mm9_v1_chr2_+_136539143_136539198	24.2782	GCUGGUG	NM_011428|Snap25|20614|synaptosomal-associated protein 25	AK078038|Snap25|20614|synaptosomal-associated protein 25
mm9_v1_chr5_-_121161656_121161677	21.3608	GCUGGUG	AK169455|Dtx1|14357|deltex 1 homolog (Drosophila)	NM_008052|Dtx1|14357|deltex 1 homolog (Drosophila)
mm9_v1_chr5_+_130845319_130845359	20.6254	GCUGGUG	NM_181045|Caln1|140904|calneuron 1	AF282251|Caln1|140904|calneuron 1	AK035865|Caln1|140904|calneuron 1
mm9_v1_chr7_+_134094045_134094242	19.3572	GCUGGUG	AK034088|Sez6l2|233878|seizure related 6 homolog like 2	AK165738|Sez6l2|233878|seizure related 6 homolog like 2	BC096615|Sez6l2|233878|seizure related 6 homolog like 2	BC011475|Sez6l2|233878|seizure related 6 homolog like 2	NM_144926|Sez6l2|233878|seizure related 6 homolog like 2
mm9_v1_chr3_+_95985065_95985205	19.0942	GCUGGUG	AK080525|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK144166|Sv2a|64051|synaptic vesicle glycoprotein 2 a	BC046587|Sv2a|64051|synaptic vesicle glycoprotein 2 a	NM_022030|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK080502|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK028318|Sv2a|64051|synaptic vesicle glycoprotein 2 a
mm9_v1_chr5_+_130924661_130924722	18.8027	GCUGGUG	NM_021371|Caln1|140904|calneuron 1	AB041539|Caln1|140904|calneuron 1	BC057129|Caln1|140904|calneuron 1	BC058963|Caln1|140904|calneuron 1	AK158892|Caln1|140904|calneuron 1
mm9_v1_chr4_+_84851330_84851416	16.2057	GCUGGUG	AK044370|Sh3gl2|20404|SH3-domain GRB2-like 2	BC018385|Sh3gl2|20404|SH3-domain GRB2-like 2	NM_019535|Sh3gl2|20404|SH3-domain GRB2-like 2	AK043424|Sh3gl2|20404|SH3-domain GRB2-like 2	AK139337|Sh3gl2|20404|SH3-domain GRB2-like 2	U58886|Sh3gl2|20404|SH3-domain GRB2-like 2
mm9_v1_chr18_+_36124483_36124488	15.1415	GCUGGUG	BC066026|Psd2|74002|pleckstrin and Sec7 domain containing 2	NM_028707|Psd2|74002|pleckstrin and Sec7 domain containing 2
mm9_v1_chr10_-_80945445_80945464	14.8482	GCUGGUG	NM_176954|Celf5|319586|CUGBP, Elav-like family member 5
mm9_v1_chr6_+_114232618_114232629	14.6201	GCUGGUG	NM_178703|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm9_v1_chr12_+_85792371_85792472	14.2307	GCUGGUG	BC120496|Lin52|217708|lin-52 homolog (C. elegans)	BC137693|Lin52|217708|lin-52 homolog (C. elegans)	AK030923|Lin52|217708|lin-52 homolog (C. elegans)	NM_173756|Lin52|217708|lin-52 homolog (C. elegans)
mm9_v1_chr7_+_52419289_52419313	13.7878	GCUGGUG	NM_182993|Slc17a7|72961|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
mm9_v1_chr14_-_20796411_20796481	13.7098	GCUGGUG	AK158697|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	NM_001038637|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	NM_010315|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2
mm9_v1_chr15_+_100766701_100766755	12.8372	GCUGGUG	NM_011323|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	U26707|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AF049617|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr8_-_30330079_30330107	12.4059	GCUGGUG	AJ487854|Unc5d|210801|unc-5 homolog D (C. elegans)	NM_153135|Unc5d|210801|unc-5 homolog D (C. elegans)
mm9_v1_chr11_-_119409041_119409133	12.0903	GCUGGUG	BC139018|Nptx1|18164|neuronal pentraxin 1	BC139020|Nptx1|18164|neuronal pentraxin 1	BC093479|Nptx1|18164|neuronal pentraxin 1	NM_008730|Nptx1|18164|neuronal pentraxin 1
mm9_v1_chr15_+_100701068_100701116	12.0231	GCUGGUG	NM_001077499|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AK158609|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr2_-_29979973_29980080	11.6917	GCUGGUG	BC048924|Zer1|227693|zer-1 homolog (C. elegans)	NM_178694|Zer1|227693|zer-1 homolog (C. elegans)	AK087046|Zer1|227693|zer-1 homolog (C. elegans)	AK081355|Zer1|227693|zer-1 homolog (C. elegans)	AK048853|Zer1|227693|zer-1 homolog (C. elegans)	BC057021|Zer1|227693|zer-1 homolog (C. elegans)	AK155401|Zer1|227693|zer-1 homolog (C. elegans)
mm9_v1_chr2_+_157740281_157740500	11.0553	GCUGGUG	NM_198627|Vstm2l|277432|V-set and transmembrane domain containing 2-like	BC058538|Vstm2l|277432|V-set and transmembrane domain containing 2-like
mm9_v1_chr13_-_54867800_54867840	11.0431	GCUGGUG	BC019409|Sncb|104069|synuclein, beta	NM_033610|Sncb|104069|synuclein, beta
mm9_v1_chr2_-_79296732_79296799	10.6874	GCUGGUG	BC094611|Neurod1|18012|neurogenic differentiation 1	BC018241|Neurod1|18012|neurogenic differentiation 1	AK018781|Neurod1|18012|neurogenic differentiation 1	AK005073|Neurod1|18012|neurogenic differentiation 1	NM_010894|Neurod1|18012|neurogenic differentiation 1	AK028055|Neurod1|18012|neurogenic differentiation 1
mm9_v1_chr4_+_138011061_138011100	10.5668	GCUGGUG	NM_025451|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1	AY523601|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm9_v1_chr4_+_9196439_9196508	10.4865	GCUGGUG	AK034888|Clvs1|74438|clavesin 1	AK083985|Clvs1|74438|clavesin 1	AK047462|Clvs1|74438|clavesin 1	AK083810|Clvs1|74438|clavesin 1	NM_028940|Clvs1|74438|clavesin 1	AK084350|Clvs1|74438|clavesin 1	AK043072|Clvs1|74438|clavesin 1	AK032549|Clvs1|74438|clavesin 1	BC062923|Clvs1|74438|clavesin 1
mm9_v1_chr6_+_8459595_8459595	10.3785	GCUGGUG	NM_133236|Glcci1|170772|glucocorticoid induced transcript 1
mm9_v1_chrX_-_131745187_131745225	10.1444	GCUGGUG	AK005297|Tceal6|66104|transcription elongation factor A (SII)-like 6	BC087890|Tceal6|66104|transcription elongation factor A (SII)-like 6	NM_025355|Tceal6|66104|transcription elongation factor A (SII)-like 6
mm9_v1_chr10_+_52410306_52410508	10.0698	GCUGGUG	NM_178675|Slc35f1|215085|solute carrier family 35, member F1	AK038601|Slc35f1|215085|solute carrier family 35, member F1	AK053426|Slc35f1|215085|solute carrier family 35, member F1	AK139331|Slc35f1|215085|solute carrier family 35, member F1	AK048957|Slc35f1|215085|solute carrier family 35, member F1	AK165021|Slc35f1|215085|solute carrier family 35, member F1	AK053545|Slc35f1|215085|solute carrier family 35, member F1	AK083768|Slc35f1|215085|solute carrier family 35, member F1	AK166268|Slc35f1|215085|solute carrier family 35, member F1	BC059075|Slc35f1|215085|solute carrier family 35, member F1	AK163806|Slc35f1|215085|solute carrier family 35, member F1
mm9_v1_chr1_+_75476106_75476188	10.0064	GCUGGUG	NM_177056|Tmem198|319998|transmembrane protein 198	BC059868|Tmem198|319998|transmembrane protein 198	AK038957|Tmem198|319998|transmembrane protein 198	AK082334|Tmem198|319998|transmembrane protein 198
mm9_v1_chr6_+_55401971_55401981	9.85744	GCUGGUG	AK083108|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	NM_001025372|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	NM_007407|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	AK042820|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1
mm9_v1_chr5_-_21850490_21850524	9.74348	GCUGGUG	U24703|Reln|19699|reelin	AK035849|Reln|19699|reelin	AK042773|Reln|19699|reelin	AK082447|Reln|19699|reelin	AK082508|Reln|19699|reelin	AK164676|Reln|19699|reelin	NM_011261|Reln|19699|reelin
mm9_v1_chrX_-_132738383_132738456	9.58934	GCUGGUG	AK032140|Tceal5|331532|transcription elongation factor A (SII)-like 5	NM_177919|Tceal5|331532|transcription elongation factor A (SII)-like 5	BC100415|Tceal5|331532|transcription elongation factor A (SII)-like 5
mm9_v1_chr2_-_121632749_121632811	9.50396	GCUGGUG	AK054484|Frmd5|228564|FERM domain containing 5	BC062889|Frmd5|228564|FERM domain containing 5	AK146383|Frmd5|228564|FERM domain containing 5	AK048865|Frmd5|228564|FERM domain containing 5	NM_172673|Frmd5|228564|FERM domain containing 5
mm9_v1_chr15_-_96472392_96472392	9.44989	GCUGGUG	AK034130|Slc38a1|105727|solute carrier family 38, member 1	NM_134086|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr11_-_69373707_69373738	9.12042	GCUGGUG	NM_007911|Efnb3|13643|ephrin B3
mm9_v1_chr3_-_126646303_126646303	9.07912	GCUGGUG	BC043123|Ank2|109676|ankyrin 2, brain	NM_001034168|Ank2|109676|ankyrin 2, brain
mm9_v1_chr11_+_16951911_16951955	8.82006	GCUGGUG	AK019934|Cnrip1|380686|cannabinoid receptor interacting protein 1	BC087946|Cnrip1|380686|cannabinoid receptor interacting protein 1	NM_029861|Cnrip1|380686|cannabinoid receptor interacting protein 1
mm9_v1_chr15_-_96473193_96473343	8.73311	GCUGGUG	AK162612|Slc38a1|105727|solute carrier family 38, member 1	AK081724|Slc38a1|105727|solute carrier family 38, member 1	NM_001166458|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr1_+_138027943_138028013	8.70005	GCUGGUG	NM_001039472|Kif21b|16565|kinesin family member 21B
mm9_v1_chr6_-_112897259_112897274	8.68799	GCUGGUG	AK045508|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	AK051262|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	NM_080448|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3
mm9_v1_chr19_-_46401618_46401645	8.4957	GCUGGUG	BC057353|Psd|73728|pleckstrin and Sec7 domain containing	NM_028627|Psd|73728|pleckstrin and Sec7 domain containing
mm9_v1_chr2_+_32442949_32443144	8.23735	GCUGGUG	Y15780|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	BC086784|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	NM_011373|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	BC056451|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
mm9_v1_chr12_+_77425836_77425924	8.08314	GCUGGUG	AK139319|Akap5|238276|A kinase (PRKA) anchor protein 5	NM_001101471|Akap5|238276|A kinase (PRKA) anchor protein 5
mm9_v1_chr4_-_120689813_120689895	8.04671	GCUGGUG	AK152757|Smap2|69780|stromal membrane-associated GTPase-activating protein 2	BC032217|Smap2|69780|stromal membrane-associated GTPase-activating protein 2	AK145042|Smap2|69780|stromal membrane-associated GTPase-activating protein 2	BC031581|Smap2|69780|stromal membrane-associated GTPase-activating protein 2	BC052413|Smap2|69780|stromal membrane-associated GTPase-activating protein 2	NM_133716|Smap2|69780|stromal membrane-associated GTPase-activating protein 2
mm9_v1_chr5_+_108494692_108494781	7.99314	GCUGGUG	AK031409|Mtf2|17765|metal response element binding transcription factor 2	BC024889|Mtf2|17765|metal response element binding transcription factor 2	AK032798|Mtf2|17765|metal response element binding transcription factor 2	AK032819|Mtf2|17765|metal response element binding transcription factor 2	AK137539|Mtf2|17765|metal response element binding transcription factor 2	BC050826|Mtf2|17765|metal response element binding transcription factor 2	AK030752|Mtf2|17765|metal response element binding transcription factor 2	AB050541|Mtf2|17765|metal response element binding transcription factor 2	BC092237|Mtf2|17765|metal response element binding transcription factor 2	NM_013827|Mtf2|17765|metal response element binding transcription factor 2	BC100340|Mtf2|17765|metal response element binding transcription factor 2	BC029076|Mtf2|17765|metal response element binding transcription factor 2
mm9_v1_chr5_+_148768875_148768913	7.93816	GCUGGUG	AK147457|Mtus2|77521|microtubule associated tumor suppressor candidate 2	NM_029920|Mtus2|77521|microtubule associated tumor suppressor candidate 2
mm9_v1_chr9_-_54349409_54349432	7.7702	GCUGGUG	AK170274|Dmxl2|235380|Dmx-like 2	AK048831|Dmxl2|235380|Dmx-like 2	AK053672|Dmxl2|235380|Dmx-like 2	NM_172771|Dmxl2|235380|Dmx-like 2
mm9_v1_chr17_+_44090139_44090183	7.71691	GCUGGUG	BC049096|Rcan2|53901|regulator of calcineurin 2	NM_030598|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr6_-_52859613_52859613	7.65943	GCUGGUG	BC048577|Jazf1|231986|JAZF zinc finger 1	NM_001168277|Jazf1|231986|JAZF zinc finger 1
mm9_v1_chr15_-_103170514_103170552	7.61506	GCUGGUG	AF118566|Zfp385a|29813|zinc finger protein 385A	NM_013866|Zfp385a|29813|zinc finger protein 385A	AK137748|Zfp385a|29813|zinc finger protein 385A
mm9_v1_chrX_+_133200913_133200976	7.3816	GCUGGUG	NM_001029978|Tceal3|594844|transcription elongation factor A (SII)-like 3	AK158996|Tceal3|594844|transcription elongation factor A (SII)-like 3
mm9_v1_chr5_-_103640272_103640352	7.10245	GCUGGUG	AK036275|Mapk10|26414|mitogen-activated protein kinase 10	BC046625|Mapk10|26414|mitogen-activated protein kinase 10	AK163206|Mapk10|26414|mitogen-activated protein kinase 10	AK076990|Mapk10|26414|mitogen-activated protein kinase 10	BC026697|Mapk10|26414|mitogen-activated protein kinase 10	AK082242|Mapk10|26414|mitogen-activated protein kinase 10	NM_001081567|Mapk10|26414|mitogen-activated protein kinase 10	NM_009158|Mapk10|26414|mitogen-activated protein kinase 10
mm9_v1_chr14_-_70205351_70205356	6.87716	GCUGGUG	AK021405|Rhobtb2|246710|Rho-related BTB domain containing 2	NM_153514|Rhobtb2|246710|Rho-related BTB domain containing 2
mm9_v1_chr3_-_107320881_107320937	6.72548	GCUGGUG	AK163113|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	AY155578|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	NM_172271|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17
mm9_v1_chr9_-_75446888_75446974	6.61297	GCUGGUG	AK076562|Tmod2|50876|tropomodulin 2	AK015263|Tmod2|50876|tropomodulin 2	AK017072|Tmod2|50876|tropomodulin 2	BC052227|Tmod2|50876|tropomodulin 2	NM_001038710|Tmod2|50876|tropomodulin 2	AK015719|Tmod2|50876|tropomodulin 2
mm9_v1_chr19_-_12576485_12576634	6.57814	GCUGGUG	NM_172442|Dtx4|207521|deltex 4 homolog (Drosophila)
mm9_v1_chr9_+_32031833_32031859	6.30365	GCUGGUG	NM_177379|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr6_-_90666474_90666531	6.28822	GCUGGUG	NM_001134383|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr7_-_31911884_31911980	6.27008	GCUGGUG	BC009652|Scn1b|20266|sodium channel, voltage-gated, type I, beta	NM_011322|Scn1b|20266|sodium channel, voltage-gated, type I, beta
mm9_v1_chr5_+_28492235_28492251	6.14533	GCUGGUG	AK157766|En2|13799|engrailed 2	NM_010134|En2|13799|engrailed 2
mm9_v1_chr12_-_77811533_77811533	5.96459	GCUGGUG	AK147299|Spnb1|20741|spectrin beta 1	NM_013675|Spnb1|20741|spectrin beta 1
mm9_v1_chr17_+_43938789_43938843	5.92944	GCUGGUG	NM_207649|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr11_+_6963421_6963491	5.88263	GCUGGUG	NM_009622|Adcy1|432530|adenylate cyclase 1
mm9_v1_chr11_+_116780161_116780176	5.79647	GCUGGUG	BC063084|Mgat5b|268510|mannoside acetylglucosaminyltransferase 5, isoenzyme B	BC094604|Mgat5b|268510|mannoside acetylglucosaminyltransferase 5, isoenzyme B	NM_172948|Mgat5b|268510|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm9_v1_chr7_+_98239230_98239295	5.73724	GCUGGUG	NM_011807|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr5_+_14514906_14514924	5.73675	GCUGGUG	NM_001110796|Pclo|26875|piccolo (presynaptic cytomatrix protein)	NM_011995|Pclo|26875|piccolo (presynaptic cytomatrix protein)	Y19185|Pclo|26875|piccolo (presynaptic cytomatrix protein)	Y19186|Pclo|26875|piccolo (presynaptic cytomatrix protein)
