mm9_v1_chr4_+_32504409_32504501	24.5479	GCAGCAU	NM_001109661|Bach2|12014|BTB and CNC homology 2	BC131642|Bach2|12014|BTB and CNC homology 2
mm9_v1_chr1_-_133141708_133141776	24.26	GCAGCAU	AF053959|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK005059|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK155534|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK029321|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	BC089605|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	NM_018750|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5
mm9_v1_chr7_-_116925058_116925063	18.7253	GCAGCAU	AK020731|Nrip3|78593|nuclear receptor interacting protein 3	AK083130|Nrip3|78593|nuclear receptor interacting protein 3	NM_020610|Nrip3|78593|nuclear receptor interacting protein 3
mm9_v1_chr1_+_66515003_66515020	16.4585	GCAGCAU	AK043914|Unc80|329178|unc-80 homolog (C. elegans)	FJ210934|Unc80|329178|unc-80 homolog (C. elegans)	NM_175510|Unc80|329178|unc-80 homolog (C. elegans)
mm9_v1_chr16_+_45224449_45224465	15.1702	GCAGCAU	AK041334|Btla|208154|B and T lymphocyte associated	BC108963|Btla|208154|B and T lymphocyte associated	BC108964|Btla|208154|B and T lymphocyte associated	NM_001037719|Btla|208154|B and T lymphocyte associated	NM_177584|Btla|208154|B and T lymphocyte associated	AY293285|Btla|208154|B and T lymphocyte associated
mm9_v1_chr5_-_33196860_33196908	13.7986	GCAGCAU	AK134346|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene	NM_194340|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene
mm9_v1_chr12_-_100139666_100139693	13.611	GCAGCAU	AK081694|Eml5|319670|echinoderm microtubule associated protein like 5	NM_001081191|Eml5|319670|echinoderm microtubule associated protein like 5
mm9_v1_chr3_+_94758936_94758955	13.1691	GCAGCAU	NM_017395|Rfx5|53970|regulatory factor X, 5 (influences HLA class II expression)	AB221679|Rfx5|53970|regulatory factor X, 5 (influences HLA class II expression)	AF209854|Rfx5|53970|regulatory factor X, 5 (influences HLA class II expression)	BC118948|Rfx5|53970|regulatory factor X, 5 (influences HLA class II expression)	BC118949|Rfx5|53970|regulatory factor X, 5 (influences HLA class II expression)
mm9_v1_chr11_+_69831951_69832106	12.5769	GCAGCAU	NM_001109752|Dlg4|13385|discs, large homolog 4 (Drosophila)	NM_007864|Dlg4|13385|discs, large homolog 4 (Drosophila)
mm9_v1_chr7_-_134164627_134164726	12.0265	GCAGCAU	NM_001102563|Prrt2|69017|proline-rich transmembrane protein 2
mm9_v1_chr7_-_28231535_28231646	11.6443	GCAGCAU	AK006254|Spnb4|80297|spectrin beta 4	AB055618|Spnb4|80297|spectrin beta 4	NM_032610|Spnb4|80297|spectrin beta 4	AK147558|Spnb4|80297|spectrin beta 4
mm9_v1_chr9_+_43851466_43851476	11.6328	GCAGCAU	NM_009382|Thy1|21838|thymus cell antigen 1, theta
mm9_v1_chrX_+_155970593_155970627	11.4622	GCAGCAU	AK044001|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene	NM_001033472|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene
mm9_v1_chr5_+_34338625_34338665	11.3486	GCAGCAU	AK147307|Nat8l|269642|N-acetyltransferase 8-like	NM_001001985|Nat8l|269642|N-acetyltransferase 8-like
mm9_v1_chr12_+_112404645_112404765	11.0121	GCAGCAU	AK147304|Traf3|22031|TNF receptor-associated factor 3	NM_001048206|Traf3|22031|TNF receptor-associated factor 3	NM_011632|Traf3|22031|TNF receptor-associated factor 3	U21050|Traf3|22031|TNF receptor-associated factor 3
mm9_v1_chr3_+_151873407_151873495	10.9973	GCAGCAU	AK028418|Fubp1|51886|far upstream element (FUSE) binding protein 1	NM_057172|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK167730|Fubp1|51886|far upstream element (FUSE) binding protein 1	BC023780|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK032517|Fubp1|51886|far upstream element (FUSE) binding protein 1	BC014763|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK029458|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK079204|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK138011|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK166066|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK160815|Fubp1|51886|far upstream element (FUSE) binding protein 1
mm9_v1_chr11_-_116274264_116274379	10.7626	GCAGCAU	AK011693|Rnf157|217340|ring finger protein 157	NM_027258|Rnf157|217340|ring finger protein 157
mm9_v1_chr3_+_84619399_84619498	10.7283	GCAGCAU	BC085184|Fbxw7|50754|F-box and WD-40 domain protein 7	BC060620|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177773|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr4_+_84851330_84851416	10.5539	GCAGCAU	AK044370|Sh3gl2|20404|SH3-domain GRB2-like 2	BC018385|Sh3gl2|20404|SH3-domain GRB2-like 2	NM_019535|Sh3gl2|20404|SH3-domain GRB2-like 2	AK043424|Sh3gl2|20404|SH3-domain GRB2-like 2	AK139337|Sh3gl2|20404|SH3-domain GRB2-like 2	U58886|Sh3gl2|20404|SH3-domain GRB2-like 2
mm9_v1_chr3_+_84668066_84668066	10.1527	GCAGCAU	BC066093|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177774|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr1_+_162836541_162836569	9.91665	GCAGCAU	NM_001024952|Rc3h1|381305|RING CCCH (C3H) domains 1	AK139648|Rc3h1|381305|RING CCCH (C3H) domains 1
mm9_v1_chr8_+_124254462_124254503	9.8062	GCAGCAU	AB024449|Jph3|57340|junctophilin 3	NM_020605|Jph3|57340|junctophilin 3	AK046136|Jph3|57340|junctophilin 3	AK082880|Jph3|57340|junctophilin 3	AK045706|Jph3|57340|junctophilin 3	BC103682|Jph3|57340|junctophilin 3	BC104736|Jph3|57340|junctophilin 3	BC105307|Jph3|57340|junctophilin 3
mm9_v1_chr6_-_127718746_127718746	9.76083	GCAGCAU	BC060250|Prmt8|381813|protein arginine N-methyltransferase 8	NM_201371|Prmt8|381813|protein arginine N-methyltransferase 8
mm9_v1_chr18_-_43847367_43847426	9.63995	GCAGCAU	AK133750|Jakmip2|76217|janus kinase and microtubule interacting protein 2	NM_001163637|Jakmip2|76217|janus kinase and microtubule interacting protein 2
mm9_v1_chr2_+_119722957_119723040	9.6003	GCAGCAU	AK046252|Mga|29808|MAX gene associated	NM_001164274|Mga|29808|MAX gene associated	NM_013720|Mga|29808|MAX gene associated	AK162302|Mga|29808|MAX gene associated	AK032570|Mga|29808|MAX gene associated	AK012050|Mga|29808|MAX gene associated	AK139919|Mga|29808|MAX gene associated	AK172962|Mga|29808|MAX gene associated
mm9_v1_chr7_+_129432585_129432762	9.33461	GCAGCAU	NM_008855|Prkcb|18751|protein kinase C, beta	AK051862|Prkcb|18751|protein kinase C, beta
mm9_v1_chr14_-_109313447_109313461	9.25089	GCAGCAU	NM_199065|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr10_-_70055559_70055571	9.17536	GCAGCAU	NM_001162846|Phyhipl|70911|phytanoyl-CoA hydroxylase interacting protein-like	AK014946|Phyhipl|70911|phytanoyl-CoA hydroxylase interacting protein-like
mm9_v1_chr11_-_87172419_87172533	9.07501	GCAGCAU	AK053696|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	BC138900|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	BC138903|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	NM_177167|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)
mm9_v1_chr2_-_12932442_12932490	9.06598	GCAGCAU	EU399230|C1ql3|227580|C1q-like 3	BC024634|C1ql3|227580|C1q-like 3	NM_153155|C1ql3|227580|C1q-like 3
mm9_v1_chr18_+_64414012_64414029	8.77257	GCAGCAU	AK161482|St8sia3|20451|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	NM_009182|St8sia3|20451|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	AK015874|St8sia3|20451|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
mm9_v1_chr6_+_125165597_125165677	8.71727	GCAGCAU	AK018783|Vamp1|22317|vesicle-associated membrane protein 1	AK037711|Vamp1|22317|vesicle-associated membrane protein 1	AK078156|Vamp1|22317|vesicle-associated membrane protein 1	NM_001080557|Vamp1|22317|vesicle-associated membrane protein 1	NM_009496|Vamp1|22317|vesicle-associated membrane protein 1	BC057587|Vamp1|22317|vesicle-associated membrane protein 1	BC049902|Vamp1|22317|vesicle-associated membrane protein 1	U61751|Vamp1|22317|vesicle-associated membrane protein 1
mm9_v1_chr3_+_106904470_106904486	8.66917	GCAGCAU	AK044342|Kcna2|16490|potassium voltage-gated channel, shaker-related subfamily, member 2	NM_008417|Kcna2|16490|potassium voltage-gated channel, shaker-related subfamily, member 2
mm9_v1_chr10_-_126700387_126700418	8.59374	GCAGCAU	AK220479|Kif5a|16572|kinesin family member 5A	AK140769|Kif5a|16572|kinesin family member 5A	NM_001039000|Kif5a|16572|kinesin family member 5A	NM_008447|Kif5a|16572|kinesin family member 5A
mm9_v1_chr6_+_124948454_124948454	8.53713	GCAGCAU	BC065170|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_001145927|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr1_+_59969845_59969868	8.51174	GCAGCAU	AK154812|Fam117b|72750|family with sequence similarity 117, member B	NM_001037725|Fam117b|72750|family with sequence similarity 117, member B
mm9_v1_chr1_-_25886551_25886551	8.36627	GCAGCAU	BC099951|Bai3|210933|brain-specific angiogenesis inhibitor 3	NM_175642|Bai3|210933|brain-specific angiogenesis inhibitor 3
mm9_v1_chr11_+_98769464_98769464	8.26763	GCAGCAU	AJ009559|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AJ223087|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	NM_011799|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)
mm9_v1_chr2_+_5872500_5872551	8.14628	GCAGCAU	BC049622|Upf2|326622|UPF2 regulator of nonsense transcripts homolog (yeast)	NM_001081132|Upf2|326622|UPF2 regulator of nonsense transcripts homolog (yeast)	BC138358|Upf2|326622|UPF2 regulator of nonsense transcripts homolog (yeast)	BC138359|Upf2|326622|UPF2 regulator of nonsense transcripts homolog (yeast)
mm9_v1_chr6_+_124948627_124948627	8.03159	GCAGCAU	AK148352|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_001145926|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr3_+_88987108_88987146	7.94352	GCAGCAU	BC068123|Fam189b|68521|family with sequence similarity 189, member B	BC088990|Fam189b|68521|family with sequence similarity 189, member B	NM_001014995|Fam189b|68521|family with sequence similarity 189, member B
mm9_v1_chr11_+_98769162_98769202	7.94056	GCAGCAU	AK162669|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK075975|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK085020|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK012192|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	BC052434|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	NM_001025779|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)
mm9_v1_chr10_-_70062025_70062087	7.9017	GCAGCAU	AK032166|Phyhipl|70911|phytanoyl-CoA hydroxylase interacting protein-like	AK083011|Phyhipl|70911|phytanoyl-CoA hydroxylase interacting protein-like	NM_178621|Phyhipl|70911|phytanoyl-CoA hydroxylase interacting protein-like
mm9_v1_chr16_-_46010510_46010548	7.8917	GCAGCAU	NM_001134480|Plcxd2|433022|phosphatidylinositol-specific phospholipase C, X domain containing 2
mm9_v1_chr6_+_124946723_124946772	7.88148	GCAGCAU	AK082984|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_175696|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr3_+_88769733_88769733	7.85232	GCAGCAU	NM_138679|Ash1l|192195|ash1 (absent, small, or homeotic)-like (Drosophila)
mm9_v1_chr15_-_57907967_57908070	7.80439	GCAGCAU	AK220508|Zhx1|22770|zinc fingers and homeoboxes 1	NM_001042438|Zhx1|22770|zinc fingers and homeoboxes 1	NM_009572|Zhx1|22770|zinc fingers and homeoboxes 1	AK051410|Zhx1|22770|zinc fingers and homeoboxes 1
mm9_v1_chr10_-_20880559_20880789	7.71913	GCAGCAU	X02774|Myb|17863|myeloblastosis oncogene	AK132250|Myb|17863|myeloblastosis oncogene	AK137965|Myb|17863|myeloblastosis oncogene	BC011513|Myb|17863|myeloblastosis oncogene	AK088079|Myb|17863|myeloblastosis oncogene	AK088598|Myb|17863|myeloblastosis oncogene	M12848|Myb|17863|myeloblastosis oncogene	NM_001198914|Myb|17863|myeloblastosis oncogene	NM_010848|Myb|17863|myeloblastosis oncogene
mm9_v1_chr2_+_65508501_65508501	7.67243	GCAGCAU	NM_001099298|Scn2a1|110876|sodium channel, voltage-gated, type II, alpha 1
mm9_v1_chr11_+_80290509_80290569	7.52121	GCAGCAU	AK142868|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK086621|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK141549|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK169667|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK079557|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC050768|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	NM_009871|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK039999|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC058697|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC046823|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK048617|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm9_v1_chr6_+_56664888_56664904	7.40576	GCAGCAU	AK147365|Avl9|78937|AVL9 homolog (S. cerevisiase)	NM_030235|Avl9|78937|AVL9 homolog (S. cerevisiase)
mm9_v1_chr11_+_72861327_72861399	7.34558	GCAGCAU	NM_025818|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK163780|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK017496|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK020130|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK165317|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK004766|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK033682|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153152|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153241|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC118943|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK011450|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC098495|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene
mm9_v1_chr7_+_121558695_121558794	7.31213	GCAGCAU	NM_011055|Pde3b|18576|phosphodiesterase 3B, cGMP-inhibited	AF547435|Pde3b|18576|phosphodiesterase 3B, cGMP-inhibited
mm9_v1_chr2_-_7002344_7002370	7.28468	GCAGCAU	NM_001110229|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110230|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160292|Celf2|14007|CUGBP, Elav-like family member 2	AK159996|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr13_+_109444370_109444370	7.16369	GCAGCAU	AF536978|Pde4d|238871|phosphodiesterase 4D, cAMP specific	NM_011056|Pde4d|238871|phosphodiesterase 4D, cAMP specific
mm9_v1_chr17_+_45692647_45692701	7.12825	GCAGCAU	AK008843|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK151450|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK151692|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK011965|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	BC030923|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	NM_008690|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK153248|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK088585|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon
mm9_v1_chr19_-_14672472_14672537	7.10988	GCAGCAU	AK017548|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)	NM_011600|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chr5_+_35104373_35104397	7.0708	GCAGCAU	AK042204|Htt|15194|huntingtin	NM_010414|Htt|15194|huntingtin
