mm9_v1_chr2_+_136539143_136539198	63.3636	GGCAGUG	NM_011428|Snap25|20614|synaptosomal-associated protein 25	AK078038|Snap25|20614|synaptosomal-associated protein 25
mm9_v1_chr10_-_108447674_108447736	51.175	GGCAGUG	BC042519|Syt1|20979|synaptotagmin I	NM_009306|Syt1|20979|synaptotagmin I
mm9_v1_chr9_-_53823107_53823121	47.0947	GGCAGUG	AK132239|Elmod1|270162|ELMO domain containing 1	NM_177769|Elmod1|270162|ELMO domain containing 1
mm9_v1_chr15_-_91403685_91403705	43.7175	GGCAGUG	AK147341|Slc2a13|239606|solute carrier family 2 (facilitated glucose transporter), member 13	NM_001033633|Slc2a13|239606|solute carrier family 2 (facilitated glucose transporter), member 13
mm9_v1_chr15_+_82105322_82105458	41.2285	GGCAGUG	AF104411|Sept3|24050|septin 3	NM_011889|Sept3|24050|septin 3	BC055738|Sept3|24050|septin 3
mm9_v1_chr10_+_40603330_40603398	39.0615	GGCAGUG	NM_031877|Wasf1|83767|WASP family 1	BC053423|Wasf1|83767|WASP family 1	BC016896|Wasf1|83767|WASP family 1
mm9_v1_chr7_-_116925058_116925063	38.857	GGCAGUG	AK020731|Nrip3|78593|nuclear receptor interacting protein 3	AK083130|Nrip3|78593|nuclear receptor interacting protein 3	NM_020610|Nrip3|78593|nuclear receptor interacting protein 3
mm9_v1_chr4_-_49610586_49610747	38.6133	GGCAGUG	BC013800|2810432L12Rik|67063|RIKEN cDNA 2810432L12 gene	AK045523|2810432L12Rik|67063|RIKEN cDNA 2810432L12 gene	AK075994|2810432L12Rik|67063|RIKEN cDNA 2810432L12 gene	AK038607|2810432L12Rik|67063|RIKEN cDNA 2810432L12 gene	AK013226|2810432L12Rik|67063|RIKEN cDNA 2810432L12 gene	AK039788|2810432L12Rik|67063|RIKEN cDNA 2810432L12 gene	AK038514|2810432L12Rik|67063|RIKEN cDNA 2810432L12 gene	AK165526|2810432L12Rik|67063|RIKEN cDNA 2810432L12 gene	NM_025944|2810432L12Rik|67063|RIKEN cDNA 2810432L12 gene	AK042679|2810432L12Rik|67063|RIKEN cDNA 2810432L12 gene
mm9_v1_chr8_+_98226914_98226962	36.864	GGCAGUG	NM_001195006|Ndrg4|234593|N-myc downstream regulated gene 4	NM_145602|Ndrg4|234593|N-myc downstream regulated gene 4	AK168873|Ndrg4|234593|N-myc downstream regulated gene 4	AK090374|Ndrg4|234593|N-myc downstream regulated gene 4	AK144294|Ndrg4|234593|N-myc downstream regulated gene 4	BC006595|Ndrg4|234593|N-myc downstream regulated gene 4
mm9_v1_chr13_+_54472705_54472742	35.5441	GGCAGUG	NM_009946|Cplx2|12890|complexin 2
mm9_v1_chr2_-_130468507_130468540	33.4908	GGCAGUG	AK161711|Prosapip1|241638|ProSAPiP1 protein	AK148251|Prosapip1|241638|ProSAPiP1 protein	NM_197945|Prosapip1|241638|ProSAPiP1 protein
mm9_v1_chr4_-_25727109_25727390	33.306	GGCAGUG	AK049122|Fut9|14348|fucosyltransferase 9	NM_010243|Fut9|14348|fucosyltransferase 9	AK032177|Fut9|14348|fucosyltransferase 9	AK139133|Fut9|14348|fucosyltransferase 9	AK033607|Fut9|14348|fucosyltransferase 9
mm9_v1_chr15_+_30102306_30102347	33.2771	GGCAGUG	NM_008729|Ctnnd2|18163|catenin (cadherin associated protein), delta 2	U90331|Ctnnd2|18163|catenin (cadherin associated protein), delta 2
mm9_v1_chr2_-_32208737_32208880	32.8964	GGCAGUG	L31395|Dnm1|13429|dynamin 1	BC058623|Dnm1|13429|dynamin 1	L31397|Dnm1|13429|dynamin 1	AK220483|Dnm1|13429|dynamin 1	AK144142|Dnm1|13429|dynamin 1	BC034679|Dnm1|13429|dynamin 1	AK011651|Dnm1|13429|dynamin 1	NM_010065|Dnm1|13429|dynamin 1
mm9_v1_chr11_+_68902025_68902081	32.5946	GGCAGUG	BC055105|Vamp2|22318|vesicle-associated membrane protein 2	NM_009497|Vamp2|22318|vesicle-associated membrane protein 2	BC039745|Vamp2|22318|vesicle-associated membrane protein 2	U60150|Vamp2|22318|vesicle-associated membrane protein 2
mm9_v1_chr6_-_58857000_58857134	31.8311	GGCAGUG	AB041556|Nap1l5|58243|nucleosome assembly protein 1-like 5	BC046332|Nap1l5|58243|nucleosome assembly protein 1-like 5	NM_021432|Nap1l5|58243|nucleosome assembly protein 1-like 5
mm9_v1_chr9_+_111214242_111214242	30.973	GGCAGUG	AK079552|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1	NM_001164659|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1
mm9_v1_chr5_-_114541313_114541402	30.8891	GGCAGUG	BC059878|Svop|68666|SV2 related protein	AK047655|Svop|68666|SV2 related protein	AK053833|Svop|68666|SV2 related protein	AK160770|Svop|68666|SV2 related protein	AK047764|Svop|68666|SV2 related protein	AK082744|Svop|68666|SV2 related protein	NM_026805|Svop|68666|SV2 related protein
mm9_v1_chr19_+_38339167_38339370	30.8627	GGCAGUG	AK045443|Lgi1|56839|leucine-rich repeat LGI family, member 1	BC066090|Lgi1|56839|leucine-rich repeat LGI family, member 1	NM_020278|Lgi1|56839|leucine-rich repeat LGI family, member 1	AF246818|Lgi1|56839|leucine-rich repeat LGI family, member 1	AK035873|Lgi1|56839|leucine-rich repeat LGI family, member 1	AK031996|Lgi1|56839|leucine-rich repeat LGI family, member 1
mm9_v1_chr3_+_7366586_7366727	29.9412	GGCAGUG	NM_008862|Pkia|18767|protein kinase inhibitor, alpha	BC048244|Pkia|18767|protein kinase inhibitor, alpha	AK139347|Pkia|18767|protein kinase inhibitor, alpha
mm9_v1_chr18_+_86564229_86564343	29.9286	GGCAGUG	AK081325|Neto1|246317|neuropilin (NRP) and tolloid (TLL)-like 1	NM_144946|Neto1|246317|neuropilin (NRP) and tolloid (TLL)-like 1
mm9_v1_chr6_+_47194393_47194453	29.8074	GGCAGUG	NM_025771|Cntnap2|66797|contactin associated protein-like 2	AK017341|Cntnap2|66797|contactin associated protein-like 2	AK013139|Cntnap2|66797|contactin associated protein-like 2	BC029826|Cntnap2|66797|contactin associated protein-like 2	BC103799|Cntnap2|66797|contactin associated protein-like 2
mm9_v1_chr15_+_89330287_89330287	29.1112	GGCAGUG	AB231013|Shank3|58234|SH3/ankyrin domain gene 3	NM_021423|Shank3|58234|SH3/ankyrin domain gene 3
mm9_v1_chr6_+_45010040_45010086	28.3753	GGCAGUG	NM_001004357|Cntnap2|66797|contactin associated protein-like 2	AK129232|Cntnap2|66797|contactin associated protein-like 2
mm9_v1_chr10_+_69388242_69388279	28.1789	GGCAGUG	L40631|Ank3|11735|ankyrin 3, epithelial	NM_009670|Ank3|11735|ankyrin 3, epithelial	NM_170687|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr6_+_110595586_110595619	27.5467	GGCAGUG	BC080315|Grm7|108073|glutamate receptor, metabotropic 7	NM_177328|Grm7|108073|glutamate receptor, metabotropic 7
mm9_v1_chr13_-_36826245_36826363	26.0781	GGCAGUG	AK161859|Nrn1|68404|neuritin 1	BC035531|Nrn1|68404|neuritin 1	NM_153529|Nrn1|68404|neuritin 1
mm9_v1_chr10_+_68996455_68996596	26.0362	GGCAGUG	NM_146005|Ank3|11735|ankyrin 3, epithelial	NM_170688|Ank3|11735|ankyrin 3, epithelial	NM_170689|Ank3|11735|ankyrin 3, epithelial	NM_170690|Ank3|11735|ankyrin 3, epithelial	NM_170728|Ank3|11735|ankyrin 3, epithelial	NM_170729|Ank3|11735|ankyrin 3, epithelial	NM_170730|Ank3|11735|ankyrin 3, epithelial	AK162547|Ank3|11735|ankyrin 3, epithelial	AK042330|Ank3|11735|ankyrin 3, epithelial	BC021657|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr9_+_44925922_44925963	25.9653	GGCAGUG	NM_001014761|Scn2b|72821|sodium channel, voltage-gated, type II, beta	AB118947|Scn2b|72821|sodium channel, voltage-gated, type II, beta	BC092225|Scn2b|72821|sodium channel, voltage-gated, type II, beta
mm9_v1_chrX_+_143397055_143397188	25.5188	GGCAGUG	AK034512|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK043320|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK079648|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK139392|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	NM_008312|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK086348|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	BC098327|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	M63685|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	X72230|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C
mm9_v1_chr9_-_73781373_73781373	24.6088	GGCAGUG	NM_001081153|Unc13c|208898|unc-13 homolog C (C. elegans)
mm9_v1_chr12_+_53800369_53800393	24.413	GGCAGUG	AK147248|Akap6|238161|A kinase (PRKA) anchor protein 6	AK147371|Akap6|238161|A kinase (PRKA) anchor protein 6	NM_198111|Akap6|238161|A kinase (PRKA) anchor protein 6
mm9_v1_chr4_-_68615382_68615433	23.8552	GGCAGUG	BC048789|Dbc1|56710|deleted in bladder cancer 1 (human)	BC079630|Dbc1|56710|deleted in bladder cancer 1 (human)	AB060589|Dbc1|56710|deleted in bladder cancer 1 (human)	NM_019967|Dbc1|56710|deleted in bladder cancer 1 (human)
mm9_v1_chr4_-_151235861_151235879	23.8069	GGCAGUG	AK158710|Camta1|100072|calmodulin binding transcription activator 1	NM_001081557|Camta1|100072|calmodulin binding transcription activator 1	NM_001195565|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr1_-_174136874_174136913	23.7569	GGCAGUG	NM_011063|Pea15a|18611|phosphoprotein enriched in astrocytes 15A
mm9_v1_chr15_+_98462650_98462843	23.5349	GGCAGUG	NM_001044741|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit
mm9_v1_chr14_-_9142289_9142295	23.321	GGCAGUG	BC055107|Fam107a|268709|family with sequence similarity 107, member A	NM_183187|Fam107a|268709|family with sequence similarity 107, member A	AK165722|Fam107a|268709|family with sequence similarity 107, member A
mm9_v1_chr5_+_14514906_14514924	23.2829	GGCAGUG	NM_001110796|Pclo|26875|piccolo (presynaptic cytomatrix protein)	NM_011995|Pclo|26875|piccolo (presynaptic cytomatrix protein)	Y19185|Pclo|26875|piccolo (presynaptic cytomatrix protein)	Y19186|Pclo|26875|piccolo (presynaptic cytomatrix protein)
mm9_v1_chr2_+_158492468_158492468	23.119	GGCAGUG	NM_153089|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm9_v1_chr11_-_76322920_76322935	23.0436	GGCAGUG	BC058708|Abr|109934|active BCR-related gene	NM_198018|Abr|109934|active BCR-related gene
mm9_v1_chr7_+_146271899_146271899	23.0231	GGCAGUG	AK165694|Dpysl4|26757|dihydropyrimidinase-like 4	NM_011993|Dpysl4|26757|dihydropyrimidinase-like 4
mm9_v1_chr15_+_98465193_98465247	23.0174	GGCAGUG	NM_007581|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit	AK148088|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit
mm9_v1_chr3_-_107320881_107320937	22.7846	GGCAGUG	AK163113|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	AY155578|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	NM_172271|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17
mm9_v1_chr5_+_37442095_37442154	22.7817	GGCAGUG	NM_178394|Jakmip1|76071|janus kinase and microtubule interacting protein 1	AK077298|Jakmip1|76071|janus kinase and microtubule interacting protein 1	AK143621|Jakmip1|76071|janus kinase and microtubule interacting protein 1
mm9_v1_chr10_+_85061155_85061265	22.6884	GGCAGUG	NM_001017525|Btbd11|74007|BTB (POZ) domain containing 11	AK044022|Btbd11|74007|BTB (POZ) domain containing 11
mm9_v1_chr19_+_4711220_4711230	22.5792	GGCAGUG	BC079860|Spnb3|20743|spectrin beta 3	NM_021287|Spnb3|20743|spectrin beta 3
mm9_v1_chr15_-_98638348_98638375	22.4152	GGCAGUG	AK158894|Ddn|13199|dendrin	NM_001013741|Ddn|13199|dendrin
mm9_v1_chr2_+_163264188_163264268	22.1286	GGCAGUG	NM_144891|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1	AK164991|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1	AK140488|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1	AK141371|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1	BC019941|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1
mm9_v1_chr2_-_66278870_66278908	22.0657	GGCAGUG	AK046001|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	AK134744|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	NM_018733|Scn1a|20265|sodium channel, voltage-gated, type I, alpha
mm9_v1_chr5_-_21850490_21850524	21.9369	GGCAGUG	U24703|Reln|19699|reelin	AK035849|Reln|19699|reelin	AK042773|Reln|19699|reelin	AK082447|Reln|19699|reelin	AK082508|Reln|19699|reelin	AK164676|Reln|19699|reelin	NM_011261|Reln|19699|reelin
mm9_v1_chr3_-_146444377_146444386	21.6436	GGCAGUG	AK150122|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK150134|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	NM_001164200|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr17_-_43803963_43804162	21.0512	GGCAGUG	AK014394|Slc25a27|74011|solute carrier family 25, member 27	NM_028711|Slc25a27|74011|solute carrier family 25, member 27	BC138993|Slc25a27|74011|solute carrier family 25, member 27	BC138994|Slc25a27|74011|solute carrier family 25, member 27	AB106930|Slc25a27|74011|solute carrier family 25, member 27	AK021314|Slc25a27|74011|solute carrier family 25, member 27	AK043831|Slc25a27|74011|solute carrier family 25, member 27
mm9_v1_chr5_+_113919352_113919613	21.012	GGCAGUG	BC096526|Wscd2|320916|WSC domain containing 2	NM_177292|Wscd2|320916|WSC domain containing 2
mm9_v1_chr6_+_114232618_114232629	20.5809	GGCAGUG	NM_178703|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm9_v1_chr1_+_160292470_160292548	20.3704	GGCAGUG	AK164117|Astn1|11899|astrotactin 1	NM_007495|Astn1|11899|astrotactin 1	BC094666|Astn1|11899|astrotactin 1
mm9_v1_chr11_-_76391228_76391228	19.9467	GGCAGUG	NM_198894|Abr|109934|active BCR-related gene
mm9_v1_chr9_-_16182674_16182674	19.7994	GGCAGUG	NM_001080814|Fat3|270120|FAT tumor suppressor homolog 3 (Drosophila)
mm9_v1_chr19_+_6427922_6428015	19.6868	GGCAGUG	BC145496|Nrxn2|18190|neurexin II	BC150784|Nrxn2|18190|neurexin II	NM_020253|Nrxn2|18190|neurexin II
mm9_v1_chr12_+_50483869_50483993	19.5079	GGCAGUG	AK132305|Foxg1|15228|forkhead box G1	NM_001160112|Foxg1|15228|forkhead box G1	NM_008241|Foxg1|15228|forkhead box G1	U36760|Foxg1|15228|forkhead box G1
mm9_v1_chr6_+_86028044_86028077	19.4278	GGCAGUG	AK156954|Add2|11519|adducin 2 (beta)	AK028425|Add2|11519|adducin 2 (beta)	AK014496|Add2|11519|adducin 2 (beta)	NM_013458|Add2|11519|adducin 2 (beta)
mm9_v1_chr3_-_126646303_126646303	19.0326	GGCAGUG	BC043123|Ank2|109676|ankyrin 2, brain	NM_001034168|Ank2|109676|ankyrin 2, brain
mm9_v1_chr1_+_11254043_11254083	18.8742	GGCAGUG	AK136059|Prex2|109294|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	NM_001033636|Prex2|109294|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	BC139253|Prex2|109294|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	BC139255|Prex2|109294|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm9_v1_chr10_+_84849558_84849599	18.8137	GGCAGUG	BC096535|Btbd11|74007|BTB (POZ) domain containing 11	NM_028709|Btbd11|74007|BTB (POZ) domain containing 11
mm9_v1_chr2_+_121121189_121121220	18.7516	GGCAGUG	NM_001173506|Mtap1a|17754|microtubule-associated protein 1 A	AF182212|Mtap1a|17754|microtubule-associated protein 1 A	BC028853|Mtap1a|17754|microtubule-associated protein 1 A	AK160546|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr9_+_120213190_120213236	18.5787	GGCAGUG	AK083225|Myrip|245049|myosin VIIA and Rab interacting protein	NM_144557|Myrip|245049|myosin VIIA and Rab interacting protein	AK038988|Myrip|245049|myosin VIIA and Rab interacting protein
mm9_v1_chr2_+_106535757_106535757	18.5707	GGCAGUG	AK012553|Mpped2|77015|metallophosphoesterase domain containing 2	NM_029837|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr11_-_101949793_101949840	18.466	GGCAGUG	AK172253|Mpp2|50997|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	AF162685|Mpp2|50997|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	AK161577|Mpp2|50997|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	BC053026|Mpp2|50997|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	NM_016695|Mpp2|50997|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)
mm9_v1_chrX_+_69208336_69208359	18.4454	GGCAGUG	BC060135|Prrg3|208748|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)	NM_001081135|Prrg3|208748|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
mm9_v1_chr11_-_80966253_80966404	18.1045	GGCAGUG	BC138530|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	BC138529|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	BC038551|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	NM_007384|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	Y14634|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)
mm9_v1_chr2_+_65508501_65508501	18.0442	GGCAGUG	NM_001099298|Scn2a1|110876|sodium channel, voltage-gated, type II, alpha 1
mm9_v1_chr4_+_33069972_33070146	17.6166	GGCAGUG	NM_027491|Rragd|52187|Ras-related GTP binding D	AF490406|Rragd|52187|Ras-related GTP binding D
mm9_v1_chr2_+_121115337_121115465	17.5442	GGCAGUG	AF182213|Mtap1a|17754|microtubule-associated protein 1 A	NM_032393|Mtap1a|17754|microtubule-associated protein 1 A	AK044057|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr16_-_91011339_91011552	17.4451	GGCAGUG	NM_001045515|Synj1|104015|synaptojanin 1	NM_001164483|Synj1|104015|synaptojanin 1
mm9_v1_chr16_-_44332950_44332950	17.3986	GGCAGUG	BC079584|Sidt1|320007|SID1 transmembrane family, member 1	NM_001159419|Sidt1|320007|SID1 transmembrane family, member 1	NM_198034|Sidt1|320007|SID1 transmembrane family, member 1
mm9_v1_chr7_+_19661548_19661579	17.3766	GGCAGUG	NM_010058|Dmwd|13401|dystrophia myotonica-containing WD repeat motif
mm9_v1_chr3_-_146433544_146433656	17.0893	GGCAGUG	AK163585|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK148728|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	NM_001164199|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr10_-_61842599_61842655	16.5728	GGCAGUG	EU430531|Hk1|15275|hexokinase 1	EU430532|Hk1|15275|hexokinase 1	EU430533|Hk1|15275|hexokinase 1	L16949|Hk1|15275|hexokinase 1	NM_010438|Hk1|15275|hexokinase 1
mm9_v1_chr9_-_75446888_75446974	16.2879	GGCAGUG	AK076562|Tmod2|50876|tropomodulin 2	AK015263|Tmod2|50876|tropomodulin 2	AK017072|Tmod2|50876|tropomodulin 2	BC052227|Tmod2|50876|tropomodulin 2	NM_001038710|Tmod2|50876|tropomodulin 2	AK015719|Tmod2|50876|tropomodulin 2
mm9_v1_chrX_-_35605626_35605657	16.2141	GGCAGUG	NM_172930|Fam70a|245386|family with sequence similarity 70, member A
mm9_v1_chr12_-_100139666_100139693	16.0278	GGCAGUG	AK081694|Eml5|319670|echinoderm microtubule associated protein like 5	NM_001081191|Eml5|319670|echinoderm microtubule associated protein like 5
mm9_v1_chr9_-_99336923_99337150	15.9963	GGCAGUG	AK050469|Mras|17532|muscle and microspikes RAS	AB004879|Mras|17532|muscle and microspikes RAS	NM_008624|Mras|17532|muscle and microspikes RAS
mm9_v1_chr11_+_105451296_105451348	15.7401	GGCAGUG	AK019982|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	NM_181071|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	AK051973|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm9_v1_chr15_-_76648532_76648614	15.729	GGCAGUG	AK173232|Arhgap39|223666|Rho GTPase activating protein 39	AK141623|Arhgap39|223666|Rho GTPase activating protein 39	BC060637|Arhgap39|223666|Rho GTPase activating protein 39	NM_001168288|Arhgap39|223666|Rho GTPase activating protein 39	NM_198420|Arhgap39|223666|Rho GTPase activating protein 39
mm9_v1_chrX_-_69901382_69901584	15.6678	GGCAGUG	BC119317|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	BC120686|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	M86568|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	AK134760|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	AK039144|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	NM_008067|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3
mm9_v1_chr8_-_70342105_70342226	15.5344	GGCAGUG	BC131913|Psd3|234353|pleckstrin and Sec7 domain containing 3	BC145641|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK031477|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK147606|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_027626|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr6_-_85452851_85452987	15.3837	GGCAGUG	AK147681|Fbxo41|330369|F-box protein 41	AK147230|Fbxo41|330369|F-box protein 41	NM_001001160|Fbxo41|330369|F-box protein 41	BC070445|Fbxo41|330369|F-box protein 41
mm9_v1_chr4_+_42930076_42930171	15.2763	GGCAGUG	BC057092|N28178|230085|expressed sequence N28178	NM_172690|N28178|230085|expressed sequence N28178	AK046283|N28178|230085|expressed sequence N28178	AK038528|N28178|230085|expressed sequence N28178
mm9_v1_chr2_+_106533615_106533705	15.2162	GGCAGUG	AK161666|Mpped2|77015|metallophosphoesterase domain containing 2	NM_001143683|Mpped2|77015|metallophosphoesterase domain containing 2	BC020182|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr11_-_81781897_81781910	15.1915	GGCAGUG	NM_001034013|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	AK134778|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	AF348465|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)
mm9_v1_chr18_-_61560053_61560099	14.8998	GGCAGUG	AK028464|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	BC150699|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	AK086111|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	AF453324|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	NM_133249|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta
mm9_v1_chr5_+_19413335_19413335	14.6095	GGCAGUG	AK147530|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_001170745|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_015823|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chr5_-_31395853_31395951	14.6022	GGCAGUG	U76007|Slc30a3|22784|solute carrier family 30 (zinc transporter), member 3	AK165796|Slc30a3|22784|solute carrier family 30 (zinc transporter), member 3	BC066199|Slc30a3|22784|solute carrier family 30 (zinc transporter), member 3	AK144568|Slc30a3|22784|solute carrier family 30 (zinc transporter), member 3	NM_011773|Slc30a3|22784|solute carrier family 30 (zinc transporter), member 3
mm9_v1_chr18_+_39152776_39152837	14.5626	GGCAGUG	AK011368|Arhgap26|71302|Rho GTPase activating protein 26	NM_175164|Arhgap26|71302|Rho GTPase activating protein 26
mm9_v1_chr6_-_136123521_136123528	14.5063	GGCAGUG	AJ459261|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)	AJ459262|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)	AJ459263|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)	AK002963|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)	NM_008171|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm9_v1_chr7_-_147340532_147340650	14.3741	GGCAGUG	BC056484|Sprn|212518|shadow of prion protein	NM_183147|Sprn|212518|shadow of prion protein	AK049995|Sprn|212518|shadow of prion protein
mm9_v1_chr1_-_77511653_77511664	14.2158	GGCAGUG	AK028509|Epha4|13838|Eph receptor A4	AK147698|Epha4|13838|Eph receptor A4	AK132203|Epha4|13838|Eph receptor A4	NM_007936|Epha4|13838|Eph receptor A4	S57168|Epha4|13838|Eph receptor A4	X65138|Epha4|13838|Eph receptor A4
mm9_v1_chr11_+_75007475_75007498	14.137	GGCAGUG	AK140456|Rtn4rl1|237847|reticulon 4 receptor-like 1	NM_177708|Rtn4rl1|237847|reticulon 4 receptor-like 1	AK033286|Rtn4rl1|237847|reticulon 4 receptor-like 1
mm9_v1_chr10_-_61802889_61803289	14.0051	GGCAGUG	AK167468|Hk1|15275|hexokinase 1	AK143630|Hk1|15275|hexokinase 1	NM_001146100|Hk1|15275|hexokinase 1	BC072628|Hk1|15275|hexokinase 1
mm9_v1_chr2_+_38206759_38206827	13.9577	GGCAGUG	AK053572|Lhx2|16870|LIM homeobox protein 2	NM_010710|Lhx2|16870|LIM homeobox protein 2
mm9_v1_chr3_-_126701367_126701380	13.893	GGCAGUG	AK032060|Ank2|109676|ankyrin 2, brain	NM_178655|Ank2|109676|ankyrin 2, brain
mm9_v1_chr16_-_34514112_34514198	13.8415	GGCAGUG	BC157950|Kalrn|545156|kalirin, RhoGEF kinase	BC172101|Kalrn|545156|kalirin, RhoGEF kinase	NM_001164268|Kalrn|545156|kalirin, RhoGEF kinase	NM_177357|Kalrn|545156|kalirin, RhoGEF kinase	AK147314|Kalrn|545156|kalirin, RhoGEF kinase	AK147518|Kalrn|545156|kalirin, RhoGEF kinase
mm9_v1_chr2_+_29658139_29658348	13.7991	GGCAGUG	AK170377|Slc27a4|26569|solute carrier family 27 (fatty acid transporter), member 4	AK036919|Slc27a4|26569|solute carrier family 27 (fatty acid transporter), member 4	NM_011989|Slc27a4|26569|solute carrier family 27 (fatty acid transporter), member 4	AK155313|Slc27a4|26569|solute carrier family 27 (fatty acid transporter), member 4	AK155388|Slc27a4|26569|solute carrier family 27 (fatty acid transporter), member 4	AK196043|Slc27a4|26569|solute carrier family 27 (fatty acid transporter), member 4	BC023114|Slc27a4|26569|solute carrier family 27 (fatty acid transporter), member 4
mm9_v1_chr3_-_146433200_146433208	13.5149	GGCAGUG	NM_001164198|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr14_-_66043991_66044045	13.47	GGCAGUG	D50055|Pnoc|18155|prepronociceptin	BC119372|Pnoc|18155|prepronociceptin	BC144865|Pnoc|18155|prepronociceptin	D50056|Pnoc|18155|prepronociceptin	AK045893|Pnoc|18155|prepronociceptin	NM_010932|Pnoc|18155|prepronociceptin
mm9_v1_chr3_+_105255247_105255337	13.4409	GGCAGUG	NM_001039347|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AK147574|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr9_-_75459125_75459169	13.4365	GGCAGUG	AK147581|Tmod2|50876|tropomodulin 2	NM_016711|Tmod2|50876|tropomodulin 2
mm9_v1_chr7_-_133942605_133942705	13.3432	GGCAGUG	Y00516|Aldoa|11674|aldolase A, fructose-bisphosphate	BC043026|Aldoa|11674|aldolase A, fructose-bisphosphate	EF662060|Aldoa|11674|aldolase A, fructose-bisphosphate	AK145639|Aldoa|11674|aldolase A, fructose-bisphosphate	AK002561|Aldoa|11674|aldolase A, fructose-bisphosphate	AK162290|Aldoa|11674|aldolase A, fructose-bisphosphate	BC066218|Aldoa|11674|aldolase A, fructose-bisphosphate	BC066801|Aldoa|11674|aldolase A, fructose-bisphosphate	BC050896|Aldoa|11674|aldolase A, fructose-bisphosphate	NM_001177307|Aldoa|11674|aldolase A, fructose-bisphosphate	BC089495|Aldoa|11674|aldolase A, fructose-bisphosphate