mm9_v1_chr3_-_117063793_117063793	5.71699	GCUGGUG	AF541279|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AK046782|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AY266266|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AY266267|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	NM_177664|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm9_v1_chr4_+_59818521_59818521	5.70394	GCUGGUG	AK147437|Snx30|209131|sorting nexin family member 30	NM_172468|Snx30|209131|sorting nexin family member 30
mm9_v1_chr17_-_51965912_51965912	5.69782	GCUGGUG	NM_001163631|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr6_+_79969636_79969636	5.59614	GCUGGUG	NM_178731|Lrrtm4|243499|leucine rich repeat transmembrane neuronal 4
mm9_v1_chr6_-_90760116_90760132	5.58523	GCUGGUG	NM_001134384|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr9_-_75459125_75459169	5.54993	GCUGGUG	AK147581|Tmod2|50876|tropomodulin 2	NM_016711|Tmod2|50876|tropomodulin 2
mm9_v1_chr10_-_85961630_85961659	5.51758	GCUGGUG	AK043854|Syn3|27204|synapsin III	AK087342|Syn3|27204|synapsin III	NM_001164495|Syn3|27204|synapsin III	NM_013722|Syn3|27204|synapsin III
mm9_v1_chrX_+_99044723_99044723	5.47116	GCUGGUG	AK142977|Nhsl2|100042480|NHS-like 2	NM_001163610|Nhsl2|100042480|NHS-like 2
mm9_v1_chr3_-_126701367_126701380	5.33638	GCUGGUG	AK032060|Ank2|109676|ankyrin 2, brain	NM_178655|Ank2|109676|ankyrin 2, brain
mm9_v1_chr13_+_55050729_55050861	5.30124	GCUGGUG	BC058084|Unc5a|107448|unc-5 homolog A (C. elegans)	AJ487852|Unc5a|107448|unc-5 homolog A (C. elegans)	NM_153131|Unc5a|107448|unc-5 homolog A (C. elegans)
mm9_v1_chr11_-_70501586_70501625	5.25845	GCUGGUG	NM_001190376|Camta2|216874|calmodulin binding transcription activator 2	NM_001190378|Camta2|216874|calmodulin binding transcription activator 2	NM_001190379|Camta2|216874|calmodulin binding transcription activator 2	NM_178116|Camta2|216874|calmodulin binding transcription activator 2
mm9_v1_chr14_-_24823370_24823426	5.24762	GCUGGUG	AK142894|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	BC065068|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	NM_010610|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
mm9_v1_chr2_+_125498825_125498913	5.24559	GCUGGUG	AK002559|Eid1|58521|EP300 interacting inhibitor of differentiation 1	NM_025613|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK011293|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK012453|Eid1|58521|EP300 interacting inhibitor of differentiation 1	BC010712|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK077783|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK017543|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK169604|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK005258|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AL357453|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK078402|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK078409|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK148555|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK014440|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AF509968|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK078826|Eid1|58521|EP300 interacting inhibitor of differentiation 1	BC069897|Eid1|58521|EP300 interacting inhibitor of differentiation 1
mm9_v1_chr15_-_98638348_98638375	5.23421	GCUGGUG	AK158894|Ddn|13199|dendrin	NM_001013741|Ddn|13199|dendrin
mm9_v1_chr10_-_42894259_42894340	5.15284	GCUGGUG	BC059851|Sobp|109205|sine oculis-binding protein homolog (Drosophila)	NM_175407|Sobp|109205|sine oculis-binding protein homolog (Drosophila)
mm9_v1_chr5_-_68238654_68238670	5.06928	GCUGGUG	DQ503480|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK151709|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503479|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_001038999|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_009727|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503477|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr12_+_3806955_3807159	5.02516	GCUGGUG	NM_007872|Dnmt3a|13435|DNA methyltransferase 3A	AF503867|Dnmt3a|13435|DNA methyltransferase 3A	AK090132|Dnmt3a|13435|DNA methyltransferase 3A	AK147676|Dnmt3a|13435|DNA methyltransferase 3A	BC007466|Dnmt3a|13435|DNA methyltransferase 3A	AF068625|Dnmt3a|13435|DNA methyltransferase 3A	AK147263|Dnmt3a|13435|DNA methyltransferase 3A	AK147627|Dnmt3a|13435|DNA methyltransferase 3A	AK147642|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr7_+_104728398_104728430	4.96199	GCUGGUG	AK134242|Rsf1|233532|remodeling and spacing factor 1	NM_001081267|Rsf1|233532|remodeling and spacing factor 1	AK138087|Rsf1|233532|remodeling and spacing factor 1	AK146675|Rsf1|233532|remodeling and spacing factor 1	BC085127|Rsf1|233532|remodeling and spacing factor 1	AK146154|Rsf1|233532|remodeling and spacing factor 1	AK032853|Rsf1|233532|remodeling and spacing factor 1
mm9_v1_chr9_-_44128228_44128398	4.95241	GCUGGUG	BC060156|C2cd2l|71764|C2 calcium-dependent domain containing 2-like	AK039220|C2cd2l|71764|C2 calcium-dependent domain containing 2-like	AK153804|C2cd2l|71764|C2 calcium-dependent domain containing 2-like	NM_027909|C2cd2l|71764|C2 calcium-dependent domain containing 2-like	AK004920|C2cd2l|71764|C2 calcium-dependent domain containing 2-like
mm9_v1_chr4_-_133443662_133443718	4.94852	GCUGGUG	BC049076|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1	BC094470|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1	M28489|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1	AK148208|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1	NM_009097|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1
mm9_v1_chr10_+_96079634_96079769	4.90626	GCUGGUG	NM_007569|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK162764|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK149547|Btg1|12226|B-cell translocation gene 1, anti-proliferative	BC018309|Btg1|12226|B-cell translocation gene 1, anti-proliferative	L16846|Btg1|12226|B-cell translocation gene 1, anti-proliferative	BC006834|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK181728|Btg1|12226|B-cell translocation gene 1, anti-proliferative
mm9_v1_chr2_+_157385835_157385932	4.88481	GCUGGUG	AK003004|Nnat|18111|neuronatin	AK077465|Nnat|18111|neuronatin	AK160626|Nnat|18111|neuronatin	NM_010923|Nnat|18111|neuronatin	NM_180960|Nnat|18111|neuronatin	X83569|Nnat|18111|neuronatin	X83570|Nnat|18111|neuronatin	BC036984|Nnat|18111|neuronatin	AB004048|Nnat|18111|neuronatin	X83568|Nnat|18111|neuronatin
mm9_v1_chr7_+_103359146_103359146	4.85387	GCUGGUG	AK147329|Odz4|23966|odd Oz/ten-m homolog 4 (Drosophila)	NM_011858|Odz4|23966|odd Oz/ten-m homolog 4 (Drosophila)
mm9_v1_chr4_-_133843746_133843812	4.85089	GCUGGUG	BC058514|Pdik1l|230809|PDLIM1 interacting kinase 1 like	NM_146156|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK164975|Pdik1l|230809|PDLIM1 interacting kinase 1 like
mm9_v1_chr4_-_34830178_34830200	4.7839	GCUGGUG	AK017652|Zfp292|30046|zinc finger protein 292	AK018067|Zfp292|30046|zinc finger protein 292	NM_013889|Zfp292|30046|zinc finger protein 292	BC036997|Zfp292|30046|zinc finger protein 292
mm9_v1_chr7_+_106683983_106683997	4.74231	GCUGGUG	AK147508|Arrb1|109689|arrestin, beta 1	NM_177231|Arrb1|109689|arrestin, beta 1	NM_178220|Arrb1|109689|arrestin, beta 1
mm9_v1_chr17_-_51972514_51972614	4.7316	GCUGGUG	BC011132|Satb1|20230|special AT-rich sequence binding protein 1	NM_001163632|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr1_+_168184269_168184413	4.71564	GCUGGUG	NM_001164528|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024494|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024495|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024496|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024497|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024498|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024499|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024500|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024501|Ildr2|100039795|immunoglobulin-like domain containing receptor 2
mm9_v1_chr4_-_133843139_133843188	4.62924	GCUGGUG	AK053750|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK157013|Pdik1l|230809|PDLIM1 interacting kinase 1 like	BC027088|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141566|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK139413|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141823|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK162350|Pdik1l|230809|PDLIM1 interacting kinase 1 like	NM_001163794|Pdik1l|230809|PDLIM1 interacting kinase 1 like
mm9_v1_chrX_+_157205944_157206093	4.60317	GCUGGUG	BC046422|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)	NM_011302|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)	AF084561|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)	AF073780|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)	AJ011381|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)
mm9_v1_chr13_+_44826121_44826271	4.59735	GCUGGUG	D31967|Jarid2|16468|jumonji, AT rich interactive domain 2	BC052444|Jarid2|16468|jumonji, AT rich interactive domain 2	BC060695|Jarid2|16468|jumonji, AT rich interactive domain 2	NM_021878|Jarid2|16468|jumonji, AT rich interactive domain 2
mm9_v1_chr17_-_51951378_51951378	4.55484	GCUGGUG	AK158518|Satb1|20230|special AT-rich sequence binding protein 1	NM_001163630|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr6_+_120314116_120314182	4.54344	GCUGGUG	AK041568|Kdm5a|214899|lysine (K)-specific demethylase 5A	NM_145997|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK166055|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK159079|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK144877|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK139619|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK046187|Kdm5a|214899|lysine (K)-specific demethylase 5A	BC011506|Kdm5a|214899|lysine (K)-specific demethylase 5A
mm9_v1_chr8_+_85387234_85387370	4.4572	GCUGGUG	AK032722|Rnf150|330812|ring finger protein 150	AK041412|Rnf150|330812|ring finger protein 150	NM_177378|Rnf150|330812|ring finger protein 150	AK220374|Rnf150|330812|ring finger protein 150
mm9_v1_chrX_+_165233030_165233030	4.4506	GCUGGUG	AK164501|Arhgap6|11856|Rho GTPase activating protein 6	AK171677|Arhgap6|11856|Rho GTPase activating protein 6	NM_009707|Arhgap6|11856|Rho GTPase activating protein 6
mm9_v1_chr10_-_61802889_61803289	4.42695	GCUGGUG	AK167468|Hk1|15275|hexokinase 1	AK143630|Hk1|15275|hexokinase 1	NM_001146100|Hk1|15275|hexokinase 1	BC072628|Hk1|15275|hexokinase 1
mm9_v1_chr4_+_128561383_128561383	4.4078	GCUGGUG	BC049095|Trim62|67525|tripartite motif-containing 62	NM_178110|Trim62|67525|tripartite motif-containing 62
mm9_v1_chr2_-_121176719_121176752	4.36364	GCUGGUG	AK122264|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	AK083140|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	NM_178795|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	BC065138|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	AF502585|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1
mm9_v1_chr8_+_90723069_90723153	4.33728	GCUGGUG	AK077553|Papd5|214627|PAP associated domain containing 5	NM_001164497|Papd5|214627|PAP associated domain containing 5	NM_001164498|Papd5|214627|PAP associated domain containing 5	NM_001164499|Papd5|214627|PAP associated domain containing 5	BC059053|Papd5|214627|PAP associated domain containing 5	BC144796|Papd5|214627|PAP associated domain containing 5	BC144797|Papd5|214627|PAP associated domain containing 5	BC145737|Papd5|214627|PAP associated domain containing 5
mm9_v1_chr15_-_84818368_84818512	4.28857	GCUGGUG	AK149782|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene	NM_001033273|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene	AK170532|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene
mm9_v1_chr5_+_22252006_22252042	4.26849	GCUGGUG	NM_001081231|Lhfpl3|269629|lipoma HMGIC fusion partner-like 3	NM_029990|Lhfpl3|269629|lipoma HMGIC fusion partner-like 3	AK033906|Lhfpl3|269629|lipoma HMGIC fusion partner-like 3	AK020916|Lhfpl3|269629|lipoma HMGIC fusion partner-like 3
mm9_v1_chr14_-_13178341_13178378	4.24758	GCUGGUG	AK019996|Fezf2|54713|Fez family zinc finger 2	BC055718|Fezf2|54713|Fez family zinc finger 2	NM_080433|Fezf2|54713|Fez family zinc finger 2
mm9_v1_chr2_-_130468507_130468540	4.12548	GCUGGUG	AK161711|Prosapip1|241638|ProSAPiP1 protein	AK148251|Prosapip1|241638|ProSAPiP1 protein	NM_197945|Prosapip1|241638|ProSAPiP1 protein
mm9_v1_chr2_+_143371807_143372226	4.12183	GCUGGUG	AK158598|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AK133620|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	NM_008792|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	BC057348|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AK158493|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AK161585|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	BC052013|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AK039783|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	M55669|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AF483512|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AF483513|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2
mm9_v1_chr9_+_47338431_47338446	4.11801	GCUGGUG	AB052293|Cadm1|54725|cell adhesion molecule 1	AB377192|Cadm1|54725|cell adhesion molecule 1	AK053839|Cadm1|54725|cell adhesion molecule 1	NM_001025600|Cadm1|54725|cell adhesion molecule 1	NM_018770|Cadm1|54725|cell adhesion molecule 1	NM_207675|Cadm1|54725|cell adhesion molecule 1	NM_207676|Cadm1|54725|cell adhesion molecule 1	AF539424|Cadm1|54725|cell adhesion molecule 1	BC095986|Cadm1|54725|cell adhesion molecule 1	BC069937|Cadm1|54725|cell adhesion molecule 1	BC057125|Cadm1|54725|cell adhesion molecule 1
mm9_v1_chr13_+_118009379_118009441	4.08862	GCUGGUG	NM_010330|Emb|13723|embigin	AK138271|Emb|13723|embigin	AK079570|Emb|13723|embigin