mm9_v1_chr14_-_27783615_27783757	7.00724	GCAGCAU	AK030445|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK045438|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK088080|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AY113705|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK033566|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK146356|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK049307|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	NM_145221|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	BC063751|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm9_v1_chr16_+_44173356_44173509	6.9443	GCAGCAU	NM_001029889|Gm608|207806|predicted gene 608
mm9_v1_chr7_+_63305516_63305584	6.90922	GCAGCAU	NM_010418|Herc2|15204|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2
mm9_v1_chr6_+_143115732_143115821	6.89169	GCAGCAU	AK051039|Etnk1|75320|ethanolamine kinase 1	AK044502|Etnk1|75320|ethanolamine kinase 1	NM_029250|Etnk1|75320|ethanolamine kinase 1	AK016135|Etnk1|75320|ethanolamine kinase 1	AK031560|Etnk1|75320|ethanolamine kinase 1	AK033268|Etnk1|75320|ethanolamine kinase 1	AK164928|Etnk1|75320|ethanolamine kinase 1
mm9_v1_chr11_-_115465172_115465241	6.81354	GCAGCAU	BC056424|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	BC110676|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK082327|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK147882|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK132183|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK031086|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK122212|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	BC085617|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	NM_173048|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3
mm9_v1_chr6_-_122287014_122287032	6.66646	GCAGCAU	U63386|Phc1|13619|polyhomeotic-like 1 (Drosophila)	NM_001042623|Phc1|13619|polyhomeotic-like 1 (Drosophila)	NM_007905|Phc1|13619|polyhomeotic-like 1 (Drosophila)
mm9_v1_chr3_+_103379203_103379300	6.45004	GCAGCAU	NM_018800|Syt6|54524|synaptotagmin VI	BC050760|Syt6|54524|synaptotagmin VI	AB026803|Syt6|54524|synaptotagmin VI	AB026809|Syt6|54524|synaptotagmin VI	AB026810|Syt6|54524|synaptotagmin VI
mm9_v1_chr3_-_108218411_108218411	6.44554	GCAGCAU	AB028499|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	NM_001004177|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	NM_017392|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)
mm9_v1_chr12_-_105990160_105990320	6.36491	GCAGCAU	BC019805|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)	AF430845|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)	NM_148948|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)
mm9_v1_chr2_-_160934743_160934810	6.3551	GCAGCAU	BC145629|Chd6|71389|chromodomain helicase DNA binding protein 6	BC150806|Chd6|71389|chromodomain helicase DNA binding protein 6	AK018129|Chd6|71389|chromodomain helicase DNA binding protein 6	AK040495|Chd6|71389|chromodomain helicase DNA binding protein 6	AK142177|Chd6|71389|chromodomain helicase DNA binding protein 6	AK086807|Chd6|71389|chromodomain helicase DNA binding protein 6	AK162083|Chd6|71389|chromodomain helicase DNA binding protein 6	NM_173368|Chd6|71389|chromodomain helicase DNA binding protein 6	AK080892|Chd6|71389|chromodomain helicase DNA binding protein 6	AK080927|Chd6|71389|chromodomain helicase DNA binding protein 6
mm9_v1_chr9_-_21856445_21856470	6.34715	GCAGCAU	U29148|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	BC052097|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	AK090281|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	NM_010487|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)
mm9_v1_chr7_-_89079335_89079355	6.2967	GCAGCAU	AK045542|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	NM_013886|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3
mm9_v1_chr6_+_92041408_92041534	6.25678	GCAGCAU	NM_011630|Nr2c2|22026|nuclear receptor subfamily 2, group C, member 2	AK157305|Nr2c2|22026|nuclear receptor subfamily 2, group C, member 2
mm9_v1_chr2_+_129838084_129838109	6.20371	GCAGCAU	L10385|Tgm3|21818|transglutaminase 3, E polypeptide	BC129890|Tgm3|21818|transglutaminase 3, E polypeptide	BC129891|Tgm3|21818|transglutaminase 3, E polypeptide	NM_009374|Tgm3|21818|transglutaminase 3, E polypeptide
mm9_v1_chr9_+_72380046_72380064	6.09803	GCAGCAU	AK090370|Rfx7|319758|regulatory factor X, 7	NM_001033536|Rfx7|319758|regulatory factor X, 7	AK144999|Rfx7|319758|regulatory factor X, 7
mm9_v1_chr12_-_56403949_56403990	6.07308	GCAGCAU	BC024754|Ppp2r3c|59032|protein phosphatase 2, regulatory subunit B'', gamma	AK028063|Ppp2r3c|59032|protein phosphatase 2, regulatory subunit B'', gamma	AB041577|Ppp2r3c|59032|protein phosphatase 2, regulatory subunit B'', gamma	AK033405|Ppp2r3c|59032|protein phosphatase 2, regulatory subunit B'', gamma	AK163192|Ppp2r3c|59032|protein phosphatase 2, regulatory subunit B'', gamma	AK168298|Ppp2r3c|59032|protein phosphatase 2, regulatory subunit B'', gamma	NM_021529|Ppp2r3c|59032|protein phosphatase 2, regulatory subunit B'', gamma
mm9_v1_chr19_+_23833310_23833547	6.00958	GCAGCAU	NM_177034|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147583|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147623|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	BC141181|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1
mm9_v1_chr4_-_44181148_44181210	5.91978	GCAGCAU	AK044324|Rnf38|73469|ring finger protein 38	NM_001038993|Rnf38|73469|ring finger protein 38	AK147608|Rnf38|73469|ring finger protein 38
mm9_v1_chr2_+_97307652_97307938	5.91497	GCAGCAU	AK032467|Lrrc4c|241568|leucine rich repeat containing 4C	AK032088|Lrrc4c|241568|leucine rich repeat containing 4C	NM_178725|Lrrc4c|241568|leucine rich repeat containing 4C	BC094588|Lrrc4c|241568|leucine rich repeat containing 4C
mm9_v1_chr18_+_21103125_21103125	5.8724	GCAGCAU	AK050395|Rnf125|67664|ring finger protein 125	NM_026301|Rnf125|67664|ring finger protein 125
mm9_v1_chr10_+_92623587_92623703	5.87012	GCAGCAU	AK078325|Cdk17|237459|cyclin-dependent kinase 17	NM_146239|Cdk17|237459|cyclin-dependent kinase 17	BC064815|Cdk17|237459|cyclin-dependent kinase 17
mm9_v1_chr2_-_37502738_37502804	5.8647	GCAGCAU	X84692|Strbp|20744|spermatid perinuclear RNA binding protein	NM_009261|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr9_-_44689356_44689381	5.8404	GCAGCAU	NM_001081049|Mll1|214162|myeloid/lymphoid or mixed-lineage leukemia 1
mm9_v1_chr1_-_54983211_54983245	5.76324	GCAGCAU	AK038343|Ankrd44|329154|ankyrin repeat domain 44	NM_001081433|Ankrd44|329154|ankyrin repeat domain 44
mm9_v1_chr17_+_86567003_86567165	5.73111	GCAGCAU	AK082438|Prkce|18754|protein kinase C, epsilon	NM_011104|Prkce|18754|protein kinase C, epsilon	AK042994|Prkce|18754|protein kinase C, epsilon
mm9_v1_chrX_-_153929935_153930011	5.68209	GCAGCAU	AK017775|Sms|20603|spermine synthase	Y09419|Sms|20603|spermine synthase	BC046623|Sms|20603|spermine synthase	AF031486|Sms|20603|spermine synthase	AK049787|Sms|20603|spermine synthase	AK160637|Sms|20603|spermine synthase	AK149929|Sms|20603|spermine synthase	AK002687|Sms|20603|spermine synthase	AK049780|Sms|20603|spermine synthase	AK136798|Sms|20603|spermine synthase	AK011542|Sms|20603|spermine synthase	AK160659|Sms|20603|spermine synthase	NM_009214|Sms|20603|spermine synthase	AK166665|Sms|20603|spermine synthase
mm9_v1_chr7_-_80686630_80686631	5.67486	GCAGCAU	AK133596|Chd2|244059|chromodomain helicase DNA binding protein 2	AK040559|Chd2|244059|chromodomain helicase DNA binding protein 2	AK132638|Chd2|244059|chromodomain helicase DNA binding protein 2	AK136686|Chd2|244059|chromodomain helicase DNA binding protein 2	NM_001081345|Chd2|244059|chromodomain helicase DNA binding protein 2
mm9_v1_chr1_-_63160764_63160840	5.60033	GCAGCAU	AK049468|Ino80d|227195|INO80 complex subunit D	NM_001081436|Ino80d|227195|INO80 complex subunit D	NM_001114609|Ino80d|227195|INO80 complex subunit D
mm9_v1_chr12_+_54349663_54349663	5.58609	GCAGCAU	AF173871|Npas3|27386|neuronal PAS domain protein 3	BC120885|Npas3|27386|neuronal PAS domain protein 3	BC148199|Npas3|27386|neuronal PAS domain protein 3	NM_013780|Npas3|27386|neuronal PAS domain protein 3
mm9_v1_chrX_+_130829763_130829919	5.5079	GCAGCAU	BC042623|Tmem35|67564|transmembrane protein 35	NM_026239|Tmem35|67564|transmembrane protein 35	BC050880|Tmem35|67564|transmembrane protein 35
mm9_v1_chr6_-_148894953_148895000	5.4392	GCAGCAU	BC076599|Fam60a|56306|family with sequence similarity 60, member A	NM_019643|Fam60a|56306|family with sequence similarity 60, member A	AK166569|Fam60a|56306|family with sequence similarity 60, member A	AK145384|Fam60a|56306|family with sequence similarity 60, member A
mm9_v1_chr6_+_125095236_125095314	5.42001	GCAGCAU	AK044382|Iffo1|320678|intermediate filament family orphan 1	AK163571|Iffo1|320678|intermediate filament family orphan 1	NM_178787|Iffo1|320678|intermediate filament family orphan 1	AK028273|Iffo1|320678|intermediate filament family orphan 1	AK044709|Iffo1|320678|intermediate filament family orphan 1	AK053568|Iffo1|320678|intermediate filament family orphan 1	AK044728|Iffo1|320678|intermediate filament family orphan 1	NM_001039669|Iffo1|320678|intermediate filament family orphan 1	AK031129|Iffo1|320678|intermediate filament family orphan 1
mm9_v1_chr7_-_104886756_104886798	5.41606	GCAGCAU	AK075757|Aqp11|66333|aquaporin 11	NM_175105|Aqp11|66333|aquaporin 11	AK006005|Aqp11|66333|aquaporin 11	AK137326|Aqp11|66333|aquaporin 11
mm9_v1_chr2_-_7317824_7317824	5.29409	GCAGCAU	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr2_+_131088210_131088303	5.26552	GCAGCAU	AK082821|Pank2|74450|pantothenate kinase 2	NM_153501|Pank2|74450|pantothenate kinase 2	AK159175|Pank2|74450|pantothenate kinase 2	AK154080|Pank2|74450|pantothenate kinase 2	BC106184|Pank2|74450|pantothenate kinase 2	AK154023|Pank2|74450|pantothenate kinase 2
mm9_v1_chr11_+_72832489_72832515	5.23332	GCAGCAU	AK144483|Camkk1|55984|calcium/calmodulin-dependent protein kinase kinase 1, alpha	NM_018883|Camkk1|55984|calcium/calmodulin-dependent protein kinase kinase 1, alpha
mm9_v1_chr3_+_84756090_84756352	5.18522	GCAGCAU	AF391192|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_080428|Fbxw7|50754|F-box and WD-40 domain protein 7	AF427101|Fbxw7|50754|F-box and WD-40 domain protein 7	BC131648|Fbxw7|50754|F-box and WD-40 domain protein 7	AB221593|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr1_+_158488917_158488917	5.14389	GCAGCAU	NM_001136104|Abl2|11352|v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)	NM_009595|Abl2|11352|v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)
mm9_v1_chr3_+_87946259_87946350	5.12069	GCAGCAU	AK155778|Mef2d|17261|myocyte enhancer factor 2D	NM_133665|Mef2d|17261|myocyte enhancer factor 2D	AK141270|Mef2d|17261|myocyte enhancer factor 2D	BC011070|Mef2d|17261|myocyte enhancer factor 2D
mm9_v1_chr5_+_28492235_28492251	5.08794	GCAGCAU	AK157766|En2|13799|engrailed 2	NM_010134|En2|13799|engrailed 2
mm9_v1_chr2_+_38863553_38863815	5.06383	GCAGCAU	BC024482|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	AK008255|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	NM_028809|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	AK181564|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like
mm9_v1_chr11_+_108781661_108781720	5.05757	GCAGCAU	AK142333|Axin2|12006|axin2	NM_015732|Axin2|12006|axin2	BC057338|Axin2|12006|axin2	AK049192|Axin2|12006|axin2
mm9_v1_chr1_-_135975681_135975731	5.04332	GCAGCAU	BC132259|Btg2|12227|B-cell translocation gene 2, anti-proliferative	BC138639|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK088976|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169436|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK133796|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169269|Btg2|12227|B-cell translocation gene 2, anti-proliferative	NM_007570|Btg2|12227|B-cell translocation gene 2, anti-proliferative
mm9_v1_chr5_+_31014229_31014273	5.03503	GCAGCAU	AK044866|Dpysl5|65254|dihydropyrimidinase-like 5	BC065054|Dpysl5|65254|dihydropyrimidinase-like 5	NM_023047|Dpysl5|65254|dihydropyrimidinase-like 5	BC103789|Dpysl5|65254|dihydropyrimidinase-like 5
mm9_v1_chr6_+_61130318_61130318	5.02749	GCAGCAU	NM_001164316|Fam190a|232035|family with sequence similarity 190, member A	NM_183310|Fam190a|232035|family with sequence similarity 190, member A
mm9_v1_chr2_-_7317513_7317626	4.97233	GCAGCAU	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr9_+_121628258_121628322	4.93337	GCAGCAU	AK163916|Nktr|18087|natural killer tumor recognition sequence	L04289|Nktr|18087|natural killer tumor recognition sequence	NM_010918|Nktr|18087|natural killer tumor recognition sequence
mm9_v1_chr16_-_64786146_64786199	4.92333	GCAGCAU	BC068018|Zfp654|72020|zinc finger protein 654	NM_028059|Zfp654|72020|zinc finger protein 654	AK005508|Zfp654|72020|zinc finger protein 654
mm9_v1_chr1_-_99666564_99666675	4.92154	GCAGCAU	AK087712|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK149804|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK129140|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK166095|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	NM_173760|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2
mm9_v1_chr10_+_127529818_127529845	4.90825	GCAGCAU	AK133149|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	BC048415|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	NM_054078|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A
mm9_v1_chr6_+_5675638_5675910	4.86605	GCAGCAU	AK158589|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	NM_001191023|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	NM_001191025|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	NM_001191026|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	NM_001191027|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	NM_010063|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	AF063229|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	AF063230|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	GU992206|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	GU992207|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1	BC051992|Dync1i1|13426|dynein cytoplasmic 1 intermediate chain 1
mm9_v1_chr11_-_5344795_5344912	4.83795	GCAGCAU	AK163639|Znrf3|407821|zinc and ring finger 3	NM_001080924|Znrf3|407821|zinc and ring finger 3
mm9_v1_chr11_-_102417457_102417523	4.78625	GCAGCAU	AK135410|Gpatch8|237943|G patch domain containing 8	NM_001159492|Gpatch8|237943|G patch domain containing 8
mm9_v1_chr9_+_107838164_107838328	4.76268	GCAGCAU	AK085143|Camkv|235604|CaM kinase-like vesicle-associated	NM_145621|Camkv|235604|CaM kinase-like vesicle-associated	BC017634|Camkv|235604|CaM kinase-like vesicle-associated	BC111033|Camkv|235604|CaM kinase-like vesicle-associated	AK147323|Camkv|235604|CaM kinase-like vesicle-associated	BC022169|Camkv|235604|CaM kinase-like vesicle-associated	BC086762|Camkv|235604|CaM kinase-like vesicle-associated