mm9_v1_chr5_+_18732863_18732863	13.2821	GGCAGUG	NM_001170746|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chr11_-_76384852_76384920	13.114	GGCAGUG	AK142364|Abr|109934|active BCR-related gene	NM_198895|Abr|109934|active BCR-related gene
mm9_v1_chr2_+_20431673_20431673	13.1135	GGCAGUG	AB125594|Etl4|208618|enhancer trap locus 4	AB125595|Etl4|208618|enhancer trap locus 4	NM_029895|Etl4|208618|enhancer trap locus 4	NM_178059|Etl4|208618|enhancer trap locus 4
mm9_v1_chr1_-_137481914_137481937	13.0654	GGCAGUG	NM_173437|Nav1|215690|neuron navigator 1
mm9_v1_chr2_+_20211539_20211581	13.0439	GGCAGUG	NM_001081006|Etl4|208618|enhancer trap locus 4
mm9_v1_chr12_-_71448600_71448600	13.0276	GGCAGUG	BC052034|Trim9|94090|tripartite motif-containing 9	NM_001110202|Trim9|94090|tripartite motif-containing 9	NM_001110203|Trim9|94090|tripartite motif-containing 9	NM_053167|Trim9|94090|tripartite motif-containing 9
mm9_v1_chr1_-_37776633_37776680	13.0276	GGCAGUG	AK039052|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene	BC072639|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene	NM_028096|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene
mm9_v1_chr2_-_12932442_12932490	13.0153	GGCAGUG	EU399230|C1ql3|227580|C1q-like 3	BC024634|C1ql3|227580|C1q-like 3	NM_153155|C1ql3|227580|C1q-like 3
mm9_v1_chr6_-_126595818_126595818	12.9536	GGCAGUG	NM_010595|Kcna1|16485|potassium voltage-gated channel, shaker-related subfamily, member 1
mm9_v1_chr6_+_103460834_103460869	12.921	GGCAGUG	AK040765|Chl1|12661|cell adhesion molecule with homology to L1CAM	NM_007697|Chl1|12661|cell adhesion molecule with homology to L1CAM
mm9_v1_chr12_-_109241423_109241623	12.5876	GGCAGUG	BC019503|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AF186019|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AK088219|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043551|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043553|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043583|Bcl11b|58208|B-cell leukemia/lymphoma 11B	NM_001079883|Bcl11b|58208|B-cell leukemia/lymphoma 11B	NM_021399|Bcl11b|58208|B-cell leukemia/lymphoma 11B
mm9_v1_chr11_-_97914582_97914775	12.4841	GGCAGUG	AJ608761|Stac2|217154|SH3 and cysteine rich domain 2	BC029794|Stac2|217154|SH3 and cysteine rich domain 2	AK144433|Stac2|217154|SH3 and cysteine rich domain 2	AK079357|Stac2|217154|SH3 and cysteine rich domain 2	BC024864|Stac2|217154|SH3 and cysteine rich domain 2	AK078132|Stac2|217154|SH3 and cysteine rich domain 2	NM_146028|Stac2|217154|SH3 and cysteine rich domain 2
mm9_v1_chr7_-_133942767_133942800	12.4702	GGCAGUG	NM_007438|Aldoa|11674|aldolase A, fructose-bisphosphate
mm9_v1_chr11_+_116780161_116780176	11.963	GGCAGUG	BC063084|Mgat5b|268510|mannoside acetylglucosaminyltransferase 5, isoenzyme B	BC094604|Mgat5b|268510|mannoside acetylglucosaminyltransferase 5, isoenzyme B	NM_172948|Mgat5b|268510|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm9_v1_chr12_-_32398730_32398790	11.9091	GGCAGUG	AK140577|Gpr22|73010|G protein-coupled receptor 22	AK034194|Gpr22|73010|G protein-coupled receptor 22	AK013755|Gpr22|73010|G protein-coupled receptor 22	AK048077|Gpr22|73010|G protein-coupled receptor 22	AK141569|Gpr22|73010|G protein-coupled receptor 22	BC089509|Gpr22|73010|G protein-coupled receptor 22	NM_175191|Gpr22|73010|G protein-coupled receptor 22
mm9_v1_chr1_-_134439500_134439516	11.9072	GGCAGUG	AK147602|Cntn2|21367|contactin 2	NM_177129|Cntn2|21367|contactin 2
mm9_v1_chr9_-_50535949_50536088	11.524	GGCAGUG	AY549884|Dixdc1|330938|DIX domain containing 1	AK016205|Dixdc1|330938|DIX domain containing 1	BC048182|Dixdc1|330938|DIX domain containing 1	BC063085|Dixdc1|330938|DIX domain containing 1	AK164424|Dixdc1|330938|DIX domain containing 1	NM_178118|Dixdc1|330938|DIX domain containing 1
mm9_v1_chr5_+_34338625_34338665	11.4493	GGCAGUG	AK147307|Nat8l|269642|N-acetyltransferase 8-like	NM_001001985|Nat8l|269642|N-acetyltransferase 8-like
mm9_v1_chr11_+_62094922_62095025	11.332	GGCAGUG	AK008442|Ttc19|72795|tetratricopeptide repeat domain 19	NM_028360|Ttc19|72795|tetratricopeptide repeat domain 19	NM_029704|Ttc19|72795|tetratricopeptide repeat domain 19	AK034075|Ttc19|72795|tetratricopeptide repeat domain 19
mm9_v1_chr6_-_122692754_122692762	11.2283	GGCAGUG	AK140176|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	NM_011401|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3
mm9_v1_chr11_-_80191504_80191518	11.2153	GGCAGUG	BC044897|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	AK153246|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	AK078548|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	NM_027472|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene
mm9_v1_chr6_-_82889694_82889743	11.1189	GGCAGUG	AB021291|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC057048|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC090625|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK047067|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC094567|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK035993|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK143196|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	NM_001113481|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	NM_011350|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm9_v1_chr1_+_75396650_75396733	11.1165	GGCAGUG	NM_001173477|Speg|11790|SPEG complex locus
mm9_v1_chr6_+_115084919_115085009	10.9703	GGCAGUG	AF096867|Syn2|20965|synapsin II	NM_001111015|Syn2|20965|synapsin II	NM_013681|Syn2|20965|synapsin II	BC053427|Syn2|20965|synapsin II
mm9_v1_chr1_-_58642994_58643176	10.7725	GGCAGUG	AK052638|Fam126b|213056|family with sequence similarity 126, member B	BC068302|Fam126b|213056|family with sequence similarity 126, member B	AK144602|Fam126b|213056|family with sequence similarity 126, member B	BC049806|Fam126b|213056|family with sequence similarity 126, member B	AK168372|Fam126b|213056|family with sequence similarity 126, member B	NM_172513|Fam126b|213056|family with sequence similarity 126, member B
mm9_v1_chr3_+_94282752_94282752	10.7409	GGCAGUG	AY165052|Celf3|78784|VCUGBP, Elav-like family member 3	NM_172434|Celf3|78784|VCUGBP, Elav-like family member 3
mm9_v1_chr7_+_28043740_28043802	10.3478	GGCAGUG	NM_010950|Numbl|18223|numb-like
mm9_v1_chr10_+_4424140_4424212	10.3463	GGCAGUG	AK030492|Rgs17|56533|regulator of G-protein signaling 17	NM_001161822|Rgs17|56533|regulator of G-protein signaling 17	NM_019958|Rgs17|56533|regulator of G-protein signaling 17	AK018279|Rgs17|56533|regulator of G-protein signaling 17	AK045770|Rgs17|56533|regulator of G-protein signaling 17	AK046009|Rgs17|56533|regulator of G-protein signaling 17	AK078745|Rgs17|56533|regulator of G-protein signaling 17	AK163188|Rgs17|56533|regulator of G-protein signaling 17	AF191555|Rgs17|56533|regulator of G-protein signaling 17	BC064782|Rgs17|56533|regulator of G-protein signaling 17
mm9_v1_chr2_-_91803660_91803893	10.3414	GGCAGUG	NM_138306|Dgkz|104418|diacylglycerol kinase zeta	BC049228|Dgkz|104418|diacylglycerol kinase zeta
mm9_v1_chr3_-_138738152_138738164	10.2466	GGCAGUG	AK158465|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	NM_001040690|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	NM_145544|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	AK172052|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1
mm9_v1_chr7_+_149135647_149135669	10.2025	GGCAGUG	AY660739|Brsk2|75770|BR serine/threonine kinase 2	NM_029426|Brsk2|75770|BR serine/threonine kinase 2
mm9_v1_chr17_-_37088578_37088736	10.2017	GGCAGUG	BC027737|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	AK077455|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	AK089107|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	AK162607|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	AK170104|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	AK005379|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	NM_029632|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm9_v1_chr7_-_133943848_133943969	10.1283	GGCAGUG	AK154295|Aldoa|11674|aldolase A, fructose-bisphosphate	NM_001177308|Aldoa|11674|aldolase A, fructose-bisphosphate
mm9_v1_chr1_-_39707919_39708026	9.84689	GGCAGUG	BC116790|Creg2|263764|cellular repressor of E1A-stimulated genes 2	BC116792|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK044192|Creg2|263764|cellular repressor of E1A-stimulated genes 2	NM_170597|Creg2|263764|cellular repressor of E1A-stimulated genes 2
mm9_v1_chr2_+_91490266_91490274	9.80266	GGCAGUG	AK046291|Arhgap1|228359|Rho GTPase activating protein 1	NM_001145902|Arhgap1|228359|Rho GTPase activating protein 1
mm9_v1_chr2_-_29979973_29980080	9.73111	GGCAGUG	BC048924|Zer1|227693|zer-1 homolog (C. elegans)	NM_178694|Zer1|227693|zer-1 homolog (C. elegans)	AK087046|Zer1|227693|zer-1 homolog (C. elegans)	AK081355|Zer1|227693|zer-1 homolog (C. elegans)	AK048853|Zer1|227693|zer-1 homolog (C. elegans)	BC057021|Zer1|227693|zer-1 homolog (C. elegans)	AK155401|Zer1|227693|zer-1 homolog (C. elegans)
mm9_v1_chr1_-_159342713_159342735	9.66818	GGCAGUG	AK039584|Rasal2|226525|RAS protein activator like 2	NM_177644|Rasal2|226525|RAS protein activator like 2
mm9_v1_chr2_-_91790504_91790533	9.56338	GGCAGUG	AK087503|Dgkz|104418|diacylglycerol kinase zeta	NM_001166597|Dgkz|104418|diacylglycerol kinase zeta
mm9_v1_chr10_+_94039007_94039007	9.42537	GGCAGUG	NM_177026|Tmcc3|319880|transmembrane and coiled coil domains 3
mm9_v1_chr2_+_158492854_158492905	9.42115	GGCAGUG	AK044453|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	NM_001159662|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC054764|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC057542|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AF423761|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AK042123|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm9_v1_chr10_-_109437274_109437274	9.41184	GGCAGUG	NM_001081035|Nav3|260315|neuron navigator 3
mm9_v1_chr5_-_107125783_107125868	9.3482	GGCAGUG	AK053146|Zfp644|52397|zinc finger protein 644	NM_026856|Zfp644|52397|zinc finger protein 644
mm9_v1_chr8_+_125935441_125935463	9.33145	GGCAGUG	AK012528|Tubb3|22152|tubulin, beta 3	AK051298|Tubb3|22152|tubulin, beta 3	AK082942|Tubb3|22152|tubulin, beta 3	AK149014|Tubb3|22152|tubulin, beta 3	BC088749|Tubb3|22152|tubulin, beta 3	BC031357|Tubb3|22152|tubulin, beta 3	NM_023279|Tubb3|22152|tubulin, beta 3
mm9_v1_chr11_-_69373707_69373738	9.27538	GGCAGUG	NM_007911|Efnb3|13643|ephrin B3
mm9_v1_chr17_-_51965912_51965912	9.25694	GGCAGUG	NM_001163631|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr17_-_67703726_67703889	9.20523	GGCAGUG	X58287|Ptprm|19274|protein tyrosine phosphatase, receptor type, M	BC058614|Ptprm|19274|protein tyrosine phosphatase, receptor type, M	NM_008984|Ptprm|19274|protein tyrosine phosphatase, receptor type, M
mm9_v1_chr8_-_70434808_70434844	9.20075	GGCAGUG	BC052365|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK161498|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_030263|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr2_+_58998885_58998932	8.73399	GGCAGUG	AK146720|Pkp4|227937|plakophilin 4	NM_026361|Pkp4|227937|plakophilin 4	NM_175464|Pkp4|227937|plakophilin 4
mm9_v1_chr12_-_51750204_51750242	8.69884	GGCAGUG	NM_008858|Prkd1|18760|protein kinase D1
mm9_v1_chr11_-_119409041_119409133	8.61834	GGCAGUG	BC139018|Nptx1|18164|neuronal pentraxin 1	BC139020|Nptx1|18164|neuronal pentraxin 1	BC093479|Nptx1|18164|neuronal pentraxin 1	NM_008730|Nptx1|18164|neuronal pentraxin 1
mm9_v1_chr8_+_119467267_119467410	8.60616	GGCAGUG	AX775769|Atmin|234776|ATM interactor	NM_177700|Atmin|234776|ATM interactor	BC060631|Atmin|234776|ATM interactor	BC027752|Atmin|234776|ATM interactor	AK122281|Atmin|234776|ATM interactor
mm9_v1_chr3_+_27081918_27081998	8.55471	GGCAGUG	AK128968|Nceh1|320024|arylacetamide deacetylase-like 1	AK038691|Nceh1|320024|arylacetamide deacetylase-like 1	AK045363|Nceh1|320024|arylacetamide deacetylase-like 1	AK085767|Nceh1|320024|arylacetamide deacetylase-like 1	NM_178772|Nceh1|320024|arylacetamide deacetylase-like 1	AK135837|Nceh1|320024|arylacetamide deacetylase-like 1	BC082569|Nceh1|320024|arylacetamide deacetylase-like 1	AK173158|Nceh1|320024|arylacetamide deacetylase-like 1	AK034339|Nceh1|320024|arylacetamide deacetylase-like 1
mm9_v1_chr11_+_104092749_104092776	8.38377	GGCAGUG	M18775|Mapt|17762|microtubule-associated protein tau	M18776|Mapt|17762|microtubule-associated protein tau	NM_001038609|Mapt|17762|microtubule-associated protein tau	NM_010838|Mapt|17762|microtubule-associated protein tau	AK078167|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr11_-_119903061_119903095	8.37368	GGCAGUG	AF011908|Aatk|11302|apoptosis-associated tyrosine kinase	AK155100|Aatk|11302|apoptosis-associated tyrosine kinase	NM_001198787|Aatk|11302|apoptosis-associated tyrosine kinase	AK036705|Aatk|11302|apoptosis-associated tyrosine kinase
mm9_v1_chr2_+_164793487_164793487	8.36975	GGCAGUG	AK147262|Slc12a5|57138|solute carrier family 12, member 5	NM_020333|Slc12a5|57138|solute carrier family 12, member 5
mm9_v1_chr6_-_13789847_13789902	8.27345	GGCAGUG	BC065154|Gpr85|64450|G protein-coupled receptor 85	NM_145066|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr10_+_94038001_94038001	8.22221	GGCAGUG	BC026867|Tmcc3|319880|transmembrane and coiled coil domains 3	NM_001168684|Tmcc3|319880|transmembrane and coiled coil domains 3
mm9_v1_chr16_-_52453104_52453136	8.16128	GGCAGUG	AK053201|Alcam|11658|activated leukocyte cell adhesion molecule	AK030851|Alcam|11658|activated leukocyte cell adhesion molecule	NM_009655|Alcam|11658|activated leukocyte cell adhesion molecule
mm9_v1_chr6_+_29718424_29718454	8.07778	GGCAGUG	AK165725|Ahcyl2|74340|S-adenosylhomocysteine hydrolase-like 2	NM_001171000|Ahcyl2|74340|S-adenosylhomocysteine hydrolase-like 2	NM_021414|Ahcyl2|74340|S-adenosylhomocysteine hydrolase-like 2
mm9_v1_chr14_-_47441795_47441916	8.0506	GGCAGUG	AB001732|Gmfb|63985|glia maturation factor, beta	BC040233|Gmfb|63985|glia maturation factor, beta	AB050013|Gmfb|63985|glia maturation factor, beta	BC049134|Gmfb|63985|glia maturation factor, beta	AK013970|Gmfb|63985|glia maturation factor, beta	AK013947|Gmfb|63985|glia maturation factor, beta	AF297220|Gmfb|63985|glia maturation factor, beta	AK142014|Gmfb|63985|glia maturation factor, beta	NM_022023|Gmfb|63985|glia maturation factor, beta
mm9_v1_chr10_-_80945445_80945464	8.02952	GGCAGUG	NM_176954|Celf5|319586|CUGBP, Elav-like family member 5
mm9_v1_chr11_-_74710562_74710581	8.00738	GGCAGUG	BC058414|Sgsm2|97761|small G protein signaling modulator 2	BC060163|Sgsm2|97761|small G protein signaling modulator 2	NM_197943|Sgsm2|97761|small G protein signaling modulator 2
mm9_v1_chr7_+_98239230_98239295	7.89315	GGCAGUG	NM_011807|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr10_+_4795808_4795848	7.742	GGCAGUG	AF535143|Syne1|64009|synaptic nuclear envelope 1	NM_153399|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr15_+_16707855_16707855	7.71943	GGCAGUG	NM_009869|Cdh9|12565|cadherin 9
mm9_v1_chr19_+_6046575_6046661	7.63131	GGCAGUG	NM_028769|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	BC057917|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin
mm9_v1_chr7_+_64845887_64845914	7.62325	GGCAGUG	AK083107|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	NM_001038701|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm9_v1_chr8_+_32200076_32200146	7.60577	GGCAGUG	AK009781|Dusp26|66959|dual specificity phosphatase 26 (putative)	NM_025869|Dusp26|66959|dual specificity phosphatase 26 (putative)
mm9_v1_chr18_-_31606908_31607087	7.5412	GGCAGUG	BC052738|Syt4|20983|synaptotagmin IV	BC058208|Syt4|20983|synaptotagmin IV	AK050515|Syt4|20983|synaptotagmin IV	AK220264|Syt4|20983|synaptotagmin IV	AK148681|Syt4|20983|synaptotagmin IV	AK043985|Syt4|20983|synaptotagmin IV	AK083960|Syt4|20983|synaptotagmin IV	AK032106|Syt4|20983|synaptotagmin IV	NM_009308|Syt4|20983|synaptotagmin IV
mm9_v1_chr13_+_58907953_58907974	7.51021	GGCAGUG	NM_008745|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr18_-_35374663_35374683	7.4376	GGCAGUG	AK122278|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK036155|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK044705|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK046774|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	NM_178005|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2
mm9_v1_chr17_-_82137708_82137731	7.25987	GGCAGUG	AF004666|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_001112798|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_011406|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	U70033|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	AK084813|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene	AK085810|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene
mm9_v1_chr9_-_64101354_64101425	7.22061	GGCAGUG	AK167336|Map2k1|26395|mitogen-activated protein kinase kinase 1	AB041567|Map2k1|26395|mitogen-activated protein kinase kinase 1	AK146233|Map2k1|26395|mitogen-activated protein kinase kinase 1	AK146931|Map2k1|26395|mitogen-activated protein kinase kinase 1	AK165894|Map2k1|26395|mitogen-activated protein kinase kinase 1	NM_008927|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr4_-_45097427_45097496	7.13915	GGCAGUG	AK153358|Fbxo10|269529|F-box protein 10	BC054731|Fbxo10|269529|F-box protein 10	AK150292|Fbxo10|269529|F-box protein 10	AK142389|Fbxo10|269529|F-box protein 10	NM_001024142|Fbxo10|269529|F-box protein 10
mm9_v1_chr1_+_37356722_37356738	7.08629	GGCAGUG	AK162581|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	NM_030266|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I
mm9_v1_chr2_-_117168600_117168658	6.88239	GGCAGUG	BC057120|Rasgrp1|19419|RAS guanyl releasing protein 1	BC057341|Rasgrp1|19419|RAS guanyl releasing protein 1	NM_011246|Rasgrp1|19419|RAS guanyl releasing protein 1	AK134005|Rasgrp1|19419|RAS guanyl releasing protein 1	AK013548|Rasgrp1|19419|RAS guanyl releasing protein 1
mm9_v1_chr19_-_28057437_28057437	6.86251	GGCAGUG	NM_001166414|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr7_-_148615247_148615354	6.83253	GGCAGUG	AF243130|Cend1|57754|cell cycle exit and neuronal differentiation 1	AK005092|Cend1|57754|cell cycle exit and neuronal differentiation 1	BC023032|Cend1|57754|cell cycle exit and neuronal differentiation 1	AK079045|Cend1|57754|cell cycle exit and neuronal differentiation 1	NM_021316|Cend1|57754|cell cycle exit and neuronal differentiation 1
mm9_v1_chrX_-_133403050_133403118	6.78215	GGCAGUG	BC107383|Rab9b|319642|RAB9B, member RAS oncogene family	AK034442|Rab9b|319642|RAB9B, member RAS oncogene family	NM_176971|Rab9b|319642|RAB9B, member RAS oncogene family	AK049693|Rab9b|319642|RAB9B, member RAS oncogene family
mm9_v1_chr8_-_114457667_114457780	6.7246	GGCAGUG	BC100402|Tmem231|234740|transmembrane protein 231	AK155425|Tmem231|234740|transmembrane protein 231	NM_001033321|Tmem231|234740|transmembrane protein 231	AK030046|Tmem231|234740|transmembrane protein 231	BC132428|Tmem231|234740|transmembrane protein 231	BC132430|Tmem231|234740|transmembrane protein 231
mm9_v1_chr9_+_26559146_26559146	6.63952	GGCAGUG	BC034655|B3gat1|76898|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	NM_029792|B3gat1|76898|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)
mm9_v1_chr5_-_72049479_72049546	6.63252	GGCAGUG	AK141571|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK159299|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK013727|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	NM_010251|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4
mm9_v1_chr7_+_133415982_133416132	6.62096	GGCAGUG	BC031759|Sbk1|104175|SH3-binding kinase 1	NM_145587|Sbk1|104175|SH3-binding kinase 1
mm9_v1_chr11_-_119908236_119908480	6.52409	GGCAGUG	AY236858|Aatk|11302|apoptosis-associated tyrosine kinase	AY236859|Aatk|11302|apoptosis-associated tyrosine kinase	AB288871|Aatk|11302|apoptosis-associated tyrosine kinase	AB093253|Aatk|11302|apoptosis-associated tyrosine kinase	NM_001198785|Aatk|11302|apoptosis-associated tyrosine kinase	NM_007377|Aatk|11302|apoptosis-associated tyrosine kinase	BC042837|Aatk|11302|apoptosis-associated tyrosine kinase	BC052323|Aatk|11302|apoptosis-associated tyrosine kinase
mm9_v1_chr18_+_65739883_65739883	6.42829	GGCAGUG	BC067032|Zfp532|328977|zinc finger protein 532	NM_207255|Zfp532|328977|zinc finger protein 532
mm9_v1_chr8_-_72963464_72963487	6.42556	GGCAGUG	AK129173|Crtc1|382056|CREB regulated transcription coactivator 1	BC080308|Crtc1|382056|CREB regulated transcription coactivator 1	NM_001004062|Crtc1|382056|CREB regulated transcription coactivator 1	BC056137|Crtc1|382056|CREB regulated transcription coactivator 1	BC068139|Crtc1|382056|CREB regulated transcription coactivator 1
mm9_v1_chr1_+_10983542_10983609	6.3038	GGCAGUG	AK138884|Prex2|109294|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	AM109952|Prex2|109294|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	NM_029525|Prex2|109294|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm9_v1_chr15_-_66801198_66801204	6.18843	GGCAGUG	AK170439|Ndrg1|17988|N-myc downstream regulated gene 1	AK004548|Ndrg1|17988|N-myc downstream regulated gene 1	AK098075|Ndrg1|17988|N-myc downstream regulated gene 1	AK161860|Ndrg1|17988|N-myc downstream regulated gene 1	AK165007|Ndrg1|17988|N-myc downstream regulated gene 1	AK170281|Ndrg1|17988|N-myc downstream regulated gene 1	AK170636|Ndrg1|17988|N-myc downstream regulated gene 1	U60593|Ndrg1|17988|N-myc downstream regulated gene 1	AK170809|Ndrg1|17988|N-myc downstream regulated gene 1	NM_008681|Ndrg1|17988|N-myc downstream regulated gene 1
mm9_v1_chr7_+_146132386_146132432	6.18347	GGCAGUG	AK018189|Jakmip3|74004|janus kinase and microtubule interacting protein 3	AK220482|Jakmip3|74004|janus kinase and microtubule interacting protein 3	NM_028708|Jakmip3|74004|janus kinase and microtubule interacting protein 3
mm9_v1_chr2_+_35477498_35477550	6.15332	GGCAGUG	AK147593|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	NM_001114124|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr5_+_37259780_37259853	6.14768	GGCAGUG	AY348866|Ppp2r2c|269643|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform	BC059811|Ppp2r2c|269643|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform	NM_172994|Ppp2r2c|269643|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform
mm9_v1_chr12_+_25659777_25659836	5.978	GGCAGUG	AK021172|Kidins220|77480|kinase D-interacting substrate 220	NM_001081378|Kidins220|77480|kinase D-interacting substrate 220	BC157898|Kidins220|77480|kinase D-interacting substrate 220
mm9_v1_chr11_-_96691261_96691289	5.91684	GGCAGUG	AK152040|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	AK153529|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_008686|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr1_-_54251877_54252011	5.86067	GGCAGUG	AK042922|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_001001883|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_172655|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	AK047602|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm9_v1_chr10_+_99478457_99478639	5.84609	GGCAGUG	AK018777|Kitl|17311|kit ligand	NM_013598|Kitl|17311|kit ligand	U44725|Kitl|17311|kit ligand	AK134301|Kitl|17311|kit ligand	AK041961|Kitl|17311|kit ligand	AK165233|Kitl|17311|kit ligand	BC011322|Kitl|17311|kit ligand	M57647|Kitl|17311|kit ligand	S40364|Kitl|17311|kit ligand	S40534|Kitl|17311|kit ligand	S40536|Kitl|17311|kit ligand	M64262|Kitl|17311|kit ligand	X95379|Kitl|17311|kit ligand	X95380|Kitl|17311|kit ligand	X95381|Kitl|17311|kit ligand	X99322|Kitl|17311|kit ligand	Y10287|Kitl|17311|kit ligand	M59915|Kitl|17311|kit ligand
mm9_v1_chr2_+_35547418_35547513	5.82203	GGCAGUG	AY305657|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	NM_001001602|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr13_-_25029458_25029547	5.77191	GGCAGUG	AK051603|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	BC138703|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK159485|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK166313|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK144030|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK052703|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	NM_172532|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1