mm9_v1_chr8_-_70342105_70342226	4.08533	GCUGGUG	BC131913|Psd3|234353|pleckstrin and Sec7 domain containing 3	BC145641|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK031477|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK147606|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_027626|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr1_+_194014677_194014800	3.95312	GCUGGUG	AK140193|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_001038607|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_010600|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	U04294|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109012|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109013|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm9_v1_chr15_-_75397243_75397344	3.93543	GCUGGUG	AF127091|Ly6h|23934|lymphocyte antigen 6 complex, locus H	BC028758|Ly6h|23934|lymphocyte antigen 6 complex, locus H	NM_001135688|Ly6h|23934|lymphocyte antigen 6 complex, locus H	AK021002|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr14_-_94287950_94288026	3.92926	GCUGGUG	NM_001081377|Pcdh9|211712|protocadherin 9	BC157952|Pcdh9|211712|protocadherin 9	BC172098|Pcdh9|211712|protocadherin 9	BC158114|Pcdh9|211712|protocadherin 9	BC158117|Pcdh9|211712|protocadherin 9
mm9_v1_chr4_-_132768403_132768450	3.90545	GCUGGUG	AK140464|Gpr3|14748|G-protein coupled receptor 3	AK158917|Gpr3|14748|G-protein coupled receptor 3	AK140302|Gpr3|14748|G-protein coupled receptor 3	NM_008154|Gpr3|14748|G-protein coupled receptor 3
mm9_v1_chr15_-_75397601_75397641	3.8801	GCUGGUG	NM_011837|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr12_-_86311718_86311851	3.81635	GCUGGUG	BC057351|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	BC079590|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK147878|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK154529|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK147491|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	NM_178065|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene
mm9_v1_chr10_-_79017835_79017849	3.81034	GCUGGUG	BC067013|Mier2|70427|mesoderm induction early response 1, family member 2	NM_027422|Mier2|70427|mesoderm induction early response 1, family member 2	AK154672|Mier2|70427|mesoderm induction early response 1, family member 2
mm9_v1_chr2_+_5872500_5872551	3.7785	GCUGGUG	BC049622|Upf2|326622|UPF2 regulator of nonsense transcripts homolog (yeast)	NM_001081132|Upf2|326622|UPF2 regulator of nonsense transcripts homolog (yeast)	BC138358|Upf2|326622|UPF2 regulator of nonsense transcripts homolog (yeast)	BC138359|Upf2|326622|UPF2 regulator of nonsense transcripts homolog (yeast)
mm9_v1_chr2_-_39046224_39046253	3.74777	GCUGGUG	BC132485|Scai|320271|suppressor of cancer cell invasion	BC144986|Scai|320271|suppressor of cancer cell invasion	BC144987|Scai|320271|suppressor of cancer cell invasion	BC144989|Scai|320271|suppressor of cancer cell invasion	AK044772|Scai|320271|suppressor of cancer cell invasion	AK082408|Scai|320271|suppressor of cancer cell invasion	AK083280|Scai|320271|suppressor of cancer cell invasion	NM_178778|Scai|320271|suppressor of cancer cell invasion	AK163712|Scai|320271|suppressor of cancer cell invasion
mm9_v1_chrX_-_34529439_34529513	3.7068	GCUGGUG	AB023622|Sept6|56526|septin 6	AK088614|Sept6|56526|septin 6	AK088406|Sept6|56526|septin 6	AK172894|Sept6|56526|septin 6	BC010489|Sept6|56526|septin 6	AK012858|Sept6|56526|septin 6	AK160884|Sept6|56526|septin 6	AK083302|Sept6|56526|septin 6	AK162755|Sept6|56526|septin 6	AK048455|Sept6|56526|septin 6	NM_001177323|Sept6|56526|septin 6
mm9_v1_chr17_-_51971946_51971971	3.70539	GCUGGUG	AK088563|Satb1|20230|special AT-rich sequence binding protein 1	AK134040|Satb1|20230|special AT-rich sequence binding protein 1	U05252|Satb1|20230|special AT-rich sequence binding protein 1	AK037740|Satb1|20230|special AT-rich sequence binding protein 1	NM_009122|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr9_+_108728650_108728650	3.68542	GCUGGUG	AF427498|Celsr3|107934|cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)	NM_080437|Celsr3|107934|cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)
mm9_v1_chr10_-_61842599_61842655	3.6493	GCUGGUG	EU430531|Hk1|15275|hexokinase 1	EU430532|Hk1|15275|hexokinase 1	EU430533|Hk1|15275|hexokinase 1	L16949|Hk1|15275|hexokinase 1	NM_010438|Hk1|15275|hexokinase 1
mm9_v1_chr10_-_9620837_9620892	3.61437	GCUGGUG	NM_001081344|Stxbp5|78808|syntaxin binding protein 5 (tomosyn)
mm9_v1_chr6_-_53018566_53018625	3.55937	GCUGGUG	AK043767|Jazf1|231986|JAZF zinc finger 1	AK050474|Jazf1|231986|JAZF zinc finger 1	NM_173406|Jazf1|231986|JAZF zinc finger 1
mm9_v1_chr11_-_69227176_69227176	3.55392	GCUGGUG	NM_001017426|Kdm6b|216850|KDM1 lysine (K)-specific demethylase 6B
mm9_v1_chr2_+_92061718_92061757	3.55002	GCUGGUG	NM_001109690|Phf21a|192285|PHD finger protein 21A	AK137085|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr15_-_75397030_75397077	3.53888	GCUGGUG	AK034884|Ly6h|23934|lymphocyte antigen 6 complex, locus H	NM_001135689|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr2_+_121782185_121782265	3.489	GCUGGUG	AK033382|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	NM_212450|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK169248|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK044805|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK053513|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	BC066219|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK030085|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK041422|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK049463|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK160431|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	BC052660|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm9_v1_chr8_-_61390372_61390423	3.4306	GCUGGUG	BC111102|Galntl6|270049|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6	AK080614|Galntl6|270049|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6	NM_175032|Galntl6|270049|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
mm9_v1_chr8_+_86423968_86424035	3.41755	GCUGGUG	NM_181039|Lphn1|330814|latrophilin 1	AK147455|Lphn1|330814|latrophilin 1
mm9_v1_chr12_+_87762593_87762593	3.41253	GCUGGUG	AK044339|Esrrb|26380|estrogen related receptor, beta	NM_011934|Esrrb|26380|estrogen related receptor, beta
mm9_v1_chr14_+_35633312_35633351	3.40781	GCUGGUG	NM_008166|Grid1|14803|glutamate receptor, ionotropic, delta 1	AK138279|Grid1|14803|glutamate receptor, ionotropic, delta 1	D10171|Grid1|14803|glutamate receptor, ionotropic, delta 1
mm9_v1_chr5_+_130007103_130007146	3.39287	GCUGGUG	NM_172276|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	AK140369|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	AK031872|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	AK088182|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	AK170748|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	BC057314|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	BC034336|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	BC034665|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	BC013466|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	BC036315|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)
mm9_v1_chr17_-_49703661_49703689	3.36121	GCUGGUG	BC050043|Daam2|76441|dishevelled associated activator of morphogenesis 2	NM_001008231|Daam2|76441|dishevelled associated activator of morphogenesis 2	AY426536|Daam2|76441|dishevelled associated activator of morphogenesis 2
mm9_v1_chr12_+_87582805_87582876	3.344	GCUGGUG	BC048169|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	AK031712|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	AK006185|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	BC058256|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	NM_027405|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	AK147916|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	BC050782|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	AK129299|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene
mm9_v1_chr7_+_142729505_142729604	3.34035	GCUGGUG	AK004602|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	NM_011212|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	U35368|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	BC024631|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	AK132455|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	U62387|Ptpre|19267|protein tyrosine phosphatase, receptor type, E
mm9_v1_chrX_+_33868347_33868594	3.29978	GCUGGUG	AK167341|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK016522|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK147751|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	NM_028894|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	BC120688|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	BC120690|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK030866|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3
mm9_v1_chr2_+_92025639_92025639	3.25821	GCUGGUG	AK037174|Phf21a|192285|PHD finger protein 21A	NM_001109691|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr15_-_96472600_96472827	3.20631	GCUGGUG	AK040250|Slc38a1|105727|solute carrier family 38, member 1	AK029189|Slc38a1|105727|solute carrier family 38, member 1	BC066815|Slc38a1|105727|solute carrier family 38, member 1	BC030378|Slc38a1|105727|solute carrier family 38, member 1	AK049173|Slc38a1|105727|solute carrier family 38, member 1	AK050914|Slc38a1|105727|solute carrier family 38, member 1	AK082683|Slc38a1|105727|solute carrier family 38, member 1	NM_001166456|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr2_+_24909898_24909973	3.20425	GCUGGUG	NM_001039386|Nelf|56876|nasal embryonic LHRH factor	NM_001039387|Nelf|56876|nasal embryonic LHRH factor	NM_001177654|Nelf|56876|nasal embryonic LHRH factor	NM_001177655|Nelf|56876|nasal embryonic LHRH factor	NM_020276|Nelf|56876|nasal embryonic LHRH factor	AK004986|Nelf|56876|nasal embryonic LHRH factor	AK041478|Nelf|56876|nasal embryonic LHRH factor	AK158803|Nelf|56876|nasal embryonic LHRH factor	AF266508|Nelf|56876|nasal embryonic LHRH factor	AK019560|Nelf|56876|nasal embryonic LHRH factor	BC006642|Nelf|56876|nasal embryonic LHRH factor	AK053402|Nelf|56876|nasal embryonic LHRH factor	AK165300|Nelf|56876|nasal embryonic LHRH factor
mm9_v1_chr6_-_48036561_48036593	3.12914	GCUGGUG	AK156312|Zfp746|69228|zinc finger protein 746	NM_001163475|Zfp746|69228|zinc finger protein 746
mm9_v1_chr3_-_55987612_55987634	3.10688	GCUGGUG	NM_030595|Nbea|26422|neurobeachin	Y18276|Nbea|26422|neurobeachin
mm9_v1_chr11_+_77306825_77306918	3.06108	GCUGGUG	BC079870|Git1|216963|G protein-coupled receptor kinase-interactor 1	NM_001004144|Git1|216963|G protein-coupled receptor kinase-interactor 1
mm9_v1_chr5_-_121641282_121641449	3.04558	GCUGGUG	D84372|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	BC057398|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	BC028513|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK011468|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK147354|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	BC059278|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK159501|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK159587|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	NM_001109992|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	NM_011202|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11
mm9_v1_chr14_+_28051224_28051247	3.04511	GCUGGUG	AK004600|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	NM_027871|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	AK036737|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	AK036749|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3
mm9_v1_chr4_+_49072327_49072465	3.02812	GCUGGUG	AK053451|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AK087514|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AY345342|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	NM_178756|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	BC096762|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AK047614|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AK043762|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene
mm9_v1_chr11_+_93747419_93747532	3.00785	GCUGGUG	AK153919|Mbtd1|103537|mbt domain containing 1	BC064014|Mbtd1|103537|mbt domain containing 1	BC062907|Mbtd1|103537|mbt domain containing 1	NM_134012|Mbtd1|103537|mbt domain containing 1
mm9_v1_chr8_-_122364444_122364503	3.00081	GCUGGUG	NM_028071|Cotl1|72042|coactosin-like 1 (Dictyostelium)
mm9_v1_chr15_+_100592177_100592343	2.9883	GCUGGUG	AK034237|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	NM_021530|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK083945|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK050563|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK039404|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	BC030388|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AF224508|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK173014|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8
mm9_v1_chr8_-_112692071_112692144	2.9733	GCUGGUG	BC017646|Calb2|12308|calbindin 2	NM_007586|Calb2|12308|calbindin 2	AK032171|Calb2|12308|calbindin 2
mm9_v1_chr12_+_87702066_87702202	2.86543	GCUGGUG	AK052256|Esrrb|26380|estrogen related receptor, beta	NM_001159500|Esrrb|26380|estrogen related receptor, beta	BC132595|Esrrb|26380|estrogen related receptor, beta	BC132597|Esrrb|26380|estrogen related receptor, beta
mm9_v1_chr5_-_121227617_121227718	2.77355	GCUGGUG	AK158392|Oas3|246727|2'-5' oligoadenylate synthetase 3	AF453830|Oas3|246727|2'-5' oligoadenylate synthetase 3	BC141055|Oas3|246727|2'-5' oligoadenylate synthetase 3	AB067534|Oas3|246727|2'-5' oligoadenylate synthetase 3	NM_145226|Oas3|246727|2'-5' oligoadenylate synthetase 3
mm9_v1_chr12_-_47919695_47919761	2.76617	GCUGGUG	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr6_-_122287014_122287032	2.745	GCUGGUG	U63386|Phc1|13619|polyhomeotic-like 1 (Drosophila)	NM_001042623|Phc1|13619|polyhomeotic-like 1 (Drosophila)	NM_007905|Phc1|13619|polyhomeotic-like 1 (Drosophila)
mm9_v1_chr9_+_31923720_31923720	2.72775	GCUGGUG	NM_001195632|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr11_+_69579376_69579461	2.71536	GCUGGUG	AK163593|Zbtb4|75580|zinc finger and BTB domain containing 4	NM_029348|Zbtb4|75580|zinc finger and BTB domain containing 4	AK147212|Zbtb4|75580|zinc finger and BTB domain containing 4
mm9_v1_chr18_+_78135191_78135231	2.69253	GCUGGUG	NM_001195633|5430411K18Rik|100502841|RIKEN cDNA 5430411K18 gene