mm9_v1_chr2_-_165151935_165152001	4.73107	GCAGCAU	AK047040|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK050823|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK053574|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK032033|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	BC023954|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK038097|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK045428|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK129023|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	NM_080287|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	NM_207706|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)
mm9_v1_chr1_-_171677653_171677778	4.69132	GCAGCAU	AB004315|Rgs4|19736|regulator of G-protein signaling 4	BC003882|Rgs4|19736|regulator of G-protein signaling 4	BC055293|Rgs4|19736|regulator of G-protein signaling 4	AK030536|Rgs4|19736|regulator of G-protein signaling 4	AK039134|Rgs4|19736|regulator of G-protein signaling 4	DQ346659|Rgs4|19736|regulator of G-protein signaling 4	DQ346660|Rgs4|19736|regulator of G-protein signaling 4	DQ346661|Rgs4|19736|regulator of G-protein signaling 4	NM_009062|Rgs4|19736|regulator of G-protein signaling 4
mm9_v1_chr9_-_42280256_42280323	4.672	GCAGCAU	BC139386|Tbcel|272589|tubulin folding cofactor E-like	BC139387|Tbcel|272589|tubulin folding cofactor E-like	AK077017|Tbcel|272589|tubulin folding cofactor E-like	NM_173038|Tbcel|272589|tubulin folding cofactor E-like	AK084854|Tbcel|272589|tubulin folding cofactor E-like
mm9_v1_chr16_+_32332294_32332380	4.60204	GCAGCAU	NM_177633|Ubxn7|224111|UBX domain protein 7	AK147730|Ubxn7|224111|UBX domain protein 7	BC062904|Ubxn7|224111|UBX domain protein 7
mm9_v1_chr2_+_156022382_156022502	4.59854	GCAGCAU	NM_172674|Phf20|228829|PHD finger protein 20	AK045309|Phf20|228829|PHD finger protein 20	AK033017|Phf20|228829|PHD finger protein 20	AK038573|Phf20|228829|PHD finger protein 20	AK142424|Phf20|228829|PHD finger protein 20	BC060121|Phf20|228829|PHD finger protein 20
mm9_v1_chr2_-_6805937_6806041	4.58228	GCAGCAU	AK042749|Celf2|14007|CUGBP, Elav-like family member 2	AK164112|Celf2|14007|CUGBP, Elav-like family member 2	AK052102|Celf2|14007|CUGBP, Elav-like family member 2	AK135166|Celf2|14007|CUGBP, Elav-like family member 2	BC026856|Celf2|14007|CUGBP, Elav-like family member 2	AF090697|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110228|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160293|Celf2|14007|CUGBP, Elav-like family member 2	NM_010160|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr1_+_140860285_140860402	4.58139	GCAGCAU	NM_001166501|Dennd1b|329260|DENN/MADD domain containing 1B	BC042698|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr1_+_20880692_20880724	4.52773	GCAGCAU	AK147376|Paqr8|74229|progestin and adipoQ receptor family member VIII	BC059813|Paqr8|74229|progestin and adipoQ receptor family member VIII	NM_028829|Paqr8|74229|progestin and adipoQ receptor family member VIII
mm9_v1_chrX_+_140127827_140127856	4.51584	GCAGCAU	AF082297|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195046|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195047|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AJ496262|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AJ496263|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AM943853|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AM943854|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr12_-_4038848_4038914	4.47646	GCAGCAU	BC147643|Efr3b|668212|EFR3 homolog B (S. cerevisiae)	BC157968|Efr3b|668212|EFR3 homolog B (S. cerevisiae)	NM_001082483|Efr3b|668212|EFR3 homolog B (S. cerevisiae)
mm9_v1_chr12_+_12268901_12269011	4.45953	GCAGCAU	NM_001146119|Fam49a|76820|family with sequence similarity 49, member A	NM_029758|Fam49a|76820|family with sequence similarity 49, member A	AK047142|Fam49a|76820|family with sequence similarity 49, member A	BC049664|Fam49a|76820|family with sequence similarity 49, member A
mm9_v1_chr14_-_70205351_70205356	4.41116	GCAGCAU	AK021405|Rhobtb2|246710|Rho-related BTB domain containing 2	NM_153514|Rhobtb2|246710|Rho-related BTB domain containing 2
mm9_v1_chr4_-_148001104_148001104	4.36035	GCAGCAU	NM_001003898|Tardbp|230908|TAR DNA binding protein	NM_001003899|Tardbp|230908|TAR DNA binding protein	NM_001008545|Tardbp|230908|TAR DNA binding protein	NM_001008546|Tardbp|230908|TAR DNA binding protein	NM_145556|Tardbp|230908|TAR DNA binding protein
mm9_v1_chr19_+_8738494_8738608	4.35439	GCAGCAU	AK138282|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	NM_001112697|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	NM_007698|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	BC094242|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	AJ006521|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS
mm9_v1_chr13_-_41454358_41454379	4.35042	GCAGCAU	AK054179|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AK033729|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	NM_017464|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9
mm9_v1_chr18_+_68459987_68460081	4.31103	GCAGCAU	AK084393|Rnmt|67897|RNA (guanine-7-) methyltransferase	NM_001170953|Rnmt|67897|RNA (guanine-7-) methyltransferase	NM_026440|Rnmt|67897|RNA (guanine-7-) methyltransferase	AK011300|Rnmt|67897|RNA (guanine-7-) methyltransferase	AK082331|Rnmt|67897|RNA (guanine-7-) methyltransferase	AK031780|Rnmt|67897|RNA (guanine-7-) methyltransferase	AK015403|Rnmt|67897|RNA (guanine-7-) methyltransferase	BC021794|Rnmt|67897|RNA (guanine-7-) methyltransferase
mm9_v1_chr4_-_44180323_44180519	4.29948	GCAGCAU	BC062976|Rnf38|73469|ring finger protein 38	BC060730|Rnf38|73469|ring finger protein 38	NM_175201|Rnf38|73469|ring finger protein 38	AK006888|Rnf38|73469|ring finger protein 38
mm9_v1_chr15_-_93167308_93167408	4.26534	GCAGCAU	AK148634|Yaf2|67057|YY1 associated factor 2	AB100452|Yaf2|67057|YY1 associated factor 2	AB100453|Yaf2|67057|YY1 associated factor 2	AK005008|Yaf2|67057|YY1 associated factor 2	AK011702|Yaf2|67057|YY1 associated factor 2	NM_024189|Yaf2|67057|YY1 associated factor 2
mm9_v1_chr9_-_62384846_62384857	4.23186	GCAGCAU	AK087414|Coro2b|235431|coronin, actin binding protein, 2B	NM_175484|Coro2b|235431|coronin, actin binding protein, 2B
mm9_v1_chr2_-_114027142_114027208	4.23133	GCAGCAU	AK164226|Zfp770|228491|zinc finger protein 770	AK032578|Zfp770|228491|zinc finger protein 770	AK077547|Zfp770|228491|zinc finger protein 770	NM_175466|Zfp770|228491|zinc finger protein 770	AK044261|Zfp770|228491|zinc finger protein 770	AK043843|Zfp770|228491|zinc finger protein 770
mm9_v1_chr3_+_146515330_146515360	4.1934	GCAGCAU	NM_027594|Ttll7|70892|tubulin tyrosine ligase-like family, member 7
mm9_v1_chr11_-_90252228_90252237	4.1718	GCAGCAU	NM_172563|Hlf|217082|hepatic leukemia factor
mm9_v1_chr1_-_97564139_97564174	4.01302	GCAGCAU	BC060112|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	AJ223956|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_001159745|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_009183|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	X86000|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm9_v1_chr12_-_11443284_11443537	4.00074	GCAGCAU	BC046226|Vsnl1|26950|visinin-like 1	AK144454|Vsnl1|26950|visinin-like 1	AK160224|Vsnl1|26950|visinin-like 1	AJ489331|Vsnl1|26950|visinin-like 1	NM_012038|Vsnl1|26950|visinin-like 1
mm9_v1_chr3_-_104315778_104315782	3.98526	GCAGCAU	AK036116|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2	NM_001025067|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chr1_+_140864297_140864301	3.95596	GCAGCAU	AK155727|Dennd1b|329260|DENN/MADD domain containing 1B	NM_181347|Dennd1b|329260|DENN/MADD domain containing 1B	BC141388|Dennd1b|329260|DENN/MADD domain containing 1B	BC141389|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chrX_-_133403050_133403118	3.94123	GCAGCAU	BC107383|Rab9b|319642|RAB9B, member RAS oncogene family	AK034442|Rab9b|319642|RAB9B, member RAS oncogene family	NM_176971|Rab9b|319642|RAB9B, member RAS oncogene family	AK049693|Rab9b|319642|RAB9B, member RAS oncogene family
mm9_v1_chr18_-_38129384_38129452	3.94061	GCAGCAU	BC057367|Fchsd1|319262|FCH and double SH3 domains 1	NM_175684|Fchsd1|319262|FCH and double SH3 domains 1	BC052886|Fchsd1|319262|FCH and double SH3 domains 1	AK154732|Fchsd1|319262|FCH and double SH3 domains 1
mm9_v1_chr3_+_87329497_87329593	3.8886	GCAGCAU	NM_001083318|Etv3|27049|ets variant gene 3	NM_012051|Etv3|27049|ets variant gene 3	AF218539|Etv3|27049|ets variant gene 3	AK147552|Etv3|27049|ets variant gene 3	AK163509|Etv3|27049|ets variant gene 3	AK155080|Etv3|27049|ets variant gene 3	AK089640|Etv3|27049|ets variant gene 3	AK156824|Etv3|27049|ets variant gene 3	AK155957|Etv3|27049|ets variant gene 3	BC078636|Etv3|27049|ets variant gene 3	BC057151|Etv3|27049|ets variant gene 3
mm9_v1_chr14_+_57506630_57506655	3.88557	GCAGCAU	NM_029498|Zmym2|76007|zinc finger, MYM-type 2	BC141403|Zmym2|76007|zinc finger, MYM-type 2
mm9_v1_chr19_-_47993687_47993788	3.8229	GCAGCAU	AK171522|Itprip|414801|inositol 1,4,5-triphosphate receptor interacting protein	AK171539|Itprip|414801|inositol 1,4,5-triphosphate receptor interacting protein	AK014762|Itprip|414801|inositol 1,4,5-triphosphate receptor interacting protein	AK220222|Itprip|414801|inositol 1,4,5-triphosphate receptor interacting protein	AK165192|Itprip|414801|inositol 1,4,5-triphosphate receptor interacting protein	AK171911|Itprip|414801|inositol 1,4,5-triphosphate receptor interacting protein	BC063749|Itprip|414801|inositol 1,4,5-triphosphate receptor interacting protein	AK014581|Wdr96|70806|WD repeat domain 96	AK160686|Itprip|414801|inositol 1,4,5-triphosphate receptor interacting protein	NM_001001738|Itprip|414801|inositol 1,4,5-triphosphate receptor interacting protein
mm9_v1_chr12_-_119539909_119539930	3.8002	GCAGCAU	NM_001166385|Sp4|20688|trans-acting transcription factor 4	NM_009239|Sp4|20688|trans-acting transcription factor 4
mm9_v1_chr2_+_149656518_149656618	3.791	GCAGCAU	NM_001085521|Tmem90b|433485|transmembrane protein 90B
mm9_v1_chr5_+_151476361_151476427	3.78896	GCAGCAU	AY102267|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)	NM_175310|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
mm9_v1_chr6_-_82889694_82889743	3.78489	GCAGCAU	AB021291|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC057048|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC090625|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK047067|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC094567|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK035993|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK143196|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	NM_001113481|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	NM_011350|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm9_v1_chr1_+_194014677_194014800	3.75525	GCAGCAU	AK140193|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_001038607|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_010600|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	U04294|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109012|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109013|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm9_v1_chr7_+_16715637_16715696	3.74789	GCAGCAU	BC058704|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2	NM_148946|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2	BC080277|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2
mm9_v1_chr12_+_72116953_72117066	3.74581	GCAGCAU	NM_001081195|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	BC025436|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	AK050594|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	AK087354|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	BC080780|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	BC058209|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	AY116674|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)
mm9_v1_chr5_+_33361386_33361464	3.73561	GCAGCAU	NM_011738|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm9_v1_chrX_+_109714134_109714134	3.73511	GCAGCAU	AK038956|Zfp711|245595|zinc finger protein 711	NM_177747|Zfp711|245595|zinc finger protein 711
mm9_v1_chr1_+_107886982_107886982	3.69854	GCAGCAU	AK046562|Zcchc2|227449|zinc finger, CCHC domain containing 2	NM_001122675|Zcchc2|227449|zinc finger, CCHC domain containing 2	NM_001122676|Zcchc2|227449|zinc finger, CCHC domain containing 2
mm9_v1_chr5_+_73882264_73882364	3.69197	GCAGCAU	NM_001190733|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_178896|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	AK033559|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137627|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137628|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC144794|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC060213|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC108346|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr16_-_91011339_91011552	3.66438	GCAGCAU	NM_001045515|Synj1|104015|synaptojanin 1	NM_001164483|Synj1|104015|synaptojanin 1
mm9_v1_chrX_-_138159759_138159833	3.62908	GCAGCAU	BC060235|Irs4|16370|insulin receptor substrate 4	NM_010572|Irs4|16370|insulin receptor substrate 4	BC150782|Irs4|16370|insulin receptor substrate 4
mm9_v1_chr1_-_134539434_134539434	3.61594	GCAGCAU	NM_001160316|Nfasc|269116|neurofascin
mm9_v1_chr18_-_10029925_10030160	3.58142	GCAGCAU	AB034633|Usp14|59025|ubiquitin specific peptidase 14	BC050197|Usp14|59025|ubiquitin specific peptidase 14	AK045909|Usp14|59025|ubiquitin specific peptidase 14	BC005571|Usp14|59025|ubiquitin specific peptidase 14	AK029977|Usp14|59025|ubiquitin specific peptidase 14	AK160215|Usp14|59025|ubiquitin specific peptidase 14	AK011322|Usp14|59025|ubiquitin specific peptidase 14	AK172477|Usp14|59025|ubiquitin specific peptidase 14	AK170933|Usp14|59025|ubiquitin specific peptidase 14	NM_001038589|Usp14|59025|ubiquitin specific peptidase 14	NM_021522|Usp14|59025|ubiquitin specific peptidase 14
mm9_v1_chrX_+_139997806_139997811	3.53935	GCAGCAU	NM_008778|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	BC053403|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr9_-_99469275_99469317	3.52002	GCAGCAU	BC038866|Armc8|74125|armadillo repeat containing 8	AK004793|Armc8|74125|armadillo repeat containing 8	NM_001166138|Armc8|74125|armadillo repeat containing 8	NM_028768|Armc8|74125|armadillo repeat containing 8
mm9_v1_chr1_-_134603848_134603902	3.4894	GCAGCAU	AK129207|Nfasc|269116|neurofascin	NM_001160318|Nfasc|269116|neurofascin
