mm9_v1_chr2_+_102498839_102498845	11.3427	GGCAAGA	AK134609|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077514|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AK140095|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr6_+_4853319_4853431	7.4521	GGCAAGA	AB091828|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	NM_181595|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	AK158559|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	BC053748|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm9_v1_chr4_+_32504409_32504501	6.91153	GGCAAGA	NM_001109661|Bach2|12014|BTB and CNC homology 2	BC131642|Bach2|12014|BTB and CNC homology 2
mm9_v1_chr2_+_102546576_102546605	6.57693	GGCAAGA	AB007812|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	BC138255|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	BC138256|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077515|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_011393|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AB007811|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr9_-_75531734_75531890	6.46393	GGCAAGA	AK158315|Scg3|20255|secretogranin III	AK133655|Scg3|20255|secretogranin III	AK139140|Scg3|20255|secretogranin III	AK164089|Scg3|20255|secretogranin III	BC024785|Scg3|20255|secretogranin III	U02982|Scg3|20255|secretogranin III	AK148498|Scg3|20255|secretogranin III	NM_001164790|Scg3|20255|secretogranin III	NM_009130|Scg3|20255|secretogranin III
mm9_v1_chr5_-_68238654_68238670	6.05481	GGCAAGA	DQ503480|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK151709|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503479|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_001038999|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_009727|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503477|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr18_+_37127284_37127409	4.75565	GGCAAGA	D86917|Pcdha6|12937|protocadherin alpha 6	BC150815|Pcdha6|12937|protocadherin alpha 6	BC150816|Pcdha6|12937|protocadherin alpha 6	BC054813|Pcdha6|12937|protocadherin alpha 6	AY013764|Pcdha6|12937|protocadherin alpha 6	NM_007767|Pcdha6|12937|protocadherin alpha 6
mm9_v1_chr7_+_103359146_103359146	4.72451	GGCAAGA	AK147329|Odz4|23966|odd Oz/ten-m homolog 4 (Drosophila)	NM_011858|Odz4|23966|odd Oz/ten-m homolog 4 (Drosophila)
mm9_v1_chr18_+_37120093_37120209	4.67298	GGCAAGA	AY013763|Pcdha5|12941|protocadherin alpha 5	NM_009959|Pcdha5|12941|protocadherin alpha 5	AB008181|Pcdha5|12941|protocadherin alpha 5
mm9_v1_chr18_+_37179802_37179999	4.46634	GGCAAGA	AY013759|Pcdha12|192164|protocadherin alpha 12	NM_138663|Pcdha12|192164|protocadherin alpha 12	AB008180|Pcdha12|192164|protocadherin alpha 12
mm9_v1_chr18_+_37098858_37098971	4.4321	GGCAAGA	BC030897|Pcdha2|353234|protocadherin alpha 2	NM_198117|Pcdha2|353234|protocadherin alpha 2	BC141390|Pcdha2|353234|protocadherin alpha 2	AY013760|Pcdha2|353234|protocadherin alpha 2
mm9_v1_chr18_+_37089837_37089938	4.42393	GGCAAGA	BC082326|Pcdha1|116731|protocadherin alpha 1	AY013756|Pcdha1|116731|protocadherin alpha 1	NM_054072|Pcdha1|116731|protocadherin alpha 1
mm9_v1_chr11_-_3763899_3763908	4.39221	GGCAAGA	AK049816|Osbp2|74309|oxysterol binding protein 2	NM_152818|Osbp2|74309|oxysterol binding protein 2
mm9_v1_chr9_-_52487410_52487541	4.34726	GGCAAGA	BC109328|AI593442|330941|expressed sequence AI593442	NM_178906|AI593442|330941|expressed sequence AI593442	AK033979|AI593442|330941|expressed sequence AI593442
mm9_v1_chr15_+_82105322_82105458	4.33998	GGCAAGA	AF104411|Sept3|24050|septin 3	NM_011889|Sept3|24050|septin 3	BC055738|Sept3|24050|septin 3
mm9_v1_chr18_+_37303622_37303622	4.32494	GGCAAGA	AY013769|Pcdhac2|353237|protocadherin alpha subfamily C, 2	NM_001003672|Pcdhac2|353237|protocadherin alpha subfamily C, 2
mm9_v1_chr6_+_8459595_8459595	4.28126	GGCAAGA	NM_133236|Glcci1|170772|glucocorticoid induced transcript 1
mm9_v1_chr9_-_108499855_108499944	4.1857	GGCAAGA	AK016685|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	AK161992|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	AK038927|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	AK047714|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	BC111871|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	NM_028944|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	AK046783|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)
mm9_v1_chr18_+_37105758_37105860	4.17162	GGCAAGA	AK129120|Pcdha3|192163|protocadherin alpha 3	BC141348|Pcdha3|192163|protocadherin alpha 3	AY013761|Pcdha3|192163|protocadherin alpha 3	NM_138662|Pcdha3|192163|protocadherin alpha 3
mm9_v1_chr1_-_171677653_171677778	4.06201	GGCAAGA	AB004315|Rgs4|19736|regulator of G-protein signaling 4	BC003882|Rgs4|19736|regulator of G-protein signaling 4	BC055293|Rgs4|19736|regulator of G-protein signaling 4	AK030536|Rgs4|19736|regulator of G-protein signaling 4	AK039134|Rgs4|19736|regulator of G-protein signaling 4	DQ346659|Rgs4|19736|regulator of G-protein signaling 4	DQ346660|Rgs4|19736|regulator of G-protein signaling 4	DQ346661|Rgs4|19736|regulator of G-protein signaling 4	NM_009062|Rgs4|19736|regulator of G-protein signaling 4
mm9_v1_chr19_-_8913619_8913779	4.01877	GGCAAGA	BC029680|Gng3|14704|guanine nucleotide binding protein (G protein), gamma 3	AK032646|Gng3|14704|guanine nucleotide binding protein (G protein), gamma 3	AK004459|Gng3|14704|guanine nucleotide binding protein (G protein), gamma 3	NM_010316|Gng3|14704|guanine nucleotide binding protein (G protein), gamma 3
mm9_v1_chr18_+_37157533_37157533	4.01319	GGCAAGA	AY013767|Pcdha9|192161|protocadherin alpha 9	NM_138661|Pcdha9|192161|protocadherin alpha 9
mm9_v1_chr18_+_37152024_37152120	3.97341	GGCAAGA	BC139424|Pcdha8|353235|protocadherin alpha 8	BC139426|Pcdha8|353235|protocadherin alpha 8	AY013766|Pcdha8|353235|protocadherin alpha 8	NM_201243|Pcdha8|353235|protocadherin alpha 8
mm9_v1_chrX_-_34185389_34185408	3.73246	GGCAAGA	AK046007|Akap17b|338351|A kinase (PRKA) anchor protein 17B	AK054091|Akap17b|338351|A kinase (PRKA) anchor protein 17B	NM_001081956|Akap17b|338351|A kinase (PRKA) anchor protein 17B
mm9_v1_chr18_+_37133455_37133703	3.67384	GGCAAGA	BC080863|Pcdha7|12939|protocadherin alpha 7	AY013765|Pcdha7|12939|protocadherin alpha 7	NM_009957|Pcdha7|12939|protocadherin alpha 7	AB008179|Pcdha7|12939|protocadherin alpha 7	EU854476|Pcdha7|12939|protocadherin alpha 7
mm9_v1_chr7_-_13361006_13361006	3.594	GGCAAGA	NM_001017955|Zscan18|232875|zinc finger and SCAN domain containing 18
mm9_v1_chr2_-_104250490_104250490	3.53882	GGCAAGA	NM_001033347|D430041D05Rik|241589|RIKEN cDNA D430041D05 gene
mm9_v1_chr18_+_65183180_65183324	3.50161	GGCAAGA	NM_031881|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr15_+_68758773_68758908	3.45414	GGCAAGA	AF079763|Khdrbs3|13992|KH domain containing, RNA binding, signal transduction associated 3	AF099092|Khdrbs3|13992|KH domain containing, RNA binding, signal transduction associated 3	NM_010158|Khdrbs3|13992|KH domain containing, RNA binding, signal transduction associated 3	AK014353|Khdrbs3|13992|KH domain containing, RNA binding, signal transduction associated 3	BC057577|Khdrbs3|13992|KH domain containing, RNA binding, signal transduction associated 3
mm9_v1_chr14_+_28435613_28435695	3.45404	GGCAAGA	AK147213|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	BC056760|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	NM_177814|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	AK032385|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2
mm9_v1_chr11_+_100436228_100436259	3.38653	GGCAAGA	AK154654|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	NM_009923|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	AK158318|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr6_+_29867012_29867023	3.34408	GGCAAGA	AK041004|Fam40b|320609|family with sequence similarity 40, member B	AK042073|Fam40b|320609|family with sequence similarity 40, member B	AK052271|Fam40b|320609|family with sequence similarity 40, member B	AK163706|Fam40b|320609|family with sequence similarity 40, member B	NM_001037740|Fam40b|320609|family with sequence similarity 40, member B	NM_177204|Fam40b|320609|family with sequence similarity 40, member B	BC147502|Fam40b|320609|family with sequence similarity 40, member B	BC172034|Fam40b|320609|family with sequence similarity 40, member B
mm9_v1_chr6_+_39331379_39331426	3.22411	GGCAAGA	AK017590|Rab19|19331|RAB19, member RAS oncogene family	BC032936|Rab19|19331|RAB19, member RAS oncogene family	NM_011226|Rab19|19331|RAB19, member RAS oncogene family
mm9_v1_chr5_-_124778459_124778459	3.18876	GGCAAGA	NM_001081323|Mphosph9|269702|M-phase phosphoprotein 9
mm9_v1_chr2_+_14525932_14526000	3.13412	GGCAAGA	AK034054|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	NM_023116|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	FM872408|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	BC109156|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	BC109157|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit
mm9_v1_chr14_-_80171003_80171120	3.12784	GGCAAGA	AK140407|Pcdh8|18530|protocadherin 8	AF231125|Pcdh8|18530|protocadherin 8	BC052388|Pcdh8|18530|protocadherin 8	BC053008|Pcdh8|18530|protocadherin 8	AK048638|Pcdh8|18530|protocadherin 8	AK049982|Pcdh8|18530|protocadherin 8	NM_001042726|Pcdh8|18530|protocadherin 8	NM_021543|Pcdh8|18530|protocadherin 8
mm9_v1_chr15_+_30102306_30102347	3.07414	GGCAAGA	NM_008729|Ctnnd2|18163|catenin (cadherin associated protein), delta 2	U90331|Ctnnd2|18163|catenin (cadherin associated protein), delta 2
mm9_v1_chr11_+_100437204_100437208	2.98907	GGCAAGA	AK041969|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	AK140280|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	NM_001146318|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chrX_+_39855629_39855874	2.9817	GGCAAGA	AK042476|Sh2d1a|20400|SH2 domain protein 1A	AF072903|Sh2d1a|20400|SH2 domain protein 1A	AK040076|Sh2d1a|20400|SH2 domain protein 1A	NM_011364|Sh2d1a|20400|SH2 domain protein 1A	BC065390|Sh2d1a|20400|SH2 domain protein 1A	AF097632|Sh2d1a|20400|SH2 domain protein 1A	AF097633|Sh2d1a|20400|SH2 domain protein 1A	BC147367|Sh2d1a|20400|SH2 domain protein 1A	BC147368|Sh2d1a|20400|SH2 domain protein 1A
mm9_v1_chr15_-_33617572_33617639	2.96665	GGCAAGA	AK087510|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	AK173253|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	BC079547|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	NM_001085421|Tspyl5|239364|testis-specific protein, Y-encoded-like 5
mm9_v1_chrX_-_133403050_133403118	2.95555	GGCAAGA	BC107383|Rab9b|319642|RAB9B, member RAS oncogene family	AK034442|Rab9b|319642|RAB9B, member RAS oncogene family	NM_176971|Rab9b|319642|RAB9B, member RAS oncogene family	AK049693|Rab9b|319642|RAB9B, member RAS oncogene family
mm9_v1_chr2_+_145068346_145068346	2.91797	GGCAAGA	BC017615|Slc24a3|94249|solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	NM_053195|Slc24a3|94249|solute carrier family 24 (sodium/potassium/calcium exchanger), member 3
mm9_v1_chr14_-_70132309_70132386	2.91207	GGCAAGA	BC024115|Chmp7|105513|CHMP family, member 7	BC033365|Chmp7|105513|CHMP family, member 7	NM_134078|Chmp7|105513|CHMP family, member 7
mm9_v1_chr3_+_28162135_28162218	2.89446	GGCAAGA	BC050866|Tnik|665113|TRAF2 and NCK interacting kinase	BC050868|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163007|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163008|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163009|Tnik|665113|TRAF2 and NCK interacting kinase	NM_026910|Tnik|665113|TRAF2 and NCK interacting kinase	AK041777|Tnik|665113|TRAF2 and NCK interacting kinase	AK133568|Tnik|665113|TRAF2 and NCK interacting kinase	AK039113|Tnik|665113|TRAF2 and NCK interacting kinase
mm9_v1_chr11_-_23397927_23397986	2.88994	GGCAAGA	BC038397|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	BC052829|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK033696|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK093945|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	NM_172391|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK154196|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK155265|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK137116|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)
mm9_v1_chr9_+_103014374_103014418	2.85062	GGCAAGA	BC060618|Rab6b|270192|RAB6B, member RAS oncogene family	NM_173781|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr2_-_156817751_156817861	2.80416	GGCAAGA	AK002272|Ndrg3|29812|N-myc downstream regulated gene 3	AB033922|Ndrg3|29812|N-myc downstream regulated gene 3	BC018504|Ndrg3|29812|N-myc downstream regulated gene 3	AK036277|Ndrg3|29812|N-myc downstream regulated gene 3	AK037487|Ndrg3|29812|N-myc downstream regulated gene 3	AK029378|Ndrg3|29812|N-myc downstream regulated gene 3	AK004689|Ndrg3|29812|N-myc downstream regulated gene 3	AK154927|Ndrg3|29812|N-myc downstream regulated gene 3	NM_013865|Ndrg3|29812|N-myc downstream regulated gene 3	NM_180956|Ndrg3|29812|N-myc downstream regulated gene 3