mm9_v1_chr3_+_129235284_129235325	5.7476	GGCAGUG	AK087440|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AK029029|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	NM_130450|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	BC051041|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AY053453|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm9_v1_chr8_-_63462080_63462110	5.72162	GGCAGUG	AK159698|Clcn3|12725|chloride channel 3	AK036501|Clcn3|12725|chloride channel 3	NM_007711|Clcn3|12725|chloride channel 3	NM_173873|Clcn3|12725|chloride channel 3	NM_173874|Clcn3|12725|chloride channel 3
mm9_v1_chr1_+_75378688_75378710	5.70172	GGCAGUG	NM_001085371|Speg|11790|SPEG complex locus	AK164360|Speg|11790|SPEG complex locus
mm9_v1_chr7_+_64846528_64846556	5.69605	GGCAGUG	AK083051|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	NM_008071|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm9_v1_chr15_-_79377170_79377216	5.6884	GGCAGUG	BC096036|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	NM_001040187|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	NM_199080|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
mm9_v1_chr5_-_121459496_121459582	5.67973	GGCAGUG	BC042585|Rph3a|19894|rabphilin 3A	NM_011286|Rph3a|19894|rabphilin 3A
mm9_v1_chr13_-_92901406_92901450	5.66928	GGCAGUG	NM_009027|Rasgrf2|19418|RAS protein-specific guanine nucleotide-releasing factor 2	U67326|Rasgrf2|19418|RAS protein-specific guanine nucleotide-releasing factor 2
mm9_v1_chr18_+_37849488_37849707	5.66452	GGCAGUG	BC054557|Pcdhgb2|93700|protocadherin gamma subfamily B, 2	NM_033575|Pcdhgb2|93700|protocadherin gamma subfamily B, 2	AY013805|Pcdhgb2|93700|protocadherin gamma subfamily B, 2
mm9_v1_chr2_+_28388947_28389056	5.6226	GGCAGUG	NM_001145835|Ralgds|19730|ral guanine nucleotide dissociation stimulator	NM_001145836|Ralgds|19730|ral guanine nucleotide dissociation stimulator	AK159020|Ralgds|19730|ral guanine nucleotide dissociation stimulator	AK159754|Ralgds|19730|ral guanine nucleotide dissociation stimulator
mm9_v1_chr11_+_105898183_105898284	5.54482	GGCAGUG	AK047435|Dcaf7|71833|DDB1 and CUL4 associated factor 7	NM_027946|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK005902|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK154757|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK165674|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK080823|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK137813|Dcaf7|71833|DDB1 and CUL4 associated factor 7	BC048722|Dcaf7|71833|DDB1 and CUL4 associated factor 7	BC048165|Dcaf7|71833|DDB1 and CUL4 associated factor 7
mm9_v1_chr19_-_58935470_58935484	5.51589	GGCAGUG	AY196789|Hspa12a|73442|heat shock protein 12A	AK141925|Hspa12a|73442|heat shock protein 12A	NM_175199|Hspa12a|73442|heat shock protein 12A
mm9_v1_chr17_+_26551909_26551909	5.51424	GGCAGUG	DQ839448|Neurl1b|240055|neuralized homolog 1b (Drosophila)	GQ414760|Neurl1b|240055|neuralized homolog 1b (Drosophila)	NM_001081656|Neurl1b|240055|neuralized homolog 1b (Drosophila)
mm9_v1_chr5_+_15440508_15440728	5.47386	GGCAGUG	AK164580|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110843|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110844|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110845|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110846|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_009784|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	AK084101|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73483|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73484|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73485|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73486|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73487|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	BC115871|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	AK052898|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm9_v1_chr13_+_76522408_76522408	5.4578	GGCAGUG	AK047562|Mctp1|78771|multiple C2 domains, transmembrane 1	NM_030174|Mctp1|78771|multiple C2 domains, transmembrane 1
mm9_v1_chr5_-_8367951_8368174	5.44262	GGCAGUG	BC117707|Adam22|11496|a disintegrin and metallopeptidase domain 22	BC117708|Adam22|11496|a disintegrin and metallopeptidase domain 22	HM004095|Adam22|11496|a disintegrin and metallopeptidase domain 22	AB009674|Adam22|11496|a disintegrin and metallopeptidase domain 22	AK082335|Adam22|11496|a disintegrin and metallopeptidase domain 22	NM_001007220|Adam22|11496|a disintegrin and metallopeptidase domain 22	NM_001007221|Adam22|11496|a disintegrin and metallopeptidase domain 22	NM_001098225|Adam22|11496|a disintegrin and metallopeptidase domain 22	AK042962|Adam22|11496|a disintegrin and metallopeptidase domain 22
mm9_v1_chr15_-_99358387_99358595	5.38652	GGCAGUG	AK158960|Faim2|72393|Fas apoptotic inhibitory molecule 2	NM_001038658|Faim2|72393|Fas apoptotic inhibitory molecule 2	NM_028224|Faim2|72393|Fas apoptotic inhibitory molecule 2	BC072560|Faim2|72393|Fas apoptotic inhibitory molecule 2
mm9_v1_chr1_+_75542840_75542910	5.36579	GGCAGUG	NM_009208|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3	BC080271|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3	M28383|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3
mm9_v1_chr8_+_86423968_86424035	5.33216	GGCAGUG	NM_181039|Lphn1|330814|latrophilin 1	AK147455|Lphn1|330814|latrophilin 1
mm9_v1_chr7_+_96781322_96781395	5.28586	GGCAGUG	AK032196|Me3|109264|malic enzyme 3, NADP(+)-dependent, mitochondrial	NM_181407|Me3|109264|malic enzyme 3, NADP(+)-dependent, mitochondrial	AK080798|Me3|109264|malic enzyme 3, NADP(+)-dependent, mitochondrial
mm9_v1_chr2_-_104250490_104250490	5.25043	GGCAGUG	NM_001033347|D430041D05Rik|241589|RIKEN cDNA D430041D05 gene
mm9_v1_chr1_-_37592976_37593103	5.24924	GGCAGUG	AB053217|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	AK163327|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	AK082702|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	NM_173870|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm9_v1_chr3_-_40886957_40886982	5.24533	GGCAGUG	NM_027558|Pgrmc2|70804|progesterone receptor membrane component 2
mm9_v1_chr7_-_149276174_149276174	5.2434	GGCAGUG	NM_008748|Dusp8|18218|dual specificity phosphatase 8	X95518|Dusp8|18218|dual specificity phosphatase 8
mm9_v1_chr8_+_124254462_124254503	5.22876	GGCAGUG	AB024449|Jph3|57340|junctophilin 3	NM_020605|Jph3|57340|junctophilin 3	AK046136|Jph3|57340|junctophilin 3	AK082880|Jph3|57340|junctophilin 3	AK045706|Jph3|57340|junctophilin 3	BC103682|Jph3|57340|junctophilin 3	BC104736|Jph3|57340|junctophilin 3	BC105307|Jph3|57340|junctophilin 3
mm9_v1_chr1_-_107253245_107253286	5.19054	GGCAGUG	AK044638|Rnf152|320311|ring finger protein 152	NM_001160368|Rnf152|320311|ring finger protein 152	NM_178779|Rnf152|320311|ring finger protein 152
mm9_v1_chr18_+_33098694_33098843	5.18366	GGCAGUG	NM_009793|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	AK030219|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	BC070420|Camk4|12326|calcium/calmodulin-dependent protein kinase IV
mm9_v1_chr3_+_31048841_31049071	5.17031	GGCAGUG	NM_008770|Cldn11|18417|claudin 11	AK005088|Cldn11|18417|claudin 11	AK005171|Cldn11|18417|claudin 11	AK161698|Cldn11|18417|claudin 11	BC021659|Cldn11|18417|claudin 11	U19582|Cldn11|18417|claudin 11	AF124426|Cldn11|18417|claudin 11
mm9_v1_chr3_-_88964078_88964108	5.13348	GGCAGUG	AJ225124|Hcn3|15168|hyperpolarization-activated, cyclic nucleotide-gated K+ 3	NM_008227|Hcn3|15168|hyperpolarization-activated, cyclic nucleotide-gated K+ 3	AK032225|Hcn3|15168|hyperpolarization-activated, cyclic nucleotide-gated K+ 3
mm9_v1_chr17_+_8533573_8533603	5.13252	GGCAGUG	AK039752|Prr18|320111|proline rich region 18	NM_178774|Prr18|320111|proline rich region 18
mm9_v1_chr11_+_102622745_102622752	5.13151	GGCAGUG	AK157926|Adam11|11488|a disintegrin and metallopeptidase domain 11	NM_001110778|Adam11|11488|a disintegrin and metallopeptidase domain 11	NM_009613|Adam11|11488|a disintegrin and metallopeptidase domain 11
mm9_v1_chrX_+_70587906_70588053	5.12001	GGCAGUG	NM_031494|Zfp275|27081|zinc finger protein 275	AK142957|Zfp275|27081|zinc finger protein 275	NM_001160229|Zfp275|27081|zinc finger protein 275	BC138002|Zfp275|27081|zinc finger protein 275	BC138003|Zfp275|27081|zinc finger protein 275
mm9_v1_chr8_+_77737842_77737842	5.10532	GGCAGUG	BC036988|Rasd2|75141|RASD family, member 2	NM_029182|Rasd2|75141|RASD family, member 2
mm9_v1_chr11_-_96690784_96690815	5.08792	GGCAGUG	AK154167|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	AK085935|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130450|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr18_+_37906739_37906841	5.04146	GGCAGUG	AY013793|Pcdhga10|93722|protocadherin gamma subfamily A, 10	NM_033593|Pcdhga10|93722|protocadherin gamma subfamily A, 10
mm9_v1_chr17_-_25073897_25073943	5.01401	GGCAGUG	BC068312|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AB005662|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AF262046|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AF178637|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	BC065105|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163447|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163448|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163449|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163450|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163451|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163453|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_013931|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3
mm9_v1_chrX_+_46823626_46823742	5.00073	GGCAGUG	NM_001081123|Arhgap36|75404|Rho GTPase activating protein 36	BC145645|Arhgap36|75404|Rho GTPase activating protein 36	AK048167|Arhgap36|75404|Rho GTPase activating protein 36
mm9_v1_chr18_+_37833939_37833988	4.91722	GGCAGUG	BC060691|Pcdhga3|93711|protocadherin gamma subfamily A, 3	NM_033586|Pcdhga3|93711|protocadherin gamma subfamily A, 3
mm9_v1_chr18_+_37844927_37845053	4.91623	GGCAGUG	BC049814|Pcdhga4|93712|protocadherin gamma subfamily A, 4	AY013798|Pcdhga4|93712|protocadherin gamma subfamily A, 4	NM_033587|Pcdhga4|93712|protocadherin gamma subfamily A, 4
mm9_v1_chr7_+_146574969_146575035	4.90818	GGCAGUG	BC056341|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	NM_001127363|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	NM_183144|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	AK083449|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	AK171360|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	AK171880|Inpp5a|212111|inositol polyphosphate-5-phosphatase A
mm9_v1_chr10_+_84380305_84380360	4.89429	GGCAGUG	BC051080|Ric8b|237422|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)	NM_183172|Ric8b|237422|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)
mm9_v1_chr11_+_103994160_103994195	4.8885	GGCAGUG	AK158806|Crhr1|12921|corticotropin releasing hormone receptor 1	NM_007762|Crhr1|12921|corticotropin releasing hormone receptor 1
mm9_v1_chr17_-_51972514_51972614	4.85679	GGCAGUG	BC011132|Satb1|20230|special AT-rich sequence binding protein 1	NM_001163632|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr18_+_37890662_37890807	4.82321	GGCAGUG	BC057403|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	AK156301|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	AY013807|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	NM_033577|Pcdhgb5|93702|protocadherin gamma subfamily B, 5
mm9_v1_chr18_+_37828606_37828758	4.78962	GGCAGUG	AB093250|Pcdhga2|93710|protocadherin gamma subfamily A, 2	BC139178|Pcdhga2|93710|protocadherin gamma subfamily A, 2	AY013796|Pcdhga2|93710|protocadherin gamma subfamily A, 2	NM_033585|Pcdhga2|93710|protocadherin gamma subfamily A, 2
mm9_v1_chr6_+_29867012_29867023	4.7895	GGCAGUG	AK041004|Fam40b|320609|family with sequence similarity 40, member B	AK042073|Fam40b|320609|family with sequence similarity 40, member B	AK052271|Fam40b|320609|family with sequence similarity 40, member B	AK163706|Fam40b|320609|family with sequence similarity 40, member B	NM_001037740|Fam40b|320609|family with sequence similarity 40, member B	NM_177204|Fam40b|320609|family with sequence similarity 40, member B	BC147502|Fam40b|320609|family with sequence similarity 40, member B	BC172034|Fam40b|320609|family with sequence similarity 40, member B
mm9_v1_chr18_+_37901716_37901894	4.7421	GGCAGUG	BC054556|Pcdhgb6|93703|protocadherin gamma subfamily B, 6	NM_033578|Pcdhgb6|93703|protocadherin gamma subfamily B, 6	AY013808|Pcdhgb6|93703|protocadherin gamma subfamily B, 6
mm9_v1_chr11_+_87405628_87405720	4.71748	GGCAGUG	AF262986|Mtmr4|170749|myotubularin related protein 4	NM_133215|Mtmr4|170749|myotubularin related protein 4	BC058091|Mtmr4|170749|myotubularin related protein 4	BC058364|Mtmr4|170749|myotubularin related protein 4
mm9_v1_chr9_+_21742717_21742717	4.70914	GGCAGUG	AY438023|BC018242|235044|cDNA sequence BC018242	BC018242|BC018242|235044|cDNA sequence BC018242	NM_144935|BC018242|235044|cDNA sequence BC018242
mm9_v1_chr18_+_37966017_37966102	4.70689	GGCAGUG	AK089310|Pcdhgc3|93706|protocadherin gamma subfamily C, 3	BC059175|Pcdhgc3|93706|protocadherin gamma subfamily C, 3	NM_033581|Pcdhgc3|93706|protocadherin gamma subfamily C, 3	BC098457|Pcdhgc3|93706|protocadherin gamma subfamily C, 3
mm9_v1_chr19_-_4906607_4906628	4.69633	GGCAGUG	AK037753|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	BC076577|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK161343|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK045850|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK168901|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	NM_001033128|Bbs1|52028|Bardet-Biedl syndrome 1 (human)
mm9_v1_chr18_+_37885359_37885546	4.692	GGCAGUG	BC054787|Pcdhga8|93716|protocadherin gamma subfamily A, 8	NM_033591|Pcdhga8|93716|protocadherin gamma subfamily A, 8	BC054555|Pcdhga8|93716|protocadherin gamma subfamily A, 8	AK220461|Pcdhga8|93716|protocadherin gamma subfamily A, 8	AY013802|Pcdhga8|93716|protocadherin gamma subfamily A, 8
mm9_v1_chr7_+_4873852_4873852	4.60137	GGCAGUG	AK158627|Nat14|269854|N-acetyltransferase 14	NM_201355|Nat14|269854|N-acetyltransferase 14
mm9_v1_chr12_+_4082573_4082658	4.55005	GGCAGUG	NM_153082|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	BC051140|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	AK049300|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	BC042643|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27
mm9_v1_chr18_+_37915375_37915594	4.54336	GGCAGUG	BC064675|Pcdhga11|93723|protocadherin gamma subfamily A, 11	NM_033594|Pcdhga11|93723|protocadherin gamma subfamily A, 11	BC059837|Pcdhga11|93723|protocadherin gamma subfamily A, 11	AY013794|Pcdhga11|93723|protocadherin gamma subfamily A, 11
mm9_v1_chr12_-_82633781_82633909	4.53982	GGCAGUG	AY138960|Synj2bp|24071|synaptojanin 2 binding protein	BC027433|Synj2bp|24071|synaptojanin 2 binding protein	AK013474|Synj2bp|24071|synaptojanin 2 binding protein	AK163362|Synj2bp|24071|synaptojanin 2 binding protein	AK008254|Synj2bp|24071|synaptojanin 2 binding protein	AY566156|Synj2bp|24071|synaptojanin 2 binding protein	AK008054|Synj2bp|24071|synaptojanin 2 binding protein	AK078422|Synj2bp|24071|synaptojanin 2 binding protein	AK030379|Synj2bp|24071|synaptojanin 2 binding protein	AK033514|Synj2bp|24071|synaptojanin 2 binding protein	NM_025292|Synj2bp|24071|synaptojanin 2 binding protein
mm9_v1_chr18_+_65183180_65183324	4.5251	GGCAGUG	NM_031881|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr9_+_51573434_51573478	4.49941	GGCAGUG	AK082060|Arhgap20|244867|Rho GTPase activating protein 20	AK046916|Arhgap20|244867|Rho GTPase activating protein 20	AK040756|Arhgap20|244867|Rho GTPase activating protein 20	NM_175535|Arhgap20|244867|Rho GTPase activating protein 20	AK035563|Arhgap20|244867|Rho GTPase activating protein 20
mm9_v1_chr18_+_37839910_37840111	4.49901	GGCAGUG	BC054741|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	BC098367|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	AY013804|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	NM_033574|Pcdhgb1|93699|protocadherin gamma subfamily B, 1
mm9_v1_chr6_-_126690651_126690691	4.49076	GGCAGUG	NM_013568|Kcna6|16494|potassium voltage-gated channel, shaker-related, subfamily, member 6
mm9_v1_chr1_-_93355893_93355916	4.46469	GGCAGUG	AK159847|Per2|18627|period homolog 2 (Drosophila)	AK165556|Per2|18627|period homolog 2 (Drosophila)	NM_011066|Per2|18627|period homolog 2 (Drosophila)
mm9_v1_chr18_-_32109233_32109289	4.44272	GGCAGUG	BC070439|Gpr17|574402|G protein-coupled receptor 17	NM_001025381|Gpr17|574402|G protein-coupled receptor 17
mm9_v1_chr11_-_118770873_118770885	4.41368	GGCAGUG	AK079086|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	NM_001024931|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	NM_001039167|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	NM_001039168|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3
mm9_v1_chr18_+_37911236_37911432	4.40557	GGCAGUG	BC066823|Pcdhgb7|93704|protocadherin gamma subfamily B, 7	AY013809|Pcdhgb7|93704|protocadherin gamma subfamily B, 7	NM_033579|Pcdhgb7|93704|protocadherin gamma subfamily B, 7
mm9_v1_chr9_+_103014374_103014418	4.40261	GGCAGUG	BC060618|Rab6b|270192|RAB6B, member RAS oncogene family	NM_173781|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr18_+_37896589_37896589	4.39015	GGCAGUG	BC079567|Pcdhga9|93717|protocadherin gamma subfamily A, 9	NM_033592|Pcdhga9|93717|protocadherin gamma subfamily A, 9
mm9_v1_chr5_+_91946651_91946764	4.37232	GGCAGUG	AK148300|Parm1|231440|prostate androgen-regulated mucin-like protein 1	AK078943|Parm1|231440|prostate androgen-regulated mucin-like protein 1	BC006604|Parm1|231440|prostate androgen-regulated mucin-like protein 1	NM_145562|Parm1|231440|prostate androgen-regulated mucin-like protein 1	AK167402|Parm1|231440|prostate androgen-regulated mucin-like protein 1	AK161172|Parm1|231440|prostate androgen-regulated mucin-like protein 1	AK078862|Parm1|231440|prostate androgen-regulated mucin-like protein 1
mm9_v1_chr3_+_82161952_82161996	4.35557	GGCAGUG	AK138540|Mtap9|213582|microtubule-associated protein 9	AK038737|Mtap9|213582|microtubule-associated protein 9	NM_001081230|Mtap9|213582|microtubule-associated protein 9
mm9_v1_chr14_-_122196929_122196955	4.31652	GGCAGUG	NM_134074|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr6_-_118147735_118147761	4.31125	GGCAGUG	BC059012|Ret|19713|ret proto-oncogene	NM_001080780|Ret|19713|ret proto-oncogene	NM_009050|Ret|19713|ret proto-oncogene
mm9_v1_chr11_-_33893151_33893192	4.27321	GGCAGUG	AK048178|Kcnip1|70357|Kv channel-interacting protein 1	AK081845|Kcnip1|70357|Kv channel-interacting protein 1	DQ148494|Kcnip1|70357|Kv channel-interacting protein 1	NM_001190886|Kcnip1|70357|Kv channel-interacting protein 1
mm9_v1_chr1_+_196446006_196446022	4.20251	GGCAGUG	NM_008882|Plxna2|18845|plexin A2
mm9_v1_chr2_+_28368603_28368686	4.20139	GGCAGUG	NM_001145834|Ralgds|19730|ral guanine nucleotide dissociation stimulator	NM_009058|Ralgds|19730|ral guanine nucleotide dissociation stimulator
mm9_v1_chr9_+_74918979_74919024	4.17558	GGCAGUG	AK032713|Myo5a|17918|myosin VA	NM_010864|Myo5a|17918|myosin VA
mm9_v1_chr18_+_37921454_37921532	4.17151	GGCAGUG	BC139099|Pcdhgb8|93705|protocadherin gamma subfamily B, 8	BC139100|Pcdhgb8|93705|protocadherin gamma subfamily B, 8	NM_033580|Pcdhgb8|93705|protocadherin gamma subfamily B, 8	AY013810|Pcdhgb8|93705|protocadherin gamma subfamily B, 8
mm9_v1_chr11_-_121249511_121249580	4.16455	GGCAGUG	BC096601|Rab40b|217371|Rab40b, member RAS oncogene family	NM_139147|Rab40b|217371|Rab40b, member RAS oncogene family
mm9_v1_chr18_+_37925233_37925233	4.09734	GGCAGUG	BC056998|Pcdhga12|93724|protocadherin gamma subfamily A, 12	NM_033595|Pcdhga12|93724|protocadherin gamma subfamily A, 12
mm9_v1_chr18_+_37874471_37874595	4.09525	GGCAGUG	AK034910|Pcdhga7|93715|protocadherin gamma subfamily A, 7	BC077712|Pcdhga7|93715|protocadherin gamma subfamily A, 7	NM_033590|Pcdhga7|93715|protocadherin gamma subfamily A, 7	AY013801|Pcdhga7|93715|protocadherin gamma subfamily A, 7
mm9_v1_chr18_+_37821598_37821598	4.07812	GGCAGUG	AY013792|Pcdhga1|93709|protocadherin gamma subfamily A, 1	NM_033584|Pcdhga1|93709|protocadherin gamma subfamily A, 1
mm9_v1_chr7_-_148008029_148008088	4.07789	GGCAGUG	BC068250|Zfp941|407812|zinc finger protein 941	BC066028|Zfp941|407812|zinc finger protein 941	AK045889|Zfp941|407812|zinc finger protein 941	AK141045|Zfp941|407812|zinc finger protein 941	NM_001001180|Zfp941|407812|zinc finger protein 941
mm9_v1_chr5_+_123300153_123300232	4.01299	GGCAGUG	AK132330|Rnf34|80751|ring finger protein 34	BC004042|Rnf34|80751|ring finger protein 34	NM_030564|Rnf34|80751|ring finger protein 34	AK045696|Rnf34|80751|ring finger protein 34	AK046381|Rnf34|80751|ring finger protein 34	AK077221|Rnf34|80751|ring finger protein 34	AK150976|Rnf34|80751|ring finger protein 34	AK046274|Rnf34|80751|ring finger protein 34	AK159753|Rnf34|80751|ring finger protein 34	AK137606|Rnf34|80751|ring finger protein 34
mm9_v1_chr6_-_113145321_113145377	3.97709	GGCAGUG	AK220449|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	BC085130|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	AK046437|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	NM_177763|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4
mm9_v1_chr6_-_50516456_50516542	3.96147	GGCAGUG	BC034363|Cycs|13063|cytochrome c, somatic	BC094054|Cycs|13063|cytochrome c, somatic	AK088098|Cycs|13063|cytochrome c, somatic	AK143887|Cycs|13063|cytochrome c, somatic	NM_007808|Cycs|13063|cytochrome c, somatic	AK002732|Cycs|13063|cytochrome c, somatic	AK168017|Cycs|13063|cytochrome c, somatic	AK010651|Cycs|13063|cytochrome c, somatic	AK003168|Cycs|13063|cytochrome c, somatic	AK005336|Cycs|13063|cytochrome c, somatic
mm9_v1_chr10_-_57252252_57252346	3.95106	GGCAGUG	AF181685|Serinc1|56442|serine incorporator 1	AK148745|Serinc1|56442|serine incorporator 1	AK050514|Serinc1|56442|serine incorporator 1	AB029500|Serinc1|56442|serine incorporator 1	AK088340|Serinc1|56442|serine incorporator 1	AK133668|Serinc1|56442|serine incorporator 1	AK133975|Serinc1|56442|serine incorporator 1	AK161707|Serinc1|56442|serine incorporator 1	AK005203|Serinc1|56442|serine incorporator 1	AK167817|Serinc1|56442|serine incorporator 1	AK002847|Serinc1|56442|serine incorporator 1	AK141574|Serinc1|56442|serine incorporator 1	AK160498|Serinc1|56442|serine incorporator 1	AK159436|Serinc1|56442|serine incorporator 1	BC006940|Serinc1|56442|serine incorporator 1	NM_019760|Serinc1|56442|serine incorporator 1
mm9_v1_chr18_+_37979199_37979219	3.91876	GGCAGUG	AF464163|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	NM_033583|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	AF464164|Pcdhgb4|93701|protocadherin gamma subfamily B, 4
mm9_v1_chr3_-_107889507_107889627	3.89972	GGCAGUG	BC049119|Ampd2|109674|adenosine monophosphate deaminase 2	NM_028779|Ampd2|109674|adenosine monophosphate deaminase 2	AK169980|Ampd2|109674|adenosine monophosphate deaminase 2	AK004759|Ampd2|109674|adenosine monophosphate deaminase 2
mm9_v1_chr18_+_37866747_37866882	3.89817	GGCAGUG	BC059927|Pcdhga6|93714|protocadherin gamma subfamily A, 6	BC080852|Pcdhga6|93714|protocadherin gamma subfamily A, 6	AY013800|Pcdhga6|93714|protocadherin gamma subfamily A, 6	NM_033589|Pcdhga6|93714|protocadherin gamma subfamily A, 6
mm9_v1_chr18_+_37880036_37880207	3.86544	GGCAGUG	AK083581|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	BC138701|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	AY013806|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	NM_033576|Pcdhgb4|93701|protocadherin gamma subfamily B, 4
mm9_v1_chr2_+_124436031_124436031	3.84899	GGCAGUG	AB091532|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_172537|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199238|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199239|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199240|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199241|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr11_+_100870759_100870810	3.81654	GGCAGUG	NM_016920|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK029316|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AF218249|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK036530|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK158786|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC066839|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC071182|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC001995|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1
mm9_v1_chr2_+_119625249_119625324	3.80464	GGCAGUG	BC066058|Tyro3|22174|TYRO3 protein tyrosine kinase 3	NM_019392|Tyro3|22174|TYRO3 protein tyrosine kinase 3	BC082325|Tyro3|22174|TYRO3 protein tyrosine kinase 3	X78103|Tyro3|22174|TYRO3 protein tyrosine kinase 3	U18933|Tyro3|22174|TYRO3 protein tyrosine kinase 3