mm9_v1_chr13_-_36826245_36826363	3.48742	GCAGCAU	AK161859|Nrn1|68404|neuritin 1	BC035531|Nrn1|68404|neuritin 1	NM_153529|Nrn1|68404|neuritin 1
mm9_v1_chr5_-_144493077_144493148	3.4719	GCAGCAU	NM_029749|Usp42|76800|ubiquitin specific peptidase 42
mm9_v1_chr11_+_97223851_97223864	3.4184	GCAGCAU	AF424814|Socs7|192157|suppressor of cytokine signaling 7	NM_138657|Socs7|192157|suppressor of cytokine signaling 7
mm9_v1_chr4_+_24900565_24900565	3.3613	GCAGCAU	AK036257|Gpr63|81006|G protein-coupled receptor 63	NM_030733|Gpr63|81006|G protein-coupled receptor 63
mm9_v1_chr11_-_70847078_70847118	3.32276	GCAGCAU	NM_134022|6330403K07Rik|103712|RIKEN cDNA 6330403K07 gene
mm9_v1_chr8_+_48618988_48619067	3.30765	GCAGCAU	NM_203507|Rwdd4a|192174|RWD domain containing 4A	AK005797|Rwdd4a|192174|RWD domain containing 4A	AK016505|Rwdd4a|192174|RWD domain containing 4A	AK004597|Rwdd4a|192174|RWD domain containing 4A	BC016198|Rwdd4a|192174|RWD domain containing 4A
mm9_v1_chr16_+_36935029_36935139	3.29314	GCAGCAU	NM_008225|Hcls1|15163|hematopoietic cell specific Lyn substrate 1	AK040049|Hcls1|15163|hematopoietic cell specific Lyn substrate 1	AK088723|Hcls1|15163|hematopoietic cell specific Lyn substrate 1	BC007469|Hcls1|15163|hematopoietic cell specific Lyn substrate 1	X84797|Hcls1|15163|hematopoietic cell specific Lyn substrate 1	D42120|Hcls1|15163|hematopoietic cell specific Lyn substrate 1
mm9_v1_chr1_+_65233222_65233323	3.29308	GCAGCAU	AK139116|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	NM_011086|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AK165350|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AK080527|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AF102777|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AK143565|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AK173077|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing
mm9_v1_chr3_-_107434441_107434654	3.29186	GCAGCAU	AK194900|Fam40a|229707|family with sequence similarity 40, member A	BC023952|Fam40a|229707|family with sequence similarity 40, member A	AK032065|Fam40a|229707|family with sequence similarity 40, member A	AK032642|Fam40a|229707|family with sequence similarity 40, member A	AK035833|Fam40a|229707|family with sequence similarity 40, member A	AK148011|Fam40a|229707|family with sequence similarity 40, member A	AK169644|Fam40a|229707|family with sequence similarity 40, member A	NM_153563|Fam40a|229707|family with sequence similarity 40, member A
mm9_v1_chr15_-_81702298_81702350	3.23576	GCAGCAU	AK163247|Phf5a|68479|PHD finger protein 5A	AK143590|Phf5a|68479|PHD finger protein 5A	NM_026737|Phf5a|68479|PHD finger protein 5A	AK167955|Phf5a|68479|PHD finger protein 5A	BC025161|Phf5a|68479|PHD finger protein 5A	AK003520|Phf5a|68479|PHD finger protein 5A	AF479288|Phf5a|68479|PHD finger protein 5A	AK167932|Phf5a|68479|PHD finger protein 5A
mm9_v1_chr11_+_87405628_87405720	3.22826	GCAGCAU	AF262986|Mtmr4|170749|myotubularin related protein 4	NM_133215|Mtmr4|170749|myotubularin related protein 4	BC058091|Mtmr4|170749|myotubularin related protein 4	BC058364|Mtmr4|170749|myotubularin related protein 4
mm9_v1_chr13_-_111070392_111070417	3.1873	GCAGCAU	AK014050|Rab3c|67295|RAB3C, member RAS oncogene family	NM_023852|Rab3c|67295|RAB3C, member RAS oncogene family
mm9_v1_chr13_-_41582649_41582707	3.15637	GCAGCAU	BC053713|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AK083374|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AK030985|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AF009366|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	NM_001111324|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9
mm9_v1_chr14_-_34260323_34260352	3.13643	GCAGCAU	AK139498|Mapk8|26419|mitogen-activated protein kinase 8	AK032486|Mapk8|26419|mitogen-activated protein kinase 8	AK043102|Mapk8|26419|mitogen-activated protein kinase 8	AK085745|Mapk8|26419|mitogen-activated protein kinase 8	AK030767|Mapk8|26419|mitogen-activated protein kinase 8	NM_016700|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr5_-_124875921_124875965	3.12131	GCAGCAU	NM_001081203|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK077133|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK165852|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)
mm9_v1_chr6_-_120443824_120443824	3.12042	GCAGCAU	AF277399|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	BC137862|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	NM_033567|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)
mm9_v1_chr6_-_51419881_51419892	3.09883	GCAGCAU	AK049771|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	AK137214|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	NM_016806|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	NM_182650|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr7_+_116154373_116154494	3.06376	GCAGCAU	AK165720|Tub|22141|tubby candidate gene	NM_021885|Tub|22141|tubby candidate gene	U52433|Tub|22141|tubby candidate gene	BC096554|Tub|22141|tubby candidate gene	U54643|Tub|22141|tubby candidate gene
mm9_v1_chr10_+_82448214_82448242	3.05624	GCAGCAU	NM_021439|Chst11|58250|carbohydrate sulfotransferase 11	AJ289133|Chst11|58250|carbohydrate sulfotransferase 11
mm9_v1_chr11_-_51670897_51671154	3.03836	GCAGCAU	AK147453|Phf15|76901|PHD finger protein 15	AK129097|Phf15|76901|PHD finger protein 15	NM_199299|Phf15|76901|PHD finger protein 15	AK004823|Phf15|76901|PHD finger protein 15
mm9_v1_chr5_+_106305563_106305620	3.03762	GCAGCAU	AK017693|Zfp326|54367|zinc finger protein 326	AK032801|Zfp326|54367|zinc finger protein 326	BC039041|Zfp326|54367|zinc finger protein 326	NM_018759|Zfp326|54367|zinc finger protein 326	BC005567|Zfp326|54367|zinc finger protein 326	BC037055|Zfp326|54367|zinc finger protein 326	AK146438|Zfp326|54367|zinc finger protein 326	AB012725|Zfp326|54367|zinc finger protein 326
mm9_v1_chr4_+_21774729_21774865	2.99905	GCAGCAU	NM_025669|Sfrs18|66625|serine/arginine-rich splicing factor 18	BC141031|Sfrs18|66625|serine/arginine-rich splicing factor 18
mm9_v1_chr12_-_101963226_101963268	2.99768	GCAGCAU	AY341873|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	AY341881|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	BC035298|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	NM_153587|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5
mm9_v1_chr7_+_56214442_56214485	2.96999	GCAGCAU	AK019901|Nav2|78286|neuron navigator 2	NM_001111016|Nav2|78286|neuron navigator 2	AK084063|Nav2|78286|neuron navigator 2	AK162444|Nav2|78286|neuron navigator 2
mm9_v1_chr6_+_122770201_122770233	2.95678	GCAGCAU	AF253052|Foxj2|60611|forkhead box J2	NM_021899|Foxj2|60611|forkhead box J2	BC038069|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr5_-_92511942_92511942	2.87423	GCAGCAU	AK149427|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080797|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr9_+_64233432_64233531	2.87168	GCAGCAU	NM_001134399|Megf11|214058|multiple EGF-like-domains 11	NM_172522|Megf11|214058|multiple EGF-like-domains 11	AK048840|Megf11|214058|multiple EGF-like-domains 11	AK122555|Megf11|214058|multiple EGF-like-domains 11	AK051642|Megf11|214058|multiple EGF-like-domains 11	BC151157|Megf11|214058|multiple EGF-like-domains 11	BC172024|Megf11|214058|multiple EGF-like-domains 11
mm9_v1_chr15_-_98701613_98701613	2.85302	GCAGCAU	NM_001033276|Mll2|381022|myeloid/lymphoid or mixed-lineage leukemia 2
mm9_v1_chr15_+_76181718_76181819	2.82502	GCAGCAU	NM_001164607|Maf1|68877|MAF1 homolog (S. cerevisiae)	NM_001164608|Maf1|68877|MAF1 homolog (S. cerevisiae)	NM_026859|Maf1|68877|MAF1 homolog (S. cerevisiae)	BC016260|Maf1|68877|MAF1 homolog (S. cerevisiae)	AK154047|Maf1|68877|MAF1 homolog (S. cerevisiae)	AK042913|Maf1|68877|MAF1 homolog (S. cerevisiae)
mm9_v1_chr7_-_19895354_19895395	2.81738	GCAGCAU	NM_008036|Fosb|14282|FBJ osteosarcoma oncogene B
mm9_v1_chr15_+_80541675_80541764	2.80583	GCAGCAU	AK048628|Tnrc6b|213988|trinucleotide repeat containing 6b	NM_144812|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr9_+_95459990_95460369	2.76712	GCAGCAU	AY424298|Paqr9|75552|progestin and adipoQ receptor family member IX	NM_198414|Paqr9|75552|progestin and adipoQ receptor family member IX	AK133021|Paqr9|75552|progestin and adipoQ receptor family member IX
mm9_v1_chr1_-_34899878_34899900	2.76351	GCAGCAU	AK220453|Fam168b|214469|family with sequence similarity 168, member B	NM_001160235|Fam168b|214469|family with sequence similarity 168, member B	NM_001160236|Fam168b|214469|family with sequence similarity 168, member B	NM_174997|Fam168b|214469|family with sequence similarity 168, member B
mm9_v1_chr14_+_28435613_28435695	2.75903	GCAGCAU	AK147213|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	BC056760|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	NM_177814|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	AK032385|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2
mm9_v1_chr7_-_140004777_140004878	2.75083	GCAGCAU	AK156629|Fam53b|77938|family with sequence similarity 53, member B	AK051299|Fam53b|77938|family with sequence similarity 53, member B	NM_212473|Fam53b|77938|family with sequence similarity 53, member B
mm9_v1_chr3_-_19062922_19063101	2.73586	GCAGCAU	AK208595|Armc1|74252|armadillo repeat containing 1	AK213606|Armc1|74252|armadillo repeat containing 1	AK144184|Armc1|74252|armadillo repeat containing 1	AK079299|Armc1|74252|armadillo repeat containing 1	AK167233|Armc1|74252|armadillo repeat containing 1	BC051067|Armc1|74252|armadillo repeat containing 1	BC021451|Armc1|74252|armadillo repeat containing 1	NM_028840|Armc1|74252|armadillo repeat containing 1	AK009402|Armc1|74252|armadillo repeat containing 1	AK082783|Armc1|74252|armadillo repeat containing 1	AK145993|Armc1|74252|armadillo repeat containing 1
mm9_v1_chr2_+_127073631_127073743	2.68471	GCAGCAU	AK165880|Tmem127|69470|transmembrane protein 127	AK030324|Tmem127|69470|transmembrane protein 127	BC049832|Tmem127|69470|transmembrane protein 127	NM_175145|Tmem127|69470|transmembrane protein 127	AK050216|Tmem127|69470|transmembrane protein 127
mm9_v1_chr5_+_73872293_73872293	2.67682	GCAGCAU	AK076991|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_001190734|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr5_+_147196560_147196581	2.62275	GCAGCAU	AK044481|Wasf3|245880|WAS protein family, member 3	BC027038|Wasf3|245880|WAS protein family, member 3	NM_145155|Wasf3|245880|WAS protein family, member 3
mm9_v1_chr2_+_153117135_153117203	2.60595	GCAGCAU	NM_008444|Kif3b|16569|kinesin family member 3B	AK147467|Kif3b|16569|kinesin family member 3B	AK083700|Kif3b|16569|kinesin family member 3B	AK148200|Kif3b|16569|kinesin family member 3B	BC065132|Kif3b|16569|kinesin family member 3B	AK122258|Kif3b|16569|kinesin family member 3B	AK081541|Kif3b|16569|kinesin family member 3B
mm9_v1_chr5_+_28643698_28643741	2.6058	GCAGCAU	NM_028234|Rbm33|381626|RNA binding motif protein 33	AK014289|Rbm33|381626|RNA binding motif protein 33
mm9_v1_chrX_+_139952975_139953253	2.59022	GCAGCAU	AK158893|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195048|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AK031853|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr7_-_139978601_139978617	2.57147	GCAGCAU	BC035523|Fam53b|77938|family with sequence similarity 53, member B	AK020830|Fam53b|77938|family with sequence similarity 53, member B	NM_175268|Fam53b|77938|family with sequence similarity 53, member B
mm9_v1_chr3_-_75360676_75360744	2.55043	GCAGCAU	AF159368|Pdcd10|56426|programmed cell death 10	AK149182|Pdcd10|56426|programmed cell death 10	BC086778|Pdcd10|56426|programmed cell death 10	AK005594|Pdcd10|56426|programmed cell death 10	AK168857|Pdcd10|56426|programmed cell death 10	AK169689|Pdcd10|56426|programmed cell death 10	BC019650|Pdcd10|56426|programmed cell death 10	AK075926|Pdcd10|56426|programmed cell death 10	NM_019745|Pdcd10|56426|programmed cell death 10	AK160234|Pdcd10|56426|programmed cell death 10	AK137198|Pdcd10|56426|programmed cell death 10
mm9_v1_chr7_-_130513339_130513430	2.49658	GCAGCAU	AK036468|Arhgap17|70497|Rho GTPase activating protein 17	AK036617|Arhgap17|70497|Rho GTPase activating protein 17	AK152266|Arhgap17|70497|Rho GTPase activating protein 17	AK152301|Arhgap17|70497|Rho GTPase activating protein 17	AK149986|Arhgap17|70497|Rho GTPase activating protein 17	AK147010|Arhgap17|70497|Rho GTPase activating protein 17	AK046411|Arhgap17|70497|Rho GTPase activating protein 17	AK161636|Arhgap17|70497|Rho GTPase activating protein 17	NM_001122640|Arhgap17|70497|Rho GTPase activating protein 17	NM_001122641|Arhgap17|70497|Rho GTPase activating protein 17	NM_001122642|Arhgap17|70497|Rho GTPase activating protein 17	NM_001122643|Arhgap17|70497|Rho GTPase activating protein 17	NM_144529|Arhgap17|70497|Rho GTPase activating protein 17
mm9_v1_chr1_-_134638361_134638397	2.48287	GCAGCAU	AK052440|Nfasc|269116|neurofascin	NM_001160317|Nfasc|269116|neurofascin	NM_182716|Nfasc|269116|neurofascin
mm9_v1_chr4_-_150418704_150418793	2.48275	GCAGCAU	NM_011067|Per3|18628|period homolog 3 (Drosophila)	AK166514|Per3|18628|period homolog 3 (Drosophila)
mm9_v1_chr10_-_121484248_121484370	2.47725	GCAGCAU	NM_001081037|Srgap1|117600|SLIT-ROBO Rho GTPase activating protein 1	BC120892|Srgap1|117600|SLIT-ROBO Rho GTPase activating protein 1	BC120893|Srgap1|117600|SLIT-ROBO Rho GTPase activating protein 1	AK138257|Srgap1|117600|SLIT-ROBO Rho GTPase activating protein 1
mm9_v1_chr6_-_126595818_126595818	2.45624	GCAGCAU	NM_010595|Kcna1|16485|potassium voltage-gated channel, shaker-related subfamily, member 1
mm9_v1_chr5_-_38550627_38550759	2.45103	GCAGCAU	AF035683|Nsg1|18196|neuron specific gene family member 1	AK144503|Nsg1|18196|neuron specific gene family member 1	BC008272|Nsg1|18196|neuron specific gene family member 1	AK078054|Nsg1|18196|neuron specific gene family member 1	AK148941|Nsg1|18196|neuron specific gene family member 1	AX775765|Nsg1|18196|neuron specific gene family member 1	NM_010942|Nsg1|18196|neuron specific gene family member 1
mm9_v1_chr11_-_97011025_97011025	2.41791	GCAGCAU	BC057590|Tbkbp1|73174|TBK1 binding protein 1	NM_198100|Tbkbp1|73174|TBK1 binding protein 1
mm9_v1_chr5_+_117583596_117583674	2.40307	GCAGCAU	AK155208|Taok3|330177|TAO kinase 3	NM_001081308|Taok3|330177|TAO kinase 3	AK171353|Taok3|330177|TAO kinase 3	AK037817|Taok3|330177|TAO kinase 3	AK042181|Taok3|330177|TAO kinase 3
mm9_v1_chr15_-_36212893_36212934	2.38705	GCAGCAU	NM_013923|Rnf19a|30945|ring finger protein 19A
mm9_v1_chr7_+_130114059_130114440	2.36665	GCAGCAU	NM_011247|Rbbp6|19647|retinoblastoma binding protein 6	NM_175023|Rbbp6|19647|retinoblastoma binding protein 6	AK081261|Rbbp6|19647|retinoblastoma binding protein 6	AK045635|Rbbp6|19647|retinoblastoma binding protein 6	BC025874|Rbbp6|19647|retinoblastoma binding protein 6