mm9_v1_chr2_-_160934743_160934810	2.77934	GGCAAGA	BC145629|Chd6|71389|chromodomain helicase DNA binding protein 6	BC150806|Chd6|71389|chromodomain helicase DNA binding protein 6	AK018129|Chd6|71389|chromodomain helicase DNA binding protein 6	AK040495|Chd6|71389|chromodomain helicase DNA binding protein 6	AK142177|Chd6|71389|chromodomain helicase DNA binding protein 6	AK086807|Chd6|71389|chromodomain helicase DNA binding protein 6	AK162083|Chd6|71389|chromodomain helicase DNA binding protein 6	NM_173368|Chd6|71389|chromodomain helicase DNA binding protein 6	AK080892|Chd6|71389|chromodomain helicase DNA binding protein 6	AK080927|Chd6|71389|chromodomain helicase DNA binding protein 6
mm9_v1_chr2_+_157385835_157385932	2.77625	GGCAAGA	AK003004|Nnat|18111|neuronatin	AK077465|Nnat|18111|neuronatin	AK160626|Nnat|18111|neuronatin	NM_010923|Nnat|18111|neuronatin	NM_180960|Nnat|18111|neuronatin	X83569|Nnat|18111|neuronatin	X83570|Nnat|18111|neuronatin	BC036984|Nnat|18111|neuronatin	AB004048|Nnat|18111|neuronatin	X83568|Nnat|18111|neuronatin
mm9_v1_chr1_-_136131981_136132033	2.77481	GGCAAGA	NM_001008533|Adora1|11539|adenosine A1 receptor	AK038774|Adora1|11539|adenosine A1 receptor	NM_001039510|Adora1|11539|adenosine A1 receptor	AK134532|Adora1|11539|adenosine A1 receptor
mm9_v1_chr12_-_100139666_100139693	2.73472	GGCAAGA	AK081694|Eml5|319670|echinoderm microtubule associated protein like 5	NM_001081191|Eml5|319670|echinoderm microtubule associated protein like 5
mm9_v1_chr4_-_86876328_86876443	2.70609	GGCAAGA	AK038800|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK136058|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	NM_172426|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chrX_-_42143327_42143373	2.70179	GGCAAGA	AK038557|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1	AK047360|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1	NM_001190718|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1	AK034472|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1	NM_178739|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1
mm9_v1_chr2_-_178149153_178149214	2.5785	GGCAAGA	NM_001085501|Ppp1r3d|228966|protein phosphatase 1, regulatory subunit 3D
mm9_v1_chr1_+_78306890_78306952	2.57718	GGCAAGA	BC049995|Sgpp2|433323|sphingosine-1-phosphate phosphotase 2	NM_001004173|Sgpp2|433323|sphingosine-1-phosphate phosphotase 2
mm9_v1_chr1_-_175297778_175297829	2.5647	GGCAAGA	AK036352|Cadm3|94332|cell adhesion molecule 3	AK053077|Cadm3|94332|cell adhesion molecule 3	AK038917|Cadm3|94332|cell adhesion molecule 3	NM_053199|Cadm3|94332|cell adhesion molecule 3
mm9_v1_chr4_-_91042997_91043190	2.56105	GGCAAGA	AK149201|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	AK141919|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_001177883|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr16_+_11066390_11066492	2.55898	GGCAAGA	NM_009223|Snn|20621|stannin	BC006961|Snn|20621|stannin	AK149685|Snn|20621|stannin	BC063027|Snn|20621|stannin	BC017685|Snn|20621|stannin
mm9_v1_chr11_+_75345164_75345232	2.54339	GGCAAGA	AB120363|Slc43a2|215113|solute carrier family 43, member 2	BC042513|Slc43a2|215113|solute carrier family 43, member 2	NM_173388|Slc43a2|215113|solute carrier family 43, member 2
mm9_v1_chr18_+_37112301_37112419	2.52291	GGCAAGA	AK149282|Pcdha4|12936|protocadherin alpha 4	AK048980|Pcdha4|12936|protocadherin alpha 4	BC060211|Pcdha4|12936|protocadherin alpha 4	D86916|Pcdha4|12936|protocadherin alpha 4	NM_007766|Pcdha4|12936|protocadherin alpha 4	AF464180|Pcdha4-g|100384868|protocadherin alpha 4-gamma	NM_001174154|Pcdha4-g|100384868|protocadherin alpha 4-gamma	AY013762|Pcdha4|12936|protocadherin alpha 4
mm9_v1_chr4_-_91038729_91038745	2.51911	GGCAAGA	U29088|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_010486|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207686|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr9_-_75446888_75446974	2.46164	GGCAAGA	AK076562|Tmod2|50876|tropomodulin 2	AK015263|Tmod2|50876|tropomodulin 2	AK017072|Tmod2|50876|tropomodulin 2	BC052227|Tmod2|50876|tropomodulin 2	NM_001038710|Tmod2|50876|tropomodulin 2	AK015719|Tmod2|50876|tropomodulin 2
mm9_v1_chr1_-_37776633_37776680	2.44862	GGCAAGA	AK039052|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene	BC072639|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene	NM_028096|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene
mm9_v1_chr6_-_52859613_52859613	2.43864	GGCAAGA	BC048577|Jazf1|231986|JAZF zinc finger 1	NM_001168277|Jazf1|231986|JAZF zinc finger 1
mm9_v1_chr2_+_179777187_179777250	2.42359	GGCAAGA	NM_178750|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1	BC054730|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1	AK133944|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1
mm9_v1_chrX_-_101017286_101017329	2.40664	GGCAAGA	AF045692|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2	NM_009197|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm9_v1_chr2_+_124436031_124436031	2.38999	GGCAAGA	AB091532|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_172537|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199238|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199239|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199240|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199241|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr4_-_91066674_91066674	2.37624	GGCAAGA	BC049125|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	BC058393|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207685|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr9_+_111214242_111214242	2.37038	GGCAAGA	AK079552|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1	NM_001164659|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1
mm9_v1_chr13_-_100286521_100286556	2.35949	GGCAAGA	NM_008634|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr1_+_155747072_155747097	2.35212	GGCAAGA	AK137969|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK159106|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK160670|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AY044241|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	NM_008131|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK162685|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK168493|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	BC015086|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	X16314|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)
mm9_v1_chr8_+_115093942_115094124	2.35161	GGCAAGA	BC034628|Cntnap4|170571|contactin associated protein-like 4	NM_130457|Cntnap4|170571|contactin associated protein-like 4	AK142816|Cntnap4|170571|contactin associated protein-like 4	AK081891|Cntnap4|170571|contactin associated protein-like 4	AK053611|Cntnap4|170571|contactin associated protein-like 4	AK042607|Cntnap4|170571|contactin associated protein-like 4	AK173255|Cntnap4|170571|contactin associated protein-like 4	AF333770|Cntnap4|170571|contactin associated protein-like 4
mm9_v1_chr12_-_71448600_71448600	2.32657	GGCAAGA	BC052034|Trim9|94090|tripartite motif-containing 9	NM_001110202|Trim9|94090|tripartite motif-containing 9	NM_001110203|Trim9|94090|tripartite motif-containing 9	NM_053167|Trim9|94090|tripartite motif-containing 9
mm9_v1_chr11_-_86807216_86807263	2.31644	GGCAAGA	NM_001005341|Ypel2|77864|yippee-like 2 (Drosophila)
mm9_v1_chr18_+_65047408_65047414	2.26982	GGCAAGA	NM_001114386|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr3_+_151873407_151873495	2.26374	GGCAAGA	AK028418|Fubp1|51886|far upstream element (FUSE) binding protein 1	NM_057172|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK167730|Fubp1|51886|far upstream element (FUSE) binding protein 1	BC023780|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK032517|Fubp1|51886|far upstream element (FUSE) binding protein 1	BC014763|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK029458|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK079204|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK138011|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK166066|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK160815|Fubp1|51886|far upstream element (FUSE) binding protein 1
mm9_v1_chr13_+_41345120_41345273	2.25199	GGCAAGA	NM_001135577|BC024659|108934|cDNA sequence BC024659	BC066054|BC024659|108934|cDNA sequence BC024659	BC094222|BC024659|108934|cDNA sequence BC024659
mm9_v1_chr9_-_103664100_103664222	2.22185	GGCAAGA	BC052085|Tmem108|81907|transmembrane protein 108	AK077586|Tmem108|81907|transmembrane protein 108	AK044989|Tmem108|81907|transmembrane protein 108	AK047474|Tmem108|81907|transmembrane protein 108	AK086266|Tmem108|81907|transmembrane protein 108	AK141589|Tmem108|81907|transmembrane protein 108	AK052330|Tmem108|81907|transmembrane protein 108	NM_178638|Tmem108|81907|transmembrane protein 108
mm9_v1_chrX_-_131745187_131745225	2.184	GGCAAGA	AK005297|Tceal6|66104|transcription elongation factor A (SII)-like 6	BC087890|Tceal6|66104|transcription elongation factor A (SII)-like 6	NM_025355|Tceal6|66104|transcription elongation factor A (SII)-like 6
mm9_v1_chr19_-_4175478_4175577	2.17989	GGCAAGA	NM_134148|Carns1|107239|carnosine synthase 1
mm9_v1_chr11_+_80114320_80114577	2.16276	GGCAAGA	AJ313479|Rhbdl3|246104|rhomboid, veinlet-like 3 (Drosophila)	NM_139228|Rhbdl3|246104|rhomboid, veinlet-like 3 (Drosophila)	BC054784|Rhbdl3|246104|rhomboid, veinlet-like 3 (Drosophila)	BC056969|Rhbdl3|246104|rhomboid, veinlet-like 3 (Drosophila)
mm9_v1_chr9_-_75459125_75459169	2.15779	GGCAAGA	AK147581|Tmod2|50876|tropomodulin 2	NM_016711|Tmod2|50876|tropomodulin 2
mm9_v1_chr8_-_63462080_63462110	2.15753	GGCAAGA	AK159698|Clcn3|12725|chloride channel 3	AK036501|Clcn3|12725|chloride channel 3	NM_007711|Clcn3|12725|chloride channel 3	NM_173873|Clcn3|12725|chloride channel 3	NM_173874|Clcn3|12725|chloride channel 3
mm9_v1_chr13_-_92901406_92901450	2.09607	GGCAAGA	NM_009027|Rasgrf2|19418|RAS protein-specific guanine nucleotide-releasing factor 2	U67326|Rasgrf2|19418|RAS protein-specific guanine nucleotide-releasing factor 2
mm9_v1_chr17_+_86567003_86567165	2.08269	GGCAAGA	AK082438|Prkce|18754|protein kinase C, epsilon	NM_011104|Prkce|18754|protein kinase C, epsilon	AK042994|Prkce|18754|protein kinase C, epsilon
mm9_v1_chr9_-_16182674_16182674	2.06697	GGCAAGA	NM_001080814|Fat3|270120|FAT tumor suppressor homolog 3 (Drosophila)
mm9_v1_chrX_-_161764912_161765057	2.01468	GGCAAGA	BC056342|Glra2|237213|glycine receptor, alpha 2 subunit	BC068987|Glra2|237213|glycine receptor, alpha 2 subunit	NM_183427|Glra2|237213|glycine receptor, alpha 2 subunit	AK135134|Glra2|237213|glycine receptor, alpha 2 subunit
mm9_v1_chr9_+_32031833_32031859	2.01266	GGCAAGA	NM_177379|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr19_+_42322063_42322067	2.0022	GGCAAGA	AK016850|Golga7b|71146|golgi autoantigen, golgin subfamily a, 7B	NM_001141983|Golga7b|71146|golgi autoantigen, golgin subfamily a, 7B
mm9_v1_chr11_-_5965743_5965763	1.98856	GGCAAGA	AK046454|Camk2b|12323|calcium/calmodulin-dependent protein kinase II, beta	NM_001174053|Camk2b|12323|calcium/calmodulin-dependent protein kinase II, beta	NM_001174054|Camk2b|12323|calcium/calmodulin-dependent protein kinase II, beta	NM_007595|Camk2b|12323|calcium/calmodulin-dependent protein kinase II, beta
mm9_v1_chr13_-_117099629_117099895	1.93661	GGCAAGA	AB104633|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AJ132765|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132609|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK044406|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK090263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK143052|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	NM_021459|Isl1|16392|ISL1 transcription factor, LIM/homeodomain
mm9_v1_chr6_+_115084919_115085009	1.91899	GGCAAGA	AF096867|Syn2|20965|synapsin II	NM_001111015|Syn2|20965|synapsin II	NM_013681|Syn2|20965|synapsin II	BC053427|Syn2|20965|synapsin II
mm9_v1_chr7_+_116154373_116154494	1.90098	GGCAAGA	AK165720|Tub|22141|tubby candidate gene	NM_021885|Tub|22141|tubby candidate gene	U52433|Tub|22141|tubby candidate gene	BC096554|Tub|22141|tubby candidate gene	U54643|Tub|22141|tubby candidate gene
mm9_v1_chr19_-_57290515_57290521	1.84585	GGCAAGA	BC141083|Ablim1|226251|actin-binding LIM protein 1	AF404774|Ablim1|226251|actin-binding LIM protein 1	NM_178688|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr5_-_124545776_124545806	1.84554	GGCAAGA	AK044140|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	AB093298|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	BC026455|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	AF216495|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	NM_019875|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9