mm9_v1_chr13_-_8870231_8870293	3.80123	GGCAGUG	AK129254|Wdr37|207615|WD repeat domain 37	AK032582|Wdr37|207615|WD repeat domain 37	AK146209|Wdr37|207615|WD repeat domain 37	AK014128|Wdr37|207615|WD repeat domain 37	AK044740|Wdr37|207615|WD repeat domain 37	AK036203|Wdr37|207615|WD repeat domain 37	NM_001039389|Wdr37|207615|WD repeat domain 37	NM_172445|Wdr37|207615|WD repeat domain 37
mm9_v1_chr2_+_179177132_179177182	3.7986	GGCAGUG	BC047991|Cdh4|12561|cadherin 4	NM_009867|Cdh4|12561|cadherin 4
mm9_v1_chr2_-_79969095_79969127	3.79452	GGCAGUG	BC090628|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AK043647|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_016744|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chr5_-_5380077_5380250	3.78042	GGCAGUG	AK129226|Cdk14|18647|cyclin-dependent kinase 14	AK016370|Cdk14|18647|cyclin-dependent kinase 14	AK051411|Cdk14|18647|cyclin-dependent kinase 14	AK083790|Cdk14|18647|cyclin-dependent kinase 14	AF033655|Cdk14|18647|cyclin-dependent kinase 14	AK051283|Cdk14|18647|cyclin-dependent kinase 14	AK045083|Cdk14|18647|cyclin-dependent kinase 14	NM_011074|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr15_-_77949709_77949709	3.74619	GGCAGUG	AF077739|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2	NM_007583|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2
mm9_v1_chr19_-_7180162_7180222	3.74549	GGCAGUG	AY495668|Flrt1|396184|fibronectin leucine rich transmembrane protein 1	AK031503|Flrt1|396184|fibronectin leucine rich transmembrane protein 1	NM_201411|Flrt1|396184|fibronectin leucine rich transmembrane protein 1	BC070403|Flrt1|396184|fibronectin leucine rich transmembrane protein 1
mm9_v1_chr2_+_21289168_21289199	3.73632	GGCAGUG	AK083234|Gpr158|241263|G protein-coupled receptor 158	AK086256|Gpr158|241263|G protein-coupled receptor 158	NM_001004761|Gpr158|241263|G protein-coupled receptor 158	AK030530|Gpr158|241263|G protein-coupled receptor 158
mm9_v1_chr10_+_34001987_34002104	3.73342	GGCAGUG	NM_009433|Tspyl1|22110|testis-specific protein, Y-encoded-like 1	AK159432|Tspyl1|22110|testis-specific protein, Y-encoded-like 1	AK166438|Tspyl1|22110|testis-specific protein, Y-encoded-like 1	AF042180|Tspyl1|22110|testis-specific protein, Y-encoded-like 1	AK053812|Tspyl1|22110|testis-specific protein, Y-encoded-like 1	BC011213|Tspyl1|22110|testis-specific protein, Y-encoded-like 1	AK166805|Tspyl1|22110|testis-specific protein, Y-encoded-like 1	AK166893|Tspyl1|22110|testis-specific protein, Y-encoded-like 1
mm9_v1_chr5_+_31117077_31117214	3.71648	GGCAGUG	BC048833|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	AF468005|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	BC057918|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	NM_133350|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	AK177097|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3
mm9_v1_chrX_+_140127827_140127856	3.69321	GGCAGUG	AF082297|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195046|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195047|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AJ496262|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AJ496263|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AM943853|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AM943854|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr4_-_41720928_41721082	3.65889	GGCAGUG	BC099574|Ccl27a|20301|chemokine (C-C motif) ligand 27A	NM_001164045|Ccl27a|20301|chemokine (C-C motif) ligand 27A	NM_001048179|Ccl27a|20301|chemokine (C-C motif) ligand 27A	NM_001164044|Ccl27a|20301|chemokine (C-C motif) ligand 27A
mm9_v1_chr8_-_70498472_70498472	3.6343	GGCAGUG	AB220685|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_177698|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr11_+_98603186_98603266	3.61051	GGCAGUG	AK078233|Thra|21833|thyroid hormone receptor alpha	NM_178060|Thra|21833|thyroid hormone receptor alpha	BC046795|Thra|21833|thyroid hormone receptor alpha
mm9_v1_chr4_-_122638401_122638432	3.58326	GGCAGUG	BC060526|Mfsd2a|76574|major facilitator superfamily domain containing 2A	BC046793|Mfsd2a|76574|major facilitator superfamily domain containing 2A	AK006096|Mfsd2a|76574|major facilitator superfamily domain containing 2A	NM_029662|Mfsd2a|76574|major facilitator superfamily domain containing 2A
mm9_v1_chr12_+_113960379_113960418	3.56797	GGCAGUG	NM_001024602|AW555464|217882|expressed sequence AW555464	AK122236|AW555464|217882|expressed sequence AW555464
mm9_v1_chr6_-_91757386_91757427	3.56387	GGCAGUG	NM_001159507|Grip2|243547|glutamate receptor interacting protein 2
mm9_v1_chr19_-_6128133_6128278	3.55974	GGCAGUG	BC016091|Snx15|69024|sorting nexin 15	NM_026912|Snx15|69024|sorting nexin 15
mm9_v1_chr10_-_110447050_110447195	3.55569	GGCAGUG	BC027101|Zdhhc17|320150|zinc finger, DHHC domain containing 17	AK162922|Zdhhc17|320150|zinc finger, DHHC domain containing 17	BC080664|Zdhhc17|320150|zinc finger, DHHC domain containing 17	BC058772|Zdhhc17|320150|zinc finger, DHHC domain containing 17	AK046891|Zdhhc17|320150|zinc finger, DHHC domain containing 17	BC117788|Zdhhc17|320150|zinc finger, DHHC domain containing 17	BC117789|Zdhhc17|320150|zinc finger, DHHC domain containing 17	AK038670|Zdhhc17|320150|zinc finger, DHHC domain containing 17	AK038681|Zdhhc17|320150|zinc finger, DHHC domain containing 17	AK134967|Zdhhc17|320150|zinc finger, DHHC domain containing 17	AK039575|Zdhhc17|320150|zinc finger, DHHC domain containing 17	NM_172554|Zdhhc17|320150|zinc finger, DHHC domain containing 17	AK122406|Zdhhc17|320150|zinc finger, DHHC domain containing 17
mm9_v1_chr14_-_122097583_122097657	3.55107	GGCAGUG	BC157964|Dock9|105445|dedicator of cytokinesis 9	NM_001081039|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr7_-_4796261_4796301	3.52188	GGCAGUG	NM_172737|Shisa7|232813|shisa homolog 7 (Xenopus laevis)
mm9_v1_chr15_-_79635138_79635146	3.44408	GGCAGUG	BC058962|Nptxr|73340|neuronal pentraxin receptor	BC098199|Nptxr|73340|neuronal pentraxin receptor	NM_030689|Nptxr|73340|neuronal pentraxin receptor	AK147605|Nptxr|73340|neuronal pentraxin receptor
mm9_v1_chr2_-_134469806_134469920	3.43331	GGCAGUG	BC138168|Tmx4|52837|thioredoxin-related transmembrane protein 4	BC138169|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK040779|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK147465|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK129301|Tmx4|52837|thioredoxin-related transmembrane protein 4	BC054558|Tmx4|52837|thioredoxin-related transmembrane protein 4	NM_029148|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK015667|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK053897|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK030696|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK172572|Tmx4|52837|thioredoxin-related transmembrane protein 4
mm9_v1_chr4_+_155367019_155367119	3.42173	GGCAGUG	D50461|Sdf4|20318|stromal cell derived factor 4	BC068152|Sdf4|20318|stromal cell derived factor 4	NM_011341|Sdf4|20318|stromal cell derived factor 4	AK090319|Sdf4|20318|stromal cell derived factor 4	U45977|Sdf4|20318|stromal cell derived factor 4
mm9_v1_chr5_-_113444509_113444571	3.3914	GGCAGUG	AK172513|Adrbk2|320129|adrenergic receptor kinase, beta 2	AK048763|Adrbk2|320129|adrenergic receptor kinase, beta 2	AK134672|Adrbk2|320129|adrenergic receptor kinase, beta 2	AK141186|Adrbk2|320129|adrenergic receptor kinase, beta 2	NM_001035531|Adrbk2|320129|adrenergic receptor kinase, beta 2	NM_177078|Adrbk2|320129|adrenergic receptor kinase, beta 2
mm9_v1_chr7_+_106683983_106683997	3.38443	GGCAGUG	AK147508|Arrb1|109689|arrestin, beta 1	NM_177231|Arrb1|109689|arrestin, beta 1	NM_178220|Arrb1|109689|arrestin, beta 1
mm9_v1_chr19_+_8994860_8994941	3.3784	GGCAGUG	AK144402|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	BC004038|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	NM_024256|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	AK048428|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	BC012930|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	AK140424|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)
mm9_v1_chr11_-_94902584_94902717	3.37395	GGCAGUG	AF267660|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	AK002647|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	BC021764|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	NM_133667|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2
mm9_v1_chr8_+_107064705_107064811	3.35884	GGCAGUG	AK090390|Car7|12354|carbonic anhydrase 7	AY075021|Car7|12354|carbonic anhydrase 7	NM_053070|Car7|12354|carbonic anhydrase 7	BC094913|Car7|12354|carbonic anhydrase 7	AF291660|Car7|12354|carbonic anhydrase 7
mm9_v1_chr17_+_93598761_93598761	3.35775	GGCAGUG	BC057344|Adcyap1|11516|adenylate cyclase activating polypeptide 1	NM_009625|Adcyap1|11516|adenylate cyclase activating polypeptide 1
mm9_v1_chr13_-_8870975_8870975	3.31645	GGCAGUG	NM_001039388|Wdr37|207615|WD repeat domain 37
mm9_v1_chr18_+_37854011_37854154	3.30254	GGCAGUG	AK043161|Pcdhga5|93713|protocadherin gamma subfamily A, 5	BC057404|Pcdhga5|93713|protocadherin gamma subfamily A, 5	AK043491|Pcdhga5|93713|protocadherin gamma subfamily A, 5	AY013799|Pcdhga5|93713|protocadherin gamma subfamily A, 5	NM_033588|Pcdhga5|93713|protocadherin gamma subfamily A, 5
mm9_v1_chr9_+_107465568_107465700	3.29828	GGCAGUG	AK082684|Tusc2|80385|tumor suppressor candidate 2	BC048477|Tusc2|80385|tumor suppressor candidate 2	NM_019742|Tusc2|80385|tumor suppressor candidate 2	AK004430|Tusc2|80385|tumor suppressor candidate 2	AF123387|Tusc2|80385|tumor suppressor candidate 2
mm9_v1_chr4_-_47487233_47487247	3.29588	GGCAGUG	NM_019998|Alg2|56737|asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)
mm9_v1_chr2_+_134611879_134611910	3.2644	GGCAGUG	AK143153|Plcb1|18795|phospholipase C, beta 1	NM_001145830|Plcb1|18795|phospholipase C, beta 1	NM_019677|Plcb1|18795|phospholipase C, beta 1	AK040911|Plcb1|18795|phospholipase C, beta 1
mm9_v1_chr17_-_26158762_26158804	3.2441	GGCAGUG	AK052775|Rab11fip3|215445|RAB11 family interacting protein 3 (class II)	BC023364|Rab11fip3|215445|RAB11 family interacting protein 3 (class II)	AK085516|Rab11fip3|215445|RAB11 family interacting protein 3 (class II)	AK128985|Rab11fip3|215445|RAB11 family interacting protein 3 (class II)	NM_153140|Rab11fip3|215445|RAB11 family interacting protein 3 (class II)
mm9_v1_chr15_-_3945704_3945774	3.24241	GGCAGUG	AK045350|AW549877|106064|expressed sequence AW549877	AK154940|AW549877|106064|expressed sequence AW549877	NM_145930|AW549877|106064|expressed sequence AW549877
mm9_v1_chr10_+_13686174_13686209	3.24048	GGCAGUG	AK147244|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147348|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147655|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	NM_010437|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2
mm9_v1_chr1_+_164500694_164500958	3.21509	GGCAGUG	AK018344|Vamp4|53330|vesicle-associated membrane protein 4	AK002977|Vamp4|53330|vesicle-associated membrane protein 4	AK011678|Vamp4|53330|vesicle-associated membrane protein 4	AK031151|Vamp4|53330|vesicle-associated membrane protein 4	NM_016796|Vamp4|53330|vesicle-associated membrane protein 4
mm9_v1_chr11_+_4773977_4774007	3.19983	GGCAGUG	AK031804|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)	AK013140|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)	AK147786|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)	AJ001260|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)	NM_008698|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)	BC010837|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)
mm9_v1_chr13_+_88961034_88961117	3.19643	GGCAGUG	AF031525|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK046885|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	NM_001037987|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	NM_010103|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK157810|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK141907|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK135220|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK139093|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK036117|Edil3|13612|EGF-like repeats and discoidin I-like domains 3
mm9_v1_chr7_-_133225924_133225942	3.16387	GGCAGUG	AK082731|Gsg1l|269994|GSG1-like	NM_001101488|Gsg1l|269994|GSG1-like
mm9_v1_chr2_+_35413977_35414092	3.15228	GGCAGUG	NM_001114125|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	DQ473307|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr16_-_14159346_14159388	3.10265	GGCAGUG	AK158881|4921513D23Rik|223989|RIKEN cDNA 4921513D23 gene	NM_001081154|4921513D23Rik|223989|RIKEN cDNA 4921513D23 gene
mm9_v1_chr10_+_84380371_84380454	3.07174	GGCAGUG	AY940666|Ric8b|237422|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)	AY940667|Ric8b|237422|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)	NM_001013441|Ric8b|237422|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)	AK132369|Ric8b|237422|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)
mm9_v1_chrX_+_139997806_139997811	3.05439	GGCAGUG	NM_008778|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	BC053403|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chrX_-_54756877_54756933	3.04659	GGCAGUG	AK138185|Gpr101|245424|G protein-coupled receptor 101	DQ198079|Gpr101|245424|G protein-coupled receptor 101	AK138370|Gpr101|245424|G protein-coupled receptor 101	NM_001033360|Gpr101|245424|G protein-coupled receptor 101
mm9_v1_chr18_+_65047408_65047414	3.04575	GGCAGUG	NM_001114386|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr18_+_37974732_37974732	3.00437	GGCAGUG	BC064808|Pcdhgc4|93707|protocadherin gamma subfamily C, 4	NM_033582|Pcdhgc4|93707|protocadherin gamma subfamily C, 4
mm9_v1_chrX_-_92853721_92853847	3.00244	GGCAGUG	AK129302|Zc4h2|245522|zinc finger, C4H2 domain containing	AK162005|Zc4h2|245522|zinc finger, C4H2 domain containing	AK086554|Zc4h2|245522|zinc finger, C4H2 domain containing	BC050850|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119285|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119311|Zc4h2|245522|zinc finger, C4H2 domain containing	BC079862|Zc4h2|245522|zinc finger, C4H2 domain containing	NM_001003916|Zc4h2|245522|zinc finger, C4H2 domain containing	AK155445|Zc4h2|245522|zinc finger, C4H2 domain containing
mm9_v1_chr14_-_17407701_17408109	2.97396	GGCAGUG	AK078471|Rarb|218772|retinoic acid receptor, beta	NM_011243|Rarb|218772|retinoic acid receptor, beta	S92180|Rarb|218772|retinoic acid receptor, beta	S56660|Rarb|218772|retinoic acid receptor, beta	AK054178|Rarb|218772|retinoic acid receptor, beta	BC076597|Rarb|218772|retinoic acid receptor, beta	X56573|Rarb|218772|retinoic acid receptor, beta
mm9_v1_chr18_+_61265225_61265605	2.95535	GGCAGUG	AK146069|Csf1r|12978|colony stimulating factor 1 receptor	NM_001037859|Csf1r|12978|colony stimulating factor 1 receptor	BC066863|Csf1r|12978|colony stimulating factor 1 receptor	BC050024|Csf1r|12978|colony stimulating factor 1 receptor	AK171241|Csf1r|12978|colony stimulating factor 1 receptor	AK156550|Csf1r|12978|colony stimulating factor 1 receptor	AK155565|Csf1r|12978|colony stimulating factor 1 receptor	AK155488|Csf1r|12978|colony stimulating factor 1 receptor	AK079247|Csf1r|12978|colony stimulating factor 1 receptor	AK155576|Csf1r|12978|colony stimulating factor 1 receptor	AK155858|Csf1r|12978|colony stimulating factor 1 receptor	AK154128|Csf1r|12978|colony stimulating factor 1 receptor	AK155640|Csf1r|12978|colony stimulating factor 1 receptor	AK155654|Csf1r|12978|colony stimulating factor 1 receptor	AK171386|Csf1r|12978|colony stimulating factor 1 receptor	AK004947|Csf1r|12978|colony stimulating factor 1 receptor	AK154556|Csf1r|12978|colony stimulating factor 1 receptor	AK154653|Csf1r|12978|colony stimulating factor 1 receptor	AK154699|Csf1r|12978|colony stimulating factor 1 receptor	AK076215|Csf1r|12978|colony stimulating factor 1 receptor	AK143545|Csf1r|12978|colony stimulating factor 1 receptor	X06368|Csf1r|12978|colony stimulating factor 1 receptor	X68932|Csf1r|12978|colony stimulating factor 1 receptor	AK080326|Csf1r|12978|colony stimulating factor 1 receptor	BC043054|Csf1r|12978|colony stimulating factor 1 receptor	AK089498|Csf1r|12978|colony stimulating factor 1 receptor	AK171543|Csf1r|12978|colony stimulating factor 1 receptor	BC036343|Csf1r|12978|colony stimulating factor 1 receptor	AK041299|Csf1r|12978|colony stimulating factor 1 receptor
mm9_v1_chr9_+_107302196_107302210	2.94873	GGCAGUG	BC056389|Cacna2d2|56808|calcium channel, voltage-dependent, alpha 2/delta subunit 2	NM_001174047|Cacna2d2|56808|calcium channel, voltage-dependent, alpha 2/delta subunit 2	NM_001174048|Cacna2d2|56808|calcium channel, voltage-dependent, alpha 2/delta subunit 2	NM_001174049|Cacna2d2|56808|calcium channel, voltage-dependent, alpha 2/delta subunit 2	NM_001174050|Cacna2d2|56808|calcium channel, voltage-dependent, alpha 2/delta subunit 2	NM_020263|Cacna2d2|56808|calcium channel, voltage-dependent, alpha 2/delta subunit 2
mm9_v1_chrX_-_140367467_140367853	2.93383	GGCAGUG	AY560329|Dcx|13193|doublecortin	AK048410|Dcx|13193|doublecortin	AF045547|Dcx|13193|doublecortin	AK164119|Dcx|13193|doublecortin	BC056391|Dcx|13193|doublecortin	AK049050|Dcx|13193|doublecortin	NM_001110222|Dcx|13193|doublecortin	BC057010|Dcx|13193|doublecortin	BC062974|Dcx|13193|doublecortin	AK014264|Dcx|13193|doublecortin	NM_001110223|Dcx|13193|doublecortin	NM_001110224|Dcx|13193|doublecortin	NM_010025|Dcx|13193|doublecortin	AB011678|Dcx|13193|doublecortin
mm9_v1_chr11_-_60988490_60988572	2.90768	GGCAGUG	AK220368|Usp22|216825|ubiquitin specific peptidase 22	AK040187|Usp22|216825|ubiquitin specific peptidase 22	AK034492|Usp22|216825|ubiquitin specific peptidase 22	AK155071|Usp22|216825|ubiquitin specific peptidase 22	NM_001004143|Usp22|216825|ubiquitin specific peptidase 22
mm9_v1_chr12_-_77811533_77811533	2.90115	GGCAGUG	AK147299|Spnb1|20741|spectrin beta 1	NM_013675|Spnb1|20741|spectrin beta 1
mm9_v1_chr16_+_20589654_20589675	2.89122	GGCAGUG	AK141799|Vwa5b2|328643|von Willebrand factor A domain containing 5B2	NM_001144953|Vwa5b2|328643|von Willebrand factor A domain containing 5B2	NM_182636|Vwa5b2|328643|von Willebrand factor A domain containing 5B2
mm9_v1_chr13_+_41345120_41345273	2.88205	GGCAGUG	NM_001135577|BC024659|108934|cDNA sequence BC024659	BC066054|BC024659|108934|cDNA sequence BC024659	BC094222|BC024659|108934|cDNA sequence BC024659
mm9_v1_chr11_-_107772661_107772675	2.85818	GGCAGUG	BC120894|Cacng5|140723|calcium channel, voltage-dependent, gamma subunit 5	BC120895|Cacng5|140723|calcium channel, voltage-dependent, gamma subunit 5	AK032548|Cacng5|140723|calcium channel, voltage-dependent, gamma subunit 5	NM_080644|Cacng5|140723|calcium channel, voltage-dependent, gamma subunit 5
mm9_v1_chr9_-_77956353_77956477	2.84744	GGCAGUG	AK018482|Fbxo9|71538|f-box protein 9	AB041585|Fbxo9|71538|f-box protein 9	BC020074|Fbxo9|71538|f-box protein 9	NM_023605|Fbxo9|71538|f-box protein 9
mm9_v1_chr4_+_99602038_99602162	2.84517	GGCAGUG	AK152678|Pgm2|72157|phosphoglucomutase 2	AK152923|Pgm2|72157|phosphoglucomutase 2	NM_028132|Pgm2|72157|phosphoglucomutase 2	AK147982|Pgm2|72157|phosphoglucomutase 2	BC080801|Pgm2|72157|phosphoglucomutase 2	BC055713|Pgm2|72157|phosphoglucomutase 2	BC008527|Pgm2|72157|phosphoglucomutase 2	AK011485|Pgm2|72157|phosphoglucomutase 2	BC086490|Pgm2|72157|phosphoglucomutase 2
mm9_v1_chr6_-_145024596_145024703	2.83791	GGCAGUG	BC053706|Bcat1|12035|branched chain aminotransferase 1, cytosolic	X17502|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK167232|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK166971|Bcat1|12035|branched chain aminotransferase 1, cytosolic	NM_007532|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK168249|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr4_-_104782444_104782511	2.79484	GGCAGUG	NM_178143|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit	BC138565|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit	BC138566|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit
mm9_v1_chr2_+_73150702_73150790	2.79041	GGCAGUG	NM_029022|Scrn3|74616|secernin 3	AK143725|Scrn3|74616|secernin 3	AK165936|Scrn3|74616|secernin 3	BC139390|Scrn3|74616|secernin 3	BC139391|Scrn3|74616|secernin 3	AK014701|Scrn3|74616|secernin 3	AK050521|Scrn3|74616|secernin 3	AK028703|Scrn3|74616|secernin 3
mm9_v1_chr7_+_116154373_116154494	2.78364	GGCAGUG	AK165720|Tub|22141|tubby candidate gene	NM_021885|Tub|22141|tubby candidate gene	U52433|Tub|22141|tubby candidate gene	BC096554|Tub|22141|tubby candidate gene	U54643|Tub|22141|tubby candidate gene
mm9_v1_chr14_-_122138082_122138150	2.77794	GGCAGUG	BC158050|Dock9|105445|dedicator of cytokinesis 9	AK122431|Dock9|105445|dedicator of cytokinesis 9	NM_001128307|Dock9|105445|dedicator of cytokinesis 9	NM_001128308|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr15_+_81641832_81641859	2.77655	GGCAGUG	NM_017376|Tef|21685|thyrotroph embryonic factor	AY540631|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr8_-_42140113_42140147	2.77268	GGCAGUG	BC043321|Mtus1|102103|mitochondrial tumor suppressor 1	AK043214|Mtus1|102103|mitochondrial tumor suppressor 1	AY626782|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005864|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr2_-_23904890_23904898	2.74633	GGCAGUG	BC033928|Hnmt|140483|histamine N-methyltransferase	AB070524|Hnmt|140483|histamine N-methyltransferase	AF297037|Hnmt|140483|histamine N-methyltransferase	NM_080462|Hnmt|140483|histamine N-methyltransferase
mm9_v1_chr4_+_57580989_57581153	2.73501	GGCAGUG	AK045344|Palm2|242481|paralemmin 2	NM_172868|Palm2|242481|paralemmin 2	BC113156|Palm2|242481|paralemmin 2
mm9_v1_chr19_-_57290515_57290521	2.73339	GGCAGUG	BC141083|Ablim1|226251|actin-binding LIM protein 1	AF404774|Ablim1|226251|actin-binding LIM protein 1	NM_178688|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr3_-_88229007_88229060	2.69621	GGCAGUG	BC052771|Slc25a44|229517|solute carrier family 25, member 44	AK166331|Slc25a44|229517|solute carrier family 25, member 44	AK169886|Slc25a44|229517|solute carrier family 25, member 44	AK044648|Slc25a44|229517|solute carrier family 25, member 44	AK046586|Slc25a44|229517|solute carrier family 25, member 44	AK079532|Slc25a44|229517|solute carrier family 25, member 44	AK165159|Slc25a44|229517|solute carrier family 25, member 44	AK083470|Slc25a44|229517|solute carrier family 25, member 44	AK083273|Slc25a44|229517|solute carrier family 25, member 44	AK144731|Slc25a44|229517|solute carrier family 25, member 44	AK166011|Slc25a44|229517|solute carrier family 25, member 44	AK168955|Slc25a44|229517|solute carrier family 25, member 44	AK032960|Slc25a44|229517|solute carrier family 25, member 44	AK134914|Slc25a44|229517|solute carrier family 25, member 44	NM_001145876|Slc25a44|229517|solute carrier family 25, member 44	NM_001145877|Slc25a44|229517|solute carrier family 25, member 44	NM_178696|Slc25a44|229517|solute carrier family 25, member 44
mm9_v1_chr2_+_118502976_118503018	2.66956	GGCAGUG	NM_001145854|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6	AK028788|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6	AK145601|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6
mm9_v1_chr1_-_73062445_73062472	2.64751	GGCAGUG	X12521|Tnp1|21958|transition protein 1	AK006495|Tnp1|21958|transition protein 1	BC061170|Tnp1|21958|transition protein 1	BC048494|Tnp1|21958|transition protein 1	NM_009407|Tnp1|21958|transition protein 1
mm9_v1_chr6_-_144997311_144997331	2.63179	GGCAGUG	AK036309|Bcat1|12035|branched chain aminotransferase 1, cytosolic	NM_001024468|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr11_-_72016872_72016872	2.62391	GGCAGUG	BC043106|4933427D14Rik|74477|RIKEN cDNA 4933427D14 gene	NM_028963|4933427D14Rik|74477|RIKEN cDNA 4933427D14 gene
mm9_v1_chr9_-_57315800_57315896	2.6194	GGCAGUG	AF241833|Scamp5|56807|secretory carrier membrane protein 5	BC018613|Scamp5|56807|secretory carrier membrane protein 5	NM_020270|Scamp5|56807|secretory carrier membrane protein 5
mm9_v1_chr7_-_11080687_11080731	2.60199	GGCAGUG	BC050942|Zik1|22775|zinc finger protein interacting with K protein 1	BC067196|Zik1|22775|zinc finger protein interacting with K protein 1	AK159077|Zik1|22775|zinc finger protein interacting with K protein 1	AK146692|Zik1|22775|zinc finger protein interacting with K protein 1	U69133|Zik1|22775|zinc finger protein interacting with K protein 1	NM_009577|Zik1|22775|zinc finger protein interacting with K protein 1
mm9_v1_chr19_+_5050805_5050813	2.59879	GGCAGUG	BC011277|Rin1|225870|Ras and Rab interactor 1	NM_145495|Rin1|225870|Ras and Rab interactor 1