mm9_v1_chr3_+_28162135_28162218	2.57053	GCUGGUG	BC050866|Tnik|665113|TRAF2 and NCK interacting kinase	BC050868|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163007|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163008|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163009|Tnik|665113|TRAF2 and NCK interacting kinase	NM_026910|Tnik|665113|TRAF2 and NCK interacting kinase	AK041777|Tnik|665113|TRAF2 and NCK interacting kinase	AK133568|Tnik|665113|TRAF2 and NCK interacting kinase	AK039113|Tnik|665113|TRAF2 and NCK interacting kinase
mm9_v1_chr2_+_14976877_14977152	2.56611	GCUGGUG	AK042200|Arl5b|75869|ADP-ribosylation factor-like 5B	AK040422|Arl5b|75869|ADP-ribosylation factor-like 5B	BC066810|Arl5b|75869|ADP-ribosylation factor-like 5B	AK041237|Arl5b|75869|ADP-ribosylation factor-like 5B	AK053731|Arl5b|75869|ADP-ribosylation factor-like 5B	NM_029466|Arl5b|75869|ADP-ribosylation factor-like 5B	AK164341|Arl5b|75869|ADP-ribosylation factor-like 5B	AK016359|Arl5b|75869|ADP-ribosylation factor-like 5B
mm9_v1_chr2_+_163899842_163899948	2.5108	GCUGGUG	BC054521|Stk4|58231|serine/threonine kinase 4	AF271360|Stk4|58231|serine/threonine kinase 4	AK028838|Stk4|58231|serine/threonine kinase 4	NM_021420|Stk4|58231|serine/threonine kinase 4
mm9_v1_chr5_+_73872293_73872293	2.47759	GCUGGUG	AK076991|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_001190734|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr6_-_113145321_113145377	2.44416	GCUGGUG	AK220449|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	BC085130|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	AK046437|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	NM_177763|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4
mm9_v1_chr2_+_4322020_4322021	2.40291	GCUGGUG	BC082808|Frmd4a|209630|FERM domain containing 4A	NM_001177843|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr7_-_125386862_125387193	2.37142	GCUGGUG	AK220328|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	AK041264|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	AK047829|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	AK157798|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	AK049391|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	NM_001031814|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
mm9_v1_chr18_-_46685557_46685627	2.34346	GCUGGUG	AK129440|Fem1c|240263|fem-1 homolog c (C.elegans)	AK049336|Fem1c|240263|fem-1 homolog c (C.elegans)	AK028330|Fem1c|240263|fem-1 homolog c (C.elegans)	NM_173423|Fem1c|240263|fem-1 homolog c (C.elegans)
mm9_v1_chr1_+_75371871_75371871	2.33365	GCUGGUG	AF215896|Speg|11790|SPEG complex locus	NM_007463|Speg|11790|SPEG complex locus
mm9_v1_chr2_+_90744878_90745017	2.30391	GCUGGUG	BC025103|Kbtbd4|67136|kelch repeat and BTB (POZ) domain containing 4	AK010998|Kbtbd4|67136|kelch repeat and BTB (POZ) domain containing 4	NM_025991|Kbtbd4|67136|kelch repeat and BTB (POZ) domain containing 4	AK014373|Kbtbd4|67136|kelch repeat and BTB (POZ) domain containing 4
mm9_v1_chr5_+_73882264_73882364	2.28944	GCUGGUG	NM_001190733|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_178896|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	AK033559|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137627|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137628|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC144794|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC060213|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC108346|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr8_-_70434808_70434844	2.27814	GCUGGUG	BC052365|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK161498|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_030263|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr8_+_24168730_24168785	2.25232	GCUGGUG	AK147483|Ank1|11733|ankyrin 1, erythroid	NM_031158|Ank1|11733|ankyrin 1, erythroid	X69063|Ank1|11733|ankyrin 1, erythroid	AK147597|Ank1|11733|ankyrin 1, erythroid
mm9_v1_chr13_+_43880475_43880582	2.22954	GCUGGUG	NM_009856|Cd83|12522|CD83 antigen	AK075888|Cd83|12522|CD83 antigen	AK139410|Cd83|12522|CD83 antigen	AK154862|Cd83|12522|CD83 antigen	AK156386|Cd83|12522|CD83 antigen	AK171716|Cd83|12522|CD83 antigen	AK172122|Cd83|12522|CD83 antigen	AK172449|Cd83|12522|CD83 antigen	AK172515|Cd83|12522|CD83 antigen	AK172466|Cd83|12522|CD83 antigen	BC072615|Cd83|12522|CD83 antigen	AK172396|Cd83|12522|CD83 antigen	AJ245551|Cd83|12522|CD83 antigen	BC107344|Cd83|12522|CD83 antigen	BC107345|Cd83|12522|CD83 antigen	AF001036|Cd83|12522|CD83 antigen
mm9_v1_chrX_+_148667763_148667814	2.17953	GCUGGUG	AK150152|Kdm5c|20591|lysine (K)-specific demethylase 5C	AK155651|Kdm5c|20591|lysine (K)-specific demethylase 5C	NM_013668|Kdm5c|20591|lysine (K)-specific demethylase 5C	AK011577|Kdm5c|20591|lysine (K)-specific demethylase 5C	AK155279|Kdm5c|20591|lysine (K)-specific demethylase 5C	AK155427|Kdm5c|20591|lysine (K)-specific demethylase 5C	AK158340|Kdm5c|20591|lysine (K)-specific demethylase 5C	AK008105|Kdm5c|20591|lysine (K)-specific demethylase 5C	BC038940|Kdm5c|20591|lysine (K)-specific demethylase 5C	AK081369|Kdm5c|20591|lysine (K)-specific demethylase 5C	BC026777|Kdm5c|20591|lysine (K)-specific demethylase 5C	AF127245|Kdm5c|20591|lysine (K)-specific demethylase 5C	BC043096|Kdm5c|20591|lysine (K)-specific demethylase 5C	BC054550|Kdm5c|20591|lysine (K)-specific demethylase 5C
mm9_v1_chr14_-_70132309_70132386	2.11995	GCUGGUG	BC024115|Chmp7|105513|CHMP family, member 7	BC033365|Chmp7|105513|CHMP family, member 7	NM_134078|Chmp7|105513|CHMP family, member 7
mm9_v1_chr11_+_102622745_102622752	2.11061	GCUGGUG	AK157926|Adam11|11488|a disintegrin and metallopeptidase domain 11	NM_001110778|Adam11|11488|a disintegrin and metallopeptidase domain 11	NM_009613|Adam11|11488|a disintegrin and metallopeptidase domain 11
mm9_v1_chr9_+_40076800_40077017	2.10459	GCUGGUG	NM_001083917|Scn3b|235281|sodium channel, voltage-gated, type III, beta	NM_153522|Scn3b|235281|sodium channel, voltage-gated, type III, beta	NM_178227|Scn3b|235281|sodium channel, voltage-gated, type III, beta	BC058636|Scn3b|235281|sodium channel, voltage-gated, type III, beta	AK049286|Scn3b|235281|sodium channel, voltage-gated, type III, beta	BC058083|Scn3b|235281|sodium channel, voltage-gated, type III, beta	AK051805|Scn3b|235281|sodium channel, voltage-gated, type III, beta	AK173115|Scn3b|235281|sodium channel, voltage-gated, type III, beta	AK049747|Scn3b|235281|sodium channel, voltage-gated, type III, beta
mm9_v1_chr15_-_78548542_78548542	2.09706	GCUGGUG	BC094219|Elfn2|207393|leucine rich repeat and fibronectin type III, extracellular 2	NM_183141|Elfn2|207393|leucine rich repeat and fibronectin type III, extracellular 2
mm9_v1_chr17_-_25707599_25707638	2.08837	GCUGGUG	BC043704|Sox8|20681|SRY-box containing gene 8	BC085619|Sox8|20681|SRY-box containing gene 8	AK032459|Sox8|20681|SRY-box containing gene 8	AK033460|Sox8|20681|SRY-box containing gene 8	AK034231|Sox8|20681|SRY-box containing gene 8	AK046473|Sox8|20681|SRY-box containing gene 8	AK053716|Sox8|20681|SRY-box containing gene 8	AK145294|Sox8|20681|SRY-box containing gene 8	NM_011447|Sox8|20681|SRY-box containing gene 8
mm9_v1_chr2_+_4073908_4073934	2.07494	GCUGGUG	NM_172475|Frmd4a|209630|FERM domain containing 4A	AK034706|Frmd4a|209630|FERM domain containing 4A	BC058672|Frmd4a|209630|FERM domain containing 4A	AK163887|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr2_+_173563060_173563229	2.0471	GCUGGUG	BC048231|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	NM_019806|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	BC057123|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK050632|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK081908|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AF115504|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK160925|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK172080|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chr1_+_193149772_193149878	2.02987	GCUGGUG	AK049641|Tmem206|66950|transmembrane protein 206	AK031270|Tmem206|66950|transmembrane protein 206	AK012107|Tmem206|66950|transmembrane protein 206	AK009526|Tmem206|66950|transmembrane protein 206	AK044482|Tmem206|66950|transmembrane protein 206	NM_025864|Tmem206|66950|transmembrane protein 206	BC027151|Tmem206|66950|transmembrane protein 206
mm9_v1_chr1_+_129765349_129765386	2.01527	GCUGGUG	NM_178690|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK172881|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK035603|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK076399|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK080432|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK134604|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK164523|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK170768|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	BC046297|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK076244|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1
mm9_v1_chr5_-_135164426_135164540	2.00478	GCUGGUG	BC063768|Limk1|16885|LIM-domain containing, protein kinase	AK141813|Limk1|16885|LIM-domain containing, protein kinase	AK164484|Limk1|16885|LIM-domain containing, protein kinase	U15159|Limk1|16885|LIM-domain containing, protein kinase	NM_010717|Limk1|16885|LIM-domain containing, protein kinase	U14166|Limk1|16885|LIM-domain containing, protein kinase
mm9_v1_chr2_+_4480799_4480871	1.97084	GCUGGUG	AK077327|Frmd4a|209630|FERM domain containing 4A	NM_001177844|Frmd4a|209630|FERM domain containing 4A	AK148414|Frmd4a|209630|FERM domain containing 4A	AK029073|Frmd4a|209630|FERM domain containing 4A	AK171532|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr2_-_38142866_38142913	1.95801	GCUGGUG	BC027786|Dennd1a|227801|DENN/MADD domain containing 1A	AK137530|Dennd1a|227801|DENN/MADD domain containing 1A	BC023016|Dennd1a|227801|DENN/MADD domain containing 1A	NM_146122|Dennd1a|227801|DENN/MADD domain containing 1A
mm9_v1_chr11_-_71949346_71949391	1.95277	GCUGGUG	AK147444|Pitpnm3|327958|PITPNM family member 3	NM_001024927|Pitpnm3|327958|PITPNM family member 3	NM_001081641|Pitpnm3|327958|PITPNM family member 3
mm9_v1_chr17_+_27993426_27993458	1.91629	GCUGGUG	AK089790|Uhrf1bp1|224648|UHRF1 (ICBP90) binding protein 1	AK144200|Uhrf1bp1|224648|UHRF1 (ICBP90) binding protein 1	AK220293|Uhrf1bp1|224648|UHRF1 (ICBP90) binding protein 1	NM_001080769|Uhrf1bp1|224648|UHRF1 (ICBP90) binding protein 1
mm9_v1_chr14_+_31528034_31528081	1.91503	GCUGGUG	NM_019460|Sfmbt1|54650|Scm-like with four mbt domains 1	BC066188|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr1_-_136131981_136132033	1.90629	GCUGGUG	NM_001008533|Adora1|11539|adenosine A1 receptor	AK038774|Adora1|11539|adenosine A1 receptor	NM_001039510|Adora1|11539|adenosine A1 receptor	AK134532|Adora1|11539|adenosine A1 receptor
mm9_v1_chr5_+_122659745_122659913	1.87689	GCUGGUG	NM_001042489|Hvcn1|74096|hydrogen voltage-gated channel 1	AK154880|Hvcn1|74096|hydrogen voltage-gated channel 1	AK170422|Hvcn1|74096|hydrogen voltage-gated channel 1	AK155123|Hvcn1|74096|hydrogen voltage-gated channel 1	BC021548|Hvcn1|74096|hydrogen voltage-gated channel 1
mm9_v1_chr12_-_4484059_4484074	1.86216	GCUGGUG	NM_010881|Ncoa1|17977|nuclear receptor coactivator 1
mm9_v1_chr1_-_90598670_90598781	1.84452	GCUGGUG	AK080335|Arl4c|320982|ADP-ribosylation factor-like 4C	AK080380|Arl4c|320982|ADP-ribosylation factor-like 4C	AK080743|Arl4c|320982|ADP-ribosylation factor-like 4C	BC055769|Arl4c|320982|ADP-ribosylation factor-like 4C	NM_177305|Arl4c|320982|ADP-ribosylation factor-like 4C
mm9_v1_chr17_+_15190022_15190022	1.81915	GCUGGUG	AK160176|2210404J11Rik|381062|RIKEN cDNA 2210404J11 gene	NM_001034891|2210404J11Rik|381062|RIKEN cDNA 2210404J11 gene
mm9_v1_chr4_+_130348406_130348575	1.78072	GCUGGUG	AK129153|Sdc3|20970|syndecan 3	NM_011520|Sdc3|20970|syndecan 3	AK155127|Sdc3|20970|syndecan 3	BC054795|Sdc3|20970|syndecan 3	BC062093|Sdc3|20970|syndecan 3	U52826|Sdc3|20970|syndecan 3
mm9_v1_chr2_+_154262114_154262265	1.7613	GCUGGUG	AK148027|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_009823|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_172860|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK040403|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	DQ213025|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	BC064679|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK049206|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)
mm9_v1_chr8_-_70498472_70498472	1.76042	GCUGGUG	AB220685|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_177698|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr5_+_122660225_122660306	1.75835	GCUGGUG	AK186675|Hvcn1|74096|hydrogen voltage-gated channel 1	AK002854|Hvcn1|74096|hydrogen voltage-gated channel 1	NM_028752|Hvcn1|74096|hydrogen voltage-gated channel 1
mm9_v1_chr14_+_52730577_52730615	1.7416	GCUGGUG	BC081545|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1	NM_001168515|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1	NM_023879|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1	AK020800|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1	AK044753|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1	AY008297|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1	AY914560|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1	BC086692|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1	BC016092|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1
mm9_v1_chr1_-_88567078_88567149	1.73499	GCUGGUG	BC111834|Nppc|18159|natriuretic peptide type C	AK036176|Nppc|18159|natriuretic peptide type C	NM_010933|Nppc|18159|natriuretic peptide type C	AK020093|Nppc|18159|natriuretic peptide type C
mm9_v1_chr19_-_10944196_10944284	1.73201	GCUGGUG	BC006896|Tmem132a|98170|transmembrane protein 132A	AK173207|Tmem132a|98170|transmembrane protein 132A	AK036651|Tmem132a|98170|transmembrane protein 132A	AK032956|Tmem132a|98170|transmembrane protein 132A	AK048556|Tmem132a|98170|transmembrane protein 132A	AK164646|Tmem132a|98170|transmembrane protein 132A	NM_133804|Tmem132a|98170|transmembrane protein 132A
mm9_v1_chr7_+_94732677_94732677	1.73128	GCUGGUG	NM_001081414|Grm5|108071|glutamate receptor, metabotropic 5	NM_001143834|Grm5|108071|glutamate receptor, metabotropic 5
mm9_v1_chr11_+_77908168_77908192	1.70782	GCUGGUG	AK085728|BC017647|216971|cDNA sequence BC017647	NM_145430|BC017647|216971|cDNA sequence BC017647	AK047860|BC017647|216971|cDNA sequence BC017647	AK140562|BC017647|216971|cDNA sequence BC017647
mm9_v1_chr14_-_71029960_71029960	1.7038	GCUGGUG	BC016897|Epb4.9|13829|erythrocyte protein band 4.9	NM_013514|Epb4.9|13829|erythrocyte protein band 4.9