mm9_v1_chr5_+_148768875_148768913	1.83954	GGCAAGA	AK147457|Mtus2|77521|microtubule associated tumor suppressor candidate 2	NM_029920|Mtus2|77521|microtubule associated tumor suppressor candidate 2
mm9_v1_chr12_+_16817770_16817770	1.82322	GGCAAGA	NM_033270|E2f6|50496|E2F transcription factor 6
mm9_v1_chr2_+_65683823_65683911	1.78017	GGCAAGA	NM_153409|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	NM_178634|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	EF210820|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK039150|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK082649|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK020730|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK080761|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	BC055701|Csrnp3|77771|cysteine-serine-rich nuclear protein 3
mm9_v1_chr4_-_86873866_86873867	1.77506	GGCAAGA	NM_001110240|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC115867|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC116637|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr3_+_33699111_33699116	1.76363	GGCAAGA	AK031605|Ttc14|67120|tetratricopeptide repeat domain 14	AK134539|Ttc14|67120|tetratricopeptide repeat domain 14	NM_025978|Ttc14|67120|tetratricopeptide repeat domain 14	NM_027619|Ttc14|67120|tetratricopeptide repeat domain 14
mm9_v1_chr15_+_99532698_99532771	1.76342	GGCAAGA	NM_031842|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC059921|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	M25773|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	U66620|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC079839|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr3_+_103718042_103718073	1.75877	GGCAAGA	AB101658|Rsbn1|229675|rosbin, round spermatid basic protein 1	NM_172684|Rsbn1|229675|rosbin, round spermatid basic protein 1	BC139213|Rsbn1|229675|rosbin, round spermatid basic protein 1	BC139215|Rsbn1|229675|rosbin, round spermatid basic protein 1
mm9_v1_chr17_+_26852581_26852657	1.75285	GGCAAGA	AK030092|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	NM_029870|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK044760|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK020796|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132423|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132454|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene
mm9_v1_chr19_-_57271875_57272120	1.7369	GGCAAGA	AF404775|Ablim1|226251|actin-binding LIM protein 1	AK143907|Ablim1|226251|actin-binding LIM protein 1	NM_001103177|Ablim1|226251|actin-binding LIM protein 1	AK122196|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr5_-_124666426_124666426	1.71693	GGCAAGA	AF058693|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2	NM_011256|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2
mm9_v1_chr1_+_183081058_183081062	1.7136	GGCAAGA	NM_030131|Cnih4|98417|cornichon homolog 4 (Drosophila)
mm9_v1_chr3_+_136333733_136333756	1.69314	GGCAAGA	J05479|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	NM_008913|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	BC138612|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr16_-_4679664_4679776	1.67978	GGCAAGA	AK143624|Coro7|78885|coronin 7	AK018739|Coro7|78885|coronin 7	AK088155|Coro7|78885|coronin 7	AK041000|Coro7|78885|coronin 7	AK037894|Coro7|78885|coronin 7	BC061006|Coro7|78885|coronin 7	NM_030205|Coro7|78885|coronin 7	AK040408|Coro7|78885|coronin 7	AK150051|Coro7|78885|coronin 7	AK039585|Coro7|78885|coronin 7
mm9_v1_chr12_+_56256090_56256090	1.66369	GGCAAGA	AK136033|Srp54b|665155|signal recognition particle 54B	NM_001100109|Srp54b|665155|signal recognition particle 54B
mm9_v1_chr7_+_90015842_90015842	1.6521	GGCAAGA	NM_175366|Mex3b|108797|mex3 homolog B (C. elegans)
mm9_v1_chr8_-_63433528_63433596	1.64302	GGCAAGA	BC057133|Clcn3|12725|chloride channel 3	NM_173876|Clcn3|12725|chloride channel 3
mm9_v1_chr12_+_112127468_112127521	1.62445	GGCAAGA	AK147592|Tecpr2|104859|tectonin beta-propeller repeat containing 2	NM_001081057|Tecpr2|104859|tectonin beta-propeller repeat containing 2	AK031736|Tecpr2|104859|tectonin beta-propeller repeat containing 2	AK129113|Tecpr2|104859|tectonin beta-propeller repeat containing 2
mm9_v1_chr7_+_104480819_104480860	1.61478	GGCAAGA	NM_001039039|Kctd21|622320|potassium channel tetramerisation domain containing 21	AK141547|Kctd21|622320|potassium channel tetramerisation domain containing 21
mm9_v1_chr8_-_113329771_113329802	1.61365	GGCAAGA	AK008082|Il34|76527|interleukin 34	BC016254|Il34|76527|interleukin 34	NM_001135100|Il34|76527|interleukin 34	NM_029646|Il34|76527|interleukin 34
mm9_v1_chr17_+_26551909_26551909	1.61114	GGCAAGA	DQ839448|Neurl1b|240055|neuralized homolog 1b (Drosophila)	GQ414760|Neurl1b|240055|neuralized homolog 1b (Drosophila)	NM_001081656|Neurl1b|240055|neuralized homolog 1b (Drosophila)
mm9_v1_chr7_+_25862223_25862340	1.57238	GGCAAGA	AK143997|Zfp574|232976|zinc finger protein 574	NM_001168506|Zfp574|232976|zinc finger protein 574	NM_175477|Zfp574|232976|zinc finger protein 574	AK053744|Zfp574|232976|zinc finger protein 574	BC059044|Zfp574|232976|zinc finger protein 574	AK042074|Zfp574|232976|zinc finger protein 574	AK170243|Zfp574|232976|zinc finger protein 574	BC021833|Zfp574|232976|zinc finger protein 574	BC094354|Zfp574|232976|zinc finger protein 574
mm9_v1_chr1_+_61034757_61034802	1.54899	GGCAAGA	NM_017480|Icos|54167|inducible T-cell co-stimulator	AK030827|Icos|54167|inducible T-cell co-stimulator	AJ250559|Icos|54167|inducible T-cell co-stimulator	BC034852|Icos|54167|inducible T-cell co-stimulator	AB023132|Icos|54167|inducible T-cell co-stimulator	AF257230|Icos|54167|inducible T-cell co-stimulator	AF216748|Icos|54167|inducible T-cell co-stimulator
mm9_v1_chrX_+_80194208_80194241	1.51394	GGCAAGA	AK052856|Dmd|13405|dystrophin, muscular dystrophy	NM_007868|Dmd|13405|dystrophin, muscular dystrophy	M68859|Dmd|13405|dystrophin, muscular dystrophy
mm9_v1_chr2_+_22477837_22477846	1.51088	GGCAAGA	D42051|Gad2|14417|glutamic acid decarboxylase 2	NM_008078|Gad2|14417|glutamic acid decarboxylase 2
mm9_v1_chr7_+_104728398_104728430	1.50827	GGCAAGA	AK134242|Rsf1|233532|remodeling and spacing factor 1	NM_001081267|Rsf1|233532|remodeling and spacing factor 1	AK138087|Rsf1|233532|remodeling and spacing factor 1	AK146675|Rsf1|233532|remodeling and spacing factor 1	BC085127|Rsf1|233532|remodeling and spacing factor 1	AK146154|Rsf1|233532|remodeling and spacing factor 1	AK032853|Rsf1|233532|remodeling and spacing factor 1
mm9_v1_chr12_+_25516433_25516564	1.49932	GGCAAGA	NM_001083341|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	NM_026037|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK076045|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK012931|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK031682|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK031824|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK033106|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK034873|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	BC025020|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK215458|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AB297383|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AB305046|Mboat2|67216|membrane bound O-acyltransferase domain containing 2
mm9_v1_chrX_+_148613496_148613589	1.48765	GGCAAGA	AK155453|Iqsec2|245666|IQ motif and Sec7 domain 2	NM_001005475|Iqsec2|245666|IQ motif and Sec7 domain 2
mm9_v1_chr19_-_5510453_5510506	1.46826	GGCAAGA	AK047234|Snx32|225861|sorting nexin 32	BC048922|Snx32|225861|sorting nexin 32	NM_001024560|Snx32|225861|sorting nexin 32	AK037118|Snx32|225861|sorting nexin 32	AK143441|Snx32|225861|sorting nexin 32
mm9_v1_chr17_-_46624611_46624627	1.44487	GGCAAGA	NM_001162864|Ttbk1|106763|tau tubulin kinase 1
mm9_v1_chr7_+_13483153_13483228	1.43773	GGCAAGA	AK052559|Zscan22|232878|zinc finger and SCAN domain containing 22	AK085207|Zscan22|232878|zinc finger and SCAN domain containing 22	NM_001001447|Zscan22|232878|zinc finger and SCAN domain containing 22	AK163694|Zscan22|232878|zinc finger and SCAN domain containing 22	AK078591|Zscan22|232878|zinc finger and SCAN domain containing 22	BC026676|Zscan22|232878|zinc finger and SCAN domain containing 22
mm9_v1_chr11_+_96325904_96325975	1.43464	GGCAAGA	AK040068|Skap1|78473|src family associated phosphoprotein 1	NM_001033186|Skap1|78473|src family associated phosphoprotein 1	NM_001177898|Skap1|78473|src family associated phosphoprotein 1	NM_001177899|Skap1|78473|src family associated phosphoprotein 1	AK138030|Skap1|78473|src family associated phosphoprotein 1	AK169685|Skap1|78473|src family associated phosphoprotein 1	AK137792|Skap1|78473|src family associated phosphoprotein 1	AK137942|Skap1|78473|src family associated phosphoprotein 1	AK153578|Skap1|78473|src family associated phosphoprotein 1	AK169825|Skap1|78473|src family associated phosphoprotein 1	AK041917|Skap1|78473|src family associated phosphoprotein 1	BC145402|Skap1|78473|src family associated phosphoprotein 1	BC150764|Skap1|78473|src family associated phosphoprotein 1	BC171961|Skap1|78473|src family associated phosphoprotein 1
mm9_v1_chr6_+_149357407_149357610	1.40666	GGCAAGA	AK162699|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	NM_001112796|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	NM_009753|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK051379|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK220497|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK051718|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK082523|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK045975|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK038585|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK043650|Bicd1|12121|bicaudal D homolog 1 (Drosophila)
mm9_v1_chr1_+_60803231_60803317	1.371	GGCAAGA	NM_007642|Cd28|12487|CD28 antigen	AK041322|Cd28|12487|CD28 antigen	M34563|Cd28|12487|CD28 antigen	AK088021|Cd28|12487|CD28 antigen	AK030812|Cd28|12487|CD28 antigen	BC064058|Cd28|12487|CD28 antigen
mm9_v1_chr14_-_34260323_34260352	1.37033	GGCAAGA	AK139498|Mapk8|26419|mitogen-activated protein kinase 8	AK032486|Mapk8|26419|mitogen-activated protein kinase 8	AK043102|Mapk8|26419|mitogen-activated protein kinase 8	AK085745|Mapk8|26419|mitogen-activated protein kinase 8	AK030767|Mapk8|26419|mitogen-activated protein kinase 8	NM_016700|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr4_-_133742915_133743027	1.36753	GGCAAGA	AK085545|Ccdc21|70012|coiled-coil domain containing 21	BC008221|Ccdc21|70012|coiled-coil domain containing 21	AK030742|Ccdc21|70012|coiled-coil domain containing 21	AK141103|Ccdc21|70012|coiled-coil domain containing 21	AK010621|Ccdc21|70012|coiled-coil domain containing 21	NM_144527|Ccdc21|70012|coiled-coil domain containing 21
mm9_v1_chr3_+_88769733_88769733	1.35948	GGCAAGA	NM_138679|Ash1l|192195|ash1 (absent, small, or homeotic)-like (Drosophila)
mm9_v1_chr9_+_74918979_74919024	1.34905	GGCAAGA	AK032713|Myo5a|17918|myosin VA	NM_010864|Myo5a|17918|myosin VA
mm9_v1_chr10_-_25018912_25018969	1.31869	GGCAAGA	BC099487|Akap7|432442|A kinase (PRKA) anchor protein 7	NM_018747|Akap7|432442|A kinase (PRKA) anchor protein 7	AY301068|Akap7|432442|A kinase (PRKA) anchor protein 7
mm9_v1_chr18_+_37170365_37170627	1.31833	GGCAAGA	AK141960|Pcdha11|12942|protocadherin alpha 11	AK139436|Pcdha11|12942|protocadherin alpha 11	AK043705|Pcdha11|12942|protocadherin alpha 11	BC141349|Pcdha11|12942|protocadherin alpha 11	AY013758|Pcdha11|12942|protocadherin alpha 11	NM_009960|Pcdha11|12942|protocadherin alpha 11	AB008182|Pcdha11|12942|protocadherin alpha 11
mm9_v1_chr19_-_41922577_41922621	1.31688	GGCAAGA	BC034214|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	BC085510|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	AK081171|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	NM_177603|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2
mm9_v1_chr8_+_85387234_85387370	1.29052	GGCAAGA	AK032722|Rnf150|330812|ring finger protein 150	AK041412|Rnf150|330812|ring finger protein 150	NM_177378|Rnf150|330812|ring finger protein 150	AK220374|Rnf150|330812|ring finger protein 150
mm9_v1_chr1_-_158135155_158135155	1.28166	GGCAAGA	AK039197|Fam163a|329274|family with sequence similarity 163, member A	NM_177838|Fam163a|329274|family with sequence similarity 163, member A
mm9_v1_chr5_+_35104373_35104397	1.27444	GGCAAGA	AK042204|Htt|15194|huntingtin	NM_010414|Htt|15194|huntingtin