mm9_v1_chr2_+_20441139_20441459	2.5773	GGCAGUG	NM_001177630|Etl4|208618|enhancer trap locus 4	NM_001177631|Etl4|208618|enhancer trap locus 4	AK147510|Etl4|208618|enhancer trap locus 4	AB093289|Etl4|208618|enhancer trap locus 4	BC158051|Etl4|208618|enhancer trap locus 4	BC172143|Etl4|208618|enhancer trap locus 4	BC050016|Etl4|208618|enhancer trap locus 4	AK052733|Etl4|208618|enhancer trap locus 4
mm9_v1_chr1_+_89652645_89652774	2.57358	GGCAGUG	AK030983|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	NM_029846|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK145673|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK155358|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK163246|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK170073|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	BC049122|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK048873|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK005181|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087879|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087880|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087881|Atg16l1|77040|autophagy-related 16-like 1 (yeast)
mm9_v1_chr5_-_103640272_103640352	2.53769	GGCAGUG	AK036275|Mapk10|26414|mitogen-activated protein kinase 10	BC046625|Mapk10|26414|mitogen-activated protein kinase 10	AK163206|Mapk10|26414|mitogen-activated protein kinase 10	AK076990|Mapk10|26414|mitogen-activated protein kinase 10	BC026697|Mapk10|26414|mitogen-activated protein kinase 10	AK082242|Mapk10|26414|mitogen-activated protein kinase 10	NM_001081567|Mapk10|26414|mitogen-activated protein kinase 10	NM_009158|Mapk10|26414|mitogen-activated protein kinase 10
mm9_v1_chr2_+_118489312_118489451	2.53595	GGCAGUG	BC079572|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6	NM_001033254|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6	BC150754|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6
mm9_v1_chr18_+_34380575_34380671	2.53464	GGCAGUG	AK042021|Apc|11789|adenomatosis polyposis coli	AK080907|Apc|11789|adenomatosis polyposis coli	NM_007462|Apc|11789|adenomatosis polyposis coli	AK046280|Apc|11789|adenomatosis polyposis coli	AK045053|Apc|11789|adenomatosis polyposis coli
mm9_v1_chr9_+_54434140_54434327	2.52252	GGCAGUG	AK158646|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK159051|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK117103|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK152353|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK159666|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK160054|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK150618|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK164038|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168149|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK167822|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK151304|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK153459|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168049|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK010065|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK032787|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK047951|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168034|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK084523|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	BC049956|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	NM_029573|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK169152|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	BC034273|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha
mm9_v1_chr1_-_163806710_163806814	2.51473	GGCAGUG	BC138379|AI848100|226551|expressed sequence AI848100	AK171856|AI848100|226551|expressed sequence AI848100	NM_172645|AI848100|226551|expressed sequence AI848100
mm9_v1_chr9_-_77956833_77956859	2.51384	GGCAGUG	AK077607|Fbxo9|71538|f-box protein 9	NM_001081490|Fbxo9|71538|f-box protein 9
mm9_v1_chr17_-_24342446_24342565	2.47668	GGCAGUG	AK036088|Tbc1d24|224617|TBC1 domain family, member 24	AK129304|Tbc1d24|224617|TBC1 domain family, member 24	AK084693|Tbc1d24|224617|TBC1 domain family, member 24	AK086293|Tbc1d24|224617|TBC1 domain family, member 24	AK138431|Tbc1d24|224617|TBC1 domain family, member 24	AK045194|Tbc1d24|224617|TBC1 domain family, member 24	AK083833|Tbc1d24|224617|TBC1 domain family, member 24	AK049754|Tbc1d24|224617|TBC1 domain family, member 24	AK147647|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163847|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163848|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163849|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163850|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163851|Tbc1d24|224617|TBC1 domain family, member 24	NM_173186|Tbc1d24|224617|TBC1 domain family, member 24	AK172594|Ntn3|18209|netrin 3
mm9_v1_chr2_+_69660426_69660529	2.4763	GGCAGUG	BC072626|Klhl23|277396|kelch-like 23 (Drosophila)	NM_177784|Klhl23|277396|kelch-like 23 (Drosophila)	AK048518|Klhl23|277396|kelch-like 23 (Drosophila)
mm9_v1_chr19_-_46470175_46470258	2.4645	GGCAGUG	BC007131|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK010632|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AB010297|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	NM_016860|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK019518|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK168889|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK088062|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK167450|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK162248|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
mm9_v1_chr5_+_43624701_43624701	2.44975	GGCAGUG	NM_001177379|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2	NM_175937|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2
mm9_v1_chrX_+_140100287_140100287	2.44587	GGCAGUG	NM_001195049|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	U39738|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chrX_-_130223380_130223542	2.4225	GGCAGUG	AK046726|Pcdh19|279653|protocadherin 19	NM_001105245|Pcdh19|279653|protocadherin 19	NM_001105246|Pcdh19|279653|protocadherin 19
mm9_v1_chr11_-_61393108_61393198	2.41943	GGCAGUG	AK195274|Epn2|13855|epsin 2	AK139793|Epn2|13855|epsin 2	BC039138|Epn2|13855|epsin 2	NM_010148|Epn2|13855|epsin 2	AK036331|Epn2|13855|epsin 2	AK173093|Epn2|13855|epsin 2	AK139234|Epn2|13855|epsin 2	AK160782|Epn2|13855|epsin 2
mm9_v1_chr5_-_124545776_124545806	2.41707	GGCAGUG	AK044140|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	AB093298|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	BC026455|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	AF216495|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	NM_019875|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9
mm9_v1_chr2_-_32237343_32237498	2.41426	GGCAGUG	AK079725|1110008P14Rik|73737|RIKEN cDNA 1110008P14 gene	BC049639|1110008P14Rik|73737|RIKEN cDNA 1110008P14 gene	AK081091|1110008P14Rik|73737|RIKEN cDNA 1110008P14 gene	AK003598|1110008P14Rik|73737|RIKEN cDNA 1110008P14 gene	BC024615|1110008P14Rik|73737|RIKEN cDNA 1110008P14 gene	NM_198001|1110008P14Rik|73737|RIKEN cDNA 1110008P14 gene
mm9_v1_chr13_+_9275741_9275783	2.41077	GGCAGUG	NM_001081426|Dip2c|208440|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm9_v1_chr7_+_114514258_114514338	2.40462	GGCAGUG	AK089115|Syt9|60510|synaptotagmin IX	NM_021889|Syt9|60510|synaptotagmin IX	AK156631|Syt9|60510|synaptotagmin IX	BC132495|Syt9|60510|synaptotagmin IX	BC137904|Syt9|60510|synaptotagmin IX	BC145024|Syt9|60510|synaptotagmin IX
mm9_v1_chr15_-_79664645_79664773	2.39386	GGCAGUG	BC011199|Cbx6|494448|chromobox homolog 6	BC048240|Cbx6|494448|chromobox homolog 6	AK004679|Cbx6|494448|chromobox homolog 6	AK090253|Cbx6|494448|chromobox homolog 6	AK146048|Cbx6|494448|chromobox homolog 6	AK146103|Cbx6|494448|chromobox homolog 6	AY394488|Npcd|504193|neuronal pentraxin chromo domain	AY394489|Npcd|504193|neuronal pentraxin chromo domain	AY395907|Npcd|504193|neuronal pentraxin chromo domain	AK035250|Cbx6|494448|chromobox homolog 6	NM_001013360|Npcd|504193|neuronal pentraxin chromo domain	NM_001013362|Npcd|504193|neuronal pentraxin chromo domain	NM_028763|Cbx6|494448|chromobox homolog 6
mm9_v1_chr11_-_33743416_33743626	2.38255	GGCAGUG	AY647242|Kcnip1|70357|Kv channel-interacting protein 1	AY171234|Kcnip1|70357|Kv channel-interacting protein 1	BC034241|Kcnip1|70357|Kv channel-interacting protein 1	DQ148493|Kcnip1|70357|Kv channel-interacting protein 1	AK013657|Kcnip1|70357|Kv channel-interacting protein 1	AK014313|Kcnip1|70357|Kv channel-interacting protein 1	AK046398|Kcnip1|70357|Kv channel-interacting protein 1	AK045948|Kcnip1|70357|Kv channel-interacting protein 1	NM_001190885|Kcnip1|70357|Kv channel-interacting protein 1	NM_027398|Kcnip1|70357|Kv channel-interacting protein 1
mm9_v1_chr9_-_26837634_26837702	2.35727	GGCAGUG	AK155578|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	AK171154|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	BC049180|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	AK031589|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	NM_178027|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)
mm9_v1_chr2_-_5635547_5635807	2.35216	GGCAGUG	AK053173|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK170123|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK170777|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	NM_177343|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK147616|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID
mm9_v1_chr7_+_17460662_17460665	2.35017	GGCAGUG	DQ832319|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)	NM_001081655|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm9_v1_chr7_+_148748077_148748100	2.34441	GGCAGUG	NM_007459|Ap2a2|11772|adaptor protein complex AP-2, alpha 2 subunit
mm9_v1_chr18_-_12464213_12464228	2.33785	GGCAGUG	NM_001190371|Ankrd29|225187|ankyrin repeat domain 29
mm9_v1_chr19_+_16207300_16207320	2.3358	GGCAGUG	AK147393|Gnaq|14682|guanine nucleotide binding protein, alpha q polypeptide	NM_008139|Gnaq|14682|guanine nucleotide binding protein, alpha q polypeptide
mm9_v1_chr8_+_85387234_85387370	2.31569	GGCAGUG	AK032722|Rnf150|330812|ring finger protein 150	AK041412|Rnf150|330812|ring finger protein 150	NM_177378|Rnf150|330812|ring finger protein 150	AK220374|Rnf150|330812|ring finger protein 150
mm9_v1_chr19_-_6915038_6915131	2.31299	GGCAGUG	AK195314|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	AF074714|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	NM_019924|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	AK089467|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	AK154674|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	BC012964|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4
mm9_v1_chr11_+_4886860_4887033	2.28734	GGCAGUG	AK155892|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	NM_007454|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	AK165747|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	AK170376|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	AK159273|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	AK160042|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	Y07919|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	BC008513|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	AK180383|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit
mm9_v1_chr7_+_16683891_16684052	2.27303	GGCAGUG	AK050623|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK171998|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	BC004804|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK013895|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK004826|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK005372|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK136689|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	NM_025898|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha
mm9_v1_chr8_+_96334452_96334737	2.27113	GGCAGUG	AK160434|Gnao1|14681|guanine nucleotide binding protein, alpha O	AK035907|Gnao1|14681|guanine nucleotide binding protein, alpha O	NM_001113384|Gnao1|14681|guanine nucleotide binding protein, alpha O	NM_010308|Gnao1|14681|guanine nucleotide binding protein, alpha O
mm9_v1_chr19_-_40476799_40476801	2.25023	GGCAGUG	NM_001034964|Sorbs1|20411|sorbin and SH3 domain containing 1	AK146712|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr1_-_89051599_89051601	2.2376	GGCAGUG	AB026294|Ecel1|13599|endothelin converting enzyme-like 1	BC057569|Ecel1|13599|endothelin converting enzyme-like 1	NM_021306|Ecel1|13599|endothelin converting enzyme-like 1
mm9_v1_chr6_+_86799460_86799754	2.21324	GGCAGUG	AK147363|Aak1|269774|AP2 associated kinase 1	NM_001040106|Aak1|269774|AP2 associated kinase 1	NM_177762|Aak1|269774|AP2 associated kinase 1	AK158879|Aak1|269774|AP2 associated kinase 1	BC141176|Aak1|269774|AP2 associated kinase 1
mm9_v1_chr1_+_108068405_108068445	2.19395	GGCAGUG	NM_133821|Phlpp1|98432|PH domain and leucine rich repeat protein phosphatase 1
mm9_v1_chr13_+_114584715_114584832	2.17033	GGCAGUG	NM_172595|Arl15|218639|ADP-ribosylation factor-like 15	AK039965|Arl15|218639|ADP-ribosylation factor-like 15	AK052164|Arl15|218639|ADP-ribosylation factor-like 15	AK053953|Arl15|218639|ADP-ribosylation factor-like 15	AK050979|Arl15|218639|ADP-ribosylation factor-like 15	BC120664|Arl15|218639|ADP-ribosylation factor-like 15	BC120666|Arl15|218639|ADP-ribosylation factor-like 15	BC144993|Arl15|218639|ADP-ribosylation factor-like 15	AK048736|Arl15|218639|ADP-ribosylation factor-like 15
mm9_v1_chr15_+_81633102_81633182	2.16042	GGCAGUG	NM_153484|Tef|21685|thyrotroph embryonic factor	AK045575|Tef|21685|thyrotroph embryonic factor	AK053229|Tef|21685|thyrotroph embryonic factor	AK027965|Tef|21685|thyrotroph embryonic factor	AK141606|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr10_+_62442963_62442971	2.15949	GGCAGUG	AK045485|Rufy2|70432|RUN and FYVE domain-containing 2	NM_027425|Rufy2|70432|RUN and FYVE domain-containing 2
mm9_v1_chr9_-_45792865_45792953	2.14311	GGCAGUG	AK164573|2610005M20Rik|70308|RIKEN cDNA 2610005M20 gene	AK012116|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	U57747|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	AK012164|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	BC003771|2610005M20Rik|70308|RIKEN cDNA 2610005M20 gene	BC002037|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	BC056211|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	AK011326|2610005M20Rik|70308|RIKEN cDNA 2610005M20 gene	AK153424|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	NM_008775|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
mm9_v1_chr5_-_135554038_135554160	2.14155	GGCAGUG	BC044789|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AK158287|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AK090181|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AY081953|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AY352519|Vps37d|194309|vacuolar protein sorting 37D (yeast)	NM_177574|Vps37d|194309|vacuolar protein sorting 37D (yeast)
mm9_v1_chr2_-_166539288_166539340	2.13457	GGCAGUG	AK156208|Prex1|277360|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	AK173168|Prex1|277360|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	NM_177782|Prex1|277360|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
mm9_v1_chr17_-_24336901_24336901	2.13275	GGCAGUG	AK049306|Tbc1d24|224617|TBC1 domain family, member 24	AK161054|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163852|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163853|Tbc1d24|224617|TBC1 domain family, member 24
mm9_v1_chr9_-_122775060_122775123	2.12266	GGCAGUG	BC099930|Zfp445|235682|zinc finger protein 445	NM_173364|Zfp445|235682|zinc finger protein 445
mm9_v1_chr12_-_86492150_86492213	2.11736	GGCAGUG	BC027298|Rps6kl1|238323|ribosomal protein S6 kinase-like 1	BC024798|Rps6kl1|238323|ribosomal protein S6 kinase-like 1	AK031847|Rps6kl1|238323|ribosomal protein S6 kinase-like 1	AK082169|Rps6kl1|238323|ribosomal protein S6 kinase-like 1	AK044050|Rps6kl1|238323|ribosomal protein S6 kinase-like 1	NM_146244|Rps6kl1|238323|ribosomal protein S6 kinase-like 1
mm9_v1_chr19_+_53404935_53404935	2.11498	GGCAGUG	L38821|Mxi1|17859|Max interacting protein 1	NM_001008543|Mxi1|17859|Max interacting protein 1
mm9_v1_chr19_-_57271875_57272120	2.07806	GGCAGUG	AF404775|Ablim1|226251|actin-binding LIM protein 1	AK143907|Ablim1|226251|actin-binding LIM protein 1	NM_001103177|Ablim1|226251|actin-binding LIM protein 1	AK122196|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr2_-_152158370_152158374	2.06475	GGCAGUG	BC034555|Rbck1|24105|RanBP-type and C3HC4-type zinc finger containing 1	NM_019705|Rbck1|24105|RanBP-type and C3HC4-type zinc finger containing 1
mm9_v1_chr1_-_153937364_153937449	2.04855	GGCAGUG	AK144357|LOC545371|545371|hypothetical protein LOC545371	NM_197990|1700025G04Rik|69399|RIKEN cDNA 1700025G04 gene
mm9_v1_chr13_-_56397911_56397962	2.03141	GGCAGUG	AB041614|Cxcl14|57266|chemokine (C-X-C motif) ligand 14	AF192557|Cxcl14|57266|chemokine (C-X-C motif) ligand 14	AF252873|Cxcl14|57266|chemokine (C-X-C motif) ligand 14	NM_019568|Cxcl14|57266|chemokine (C-X-C motif) ligand 14
mm9_v1_chr4_+_155265932_155266005	2.02931	GGCAGUG	AK147505|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	BC067016|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	NM_207223|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm9_v1_chr2_+_48669628_48669670	1.99437	GGCAGUG	NM_007396|Acvr2a|11480|activin receptor IIA	AK081022|Acvr2a|11480|activin receptor IIA
mm9_v1_chr2_+_109533719_109533771	1.98862	GGCAGUG	AY057914|Bdnf|12064|brain derived neurotrophic factor	EF125674|Bdnf|12064|brain derived neurotrophic factor	NM_001048142|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr11_+_82202401_82202479	1.98014	GGCAGUG	NM_023438|Tmem132e|270893|transmembrane protein 132E	BC137906|Tmem132e|270893|transmembrane protein 132E	BC145026|Tmem132e|270893|transmembrane protein 132E
mm9_v1_chr5_-_124666426_124666426	1.96457	GGCAGUG	AF058693|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2	NM_011256|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2
mm9_v1_chr13_+_108834624_108834692	1.95762	GGCAGUG	BC069965|2810008M24Rik|75616|RIKEN cDNA 2810008M24 gene	AK088529|2810008M24Rik|75616|RIKEN cDNA 2810008M24 gene	AK139507|2810008M24Rik|75616|RIKEN cDNA 2810008M24 gene	NM_001048250|2810008M24Rik|75616|RIKEN cDNA 2810008M24 gene
mm9_v1_chr2_-_25174662_25174740	1.93596	GGCAGUG	AK090286|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_001177656|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_001177657|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_008169|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)
mm9_v1_chr7_+_24866915_24866972	1.93436	GGCAGUG	AK144892|Zfp180|210135|zinc finger protein 180	AK083802|Zfp180|210135|zinc finger protein 180	BC085472|Zfp180|210135|zinc finger protein 180	AK145004|Zfp180|210135|zinc finger protein 180	BC066115|Zfp180|210135|zinc finger protein 180	AK141922|Zfp180|210135|zinc finger protein 180	NM_001045486|Zfp180|210135|zinc finger protein 180	AK154182|Zfp180|210135|zinc finger protein 180	BC063741|Zfp180|210135|zinc finger protein 180
mm9_v1_chr8_+_91220921_91220958	1.92589	GGCAGUG	NM_001128170|Cyld|74256|cylindromatosis (turban tumor syndrome)	NM_001128171|Cyld|74256|cylindromatosis (turban tumor syndrome)	NM_173369|Cyld|74256|cylindromatosis (turban tumor syndrome)	NM_001128169|Cyld|74256|cylindromatosis (turban tumor syndrome)	AK122389|Cyld|74256|cylindromatosis (turban tumor syndrome)	AK147204|Cyld|74256|cylindromatosis (turban tumor syndrome)
mm9_v1_chrX_-_100103981_100104025	1.92479	GGCAGUG	DQ316772|Dmrtc1a|70887|DMRT-like family C1a	BC147175|Dmrtc1a|70887|DMRT-like family C1a	BC147176|Dmrtc1a|70887|DMRT-like family C1a	AK014934|Dmrtc1a|70887|DMRT-like family C1a	NM_027591|Dmrtc1a|70887|DMRT-like family C1a
mm9_v1_chr15_-_100416795_100416795	1.90808	GGCAGUG	BC059830|Pou6f1|19009|POU domain, class 6, transcription factor 1	NM_010127|Pou6f1|19009|POU domain, class 6, transcription factor 1
mm9_v1_chr11_+_61890494_61890602	1.90374	GGCAGUG	AK050982|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1	AK220465|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1	NM_001029936|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1
mm9_v1_chrX_-_100101807_100101896	1.89892	GGCAGUG	DQ316773|Dmrtc1a|70887|DMRT-like family C1a	DQ316774|Dmrtc1a|70887|DMRT-like family C1a	NM_029378|Dmrtc1a|70887|DMRT-like family C1a	NM_001038616|Dmrtc1a|70887|DMRT-like family C1a	AK006548|Dmrtc1a|70887|DMRT-like family C1a
mm9_v1_chr19_-_40525876_40525887	1.89592	GGCAGUG	AF078666|Sorbs1|20411|sorbin and SH3 domain containing 1	AF078667|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_001034962|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_001034963|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr9_-_58884114_58884258	1.89323	GGCAGUG	Y09535|Neo1|18007|neogenin	BC054540|Neo1|18007|neogenin	AK084609|Neo1|18007|neogenin	NM_001042752|Neo1|18007|neogenin	NM_008684|Neo1|18007|neogenin
mm9_v1_chr2_-_30952019_30952019	1.89206	GGCAGUG	AK143512|Fnbp1|14269|formin binding protein 1	NM_001177650|Fnbp1|14269|formin binding protein 1
mm9_v1_chr2_+_91043016_91043106	1.86481	GGCAGUG	NM_007387|Acp2|11432|acid phosphatase 2, lysosomal	AK170658|Acp2|11432|acid phosphatase 2, lysosomal	AK133756|Acp2|11432|acid phosphatase 2, lysosomal	AK154269|Acp2|11432|acid phosphatase 2, lysosomal	AK128963|Acp2|11432|acid phosphatase 2, lysosomal	BC013495|Acp2|11432|acid phosphatase 2, lysosomal	AK089401|Acp2|11432|acid phosphatase 2, lysosomal	BC023343|Acp2|11432|acid phosphatase 2, lysosomal	X57199|Acp2|11432|acid phosphatase 2, lysosomal
mm9_v1_chr6_-_39327637_39327722	1.8607	GGCAGUG	BC099673|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK076213|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK077836|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK167716|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	BC005744|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK145242|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	NM_028123|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3
mm9_v1_chr2_-_7002344_7002370	1.84611	GGCAGUG	NM_001110229|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110230|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160292|Celf2|14007|CUGBP, Elav-like family member 2	AK159996|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr3_+_121426422_121426632	1.84472	GGCAGUG	BC024886|F3|14066|coagulation factor III	NM_010171|F3|14066|coagulation factor III	BC016397|F3|14066|coagulation factor III	M26071|F3|14066|coagulation factor III	AK137642|F3|14066|coagulation factor III	AK144872|F3|14066|coagulation factor III	M57896|F3|14066|coagulation factor III	CT010367|F3|14066|coagulation factor III
mm9_v1_chrX_+_45265614_45265652	1.83944	GGCAGUG	AK047906|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK035315|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK041963|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK044320|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK138269|Ocrl|320634|oculocerebrorenal syndrome of Lowe	BC068146|Ocrl|320634|oculocerebrorenal syndrome of Lowe	NM_177215|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK028306|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK044488|Ocrl|320634|oculocerebrorenal syndrome of Lowe
mm9_v1_chr4_+_59818521_59818521	1.78431	GGCAGUG	AK147437|Snx30|209131|sorting nexin family member 30	NM_172468|Snx30|209131|sorting nexin family member 30
mm9_v1_chr2_-_152158111_152158185	1.78138	GGCAGUG	AK146176|Rbck1|24105|RanBP-type and C3HC4-type zinc finger containing 1	AK088591|Rbck1|24105|RanBP-type and C3HC4-type zinc finger containing 1	AK166075|Rbck1|24105|RanBP-type and C3HC4-type zinc finger containing 1	AK085559|Rbck1|24105|RanBP-type and C3HC4-type zinc finger containing 1	NM_001083921|Rbck1|24105|RanBP-type and C3HC4-type zinc finger containing 1
mm9_v1_chr11_-_3763899_3763908	1.77577	GGCAGUG	AK049816|Osbp2|74309|oxysterol binding protein 2	NM_152818|Osbp2|74309|oxysterol binding protein 2
mm9_v1_chr14_-_56290697_56290758	1.77413	GGCAGUG	D10918|Nedd8|18002|neural precursor cell expressed, developmentally down-regulated gene 8	AK147080|Nedd8|18002|neural precursor cell expressed, developmentally down-regulated gene 8	BC004625|Nedd8|18002|neural precursor cell expressed, developmentally down-regulated gene 8	AK146732|Nedd8|18002|neural precursor cell expressed, developmentally down-regulated gene 8	NM_008683|Nedd8|18002|neural precursor cell expressed, developmentally down-regulated gene 8