mm9_v1_chr8_+_24085309_24085353	1.70371	GCUGGUG	AK158131|Ank1|11733|ankyrin 1, erythroid	AK147278|Ank1|11733|ankyrin 1, erythroid	NM_001110783|Ank1|11733|ankyrin 1, erythroid
mm9_v1_chr12_+_75008853_75009062	1.68053	GCUGGUG	NM_010431|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK034087|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK150367|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK138944|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK017853|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	BC026139|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AF003695|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr1_+_75382155_75382196	1.66521	GCUGGUG	AK147475|Speg|11790|SPEG complex locus	NM_001085370|Speg|11790|SPEG complex locus
mm9_v1_chr13_-_9764376_9764487	1.66485	GCUGGUG	BC022945|Zmynd11|66505|zinc finger, MYND domain containing 11	AK077732|Zmynd11|66505|zinc finger, MYND domain containing 11	NM_144516|Zmynd11|66505|zinc finger, MYND domain containing 11
mm9_v1_chr12_-_14158843_14158897	1.65674	GCUGGUG	BC005488|Fam84a|105005|family with sequence similarity 84, member A	NM_029007|Fam84a|105005|family with sequence similarity 84, member A	AK014625|Fam84a|105005|family with sequence similarity 84, member A
mm9_v1_chr5_-_51945054_51945159	1.65074	GCUGGUG	BC066868|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AB061324|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AF049330|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK143753|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK138668|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	NM_008904|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm9_v1_chr3_-_50247306_50247534	1.64004	GCUGGUG	AK162233|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK170568|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141402|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141408|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AB022345|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766236|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766237|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK165599|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089202|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037742|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK076322|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK163168|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171252|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171327|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089283|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171192|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037490|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	NM_011990|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm9_v1_chrX_+_165474542_165474656	1.60635	GCUGGUG	AK047827|Arhgap6|11856|Rho GTPase activating protein 6	NM_178754|Arhgap6|11856|Rho GTPase activating protein 6	AK077996|Arhgap6|11856|Rho GTPase activating protein 6	AK048507|Arhgap6|11856|Rho GTPase activating protein 6	AK048162|Arhgap6|11856|Rho GTPase activating protein 6	AK170575|Arhgap6|11856|Rho GTPase activating protein 6	AK079651|Arhgap6|11856|Rho GTPase activating protein 6	AK171337|Arhgap6|11856|Rho GTPase activating protein 6
mm9_v1_chr2_-_157392026_157392132	1.59554	GCUGGUG	AB037891|Blcap|53619|bladder cancer associated protein homolog (human)	BC026935|Blcap|53619|bladder cancer associated protein homolog (human)	BC083339|Blcap|53619|bladder cancer associated protein homolog (human)	AK038884|Blcap|53619|bladder cancer associated protein homolog (human)	AK011673|Blcap|53619|bladder cancer associated protein homolog (human)	AK170338|Blcap|53619|bladder cancer associated protein homolog (human)	AK018127|Blcap|53619|bladder cancer associated protein homolog (human)	NM_016916|Blcap|53619|bladder cancer associated protein homolog (human)
mm9_v1_chr5_-_25004598_25004626	1.59129	GCUGGUG	AK044828|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3	NM_001081383|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3	AK087368|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3
mm9_v1_chr5_+_127722177_127722219	1.5878	GCUGGUG	AK028289|Tmem132c|208213|transmembrane protein 132C	AK013435|Tmem132c|208213|transmembrane protein 132C	NM_175432|Tmem132c|208213|transmembrane protein 132C	AK028541|Tmem132c|208213|transmembrane protein 132C	AK157823|Tmem132c|208213|transmembrane protein 132C
mm9_v1_chr2_-_130665832_130665882	1.58622	GCUGGUG	BC052447|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	NM_029432|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK015050|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK158367|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK089462|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK143611|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK045996|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene
mm9_v1_chr6_-_54516326_54516404	1.57947	GCUGGUG	BC023889|Scrn1|69938|secernin 1	AK089968|Scrn1|69938|secernin 1	AK129084|Scrn1|69938|secernin 1	AK082953|Scrn1|69938|secernin 1	NM_027268|Scrn1|69938|secernin 1	AK145904|Scrn1|69938|secernin 1	AK050481|Scrn1|69938|secernin 1	AK012765|Scrn1|69938|secernin 1	AK032573|Scrn1|69938|secernin 1
mm9_v1_chr19_+_10463540_10463619	1.57711	GCUGGUG	NM_018801|Syt7|54525|synaptotagmin VII	NM_173067|Syt7|54525|synaptotagmin VII	NM_173068|Syt7|54525|synaptotagmin VII	AK080850|Syt7|54525|synaptotagmin VII
mm9_v1_chr10_+_66590005_66590005	1.56578	GCUGGUG	NM_207221|Jmjd1c|108829|jumonji domain containing 1C
mm9_v1_chr17_+_47767638_47767638	1.55913	GCUGGUG	BC060712|Usp49|224836|ubiquitin specific peptidase 49	NM_198421|Usp49|224836|ubiquitin specific peptidase 49
mm9_v1_chr4_+_6118247_6118251	1.53917	GCUGGUG	AK028268|Ubxn2b|68053|UBX domain protein 2B	AK018273|Ubxn2b|68053|UBX domain protein 2B	AK032332|Ubxn2b|68053|UBX domain protein 2B	BC076632|Ubxn2b|68053|UBX domain protein 2B	NM_026534|Ubxn2b|68053|UBX domain protein 2B
mm9_v1_chr11_-_74403603_74403659	1.53651	GCUGGUG	NM_001015046|Rap1gap2|380711|RAP1 GTPase activating protein 2
mm9_v1_chr3_+_96025040_96025063	1.5291	GCUGGUG	AK090189|Hist2h2be|319190|histone cluster 2, H2be	AK143398|Hist2h2be|319190|histone cluster 2, H2be	AK162494|Hist2h2be|319190|histone cluster 2, H2be	AK167546|Hist2h2be|319190|histone cluster 2, H2be	AK170749|Hist2h2be|319190|histone cluster 2, H2be	BC058562|Hist2h2be|319190|histone cluster 2, H2be	AK078533|Hist2h2be|319190|histone cluster 2, H2be	NM_178214|Hist2h2be|319190|histone cluster 2, H2be	AK168767|Hist2h2be|319190|histone cluster 2, H2be	BC047137|Hist2h2be|319190|histone cluster 2, H2be
mm9_v1_chr8_-_97220127_97220176	1.51891	GCUGGUG	AK018198|Pllp|67801|plasma membrane proteolipid	AK032540|Pllp|67801|plasma membrane proteolipid	BC024534|Pllp|67801|plasma membrane proteolipid	AK002477|Pllp|67801|plasma membrane proteolipid	NM_026385|Pllp|67801|plasma membrane proteolipid
mm9_v1_chr8_+_77517536_77517607	1.48988	GCUGGUG	AK156670|Hmgxb4|70823|HMG box domain containing 4	AK014640|Hmgxb4|70823|HMG box domain containing 4	BC048188|Hmgxb4|70823|HMG box domain containing 4	BC049800|Hmgxb4|70823|HMG box domain containing 4	NM_178017|Hmgxb4|70823|HMG box domain containing 4	BC023721|Hmgxb4|70823|HMG box domain containing 4
mm9_v1_chr6_-_118089060_118089172	1.458	GCUGGUG	AK028045|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2	AK145992|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2	AK160867|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2	AK019496|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2	NM_030165|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2
mm9_v1_chr11_+_68702054_68702054	1.43891	GCUGGUG	AK028294|Rnf222|320040|ring finger protein 222	NM_177060|Rnf222|320040|ring finger protein 222
mm9_v1_chrX_-_34529689_34529693	1.43332	GCUGGUG	NM_001177324|Sept6|56526|septin 6	NM_019942|Sept6|56526|septin 6
mm9_v1_chr6_-_71390592_71390638	1.38407	GCUGGUG	AK164384|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)	NM_024288|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
mm9_v1_chr17_-_47748405_47748448	1.37824	GCUGGUG	AK083033|Bysl|53414|bystin-like	AK051704|Bysl|53414|bystin-like	AK049195|Bysl|53414|bystin-like	AK143027|Bysl|53414|bystin-like	NM_016859|Bysl|53414|bystin-like
mm9_v1_chr3_-_51129908_51129958	1.35285	GCUGGUG	AF256216|Elf2|69257|E74-like factor 2	AF256217|Elf2|69257|E74-like factor 2	NM_023502|Elf2|69257|E74-like factor 2	BC092057|Elf2|69257|E74-like factor 2
mm9_v1_chr4_-_136512727_136512761	1.33254	GCUGGUG	NM_007939|Epha8|13842|Eph receptor A8	U72207|Epha8|13842|Eph receptor A8
mm9_v1_chr7_-_36000343_36000392	1.33046	GCUGGUG	AK149337|Lrp3|435965|low density lipoprotein receptor-related protein 3	NM_001024707|Lrp3|435965|low density lipoprotein receptor-related protein 3
mm9_v1_chr18_+_13130739_13130831	1.32308	GCUGGUG	D87973|Impact|16210|imprinted and ancient	NM_008378|Impact|16210|imprinted and ancient	AK138136|Impact|16210|imprinted and ancient	BC020524|Impact|16210|imprinted and ancient
mm9_v1_chrX_-_110299092_110299131	1.31187	GCUGGUG	BC047461|Chm|12662|choroidermia	AK035956|Chm|12662|choroidermia	AK141830|Chm|12662|choroidermia	AF218084|Chm|12662|choroidermia	NM_018818|Chm|12662|choroidermia	AK021238|Chm|12662|choroidermia
mm9_v1_chr7_-_4796261_4796301	1.30347	GCUGGUG	NM_172737|Shisa7|232813|shisa homolog 7 (Xenopus laevis)
mm9_v1_chr14_-_37862119_37862149	1.29737	GCUGGUG	AF076930|Rgr|57811|retinal G protein coupled receptor	BC086689|Rgr|57811|retinal G protein coupled receptor	BC119055|Rgr|57811|retinal G protein coupled receptor	BC082611|Rgr|57811|retinal G protein coupled receptor	AK044450|Rgr|57811|retinal G protein coupled receptor	AK044649|Rgr|57811|retinal G protein coupled receptor	AK149272|Rgr|57811|retinal G protein coupled receptor	NM_021340|Rgr|57811|retinal G protein coupled receptor
mm9_v1_chr16_+_18127741_18127800	1.29067	GCUGGUG	BC058381|Rtn4r|65079|reticulon 4 receptor	AF283462|Rtn4r|65079|reticulon 4 receptor	NM_022982|Rtn4r|65079|reticulon 4 receptor	BC052317|Rtn4r|65079|reticulon 4 receptor
mm9_v1_chr9_+_106073255_106073259	1.28354	GCUGGUG	AK037620|Wdr82|77305|WD repeat domain containing 82	AK035109|Wdr82|77305|WD repeat domain containing 82	AK149692|Wdr82|77305|WD repeat domain containing 82	AK159240|Wdr82|77305|WD repeat domain containing 82	AK172474|Wdr82|77305|WD repeat domain containing 82	NM_029896|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chrX_+_6356431_6356431	1.28096	GCUGGUG	BC075627|Dgkk|331374|diacylglycerol kinase kappa	NM_177914|Dgkk|331374|diacylglycerol kinase kappa
mm9_v1_chr6_-_86619001_86619180	1.27464	GCUGGUG	CT010233|Mxd1|17119|MAX dimerization protein 1	L38926|Mxd1|17119|MAX dimerization protein 1	X83106|Mxd1|17119|MAX dimerization protein 1	BC034860|Mxd1|17119|MAX dimerization protein 1	U20614|Mxd1|17119|MAX dimerization protein 1	AK036504|Mxd1|17119|MAX dimerization protein 1	AK151882|Mxd1|17119|MAX dimerization protein 1	AK153303|Mxd1|17119|MAX dimerization protein 1	AK151114|Mxd1|17119|MAX dimerization protein 1	AK151014|Mxd1|17119|MAX dimerization protein 1	AK151305|Mxd1|17119|MAX dimerization protein 1	NM_010751|Mxd1|17119|MAX dimerization protein 1
mm9_v1_chr1_+_6204729_6204756	1.27131	GCUGGUG	AB050017|Rb1cc1|12421|RB1-inducible coiled-coil 1	AB070619|Rb1cc1|12421|RB1-inducible coiled-coil 1	NM_009826|Rb1cc1|12421|RB1-inducible coiled-coil 1	AK020027|Rb1cc1|12421|RB1-inducible coiled-coil 1
mm9_v1_chr2_-_33226980_33226997	1.2602	GCUGGUG	AK129123|Ralgps1|241308|Ral GEF with PH domain and SH3 binding motif 1	AK017939|Ralgps1|241308|Ral GEF with PH domain and SH3 binding motif 1	AK076767|Ralgps1|241308|Ral GEF with PH domain and SH3 binding motif 1	NM_175211|Ralgps1|241308|Ral GEF with PH domain and SH3 binding motif 1
mm9_v1_chr19_+_3767420_3767525	1.22424	GCUGGUG	AK083227|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	NM_001167884|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	NM_001167885|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	NM_001167886|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	NM_001167887|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	NM_001167888|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	NM_001167889|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	NM_144871|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	AK087267|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)
mm9_v1_chr2_-_152223710_152223930	1.2172	GCUGGUG	BC067019|Sox12|20667|SRY-box containing gene 12	NM_011438|Sox12|20667|SRY-box containing gene 12
mm9_v1_chr9_+_113840051_113840064	1.21012	GCUGGUG	AK143282|Ubp1|22221|upstream binding protein 1	NM_001083319|Ubp1|22221|upstream binding protein 1	NM_013699|Ubp1|22221|upstream binding protein 1
mm9_v1_chr7_-_35174519_35174695	1.19952	GCUGGUG	BC031521|Lsm14a|67070|LSM14 homolog A (SCD6, S. cerevisiae)	NM_025948|Lsm14a|67070|LSM14 homolog A (SCD6, S. cerevisiae)
mm9_v1_chr17_+_15178514_15178597	1.19827	GCUGGUG	BC150877|2210404J11Rik|381062|RIKEN cDNA 2210404J11 gene	NM_001039552|2210404J11Rik|381062|RIKEN cDNA 2210404J11 gene	AK013428|Gm3435|100041621|predicted gene 3435	AK078282|Gm3435|100041621|predicted gene 3435	AK042420|9030025P20Rik|100041574|RIKEN cDNA 9030025P20 gene
mm9_v1_chr8_-_36558514_36558598	1.19285	GCUGGUG	AK165026|Eri1|67276|exoribonuclease 1	BC046412|Eri1|67276|exoribonuclease 1	AK172005|Eri1|67276|exoribonuclease 1	AK144223|Eri1|67276|exoribonuclease 1	AK014041|Eri1|67276|exoribonuclease 1	AK014410|Eri1|67276|exoribonuclease 1	NM_026067|Eri1|67276|exoribonuclease 1
mm9_v1_chr9_+_56924152_56924295	1.18915	GCUGGUG	NM_001110350|Sin3a|20466|transcriptional regulator, SIN3A (yeast)	NM_011378|Sin3a|20466|transcriptional regulator, SIN3A (yeast)	U22394|Sin3a|20466|transcriptional regulator, SIN3A (yeast)	AK220292|Sin3a|20466|transcriptional regulator, SIN3A (yeast)	BC052716|Sin3a|20466|transcriptional regulator, SIN3A (yeast)
mm9_v1_chr7_+_19511230_19511244	1.18856	GCUGGUG	NM_001029877|Nova2|384569|neuro-oncological ventral antigen 2