mm9_v1_chr7_+_4088622_4088685	1.25673	GGCAAGA	AK170629|Leng8|232798|leukocyte receptor cluster (LRC) member 8	AK034310|Leng8|232798|leukocyte receptor cluster (LRC) member 8	NM_172736|Leng8|232798|leukocyte receptor cluster (LRC) member 8	AK085304|Leng8|232798|leukocyte receptor cluster (LRC) member 8	AK158293|Leng8|232798|leukocyte receptor cluster (LRC) member 8	BC066768|Leng8|232798|leukocyte receptor cluster (LRC) member 8	BC042658|Leng8|232798|leukocyte receptor cluster (LRC) member 8	BC041775|Leng8|232798|leukocyte receptor cluster (LRC) member 8
mm9_v1_chr1_-_16509276_16509454	1.23784	GGCAAGA	AK031102|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)	AF459099|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)	AF459100|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)	AK171076|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)	NM_001111272|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)	NM_025303|Stau2|29819|staufen (RNA binding protein) homolog 2 (Drosophila)
mm9_v1_chr15_-_98438063_98438063	1.23661	GGCAAGA	AK147516|Adcy6|11512|adenylate cyclase 6	NM_007405|Adcy6|11512|adenylate cyclase 6
mm9_v1_chr7_-_140004777_140004878	1.23092	GGCAAGA	AK156629|Fam53b|77938|family with sequence similarity 53, member B	AK051299|Fam53b|77938|family with sequence similarity 53, member B	NM_212473|Fam53b|77938|family with sequence similarity 53, member B
mm9_v1_chr5_+_77269623_77269643	1.21298	GGCAAGA	AK030106|C530008M17Rik|320827|RIKEN cDNA C530008M17 gene	NM_001163793|C530008M17Rik|320827|RIKEN cDNA C530008M17 gene	AK015929|C530008M17Rik|320827|RIKEN cDNA C530008M17 gene
mm9_v1_chr13_+_94077988_94077988	1.21086	GGCAAGA	AY137385|Homer1|26556|homer homolog 1 (Drosophila)	NM_152134|Homer1|26556|homer homolog 1 (Drosophila)
mm9_v1_chr3_+_62142698_62142868	1.20761	GGCAAGA	NM_001081295|Arhgef26|622434|Rho guanine nucleotide exchange factor (GEF) 26
mm9_v1_chr8_-_4325051_4325113	1.20747	GGCAAGA	AK011870|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK080365|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK075818|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK034536|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	NM_010485|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)
mm9_v1_chr19_+_27397077_27397240	1.20419	GGCAAGA	BC046490|Kcnv2|240595|potassium channel, subfamily V, member 2	BC039042|Kcnv2|240595|potassium channel, subfamily V, member 2	NM_183179|Kcnv2|240595|potassium channel, subfamily V, member 2	AY238939|Kcnv2|240595|potassium channel, subfamily V, member 2
mm9_v1_chr19_+_27291507_27291624	1.19811	GGCAAGA	AK044683|Vldlr|22359|very low density lipoprotein receptor	AK076172|Vldlr|22359|very low density lipoprotein receptor	NM_001161420|Vldlr|22359|very low density lipoprotein receptor	NM_013703|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr4_-_132440285_132440436	1.18125	GGCAAGA	AK167087|Stx12|100226|syntaxin 12	AB019211|Stx12|100226|syntaxin 12	AK168753|Stx12|100226|syntaxin 12	AK078948|Stx12|100226|syntaxin 12	AK132618|Stx12|100226|syntaxin 12	AK167804|Stx12|100226|syntaxin 12	BC010669|Stx12|100226|syntaxin 12	AK076390|Stx12|100226|syntaxin 12	AK146735|Stx12|100226|syntaxin 12	AK077678|Stx12|100226|syntaxin 12	NM_133887|Stx12|100226|syntaxin 12	AK146544|Stx12|100226|syntaxin 12	AK170203|Stx12|100226|syntaxin 12
mm9_v1_chr1_+_169548381_169548439	1.17973	GGCAAGA	NM_001159731|Rxrg|20183|retinoid X receptor gamma	S62952|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr7_-_139978601_139978617	1.17761	GGCAAGA	BC035523|Fam53b|77938|family with sequence similarity 53, member B	AK020830|Fam53b|77938|family with sequence similarity 53, member B	NM_175268|Fam53b|77938|family with sequence similarity 53, member B
mm9_v1_chr3_+_82161952_82161996	1.17071	GGCAAGA	AK138540|Mtap9|213582|microtubule-associated protein 9	AK038737|Mtap9|213582|microtubule-associated protein 9	NM_001081230|Mtap9|213582|microtubule-associated protein 9
mm9_v1_chr7_-_71083734_71083823	1.16205	GGCAAGA	AJ245644|Klf13|50794|Kruppel-like factor 13	AJ275987|Klf13|50794|Kruppel-like factor 13	BC051557|Klf13|50794|Kruppel-like factor 13	AK155298|Klf13|50794|Kruppel-like factor 13	AF251796|Klf13|50794|Kruppel-like factor 13	NM_021366|Klf13|50794|Kruppel-like factor 13
mm9_v1_chr18_-_6516073_6516084	1.16201	GGCAAGA	AK148194|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	AF079765|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	NM_007935|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)
mm9_v1_chr3_-_116126932_116126949	1.15715	GGCAAGA	AK043956|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK052560|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK142294|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001080818|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001173553|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)
mm9_v1_chr2_+_127095942_127096024	1.15345	GGCAAGA	AK143699|Stard7|99138|START domain containing 7	NM_139308|Stard7|99138|START domain containing 7	BC017524|Stard7|99138|START domain containing 7	BC080747|Stard7|99138|START domain containing 7
mm9_v1_chr4_+_149656024_149656024	1.15316	GGCAAGA	NM_001085492|Rere|68703|arginine glutamic acid dipeptide (RE) repeats
mm9_v1_chr9_+_31923720_31923720	1.15023	GGCAAGA	NM_001195632|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr16_-_4789869_4789937	1.14281	GGCAAGA	AK017480|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK005157|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	BC004063|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK149939|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK150219|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK051560|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK031705|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	NM_025670|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene
mm9_v1_chrX_+_99044723_99044723	1.14269	GGCAAGA	AK142977|Nhsl2|100042480|NHS-like 2	NM_001163610|Nhsl2|100042480|NHS-like 2
mm9_v1_chr14_+_32064648_32064674	1.13353	GGCAAGA	AK079374|Bap1|104416|Brca1 associated protein 1	AK170576|Bap1|104416|Brca1 associated protein 1	AK171561|Bap1|104416|Brca1 associated protein 1	NM_027088|Bap1|104416|Brca1 associated protein 1
mm9_v1_chr16_+_22892112_22892117	1.12728	GGCAAGA	NM_013465|Ahsg|11625|alpha-2-HS-glycoprotein	AK149474|Ahsg|11625|alpha-2-HS-glycoprotein	AK149479|Ahsg|11625|alpha-2-HS-glycoprotein	AK167709|Ahsg|11625|alpha-2-HS-glycoprotein	AK133523|Ahsg|11625|alpha-2-HS-glycoprotein
mm9_v1_chr14_-_70553597_70553617	1.12725	GGCAAGA	AK050238|2610301G19Rik|219158|RIKEN cDNA 2610301G19 gene	NM_146055|2610301G19Rik|219158|RIKEN cDNA 2610301G19 gene	BC021475|2610301G19Rik|219158|RIKEN cDNA 2610301G19 gene
mm9_v1_chr1_-_167390568_167390623	1.11619	GGCAAGA	NM_028759|Dcaf6|74106|DDB1 and CUL4 associated factor 6
mm9_v1_chr18_+_35886642_35886642	1.10846	GGCAAGA	AK162297|1700066B19Rik|73449|RIKEN cDNA 1700066B19 gene	NM_001033168|1700066B19Rik|73449|RIKEN cDNA 1700066B19 gene
mm9_v1_chr12_-_85791897_85791926	1.08917	GGCAAGA	AF297860|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	NM_134042|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	AK164366|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	AK033587|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1
mm9_v1_chr9_-_89517823_89517962	1.06771	GGCAAGA	AF529169|AF529169|209743|cDNA sequence AF529169	NM_153509|AF529169|209743|cDNA sequence AF529169	AK035830|AF529169|209743|cDNA sequence AF529169
mm9_v1_chr11_+_87405628_87405720	1.06754	GGCAAGA	AF262986|Mtmr4|170749|myotubularin related protein 4	NM_133215|Mtmr4|170749|myotubularin related protein 4	BC058091|Mtmr4|170749|myotubularin related protein 4	BC058364|Mtmr4|170749|myotubularin related protein 4
mm9_v1_chr10_+_84218792_84218938	1.0576	GGCAAGA	NM_001024918|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AK034131|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AK090309|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AY102010|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AY342003|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AB086957|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)
mm9_v1_chr3_+_103379203_103379300	1.01741	GGCAAGA	NM_018800|Syt6|54524|synaptotagmin VI	BC050760|Syt6|54524|synaptotagmin VI	AB026803|Syt6|54524|synaptotagmin VI	AB026809|Syt6|54524|synaptotagmin VI	AB026810|Syt6|54524|synaptotagmin VI
mm9_v1_chrX_+_45265614_45265652	1.01707	GGCAAGA	AK047906|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK035315|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK041963|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK044320|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK138269|Ocrl|320634|oculocerebrorenal syndrome of Lowe	BC068146|Ocrl|320634|oculocerebrorenal syndrome of Lowe	NM_177215|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK028306|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK044488|Ocrl|320634|oculocerebrorenal syndrome of Lowe
mm9_v1_chr2_-_113839354_113839354	0.991467	GGCAAGA	BC058595|Gjd2|14617|gap junction protein, delta 2	NM_010290|Gjd2|14617|gap junction protein, delta 2
mm9_v1_chr4_+_33069972_33070146	0.973852	GGCAAGA	NM_027491|Rragd|52187|Ras-related GTP binding D	AF490406|Rragd|52187|Ras-related GTP binding D
mm9_v1_chr2_-_120178819_120178881	0.973208	GGCAAGA	BC007479|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281050|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281051|Vps39|269338|vacuolar protein sorting 39 (yeast)	AB028844|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK141424|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK038824|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK042253|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK154103|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK170831|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK171008|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK159889|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK160109|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK084743|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_147153|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_178851|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK140041|Vps39|269338|vacuolar protein sorting 39 (yeast)
mm9_v1_chr16_-_92321652_92321685	0.972369	GGCAAGA	AK029653|4930563D23Rik|75328|RIKEN cDNA 4930563D23 gene	BC147584|4930563D23Rik|75328|RIKEN cDNA 4930563D23 gene	BC147622|4930563D23Rik|75328|RIKEN cDNA 4930563D23 gene	AK016199|4930563D23Rik|75328|RIKEN cDNA 4930563D23 gene	NM_029252|4930563D23Rik|75328|RIKEN cDNA 4930563D23 gene
mm9_v1_chr11_-_105805442_105805573	0.966729	GGCAAGA	AK169711|Cyb561|13056|cytochrome b-561	AK014395|Cyb561|13056|cytochrome b-561	NM_007805|Cyb561|13056|cytochrome b-561	U16297|Cyb561|13056|cytochrome b-561	BC006732|Cyb561|13056|cytochrome b-561	AK158978|Cyb561|13056|cytochrome b-561
mm9_v1_chr10_-_13194201_13194201	0.958969	GGCAAGA	BC012871|Phactr2|215789|phosphatase and actin regulator 2	NM_001195065|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr2_-_58177217_58177217	0.955242	GGCAAGA	AK049089|Acvr1c|269275|activin A receptor, type IC	NM_001033369|Acvr1c|269275|activin A receptor, type IC
mm9_v1_chr3_-_30868320_30868353	0.953644	GGCAAGA	BC132533|Phc3|241915|polyhomeotic-like 3 (Drosophila)	BC145123|Phc3|241915|polyhomeotic-like 3 (Drosophila)	BC145124|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AJ414610|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK037348|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK087339|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK166208|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK166296|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165954|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165955|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165956|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_153421|Phc3|241915|polyhomeotic-like 3 (Drosophila)
mm9_v1_chr8_+_26750755_26750755	0.942584	GGCAAGA	NM_001081269|Whsc1l1|234135|Wolf-Hirschhorn syndrome candidate 1-like 1 (human)
mm9_v1_chr11_-_106054817_106054916	0.929995	GGCAAGA	BC058517|Strada|72149|STE20-related kinase adaptor alpha	AK031715|Strada|72149|STE20-related kinase adaptor alpha	AK011451|Strada|72149|STE20-related kinase adaptor alpha	NM_028126|Strada|72149|STE20-related kinase adaptor alpha	AY341872|Strada|72149|STE20-related kinase adaptor alpha	AY341878|Strada|72149|STE20-related kinase adaptor alpha	AK031290|Strada|72149|STE20-related kinase adaptor alpha	AK138358|Strada|72149|STE20-related kinase adaptor alpha
mm9_v1_chr4_+_155068566_155068580	0.915966	GGCAAGA	AK047240|B930041F14Rik|230991|RIKEN cDNA B930041F14 gene	NM_178699|B930041F14Rik|230991|RIKEN cDNA B930041F14 gene