mm9_v1_chr12_-_12948513_12948641	2.36479	GCAGCAU	BC005453|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	AK144126|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	AK146913|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	AK146696|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	NM_008709|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
mm9_v1_chr9_+_109834266_109834307	2.35383	GCAGCAU	NM_008633|Mtap4|17758|microtubule-associated protein 4	AK046825|Mtap4|17758|microtubule-associated protein 4
mm9_v1_chr15_+_80629020_80629144	2.3504	GCAGCAU	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr11_-_88579517_88579542	2.34384	GCAGCAU	AK156439|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049637|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049688|Msi2|76626|Musashi homolog 2 (Drosophila)	NM_054043|Msi2|76626|Musashi homolog 2 (Drosophila)
mm9_v1_chr7_+_133966816_133966816	2.34002	GCAGCAU	AK131642|Fam57b|68952|family with sequence similarity 57, member B	NM_029978|Fam57b|68952|family with sequence similarity 57, member B
mm9_v1_chrX_+_6356431_6356431	2.33161	GCAGCAU	BC075627|Dgkk|331374|diacylglycerol kinase kappa	NM_177914|Dgkk|331374|diacylglycerol kinase kappa
mm9_v1_chr7_+_133968166_133968166	2.31979	GCAGCAU	BC055444|Fam57b|68952|family with sequence similarity 57, member B	NM_001146347|Fam57b|68952|family with sequence similarity 57, member B
mm9_v1_chr19_+_40905768_40905801	2.31557	GCAGCAU	AK052506|Ccnj|240665|cyclin J	NM_172839|Ccnj|240665|cyclin J	AK157841|Ccnj|240665|cyclin J	BC120921|Ccnj|240665|cyclin J	BC120922|Ccnj|240665|cyclin J	BC117559|Ccnj|240665|cyclin J
mm9_v1_chr11_-_59104252_59104253	2.3083	GCAGCAU	NM_009522|Wnt3a|22416|wingless-related MMTV integration site 3A	X56842|Wnt3a|22416|wingless-related MMTV integration site 3A
mm9_v1_chrX_+_157205944_157206093	2.2933	GCAGCAU	BC046422|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)	NM_011302|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)	AF084561|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)	AF073780|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)	AJ011381|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)
mm9_v1_chr2_-_152777135_152777317	2.29254	GCAGCAU	BC116841|Dusp15|252864|dual specificity phosphatase-like 15	BC116843|Dusp15|252864|dual specificity phosphatase-like 15	BC144711|Dusp15|252864|dual specificity phosphatase-like 15	AF357887|Dusp15|252864|dual specificity phosphatase-like 15	NM_145744|Dusp15|252864|dual specificity phosphatase-like 15	NM_001159376|Dusp15|252864|dual specificity phosphatase-like 15
mm9_v1_chr19_+_45438212_45438344	2.28292	GCAGCAU	NM_001037758|Btrc|12234|beta-transducin repeat containing protein	NM_009771|Btrc|12234|beta-transducin repeat containing protein	AK220183|Btrc|12234|beta-transducin repeat containing protein	AK145624|Btrc|12234|beta-transducin repeat containing protein	AK052317|Btrc|12234|beta-transducin repeat containing protein	AK083257|Btrc|12234|beta-transducin repeat containing protein	AF081887|Btrc|12234|beta-transducin repeat containing protein	AK032221|Btrc|12234|beta-transducin repeat containing protein	AK145091|Btrc|12234|beta-transducin repeat containing protein	BC052879|Btrc|12234|beta-transducin repeat containing protein	BC003989|Btrc|12234|beta-transducin repeat containing protein	AF099932|Btrc|12234|beta-transducin repeat containing protein	AF110396|Btrc|12234|beta-transducin repeat containing protein	AF112979|Btrc|12234|beta-transducin repeat containing protein	AK180045|Btrc|12234|beta-transducin repeat containing protein	AK188552|Btrc|12234|beta-transducin repeat containing protein	AK189588|Btrc|12234|beta-transducin repeat containing protein
mm9_v1_chr10_-_6373388_6373465	2.26928	GCAGCAU	AK075931|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK160025|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK036284|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK028211|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK038579|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	NM_001170785|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	NM_001170786|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	NM_172308|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
mm9_v1_chr11_-_113545329_113545497	2.26493	GCAGCAU	AK009763|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK159228|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK159659|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK017659|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK087540|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK028386|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	NM_138598|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed
mm9_v1_chr8_-_61390372_61390423	2.24552	GCAGCAU	BC111102|Galntl6|270049|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6	AK080614|Galntl6|270049|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6	NM_175032|Galntl6|270049|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
mm9_v1_chrX_+_100551808_100551914	2.17908	GCAGCAU	NM_009767|Chic1|12212|cysteine-rich hydrophobic domain 1	AK034427|Chic1|12212|cysteine-rich hydrophobic domain 1	AK135974|Chic1|12212|cysteine-rich hydrophobic domain 1	Y11896|Chic1|12212|cysteine-rich hydrophobic domain 1	BC132322|Chic1|12212|cysteine-rich hydrophobic domain 1	BC138730|Chic1|12212|cysteine-rich hydrophobic domain 1	AK013993|Chic1|12212|cysteine-rich hydrophobic domain 1
mm9_v1_chr18_+_54021746_54021814	2.07972	GCAGCAU	AK049379|Csnk1g3|70425|casein kinase 1, gamma 3	NM_152809|Csnk1g3|70425|casein kinase 1, gamma 3	AK080491|Csnk1g3|70425|casein kinase 1, gamma 3
mm9_v1_chr3_-_107261815_107261829	2.07665	GCAGCAU	BC024837|Kcnc4|99738|potassium voltage gated channel, Shaw-related subfamily, member 4	NM_145922|Kcnc4|99738|potassium voltage gated channel, Shaw-related subfamily, member 4
mm9_v1_chr3_+_138405156_138405310	2.05249	GCAGCAU	NM_019571|Tspan5|56224|tetraspanin 5	AF121344|Tspan5|56224|tetraspanin 5	AK013350|Tspan5|56224|tetraspanin 5	BC058695|Tspan5|56224|tetraspanin 5	BC046784|Tspan5|56224|tetraspanin 5
mm9_v1_chr11_-_96638811_96638880	2.04454	GCAGCAU	AK020952|Snx11|74479|sorting nexin 11	BC014719|Snx11|74479|sorting nexin 11	AK037747|Snx11|74479|sorting nexin 11	AK042409|Snx11|74479|sorting nexin 11	AK076332|Snx11|74479|sorting nexin 11	NM_001163389|Snx11|74479|sorting nexin 11	NM_028965|Snx11|74479|sorting nexin 11
mm9_v1_chrX_-_39265047_39265129	2.01674	GCAGCAU	AK140950|Thoc2|331401|THO complex 2	AK138023|Thoc2|331401|THO complex 2	NM_001033422|Thoc2|331401|THO complex 2	AK137966|Thoc2|331401|THO complex 2
mm9_v1_chr8_+_69221320_69221371	2.00601	GCAGCAU	AK132397|Npy1r|18166|neuropeptide Y receptor Y1	NM_010934|Npy1r|18166|neuropeptide Y receptor Y1	D63819|Npy1r|18166|neuropeptide Y receptor Y1
mm9_v1_chr2_+_128891655_128891754	1.95154	GCAGCAU	NM_027192|Ttl|69737|tubulin tyrosine ligase	BC024414|Ttl|69737|tubulin tyrosine ligase	AK084377|Ttl|69737|tubulin tyrosine ligase
mm9_v1_chr3_-_68930928_68931049	1.9283	GCAGCAU	BC052162|Kpna4|16649|karyopherin (importin) alpha 4	NM_008467|Kpna4|16649|karyopherin (importin) alpha 4	AK147920|Kpna4|16649|karyopherin (importin) alpha 4
mm9_v1_chr17_+_3114963_3115105	1.91414	GCAGCAU	AK157957|Scaf8|106583|SR-related CTD-associated factor 8	AK042381|Scaf8|106583|SR-related CTD-associated factor 8	NM_134123|Scaf8|106583|SR-related CTD-associated factor 8	BC075621|Scaf8|106583|SR-related CTD-associated factor 8	AK122451|Scaf8|106583|SR-related CTD-associated factor 8
mm9_v1_chr2_+_112219335_112219462	1.91313	GCAGCAU	AK036861|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	NM_024254|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK168639|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK049599|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK151464|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK010654|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK152570|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC003216|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC012402|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC080661|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK162183|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene
mm9_v1_chr5_-_3803095_3803144	1.90196	GCAGCAU	NM_001003909|Ankib1|70797|ankyrin repeat and IBR domain containing 1	AK014523|Ankib1|70797|ankyrin repeat and IBR domain containing 1
mm9_v1_chr4_-_126145660_126145664	1.87699	GCAGCAU	BC129915|Eif2c1|236511|eukaryotic translation initiation factor 2C, 1	AB081471|Eif2c1|236511|eukaryotic translation initiation factor 2C, 1	BC129914|Eif2c1|236511|eukaryotic translation initiation factor 2C, 1	NM_153403|Eif2c1|236511|eukaryotic translation initiation factor 2C, 1
mm9_v1_chr1_+_82836029_82836087	1.87102	GCAGCAU	AK048326|Agfg1|15463|ArfGAP with FG repeats 1	NM_010472|Agfg1|15463|ArfGAP with FG repeats 1	AK049400|Agfg1|15463|ArfGAP with FG repeats 1	BC031154|Agfg1|15463|ArfGAP with FG repeats 1
mm9_v1_chrX_-_48559008_48559019	1.8494	GCAGCAU	AK040522|Mbnl3|171170|muscleblind-like 3 (Drosophila)	NM_134163|Mbnl3|171170|muscleblind-like 3 (Drosophila)	AK088971|Mbnl3|171170|muscleblind-like 3 (Drosophila)
mm9_v1_chr12_+_111976121_111976196	1.84258	GCAGCAU	NM_027149|Wdr20a|69641|WD repeat domain 20A
mm9_v1_chr17_+_31194623_31194718	1.83334	GCAGCAU	NM_009593|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	AF323659|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	Z48745|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	U34920|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	BC119471|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	AK037433|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1
mm9_v1_chr8_+_97296066_97296079	1.8199	GCAGCAU	NM_009142|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1
mm9_v1_chr7_+_133960398_133960398	1.80706	GCAGCAU	NM_026884|Fam57b|68952|family with sequence similarity 57, member B
mm9_v1_chr8_+_24168730_24168785	1.79688	GCAGCAU	AK147483|Ank1|11733|ankyrin 1, erythroid	NM_031158|Ank1|11733|ankyrin 1, erythroid	X69063|Ank1|11733|ankyrin 1, erythroid	AK147597|Ank1|11733|ankyrin 1, erythroid
mm9_v1_chrX_+_140100287_140100287	1.79564	GCAGCAU	NM_001195049|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	U39738|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr9_-_44607274_44607334	1.79107	GCAGCAU	AK090375|Tmem25|71687|transmembrane protein 25	AK165827|Tmem25|71687|transmembrane protein 25	AK002841|Tmem25|71687|transmembrane protein 25	NM_027865|Tmem25|71687|transmembrane protein 25	BC060057|Tmem25|71687|transmembrane protein 25	BC060243|Tmem25|71687|transmembrane protein 25	AK154206|Tmem25|71687|transmembrane protein 25	AK165199|Tmem25|71687|transmembrane protein 25
mm9_v1_chr9_-_108499855_108499944	1.78199	GCAGCAU	AK016685|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	AK161992|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	AK038927|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	AK047714|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	BC111871|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	NM_028944|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	AK046783|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)
mm9_v1_chr2_-_65405546_65405588	1.78094	GCAGCAU	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr6_-_87761537_87761854	1.765	GCAGCAU	AB232640|Rab43|69834|RAB43, member RAS oncogene family	AJ534465|Rab43|69834|RAB43, member RAS oncogene family	AK010874|Rab43|69834|RAB43, member RAS oncogene family	AK158283|Rab43|69834|RAB43, member RAS oncogene family	NM_001039394|Rab43|69834|RAB43, member RAS oncogene family
mm9_v1_chr5_+_34185760_34185844	1.75178	GCAGCAU	NM_001081102|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_001177884|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_175231|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	BC079668|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)
mm9_v1_chr14_+_49065971_49066097	1.73682	GCAGCAU	AK141246|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	NM_172600|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK032809|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK054494|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK040456|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK153648|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK038175|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene
mm9_v1_chr2_+_31101302_31101442	1.67476	GCAGCAU	BC059825|Ncs1|14299|neuronal calcium sensor 1	NM_019681|Ncs1|14299|neuronal calcium sensor 1
mm9_v1_chr4_+_155265932_155266005	1.66955	GCAGCAU	AK147505|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	BC067016|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	NM_207223|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm9_v1_chr11_+_76759157_76759353	1.66275	GCAGCAU	NM_178645|Blmh|104184|bleomycin hydrolase	AK029274|Blmh|104184|bleomycin hydrolase	AK049461|Blmh|104184|bleomycin hydrolase	AK051441|Blmh|104184|bleomycin hydrolase	AK150438|Blmh|104184|bleomycin hydrolase	BC027403|Blmh|104184|bleomycin hydrolase	AK040799|Blmh|104184|bleomycin hydrolase	BC027362|Blmh|104184|bleomycin hydrolase	BC024090|Blmh|104184|bleomycin hydrolase	AK053872|Blmh|104184|bleomycin hydrolase	AK150896|Blmh|104184|bleomycin hydrolase	AK167325|Blmh|104184|bleomycin hydrolase	AK035228|Blmh|104184|bleomycin hydrolase	BC027037|Blmh|104184|bleomycin hydrolase	AK197894|Blmh|104184|bleomycin hydrolase	AK199579|Blmh|104184|bleomycin hydrolase
mm9_v1_chr4_+_13711928_13711928	1.65824	GCAGCAU	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr7_-_120532071_120532086	1.65018	GCAGCAU	BC099456|Pth|19226|parathyroid hormone	AK138677|Pth|19226|parathyroid hormone	NM_020623|Pth|19226|parathyroid hormone
mm9_v1_chr11_+_79806552_79806633	1.64037	GCAGCAU	AK141264|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	BC064461|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	NM_001163018|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	NM_199196|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)
mm9_v1_chr19_-_60019520_60019556	1.6258	GCAGCAU	AK015534|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)	NM_001164367|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)
mm9_v1_chr7_-_35174519_35174695	1.62539	GCAGCAU	BC031521|Lsm14a|67070|LSM14 homolog A (SCD6, S. cerevisiae)	NM_025948|Lsm14a|67070|LSM14 homolog A (SCD6, S. cerevisiae)
mm9_v1_chr9_+_43552516_43552726	1.61493	GCAGCAU	BC060694|Pvrl1|58235|poliovirus receptor-related 1	NM_021424|Pvrl1|58235|poliovirus receptor-related 1	AF297665|Pvrl1|58235|poliovirus receptor-related 1	AF239762|Pvrl1|58235|poliovirus receptor-related 1	AF270977|Pvrl1|58235|poliovirus receptor-related 1