mm9_v1_chr11_-_115885714_115885820	1.18808	GCUGGUG	BC092300|H3f3b|15081|H3 histone, family 3B	X13605|H3f3b|15081|H3 histone, family 3B	BC021768|H3f3b|15081|H3 histone, family 3B	BC092043|H3f3b|15081|H3 histone, family 3B	BC002052|H3f3b|15081|H3 histone, family 3B	AK169620|H3f3b|15081|H3 histone, family 3B	BC037730|H3f3b|15081|H3 histone, family 3B	AK167828|H3f3b|15081|H3 histone, family 3B	AK153239|H3f3b|15081|H3 histone, family 3B	AK159615|H3f3b|15081|H3 histone, family 3B	AK166605|H3f3b|15081|H3 histone, family 3B	AK168931|H3f3b|15081|H3 histone, family 3B	AK169042|H3f3b|15081|H3 histone, family 3B	AK044933|H3f3b|15081|H3 histone, family 3B	AK151451|H3f3b|15081|H3 histone, family 3B	AK153189|H3f3b|15081|H3 histone, family 3B	AK151274|H3f3b|15081|H3 histone, family 3B	AK151336|H3f3b|15081|H3 histone, family 3B	AK152026|H3f3b|15081|H3 histone, family 3B	AK153294|H3f3b|15081|H3 histone, family 3B	AK153371|H3f3b|15081|H3 histone, family 3B	AK159338|H3f3b|15081|H3 histone, family 3B	AK169226|H3f3b|15081|H3 histone, family 3B	AK146070|H3f3b|15081|H3 histone, family 3B	AK151658|H3f3b|15081|H3 histone, family 3B	AK151661|H3f3b|15081|H3 histone, family 3B	AK151869|H3f3b|15081|H3 histone, family 3B	AK152453|H3f3b|15081|H3 histone, family 3B	AK152455|H3f3b|15081|H3 histone, family 3B	AK152911|H3f3b|15081|H3 histone, family 3B	AK161675|H3f3b|15081|H3 histone, family 3B	AK162426|H3f3b|15081|H3 histone, family 3B	AK168698|H3f3b|15081|H3 histone, family 3B	AK169039|H3f3b|15081|H3 histone, family 3B	AK163244|H3f3b|15081|H3 histone, family 3B	AK002928|H3f3b|15081|H3 histone, family 3B	AK011431|H3f3b|15081|H3 histone, family 3B	AK159807|H3f3b|15081|H3 histone, family 3B	AK159850|H3f3b|15081|H3 histone, family 3B	AK135839|H3f3b|15081|H3 histone, family 3B	AK151222|H3f3b|15081|H3 histone, family 3B	AK152623|H3f3b|15081|H3 histone, family 3B	AK153530|H3f3b|15081|H3 histone, family 3B	NM_008211|H3f3b|15081|H3 histone, family 3B
mm9_v1_chr12_-_32398730_32398790	1.1758	GCUGGUG	AK140577|Gpr22|73010|G protein-coupled receptor 22	AK034194|Gpr22|73010|G protein-coupled receptor 22	AK013755|Gpr22|73010|G protein-coupled receptor 22	AK048077|Gpr22|73010|G protein-coupled receptor 22	AK141569|Gpr22|73010|G protein-coupled receptor 22	BC089509|Gpr22|73010|G protein-coupled receptor 22	NM_175191|Gpr22|73010|G protein-coupled receptor 22
mm9_v1_chr2_+_166631011_166631132	1.16814	GCUGGUG	AK087574|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	NM_001085495|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK087920|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	BC158012|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK153722|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm9_v1_chr5_+_36100508_36100541	1.1582	GCUGGUG	AK154494|Ablim2|231148|actin-binding LIM protein 2	NM_001177696|Ablim2|231148|actin-binding LIM protein 2	NM_001177697|Ablim2|231148|actin-binding LIM protein 2	NM_001177698|Ablim2|231148|actin-binding LIM protein 2	NM_001177699|Ablim2|231148|actin-binding LIM protein 2	NM_001177700|Ablim2|231148|actin-binding LIM protein 2	NM_177678|Ablim2|231148|actin-binding LIM protein 2
mm9_v1_chr19_+_36629128_36629172	1.14533	GCUGGUG	AK142777|Hectd2|226098|HECT domain containing 2	NM_001163471|Hectd2|226098|HECT domain containing 2	NM_172637|Hectd2|226098|HECT domain containing 2	BC137671|Hectd2|226098|HECT domain containing 2	BC144815|Hectd2|226098|HECT domain containing 2	AK041629|Hectd2|226098|HECT domain containing 2	AK043646|Hectd2|226098|HECT domain containing 2	AK079321|Hectd2|226098|HECT domain containing 2
mm9_v1_chr14_+_27399015_27399092	1.11673	GCUGGUG	AK054295|Fam116a|211922|family with sequence similarity 116, member A	NM_001134465|Fam116a|211922|family with sequence similarity 116, member A	NM_145969|Fam116a|211922|family with sequence similarity 116, member A	AK132219|Fam116a|211922|family with sequence similarity 116, member A	AK131163|Fam116a|211922|family with sequence similarity 116, member A	BC025603|Fam116a|211922|family with sequence similarity 116, member A	AK161908|Fam116a|211922|family with sequence similarity 116, member A	AK054197|Fam116a|211922|family with sequence similarity 116, member A
mm9_v1_chr12_+_79327630_79327650	1.09229	GCUGGUG	AK144569|Gphn|268566|gephyrin	NM_145965|Gphn|268566|gephyrin	NM_172952|Gphn|268566|gephyrin
mm9_v1_chr9_-_20896404_20896431	1.08186	GCUGGUG	BC108392|Raver1|71766|ribonucleoprotein, PTB-binding 1	BC058271|Raver1|71766|ribonucleoprotein, PTB-binding 1	NM_027911|Raver1|71766|ribonucleoprotein, PTB-binding 1
mm9_v1_chr5_+_148242018_148242155	1.07685	GCUGGUG	NM_028291|Pan3|72587|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm9_v1_chr2_-_120178819_120178881	1.07309	GCUGGUG	BC007479|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281050|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281051|Vps39|269338|vacuolar protein sorting 39 (yeast)	AB028844|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK141424|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK038824|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK042253|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK154103|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK170831|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK171008|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK159889|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK160109|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK084743|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_147153|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_178851|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK140041|Vps39|269338|vacuolar protein sorting 39 (yeast)
mm9_v1_chrX_-_101396356_101396482	1.05814	GCUGGUG	AK220439|C77370|245555|expressed sequence C77370	DQ975302|C77370|245555|expressed sequence C77370	DQ975303|C77370|245555|expressed sequence C77370	NM_001077354|C77370|245555|expressed sequence C77370	AK038635|C77370|245555|expressed sequence C77370
mm9_v1_chr2_-_33743465_33743465	1.01978	GCUGGUG	BC059907|Fam125b|72543|family with sequence similarity 125, member B	NM_175184|Fam125b|72543|family with sequence similarity 125, member B
mm9_v1_chr14_-_100548982_100549014	0.994304	GCUGGUG	AB221575|Klf12|16597|Kruppel-like factor 12	Y14295|Klf12|16597|Kruppel-like factor 12	BC067408|Klf12|16597|Kruppel-like factor 12	NM_010636|Klf12|16597|Kruppel-like factor 12
mm9_v1_chr2_+_129024496_129024619	0.992195	GCUGGUG	NM_001159593|Slc20a1|20515|solute carrier family 20, member 1	NM_015747|Slc20a1|20515|solute carrier family 20, member 1	AK084159|Slc20a1|20515|solute carrier family 20, member 1	AK155506|Slc20a1|20515|solute carrier family 20, member 1	AK035898|Slc20a1|20515|solute carrier family 20, member 1	AK089184|Slc20a1|20515|solute carrier family 20, member 1	AK003059|Slc20a1|20515|solute carrier family 20, member 1	BC015085|Slc20a1|20515|solute carrier family 20, member 1
mm9_v1_chr8_-_13288115_13288156	0.99209	GCUGGUG	BC052676|Dcun1d2|102323|DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	AK040130|Dcun1d2|102323|DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	NM_001024504|Dcun1d2|102323|DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	NM_001042649|Dcun1d2|102323|DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	NM_001042650|Dcun1d2|102323|DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	NM_001042651|Dcun1d2|102323|DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	AK154550|Dcun1d2|102323|DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)
mm9_v1_chr19_-_3575695_3575758	0.991888	GCUGGUG	AK129392|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK088526|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	BC008529|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK035236|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK015925|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK018652|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_001164159|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_028999|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_029456|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3
mm9_v1_chr1_-_133423902_133423973	0.966153	GCUGGUG	AK143649|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2	NM_001081011|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2
mm9_v1_chr3_+_89577436_89577810	0.95888	GCUGGUG	NM_027315|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AY112699|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AY945937|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AK146707|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr9_+_57385317_57385465	0.946136	GCUGGUG	AK028365|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene	NM_001166364|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene	NM_175273|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene	BC111883|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene	BC112403|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene
mm9_v1_chr8_+_125778094_125778211	0.938394	GCUGGUG	AK133363|Zfp276|57247|zinc finger protein (C2H2 type) 276	NM_020497|Zfp276|57247|zinc finger protein (C2H2 type) 276	AK028939|Zfp276|57247|zinc finger protein (C2H2 type) 276	AK043258|Zfp276|57247|zinc finger protein (C2H2 type) 276	BC066056|Zfp276|57247|zinc finger protein (C2H2 type) 276
mm9_v1_chr7_+_140829357_140829384	0.929404	GCUGGUG	NM_178115|2700050L05Rik|214764|RIKEN cDNA 2700050L05 gene	AK052387|2700050L05Rik|214764|RIKEN cDNA 2700050L05 gene
mm9_v1_chr1_+_107560433_107560513	0.910948	GCUGGUG	AK035724|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	NM_029349|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	NM_173187|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	AK148005|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC051567|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC117950|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC117949|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	AK009628|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene
mm9_v1_chr2_-_160934743_160934810	0.908725	GCUGGUG	BC145629|Chd6|71389|chromodomain helicase DNA binding protein 6	BC150806|Chd6|71389|chromodomain helicase DNA binding protein 6	AK018129|Chd6|71389|chromodomain helicase DNA binding protein 6	AK040495|Chd6|71389|chromodomain helicase DNA binding protein 6	AK142177|Chd6|71389|chromodomain helicase DNA binding protein 6	AK086807|Chd6|71389|chromodomain helicase DNA binding protein 6	AK162083|Chd6|71389|chromodomain helicase DNA binding protein 6	NM_173368|Chd6|71389|chromodomain helicase DNA binding protein 6	AK080892|Chd6|71389|chromodomain helicase DNA binding protein 6	AK080927|Chd6|71389|chromodomain helicase DNA binding protein 6
mm9_v1_chrX_-_154036606_154036649	0.893662	GCUGGUG	AK148325|Mbtps2|270669|membrane-bound transcription factor peptidase, site 2	NM_172307|Mbtps2|270669|membrane-bound transcription factor peptidase, site 2
mm9_v1_chr7_-_17509228_17509415	0.87899	GCUGGUG	AK169630|Calm3|12315|calmodulin 3	BC050926|Calm3|12315|calmodulin 3	M19380|Calm3|12315|calmodulin 3	AK165568|Calm3|12315|calmodulin 3	AK153179|Calm3|12315|calmodulin 3	AK152754|Calm3|12315|calmodulin 3	AK151610|Calm3|12315|calmodulin 3	NM_007590|Calm3|12315|calmodulin 3
mm9_v1_chr11_+_67399999_67400271	0.871618	GCUGGUG	AK031455|Gas7|14457|growth arrest specific 7	NM_001109657|Gas7|14457|growth arrest specific 7	AK154463|Gas7|14457|growth arrest specific 7	AK017394|Gas7|14457|growth arrest specific 7
mm9_v1_chr11_-_69648350_69648356	0.867599	GCUGGUG	AK173159|Nlgn2|216856|neuroligin 2	NM_198862|Nlgn2|216856|neuroligin 2
mm9_v1_chr19_+_5689130_5689130	0.851636	GCUGGUG	BC095963|Map3k11|26403|mitogen-activated protein kinase kinase kinase 11	NM_022012|Map3k11|26403|mitogen-activated protein kinase kinase kinase 11
mm9_v1_chr7_+_19705202_19705237	0.837145	GCUGGUG	NM_175530|Fbxo46|243867|F-box protein 46	AK030147|Fbxo46|243867|F-box protein 46	BC049813|Fbxo46|243867|F-box protein 46
mm9_v1_chr2_+_156439426_156439464	0.825652	GCUGGUG	NM_146128|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr12_-_101758964_101759037	0.803364	GCUGGUG	AK046740|Ttc7b|104718|tetratricopeptide repeat domain 7B	AK148363|Ttc7b|104718|tetratricopeptide repeat domain 7B	NM_001033213|Ttc7b|104718|tetratricopeptide repeat domain 7B
mm9_v1_chr8_+_23970006_23970020	0.784278	GCUGGUG	AK028058|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK082463|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	NM_001081149|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK039615|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK036885|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK054322|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK132474|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK143408|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3
mm9_v1_chr17_+_31814873_31814975	0.780692	GCUGGUG	AK143463|Cryaa|12954|crystallin, alpha A	BC085170|Cryaa|12954|crystallin, alpha A	BC085172|Cryaa|12954|crystallin, alpha A	NM_013501|Cryaa|12954|crystallin, alpha A	AJ310308|Cryaa|12954|crystallin, alpha A	BC092385|Cryaa|12954|crystallin, alpha A	J00376|Cryaa|12954|crystallin, alpha A
mm9_v1_chr4_+_33069972_33070146	0.776324	GCUGGUG	NM_027491|Rragd|52187|Ras-related GTP binding D	AF490406|Rragd|52187|Ras-related GTP binding D
mm9_v1_chr18_+_69504145_69504185	0.763318	GCUGGUG	AK051958|Tcf4|21413|transcription factor 4	NM_013685|Tcf4|21413|transcription factor 4	U16322|Tcf4|21413|transcription factor 4
mm9_v1_chr17_+_69788665_69788722	0.758825	GCUGGUG	NM_001145192|A330050F15Rik|320722|RIKEN cDNA A330050F15 gene	AK039494|A330050F15Rik|320722|RIKEN cDNA A330050F15 gene
mm9_v1_chr7_+_4088622_4088685	0.753068	GCUGGUG	AK170629|Leng8|232798|leukocyte receptor cluster (LRC) member 8	AK034310|Leng8|232798|leukocyte receptor cluster (LRC) member 8	NM_172736|Leng8|232798|leukocyte receptor cluster (LRC) member 8	AK085304|Leng8|232798|leukocyte receptor cluster (LRC) member 8	AK158293|Leng8|232798|leukocyte receptor cluster (LRC) member 8	BC066768|Leng8|232798|leukocyte receptor cluster (LRC) member 8	BC042658|Leng8|232798|leukocyte receptor cluster (LRC) member 8	BC041775|Leng8|232798|leukocyte receptor cluster (LRC) member 8
mm9_v1_chr10_-_62801726_62801784	0.752726	GCUGGUG	AK140330|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	BC152314|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159590|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AY377984|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AF214646|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_019812|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AK144203|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159589|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)