mm9_v1_chr11_+_72861327_72861399	0.910366	GGCAAGA	NM_025818|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK163780|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK017496|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK020130|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK165317|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK004766|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK033682|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153152|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153241|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC118943|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK011450|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC098495|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene
mm9_v1_chr19_-_7015682_7015704	0.90463	GGCAAGA	NM_001177360|Gpr137|107173|G protein-coupled receptor 137	NM_207220|Gpr137|107173|G protein-coupled receptor 137
mm9_v1_chr19_-_7016916_7016939	0.902863	GGCAAGA	AK143450|Gpr137|107173|G protein-coupled receptor 137	NM_001177361|Gpr137|107173|G protein-coupled receptor 137
mm9_v1_chr5_-_138596915_138596971	0.896702	GGCAAGA	BC052453|Zfp113|56314|zinc finger protein 113	BC054525|Zfp113|56314|zinc finger protein 113	BC056991|Zfp113|56314|zinc finger protein 113	AF167320|Zfp113|56314|zinc finger protein 113	AK076349|Zfp113|56314|zinc finger protein 113	AK220556|Zfp113|56314|zinc finger protein 113	NM_019747|Zfp113|56314|zinc finger protein 113
mm9_v1_chr2_-_35056582_35056639	0.871738	GGCAAGA	AK160859|Rab14|68365|RAB14, member RAS oncogene family	NM_026697|Rab14|68365|RAB14, member RAS oncogene family
mm9_v1_chr18_+_89366818_89366986	0.868747	GGCAAGA	NM_001039149|Cd226|225825|CD226 antigen	NM_178687|Cd226|225825|CD226 antigen	BC132422|Cd226|225825|CD226 antigen	BC138769|Cd226|225825|CD226 antigen	BC145410|Cd226|225825|CD226 antigen	BC145411|Cd226|225825|CD226 antigen	BC051526|Cd226|225825|CD226 antigen	AK140349|Cd226|225825|CD226 antigen	AF416980|Cd226|225825|CD226 antigen	AF421198|Cd226|225825|CD226 antigen	AF421199|Cd226|225825|CD226 antigen	AF421200|Cd226|225825|CD226 antigen
mm9_v1_chr10_-_112365976_112366087	0.836252	GGCAAGA	AK014824|Atxn7l3b|382423|ataxin 7-like 3B	BC058561|Atxn7l3b|382423|ataxin 7-like 3B	BC047210|Atxn7l3b|382423|ataxin 7-like 3B	BC079579|Atxn7l3b|382423|ataxin 7-like 3B	BC094390|Atxn7l3b|382423|ataxin 7-like 3B	BC030168|Atxn7l3b|382423|ataxin 7-like 3B	AK003631|Atxn7l3b|382423|ataxin 7-like 3B	AK150316|Atxn7l3b|382423|ataxin 7-like 3B	AK135540|Atxn7l3b|382423|ataxin 7-like 3B	AK011696|Atxn7l3b|382423|ataxin 7-like 3B	AK009409|Atxn7l3b|382423|ataxin 7-like 3B	NM_001033474|Atxn7l3b|382423|ataxin 7-like 3B
mm9_v1_chr11_+_79404713_79404722	0.82568	GGCAAGA	AK046734|Rab11fip4|268451|RAB11 family interacting protein 4 (class II)	NM_175543|Rab11fip4|268451|RAB11 family interacting protein 4 (class II)
mm9_v1_chr7_-_85722668_85722860	0.81121	GGCAAGA	AY336094|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	NM_008746|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	NM_182809|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	BC139764|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	AF035399|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	AF035400|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3
mm9_v1_chr1_+_169528492_169528646	0.807006	GGCAAGA	NM_009107|Rxrg|20183|retinoid X receptor gamma	BC058401|Rxrg|20183|retinoid X receptor gamma	S62948|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr5_+_31014229_31014273	0.806118	GGCAAGA	AK044866|Dpysl5|65254|dihydropyrimidinase-like 5	BC065054|Dpysl5|65254|dihydropyrimidinase-like 5	NM_023047|Dpysl5|65254|dihydropyrimidinase-like 5	BC103789|Dpysl5|65254|dihydropyrimidinase-like 5
mm9_v1_chr19_+_38598686_38598698	0.802532	GGCAAGA	AB076247|Plce1|74055|phospholipase C, epsilon 1	NM_019588|Plce1|74055|phospholipase C, epsilon 1	BC138349|Plce1|74055|phospholipase C, epsilon 1	BC138350|Plce1|74055|phospholipase C, epsilon 1	BC145246|Plce1|74055|phospholipase C, epsilon 1
mm9_v1_chr1_+_196446006_196446022	0.794417	GGCAAGA	NM_008882|Plxna2|18845|plexin A2
mm9_v1_chr6_-_53018566_53018625	0.784405	GGCAAGA	AK043767|Jazf1|231986|JAZF zinc finger 1	AK050474|Jazf1|231986|JAZF zinc finger 1	NM_173406|Jazf1|231986|JAZF zinc finger 1
mm9_v1_chr7_+_107855215_107855319	0.778185	GGCAAGA	BC079886|Fam168a|319604|family with sequence similarity 168, member A	NM_178764|Fam168a|319604|family with sequence similarity 168, member A	AK043356|Fam168a|319604|family with sequence similarity 168, member A	AK047153|Fam168a|319604|family with sequence similarity 168, member A	AK048559|Fam168a|319604|family with sequence similarity 168, member A	AK051453|Fam168a|319604|family with sequence similarity 168, member A	AK084931|Fam168a|319604|family with sequence similarity 168, member A	AK137424|Fam168a|319604|family with sequence similarity 168, member A
mm9_v1_chr4_+_125168074_125168079	0.765492	GGCAAGA	NM_001081097|Grik3|14807|glutamate receptor, ionotropic, kainate 3	BC118004|Grik3|14807|glutamate receptor, ionotropic, kainate 3
mm9_v1_chr14_-_66899764_66899954	0.755137	GGCAAGA	AK158980|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	AK054002|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	AK150105|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	AK041878|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	AK088696|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	NM_001162365|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	NM_172498|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta
mm9_v1_chr4_+_135728188_135728308	0.736798	GGCAAGA	AK087452|E2f2|242705|E2F transcription factor 2	NM_177733|E2f2|242705|E2F transcription factor 2
mm9_v1_chr9_+_71063591_71063595	0.726341	GGCAAGA	NM_009022|Aldh1a2|19378|aldehyde dehydrogenase family 1, subfamily A2
mm9_v1_chr10_-_13108775_13108775	0.720125	GGCAAGA	AK139466|Phactr2|215789|phosphatase and actin regulator 2	NM_001195066|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr12_-_5382487_5382487	0.716164	GGCAAGA	BC065168|Klhl29|208439|kelch-like 29 (Drosophila)	NM_001164493|Klhl29|208439|kelch-like 29 (Drosophila)
mm9_v1_chr2_+_173563060_173563229	0.706614	GGCAAGA	BC048231|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	NM_019806|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	BC057123|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK050632|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK081908|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AF115504|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK160925|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK172080|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chr12_-_17183693_17183693	0.704918	GGCAAGA	NM_201531|Kcnf1|382571|potassium voltage-gated channel, subfamily F, member 1
mm9_v1_chr1_+_91351373_91351428	0.70241	GGCAAGA	AK147503|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	NM_001037136|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	NM_178119|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	AK046523|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	AK129289|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm9_v1_chr12_+_56181474_56181576	0.699628	GGCAAGA	NM_011899|Srp54a|24067|signal recognition particle 54A	X16319|Srp54b|665155|signal recognition particle 54B	AK011928|Srp54a|24067|signal recognition particle 54A	BC019683|Srp54a|24067|signal recognition particle 54A
mm9_v1_chr8_-_125222837_125223008	0.696926	GGCAAGA	BC141396|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	BC151156|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AF038029|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_009824|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr12_+_56256326_56256400	0.691422	GGCAAGA	NM_011899|Srp54a|24067|signal recognition particle 54A	X16319|Srp54b|665155|signal recognition particle 54B	AK011928|Srp54a|24067|signal recognition particle 54A	AK010716|Srp54b|665155|signal recognition particle 54B	BC019683|Srp54a|24067|signal recognition particle 54A	AK090018|Srp54c|100101806|signal recognition particle 54C
mm9_v1_chr1_-_82583400_82583423	0.689878	GGCAAGA	AK164732|Col4a4|12829|collagen, type IV, alpha 4	NM_007735|Col4a4|12829|collagen, type IV, alpha 4
mm9_v1_chr14_-_66832383_66832388	0.689107	GGCAAGA	BC137704|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	BC144849|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	NM_001162366|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta
mm9_v1_chr10_+_84300892_84300904	0.686353	GGCAAGA	AB089184|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AK016791|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	NM_027689|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	BC138719|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	BC138720|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)
mm9_v1_chr1_-_132612309_132612397	0.684998	GGCAAGA	X98847|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	BC051014|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	BC018418|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	AK146744|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	NM_008825|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
mm9_v1_chrX_-_71070284_71070317	0.679929	GGCAAGA	AK046101|Pdzd4|245469|PDZ domain containing 4	NM_001029868|Pdzd4|245469|PDZ domain containing 4
mm9_v1_chr1_-_54251877_54252011	0.671596	GGCAAGA	AK042922|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_001001883|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_172655|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	AK047602|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm9_v1_chr19_+_4510471_4510550	0.666492	GGCAAGA	NM_001162946|Pcx|18563|pyruvate carboxylase	AK170596|Pcx|18563|pyruvate carboxylase	AK170871|Pcx|18563|pyruvate carboxylase	AK148328|Pcx|18563|pyruvate carboxylase	BC055030|Pcx|18563|pyruvate carboxylase	AK128927|Pcx|18563|pyruvate carboxylase	AK172320|Pcx|18563|pyruvate carboxylase
mm9_v1_chr15_+_25772997_25773018	0.6618	GGCAAGA	NM_001034851|Fam134b|66270|family with sequence similarity 134, member B
mm9_v1_chr9_-_53475610_53475616	0.651713	GGCAAGA	AK031955|Cul5|75717|cullin 5	NM_001161618|Cul5|75717|cullin 5	NM_027807|Cul5|75717|cullin 5
mm9_v1_chr5_-_87061409_87061448	0.645439	GGCAAGA	AK029032|Tmprss11f|243083|transmembrane protease, serine 11f	AK028587|Tmprss11f|243083|transmembrane protease, serine 11f	AK028447|Tmprss11f|243083|transmembrane protease, serine 11f	AK036957|Tmprss11f|243083|transmembrane protease, serine 11f	NM_178730|Tmprss11f|243083|transmembrane protease, serine 11f
mm9_v1_chr19_-_57193391_57193513	0.628297	GGCAAGA	AK078723|Ablim1|226251|actin-binding LIM protein 1	AK165766|Ablim1|226251|actin-binding LIM protein 1	AK172605|Ablim1|226251|actin-binding LIM protein 1	AF404776|Ablim1|226251|actin-binding LIM protein 1	NM_001103178|Ablim1|226251|actin-binding LIM protein 1	AK008893|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr18_+_37249789_37249789	0.624503	GGCAAGA	AY013768|Pcdhac1|353236|protocadherin alpha subfamily C, 1	NM_001003671|Pcdhac1|353236|protocadherin alpha subfamily C, 1
mm9_v1_chr19_-_7015923_7016010	0.619203	GGCAAGA	BC048078|Gpr137|107173|G protein-coupled receptor 137	AK170308|Gpr137|107173|G protein-coupled receptor 137	NM_001177362|Gpr137|107173|G protein-coupled receptor 137
mm9_v1_chr19_-_3575695_3575758	0.617788	GGCAAGA	AK129392|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK088526|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	BC008529|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK035236|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK015925|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK018652|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_001164159|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_028999|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_029456|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3
mm9_v1_chr17_+_35960291_35960382	0.617464	GGCAAGA	BC004647|Flot1|14251|flotillin 1	AY167925|Flot1|14251|flotillin 1	NM_008027|Flot1|14251|flotillin 1	U90435|Flot1|14251|flotillin 1	AK150827|Flot1|14251|flotillin 1	AK167323|Flot1|14251|flotillin 1
mm9_v1_chr9_-_95412264_95412414	0.609731	GGCAAGA	BC031497|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	BC080699|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	AK011588|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	BC059732|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	AK011796|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	AK029898|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	BC068265|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	NM_001114977|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	NM_026476|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene
mm9_v1_chr12_-_86039703_86039802	0.606575	GGCAAGA	AY993933|Tmem90a|627191|transmembrane protein 90a	AK140195|Tmem90a|627191|transmembrane protein 90a	NM_001033334|Tmem90a|627191|transmembrane protein 90a	AY993934|Tmem90a|627191|transmembrane protein 90a