mm9_v1_chr19_+_47142217_47142252	1.60338	GCAGCAU	AK031985|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK088953|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_177342|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK169453|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr10_+_57351786_57351901	1.59352	GCAGCAU	L02241|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039051|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_008863|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK005281|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK089677|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK083875|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK156851|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK157521|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK171359|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK156950|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific
mm9_v1_chr5_+_151755181_151755278	1.58091	GCAGCAU	BC138258|Kl|16591|klotho	BC138259|Kl|16591|klotho	NM_013823|Kl|16591|klotho	AB005141|Kl|16591|klotho	AB010088|Kl|16591|klotho
mm9_v1_chr6_-_67485802_67485823	1.53705	GCAGCAU	NM_020047|Tacstd2|56753|tumor-associated calcium signal transducer 2
mm9_v1_chr2_+_4322020_4322021	1.53034	GCAGCAU	BC082808|Frmd4a|209630|FERM domain containing 4A	NM_001177843|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr18_+_22503589_22503589	1.5037	GCAGCAU	AK082659|Asxl3|211961|additional sex combs like 3 (Drosophila)	NM_001167777|Asxl3|211961|additional sex combs like 3 (Drosophila)
mm9_v1_chr12_+_60167873_60167985	1.49677	GCAGCAU	NM_008891|Pnn|18949|pinin	AK051640|Pnn|18949|pinin	AK009055|Pnn|18949|pinin	AK085295|Pnn|18949|pinin	AK050669|Pnn|18949|pinin	AK157587|Pnn|18949|pinin	AK028219|Pnn|18949|pinin	AK161109|Pnn|18949|pinin	AK160616|Pnn|18949|pinin	BC132571|Pnn|18949|pinin	BC138014|Pnn|18949|pinin	Y08701|Pnn|18949|pinin	AK030978|Pnn|18949|pinin
mm9_v1_chr8_+_84239098_84239098	1.4943	GCAGCAU	BC064813|Inpp4b|234515|inositol polyphosphate-4-phosphatase, type II	NM_001024617|Inpp4b|234515|inositol polyphosphate-4-phosphatase, type II
mm9_v1_chr5_-_92512486_92512611	1.49027	GCAGCAU	AK153893|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK153221|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151732|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080794|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080796|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC119806|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC122883|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr11_-_21901563_21901712	1.47956	GCAGCAU	BC057105|Otx1|18423|orthodenticle homolog 1 (Drosophila)	AK083671|Otx1|18423|orthodenticle homolog 1 (Drosophila)	AK050758|Otx1|18423|orthodenticle homolog 1 (Drosophila)	AK083434|Otx1|18423|orthodenticle homolog 1 (Drosophila)	AK042975|Otx1|18423|orthodenticle homolog 1 (Drosophila)	AK158588|Otx1|18423|orthodenticle homolog 1 (Drosophila)	NM_011023|Otx1|18423|orthodenticle homolog 1 (Drosophila)	AK049430|Otx1|18423|orthodenticle homolog 1 (Drosophila)
mm9_v1_chr16_-_3976544_3976631	1.46716	GCAGCAU	AK084199|Nlrc3|268857|NLR family, CARD domain containing 3	AK079766|Nlrc3|268857|NLR family, CARD domain containing 3	AK171971|Nlrc3|268857|NLR family, CARD domain containing 3	NM_001081280|Nlrc3|268857|NLR family, CARD domain containing 3
mm9_v1_chr7_-_20189709_20189838	1.43555	GCAGCAU	AF042799|Clasrp|53609|CLK4-associating serine/arginine rich protein	AK009334|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC010728|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC079543|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC103781|Clasrp|53609|CLK4-associating serine/arginine rich protein	AK159443|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC106129|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC060092|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC051916|Clasrp|53609|CLK4-associating serine/arginine rich protein	NM_016680|Clasrp|53609|CLK4-associating serine/arginine rich protein
mm9_v1_chr7_+_87414540_87414576	1.43448	GCAGCAU	AK032076|Vps33b|233405|vacuolar protein sorting 33B (yeast)	NM_178070|Vps33b|233405|vacuolar protein sorting 33B (yeast)	BC011059|Vps33b|233405|vacuolar protein sorting 33B (yeast)
mm9_v1_chr9_+_37296867_37296905	1.42841	GCAGCAU	BC066002|BC024479|235184|cDNA sequence BC024479	NM_146222|BC024479|235184|cDNA sequence BC024479
mm9_v1_chrX_-_161764912_161765057	1.42831	GCAGCAU	BC056342|Glra2|237213|glycine receptor, alpha 2 subunit	BC068987|Glra2|237213|glycine receptor, alpha 2 subunit	NM_183427|Glra2|237213|glycine receptor, alpha 2 subunit	AK135134|Glra2|237213|glycine receptor, alpha 2 subunit
mm9_v1_chr3_+_89577436_89577810	1.42818	GCAGCAU	NM_027315|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AY112699|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AY945937|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AK146707|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr1_-_13364092_13364163	1.42804	GCAGCAU	AF000582|Ncoa2|17978|nuclear receptor coactivator 2	AK048972|Ncoa2|17978|nuclear receptor coactivator 2	AK087443|Ncoa2|17978|nuclear receptor coactivator 2	U39060|Ncoa2|17978|nuclear receptor coactivator 2	AK052117|Ncoa2|17978|nuclear receptor coactivator 2	NM_001077695|Ncoa2|17978|nuclear receptor coactivator 2	NM_008678|Ncoa2|17978|nuclear receptor coactivator 2
mm9_v1_chr15_+_40486577_40486623	1.42187	GCAGCAU	AK046521|Zfpm2|22762|zinc finger protein, multitype 2	NM_011766|Zfpm2|22762|zinc finger protein, multitype 2	AF125166|Zfpm2|22762|zinc finger protein, multitype 2
mm9_v1_chr18_-_20273110_20273273	1.41583	GCAGCAU	BC109161|Dsc1|13505|desmocollin 1	BC109162|Dsc1|13505|desmocollin 1	AK036893|Dsc1|13505|desmocollin 1	AK081826|Dsc1|13505|desmocollin 1	X97986|Dsc1|13505|desmocollin 1	AK079441|Dsc1|13505|desmocollin 1	NM_013504|Dsc1|13505|desmocollin 1
mm9_v1_chr1_-_136131981_136132033	1.4071	GCAGCAU	NM_001008533|Adora1|11539|adenosine A1 receptor	AK038774|Adora1|11539|adenosine A1 receptor	NM_001039510|Adora1|11539|adenosine A1 receptor	AK134532|Adora1|11539|adenosine A1 receptor
mm9_v1_chr7_+_58877199_58877199	1.39759	GCAGCAU	NM_080853|Slc17a6|140919|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6
mm9_v1_chr10_+_57370786_57370799	1.38513	GCAGCAU	BC052351|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039050|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001190402|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	BC087894|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific
mm9_v1_chr11_+_72503487_72503520	1.38271	GCAGCAU	BC139231|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	BC145583|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	NM_009671|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB011370|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB098329|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AK134008|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1
mm9_v1_chr14_-_21613162_21613325	1.37593	GCAGCAU	AF395884|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK154764|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC025597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK078311|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC019162|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK081969|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK031213|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK054406|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039138|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039139|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_178597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma
mm9_v1_chr3_+_103718042_103718073	1.34882	GCAGCAU	AB101658|Rsbn1|229675|rosbin, round spermatid basic protein 1	NM_172684|Rsbn1|229675|rosbin, round spermatid basic protein 1	BC139213|Rsbn1|229675|rosbin, round spermatid basic protein 1	BC139215|Rsbn1|229675|rosbin, round spermatid basic protein 1
mm9_v1_chr19_-_44144175_44144240	1.34055	GCAGCAU	NM_145502|Erlin1|226144|ER lipid raft associated 1	BC021793|Erlin1|226144|ER lipid raft associated 1	BC011220|Erlin1|226144|ER lipid raft associated 1
mm9_v1_chr8_-_26864721_26864754	1.30326	GCAGCAU	AK008529|Ddhd2|72108|DDHD domain containing 2	AK196094|Ddhd2|72108|DDHD domain containing 2	NM_028102|Ddhd2|72108|DDHD domain containing 2	AK039979|Ddhd2|72108|DDHD domain containing 2
mm9_v1_chr2_+_109514856_109514856	1.29458	GCAGCAU	AY057908|Bdnf|12064|brain derived neurotrophic factor	EF125669|Bdnf|12064|brain derived neurotrophic factor	NM_007540|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr9_+_91263809_91263809	1.27658	GCAGCAU	AK046913|Zic4|22774|zinc finger protein of the cerebellum 4	NM_009576|Zic4|22774|zinc finger protein of the cerebellum 4
mm9_v1_chr12_-_76697166_76697196	1.25683	GCAGCAU	BC094387|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	AK220163|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	BC085149|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	NM_012024|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform
mm9_v1_chr10_+_57365674_57365674	1.25567	GCAGCAU	BC061162|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039052|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039053|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific
mm9_v1_chr11_+_53164267_53164268	1.24535	GCAGCAU	NM_033565|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr15_+_81575277_81575277	1.21834	GCAGCAU	NM_001081016|Zc3h7b|20286|zinc finger CCCH type containing 7B
mm9_v1_chr1_-_36502079_36502124	1.19664	GCAGCAU	AK142024|Lman2l|214895|lectin, mannose-binding 2-like	BC046969|Lman2l|214895|lectin, mannose-binding 2-like	NM_001013374|Lman2l|214895|lectin, mannose-binding 2-like	BC027226|Lman2l|214895|lectin, mannose-binding 2-like	AK158015|Lman2l|214895|lectin, mannose-binding 2-like
mm9_v1_chrX_+_72759635_72759692	1.15546	GCAGCAU	NM_011692|Vbp1|22327|von Hippel-Lindau binding protein 1	AK167742|Vbp1|22327|von Hippel-Lindau binding protein 1	AK077923|Vbp1|22327|von Hippel-Lindau binding protein 1	AK002282|Vbp1|22327|von Hippel-Lindau binding protein 1	AK008847|Vbp1|22327|von Hippel-Lindau binding protein 1	AK051431|Vbp1|22327|von Hippel-Lindau binding protein 1	AK151527|Vbp1|22327|von Hippel-Lindau binding protein 1	AK159284|Vbp1|22327|von Hippel-Lindau binding protein 1	AK167064|Vbp1|22327|von Hippel-Lindau binding protein 1	AK169185|Vbp1|22327|von Hippel-Lindau binding protein 1	AK153069|Vbp1|22327|von Hippel-Lindau binding protein 1	U96760|Vbp1|22327|von Hippel-Lindau binding protein 1	BC132169|Vbp1|22327|von Hippel-Lindau binding protein 1	BC132171|Vbp1|22327|von Hippel-Lindau binding protein 1
mm9_v1_chr14_+_14845004_14845173	1.14459	GCAGCAU	AK046679|Atxn7|246103|ataxin 7	NM_139227|Atxn7|246103|ataxin 7	BC137846|Atxn7|246103|ataxin 7
mm9_v1_chr8_-_17535279_17535384	1.11769	GCAGCAU	AY017475|Csmd1|94109|CUB and Sushi multiple domains 1	AK038679|Csmd1|94109|CUB and Sushi multiple domains 1	AK048698|Csmd1|94109|CUB and Sushi multiple domains 1	AK134585|Csmd1|94109|CUB and Sushi multiple domains 1	NM_053171|Csmd1|94109|CUB and Sushi multiple domains 1
mm9_v1_chr11_-_99092319_99092333	1.089	GCAGCAU	BC065043|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	NM_020618|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm9_v1_chr1_+_167718811_167718898	1.05735	GCAGCAU	AK138774|Cd247|12503|CD247 antigen	J04967|Cd247|12503|CD247 antigen	NM_001113391|Cd247|12503|CD247 antigen	NM_001113392|Cd247|12503|CD247 antigen	NM_001113393|Cd247|12503|CD247 antigen	NM_001113394|Cd247|12503|CD247 antigen	NM_031162|Cd247|12503|CD247 antigen	AK017904|Cd247|12503|CD247 antigen	AK088087|Cd247|12503|CD247 antigen	L03353|Cd247|12503|CD247 antigen	S51932|Cd247|12503|CD247 antigen	U56258|Cd247|12503|CD247 antigen	X84237|Cd247|12503|CD247 antigen	BC052824|Cd247|12503|CD247 antigen
mm9_v1_chr4_+_34497840_34497946	1.04272	GCAGCAU	NM_001007589|Akirin2|433693|akirin 2	BC082305|Akirin2|433693|akirin 2
mm9_v1_chr5_+_116081897_116082155	1.03047	GCAGCAU	BC056466|Rab35|77407|RAB35, member RAS oncogene family	NM_198163|Rab35|77407|RAB35, member RAS oncogene family	AK156576|Rab35|77407|RAB35, member RAS oncogene family	AB232631|Rab35|77407|RAB35, member RAS oncogene family
mm9_v1_chr9_+_31193769_31193815	1.01871	GCAGCAU	NM_172766|Nfrkb|235134|nuclear factor related to kappa B binding protein	AK041206|Nfrkb|235134|nuclear factor related to kappa B binding protein	AK043432|Nfrkb|235134|nuclear factor related to kappa B binding protein	BC060076|Nfrkb|235134|nuclear factor related to kappa B binding protein	BC033595|Nfrkb|235134|nuclear factor related to kappa B binding protein	BC059861|Nfrkb|235134|nuclear factor related to kappa B binding protein
mm9_v1_chr19_+_29064938_29065019	1.01011	GCAGCAU	AK078872|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK161465|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK018787|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK080238|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK012312|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	NM_025950|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	BC031761|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK038578|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK079556|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1
mm9_v1_chr14_-_21871647_21871707	1.0043	GCAGCAU	AF242857|Ap3m1|55946|adaptor-related protein complex 3, mu 1 subunit	NM_018829|Ap3m1|55946|adaptor-related protein complex 3, mu 1 subunit
mm9_v1_chr4_-_135543058_135543193	1.00425	GCAGCAU	BC052695|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene	AF400670|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene	AK050261|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene	NM_025411|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene	AK004208|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene
mm9_v1_chrX_-_101396356_101396482	0.996237	GCAGCAU	AK220439|C77370|245555|expressed sequence C77370	DQ975302|C77370|245555|expressed sequence C77370	DQ975303|C77370|245555|expressed sequence C77370	NM_001077354|C77370|245555|expressed sequence C77370	AK038635|C77370|245555|expressed sequence C77370
mm9_v1_chr19_-_60019266_60019313	0.994526	GCAGCAU	AK154916|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)	NM_001033172|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)
mm9_v1_chr11_+_29072836_29072998	0.994476	GCAGCAU	NM_134034|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK090014|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK041513|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK044742|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK037253|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK165940|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK166627|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK129344|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	BC006870|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)