mm9_v1_chr18_+_42435006_42435038	0.741251	GCUGGUG	NM_172626|Rbm27|225432|RNA binding motif protein 27	AY461716|Rbm27|225432|RNA binding motif protein 27
mm9_v1_chr6_-_72548335_72548408	0.716762	GCUGGUG	AK049155|Elmod3|232089|ELMO/CED-12 domain containing 3	NM_144917|Elmod3|232089|ELMO/CED-12 domain containing 3	AK084010|Elmod3|232089|ELMO/CED-12 domain containing 3	AK164974|Elmod3|232089|ELMO/CED-12 domain containing 3
mm9_v1_chr1_-_154725297_154725297	0.707566	GCUGGUG	AK129101|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_001160257|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr14_+_31528352_31528352	0.698151	GCUGGUG	AK160573|Sfmbt1|54650|Scm-like with four mbt domains 1	NM_001166531|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr8_-_8690519_8690552	0.691439	GCUGGUG	BC046971|Arglu1|234023|arginine and glutamate rich 1	NM_176849|Arglu1|234023|arginine and glutamate rich 1
mm9_v1_chr10_-_20444654_20444883	0.685347	GCUGGUG	AF190639|Pde7b|29863|phosphodiesterase 7B	BC130267|Pde7b|29863|phosphodiesterase 7B	AK020137|Pde7b|29863|phosphodiesterase 7B	AK040876|Pde7b|29863|phosphodiesterase 7B	NM_013875|Pde7b|29863|phosphodiesterase 7B	AK035385|Pde7b|29863|phosphodiesterase 7B
mm9_v1_chr9_+_46091073_46091104	0.668341	GCUGGUG	AK038126|Bud13|215051|BUD13 homolog (yeast)	AK051047|Bud13|215051|BUD13 homolog (yeast)	AK077744|Bud13|215051|BUD13 homolog (yeast)	NM_146000|Bud13|215051|BUD13 homolog (yeast)	AK037134|Bud13|215051|BUD13 homolog (yeast)	BC025490|Bud13|215051|BUD13 homolog (yeast)
mm9_v1_chr5_-_72895429_72895446	0.663534	GCUGGUG	BC138339|Corin|53419|corin	BC138340|Corin|53419|corin	BC145243|Corin|53419|corin	AB013874|Corin|53419|corin	NM_016869|Corin|53419|corin
mm9_v1_chr18_-_10029925_10030160	0.643602	GCUGGUG	AB034633|Usp14|59025|ubiquitin specific peptidase 14	BC050197|Usp14|59025|ubiquitin specific peptidase 14	AK045909|Usp14|59025|ubiquitin specific peptidase 14	BC005571|Usp14|59025|ubiquitin specific peptidase 14	AK029977|Usp14|59025|ubiquitin specific peptidase 14	AK160215|Usp14|59025|ubiquitin specific peptidase 14	AK011322|Usp14|59025|ubiquitin specific peptidase 14	AK172477|Usp14|59025|ubiquitin specific peptidase 14	AK170933|Usp14|59025|ubiquitin specific peptidase 14	NM_001038589|Usp14|59025|ubiquitin specific peptidase 14	NM_021522|Usp14|59025|ubiquitin specific peptidase 14
mm9_v1_chr2_+_156546694_156546736	0.636807	GCUGGUG	NM_001042488|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr5_-_72895711_72895778	0.622152	GCUGGUG	BC093485|Corin|53419|corin	NM_001122756|Corin|53419|corin
mm9_v1_chr6_-_32538191_32538191	0.60612	GCUGGUG	AB073228|Plxna4|243743|plexin A4	NM_175750|Plxna4|243743|plexin A4
mm9_v1_chr16_-_44139087_44139164	0.602716	GCUGGUG	AK140873|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	BC038392|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK150742|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK166857|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK149833|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK153403|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK154869|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK160792|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK170721|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	NM_007508|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A
mm9_v1_chr5_+_134575561_134575653	0.597134	GCUGGUG	AJ296173|Gatsl2|80909|GATS protein-like 2	AK039122|Gatsl2|80909|GATS protein-like 2	BC094613|Gatsl2|80909|GATS protein-like 2	NM_030719|Gatsl2|80909|GATS protein-like 2	AK052217|Gatsl2|80909|GATS protein-like 2
mm9_v1_chr4_-_63094355_63094355	0.596193	GCUGGUG	AY739121|Whrn|73750|whirlin	AY739122|Whrn|73750|whirlin	NM_001008797|Whrn|73750|whirlin	NM_001008798|Whrn|73750|whirlin
mm9_v1_chr2_+_10294062_10294208	0.593575	GCUGGUG	AK040600|Sfmbt2|353282|Scm-like with four mbt domains 2	NM_001198809|Sfmbt2|353282|Scm-like with four mbt domains 2	NM_177386|Sfmbt2|353282|Scm-like with four mbt domains 2	AK052339|Sfmbt2|353282|Scm-like with four mbt domains 2	BC115510|Sfmbt2|353282|Scm-like with four mbt domains 2	BC115511|Sfmbt2|353282|Scm-like with four mbt domains 2	AK147651|Sfmbt2|353282|Scm-like with four mbt domains 2
mm9_v1_chr11_-_6100453_6100453	0.584711	GCUGGUG	NM_173748|Nudcd3|209586|NudC domain containing 3
mm9_v1_chr2_+_156547014_156547227	0.576974	GCUGGUG	NM_001042487|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	BC085475|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr11_+_67346499_67346579	0.565596	GCUGGUG	NM_008088|Gas7|14457|growth arrest specific 7	BC120528|Gas7|14457|growth arrest specific 7	BC120530|Gas7|14457|growth arrest specific 7
mm9_v1_chrX_-_131343759_131343759	0.560231	GCUGGUG	AK172960|Armcx2|67416|armadillo repeat containing, X-linked 2	NM_001166397|Armcx2|67416|armadillo repeat containing, X-linked 2	NM_001166398|Armcx2|67416|armadillo repeat containing, X-linked 2	NM_026139|Armcx2|67416|armadillo repeat containing, X-linked 2
mm9_v1_chr3_+_88425294_88425344	0.547358	GCUGGUG	NM_001198912|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	NM_001198913|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr15_+_66409094_66409201	0.547184	GCUGGUG	AK047044|Phf20l1|239510|PHD finger protein 20-like 1	AK032638|Phf20l1|239510|PHD finger protein 20-like 1	NM_001081409|Phf20l1|239510|PHD finger protein 20-like 1	BC082777|Phf20l1|239510|PHD finger protein 20-like 1	BC052212|Phf20l1|239510|PHD finger protein 20-like 1	BC061492|Phf20l1|239510|PHD finger protein 20-like 1
mm9_v1_chr15_-_78893275_78893359	0.51637	GCUGGUG	BC014743|Ankrd54|223690|ankyrin repeat domain 54	NM_144849|Ankrd54|223690|ankyrin repeat domain 54	DQ884878|Ankrd54|223690|ankyrin repeat domain 54	AK133785|Ankrd54|223690|ankyrin repeat domain 54	AK050440|Ankrd54|223690|ankyrin repeat domain 54	AK143625|Ankrd54|223690|ankyrin repeat domain 54	AK084500|Ankrd54|223690|ankyrin repeat domain 54
mm9_v1_chr1_-_156573049_156573160	0.497541	GCUGGUG	NM_009782|Cacna1e|12290|calcium channel, voltage-dependent, R type, alpha 1E subunit	BC150750|Cacna1e|12290|calcium channel, voltage-dependent, R type, alpha 1E subunit
mm9_v1_chr18_+_50139080_50139182	0.48641	GCUGGUG	NM_001177759|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	NM_001177760|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK170322|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK163339|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8
mm9_v1_chr4_-_63156984_63157036	0.48297	GCUGGUG	AY739114|Whrn|73750|whirlin	AY739115|Whrn|73750|whirlin	AY739116|Whrn|73750|whirlin	AY739117|Whrn|73750|whirlin	AY739118|Whrn|73750|whirlin	AY739119|Whrn|73750|whirlin	AY739120|Whrn|73750|whirlin	NM_001008791|Whrn|73750|whirlin	NM_001008792|Whrn|73750|whirlin	NM_001008793|Whrn|73750|whirlin	NM_001008794|Whrn|73750|whirlin	NM_001008795|Whrn|73750|whirlin	NM_001008796|Whrn|73750|whirlin	NM_028640|Whrn|73750|whirlin	AK157955|Whrn|73750|whirlin
mm9_v1_chr7_-_135381486_135381579	0.477337	GCUGGUG	AK033604|9130023H24Rik|100043133|RIKEN cDNA 9130023H24 gene	AK084086|9130023H24Rik|100043133|RIKEN cDNA 9130023H24 gene	NM_177001|9130023H24Rik|100043133|RIKEN cDNA 9130023H24 gene
mm9_v1_chr11_-_50655047_50655053	0.475682	GCUGGUG	BC118537|Zfp879|214779|zinc figer protein 879	AK036152|Zfp879|214779|zinc figer protein 879	NM_173387|Zfp879|214779|zinc figer protein 879
mm9_v1_chr2_-_167457476_167457545	0.469232	GCUGGUG	AK012021|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	BC003449|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	AK158230|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	NM_023230|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1
mm9_v1_chr2_-_124949149_124949396	0.461847	GCUGGUG	BC060946|Myef2|17876|myelin basic protein expression factor 2, repressor	AK129336|Myef2|17876|myelin basic protein expression factor 2, repressor	AK142363|Myef2|17876|myelin basic protein expression factor 2, repressor	AK143230|Myef2|17876|myelin basic protein expression factor 2, repressor	AK048404|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_001162417|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_001162418|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_010852|Myef2|17876|myelin basic protein expression factor 2, repressor	AK012133|Myef2|17876|myelin basic protein expression factor 2, repressor
mm9_v1_chr2_+_27020999_27021026	0.461502	GCUGGUG	BC141022|Dbh|13166|dopamine beta hydroxylase	BC171949|Dbh|13166|dopamine beta hydroxylase	AK132245|Dbh|13166|dopamine beta hydroxylase	NM_138942|Dbh|13166|dopamine beta hydroxylase
mm9_v1_chr1_+_136352075_136352146	0.459579	GCUGGUG	AK034170|Klhl12|240756|kelch-like 12 (Drosophila)	AK165280|Klhl12|240756|kelch-like 12 (Drosophila)	BC034514|Klhl12|240756|kelch-like 12 (Drosophila)	NM_153128|Klhl12|240756|kelch-like 12 (Drosophila)
mm9_v1_chr8_+_108378977_108379101	0.440767	GCUGGUG	NM_021513|Thap11|59016|THAP domain containing 11	AK166109|Thap11|59016|THAP domain containing 11	AK170457|Thap11|59016|THAP domain containing 11	AB041579|Thap11|59016|THAP domain containing 11	AK165981|Thap11|59016|THAP domain containing 11	BC138966|Thap11|59016|THAP domain containing 11	BC138987|Thap11|59016|THAP domain containing 11
mm9_v1_chr2_-_152158370_152158374	0.428011	GCUGGUG	BC034555|Rbck1|24105|RanBP-type and C3HC4-type zinc finger containing 1	NM_019705|Rbck1|24105|RanBP-type and C3HC4-type zinc finger containing 1
mm9_v1_chr11_+_70376359_70376411	0.421218	GCUGGUG	NM_001045959|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_001045964|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_016713|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_176893|Mink1|50932|misshapen-like kinase 1 (zebrafish)	AB035697|Mink1|50932|misshapen-like kinase 1 (zebrafish)	AB041925|Mink1|50932|misshapen-like kinase 1 (zebrafish)
mm9_v1_chr3_-_9610062_9610137	0.414563	GCUGGUG	AF292939|Zfp704|170753|zinc finger protein 704	NM_133218|Zfp704|170753|zinc finger protein 704
mm9_v1_chr2_-_152158111_152158185	0.412681	GCUGGUG	AK146176|Rbck1|24105|RanBP-type and C3HC4-type zinc finger containing 1	AK088591|Rbck1|24105|RanBP-type and C3HC4-type zinc finger containing 1	AK166075|Rbck1|24105|RanBP-type and C3HC4-type zinc finger containing 1	AK085559|Rbck1|24105|RanBP-type and C3HC4-type zinc finger containing 1	NM_001083921|Rbck1|24105|RanBP-type and C3HC4-type zinc finger containing 1
mm9_v1_chr3_-_103594950_103595238	0.403071	GCUGGUG	BC145697|Hipk1|15257|homeodomain interacting protein kinase 1	BC145699|Hipk1|15257|homeodomain interacting protein kinase 1	AF170303|Hipk1|15257|homeodomain interacting protein kinase 1	AF170304|Hipk1|15257|homeodomain interacting protein kinase 1	AF077658|Hipk1|15257|homeodomain interacting protein kinase 1	AK134408|Hipk1|15257|homeodomain interacting protein kinase 1	NM_010432|Hipk1|15257|homeodomain interacting protein kinase 1
mm9_v1_chr14_-_70553597_70553617	0.385079	GCUGGUG	AK050238|2610301G19Rik|219158|RIKEN cDNA 2610301G19 gene	NM_146055|2610301G19Rik|219158|RIKEN cDNA 2610301G19 gene	BC021475|2610301G19Rik|219158|RIKEN cDNA 2610301G19 gene
mm9_v1_chr11_+_105946215_105946222	0.384616	GCUGGUG	NM_011947|Map3k3|26406|mitogen-activated protein kinase kinase kinase 3	BC023781|Map3k3|26406|mitogen-activated protein kinase kinase kinase 3
mm9_v1_chr7_-_50745358_50745392	0.380493	GCUGGUG	AK039193|Iglon5|210094|IgLON family member 5	NM_001164518|Iglon5|210094|IgLON family member 5
mm9_v1_chr1_-_172236462_172236462	0.379276	GCUGGUG	NM_001198955|Gm7694|665574|predicted gene 7694
mm9_v1_chr13_-_12612537_12612714	0.377426	GCUGGUG	AK148351|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	AK041545|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	AK042414|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	AF358671|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	NM_133643|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain
mm9_v1_chr7_+_16986478_16986599	0.362049	GCUGGUG	NM_198631|Zc3h4|330474|zinc finger CCCH-type containing 4	AK151148|Zc3h4|330474|zinc finger CCCH-type containing 4	AK151306|Zc3h4|330474|zinc finger CCCH-type containing 4	BC057627|Zc3h4|330474|zinc finger CCCH-type containing 4
mm9_v1_chr8_+_11556062_11556065	0.354102	GCUGGUG	AK145553|Ing1|26356|inhibitor of growth family, member 1	AK076482|Ing1|26356|inhibitor of growth family, member 1	AK141466|Ing1|26356|inhibitor of growth family, member 1	AF177757|Ing1|26356|inhibitor of growth family, member 1	NM_011919|Ing1|26356|inhibitor of growth family, member 1
mm9_v1_chr3_+_88420105_88420182	0.351098	GCUGGUG	NM_001198911|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AK144972|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr7_-_91558468_91558528	0.347937	GCUGGUG	BC054546|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2	NM_007488|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2
mm9_v1_chr17_+_47641999_47642189	0.346624	GCUGGUG	NM_001081635|Ccnd3|12445|cyclin D3	NM_001081636|Ccnd3|12445|cyclin D3	AK161758|Ccnd3|12445|cyclin D3	AK083384|Ccnd3|12445|cyclin D3	AK020317|Ccnd3|12445|cyclin D3
mm9_v1_chr7_-_38892432_38892565	0.344795	GCUGGUG	AK089950|Ccne1|12447|cyclin E1	AK163046|Ccne1|12447|cyclin E1	AK165658|Ccne1|12447|cyclin E1	BC106191|Ccne1|12447|cyclin E1	NM_007633|Ccne1|12447|cyclin E1	BC062152|Ccne1|12447|cyclin E1	BC084588|Ccne1|12447|cyclin E1
mm9_v1_chr10_+_40069113_40069226	0.341943	GCUGGUG	AK122421|Cdk19|78334|cyclin-dependent kinase 19	NM_001168304|Cdk19|78334|cyclin-dependent kinase 19	NM_198164|Cdk19|78334|cyclin-dependent kinase 19	AK053651|Cdk19|78334|cyclin-dependent kinase 19	BC137614|Cdk19|78334|cyclin-dependent kinase 19	BC144782|Cdk19|78334|cyclin-dependent kinase 19	BC080280|Cdk19|78334|cyclin-dependent kinase 19
mm9_v1_chr3_+_88425011_88425071	0.335878	GCUGGUG	NM_008487|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AK156379|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AF177032|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	U28495|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr4_+_149493452_149493452	0.326916	GCUGGUG	AK029720|Slc2a5|56485|solute carrier family 2 (facilitated glucose transporter), member 5	NM_019741|Slc2a5|56485|solute carrier family 2 (facilitated glucose transporter), member 5
mm9_v1_chr7_+_132851389_132851439	0.31968	GCUGGUG	NM_001081022|D430042O09Rik|233865|RIKEN cDNA D430042O09 gene	BC157963|D430042O09Rik|233865|RIKEN cDNA D430042O09 gene	BC158019|D430042O09Rik|233865|RIKEN cDNA D430042O09 gene
mm9_v1_chr1_+_138364511_138364534	0.311682	GCUGGUG	BC158132|Kif14|381293|kinesin family member 14	NM_001081258|Kif14|381293|kinesin family member 14
