM_010112|Efs|13644|embryonal Fyn-associated substrate
mm9_v1_chr19_+_53217238_53217304	0.0243382	GAGAUGA	NM_001164100|Add3|27360|adducin 3 (gamma)	AK144174|Add3|27360|adducin 3 (gamma)
mm9_v1_chr2_-_165151935_165152001	0.0237368	GAGAUGA	AK047040|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK050823|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK053574|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK032033|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	BC023954|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK038097|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK045428|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK129023|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	NM_080287|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	NM_207706|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)
mm9_v1_chr4_-_133928435_133928461	0.021239	GAGAUGA	AK164184|Extl1|56219|exostoses (multiple)-like 1	AK085075|Extl1|56219|exostoses (multiple)-like 1	AK172619|Extl1|56219|exostoses (multiple)-like 1	NM_019578|Extl1|56219|exostoses (multiple)-like 1
mm9_v1_chr12_+_3426883_3427022	0.020877	GAGAUGA	AK080679|Asxl2|75302|additional sex combs like 2 (Drosophila)	NM_172421|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK036839|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK142135|Asxl2|75302|additional sex combs like 2 (Drosophila)	BC141140|Asxl2|75302|additional sex combs like 2 (Drosophila)
mm9_v1_chr9_+_21760196_21760229	0.0206603	GAGAUGA	NM_025870|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	BC150493|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	AK009864|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	BC019749|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	AK043948|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene
mm9_v1_chr8_-_60131768_60131885	0.0193176	GAGAUGA	AF349573|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK030683|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK033427|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK036523|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	BC052461|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK041791|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_001167981|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_144731|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7
mm9_v1_chr2_-_132073510_132073523	0.0162079	GAGAUGA	AK017729|5730494N06Rik|70612|RIKEN cDNA 5730494N06 gene	NM_001141971|5730494N06Rik|70612|RIKEN cDNA 5730494N06 gene	NM_027478|5730494N06Rik|70612|RIKEN cDNA 5730494N06 gene
mm9_v1_chr11_+_80114320_80114577	0.0145888	GAGAUGA	AJ313479|Rhbdl3|246104|rhomboid, veinlet-like 3 (Drosophila)	NM_139228|Rhbdl3|246104|rhomboid, veinlet-like 3 (Drosophila)	BC054784|Rhbdl3|246104|rhomboid, veinlet-like 3 (Drosophila)	BC056969|Rhbdl3|246104|rhomboid, veinlet-like 3 (Drosophila)
mm9_v1_chr18_+_37581071_37581102	0.0142266	GAGAUGA	AK078189|Pcdhb11|93882|protocadherin beta 11	NM_053136|Pcdhb11|93882|protocadherin beta 11	AK160803|Pcdhb11|93882|protocadherin beta 11
mm9_v1_chr5_+_115729684_115729726	0.0139548	GAGAUGA	AK014348|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK045993|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK050334|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	BC052345|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK007496|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	NM_026504|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK009825|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)
mm9_v1_chr5_+_31357119_31357185	0.0136181	GAGAUGA	BC053097|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	NM_023525|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	BC060119|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
mm9_v1_chr1_-_175529396_175529434	0.0118168	GAGAUGA	AK143015|Pydc4|623121|pyrin domain containing 4	NM_001177349|Pydc4|623121|pyrin domain containing 4	NM_001177350|Pydc4|623121|pyrin domain containing 4
mm9_v1_chr8_+_95484831_95484945	0.0104992	GAGAUGA	AY525777|Slc6a2|20538|solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	AY525778|Slc6a2|20538|solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	NM_009209|Slc6a2|20538|solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2
mm9_v1_chr9_-_20781206_20781236	0.0094653	GAGAUGA	AK170436|S1pr2|14739|sphingosine-1-phosphate receptor 2	AK085114|S1pr2|14739|sphingosine-1-phosphate receptor 2	NM_010333|S1pr2|14739|sphingosine-1-phosphate receptor 2
mm9_v1_chr1_+_145587576_145587576	0.00918507	GAGAUGA	AK142654|Glrx2|69367|glutaredoxin 2 (thioltransferase)	NM_001038594|Glrx2|69367|glutaredoxin 2 (thioltransferase)
mm9_v1_chr19_+_4594318_4594387	0.00891558	GAGAUGA	NM_008797|Pcx|18563|pyruvate carboxylase	L09192|Pcx|18563|pyruvate carboxylase
mm9_v1_chr2_-_153067043_153067211	0.00662454	GAGAUGA	BC037664|Plagl2|54711|pleiomorphic adenoma gene-like 2	BC078453|Plagl2|54711|pleiomorphic adenoma gene-like 2	NM_018807|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK040626|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK133833|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK141713|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK150243|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK129087|Plagl2|54711|pleiomorphic adenoma gene-like 2
mm9_v1_chr2_+_173563060_173563229	0.00644158	GAGAUGA	BC048231|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	NM_019806|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	BC057123|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK050632|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK081908|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AF115504|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK160925|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK172080|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chr19_-_5488150_5488373	0.0052048	GAGAUGA	AF425647|Mus81|71711|MUS81 endonuclease homolog (yeast)	AK145858|Mus81|71711|MUS81 endonuclease homolog (yeast)	AK168514|Mus81|71711|MUS81 endonuclease homolog (yeast)	NM_027877|Mus81|71711|MUS81 endonuclease homolog (yeast)	BC026560|Mus81|71711|MUS81 endonuclease homolog (yeast)
mm9_v1_chr9_-_108551631_108551731	0.00231809	GAGAUGA	AK165028|Arih2|23807|ariadne homolog 2 (Drosophila)	AK149936|Arih2|23807|ariadne homolog 2 (Drosophila)	BC051998|Arih2|23807|ariadne homolog 2 (Drosophila)	BC052422|Arih2|23807|ariadne homolog 2 (Drosophila)	NM_011790|Arih2|23807|ariadne homolog 2 (Drosophila)	AK011094|Arih2|23807|ariadne homolog 2 (Drosophila)	AK168055|Arih2|23807|ariadne homolog 2 (Drosophila)
mm9_v1_chr12_+_88019649_88019727	0.00090505	GAGAUGA	AB284948|Vash1|238328|vasohibin 1	AK090166|Vash1|238328|vasohibin 1	NM_177354|Vash1|238328|vasohibin 1	AK086583|Vash1|238328|vasohibin 1