mm9_v1_chr16_-_17144301_17144301	0.605962	GGCAAGA	BC050881|Ccdc116|76872|coiled-coil domain containing 116	NM_001164606|Ccdc116|76872|coiled-coil domain containing 116
mm9_v1_chr12_+_56331411_56331464	0.600587	GGCAAGA	AK146826|Srp54c|100101806|signal recognition particle 54C	AK010716|Srp54b|665155|signal recognition particle 54B	BC005543|Srp54c|100101806|signal recognition particle 54C	AK090018|Srp54c|100101806|signal recognition particle 54C	NM_001100110|Srp54c|100101806|signal recognition particle 54C
mm9_v1_chr10_-_13043959_13044096	0.590778	GGCAAGA	BC130264|Phactr2|215789|phosphatase and actin regulator 2	AK142930|Phactr2|215789|phosphatase and actin regulator 2	NM_001033257|Phactr2|215789|phosphatase and actin regulator 2	NM_001195096|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr9_-_99469275_99469317	0.583603	GGCAAGA	BC038866|Armc8|74125|armadillo repeat containing 8	AK004793|Armc8|74125|armadillo repeat containing 8	NM_001166138|Armc8|74125|armadillo repeat containing 8	NM_028768|Armc8|74125|armadillo repeat containing 8
mm9_v1_chr8_-_26311823_26311983	0.579484	GGCAAGA	BC125389|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	BC145709|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK037910|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK138513|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK046384|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AY177412|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AY177413|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	NM_177089|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	NM_199323|Tacc1|320165|transforming, acidic coiled-coil containing protein 1
mm9_v1_chr7_-_36539369_36539472	0.57899	GGCAAGA	BC059897|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK045758|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031722|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	BC050065|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK033395|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AF538322|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031345|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK034217|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	NM_178704|Dpy19l3|233115|dpy-19-like 3 (C. elegans)
mm9_v1_chr8_-_127473082_127473245	0.570529	GGCAAGA	NM_053207|Egln1|112405|EGL nine homolog 1 (C. elegans)
mm9_v1_chr8_-_125201971_125202083	0.560237	GGCAAGA	AK033680|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AK041887|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_001109873|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_177289|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr6_+_37480172_37480192	0.559005	GGCAAGA	BC018333|Akr1d1|208665|aldo-keto reductase family 1, member D1	NM_145364|Akr1d1|208665|aldo-keto reductase family 1, member D1
mm9_v1_chr17_+_47767638_47767638	0.555276	GGCAAGA	BC060712|Usp49|224836|ubiquitin specific peptidase 49	NM_198421|Usp49|224836|ubiquitin specific peptidase 49
mm9_v1_chr7_+_134234872_134234963	0.552845	GGCAAGA	AK169672|AI467606|101602|expressed sequence AI467606	AK041954|AI467606|101602|expressed sequence AI467606	AK155213|AI467606|101602|expressed sequence AI467606	AK170238|AI467606|101602|expressed sequence AI467606	AK052739|AI467606|101602|expressed sequence AI467606	NM_178901|AI467606|101602|expressed sequence AI467606	AK168260|AI467606|101602|expressed sequence AI467606	BC038694|AI467606|101602|expressed sequence AI467606	BC064101|AI467606|101602|expressed sequence AI467606
mm9_v1_chr1_+_95240200_95240244	0.552273	GGCAAGA	AK129024|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	AK009342|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	AK162517|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	AK145136|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	BC013524|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	AF222867|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	NM_023200|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	AK009870|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7
mm9_v1_chr13_+_54167169_54167276	0.550493	GGCAAGA	AK012650|Sfxn1|14057|sideroflexin 1	NM_027324|Sfxn1|14057|sideroflexin 1	AF325260|Sfxn1|14057|sideroflexin 1	BC005743|Sfxn1|14057|sideroflexin 1	AK151110|Sfxn1|14057|sideroflexin 1
mm9_v1_chr11_-_103500187_103500193	0.549	GGCAAGA	BC048617|Lyzl6|69444|lysozyme-like 6	NM_027083|Lyzl6|69444|lysozyme-like 6	AK006279|Lyzl6|69444|lysozyme-like 6
mm9_v1_chr14_+_55713609_55713673	0.539757	GGCAAGA	NM_153083|Thtpa|105663|thiamine triphosphatase
mm9_v1_chr9_-_26837634_26837702	0.513326	GGCAAGA	AK155578|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	AK171154|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	BC049180|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	AK031589|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	NM_178027|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)
mm9_v1_chr14_-_58508974_58509153	0.509013	GGCAAGA	AK020965|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AY668951|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK170139|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK031184|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK139216|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK140182|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK049270|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK163174|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK017158|Zdhhc20|75965|zinc finger, DHHC domain containing 20	NM_029492|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK151840|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK170017|Zdhhc20|75965|zinc finger, DHHC domain containing 20	BC019536|Zdhhc20|75965|zinc finger, DHHC domain containing 20
mm9_v1_chr8_-_37676995_37677010	0.505908	GGCAAGA	AK162413|Dlc1|50768|deleted in liver cancer 1	NM_015802|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr18_-_84819337_84819486	0.497036	GGCAAGA	AK165500|Cndp1|338403|carnosine dipeptidase 1 (metallopeptidase M20 family)	BC043305|Cndp1|338403|carnosine dipeptidase 1 (metallopeptidase M20 family)	AK165706|Cndp1|338403|carnosine dipeptidase 1 (metallopeptidase M20 family)	AK085308|Cndp1|338403|carnosine dipeptidase 1 (metallopeptidase M20 family)	NM_177450|Cndp1|338403|carnosine dipeptidase 1 (metallopeptidase M20 family)
mm9_v1_chr6_-_118147735_118147761	0.492141	GGCAAGA	BC059012|Ret|19713|ret proto-oncogene	NM_001080780|Ret|19713|ret proto-oncogene	NM_009050|Ret|19713|ret proto-oncogene
mm9_v1_chr3_-_107499460_107499466	0.491102	GGCAAGA	NM_145542|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1
mm9_v1_chr5_+_45911467_45911626	0.484528	GGCAAGA	NM_025895|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AK007855|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AF318060|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AK154249|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	BC024941|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AK003854|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AK005681|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AK201969|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)
mm9_v1_chrX_+_147778717_147778787	0.476503	GGCAAGA	AK030477|Fam120c|207375|family with sequence similarity 120, member C	AK086058|Fam120c|207375|family with sequence similarity 120, member C	AK156920|Fam120c|207375|family with sequence similarity 120, member C	AY150023|Fam120c|207375|family with sequence similarity 120, member C	AY150024|Fam120c|207375|family with sequence similarity 120, member C	BC137973|Fam120c|207375|family with sequence similarity 120, member C	BC171940|Fam120c|207375|family with sequence similarity 120, member C	NM_198105|Fam120c|207375|family with sequence similarity 120, member C	AK136727|Fam120c|207375|family with sequence similarity 120, member C	AK166381|Fam120c|207375|family with sequence similarity 120, member C
mm9_v1_chr13_-_46823191_46823231	0.474144	GGCAAGA	AK086847|Nup153|218210|nucleoporin 153	NM_175749|Nup153|218210|nucleoporin 153
mm9_v1_chr11_+_97223851_97223864	0.463767	GGCAAGA	AF424814|Socs7|192157|suppressor of cytokine signaling 7	NM_138657|Socs7|192157|suppressor of cytokine signaling 7
mm9_v1_chr18_-_75857207_75857349	0.462379	GGCAAGA	BC058104|Ctif|269037|CBP80/20-dependent translation initiation factor	NM_201354|Ctif|269037|CBP80/20-dependent translation initiation factor
mm9_v1_chr6_+_120786207_120786296	0.459073	GGCAAGA	AK171256|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK148007|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK031018|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK088417|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK143457|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK132774|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK047223|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	BC029016|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	NM_153516|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK165068|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK168833|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)
mm9_v1_chr7_+_130267398_130267398	0.451875	GGCAAGA	NM_144925|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr11_-_5849601_5849601	0.448746	GGCAAGA	L38990|Gck|103988|glucokinase	NM_010292|Gck|103988|glucokinase
mm9_v1_chr16_-_17144515_17144515	0.447627	GGCAAGA	AK015290|Ccdc116|76872|coiled-coil domain containing 116	NM_029779|Ccdc116|76872|coiled-coil domain containing 116
mm9_v1_chr12_-_105990160_105990320	0.439534	GGCAAGA	BC019805|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)	AF430845|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)	NM_148948|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)
mm9_v1_chr8_+_113245378_113245384	0.439281	GGCAAGA	BC060632|Mtss1l|244654|metastasis suppressor 1-like	NM_198625|Mtss1l|244654|metastasis suppressor 1-like
mm9_v1_chr4_+_114732112_114732131	0.436715	GGCAAGA	AK144164|Tal1|21349|T-cell acute lymphocytic leukemia 1	M59764|Tal1|21349|T-cell acute lymphocytic leukemia 1	NM_011527|Tal1|21349|T-cell acute lymphocytic leukemia 1
mm9_v1_chr4_+_128814102_128814307	0.432963	GGCAAGA	AK005096|Fndc5|384061|fibronectin type III domain containing 5	AJ401376|Fndc5|384061|fibronectin type III domain containing 5	BC109184|Fndc5|384061|fibronectin type III domain containing 5	NM_027402|Fndc5|384061|fibronectin type III domain containing 5	BC109183|Fndc5|384061|fibronectin type III domain containing 5
mm9_v1_chr5_+_93112460_93112460	0.428443	GGCAAGA	AF199421|Shroom3|27428|shroom family member 3	NM_015756|Shroom3|27428|shroom family member 3
mm9_v1_chr7_+_28018002_28018114	0.422699	GGCAAGA	NM_133770|Adck4|76889|aarF domain containing kinase 4	AK002619|Adck4|76889|aarF domain containing kinase 4
mm9_v1_chr2_+_122012007_122012007	0.422545	GGCAAGA	AK016695|4933406J08Rik|74401|RIKEN cDNA 4933406J08 gene	NM_028914|4933406J08Rik|74401|RIKEN cDNA 4933406J08 gene
mm9_v1_chr8_+_116963542_116963590	0.417633	GGCAAGA	NM_019573|Wwox|80707|WW domain-containing oxidoreductase
mm9_v1_chr11_+_3964839_3964931	0.416573	GGCAAGA	NM_001029937|Sec14l3|380683|SEC14-like 3 (S. cerevisiae)	BC138982|Sec14l3|380683|SEC14-like 3 (S. cerevisiae)	BC138985|Sec14l3|380683|SEC14-like 3 (S. cerevisiae)	BC145485|Sec14l3|380683|SEC14-like 3 (S. cerevisiae)
mm9_v1_chr1_+_184495137_184495191	0.403466	GGCAAGA	AK132449|Capn8|170725|calpain 8	NM_001145806|Capn8|170725|calpain 8	NM_130890|Capn8|170725|calpain 8	AB050202|Capn8|170725|calpain 8	AB050203|Capn8|170725|calpain 8	BC125504|Capn8|170725|calpain 8	BC125508|Capn8|170725|calpain 8	BC145055|Capn8|170725|calpain 8	AB061518|Capn8|170725|calpain 8	AB061519|Capn8|170725|calpain 8
mm9_v1_chr5_+_138526303_138526341	0.39126	GGCAAGA	NM_029869|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	NM_133906|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK036807|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK031759|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020355|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK154831|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020039|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK054323|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1
mm9_v1_chr7_+_126697853_126697853	0.38146	GGCAAGA	AK140827|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2	NM_001177977|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2
mm9_v1_chr1_-_71149409_71149545	0.373767	GGCAAGA	BC128370|Bard1|12021|BRCA1 associated RING domain 1	BC128371|Bard1|12021|BRCA1 associated RING domain 1	BC055362|Bard1|12021|BRCA1 associated RING domain 1	AF057157|Bard1|12021|BRCA1 associated RING domain 1	AK145528|Bard1|12021|BRCA1 associated RING domain 1	NM_007525|Bard1|12021|BRCA1 associated RING domain 1