mm9_v1_chr16_-_17911283_17911450	0.285841	GCUGGUG	AK088520|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK142684|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK148404|Dgcr14|27886|DiGeorge syndrome critical region gene 14	BC013711|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AF037256|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_001081633|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_022408|Dgcr14|27886|DiGeorge syndrome critical region gene 14
mm9_v1_chr11_+_55017825_55017912	0.278933	GCUGGUG	NM_153139|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	AY211262|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	BC138556|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	BC138558|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1
mm9_v1_chr9_+_102408467_102408467	0.244097	GCUGGUG	AJ293727|Ky|16716|kyphoscoliosis peptidase	NM_024291|Ky|16716|kyphoscoliosis peptidase
mm9_v1_chr18_-_38498564_38498663	0.243692	GCUGGUG	BC014800|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AK084247|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AF160355|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AK080610|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AK166069|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AF088903|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	NM_011937|Gnpda1|26384|glucosamine-6-phosphate deaminase 1
mm9_v1_chr4_+_84530230_84530239	0.240398	GCUGGUG	NM_175275|Cntln|338349|centlein, centrosomal protein	NM_177385|Cntln|338349|centlein, centrosomal protein
mm9_v1_chr11_+_87881747_87881842	0.229529	GCUGGUG	AF104410|Vezf1|22344|vascular endothelial zinc finger 1	NM_016686|Vezf1|22344|vascular endothelial zinc finger 1
mm9_v1_chr8_-_48437701_48437701	0.229362	GCUGGUG	BC100572|Stox2|71069|storkhead box 2	BC100573|Stox2|71069|storkhead box 2	NM_175162|Stox2|71069|storkhead box 2
mm9_v1_chr8_-_48374755_48374779	0.226115	GCUGGUG	AK053894|Stox2|71069|storkhead box 2	NM_001114311|Stox2|71069|storkhead box 2
mm9_v1_chr16_-_4001679_4001679	0.222271	GCUGGUG	BC065125|Slx4|52864|SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)	NM_177472|Slx4|52864|SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)
mm9_v1_chr11_+_3388229_3388301	0.218696	GCUGGUG	BC079556|Pla2g3|237625|phospholipase A2, group III	NM_172791|Pla2g3|237625|phospholipase A2, group III	AK033572|Pla2g3|237625|phospholipase A2, group III	AK081075|Pla2g3|237625|phospholipase A2, group III
mm9_v1_chr12_-_109241423_109241623	0.214423	GCUGGUG	BC019503|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AF186019|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AK088219|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043551|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043553|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043583|Bcl11b|58208|B-cell leukemia/lymphoma 11B	NM_001079883|Bcl11b|58208|B-cell leukemia/lymphoma 11B	NM_021399|Bcl11b|58208|B-cell leukemia/lymphoma 11B
mm9_v1_chr15_-_57723937_57723989	0.21423	GCUGGUG	AK152901|Derl1|67819|Der1-like domain family, member 1	AK148018|Derl1|67819|Der1-like domain family, member 1	AK152197|Derl1|67819|Der1-like domain family, member 1	AK043420|Derl1|67819|Der1-like domain family, member 1	NM_024207|Derl1|67819|Der1-like domain family, member 1	AK007435|Derl1|67819|Der1-like domain family, member 1
mm9_v1_chr3_-_133207209_133207353	0.199423	GCUGGUG	AK155776|Tet2|214133|tet oncogene family member 2	DQ079067|Tet2|214133|tet oncogene family member 2	NM_001040400|Tet2|214133|tet oncogene family member 2
mm9_v1_chr14_-_21553783_21553783	0.192358	GCUGGUG	AF520868|Ndst2|17423|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	NM_010811|Ndst2|17423|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2
mm9_v1_chr9_+_63450444_63450525	0.192307	GCUGGUG	AK159897|Aagab|66939|alpha- and gamma-adaptin binding protein	NM_025857|Aagab|66939|alpha- and gamma-adaptin binding protein	BC027311|Aagab|66939|alpha- and gamma-adaptin binding protein	AK017714|Aagab|66939|alpha- and gamma-adaptin binding protein
mm9_v1_chr11_-_93829704_93829834	0.180053	GCUGGUG	NM_008704|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in
mm9_v1_chr18_+_50212935_50213173	0.179462	GCUGGUG	NM_134131|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK087478|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK090350|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK090316|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK150965|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK149901|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK150445|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK151622|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK152426|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	BC009090|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8
mm9_v1_chr15_+_79521293_79521438	0.178518	GCUGGUG	AK150068|Gtpbp1|14904|GTP binding protein 1	AK150185|Gtpbp1|14904|GTP binding protein 1	AK158342|Gtpbp1|14904|GTP binding protein 1	AK004612|Gtpbp1|14904|GTP binding protein 1	AK147717|Gtpbp1|14904|GTP binding protein 1	AK170091|Gtpbp1|14904|GTP binding protein 1	BC046228|Gtpbp1|14904|GTP binding protein 1	NM_013818|Gtpbp1|14904|GTP binding protein 1	U87965|Gtpbp1|14904|GTP binding protein 1
mm9_v1_chr6_+_90412566_90412633	0.16458	GCUGGUG	AK138824|Klf15|66277|Kruppel-like factor 15	AK142618|Klf15|66277|Kruppel-like factor 15	AK009739|Klf15|66277|Kruppel-like factor 15	NM_023184|Klf15|66277|Kruppel-like factor 15
mm9_v1_chr15_+_81575277_81575277	0.152435	GCUGGUG	NM_001081016|Zc3h7b|20286|zinc finger CCCH type containing 7B
mm9_v1_chr1_+_174078145_174078245	0.151479	GCUGGUG	NM_153555|Dcaf8|98193|DDB1 and CUL4 associated factor 8	BC023704|Dcaf8|98193|DDB1 and CUL4 associated factor 8	AK146825|Dcaf8|98193|DDB1 and CUL4 associated factor 8	AK164799|Dcaf8|98193|DDB1 and CUL4 associated factor 8	AK047316|Dcaf8|98193|DDB1 and CUL4 associated factor 8
mm9_v1_chr14_-_98568744_98568810	0.151194	GCUGGUG	AF129510|Dach1|13134|dachshund 1 (Drosophila)	BC052005|Dach1|13134|dachshund 1 (Drosophila)	BC059934|Dach1|13134|dachshund 1 (Drosophila)	NM_001038610|Dach1|13134|dachshund 1 (Drosophila)	NM_007826|Dach1|13134|dachshund 1 (Drosophila)
mm9_v1_chr2_+_10292073_10292144	0.150861	GCUGGUG	AK147557|Sfmbt2|353282|Scm-like with four mbt domains 2	NM_001198808|Sfmbt2|353282|Scm-like with four mbt domains 2	AK049505|Sfmbt2|353282|Scm-like with four mbt domains 2	AK168444|Sfmbt2|353282|Scm-like with four mbt domains 2
mm9_v1_chr11_+_60541880_60542010	0.148361	GCUGGUG	NM_001009927|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	AK156917|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	AK171444|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	BC088984|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)
mm9_v1_chr8_+_122434697_122434814	0.14471	GCUGGUG	AK077453|Usp10|22224|ubiquitin specific peptidase 10	AK157970|Usp10|22224|ubiquitin specific peptidase 10	AK165156|Usp10|22224|ubiquitin specific peptidase 10	AK172443|Usp10|22224|ubiquitin specific peptidase 10	AK137015|Usp10|22224|ubiquitin specific peptidase 10	AK166243|Usp10|22224|ubiquitin specific peptidase 10	AK129083|Usp10|22224|ubiquitin specific peptidase 10	BC007134|Usp10|22224|ubiquitin specific peptidase 10	D84096|Usp10|22224|ubiquitin specific peptidase 10	NM_009462|Usp10|22224|ubiquitin specific peptidase 10	AK179830|Usp10|22224|ubiquitin specific peptidase 10
mm9_v1_chr19_+_11986887_11986895	0.137545	GCUGGUG	AK150301|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK170918|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	NM_172635|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK154102|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)
mm9_v1_chr4_-_126210701_126210715	0.135611	GCUGGUG	NM_153177|Eif2c4|76850|eukaryotic translation initiation factor 2C, 4	AK030018|Eif2c4|76850|eukaryotic translation initiation factor 2C, 4
mm9_v1_chr4_-_45097427_45097496	0.132572	GCUGGUG	AK153358|Fbxo10|269529|F-box protein 10	BC054731|Fbxo10|269529|F-box protein 10	AK150292|Fbxo10|269529|F-box protein 10	AK142389|Fbxo10|269529|F-box protein 10	NM_001024142|Fbxo10|269529|F-box protein 10
mm9_v1_chr8_+_113142480_113142625	0.124949	GCUGGUG	AK084520|Vac14|234729|Vac14 homolog (S. cerevisiae)	AK171577|Vac14|234729|Vac14 homolog (S. cerevisiae)	AK031952|Vac14|234729|Vac14 homolog (S. cerevisiae)	AK043319|Vac14|234729|Vac14 homolog (S. cerevisiae)	AK140191|Vac14|234729|Vac14 homolog (S. cerevisiae)	AK171883|Vac14|234729|Vac14 homolog (S. cerevisiae)	BC052199|Vac14|234729|Vac14 homolog (S. cerevisiae)	NM_146216|Vac14|234729|Vac14 homolog (S. cerevisiae)	AK046826|Vac14|234729|Vac14 homolog (S. cerevisiae)
mm9_v1_chr2_-_32816770_32816770	0.110424	GCUGGUG	BC049146|Lrsam1|227738|leucine rich repeat and sterile alpha motif containing 1	NM_199302|Lrsam1|227738|leucine rich repeat and sterile alpha motif containing 1
mm9_v1_chr7_-_91032695_91032850	0.108159	GCUGGUG	AK162446|Mesdc1|80889|mesoderm development candidate 1	AK084510|Mesdc1|80889|mesoderm development candidate 1	AK089082|Mesdc1|80889|mesoderm development candidate 1	AK036338|Mesdc1|80889|mesoderm development candidate 1	NM_030705|Mesdc1|80889|mesoderm development candidate 1
mm9_v1_chr1_-_34899878_34899900	0.106026	GCUGGUG	AK220453|Fam168b|214469|family with sequence similarity 168, member B	NM_001160235|Fam168b|214469|family with sequence similarity 168, member B	NM_001160236|Fam168b|214469|family with sequence similarity 168, member B	NM_174997|Fam168b|214469|family with sequence similarity 168, member B
mm9_v1_chr11_+_74644411_74644428	0.0964766	GCUGGUG	NM_010813|Mnt|17428|max binding protein	U77356|Mnt|17428|max binding protein
mm9_v1_chr13_-_55201655_55201679	0.0926064	GCUGGUG	AK052704|Uimc1|20184|ubiquitin interaction motif containing 1	NM_011307|Uimc1|20184|ubiquitin interaction motif containing 1	AK078206|Uimc1|20184|ubiquitin interaction motif containing 1	AK161177|Uimc1|20184|ubiquitin interaction motif containing 1	AK160926|Uimc1|20184|ubiquitin interaction motif containing 1
mm9_v1_chr16_-_18235102_18235235	0.089524	GCUGGUG	AY668947|Zdhhc8|27801|zinc finger, DHHC domain containing 8	AY894892|Zdhhc8|27801|zinc finger, DHHC domain containing 8	NM_172151|Zdhhc8|27801|zinc finger, DHHC domain containing 8
mm9_v1_chr14_+_31528800_31528932	0.0882575	GCUGGUG	AK154826|Sfmbt1|54650|Scm-like with four mbt domains 1	NM_001166532|Sfmbt1|54650|Scm-like with four mbt domains 1	BC036972|Sfmbt1|54650|Scm-like with four mbt domains 1	AK142330|Sfmbt1|54650|Scm-like with four mbt domains 1	BC018217|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr4_-_104548965_104549005	0.0846344	GCUGGUG	AB077296|C8a|230558|complement component 8, alpha polypeptide	AB077297|C8a|230558|complement component 8, alpha polypeptide	AB077298|C8a|230558|complement component 8, alpha polypeptide	BC027748|C8a|230558|complement component 8, alpha polypeptide	AK090245|C8a|230558|complement component 8, alpha polypeptide	AB077295|C8a|230558|complement component 8, alpha polypeptide	NM_146148|C8a|230558|complement component 8, alpha polypeptide
mm9_v1_chr6_+_120616386_120616438	0.0757519	GCUGGUG	AK137536|Cecr2|330409|cat eye syndrome chromosome region, candidate 2 homolog (human)	NM_001128151|Cecr2|330409|cat eye syndrome chromosome region, candidate 2 homolog (human)
mm9_v1_chr10_-_79229589_79229691	0.0753365	GCUGGUG	AK154781|Rnf126|70294|ring finger protein 126	NM_144528|Rnf126|70294|ring finger protein 126	BC016543|Rnf126|70294|ring finger protein 126	AK042319|Rnf126|70294|ring finger protein 126
mm9_v1_chr19_+_6241665_6241742	0.0730218	GCUGGUG	NM_194348|Atg2a|329015|ATG2 autophagy related 2 homolog A (S. cerevisiae)	BC063264|Atg2a|329015|ATG2 autophagy related 2 homolog A (S. cerevisiae)	AK129132|Atg2a|329015|ATG2 autophagy related 2 homolog A (S. cerevisiae)
mm9_v1_chr1_-_154749751_154749796	0.0631008	GCUGGUG	BC082789|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	BC086651|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_001005507|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_001160256|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr8_-_125842456_125842475	0.0624986	GCUGGUG	AK082847|Fanca|14087|Fanconi anemia, complementation group A	AK084990|Fanca|14087|Fanconi anemia, complementation group A	AK166112|Fanca|14087|Fanconi anemia, complementation group A	AF208122|Fanca|14087|Fanconi anemia, complementation group A	AF178934|Fanca|14087|Fanconi anemia, complementation group A	BC150705|Fanca|14087|Fanconi anemia, complementation group A	AF208116|Fanca|14087|Fanconi anemia, complementation group A	AF208118|Fanca|14087|Fanconi anemia, complementation group A	NM_016925|Fanca|14087|Fanconi anemia, complementation group A
mm9_v1_chr2_-_44968728_44968798	0.0509731	GCUGGUG	AJ535782|Zeb2|24136|zinc finger E-box binding homeobox 2	AK031541|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535780|Zeb2|24136|zinc finger E-box binding homeobox 2	NM_015753|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr16_+_4886183_4886360	0.0481993	GCUGGUG	NM_029657|Mgrn1|17237|mahogunin, ring finger 1	BC046830|Mgrn1|17237|mahogunin, ring finger 1	AK150176|Mgrn1|17237|mahogunin, ring finger 1	AK153407|Mgrn1|17237|mahogunin, ring finger 1	AK011747|Mgrn1|17237|mahogunin, ring finger 1	AK088533|Mgrn1|17237|mahogunin, ring finger 1	AK182412|Mgrn1|17237|mahogunin, ring finger 1
mm9_v1_chr12_-_82633781_82633909	0.0313536	GCUGGUG	AY138960|Synj2bp|24071|synaptojanin 2 binding protein	BC027433|Synj2bp|24071|synaptojanin 2 binding protein	AK013474|Synj2bp|24071|synaptojanin 2 binding protein	AK163362|Synj2bp|24071|synaptojanin 2 binding protein	AK008254|Synj2bp|24071|synaptojanin 2 binding protein	AY566156|Synj2bp|24071|synaptojanin 2 binding protein	AK008054|Synj2bp|24071|synaptojanin 2 binding protein	AK078422|Synj2bp|24071|synaptojanin 2 binding protein	AK030379|Synj2bp|24071|synaptojanin 2 binding protein	AK033514|Synj2bp|24071|synaptojanin 2 binding protein	NM_025292|Synj2bp|24071|synaptojanin 2 binding protein
mm9_v1_chr5_+_31117077_31117214	0.0143906	GCUGGUG	BC048833|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	AF468005|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	BC057918|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	NM_133350|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	AK177097|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3