mm9_v1_chr15_-_79572885_79572998	0.993585	GCAGCAU	BC098208|Sun2|223697|Sad1 and UNC84 domain containing 2	AK171058|Sun2|223697|Sad1 and UNC84 domain containing 2	AK046318|Sun2|223697|Sad1 and UNC84 domain containing 2	AK085196|Sun2|223697|Sad1 and UNC84 domain containing 2	AK128958|Sun2|223697|Sad1 and UNC84 domain containing 2	NM_194342|Sun2|223697|Sad1 and UNC84 domain containing 2	AK156246|Sun2|223697|Sad1 and UNC84 domain containing 2	AK172398|Sun2|223697|Sad1 and UNC84 domain containing 2
mm9_v1_chr11_+_75401554_75401692	0.990721	GCAGCAU	AK144618|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152089|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK153569|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK167760|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152874|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK165659|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168720|Pitpna|18738|phosphatidylinositol transfer protein, alpha	U96725|Pitpna|18738|phosphatidylinositol transfer protein, alpha	NM_008850|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK149745|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK151496|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168187|Pitpna|18738|phosphatidylinositol transfer protein, alpha	BC056171|Pitpna|18738|phosphatidylinositol transfer protein, alpha
mm9_v1_chr17_+_46297980_46297995	0.98981	GCAGCAU	NM_001145979|Gtpbp2|56055|GTP binding protein 2	NM_019581|Gtpbp2|56055|GTP binding protein 2
mm9_v1_chr15_+_74346624_74346672	0.980064	GCAGCAU	AK147607|Bai1|107831|brain-specific angiogenesis inhibitor 1	NM_174991|Bai1|107831|brain-specific angiogenesis inhibitor 1	AK147456|Bai1|107831|brain-specific angiogenesis inhibitor 1	AK147459|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr6_+_4697305_4697405	0.966571	GCAGCAU	NM_001040611|Peg10|170676|paternally expressed 10	NM_130877|Peg10|170676|paternally expressed 10	AB091827|Peg10|170676|paternally expressed 10	AJ006464|Peg10|170676|paternally expressed 10
mm9_v1_chr3_+_108394195_108394337	0.963138	GCAGCAU	NM_181400|Wdr47|99512|WD repeat domain 47	AK047357|Wdr47|99512|WD repeat domain 47	AK163422|Wdr47|99512|WD repeat domain 47	BC040337|Wdr47|99512|WD repeat domain 47
mm9_v1_chr13_+_55050729_55050861	0.956239	GCAGCAU	BC058084|Unc5a|107448|unc-5 homolog A (C. elegans)	AJ487852|Unc5a|107448|unc-5 homolog A (C. elegans)	NM_153131|Unc5a|107448|unc-5 homolog A (C. elegans)
mm9_v1_chr5_-_92512683_92512782	0.946935	GCAGCAU	AF145285|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	U65313|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151965|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK152792|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK172256|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC048176|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK145697|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK076117|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK167186|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080795|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_011816|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr4_-_149112082_149112163	0.922756	GCAGCAU	AK079157|Tmem201|230917|transmembrane protein 201	AK078532|Tmem201|230917|transmembrane protein 201	AK039221|Tmem201|230917|transmembrane protein 201	BC072645|Tmem201|230917|transmembrane protein 201	NM_001025106|Tmem201|230917|transmembrane protein 201	NM_177672|Tmem201|230917|transmembrane protein 201	AK086543|Tmem201|230917|transmembrane protein 201	AK153631|Tmem201|230917|transmembrane protein 201
mm9_v1_chr2_+_4073908_4073934	0.919229	GCAGCAU	NM_172475|Frmd4a|209630|FERM domain containing 4A	AK034706|Frmd4a|209630|FERM domain containing 4A	BC058672|Frmd4a|209630|FERM domain containing 4A	AK163887|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr9_+_102408467_102408467	0.886448	GCAGCAU	AJ293727|Ky|16716|kyphoscoliosis peptidase	NM_024291|Ky|16716|kyphoscoliosis peptidase
mm9_v1_chr14_-_71166340_71166465	0.860937	GCAGCAU	AJ297360|Xpo7|65246|exportin 7	AK041768|Xpo7|65246|exportin 7	AK051105|Xpo7|65246|exportin 7	AK035775|Xpo7|65246|exportin 7	BC029702|Xpo7|65246|exportin 7	AK164595|Xpo7|65246|exportin 7	NM_023045|Xpo7|65246|exportin 7
mm9_v1_chr8_-_106966899_106966946	0.856124	GCAGCAU	BC058645|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK050575|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	NM_001013380|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2
mm9_v1_chr3_+_55046447_55046542	0.843156	GCAGCAU	AK147831|Dclk1|13175|doublecortin-like kinase 1	NM_001111053|Dclk1|13175|doublecortin-like kinase 1	NM_001195538|Dclk1|13175|doublecortin-like kinase 1	NM_019978|Dclk1|13175|doublecortin-like kinase 1	AB093234|Dclk1|13175|doublecortin-like kinase 1	AK164993|Dclk1|13175|doublecortin-like kinase 1	AF155820|Dclk1|13175|doublecortin-like kinase 1	BC064783|Dclk1|13175|doublecortin-like kinase 1	BC021354|Dclk1|13175|doublecortin-like kinase 1	AK043874|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr6_-_23198140_23198361	0.842781	GCAGCAU	AK014242|Fezf1|73191|Fez family zinc finger 1	BC119565|Fezf1|73191|Fez family zinc finger 1	BC119566|Fezf1|73191|Fez family zinc finger 1	NM_028462|Fezf1|73191|Fez family zinc finger 1	BC049157|Fezf1|73191|Fez family zinc finger 1
mm9_v1_chr7_+_82600419_82600490	0.839552	GCAGCAU	NM_029332|Akap13|75547|A kinase (PRKA) anchor protein 13	AK157986|Akap13|75547|A kinase (PRKA) anchor protein 13	AK172125|Akap13|75547|A kinase (PRKA) anchor protein 13
mm9_v1_chr1_+_87690003_87690086	0.83596	GCAGCAU	NM_133781|Cab39|12283|calcium binding protein 39	AK144665|Cab39|12283|calcium binding protein 39
mm9_v1_chr9_-_62994774_62994817	0.827326	GCAGCAU	BC138063|Skor1|207667|SKI family transcriptional corepressor 1	AK049035|Skor1|207667|SKI family transcriptional corepressor 1	NM_172446|Skor1|207667|SKI family transcriptional corepressor 1	AK134840|Skor1|207667|SKI family transcriptional corepressor 1	AB185113|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163755|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163757|Skor1|207667|SKI family transcriptional corepressor 1
mm9_v1_chr12_+_111723922_111723992	0.816415	GCAGCAU	AK031584|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081457|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081458|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_012023|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	BC003979|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr12_-_42212337_42212337	0.813458	GCAGCAU	BC069041|Lrrn3|16981|leucine rich repeat protein 3, neuronal	NM_010733|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr7_+_129210684_129210770	0.804473	GCAGCAU	AK077395|Ubfd1|28018|ubiquitin family domain containing 1	NM_138589|Ubfd1|28018|ubiquitin family domain containing 1	BC011313|Ubfd1|28018|ubiquitin family domain containing 1	AK033428|Ubfd1|28018|ubiquitin family domain containing 1
mm9_v1_chr9_+_106073255_106073259	0.798309	GCAGCAU	AK037620|Wdr82|77305|WD repeat domain containing 82	AK035109|Wdr82|77305|WD repeat domain containing 82	AK149692|Wdr82|77305|WD repeat domain containing 82	AK159240|Wdr82|77305|WD repeat domain containing 82	AK172474|Wdr82|77305|WD repeat domain containing 82	NM_029896|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr5_-_38108301_38108391	0.793513	GCAGCAU	BC052404|Stk32b|64293|serine/threonine kinase 32B	BC058412|Stk32b|64293|serine/threonine kinase 32B	BC056396|Stk32b|64293|serine/threonine kinase 32B	AK082468|Stk32b|64293|serine/threonine kinase 32B	NM_022416|Stk32b|64293|serine/threonine kinase 32B
mm9_v1_chr2_+_75670230_75670233	0.74091	GCAGCAU	AK031049|Agps|228061|alkylglycerone phosphate synthase	NM_172666|Agps|228061|alkylglycerone phosphate synthase
mm9_v1_chr8_+_81552335_81552485	0.73898	GCAGCAU	BC094552|Zfp827|622675|zinc finger protein 827	NM_178267|Zfp827|622675|zinc finger protein 827	BC151183|Zfp827|622675|zinc finger protein 827	AK154905|Zfp827|622675|zinc finger protein 827
mm9_v1_chr8_-_89409079_89409204	0.738487	GCAGCAU	AK134934|N4bp1|80750|NEDD4 binding protein 1	AK172981|N4bp1|80750|NEDD4 binding protein 1	AK147522|N4bp1|80750|NEDD4 binding protein 1	NM_030563|N4bp1|80750|NEDD4 binding protein 1
mm9_v1_chr12_+_66326503_66326503	0.735821	GCAGCAU	AK015014|Wdr20b|70948|WD repeat domain 20b	NM_027614|Wdr20b|70948|WD repeat domain 20b
mm9_v1_chrX_+_102959815_102959879	0.728315	GCAGCAU	BC132641|Fgf16|80903|fibroblast growth factor 16	BC137993|Fgf16|80903|fibroblast growth factor 16	NM_030614|Fgf16|80903|fibroblast growth factor 16	AB049219|Fgf16|80903|fibroblast growth factor 16	AF292104|Fgf16|80903|fibroblast growth factor 16
mm9_v1_chr6_-_13627853_13628000	0.712824	GCAGCAU	BC145708|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	BC145710|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK170526|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK046745|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	NM_175312|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene
mm9_v1_chr6_-_72330414_72330474	0.709264	GCAGCAU	BC086925|Vamp5|53620|vesicle-associated membrane protein 5	AK009266|Vamp5|53620|vesicle-associated membrane protein 5	NM_001080742|Vamp5|53620|vesicle-associated membrane protein 5	NM_016872|Vamp5|53620|vesicle-associated membrane protein 5
mm9_v1_chr4_+_13678443_13678575	0.695943	GCAGCAU	NM_001111027|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr19_-_41876509_41876573	0.692983	GCAGCAU	AK220317|Arhgap19|71085|Rho GTPase activating protein 19	BC086680|Arhgap19|71085|Rho GTPase activating protein 19	AK044841|Arhgap19|71085|Rho GTPase activating protein 19	AK016763|Arhgap19|71085|Rho GTPase activating protein 19	AK164477|Arhgap19|71085|Rho GTPase activating protein 19	BC139195|Arhgap19|71085|Rho GTPase activating protein 19	NM_001163495|Arhgap19|71085|Rho GTPase activating protein 19	NM_027667|Arhgap19|71085|Rho GTPase activating protein 19
mm9_v1_chrX_+_148237785_148237953	0.675428	GCAGCAU	AK163416|Huwe1|59026|HECT, UBA and WWE domain containing 1	NM_021523|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK049460|Huwe1|59026|HECT, UBA and WWE domain containing 1	DQ097265|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK045183|Huwe1|59026|HECT, UBA and WWE domain containing 1	AY772010|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK165140|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK165648|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK031374|Huwe1|59026|HECT, UBA and WWE domain containing 1
mm9_v1_chr3_+_55265654_55265683	0.658476	GCAGCAU	NM_001111051|Dclk1|13175|doublecortin-like kinase 1	NM_001111052|Dclk1|13175|doublecortin-like kinase 1	NM_001195539|Dclk1|13175|doublecortin-like kinase 1	NM_001195540|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr1_+_168931547_168931719	0.641246	GCAGCAU	NM_001160261|Fam78b|226610|family with sequence similarity 78, member B	NM_001160262|Fam78b|226610|family with sequence similarity 78, member B	NM_175461|Fam78b|226610|family with sequence similarity 78, member B	BC132161|Fam78b|226610|family with sequence similarity 78, member B	BC132525|Fam78b|226610|family with sequence similarity 78, member B	AK144212|Fam78b|226610|family with sequence similarity 78, member B	AK047703|Fam78b|226610|family with sequence similarity 78, member B	BC066094|Fam78b|226610|family with sequence similarity 78, member B
mm9_v1_chr14_-_111154292_111154370	0.637518	GCAGCAU	AK029275|Slitrk6|239250|SLIT and NTRK-like family, member 6	AK044796|Slitrk6|239250|SLIT and NTRK-like family, member 6	NM_175499|Slitrk6|239250|SLIT and NTRK-like family, member 6
mm9_v1_chr10_-_93498488_93498564	0.63383	GCAGCAU	AK036017|Vezt|215008|vezatin, adherens junctions transmembrane protein	NM_172538|Vezt|215008|vezatin, adherens junctions transmembrane protein	AK041354|Vezt|215008|vezatin, adherens junctions transmembrane protein	AK031848|Vezt|215008|vezatin, adherens junctions transmembrane protein
mm9_v1_chr16_-_18235102_18235235	0.625227	GCAGCAU	AY668947|Zdhhc8|27801|zinc finger, DHHC domain containing 8	AY894892|Zdhhc8|27801|zinc finger, DHHC domain containing 8	NM_172151|Zdhhc8|27801|zinc finger, DHHC domain containing 8
mm9_v1_chr4_+_129138915_129138922	0.612396	GCAGCAU	BC049111|Bsdc1|100383|BSD domain containing 1	NM_133889|Bsdc1|100383|BSD domain containing 1
mm9_v1_chr8_+_113443764_113443921	0.602735	GCAGCAU	NM_009179|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	AK031052|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	AK034863|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	AK053827|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	AK029246|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	BC066064|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2
mm9_v1_chr12_+_106923552_106923650	0.600979	GCAGCAU	NM_178613|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK171097|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	BC031494|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK168962|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK042664|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK079775|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK020785|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK029484|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene
mm9_v1_chr8_+_96334452_96334737	0.591567	GCAGCAU	AK160434|Gnao1|14681|guanine nucleotide binding protein, alpha O	AK035907|Gnao1|14681|guanine nucleotide binding protein, alpha O	NM_001113384|Gnao1|14681|guanine nucleotide binding protein, alpha O	NM_010308|Gnao1|14681|guanine nucleotide binding protein, alpha O
mm9_v1_chr6_+_133985717_133985901	0.580474	GCAGCAU	AK155150|Etv6|14011|ets variant gene 6 (TEL oncogene)	NM_007961|Etv6|14011|ets variant gene 6 (TEL oncogene)	AK154569|Etv6|14011|ets variant gene 6 (TEL oncogene)
mm9_v1_chr15_+_89041957_89042070	0.572388	GCAGCAU	AK084684|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	NM_026813|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	NM_027805|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	AK083335|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	BC024879|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	AK018403|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2
mm9_v1_chr9_-_20896404_20896431	0.557155	GCAGCAU	BC108392|Raver1|71766|ribonucleoprotein, PTB-binding 1	BC058271|Raver1|71766|ribonucleoprotein, PTB-binding 1	NM_027911|Raver1|71766|ribonucleoprotein, PTB-binding 1
mm9_v1_chr1_+_70772288_70772496	0.556918	GCAGCAU	BC094541|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	NM_177164|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	AK083856|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	BC064448|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	AK080585|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like