mm9_v1_chr1_+_133724553_133724859	0.363264	GGCAAGA	BC096596|Slc41a1|98396|solute carrier family 41, member 1	AK089802|Slc41a1|98396|solute carrier family 41, member 1	NM_173865|Slc41a1|98396|solute carrier family 41, member 1	AK045861|Slc41a1|98396|solute carrier family 41, member 1	AK154819|Slc41a1|98396|solute carrier family 41, member 1	BC042724|Slc41a1|98396|solute carrier family 41, member 1	BC116280|Slc41a1|98396|solute carrier family 41, member 1	BC116281|Slc41a1|98396|solute carrier family 41, member 1	AK039371|Slc41a1|98396|solute carrier family 41, member 1
mm9_v1_chr11_+_84693721_84693889	0.347979	GGCAAGA	BC060115|Myo19|66196|myosin XIX	NM_025414|Myo19|66196|myosin XIX	AK080117|Myo19|66196|myosin XIX	AK053237|Myo19|66196|myosin XIX	AK053033|Myo19|66196|myosin XIX
mm9_v1_chr19_+_4594318_4594387	0.346043	GGCAAGA	NM_008797|Pcx|18563|pyruvate carboxylase	L09192|Pcx|18563|pyruvate carboxylase
mm9_v1_chr9_+_103207488_103207656	0.344512	GGCAAGA	AK085031|Topbp1|235559|topoisomerase (DNA) II binding protein 1	AK129104|Topbp1|235559|topoisomerase (DNA) II binding protein 1	AK084654|Topbp1|235559|topoisomerase (DNA) II binding protein 1	AK084869|Topbp1|235559|topoisomerase (DNA) II binding protein 1	BC049797|Topbp1|235559|topoisomerase (DNA) II binding protein 1	NM_176979|Topbp1|235559|topoisomerase (DNA) II binding protein 1
mm9_v1_chr8_-_38001686_38001686	0.337777	GGCAAGA	HM008381|Dlc1|50768|deleted in liver cancer 1	NM_001194940|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr2_-_58210162_58210168	0.33758	GGCAAGA	AK142396|Acvr1c|269275|activin A receptor, type IC	NM_001111030|Acvr1c|269275|activin A receptor, type IC
mm9_v1_chr12_+_81745188_81745226	0.334578	GGCAAGA	NM_026244|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9	AK090062|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9	AK080462|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9	BC072655|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9	AK008025|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9
mm9_v1_chr16_+_13109828_13109828	0.334286	GGCAAGA	AF189285|Ercc4|50505|excision repair cross-complementing rodent repair deficiency, complementation group 4	NM_015769|Ercc4|50505|excision repair cross-complementing rodent repair deficiency, complementation group 4
mm9_v1_chr8_-_37796104_37796107	0.328917	GGCAAGA	AK147539|Dlc1|50768|deleted in liver cancer 1	NM_001194941|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr11_+_3388229_3388301	0.321539	GGCAAGA	BC079556|Pla2g3|237625|phospholipase A2, group III	NM_172791|Pla2g3|237625|phospholipase A2, group III	AK033572|Pla2g3|237625|phospholipase A2, group III	AK081075|Pla2g3|237625|phospholipase A2, group III
mm9_v1_chr17_-_32171436_32171452	0.312913	GGCAAGA	AK016553|Hsf2bp|74377|heat shock transcription factor 2 binding protein	NM_028902|Hsf2bp|74377|heat shock transcription factor 2 binding protein
mm9_v1_chr9_+_113721698_113721717	0.308369	GGCAAGA	AK043551|Clasp2|76499|CLIP associating protein 2	AK148966|Clasp2|76499|CLIP associating protein 2	AK164326|Clasp2|76499|CLIP associating protein 2	NM_001081960|Clasp2|76499|CLIP associating protein 2	NM_029633|Clasp2|76499|CLIP associating protein 2	BC117963|Clasp2|76499|CLIP associating protein 2	BC117964|Clasp2|76499|CLIP associating protein 2	BC131791|Clasp2|76499|CLIP associating protein 2	BC131792|Clasp2|76499|CLIP associating protein 2	BC141415|Clasp2|76499|CLIP associating protein 2
mm9_v1_chr7_-_149846916_149846939	0.305123	GGCAAGA	NM_001122736|Igf2|16002|insulin-like growth factor 2
mm9_v1_chr7_+_104100014_104100062	0.303895	GGCAAGA	AK046799|Nars2|244141|asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	AK046801|Nars2|244141|asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	NM_153591|Nars2|244141|asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	AK138260|Nars2|244141|asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)
mm9_v1_chr1_+_187028043_187028086	0.297484	GGCAAGA	NM_001163754|Rab3gap2|98732|RAB3 GTPase activating protein subunit 2	AK157509|Rab3gap2|98732|RAB3 GTPase activating protein subunit 2
mm9_v1_chr1_+_123327625_123327651	0.293134	GGCAAGA	AK142302|Ccdc93|70829|coiled-coil domain containing 93	NM_001025156|Ccdc93|70829|coiled-coil domain containing 93	NM_029955|Ccdc93|70829|coiled-coil domain containing 93	AK082581|Ccdc93|70829|coiled-coil domain containing 93
mm9_v1_chr19_+_44637331_44637363	0.290739	GGCAAGA	AK154774|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	BC130013|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	NM_176958|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK084960|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK043636|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK141867|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor
mm9_v1_chr16_+_16896561_16896699	0.268477	GGCAAGA	AK016942|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)	NM_176833|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)	AK154192|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)	AK164964|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)
mm9_v1_chr3_-_9610062_9610137	0.262537	GGCAAGA	AF292939|Zfp704|170753|zinc finger protein 704	NM_133218|Zfp704|170753|zinc finger protein 704
mm9_v1_chr6_-_3714466_3714712	0.260763	GGCAAGA	AK162391|Calcr|12311|calcitonin receptor	U18542|Calcr|12311|calcitonin receptor	AK039161|Calcr|12311|calcitonin receptor	AK138275|Calcr|12311|calcitonin receptor	NM_007588|Calcr|12311|calcitonin receptor
mm9_v1_chr5_-_113592211_113592370	0.258996	GGCAAGA	BC147338|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene	BC147339|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene	AK041243|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene	AK171617|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene	NM_172884|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene	AK154484|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene
mm9_v1_chr15_-_102196701_102196763	0.254158	GGCAAGA	BC113150|Sp7|170574|Sp7 transcription factor 7	NM_130458|Sp7|170574|Sp7 transcription factor 7	AK032521|Sp7|170574|Sp7 transcription factor 7	AF184902|Sp7|170574|Sp7 transcription factor 7	AK076229|Sp7|170574|Sp7 transcription factor 7
mm9_v1_chr8_+_116159485_116159734	0.252622	GGCAAGA	NM_001048143|Mon1b|270096|MON1 homolog b (yeast)	AK157390|Mon1b|270096|MON1 homolog b (yeast)	NM_173015|Mon1b|270096|MON1 homolog b (yeast)	AK030288|Mon1b|270096|MON1 homolog b (yeast)
mm9_v1_chr19_-_43749362_43749370	0.252455	GGCAAGA	BC025908|Slc25a28|246696|solute carrier family 25, member 28	NM_145156|Slc25a28|246696|solute carrier family 25, member 28
mm9_v1_chr7_+_126705221_126705245	0.234204	GGCAAGA	AK057650|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2	NM_001177978|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2	NM_146197|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2	AK165353|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2	AK143757|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2	AK165401|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2	BC031140|Acsm2|233799|acyl-CoA synthetase medium-chain family member 2
mm9_v1_chr11_-_103206015_103206015	0.230938	GGCAAGA	AK046763|Arhgap27|544817|Rho GTPase activating protein 27	NM_133715|Arhgap27|544817|Rho GTPase activating protein 27
mm9_v1_chr5_+_33361386_33361464	0.225219	GGCAAGA	NM_011738|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm9_v1_chr7_-_149844708_149844708	0.221931	GGCAAGA	NM_010514|Igf2|16002|insulin-like growth factor 2
mm9_v1_chr9_-_76171352_76171416	0.218508	GGCAAGA	AY336084|Hcrtr2|387285|hypocretin (orexin) receptor 2	AY336085|Hcrtr2|387285|hypocretin (orexin) receptor 2	BC140957|Hcrtr2|387285|hypocretin (orexin) receptor 2	AK038551|Hcrtr2|387285|hypocretin (orexin) receptor 2	AK048781|Hcrtr2|387285|hypocretin (orexin) receptor 2	NM_198962|Hcrtr2|387285|hypocretin (orexin) receptor 2	AK079572|Hcrtr2|387285|hypocretin (orexin) receptor 2
mm9_v1_chr4_-_62095759_62095759	0.216686	GGCAAGA	AK017982|Rnf183|76072|ring finger protein 183	NM_153504|Rnf183|76072|ring finger protein 183
mm9_v1_chr13_-_107812106_107812216	0.215161	GGCAAGA	AK037037|Kif2a|16563|kinesin family member 2A	BC006803|Kif2a|16563|kinesin family member 2A	D12644|Kif2a|16563|kinesin family member 2A	NM_001145779|Kif2a|16563|kinesin family member 2A	NM_008442|Kif2a|16563|kinesin family member 2A
mm9_v1_chr7_+_134376800_134376956	0.214282	GGCAAGA	AK148378|Zfp553|233887|zinc finger protein 553	BC026401|Zfp553|233887|zinc finger protein 553	NM_146201|Zfp553|233887|zinc finger protein 553
mm9_v1_chr4_-_41450064_41450152	0.209615	GGCAAGA	BC137640|AI464131|329828|expressed sequence AI464131	BC140956|AI464131|329828|expressed sequence AI464131	AK173117|AI464131|329828|expressed sequence AI464131	NM_001085515|AI464131|329828|expressed sequence AI464131
mm9_v1_chr10_-_30562434_30562625	0.208871	GGCAAGA	AK031506|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	AB093589|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	BC103575|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	BC105651|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	BC103576|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	BC105652|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	AF173902|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	AF232240|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	AK158000|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	AF172287|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	AJ271867|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2	NM_013904|Hey2|15214|hairy/enhancer-of-split related with YRPW motif 2
mm9_v1_chr1_-_13364092_13364163	0.207161	GGCAAGA	AF000582|Ncoa2|17978|nuclear receptor coactivator 2	AK048972|Ncoa2|17978|nuclear receptor coactivator 2	AK087443|Ncoa2|17978|nuclear receptor coactivator 2	U39060|Ncoa2|17978|nuclear receptor coactivator 2	AK052117|Ncoa2|17978|nuclear receptor coactivator 2	NM_001077695|Ncoa2|17978|nuclear receptor coactivator 2	NM_008678|Ncoa2|17978|nuclear receptor coactivator 2
mm9_v1_chr7_+_137720997_137721002	0.204073	GGCAAGA	AY177410|Tacc2|57752|transforming, acidic coiled-coil containing protein 2	NM_001004468|Tacc2|57752|transforming, acidic coiled-coil containing protein 2	NM_206856|Tacc2|57752|transforming, acidic coiled-coil containing protein 2	BC109016|Tacc2|57752|transforming, acidic coiled-coil containing protein 2
mm9_v1_chr13_+_44826121_44826271	0.200199	GGCAAGA	D31967|Jarid2|16468|jumonji, AT rich interactive domain 2	BC052444|Jarid2|16468|jumonji, AT rich interactive domain 2	BC060695|Jarid2|16468|jumonji, AT rich interactive domain 2	NM_021878|Jarid2|16468|jumonji, AT rich interactive domain 2
mm9_v1_chr12_+_87087488_87087539	0.199851	GGCAAGA	AY260574|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AY260575|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AY260576|Mfsd7c|217721|major facilitator superfamily domain containing 7C	BC011209|Mfsd7c|217721|major facilitator superfamily domain containing 7C	NM_145447|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AK145696|Mfsd7c|217721|major facilitator superfamily domain containing 7C
mm9_v1_chrX_-_45947549_45947628	0.194885	GGCAAGA	AK141491|Zfp280c|208968|zinc finger protein 280C	NM_001166648|Zfp280c|208968|zinc finger protein 280C	AK044137|Zfp280c|208968|zinc finger protein 280C	AK129399|Zfp280c|208968|zinc finger protein 280C	NM_001166649|Zfp280c|208968|zinc finger protein 280C
mm9_v1_chr14_-_96918064_96918252	0.192607	GGCAAGA	AK031932|Klhl1|93688|kelch-like 1 (Drosophila)	AF252281|Klhl1|93688|kelch-like 1 (Drosophila)	BC094584|Klhl1|93688|kelch-like 1 (Drosophila)	NM_053105|Klhl1|93688|kelch-like 1 (Drosophila)
mm9_v1_chr8_-_81345034_81345050	0.189975	GGCAAGA	AK158236|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_001191004|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_030145|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr16_-_32868355_32868453	0.189001	GGCAAGA	BC057307|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK042428|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK170223|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK122221|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK030368|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	BC060601|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	NM_172615|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK170002|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK171583|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	BC067390|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene
mm9_v1_chr9_-_18278002_18278002	0.181557	GGCAAGA	NM_028935|Zfp558|72230|zinc finger protein 558
mm9_v1_chr15_-_103070227_103070257	0.178324	GGCAAGA	BC004707|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001076789|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr11_+_70658261_70658270	0.165271	GGCAAGA	AK134587|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	NM_019400|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1