mm9_v1_chr1_+_120285634_120285634	1.75998	GGCAGUG	AK042402|Clasp1|76707|CLIP associating protein 1	NM_001081276|Clasp1|76707|CLIP associating protein 1	NM_029709|Clasp1|76707|CLIP associating protein 1	NM_177548|Clasp1|76707|CLIP associating protein 1
mm9_v1_chrX_+_139952975_139953253	1.75162	GGCAGUG	AK158893|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195048|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AK031853|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr1_-_36502079_36502124	1.75121	GGCAGUG	AK142024|Lman2l|214895|lectin, mannose-binding 2-like	BC046969|Lman2l|214895|lectin, mannose-binding 2-like	NM_001013374|Lman2l|214895|lectin, mannose-binding 2-like	BC027226|Lman2l|214895|lectin, mannose-binding 2-like	AK158015|Lman2l|214895|lectin, mannose-binding 2-like
mm9_v1_chr2_+_173563060_173563229	1.74567	GGCAGUG	BC048231|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	NM_019806|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	BC057123|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK050632|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK081908|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AF115504|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK160925|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK172080|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chrX_+_138662479_138662479	1.74503	GGCAGUG	NM_001161430|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chr6_-_42274556_42274690	1.74294	GGCAGUG	AK163654|Fam131b|76156|family with sequence similarity 131, member B	AK047763|Fam131b|76156|family with sequence similarity 131, member B	AK018206|Fam131b|76156|family with sequence similarity 131, member B	AK018325|Fam131b|76156|family with sequence similarity 131, member B	AK158869|Fam131b|76156|family with sequence similarity 131, member B	NM_001113327|Fam131b|76156|family with sequence similarity 131, member B	NM_029528|Fam131b|76156|family with sequence similarity 131, member B
mm9_v1_chr2_+_37298785_37298902	1.7427	GGCAGUG	NM_146121|Rabgap1|227800|RAB GTPase activating protein 1	AK031315|Rabgap1|227800|RAB GTPase activating protein 1	AK021286|Rabgap1|227800|RAB GTPase activating protein 1	BC138337|Rabgap1|227800|RAB GTPase activating protein 1
mm9_v1_chr10_-_120748244_120748244	1.73587	GGCAGUG	NM_029057|Tbc1d30|74694|TBC1 domain family, member 30
mm9_v1_chr15_+_100299408_100299504	1.73307	GGCAGUG	NM_134093|Letmd1|68614|LETM1 domain containing 1	AK158718|Letmd1|68614|LETM1 domain containing 1
mm9_v1_chr7_+_114710946_114710987	1.71965	GGCAGUG	NM_172907|Olfml1|244198|olfactomedin-like 1	BC047207|Olfml1|244198|olfactomedin-like 1	AK032948|Olfml1|244198|olfactomedin-like 1
mm9_v1_chr6_-_106750030_106750092	1.71555	GGCAGUG	AF229032|Crbn|58799|cereblon	BC069905|Crbn|58799|cereblon	BC033458|Crbn|58799|cereblon	BC086488|Crbn|58799|cereblon	AK032836|Crbn|58799|cereblon	AK075959|Crbn|58799|cereblon	AK141428|Crbn|58799|cereblon	AK076144|Crbn|58799|cereblon	AK077707|Crbn|58799|cereblon	AK160219|Crbn|58799|cereblon	AK050557|Crbn|58799|cereblon	NM_021449|Crbn|58799|cereblon	NM_175357|Crbn|58799|cereblon
mm9_v1_chr7_-_31935974_31936116	1.66294	GGCAGUG	AK150032|Gramd1a|52857|GRAM domain containing 1A	AK150196|Gramd1a|52857|GRAM domain containing 1A	AK150837|Gramd1a|52857|GRAM domain containing 1A	AK151987|Gramd1a|52857|GRAM domain containing 1A	AK152294|Gramd1a|52857|GRAM domain containing 1A	AK083837|Gramd1a|52857|GRAM domain containing 1A	AK004885|Gramd1a|52857|GRAM domain containing 1A	AK154821|Gramd1a|52857|GRAM domain containing 1A	NM_027898|Gramd1a|52857|GRAM domain containing 1A
mm9_v1_chr2_-_25838722_25838801	1.65123	GGCAGUG	AK137097|Camsap1|227634|calmodulin regulated spectrin-associated protein 1	NM_001115076|Camsap1|227634|calmodulin regulated spectrin-associated protein 1
mm9_v1_chr11_+_59661532_59661635	1.64754	GGCAGUG	BC020084|Nt5m|103850|5',3'-nucleotidase, mitochondrial	NM_134029|Nt5m|103850|5',3'-nucleotidase, mitochondrial	AY061970|Nt5m|103850|5',3'-nucleotidase, mitochondrial
mm9_v1_chr7_-_4947629_4947709	1.64176	GGCAGUG	AK003337|Zfp579|68490|zinc finger protein 579	AK082494|Zfp579|68490|zinc finger protein 579	AK143550|Zfp579|68490|zinc finger protein 579	NM_026741|Zfp579|68490|zinc finger protein 579	AK148159|Zfp579|68490|zinc finger protein 579
mm9_v1_chr1_-_75188496_75188528	1.6359	GGCAGUG	AM085510|Atg9a|245860|autophagy-related 9A (yeast)	BC056488|Atg9a|245860|autophagy-related 9A (yeast)	NM_001003917|Atg9a|245860|autophagy-related 9A (yeast)	BC079884|Atg9a|245860|autophagy-related 9A (yeast)
mm9_v1_chr10_+_74499810_74499858	1.63539	GGCAGUG	AK043946|Rab36|76877|RAB36, member RAS oncogene family	AK018269|Rab36|76877|RAB36, member RAS oncogene family	AK038445|Rab36|76877|RAB36, member RAS oncogene family	AK087892|Rab36|76877|RAB36, member RAS oncogene family	AK163455|Rab36|76877|RAB36, member RAS oncogene family	NM_029781|Rab36|76877|RAB36, member RAS oncogene family	BC119094|Rab36|76877|RAB36, member RAS oncogene family	BC119098|Rab36|76877|RAB36, member RAS oncogene family
mm9_v1_chr1_+_153602492_153602592	1.62683	GGCAGUG	AB188342|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	NM_001039644|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	AK141326|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	AK143252|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC138658|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC138659|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC145357|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC145358|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3
mm9_v1_chr17_+_26852581_26852657	1.61304	GGCAGUG	AK030092|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	NM_029870|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK044760|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK020796|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132423|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132454|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene
mm9_v1_chr6_-_72908018_72908225	1.60596	GGCAGUG	BC089327|Tmsb10|19240|thymosin, beta 10	Z48496|Tmsb10|19240|thymosin, beta 10	NM_001039392|Tmsb10|19240|thymosin, beta 10
mm9_v1_chr9_-_70504934_70505009	1.60111	GGCAGUG	BC058683|Fam63b|235461|family with sequence similarity 63, member B	AK046623|Fam63b|235461|family with sequence similarity 63, member B	BC049357|Fam63b|235461|family with sequence similarity 63, member B	AK046403|Fam63b|235461|family with sequence similarity 63, member B	AK035930|Fam63b|235461|family with sequence similarity 63, member B	NM_172772|Fam63b|235461|family with sequence similarity 63, member B	AK220158|Fam63b|235461|family with sequence similarity 63, member B
mm9_v1_chr7_-_116226796_116226848	1.56979	GGCAGUG	AK053760|Ric3|320360|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)	AK082275|Ric3|320360|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)	AK134663|Ric3|320360|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)	AK149334|Ric3|320360|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)	AK038724|Ric3|320360|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)	AK138641|Ric3|320360|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)	NM_001038624|Ric3|320360|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)	NM_178780|Ric3|320360|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)
mm9_v1_chr1_+_193541845_193542002	1.56604	GGCAGUG	AK133814|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	NM_172266|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1
mm9_v1_chr11_+_77851417_77851587	1.55923	GGCAGUG	AK170557|Flot2|14252|flotillin 2	NM_001040403|Flot2|14252|flotillin 2	NM_008028|Flot2|14252|flotillin 2	AK030199|Flot2|14252|flotillin 2	BC070423|Flot2|14252|flotillin 2	AK004589|Flot2|14252|flotillin 2	AK149530|Flot2|14252|flotillin 2	AK187814|Flot2|14252|flotillin 2	AK213895|Flot2|14252|flotillin 2
mm9_v1_chr6_+_29417738_29417806	1.5546	GGCAGUG	AK152929|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	AK007327|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	NM_025381|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	AK003419|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	AK152153|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	AK152959|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F
mm9_v1_chr1_+_5578546_5578692	1.55004	GGCAGUG	AK039151|Oprk1|18387|opioid receptor, kappa 1	L11065|Oprk1|18387|opioid receptor, kappa 1	NM_011011|Oprk1|18387|opioid receptor, kappa 1	BC116795|Oprk1|18387|opioid receptor, kappa 1	BC119026|Oprk1|18387|opioid receptor, kappa 1	BC144731|Oprk1|18387|opioid receptor, kappa 1	S81111|Oprk1|18387|opioid receptor, kappa 1
mm9_v1_chrX_-_7524828_7525014	1.54816	GGCAGUG	AK148144|Hdac6|15185|histone deacetylase 6	BC041105|Hdac6|15185|histone deacetylase 6	AK148092|Hdac6|15185|histone deacetylase 6	AK154099|Hdac6|15185|histone deacetylase 6	AK155546|Hdac6|15185|histone deacetylase 6	AK155545|Hdac6|15185|histone deacetylase 6	NM_001130416|Hdac6|15185|histone deacetylase 6	NM_010413|Hdac6|15185|histone deacetylase 6
mm9_v1_chr12_-_12948513_12948641	1.54506	GGCAGUG	BC005453|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	AK144126|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	AK146913|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	AK146696|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	NM_008709|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
mm9_v1_chr1_+_193542261_193542399	1.54307	GGCAGUG	NM_001134829|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	AK172914|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	BC013667|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1
mm9_v1_chr18_-_75857207_75857349	1.53241	GGCAGUG	BC058104|Ctif|269037|CBP80/20-dependent translation initiation factor	NM_201354|Ctif|269037|CBP80/20-dependent translation initiation factor
mm9_v1_chr17_-_29052264_29052268	1.52698	GGCAGUG	BC117930|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene	AK033585|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene	NM_172450|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene
mm9_v1_chr3_-_101408495_101408631	1.52658	GGCAGUG	BC033435|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC033471|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC025811|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC021496|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC025627|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC042435|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC025618|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	NM_144900|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK088000|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK137001|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK159279|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK159306|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC023794|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC032187|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide
mm9_v1_chr10_+_93977597_93977699	1.5203	GGCAGUG	NM_172051|Tmcc3|319880|transmembrane and coiled coil domains 3	AK132545|Tmcc3|319880|transmembrane and coiled coil domains 3	BC095951|Tmcc3|319880|transmembrane and coiled coil domains 3	AK083129|Tmcc3|319880|transmembrane and coiled coil domains 3
mm9_v1_chr11_-_88922061_88922089	1.51252	GGCAGUG	AK147841|Dgke|56077|diacylglycerol kinase, epsilon	NM_019505|Dgke|56077|diacylglycerol kinase, epsilon
mm9_v1_chr7_-_126622690_126622768	1.48379	GGCAGUG	AK144065|Umod|22242|uromodulin	AK164688|Umod|22242|uromodulin	L33406|Umod|22242|uromodulin	AK165507|Umod|22242|uromodulin	AK085460|Umod|22242|uromodulin	NM_009470|Umod|22242|uromodulin
mm9_v1_chr2_-_7317824_7317824	1.47987	GGCAGUG	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr10_-_112365976_112366087	1.47377	GGCAGUG	AK014824|Atxn7l3b|382423|ataxin 7-like 3B	BC058561|Atxn7l3b|382423|ataxin 7-like 3B	BC047210|Atxn7l3b|382423|ataxin 7-like 3B	BC079579|Atxn7l3b|382423|ataxin 7-like 3B	BC094390|Atxn7l3b|382423|ataxin 7-like 3B	BC030168|Atxn7l3b|382423|ataxin 7-like 3B	AK003631|Atxn7l3b|382423|ataxin 7-like 3B	AK150316|Atxn7l3b|382423|ataxin 7-like 3B	AK135540|Atxn7l3b|382423|ataxin 7-like 3B	AK011696|Atxn7l3b|382423|ataxin 7-like 3B	AK009409|Atxn7l3b|382423|ataxin 7-like 3B	NM_001033474|Atxn7l3b|382423|ataxin 7-like 3B
mm9_v1_chr1_+_95651481_95651610	1.46579	GGCAGUG	AK010949|Atg4b|66615|autophagy-related 4B (yeast)	AK088811|Atg4b|66615|autophagy-related 4B (yeast)	BC027184|Atg4b|66615|autophagy-related 4B (yeast)	AK028712|Atg4b|66615|autophagy-related 4B (yeast)	AK075796|Atg4b|66615|autophagy-related 4B (yeast)	AK031570|Atg4b|66615|autophagy-related 4B (yeast)	AK144239|Atg4b|66615|autophagy-related 4B (yeast)	NM_174874|Atg4b|66615|autophagy-related 4B (yeast)
mm9_v1_chr7_+_17323737_17323870	1.44121	GGCAGUG	AK146584|Ap2s1|232910|adaptor-related protein complex 2, sigma 1 subunit	NM_198613|Ap2s1|232910|adaptor-related protein complex 2, sigma 1 subunit	BC052499|Ap2s1|232910|adaptor-related protein complex 2, sigma 1 subunit
mm9_v1_chr2_-_37278415_37278506	1.42045	GGCAGUG	BC117951|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	BC117952|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	AK053071|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	NM_001100591|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2
mm9_v1_chr19_-_40588219_40588234	1.41641	GGCAGUG	AK087553|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_178362|Sorbs1|20411|sorbin and SH3 domain containing 1	BC012703|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr5_-_116181560_116181567	1.41341	GGCAGUG	BC024804|Ccdc64|75665|coiled-coil domain containing 64	BC126948|Ccdc64|75665|coiled-coil domain containing 64	GU973876|Ccdc64|75665|coiled-coil domain containing 64	NM_001080808|Ccdc64|75665|coiled-coil domain containing 64
mm9_v1_chr1_+_43155550_43155613	1.40833	GGCAGUG	BC006931|AI597479|98404|expressed sequence AI597479	NM_133818|AI597479|98404|expressed sequence AI597479	AK081372|AI597479|98404|expressed sequence AI597479
mm9_v1_chr6_-_90760116_90760132	1.40771	GGCAGUG	NM_001134384|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chrX_+_71574403_71574439	1.38955	GGCAGUG	NM_008883|Plxna3|18846|plexin A3	BC093482|Plxna3|18846|plexin A3	D86950|Plxna3|18846|plexin A3
mm9_v1_chr11_+_55017825_55017912	1.35458	GGCAGUG	NM_153139|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	AY211262|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	BC138556|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	BC138558|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1
mm9_v1_chr16_-_16359122_16359124	1.35123	GGCAGUG	NM_001025947|Dnm1l|74006|dynamin 1-like	NM_152816|Dnm1l|74006|dynamin 1-like
mm9_v1_chrX_-_133527570_133527593	1.33925	GGCAGUG	NM_001114179|Mcart6|67062|mitochondrial carrier triple repeat 6
mm9_v1_chr5_-_23857421_23857489	1.33711	GGCAGUG	AF012868|Kcnh2|16511|potassium voltage-gated channel, subfamily H (eag-related), member 2	NM_013569|Kcnh2|16511|potassium voltage-gated channel, subfamily H (eag-related), member 2
mm9_v1_chr6_-_94650118_94650173	1.33624	GGCAGUG	D78572|Lrig1|16206|leucine-rich repeats and immunoglobulin-like domains 1	NM_008377|Lrig1|16206|leucine-rich repeats and immunoglobulin-like domains 1
mm9_v1_chr5_-_136410488_136410547	1.30479	GGCAGUG	NM_018871|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr7_-_126864266_126864324	1.27215	GGCAGUG	BC004776|Thumpd1|233802|THUMP domain containing 1	NM_145585|Thumpd1|233802|THUMP domain containing 1	AK084107|Thumpd1|233802|THUMP domain containing 1	AK152912|Thumpd1|233802|THUMP domain containing 1	AK032078|Thumpd1|233802|THUMP domain containing 1
mm9_v1_chr11_-_97490978_97491083	1.26613	GGCAGUG	AK087411|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene	BC055770|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene	NM_175332|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene
mm9_v1_chr9_-_44248950_44248950	1.24325	GGCAGUG	AK139562|Foxr1|382074|forkhead box R1	NM_001033469|Foxr1|382074|forkhead box R1
mm9_v1_chr3_-_94910762_94910779	1.24319	GGCAGUG	BC031774|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	NM_008847|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm9_v1_chr19_-_40588297_40588344	1.23807	GGCAGUG	NM_009166|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr19_-_19185685_19185685	1.23352	GGCAGUG	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr9_-_14419410_14419443	1.22192	GGCAGUG	NM_001081395|Amotl1|75723|angiomotin-like 1
mm9_v1_chr9_-_101154160_101154163	1.21428	GGCAGUG	NM_001161362|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha
mm9_v1_chr14_-_100548982_100549014	1.19904	GGCAGUG	AB221575|Klf12|16597|Kruppel-like factor 12	Y14295|Klf12|16597|Kruppel-like factor 12	BC067408|Klf12|16597|Kruppel-like factor 12	NM_010636|Klf12|16597|Kruppel-like factor 12
mm9_v1_chr12_-_86611513_86611563	1.19197	GGCAGUG	BC079861|Mlh3|217716|mutL homolog 3 (E coli)	NM_175337|Mlh3|217716|mutL homolog 3 (E coli)	BC072599|Mlh3|217716|mutL homolog 3 (E coli)	AK132195|Mlh3|217716|mutL homolog 3 (E coli)	AK035887|Mlh3|217716|mutL homolog 3 (E coli)
mm9_v1_chr5_-_144031666_144031702	1.1904	GGCAGUG	NM_017467|Zfp316|54201|zinc finger protein 316
mm9_v1_chr7_-_52125157_52125184	1.18383	GGCAGUG	BC024632|Ptov1|84113|prostate tumor over expressed gene 1	NM_133949|Ptov1|84113|prostate tumor over expressed gene 1
mm9_v1_chr19_-_37281762_37281782	1.15913	GGCAGUG	BC128377|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	AY313774|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	NM_198300|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3
mm9_v1_chr19_+_5023859_5024113	1.1244	GGCAGUG	BC048958|Slc29a2|13340|solute carrier family 29 (nucleoside transporters), member 2	NM_007854|Slc29a2|13340|solute carrier family 29 (nucleoside transporters), member 2	AK010950|Slc29a2|13340|solute carrier family 29 (nucleoside transporters), member 2	AK154310|Slc29a2|13340|solute carrier family 29 (nucleoside transporters), member 2	AF183397|Slc29a2|13340|solute carrier family 29 (nucleoside transporters), member 2	AK083484|Slc29a2|13340|solute carrier family 29 (nucleoside transporters), member 2	AK144451|Slc29a2|13340|solute carrier family 29 (nucleoside transporters), member 2
mm9_v1_chr6_+_86354212_86354404	1.12017	GGCAGUG	NM_001164078|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	NM_001164079|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	NM_011585|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	AK144222|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	AK088486|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC023813|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC046812|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC027826|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	U55862|Tia1|21841|cytotoxic granule-associated RNA binding protein 1
mm9_v1_chr7_-_133839152_133839297	1.11767	GGCAGUG	AK014753|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	BC145468|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	BC145688|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK053901|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	BC055909|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK010828|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK049139|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	NM_029420|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK010748|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)
mm9_v1_chr19_-_9162377_9162448	1.1084	GGCAGUG	BC027518|Scgb1a1|22287|secretoglobin, family 1A, member 1 (uteroglobin)	AK145844|Scgb1a1|22287|secretoglobin, family 1A, member 1 (uteroglobin)	NM_011681|Scgb1a1|22287|secretoglobin, family 1A, member 1 (uteroglobin)
mm9_v1_chr14_-_56377260_56377270	1.10816	GGCAGUG	NM_009894|Cideb|12684|cell death-inducing DNA fragmentation factor, alpha subunit-like effector B
mm9_v1_chr5_-_34125322_34125413	1.09679	GGCAGUG	BC023862|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AF061026|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC061690|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	NM_019694|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC046326|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC055865|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AB041582|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC061115|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AK133849|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1
mm9_v1_chr3_+_103379203_103379300	1.09437	GGCAGUG	NM_018800|Syt6|54524|synaptotagmin VI	BC050760|Syt6|54524|synaptotagmin VI	AB026803|Syt6|54524|synaptotagmin VI	AB026809|Syt6|54524|synaptotagmin VI	AB026810|Syt6|54524|synaptotagmin VI
mm9_v1_chr2_+_109532592_109532697	1.08518	GGCAGUG	AY057913|Bdnf|12064|brain derived neurotrophic factor	EF125673|Bdnf|12064|brain derived neurotrophic factor	NM_001048141|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr7_-_116313821_116313821	1.06371	GGCAGUG	BC053074|Lmo1|109594|LIM domain only 1	NM_057173|Lmo1|109594|LIM domain only 1
mm9_v1_chr13_+_94541584_94541713	1.06131	GGCAGUG	AK140163|Arsb|11881|arylsulfatase B	AK158312|Arsb|11881|arylsulfatase B	NM_009712|Arsb|11881|arylsulfatase B	AK083309|Arsb|11881|arylsulfatase B	BC150661|Arsb|11881|arylsulfatase B	AK154098|Arsb|11881|arylsulfatase B
mm9_v1_chr2_-_38920925_38921012	1.05755	GGCAGUG	BC043090|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	NM_029793|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK028516|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	BC024637|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	BC053068|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK002954|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK008972|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK044987|Golga1|76899|golgi autoantigen, golgin subfamily a, 1
mm9_v1_chr12_+_86814822_86814862	1.03599	GGCAGUG	AK154418|Fos|14281|FBJ osteosarcoma oncogene	BC029814|Fos|14281|FBJ osteosarcoma oncogene	NM_010234|Fos|14281|FBJ osteosarcoma oncogene
mm9_v1_chr19_-_5688877_5688907	1.03408	GGCAGUG	BC055289|Pcnxl3|104401|pecanex-like 3 (Drosophila)	BC096538|Pcnxl3|104401|pecanex-like 3 (Drosophila)	NM_144868|Pcnxl3|104401|pecanex-like 3 (Drosophila)
mm9_v1_chr2_-_130665832_130665882	1.03073	GGCAGUG	BC052447|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	NM_029432|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK015050|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK158367|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK089462|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK143611|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK045996|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene
mm9_v1_chr11_+_119352933_119353046	1.01101	GGCAGUG	NM_177394|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene	AK170595|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene	AK172181|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene	BC056486|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene	AK042626|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene
mm9_v1_chr8_+_112089791_112089904	0.998891	GGCAGUG	AK079533|Txnl4b|234723|thioredoxin-like 4B	NM_175646|Txnl4b|234723|thioredoxin-like 4B	AK085226|Txnl4b|234723|thioredoxin-like 4B
mm9_v1_chr6_-_91361356_91361402	0.995469	GGCAGUG	BC049093|Wnt7a|22421|wingless-related MMTV integration site 7A	BC057586|Wnt7a|22421|wingless-related MMTV integration site 7A	AK004683|Wnt7a|22421|wingless-related MMTV integration site 7A	NM_009527|Wnt7a|22421|wingless-related MMTV integration site 7A
mm9_v1_chr17_-_45823145_45823192	0.985484	GGCAGUG	NM_198167|Tmem63b|224807|transmembrane protein 63b	AK159673|Tmem63b|224807|transmembrane protein 63b
mm9_v1_chr1_+_182656137_182656231	0.965712	GGCAGUG	AF022770|Acbd3|170760|acyl-Coenzyme A binding domain containing 3	AK030371|Acbd3|170760|acyl-Coenzyme A binding domain containing 3	NM_133225|Acbd3|170760|acyl-Coenzyme A binding domain containing 3	AK167272|Acbd3|170760|acyl-Coenzyme A binding domain containing 3	AK168799|Acbd3|170760|acyl-Coenzyme A binding domain containing 3	BC050121|Acbd3|170760|acyl-Coenzyme A binding domain containing 3	BC060602|Acbd3|170760|acyl-Coenzyme A binding domain containing 3
mm9_v1_chr7_+_121862156_121862165	0.953834	GGCAGUG	BC111865|Calcb|116903|calcitonin-related polypeptide, beta	NM_054084|Calcb|116903|calcitonin-related polypeptide, beta	AK136518|Calcb|116903|calcitonin-related polypeptide, beta
mm9_v1_chr19_+_6047024_6047144	0.940979	GGCAGUG	BC080722|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	AK143720|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	AK172097|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	BC042199|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	AK004688|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	BC046829|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	NM_001164709|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin
mm9_v1_chr15_-_31297286_31297513	0.927068	GGCAGUG	AK089667|Ankrd33b|67434|ankyrin repeat domain 33B	AK170894|Ankrd33b|67434|ankyrin repeat domain 33B	AK017844|Ankrd33b|67434|ankyrin repeat domain 33B	AK002572|Ankrd33b|67434|ankyrin repeat domain 33B	AK012871|Ankrd33b|67434|ankyrin repeat domain 33B	AK156757|Ankrd33b|67434|ankyrin repeat domain 33B	BC100327|Ankrd33b|67434|ankyrin repeat domain 33B	NM_001164441|Ankrd33b|67434|ankyrin repeat domain 33B	NM_026153|Ankrd33b|67434|ankyrin repeat domain 33B	NM_027496|Ankrd33b|67434|ankyrin repeat domain 33B
mm9_v1_chr16_+_13780778_13780842	0.926273	GGCAGUG	NM_001039521|Rrn3|106298|RRN3 RNA polymerase I transcription factor homolog (yeast)	AK021410|Rrn3|106298|RRN3 RNA polymerase I transcription factor homolog (yeast)	AK165676|Rrn3|106298|RRN3 RNA polymerase I transcription factor homolog (yeast)	AK080680|Rrn3|106298|RRN3 RNA polymerase I transcription factor homolog (yeast)	BC138774|Rrn3|106298|RRN3 RNA polymerase I transcription factor homolog (yeast)	BC138776|Rrn3|106298|RRN3 RNA polymerase I transcription factor homolog (yeast)	AK080397|Rrn3|106298|RRN3 RNA polymerase I transcription factor homolog (yeast)
mm9_v1_chr16_-_3872273_3872373	0.909761	GGCAGUG	AK016727|Zfp597|71063|zinc finger protein 597	NM_001033159|Zfp597|71063|zinc finger protein 597
mm9_v1_chr14_+_69808694_69808750	0.904762	GGCAGUG	BC132401|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)	BC132427|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)	AK137281|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)	NM_010921|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)	U88542|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)	BC050109|Nkx3-1|18095|NK-3 transcription factor, locus 1 (Drosophila)
mm9_v1_chr2_-_30997508_30997548	0.901588	GGCAGUG	AK157135|Fnbp1|14269|formin binding protein 1	AK122308|Fnbp1|14269|formin binding protein 1	NM_001038700|Fnbp1|14269|formin binding protein 1	NM_001177648|Fnbp1|14269|formin binding protein 1	NM_001177649|Fnbp1|14269|formin binding protein 1	NM_019406|Fnbp1|14269|formin binding protein 1
mm9_v1_chr4_+_151470827_151470883	0.896707	GGCAGUG	AY605057|Plekhg5|269608|pleckstrin homology domain containing, family G (with RhoGef domain) member 5	AY605058|Plekhg5|269608|pleckstrin homology domain containing, family G (with RhoGef domain) member 5	NM_001004156|Plekhg5|269608|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
mm9_v1_chr2_+_52716901_52716906	0.878679	GGCAGUG	NM_172409|Fmnl2|71409|formin-like 2
mm9_v1_chr16_+_4886183_4886360	0.874839	GGCAGUG	NM_029657|Mgrn1|17237|mahogunin, ring finger 1	BC046830|Mgrn1|17237|mahogunin, ring finger 1	AK150176|Mgrn1|17237|mahogunin, ring finger 1	AK153407|Mgrn1|17237|mahogunin, ring finger 1	AK011747|Mgrn1|17237|mahogunin, ring finger 1	AK088533|Mgrn1|17237|mahogunin, ring finger 1	AK182412|Mgrn1|17237|mahogunin, ring finger 1
mm9_v1_chr2_+_180234680_180234753	0.872617	GGCAGUG	AB017027|Ntsr1|18216|neurotensin receptor 1	NM_018766|Ntsr1|18216|neurotensin receptor 1	BC087730|Ntsr1|18216|neurotensin receptor 1
mm9_v1_chr1_-_194677940_194677940	0.867645	GGCAGUG	NM_001177794|Sertad4|214791|SERTA domain containing 4
mm9_v1_chr1_+_93437120_93437389	0.864291	GGCAGUG	AK153774|Asb1|65247|ankyrin repeat and SOCS box-containing 1	NM_001039126|Asb1|65247|ankyrin repeat and SOCS box-containing 1	BC034869|Asb1|65247|ankyrin repeat and SOCS box-containing 1	AK122456|Asb1|65247|ankyrin repeat and SOCS box-containing 1	AF155352|Asb1|65247|ankyrin repeat and SOCS box-containing 1
mm9_v1_chr19_+_53384990_53385011	0.86061	GGCAGUG	NM_001008542|Mxi1|17859|Max interacting protein 1	AK154538|Mxi1|17859|Max interacting protein 1	BC064453|Mxi1|17859|Max interacting protein 1
mm9_v1_chr3_+_108087046_108087050	0.852856	GGCAGUG	BC056343|Sort1|20661|sortilin 1	NM_019972|Sort1|20661|sortilin 1
mm9_v1_chr9_+_20456531_20456579	0.852173	GGCAGUG	AK002665|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	AB009691|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	AK003931|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	AK160228|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	AK003369|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	AK054045|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	AK150652|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	NM_023371|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	AK139395|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	BC038254|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
mm9_v1_chrX_+_138662725_138662809	0.848423	GGCAGUG	NM_172782|Nxt2|237082|nuclear transport factor 2-like export factor 2	AK144349|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC064727|Nxt2|237082|nuclear transport factor 2-like export factor 2	AK032102|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC068166|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC118503|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC094570|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chr6_+_146673451_146673548	0.843081	GGCAGUG	NM_172734|Stk38l|232533|serine/threonine kinase 38 like	AK052288|Stk38l|232533|serine/threonine kinase 38 like	AK045971|Stk38l|232533|serine/threonine kinase 38 like	AY223819|Stk38l|232533|serine/threonine kinase 38 like
mm9_v1_chr7_-_125386862_125387193	0.842199	GGCAGUG	AK220328|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	AK041264|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	AK047829|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	AK157798|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	AK049391|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	NM_001031814|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
mm9_v1_chr15_-_97976073_97976140	0.834518	GGCAGUG	AK030168|Asb8|78541|ankyrin repeat and SOCS box-containing 8	AK087299|Asb8|78541|ankyrin repeat and SOCS box-containing 8	NM_001170710|Asb8|78541|ankyrin repeat and SOCS box-containing 8	NM_030121|Asb8|78541|ankyrin repeat and SOCS box-containing 8
mm9_v1_chr11_+_78075242_78075302	0.832016	GGCAGUG	AK150829|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	NM_001002004|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC080706|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	AK149719|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC075633|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC019798|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene
mm9_v1_chr1_-_65003291_65003407	0.8266	GGCAGUG	AK034959|Plekhm3|241075|pleckstrin homology domain containing, family M, member 3	BC063098|Plekhm3|241075|pleckstrin homology domain containing, family M, member 3	NM_001039493|Plekhm3|241075|pleckstrin homology domain containing, family M, member 3
mm9_v1_chr7_-_26504053_26504077	0.820696	GGCAGUG	AK155466|Ccdc97|52132|coiled-coil domain containing 97	AK045509|Ccdc97|52132|coiled-coil domain containing 97	AK088221|Ccdc97|52132|coiled-coil domain containing 97	AK004762|Ccdc97|52132|coiled-coil domain containing 97	NM_028771|Ccdc97|52132|coiled-coil domain containing 97
mm9_v1_chr2_+_109514856_109514856	0.815281	GGCAGUG	AY057908|Bdnf|12064|brain derived neurotrophic factor	EF125669|Bdnf|12064|brain derived neurotrophic factor	NM_007540|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr2_-_7317513_7317626	0.810394	GGCAGUG	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr6_+_108733041_108733073	0.808533	GGCAGUG	NM_026011|Arl8b|67166|ADP-ribosylation factor-like 8B	AK030689|Arl8b|67166|ADP-ribosylation factor-like 8B
mm9_v1_chr5_-_135028197_135028344	0.805476	GGCAGUG	BC039162|Clip2|269713|CAP-GLY domain containing linker protein 2	BC053048|Clip2|269713|CAP-GLY domain containing linker protein 2	NM_001039162|Clip2|269713|CAP-GLY domain containing linker protein 2	NM_009990|Clip2|269713|CAP-GLY domain containing linker protein 2
mm9_v1_chr16_-_28929698_28929810	0.777443	GGCAGUG	BC085092|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	BC068245|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	NM_177718|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene
mm9_v1_chr13_-_117099629_117099895	0.77592	GGCAGUG	AB104633|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AJ132765|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132609|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK044406|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK090263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK143052|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	NM_021459|Isl1|16392|ISL1 transcription factor, LIM/homeodomain
mm9_v1_chr19_-_57193391_57193513	0.770493	GGCAGUG	AK078723|Ablim1|226251|actin-binding LIM protein 1	AK165766|Ablim1|226251|actin-binding LIM protein 1	AK172605|Ablim1|226251|actin-binding LIM protein 1	AF404776|Ablim1|226251|actin-binding LIM protein 1	NM_001103178|Ablim1|226251|actin-binding LIM protein 1	AK008893|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr19_+_53403902_53404133	0.757729	GGCAGUG	NM_010847|Mxi1|17859|Max interacting protein 1	AK144219|Mxi1|17859|Max interacting protein 1	AK017637|Mxi1|17859|Max interacting protein 1	AK140465|Mxi1|17859|Max interacting protein 1	L38822|Mxi1|17859|Max interacting protein 1	U24674|Mxi1|17859|Max interacting protein 1
mm9_v1_chr11_-_96838940_96839063	0.756985	GGCAGUG	GU126673|Sp2|78912|Sp2 transcription factor	AK139302|Sp2|78912|Sp2 transcription factor	BC086457|Sp2|78912|Sp2 transcription factor	BC021759|Sp2|78912|Sp2 transcription factor	AK078246|Sp2|78912|Sp2 transcription factor	AK156580|Sp2|78912|Sp2 transcription factor	NM_001080964|Sp2|78912|Sp2 transcription factor	NM_030220|Sp2|78912|Sp2 transcription factor
mm9_v1_chr17_-_26078825_26078928	0.756471	GGCAGUG	AK155173|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK016852|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK137390|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK033349|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK170431|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AB008895|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	BC014287|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	NM_011822|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK163680|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK169284|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q
mm9_v1_chr7_-_54856741_54856741	0.753734	GGCAGUG	AY042193|Mrgpra3|233222|MAS-related GPR, member A3	NM_153067|Mrgpra3|233222|MAS-related GPR, member A3
mm9_v1_chr3_-_104315778_104315782	0.747955	GGCAGUG	AK036116|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2	NM_001025067|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chr19_+_45063750_45063833	0.74589	GGCAGUG	AK039355|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	BC054532|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	AK173219|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	AF134918|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	NM_011976|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm9_v1_chr1_+_75518103_75518162	0.744982	GGCAGUG	NM_027886|Stk11ip|71728|serine/threonine kinase 11 interacting protein	AK165911|Stk11ip|71728|serine/threonine kinase 11 interacting protein	BC061635|Stk11ip|71728|serine/threonine kinase 11 interacting protein	AK156122|Stk11ip|71728|serine/threonine kinase 11 interacting protein	AK004757|Stk11ip|71728|serine/threonine kinase 11 interacting protein
mm9_v1_chr4_+_101092307_101092393	0.738873	GGCAGUG	NM_009647|Ak4|11639|adenylate kinase 4	AK144439|Ak4|11639|adenylate kinase 4	BC086791|Ak4|11639|adenylate kinase 4	D85036|Ak4|11639|adenylate kinase 4	AB020239|Ak4|11639|adenylate kinase 4	BC086663|Ak4|11639|adenylate kinase 4	AK166975|Ak4|11639|adenylate kinase 4
mm9_v1_chr3_-_108365340_108365435	0.731189	GGCAGUG	NM_026198|Tmem167b|67495|transmembrane protein 167B
mm9_v1_chr17_-_57074707_57074921	0.730671	GGCAGUG	AF312858|Mllt1|64144|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1	BC053005|Mllt1|64144|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1	NM_022328|Mllt1|64144|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1	AK156820|Mllt1|64144|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1	AK144605|Mllt1|64144|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1
mm9_v1_chr4_+_101091913_101091947	0.718211	GGCAGUG	NM_001177605|Ak4|11639|adenylate kinase 4	AK154374|Ak4|11639|adenylate kinase 4	NM_001177604|Ak4|11639|adenylate kinase 4
mm9_v1_chr5_-_76733540_76733585	0.683998	GGCAGUG	AF000998|Clock|12753|circadian locomotor output cycles kaput	NM_007715|Clock|12753|circadian locomotor output cycles kaput
mm9_v1_chr11_+_119352660_119352688	0.676183	GGCAGUG	AK084233|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene	NM_001164636|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene	AK084548|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene
mm9_v1_chr4_-_131394135_131394216	0.66494	GGCAGUG	BC080736|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	BC048694|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	AK052720|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	D88187|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	AK148515|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	NM_001083119|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	NM_011214|Ptpru|19273|protein tyrosine phosphatase, receptor type, U
mm9_v1_chr2_-_120996813_120996890	0.657847	GGCAGUG	AK031943|Zscan29|99334|zinc finger SCAN domains 29	AK050477|Zscan29|99334|zinc finger SCAN domains 29	NM_178889|Zscan29|99334|zinc finger SCAN domains 29
mm9_v1_chr19_-_19075535_19075606	0.655739	GGCAGUG	DQ779924|Rorb|225998|RAR-related orphan receptor beta	BC024768|Rorb|225998|RAR-related orphan receptor beta	AK044421|Rorb|225998|RAR-related orphan receptor beta	BC024842|Rorb|225998|RAR-related orphan receptor beta	NM_146095|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr11_-_98190774_98191090	0.648106	GGCAGUG	D83507|Neurod2|18013|neurogenic differentiation 2	BC058965|Neurod2|18013|neurogenic differentiation 2	NM_010895|Neurod2|18013|neurogenic differentiation 2	U58471|Neurod2|18013|neurogenic differentiation 2	AK158767|Neurod2|18013|neurogenic differentiation 2
mm9_v1_chr14_+_48092235_48092236	0.633178	GGCAGUG	AK020018|Fbxo34|78938|F-box protein 34	NM_001146085|Fbxo34|78938|F-box protein 34	NM_001146086|Fbxo34|78938|F-box protein 34	NM_030236|Fbxo34|78938|F-box protein 34
mm9_v1_chr19_-_10599581_10599698	0.6308	GGCAGUG	BC048913|Sdhaf2|66072|succinate dehydrogenase complex assembly factor 2	BC038924|Sdhaf2|66072|succinate dehydrogenase complex assembly factor 2	BC085277|Sdhaf2|66072|succinate dehydrogenase complex assembly factor 2	AK013454|Sdhaf2|66072|succinate dehydrogenase complex assembly factor 2	AK075594|Sdhaf2|66072|succinate dehydrogenase complex assembly factor 2	AK160957|Sdhaf2|66072|succinate dehydrogenase complex assembly factor 2	AK167228|Sdhaf2|66072|succinate dehydrogenase complex assembly factor 2	BC058955|Sdhaf2|66072|succinate dehydrogenase complex assembly factor 2	BC060090|Sdhaf2|66072|succinate dehydrogenase complex assembly factor 2	NM_025333|Sdhaf2|66072|succinate dehydrogenase complex assembly factor 2
mm9_v1_chr7_-_30290470_30290595	0.6257	GGCAGUG	AK171182|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3	AK154121|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3	NM_001081028|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3
mm9_v1_chr4_+_6118247_6118251	0.611432	GGCAGUG	AK028268|Ubxn2b|68053|UBX domain protein 2B	AK018273|Ubxn2b|68053|UBX domain protein 2B	AK032332|Ubxn2b|68053|UBX domain protein 2B	BC076632|Ubxn2b|68053|UBX domain protein 2B	NM_026534|Ubxn2b|68053|UBX domain protein 2B
mm9_v1_chr9_+_37335673_37335728	0.610819	GGCAGUG	NM_027102|Esam|69524|endothelial cell-specific adhesion molecule	AK156399|Esam|69524|endothelial cell-specific adhesion molecule	BC019460|Esam|69524|endothelial cell-specific adhesion molecule	BC049249|Esam|69524|endothelial cell-specific adhesion molecule	AK009223|Esam|69524|endothelial cell-specific adhesion molecule	AF361882|Esam|69524|endothelial cell-specific adhesion molecule
mm9_v1_chr8_-_42219037_42219129	0.605654	GGCAGUG	AK040710|Mtus1|102103|mitochondrial tumor suppressor 1	AK143781|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005863|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr17_+_21145866_21145967	0.596977	GGCAGUG	AK161712|Zfp160|224585|zinc finger protein 160	AK162583|Zfp160|224585|zinc finger protein 160	AK143313|Zfp160|224585|zinc finger protein 160	NM_145483|Zfp160|224585|zinc finger protein 160	BC015291|Zfp160|224585|zinc finger protein 160
mm9_v1_chr7_-_149361909_149361909	0.594632	GGCAGUG	AK014785|Krtap5-2|71623|keratin associated protein 5-2	NM_027844|Krtap5-2|71623|keratin associated protein 5-2
mm9_v1_chr18_+_22503589_22503589	0.590016	GGCAGUG	AK082659|Asxl3|211961|additional sex combs like 3 (Drosophila)	NM_001167777|Asxl3|211961|additional sex combs like 3 (Drosophila)
mm9_v1_chr5_+_122608248_122608342	0.582972	GGCAGUG	AK147131|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	NM_013636|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	BC021646|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK152422|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK169336|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform
mm9_v1_chr5_+_100947327_100947442	0.568283	GGCAGUG	NM_012001|Cops4|26891|COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana)	AK167833|Cops4|26891|COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana)
mm9_v1_chr17_-_46162111_46162111	0.553252	GGCAGUG	NM_001110266|Vegfa|22339|vascular endothelial growth factor A	NM_001110267|Vegfa|22339|vascular endothelial growth factor A	NM_001110268|Vegfa|22339|vascular endothelial growth factor A
mm9_v1_chr2_+_157193317_157193359	0.544797	GGCAGUG	NM_026968|Manbal|69161|mannosidase, beta A, lysosomal-like	AK079707|Manbal|69161|mannosidase, beta A, lysosomal-like	AK169993|Manbal|69161|mannosidase, beta A, lysosomal-like	AK007599|Manbal|69161|mannosidase, beta A, lysosomal-like	BC013803|Manbal|69161|mannosidase, beta A, lysosomal-like	BC030375|Manbal|69161|mannosidase, beta A, lysosomal-like
mm9_v1_chr9_-_110379093_110379197	0.541794	GGCAGUG	BC065167|Klhl18|270201|kelch-like 18 (Drosophila)	BC025563|Klhl18|270201|kelch-like 18 (Drosophila)	AK173029|Klhl18|270201|kelch-like 18 (Drosophila)	NM_177771|Klhl18|270201|kelch-like 18 (Drosophila)
mm9_v1_chr12_-_47919695_47919761	0.536934	GGCAGUG	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr14_+_58691522_58691522	0.53654	GGCAGUG	AK158782|Fgf9|14180|fibroblast growth factor 9	NM_013518|Fgf9|14180|fibroblast growth factor 9
mm9_v1_chr14_-_76510534_76510637	0.535734	GGCAGUG	AK173238|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	BC029731|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	AK004707|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	AK082912|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	NM_026177|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	AK016681|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene
mm9_v1_chr3_+_89635281_89635319	0.529919	GGCAGUG	AK034662|She|214547|src homology 2 domain-containing transforming protein E	AK157580|She|214547|src homology 2 domain-containing transforming protein E	NM_172530|She|214547|src homology 2 domain-containing transforming protein E	BC109362|She|214547|src homology 2 domain-containing transforming protein E	BC109363|She|214547|src homology 2 domain-containing transforming protein E
mm9_v1_chr8_-_122099088_122099101	0.520243	GGCAGUG	NM_175185|Hsdl1|72552|hydroxysteroid dehydrogenase like 1
mm9_v1_chr10_+_127848671_127848731	0.518239	GGCAGUG	AK045760|Rnf41|67588|ring finger protein 41	NM_001164237|Rnf41|67588|ring finger protein 41	NM_026259|Rnf41|67588|ring finger protein 41	AK030558|Rnf41|67588|ring finger protein 41	BC049078|Rnf41|67588|ring finger protein 41	AF305730|Rnf41|67588|ring finger protein 41
mm9_v1_chr18_+_54021746_54021814	0.516875	GGCAGUG	AK049379|Csnk1g3|70425|casein kinase 1, gamma 3	NM_152809|Csnk1g3|70425|casein kinase 1, gamma 3	AK080491|Csnk1g3|70425|casein kinase 1, gamma 3
mm9_v1_chrX_-_133572810_133572840	0.511755	GGCAGUG	AK013345|Mcart6|67062|mitochondrial carrier triple repeat 6	AK028496|Mcart6|67062|mitochondrial carrier triple repeat 6	AK076279|Mcart6|67062|mitochondrial carrier triple repeat 6	AK009846|Mcart6|67062|mitochondrial carrier triple repeat 6	AK012963|Mcart6|67062|mitochondrial carrier triple repeat 6	NM_001082412|Mcart6|67062|mitochondrial carrier triple repeat 6
mm9_v1_chr12_-_81537525_81537603	0.510516	GGCAGUG	BC046813|Dcaf5|320808|DDB1 and CUL4 associated factor 5	AK165096|Dcaf5|320808|DDB1 and CUL4 associated factor 5	AK137579|Dcaf5|320808|DDB1 and CUL4 associated factor 5	NM_177267|Dcaf5|320808|DDB1 and CUL4 associated factor 5
mm9_v1_chr2_-_31701432_31701524	0.508091	GGCAGUG	AK046338|Fibcd1|98970|fibrinogen C domain containing 1	AK084379|Fibcd1|98970|fibrinogen C domain containing 1	BC060634|Fibcd1|98970|fibrinogen C domain containing 1	NM_178887|Fibcd1|98970|fibrinogen C domain containing 1
mm9_v1_chr6_-_3714466_3714712	0.506718	GGCAGUG	AK162391|Calcr|12311|calcitonin receptor	U18542|Calcr|12311|calcitonin receptor	AK039161|Calcr|12311|calcitonin receptor	AK138275|Calcr|12311|calcitonin receptor	NM_007588|Calcr|12311|calcitonin receptor
mm9_v1_chr11_-_118151298_118151557	0.504528	GGCAGUG	AK129363|Usp36|72344|ubiquitin specific peptidase 36	AK079342|Usp36|72344|ubiquitin specific peptidase 36	AK165635|Usp36|72344|ubiquitin specific peptidase 36	AK049205|Usp36|72344|ubiquitin specific peptidase 36	AK028572|Usp36|72344|ubiquitin specific peptidase 36	NM_001033528|Usp36|72344|ubiquitin specific peptidase 36
mm9_v1_chr4_-_129250806_129250884	0.502818	GGCAGUG	M23192|Lck|16818|lymphocyte protein tyrosine kinase	BC011474|Lck|16818|lymphocyte protein tyrosine kinase	NM_001162433|Lck|16818|lymphocyte protein tyrosine kinase
mm9_v1_chr15_-_97996008_97996055	0.499602	GGCAGUG	NM_001170711|Asb8|78541|ankyrin repeat and SOCS box-containing 8	AK016001|Asb8|78541|ankyrin repeat and SOCS box-containing 8
mm9_v1_chr5_+_134575561_134575653	0.495651	GGCAGUG	AJ296173|Gatsl2|80909|GATS protein-like 2	AK039122|Gatsl2|80909|GATS protein-like 2	BC094613|Gatsl2|80909|GATS protein-like 2	NM_030719|Gatsl2|80909|GATS protein-like 2	AK052217|Gatsl2|80909|GATS protein-like 2
mm9_v1_chr5_+_138526303_138526341	0.493756	GGCAGUG	NM_029869|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	NM_133906|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK036807|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK031759|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020355|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK154831|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020039|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK054323|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1
mm9_v1_chr1_-_168339909_168339980	0.493025	GGCAGUG	AK031716|Pogk|71592|pogo transposable element with KRAB domain	BC072587|Pogk|71592|pogo transposable element with KRAB domain	AK048067|Pogk|71592|pogo transposable element with KRAB domain	AK048752|Pogk|71592|pogo transposable element with KRAB domain	AK053898|Pogk|71592|pogo transposable element with KRAB domain	NM_001142948|Pogk|71592|pogo transposable element with KRAB domain	NM_175170|Pogk|71592|pogo transposable element with KRAB domain
mm9_v1_chr6_+_121133684_121133684	0.485127	GGCAGUG	AK087637|Pex26|74043|peroxisomal biogenesis factor 26	NM_028730|Pex26|74043|peroxisomal biogenesis factor 26
mm9_v1_chr11_+_68829412_68829631	0.478609	GGCAGUG	NM_001013256|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	NM_001143790|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	BC072625|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	BC066078|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK145919|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK165906|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	BC147495|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	BC147497|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK044055|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK030876|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK038651|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene
mm9_v1_chr11_-_63892874_63892978	0.464211	GGCAGUG	AK213695|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	BC038046|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	BC018301|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK149999|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK171661|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK010385|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK154668|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK156865|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK172718|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	NM_178379|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)
mm9_v1_chr7_-_35015309_35015367	0.461235	GGCAGUG	AK147124|Gpi1|14751|glucose phosphate isomerase 1	NM_008155|Gpi1|14751|glucose phosphate isomerase 1
mm9_v1_chr11_+_75401554_75401692	0.458586	GGCAGUG	AK144618|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152089|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK153569|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK167760|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152874|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK165659|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168720|Pitpna|18738|phosphatidylinositol transfer protein, alpha	U96725|Pitpna|18738|phosphatidylinositol transfer protein, alpha	NM_008850|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK149745|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK151496|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168187|Pitpna|18738|phosphatidylinositol transfer protein, alpha	BC056171|Pitpna|18738|phosphatidylinositol transfer protein, alpha
mm9_v1_chr10_-_80488111_80488155	0.453805	GGCAGUG	AK081336|Diras1|208666|DIRAS family, GTP-binding RAS-like 1	BC057556|Diras1|208666|DIRAS family, GTP-binding RAS-like 1	NM_145217|Diras1|208666|DIRAS family, GTP-binding RAS-like 1
mm9_v1_chr13_-_54789548_54789560	0.452603	GGCAGUG	AK171943|Rnf44|105239|ring finger protein 44	AK172257|Rnf44|105239|ring finger protein 44	NM_001146027|Rnf44|105239|ring finger protein 44
mm9_v1_chr2_-_120114770_120114804	0.444287	GGCAGUG	AK167492|Pla2g4d|78390|phospholipase A2, group IVD	BC113160|Pla2g4d|78390|phospholipase A2, group IVD	BC113770|Pla2g4d|78390|phospholipase A2, group IVD	AB195276|Pla2g4d|78390|phospholipase A2, group IVD	AK145985|Pla2g4d|78390|phospholipase A2, group IVD	NM_001024137|Pla2g4d|78390|phospholipase A2, group IVD
mm9_v1_chr4_+_101091875_101091893	0.44072	GGCAGUG	AK134600|Ak4|11639|adenylate kinase 4	NM_001177602|Ak4|11639|adenylate kinase 4
mm9_v1_chr6_+_122770201_122770233	0.432658	GGCAGUG	AF253052|Foxj2|60611|forkhead box J2	NM_021899|Foxj2|60611|forkhead box J2	BC038069|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr2_+_119798434_119798434	0.423775	GGCAGUG	BC070449|Mapkbp1|26390|mitogen-activated protein kinase binding protein 1	NM_011941|Mapkbp1|26390|mitogen-activated protein kinase binding protein 1
mm9_v1_chr12_+_114252715_114252763	0.423472	GGCAGUG	NM_001081170|Pacs2|217893|phosphofurin acidic cluster sorting protein 2	AK036581|Pacs2|217893|phosphofurin acidic cluster sorting protein 2	AK054000|Pacs2|217893|phosphofurin acidic cluster sorting protein 2
mm9_v1_chr12_+_78339999_78340029	0.415842	GGCAGUG	AK048520|Fut8|53618|fucosyltransferase 8	NM_016893|Fut8|53618|fucosyltransferase 8	AK163494|Fut8|53618|fucosyltransferase 8
mm9_v1_chrX_-_138740740_138740752	0.41274	GGCAGUG	AJ131398|Kcne1l|66240|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	NM_021487|Kcne1l|66240|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene
mm9_v1_chr19_-_28085534_28085655	0.402188	GGCAGUG	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr6_-_3713622_3713622	0.401724	GGCAGUG	AK133983|Calcr|12311|calcitonin receptor	NM_001042725|Calcr|12311|calcitonin receptor
mm9_v1_chr2_-_28321788_28321851	0.401537	GGCAGUG	AY927869|1700007K13Rik|69327|RIKEN cDNA 1700007K13 gene	BC048581|1700007K13Rik|69327|RIKEN cDNA 1700007K13 gene	BC099566|1700007K13Rik|69327|RIKEN cDNA 1700007K13 gene	NM_027040|1700007K13Rik|69327|RIKEN cDNA 1700007K13 gene	AK005731|1700007K13Rik|69327|RIKEN cDNA 1700007K13 gene
mm9_v1_chr2_+_92061718_92061757	0.401364	GGCAGUG	NM_001109690|Phf21a|192285|PHD finger protein 21A	AK137085|Phf21a|192285|PHD finger protein 21A
mm9_v1_chrX_-_34529689_34529693	0.396026	GGCAGUG	NM_001177324|Sept6|56526|septin 6	NM_019942|Sept6|56526|septin 6
mm9_v1_chr10_+_95403283_95403412	0.393006	GGCAGUG	AK042055|Eea1|216238|early endosome antigen 1	NM_001001932|Eea1|216238|early endosome antigen 1	AK082278|Eea1|216238|early endosome antigen 1	AK163235|Eea1|216238|early endosome antigen 1	BC021363|Eea1|216238|early endosome antigen 1	BC075637|Eea1|216238|early endosome antigen 1	AK046231|Eea1|216238|early endosome antigen 1	AK040844|Eea1|216238|early endosome antigen 1
mm9_v1_chr15_-_103070227_103070257	0.392763	GGCAGUG	BC004707|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001076789|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr2_+_25413360_25413471	0.38966	GGCAGUG	AK003557|Edf1|59022|endothelial differentiation-related factor 1	AK002345|Edf1|59022|endothelial differentiation-related factor 1	AK010191|Edf1|59022|endothelial differentiation-related factor 1	AB030185|Edf1|59022|endothelial differentiation-related factor 1	NM_021519|Edf1|59022|endothelial differentiation-related factor 1	BC023472|Edf1|59022|endothelial differentiation-related factor 1	AJ309569|Edf1|59022|endothelial differentiation-related factor 1
mm9_v1_chr1_+_93437656_93437656	0.381554	GGCAGUG	AK006515|Asb1|65247|ankyrin repeat and SOCS box-containing 1	BC049699|Asb1|65247|ankyrin repeat and SOCS box-containing 1	NM_023046|Asb1|65247|ankyrin repeat and SOCS box-containing 1
mm9_v1_chr14_-_35401654_35401841	0.380286	GGCAGUG	AF228057|Ldb3|24131|LIM domain binding 3	AF228058|Ldb3|24131|LIM domain binding 3	AY206011|Ldb3|24131|LIM domain binding 3	AY206015|Ldb3|24131|LIM domain binding 3	AK172980|Ldb3|24131|LIM domain binding 3	NM_001039074|Ldb3|24131|LIM domain binding 3	BC138793|Ldb3|24131|LIM domain binding 3	BC145420|Ldb3|24131|LIM domain binding 3	AK142292|Ldb3|24131|LIM domain binding 3	AF114378|Ldb3|24131|LIM domain binding 3	AY206012|Ldb3|24131|LIM domain binding 3	AF114379|Ldb3|24131|LIM domain binding 3	AY206013|Ldb3|24131|LIM domain binding 3	BC099596|Ldb3|24131|LIM domain binding 3
mm9_v1_chr7_+_139802303_139802366	0.362986	GGCAGUG	NM_029609|Lhpp|76429|phospholysine phosphohistidine inorganic pyrophosphate phosphatase	AK009207|Lhpp|76429|phospholysine phosphohistidine inorganic pyrophosphate phosphatase	BC065789|Lhpp|76429|phospholysine phosphohistidine inorganic pyrophosphate phosphatase
mm9_v1_chr11_-_53448203_53448203	0.360792	GGCAGUG	M23504|Il13|16163|interleukin 13	NM_008355|Il13|16163|interleukin 13
mm9_v1_chrX_-_153853209_153853243	0.349778	GGCAGUG	U49908|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	NM_011077|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	U73910|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	AK158481|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)
mm9_v1_chr17_-_35109068_35109102	0.348569	GGCAGUG	BC054782|Hspa1a|193740|heat shock protein 1A	BC032044|Hspa1a|193740|heat shock protein 1A	AK132331|Hspa1a|193740|heat shock protein 1A	AK160912|Hspa1a|193740|heat shock protein 1A	AK171820|Hspa1a|193740|heat shock protein 1A	NM_010479|Hspa1a|193740|heat shock protein 1A
mm9_v1_chr15_+_86044834_86044934	0.340703	GGCAGUG	AK155770|Tbc1d22a|223754|TBC1 domain family, member 22a	AK154602|Tbc1d22a|223754|TBC1 domain family, member 22a	AK154226|Tbc1d22a|223754|TBC1 domain family, member 22a	AK039627|Tbc1d22a|223754|TBC1 domain family, member 22a	AK155459|Tbc1d22a|223754|TBC1 domain family, member 22a	AK146872|Tbc1d22a|223754|TBC1 domain family, member 22a	BC066009|Tbc1d22a|223754|TBC1 domain family, member 22a	NM_145476|Tbc1d22a|223754|TBC1 domain family, member 22a
mm9_v1_chr11_-_120486280_120486339	0.337397	GGCAGUG	BC026403|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	BC040759|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	BC026637|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	BC026650|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	AY251540|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	AK051725|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	AK135484|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	NM_153056|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)
mm9_v1_chr17_+_25359526_25359671	0.31992	GGCAGUG	AK004898|Unkl|74154|unkempt-like (Drosophila)	NM_028789|Unkl|74154|unkempt-like (Drosophila)	BC150842|Unkl|74154|unkempt-like (Drosophila)
mm9_v1_chr11_-_66339627_66339627	0.318784	GGCAGUG	AK147504|Shisa6|380702|shisa homolog 6 (Xenopus laevis)	NM_001034874|Shisa6|380702|shisa homolog 6 (Xenopus laevis)
mm9_v1_chr12_-_86518229_86518247	0.317579	GGCAGUG	X96793|Pgf|18654|placental growth factor	BC016567|Pgf|18654|placental growth factor	NM_008827|Pgf|18654|placental growth factor	AK042891|Pgf|18654|placental growth factor	AK088943|Pgf|18654|placental growth factor
mm9_v1_chr8_+_77557582_77557708	0.315407	GGCAGUG	NM_001136259|Tom1|21968|target of myb1 homolog (chicken)	NM_011622|Tom1|21968|target of myb1 homolog (chicken)	AJ006972|Tom1|21968|target of myb1 homolog (chicken)	AK051245|Tom1|21968|target of myb1 homolog (chicken)	BC157905|Tom1|21968|target of myb1 homolog (chicken)	BC158042|Tom1|21968|target of myb1 homolog (chicken)	BC021633|Tom1|21968|target of myb1 homolog (chicken)	AK150143|Tom1|21968|target of myb1 homolog (chicken)	AK160403|Tom1|21968|target of myb1 homolog (chicken)	AK028398|Tom1|21968|target of myb1 homolog (chicken)	BC093520|Tom1|21968|target of myb1 homolog (chicken)	AK184431|Tom1|21968|target of myb1 homolog (chicken)
mm9_v1_chr11_+_77590766_77590794	0.312813	GGCAGUG	AB026497|Myo18a|360013|myosin XVIIIA	NM_011586|Myo18a|360013|myosin XVIIIA	BC138366|Myo18a|360013|myosin XVIIIA	BC145257|Myo18a|360013|myosin XVIIIA
mm9_v1_chr2_+_173902521_173902654	0.311862	GGCAGUG	AK078110|Stx16|228960|syntaxin 16	NM_001102423|Stx16|228960|syntaxin 16	NM_001102424|Stx16|228960|syntaxin 16	NM_001102425|Stx16|228960|syntaxin 16	NM_172675|Stx16|228960|syntaxin 16	BC094436|Stx16|228960|syntaxin 16	BC095989|Stx16|228960|syntaxin 16	BC138544|Stx16|228960|syntaxin 16
mm9_v1_chr1_-_194681914_194681945	0.308183	GGCAGUG	BC060251|Sertad4|214791|SERTA domain containing 4	NM_198247|Sertad4|214791|SERTA domain containing 4
mm9_v1_chr7_+_142729505_142729604	0.305989	GGCAGUG	AK004602|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	NM_011212|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	U35368|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	BC024631|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	AK132455|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	U62387|Ptpre|19267|protein tyrosine phosphatase, receptor type, E
mm9_v1_chr1_+_88600370_88600431	0.30457	GGCAGUG	AK050762|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	NM_001172157|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	NM_153530|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	AK079867|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	AK031180|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	AK029652|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	AK040613|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	BC036177|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2
mm9_v1_chr10_+_60760581_60760583	0.301235	GGCAGUG	X60165|Prf1|18646|perforin 1 (pore forming protein)	BC132300|Prf1|18646|perforin 1 (pore forming protein)	BC137962|Prf1|18646|perforin 1 (pore forming protein)	NM_011073|Prf1|18646|perforin 1 (pore forming protein)
mm9_v1_chr10_-_77365164_77365282	0.298141	GGCAGUG	AY061858|Lrrc3|237387|leucine rich repeat containing 3	AK043535|Lrrc3|237387|leucine rich repeat containing 3	NM_145152|Lrrc3|237387|leucine rich repeat containing 3
mm9_v1_chr14_-_55400722_55400814	0.289837	GGCAGUG	BC059004|Slc7a8|50934|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	NM_016972|Slc7a8|50934|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	AK044620|Slc7a8|50934|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8
mm9_v1_chrX_+_7274259_7274353	0.285084	GGCAGUG	NM_173747|Gpkow|209416|G patch domain and KOW motifs	AK017864|Gpkow|209416|G patch domain and KOW motifs	AK144167|Gpkow|209416|G patch domain and KOW motifs	AK028433|Gpkow|209416|G patch domain and KOW motifs	BC092224|Gpkow|209416|G patch domain and KOW motifs
mm9_v1_chr11_+_62944973_62945074	0.28004	GGCAGUG	NM_008885|Pmp22|18858|peripheral myelin protein 22	M32240|Pmp22|18858|peripheral myelin protein 22	BC010765|Pmp22|18858|peripheral myelin protein 22	AK076005|Pmp22|18858|peripheral myelin protein 22	AK171745|Pmp22|18858|peripheral myelin protein 22
mm9_v1_chr4_-_46579311_46579311	0.274062	GGCAGUG	AK030097|Coro2a|107684|coronin, actin binding protein 2A	NM_178893|Coro2a|107684|coronin, actin binding protein 2A
mm9_v1_chr3_+_5218545_5218658	0.267724	GGCAGUG	AK084213|Zfhx4|80892|zinc finger homeodomain 4	BC061199|Zfhx4|80892|zinc finger homeodomain 4	NM_030708|Zfhx4|80892|zinc finger homeodomain 4	AK044540|Zfhx4|80892|zinc finger homeodomain 4
mm9_v1_chr16_+_32914183_32914232	0.260906	GGCAGUG	AK155550|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	NM_001081255|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	AK076529|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC151058|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC157924|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC172144|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	AK133482|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3
mm9_v1_chr11_+_80196766_80196898	0.238869	GGCAGUG	AK087885|Zfp207|22680|zinc finger protein 207	NM_001130169|Zfp207|22680|zinc finger protein 207	NM_001130170|Zfp207|22680|zinc finger protein 207	NM_001130171|Zfp207|22680|zinc finger protein 207	NM_011751|Zfp207|22680|zinc finger protein 207	AK140139|Zfp207|22680|zinc finger protein 207	AK146787|Zfp207|22680|zinc finger protein 207	AK159683|Zfp207|22680|zinc finger protein 207	AK033497|Zfp207|22680|zinc finger protein 207	BC003715|Zfp207|22680|zinc finger protein 207	AB013357|Zfp207|22680|zinc finger protein 207	AB032196|Zfp207|22680|zinc finger protein 207
mm9_v1_chr2_+_28496752_28496773	0.236754	GGCAGUG	AK030318|Tsc1|64930|tuberous sclerosis 1	AJ271912|Tsc1|64930|tuberous sclerosis 1	AK147428|Tsc1|64930|tuberous sclerosis 1	NM_022887|Tsc1|64930|tuberous sclerosis 1	AK083363|Tsc1|64930|tuberous sclerosis 1	AK078140|Tsc1|64930|tuberous sclerosis 1	AK154416|Tsc1|64930|tuberous sclerosis 1
mm9_v1_chr4_-_45024999_45025283	0.236528	GGCAGUG	AK160003|Zbtb5|230119|zinc finger and BTB domain containing 5	BC054551|Zbtb5|230119|zinc finger and BTB domain containing 5	AK031172|Zbtb5|230119|zinc finger and BTB domain containing 5	AY635051|Zbtb5|230119|zinc finger and BTB domain containing 5	BC057545|Zbtb5|230119|zinc finger and BTB domain containing 5	NM_001163283|Zbtb5|230119|zinc finger and BTB domain containing 5	NM_001163284|Zbtb5|230119|zinc finger and BTB domain containing 5	NM_173399|Zbtb5|230119|zinc finger and BTB domain containing 5
mm9_v1_chr15_-_27955602_27955621	0.230946	GGCAGUG	NM_001081302|Trio|223435|triple functional domain (PTPRF interacting)
mm9_v1_chr2_-_130455670_130455749	0.230462	GGCAGUG	BC052898|Fastkd5|380601|FAST kinase domains 5	AF360997|Ubox5|140629|U box domain containing 5	AK034114|Ubox5|140629|U box domain containing 5	NM_080562|Ubox5|140629|U box domain containing 5	AK158052|Ubox5|140629|U box domain containing 5	AK171070|Ubox5|140629|U box domain containing 5	AK005195|Ubox5|140629|U box domain containing 5	AK143929|Fastkd5|380601|FAST kinase domains 5	AK170100|Ubox5|140629|U box domain containing 5
mm9_v1_chr1_+_174412343_174412487	0.229628	GGCAGUG	NM_001145800|Igsf9|93842|immunoglobulin superfamily, member 9	AK053544|Igsf9|93842|immunoglobulin superfamily, member 9	AK078536|Igsf9|93842|immunoglobulin superfamily, member 9	BC034594|Igsf9|93842|immunoglobulin superfamily, member 9	AK145121|Igsf9|93842|immunoglobulin superfamily, member 9	AF317839|Igsf9|93842|immunoglobulin superfamily, member 9	NM_033608|Igsf9|93842|immunoglobulin superfamily, member 9	BC040281|Igsf9|93842|immunoglobulin superfamily, member 9
mm9_v1_chr5_+_125343060_125343124	0.221911	GGCAGUG	AK143192|Zfp664|269704|zinc finger protein 664	AK086580|Zfp664|269704|zinc finger protein 664	AK039671|Zfp664|269704|zinc finger protein 664	NM_001081750|Zfp664|269704|zinc finger protein 664	AK165974|Zfp664|269704|zinc finger protein 664
mm9_v1_chr14_-_35401845_35401867	0.216058	GGCAGUG	AK084461|Ldb3|24131|LIM domain binding 3	AK137181|Ldb3|24131|LIM domain binding 3	AJ005621|Ldb3|24131|LIM domain binding 3	NM_001039071|Ldb3|24131|LIM domain binding 3	NM_001039072|Ldb3|24131|LIM domain binding 3	NM_001039073|Ldb3|24131|LIM domain binding 3	NM_001039075|Ldb3|24131|LIM domain binding 3	NM_001039076|Ldb3|24131|LIM domain binding 3	NM_011918|Ldb3|24131|LIM domain binding 3	AK004020|Ldb3|24131|LIM domain binding 3
mm9_v1_chr8_-_83404377_83404428	0.211876	GGCAGUG	BC007483|Gab1|14388|growth factor receptor bound protein 2-associated protein 1	NM_021356|Gab1|14388|growth factor receptor bound protein 2-associated protein 1	AK155423|Gab1|14388|growth factor receptor bound protein 2-associated protein 1	AK132176|Gab1|14388|growth factor receptor bound protein 2-associated protein 1
mm9_v1_chr11_-_3352243_3352377	0.211627	GGCAGUG	AK167455|Rnf185|193670|ring finger protein 185	AK077638|Rnf185|193670|ring finger protein 185	BC014812|Rnf185|193670|ring finger protein 185	AK149640|Rnf185|193670|ring finger protein 185	AK168904|Rnf185|193670|ring finger protein 185	AK053358|Rnf185|193670|ring finger protein 185	AK034108|Rnf185|193670|ring finger protein 185	NM_145355|Rnf185|193670|ring finger protein 185	AK052436|Rnf185|193670|ring finger protein 185
mm9_v1_chrX_-_34529439_34529513	0.204562	GGCAGUG	AB023622|Sept6|56526|septin 6	AK088614|Sept6|56526|septin 6	AK088406|Sept6|56526|septin 6	AK172894|Sept6|56526|septin 6	BC010489|Sept6|56526|septin 6	AK012858|Sept6|56526|septin 6	AK160884|Sept6|56526|septin 6	AK083302|Sept6|56526|septin 6	AK162755|Sept6|56526|septin 6	AK048455|Sept6|56526|septin 6	NM_001177323|Sept6|56526|septin 6
mm9_v1_chr1_+_162908733_162908776	0.1946	GGCAGUG	NM_080844|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	BC019447|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chr9_-_42072373_42072382	0.18644	GGCAGUG	NM_172769|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)
mm9_v1_chr2_+_155207581_155207616	0.156512	GGCAGUG	AJ297793|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK146589|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	BC043086|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	NM_178111|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK149495|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr19_-_41818345_41818345	0.15622	GGCAGUG	NM_015748|Slit1|20562|slit homolog 1 (Drosophila)
mm9_v1_chr19_-_12576485_12576634	0.154904	GGCAGUG	NM_172442|Dtx4|207521|deltex 4 homolog (Drosophila)
mm9_v1_chr6_+_86145220_86145449	0.146298	GGCAGUG	AK010785|Tgfa|21802|transforming growth factor alpha	AK165017|Tgfa|21802|transforming growth factor alpha	NM_031199|Tgfa|21802|transforming growth factor alpha	AK166321|Tgfa|21802|transforming growth factor alpha	U65016|Tgfa|21802|transforming growth factor alpha	BC132185|Tgfa|21802|transforming growth factor alpha	BC132211|Tgfa|21802|transforming growth factor alpha
mm9_v1_chr6_+_147039596_147039596	0.144148	GGCAGUG	NM_001081237|Klhdc5|232539|kelch domain containing 5
mm9_v1_chr9_-_64799413_64799413	0.134757	GGCAGUG	BC016094|Slc24a1|214111|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	NM_144813|Slc24a1|214111|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1
mm9_v1_chr4_-_107356766_107356766	0.101812	GGCAGUG	AF542048|Dmrtb1|56296|DMRT-like family B with proline-rich C-terminal, 1	NM_019872|Dmrtb1|56296|DMRT-like family B with proline-rich C-terminal, 1
mm9_v1_chr1_-_90406613_90406640	0.089949	GGCAGUG	BC139128|Glrp1|14659|glutamine repeat protein 1	BC139129|Glrp1|14659|glutamine repeat protein 1	NM_008132|Glrp1|14659|glutamine repeat protein 1	U46463|Glrp1|14659|glutamine repeat protein 1
mm9_v1_chr3_+_88489708_88489765	0.0836293	GGCAGUG	NM_028814|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK170490|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK038617|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	BC006621|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK012969|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK173057|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK083018|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK164337|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK020778|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene
mm9_v1_chr4_+_124334876_124334927	0.07928	GGCAGUG	NM_011141|Pou3f1|18991|POU domain, class 3, transcription factor 1	X54628|Pou3f1|18991|POU domain, class 3, transcription factor 1	X56959|Pou3f1|18991|POU domain, class 3, transcription factor 1	X57482|Pou3f1|18991|POU domain, class 3, transcription factor 1
mm9_v1_chr7_-_71083734_71083823	0.077885	GGCAGUG	AJ245644|Klf13|50794|Kruppel-like factor 13	AJ275987|Klf13|50794|Kruppel-like factor 13	BC051557|Klf13|50794|Kruppel-like factor 13	AK155298|Klf13|50794|Kruppel-like factor 13	AF251796|Klf13|50794|Kruppel-like factor 13	NM_021366|Klf13|50794|Kruppel-like factor 13
mm9_v1_chr9_+_121669121_121669172	0.0746862	GGCAGUG	NM_001166644|Zfp651|270210|zinc finger protein 651
mm9_v1_chr2_-_38569891_38570061	0.0736879	GGCAGUG	AF511594|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	BC110476|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	BC110477|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	AK144376|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	AK156911|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	AK134378|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	NM_139051|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1
mm9_v1_chr1_+_36568707_36568722	0.0705982	GGCAGUG	NM_001039551|Cnnm3|94218|cyclin M3	NM_053186|Cnnm3|94218|cyclin M3
mm9_v1_chr7_+_30553570_30553676	0.0665841	GGCAGUG	AK145426|Zfp84|74352|zinc finger protein 84	NM_023750|Zfp84|74352|zinc finger protein 84	AK014610|Zfp84|74352|zinc finger protein 84	AK158422|Zfp84|74352|zinc finger protein 84	BC008540|Zfp84|74352|zinc finger protein 84	AK046223|Zfp84|74352|zinc finger protein 84	AK083748|Zfp84|74352|zinc finger protein 84	AK034259|Zfp84|74352|zinc finger protein 84
mm9_v1_chr14_-_65881225_65881304	0.0455575	GGCAGUG	BC066186|Fzd3|14365|frizzled homolog 3 (Drosophila)	BC103714|Fzd3|14365|frizzled homolog 3 (Drosophila)	AK134261|Fzd3|14365|frizzled homolog 3 (Drosophila)	AK160554|Fzd3|14365|frizzled homolog 3 (Drosophila)	BC050965|Fzd3|14365|frizzled homolog 3 (Drosophila)	NM_021458|Fzd3|14365|frizzled homolog 3 (Drosophila)
mm9_v1_chr9_-_57682040_57682040	0.0435775	GGCAGUG	AF116847|Arid3b|56380|AT rich interactive domain 3B (BRIGHT-like)	BC145330|Arid3b|56380|AT rich interactive domain 3B (BRIGHT-like)	BC150755|Arid3b|56380|AT rich interactive domain 3B (BRIGHT-like)	NM_019689|Arid3b|56380|AT rich interactive domain 3B (BRIGHT-like)
mm9_v1_chr15_+_58247016_58247063	0.0431934	GGCAGUG	AK137324|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	NM_145959|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	BC070426|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed
mm9_v1_chr19_+_22522646_22522721	0.0296872	GGCAGUG	AK044454|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_177341|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	BC141400|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	BC141412|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3
mm9_v1_chr17_+_25325344_25325353	0.0215868	GGCAGUG	NM_001197024|Unkl|74154|unkempt-like (Drosophila)
mm9_v1_chr17_-_35096167_35096196	0.019317	GGCAGUG	BC032044|Hspa1a|193740|heat shock protein 1A	AK159139|Hspa1b|15511|heat shock protein 1B	BC151107|Hspa1b|15511|heat shock protein 1B	BC151109|Hspa1b|15511|heat shock protein 1B	AK165042|Hspa1b|15511|heat shock protein 1B	NM_010478|Hspa1b|15511|heat shock protein 1B
mm9_v1_chr15_+_73553574_73553574	0.0135729	GGCAGUG	NM_001166389|Ptp4a3|19245|protein tyrosine phosphatase 4a3	NM_001166390|Ptp4a3|19245|protein tyrosine phosphatase 4a3
mm9_v1_chr5_+_28643698_28643741	0.00836244	GGCAGUG	NM_028234|Rbm33|381626|RNA binding motif protein 33	AK014289|Rbm33|381626|RNA binding motif protein 33
mm9_v1_chr19_+_11011649_11011669	0.0016479	GGCAGUG	AB109092|Gpr44|14764|G protein-coupled receptor 44	NM_009962|Gpr44|14764|G protein-coupled receptor 44	AK041947|Gpr44|14764|G protein-coupled receptor 44	BC111906|Gpr44|14764|G protein-coupled receptor 44
mm9_v1_chr6_-_128093543_128093604	0.00122474	GGCAGUG	AK079139|Tspan9|109246|tetraspanin 9	BC052503|Tspan9|109246|tetraspanin 9	AK158729|Tspan9|109246|tetraspanin 9	NM_175414|Tspan9|109246|tetraspanin 9