mm9_v1_chr4_+_15192892_15192977	0.544662	GCAGCAU	AK156282|Tmem64|100201|transmembrane protein 64	NM_181401|Tmem64|100201|transmembrane protein 64	AY147882|Tmem64|100201|transmembrane protein 64	BC030341|Tmem64|100201|transmembrane protein 64
mm9_v1_chr10_+_67442317_67442462	0.525732	GCAGCAU	AK052662|Rtkn2|170799|rhotekin 2	NM_001081346|Rtkn2|170799|rhotekin 2	BC158093|Rtkn2|170799|rhotekin 2	BC116341|Rtkn2|170799|rhotekin 2	BC116342|Rtkn2|170799|rhotekin 2	AK045134|Rtkn2|170799|rhotekin 2	AK030986|Rtkn2|170799|rhotekin 2
mm9_v1_chr6_-_119146426_119146446	0.522832	GCAGCAU	AK052162|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit	NM_009781|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit
mm9_v1_chr6_-_116143380_116143517	0.512013	GCAGCAU	AK173022|Tmcc1|330401|transmembrane and coiled coil domains 1	NM_177412|Tmcc1|330401|transmembrane and coiled coil domains 1
mm9_v1_chr4_+_13670425_13670448	0.49388	GCAGCAU	AK142006|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_001111026|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr9_-_62996767_62996767	0.491382	GCAGCAU	AK029916|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163758|Skor1|207667|SKI family transcriptional corepressor 1
mm9_v1_chr4_-_125998912_125998946	0.471143	GCAGCAU	AK147034|Adprhl2|100206|ADP-ribosylhydrolase like 2	BC023177|Adprhl2|100206|ADP-ribosylhydrolase like 2	AK169070|Adprhl2|100206|ADP-ribosylhydrolase like 2	AK143583|Adprhl2|100206|ADP-ribosylhydrolase like 2	AK171780|Adprhl2|100206|ADP-ribosylhydrolase like 2	AK149904|Adprhl2|100206|ADP-ribosylhydrolase like 2	AK150202|Adprhl2|100206|ADP-ribosylhydrolase like 2	AJ427296|Adprhl2|100206|ADP-ribosylhydrolase like 2	NM_133883|Adprhl2|100206|ADP-ribosylhydrolase like 2
mm9_v1_chr11_-_121249511_121249580	0.467631	GCAGCAU	BC096601|Rab40b|217371|Rab40b, member RAS oncogene family	NM_139147|Rab40b|217371|Rab40b, member RAS oncogene family
mm9_v1_chr11_+_58144207_58144291	0.461635	GCAGCAU	AK156171|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK159202|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK172333|Sh3bp5l|79566|SH3 binding domain protein 5 like	NM_001161338|Sh3bp5l|79566|SH3 binding domain protein 5 like	NM_024480|Sh3bp5l|79566|SH3 binding domain protein 5 like	BC094418|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK166491|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK144928|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK086088|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK150129|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK167203|Sh3bp5l|79566|SH3 binding domain protein 5 like
mm9_v1_chr5_+_138526303_138526341	0.422253	GCAGCAU	NM_029869|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	NM_133906|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK036807|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK031759|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020355|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK154831|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020039|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK054323|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1
mm9_v1_chr7_-_125728199_125728260	0.420308	GCAGCAU	AK083189|Tmc7|209760|transmembrane channel-like gene family 7	NM_172476|Tmc7|209760|transmembrane channel-like gene family 7	AK006547|Tmc7|209760|transmembrane channel-like gene family 7	AK082562|Tmc7|209760|transmembrane channel-like gene family 7	AK132820|Tmc7|209760|transmembrane channel-like gene family 7	AY263161|Tmc7|209760|transmembrane channel-like gene family 7	AY236499|Tmc7|209760|transmembrane channel-like gene family 7
mm9_v1_chr6_-_32538191_32538191	0.416598	GCAGCAU	AB073228|Plxna4|243743|plexin A4	NM_175750|Plxna4|243743|plexin A4
mm9_v1_chr2_-_168592528_168592700	0.407913	GCAGCAU	AY463371|Sall4|99377|sal-like 4 (Drosophila)	AY463372|Sall4|99377|sal-like 4 (Drosophila)	AY463373|Sall4|99377|sal-like 4 (Drosophila)	AK049188|Sall4|99377|sal-like 4 (Drosophila)	AK145388|Sall4|99377|sal-like 4 (Drosophila)	BC099928|Sall4|99377|sal-like 4 (Drosophila)	BC053716|Sall4|99377|sal-like 4 (Drosophila)	NM_175303|Sall4|99377|sal-like 4 (Drosophila)	NM_201395|Sall4|99377|sal-like 4 (Drosophila)	NM_201396|Sall4|99377|sal-like 4 (Drosophila)
mm9_v1_chr3_+_40754552_40754775	0.403668	GCAGCAU	AK160155|Larp1b|214048|La ribonucleoprotein domain family, member 1B	NM_001040399|Larp1b|214048|La ribonucleoprotein domain family, member 1B	AK076732|Larp1b|214048|La ribonucleoprotein domain family, member 1B	AK163348|Larp1b|214048|La ribonucleoprotein domain family, member 1B
mm9_v1_chr1_-_36603970_36604088	0.397656	GCAGCAU	AK177190|Ankrd39|109346|ankyrin repeat domain 39	AK018681|Ankrd39|109346|ankyrin repeat domain 39	AK042896|Ankrd39|109346|ankyrin repeat domain 39	NM_026241|Ankrd39|109346|ankyrin repeat domain 39	AK160231|Ankrd39|109346|ankyrin repeat domain 39	AK081207|Ankrd39|109346|ankyrin repeat domain 39	AK030874|Ankrd39|109346|ankyrin repeat domain 39	AK158215|Ankrd39|109346|ankyrin repeat domain 39	BC117004|Ankrd39|109346|ankyrin repeat domain 39	BC119100|Ankrd39|109346|ankyrin repeat domain 39	BC144893|Ankrd39|109346|ankyrin repeat domain 39
mm9_v1_chrX_-_101866402_101866402	0.387057	GCAGCAU	AK132304|Zdhhc15|108672|zinc finger, DHHC domain containing 15	NM_175358|Zdhhc15|108672|zinc finger, DHHC domain containing 15
mm9_v1_chr19_+_29038321_29038434	0.377654	GCAGCAU	AK016572|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2	NM_028922|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2	AK041581|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2
mm9_v1_chr2_+_4480799_4480871	0.369179	GCAGCAU	AK077327|Frmd4a|209630|FERM domain containing 4A	NM_001177844|Frmd4a|209630|FERM domain containing 4A	AK148414|Frmd4a|209630|FERM domain containing 4A	AK029073|Frmd4a|209630|FERM domain containing 4A	AK171532|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr3_+_21975544_21975859	0.360552	GCAGCAU	AK036064|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1	NM_030732|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1	AK033347|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1
mm9_v1_chr5_+_129525943_129526053	0.356628	GCAGCAU	AK002436|Ran|19384|RAN, member RAS oncogene family	NM_009391|Ran|19384|RAN, member RAS oncogene family	S83456|Ran|19384|RAN, member RAS oncogene family
mm9_v1_chr5_-_37087204_37087208	0.351294	GCAGCAU	AK033480|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed	NM_001081232|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed
mm9_v1_chr19_+_30104914_30105033	0.339075	GCAGCAU	AK082518|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK031036|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK042321|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK051743|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK080925|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK041564|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	BC060241|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	NM_144873|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2
mm9_v1_chr1_-_158135155_158135155	0.328662	GCAGCAU	AK039197|Fam163a|329274|family with sequence similarity 163, member A	NM_177838|Fam163a|329274|family with sequence similarity 163, member A
mm9_v1_chr12_-_86311718_86311851	0.308857	GCAGCAU	BC057351|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	BC079590|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK147878|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK154529|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK147491|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	NM_178065|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene
mm9_v1_chr16_+_94792513_94792513	0.280935	GCAGCAU	NM_001113389|Dyrk1a|13548|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
mm9_v1_chr8_-_80960532_80960550	0.259981	GCAGCAU	S68377|Pou4f2|18997|POU domain, class 4, transcription factor 2	AK084240|Pou4f2|18997|POU domain, class 4, transcription factor 2	AK087546|Pou4f2|18997|POU domain, class 4, transcription factor 2	NM_138944|Pou4f2|18997|POU domain, class 4, transcription factor 2
mm9_v1_chr7_-_87833762_87833805	0.232909	GCAGCAU	AK081296|Crtc3|70461|CREB regulated transcription coactivator 3	AK144840|Crtc3|70461|CREB regulated transcription coactivator 3	NM_173863|Crtc3|70461|CREB regulated transcription coactivator 3
mm9_v1_chr6_-_91361356_91361402	0.232531	GCAGCAU	BC049093|Wnt7a|22421|wingless-related MMTV integration site 7A	BC057586|Wnt7a|22421|wingless-related MMTV integration site 7A	AK004683|Wnt7a|22421|wingless-related MMTV integration site 7A	NM_009527|Wnt7a|22421|wingless-related MMTV integration site 7A
mm9_v1_chr11_-_116442760_116442770	0.204923	GCAGCAU	AK129431|Ube2o|217342|ubiquitin-conjugating enzyme E2O	NM_173755|Ube2o|217342|ubiquitin-conjugating enzyme E2O
mm9_v1_chr4_+_147965596_147965685	0.176944	GCAGCAU	AK028359|Srm|20810|spermidine synthase	NM_009272|Srm|20810|spermidine synthase	AK051101|Srm|20810|spermidine synthase	BC005566|Srm|20810|spermidine synthase	L19311|Srm|20810|spermidine synthase	AK146395|Srm|20810|spermidine synthase
mm9_v1_chr17_-_29144679_29144968	0.146268	GCAGCAU	AK184259|Stk38|106504|serine/threonine kinase 38	AY292399|Stk38|106504|serine/threonine kinase 38	AK020024|Stk38|106504|serine/threonine kinase 38	AK133644|Stk38|106504|serine/threonine kinase 38	AK164081|Stk38|106504|serine/threonine kinase 38	AK084433|Stk38|106504|serine/threonine kinase 38	BC009658|Stk38|106504|serine/threonine kinase 38	NM_134115|Stk38|106504|serine/threonine kinase 38	AK035731|Stk38|106504|serine/threonine kinase 38	AK080179|Stk38|106504|serine/threonine kinase 38
mm9_v1_chr7_+_89484203_89484257	0.134038	GCAGCAU	NM_001190374|Adamtsl3|269959|ADAMTS-like 3
mm9_v1_chr2_-_103637795_103637829	0.132096	GCAGCAU	NM_001111291|Caprin1|53872|cell cycle associated protein 1	NM_016739|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr8_+_109817355_109817761	0.130896	GCAGCAU	AK045123|Nfat5|54446|nuclear factor of activated T-cells 5	AK134022|Nfat5|54446|nuclear factor of activated T-cells 5	NM_018823|Nfat5|54446|nuclear factor of activated T-cells 5	NM_133957|Nfat5|54446|nuclear factor of activated T-cells 5	AK052632|Nfat5|54446|nuclear factor of activated T-cells 5	AF162853|Nfat5|54446|nuclear factor of activated T-cells 5	AK172011|Nfat5|54446|nuclear factor of activated T-cells 5	AF369980|Nfat5|54446|nuclear factor of activated T-cells 5	AF453571|Nfat5|54446|nuclear factor of activated T-cells 5
mm9_v1_chr11_-_21471829_21471936	0.129026	GCAGCAU	AK005237|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	NM_008618|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)
mm9_v1_chr14_-_37748753_37748753	0.120461	GCAGCAU	AK005931|Gcap14|72972|granule cell antiserum positive 14	BC048641|Gcap14|72972|granule cell antiserum positive 14	BC060947|Gcap14|72972|granule cell antiserum positive 14	NM_028407|Gcap14|72972|granule cell antiserum positive 14
mm9_v1_chr15_-_90880241_90880381	0.119677	GCAGCAU	AF202892|Kif21a|16564|kinesin family member 21A	BC060698|Kif21a|16564|kinesin family member 21A	BC062896|Kif21a|16564|kinesin family member 21A	AK163536|Kif21a|16564|kinesin family member 21A	AK047880|Kif21a|16564|kinesin family member 21A	AK147436|Kif21a|16564|kinesin family member 21A	AK008213|Kif21a|16564|kinesin family member 21A	AK047350|Kif21a|16564|kinesin family member 21A	NM_001109040|Kif21a|16564|kinesin family member 21A	NM_001109041|Kif21a|16564|kinesin family member 21A	NM_001109042|Kif21a|16564|kinesin family member 21A	NM_016705|Kif21a|16564|kinesin family member 21A	AK019525|Kif21a|16564|kinesin family member 21A
mm9_v1_chr9_+_66561492_66561635	0.0994117	GCAGCAU	NM_178396|Car12|76459|carbonic anyhydrase 12	AK052639|Car12|76459|carbonic anyhydrase 12	AK157977|Car12|76459|carbonic anyhydrase 12	AK037694|Car12|76459|carbonic anyhydrase 12	AK166132|Car12|76459|carbonic anyhydrase 12	BC031385|Car12|76459|carbonic anyhydrase 12	BC035941|Car12|76459|carbonic anyhydrase 12	AK170859|Car12|76459|carbonic anyhydrase 12	BC033432|Car12|76459|carbonic anyhydrase 12
mm9_v1_chr9_-_61794540_61794605	0.0938289	GCAGCAU	AK013939|Kif23|71819|kinesin family member 23	AK164409|Kif23|71819|kinesin family member 23	BC047273|Kif23|71819|kinesin family member 23	BC003363|Kif23|71819|kinesin family member 23	AK030771|Kif23|71819|kinesin family member 23	NM_024245|Kif23|71819|kinesin family member 23
mm9_v1_chr8_-_87211726_87211763	0.0866854	GCAGCAU	BC048157|Nacc1|66830|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	AK012935|Nacc1|66830|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	BC052706|Nacc1|66830|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	BC054800|Nacc1|66830|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	NM_025788|Nacc1|66830|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
mm9_v1_chr11_-_120209770_120209811	0.0788718	GCAGCAU	M21495|Actg1|11465|actin, gamma, cytoplasmic 1	BC099371|Actg1|11465|actin, gamma, cytoplasmic 1	BC003337|Actg1|11465|actin, gamma, cytoplasmic 1	BC018571|Actg1|11465|actin, gamma, cytoplasmic 1	BC021796|Actg1|11465|actin, gamma, cytoplasmic 1	BC023248|Actg1|11465|actin, gamma, cytoplasmic 1	NM_009609|Actg1|11465|actin, gamma, cytoplasmic 1	AF195094|Actg1|11465|actin, gamma, cytoplasmic 1	AK149927|Actg1|11465|actin, gamma, cytoplasmic 1	AK150209|Actg1|11465|actin, gamma, cytoplasmic 1	AK162157|Actg1|11465|actin, gamma, cytoplasmic 1	AK076081|Actg1|11465|actin, gamma, cytoplasmic 1	AK087983|Actg1|11465|actin, gamma, cytoplasmic 1	AK157726|Actg1|11465|actin, gamma, cytoplasmic 1	AK012251|Actg1|11465|actin, gamma, cytoplasmic 1	AK152202|Actg1|11465|actin, gamma, cytoplasmic 1	AK153446|Actg1|11465|actin, gamma, cytoplasmic 1	AK159867|Actg1|11465|actin, gamma, cytoplasmic 1
mm9_v1_chr15_-_31297286_31297513	0.070607	GCAGCAU	AK089667|Ankrd33b|67434|ankyrin repeat domain 33B	AK170894|Ankrd33b|67434|ankyrin repeat domain 33B	AK017844|Ankrd33b|67434|ankyrin repeat domain 33B	AK002572|Ankrd33b|67434|ankyrin repeat domain 33B	AK012871|Ankrd33b|67434|ankyrin repeat domain 33B	AK156757|Ankrd33b|67434|ankyrin repeat domain 33B	BC100327|Ankrd33b|67434|ankyrin repeat domain 33B	NM_001164441|Ankrd33b|67434|ankyrin repeat domain 33B	NM_026153|Ankrd33b|67434|ankyrin repeat domain 33B	NM_027496|Ankrd33b|67434|ankyrin repeat domain 33B
mm9_v1_chr12_-_47919695_47919761	0.067574	GCAGCAU	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr10_+_70810540_70810588	0.0134103	GCAGCAU	BC052463|Ipmk|69718|inositol polyphosphate multikinase	NM_027184|Ipmk|69718|inositol polyphosphate multikinase	AK036978|Ipmk|69718|inositol polyphosphate multikinase	AK010523|Ipmk|69718|inositol polyphosphate multikinase	AK172246|Ipmk|69718|inositol polyphosphate multikinase	AK171355|Ipmk|69718|inositol polyphosphate multikinase