mm9_v1_chr11_+_43342241_43342329	0.163366	GGCAAGA	AK143205|Ccnjl|380694|cyclin J-like	NM_001045530|Ccnjl|380694|cyclin J-like
mm9_v1_chr3_+_58380577_58380636	0.150096	GGCAAGA	NM_001040396|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	AK017528|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	AK032838|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	AK047958|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	BC132453|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	BC138424|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	AK013022|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	BC019970|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	AK146778|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene
mm9_v1_chr13_-_18085124_18085192	0.149028	GGCAAGA	AK019184|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	AK076034|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	BC083111|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	AK011805|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	AK011852|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	BC020123|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	AK030455|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	AK151981|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	BC037189|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	BC048453|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	AK005425|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	AK011774|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene	NM_025904|1600012F09Rik|67008|RIKEN cDNA 1600012F09 gene
mm9_v1_chr6_-_86619001_86619180	0.146742	GGCAAGA	CT010233|Mxd1|17119|MAX dimerization protein 1	L38926|Mxd1|17119|MAX dimerization protein 1	X83106|Mxd1|17119|MAX dimerization protein 1	BC034860|Mxd1|17119|MAX dimerization protein 1	U20614|Mxd1|17119|MAX dimerization protein 1	AK036504|Mxd1|17119|MAX dimerization protein 1	AK151882|Mxd1|17119|MAX dimerization protein 1	AK153303|Mxd1|17119|MAX dimerization protein 1	AK151114|Mxd1|17119|MAX dimerization protein 1	AK151014|Mxd1|17119|MAX dimerization protein 1	AK151305|Mxd1|17119|MAX dimerization protein 1	NM_010751|Mxd1|17119|MAX dimerization protein 1
mm9_v1_chr19_-_7416286_7416363	0.137483	GGCAAGA	BC058556|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	AK172444|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080388|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080389|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_007928|Mark2|13728|MAP/microtubule affinity-regulating kinase 2
mm9_v1_chr1_+_95757920_95757920	0.137158	GGCAAGA	AK144526|Gal3st2|381334|galactose-3-O-sulfotransferase 2	AK165692|Gal3st2|381334|galactose-3-O-sulfotransferase 2	NM_199366|Gal3st2|381334|galactose-3-O-sulfotransferase 2
mm9_v1_chr18_+_37649118_37649272	0.125094	GGCAAGA	AK140341|Pcdhb18|93889|protocadherin beta 18	NM_053143|Pcdhb18|93889|protocadherin beta 18	BC099958|Pcdhb18|93889|protocadherin beta 18	AY013779|Pcdhb18|93889|protocadherin beta 18
mm9_v1_chr2_+_154262114_154262265	0.11528	GGCAAGA	AK148027|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_009823|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_172860|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK040403|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	DQ213025|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	BC064679|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK049206|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)
mm9_v1_chr4_+_137150067_137150162	0.114595	GGCAAGA	AK166158|Usp48|170707|ubiquitin specific peptidase 48	NM_130879|Usp48|170707|ubiquitin specific peptidase 48	AK220190|Usp48|170707|ubiquitin specific peptidase 48	BC021769|Usp48|170707|ubiquitin specific peptidase 48	AK052297|Usp48|170707|ubiquitin specific peptidase 48
mm9_v1_chr4_-_66065499_66065516	0.110925	GGCAAGA	AK041160|Astn2|56079|astrotactin 2	AK047058|Astn2|56079|astrotactin 2	AK051472|Astn2|56079|astrotactin 2	NM_019514|Astn2|56079|astrotactin 2	NM_207109|Astn2|56079|astrotactin 2
mm9_v1_chr5_-_92512683_92512782	0.110213	GGCAAGA	AF145285|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	U65313|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151965|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK152792|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK172256|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC048176|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK145697|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK076117|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK167186|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080795|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_011816|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr9_-_43013831_43013943	0.110149	GGCAAGA	Z18537|Pou2f3|18988|POU domain, class 2, transcription factor 3	L14677|Pou2f3|18988|POU domain, class 2, transcription factor 3	NM_011139|Pou2f3|18988|POU domain, class 2, transcription factor 3
mm9_v1_chr6_-_3713622_3713622	0.109677	GGCAAGA	AK133983|Calcr|12311|calcitonin receptor	NM_001042725|Calcr|12311|calcitonin receptor
mm9_v1_chr15_+_102751533_102751620	0.103408	GGCAAGA	AY349616|Hoxc13|15422|homeobox C13	AF193796|Hoxc13|15422|homeobox C13	NM_010464|Hoxc13|15422|homeobox C13
mm9_v1_chrX_+_148578716_148578819	0.101547	GGCAAGA	AB275281|Iqsec2|245666|IQ motif and Sec7 domain 2	NM_001114664|Iqsec2|245666|IQ motif and Sec7 domain 2	AY451401|Iqsec2|245666|IQ motif and Sec7 domain 2
mm9_v1_chr12_+_4924157_4924219	0.0928175	GGCAAGA	AK161170|Atad2b|320817|ATPase family, AAA domain containing 2B	NM_001099628|Atad2b|320817|ATPase family, AAA domain containing 2B	AK080580|Atad2b|320817|ATPase family, AAA domain containing 2B	AK085232|Atad2b|320817|ATPase family, AAA domain containing 2B
mm9_v1_chr13_-_107726930_107727002	0.0918628	GGCAAGA	BC031900|Ipo11|76582|importin 11	BC029746|Ipo11|76582|importin 11	NM_029665|Ipo11|76582|importin 11
mm9_v1_chr12_+_111723922_111723992	0.0907381	GGCAAGA	AK031584|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081457|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081458|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_012023|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	BC003979|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr17_-_25410371_25410398	0.0833318	GGCAAGA	NM_001177610|Ube2i|22196|ubiquitin-conjugating enzyme E2I
mm9_v1_chr5_-_97821348_97821397	0.0813249	GGCAAGA	AK135863|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	BC139104|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	BC145776|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	NM_001033191|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	AK133248|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit	EU192141|Naa11|97243|N(alpha)-acetyltransferase 11, NatA catalytic subunit
mm9_v1_chr12_+_103214174_103214251	0.0793481	GGCAAGA	AK147746|Cpsf2|51786|cleavage and polyadenylation specific factor 2	NM_016856|Cpsf2|51786|cleavage and polyadenylation specific factor 2	AF012822|Cpsf2|51786|cleavage and polyadenylation specific factor 2	AK054372|Cpsf2|51786|cleavage and polyadenylation specific factor 2	AK140869|Cpsf2|51786|cleavage and polyadenylation specific factor 2	AK141325|Cpsf2|51786|cleavage and polyadenylation specific factor 2	BC013628|Cpsf2|51786|cleavage and polyadenylation specific factor 2
mm9_v1_chr3_+_122432075_122432112	0.077754	GGCAAGA	AF541937|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	NM_153422|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	BC119137|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	BC120486|Pde5a|242202|phosphodiesterase 5A, cGMP-specific
mm9_v1_chr18_+_37164856_37165092	0.0710228	GGCAAGA	BC079625|Pcdha10|12943|protocadherin alpha 10	AY013757|Pcdha10|12943|protocadherin alpha 10	NM_009961|Pcdha10|12943|protocadherin alpha 10	AB008178|Pcdha10|12943|protocadherin alpha 10
mm9_v1_chr4_+_17780628_17780643	0.0702619	GGCAAGA	BC057926|Mmp16|17389|matrix metallopeptidase 16	NM_019724|Mmp16|17389|matrix metallopeptidase 16
mm9_v1_chr18_+_52491189_52491233	0.0684881	GGCAAGA	AK015346|Ftmt|67634|ferritin mitochondrial	AK015400|Ftmt|67634|ferritin mitochondrial	NM_026286|Ftmt|67634|ferritin mitochondrial	AK133009|Ftmt|67634|ferritin mitochondrial	BC115514|Ftmt|67634|ferritin mitochondrial	BC115515|Ftmt|67634|ferritin mitochondrial
mm9_v1_chr16_-_18235102_18235235	0.0607432	GGCAAGA	AY668947|Zdhhc8|27801|zinc finger, DHHC domain containing 8	AY894892|Zdhhc8|27801|zinc finger, DHHC domain containing 8	NM_172151|Zdhhc8|27801|zinc finger, DHHC domain containing 8
mm9_v1_chr5_-_123350242_123350397	0.0577538	GGCAAGA	AK031626|Kdm2b|30841|lysine (K)-specific demethylase 2B	BC057622|Kdm2b|30841|lysine (K)-specific demethylase 2B	NM_013910|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr7_+_139158135_139158148	0.04898	GGCAAGA	AK036100|Gpr26|233919|G protein-coupled receptor 26	NM_173410|Gpr26|233919|G protein-coupled receptor 26
mm9_v1_chrX_+_136335346_136335366	0.0402725	GGCAAGA	NM_016675|Cldn2|12738|claudin 2	BC085494|Cldn2|12738|claudin 2
mm9_v1_chrX_-_45945309_45945309	0.0359544	GGCAAGA	BC063775|Zfp280c|208968|zinc finger protein 280C	NM_153532|Zfp280c|208968|zinc finger protein 280C
mm9_v1_chr9_-_110379093_110379197	0.0295816	GGCAAGA	BC065167|Klhl18|270201|kelch-like 18 (Drosophila)	BC025563|Klhl18|270201|kelch-like 18 (Drosophila)	AK173029|Klhl18|270201|kelch-like 18 (Drosophila)	NM_177771|Klhl18|270201|kelch-like 18 (Drosophila)
mm9_v1_chr11_-_96638811_96638880	0.0246528	GGCAAGA	AK020952|Snx11|74479|sorting nexin 11	BC014719|Snx11|74479|sorting nexin 11	AK037747|Snx11|74479|sorting nexin 11	AK042409|Snx11|74479|sorting nexin 11	AK076332|Snx11|74479|sorting nexin 11	NM_001163389|Snx11|74479|sorting nexin 11	NM_028965|Snx11|74479|sorting nexin 11
mm9_v1_chr1_-_63160764_63160840	0.0184974	GGCAAGA	AK049468|Ino80d|227195|INO80 complex subunit D	NM_001081436|Ino80d|227195|INO80 complex subunit D	NM_001114609|Ino80d|227195|INO80 complex subunit D
mm9_v1_chr2_-_115890747_115890848	0.0169612	GGCAAGA	U68383|Meis2|17536|Meis homeobox 2	U68384|Meis2|17536|Meis homeobox 2	AJ000504|Meis2|17536|Meis homeobox 2	AJ000505|Meis2|17536|Meis homeobox 2	AJ000506|Meis2|17536|Meis homeobox 2	AJ000507|Meis2|17536|Meis homeobox 2	AK146633|Meis2|17536|Meis homeobox 2	NM_001136072|Meis2|17536|Meis homeobox 2	NM_001159567|Meis2|17536|Meis homeobox 2	NM_001159568|Meis2|17536|Meis homeobox 2	NM_010825|Meis2|17536|Meis homeobox 2	BC017375|Meis2|17536|Meis homeobox 2
mm9_v1_chr19_-_7369859_7369936	0.011949	GGCAAGA	AK172664|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080390|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	AK154864|Mark2|13728|MAP/microtubule affinity-regulating kinase 2
mm9_v1_chr2_+_155207581_155207616	0.0112226	GGCAAGA	AJ297793|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK146589|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	BC043086|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	NM_178111|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK149495|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chrX_-_50622974_50623027	0.0105366	GGCAAGA	AK036417|Fam122b|78755|family with sequence similarity 122, member B	AK044896|Fam122b|78755|family with sequence similarity 122, member B	NM_001166365|Fam122b|78755|family with sequence similarity 122, member B	NM_001166583|Fam122b|78755|family with sequence similarity 122, member B	NM_030167|Fam122b|78755|family with sequence similarity 122, member B
mm9_v1_chr13_-_108680257_108680267	0.00689095	GGCAAGA	NM_145456|Zswim6|67263|zinc finger, SWIM domain containing 6
mm9_v1_chr11_-_69761489_69761691	0.00681607	GGCAAGA	AB008453|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	M23383|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	BC014282|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	AK138832|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	AK164310|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	AK137607|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	AK160882|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	NM_009204|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4
mm9_v1_chr11_-_113545329_113545497	0.00513945	GGCAAGA	AK009763|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK159228|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK159659|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK017659|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK087540|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK028386|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	NM_138598|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed
mm9_v1_chr13_-_55464135_55464143	0.00175895	GGCAAGA	BC055327|Lman2|66890|lectin, mannose-binding 2	NM_025828|Lman2|66890|lectin, mannose-binding 2
