mm9_v1_chr17_+_37182910_37182979	30.5733	GLI1..3.p2	BC054735|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1	NM_019439|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1	AK156397|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1	AK159584|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1
mm9_v1_chr8_+_56040193_56040201	26.0566	GLI1..3.p2	AK081877|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr8_+_56040211_56040342	25.2324	GLI1..3.p2	BC043130|Gpm6a|234267|glycoprotein m6a	AK147245|Gpm6a|234267|glycoprotein m6a	AK147280|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr8_+_56040553_56040581	23.6784	GLI1..3.p2	BC024759|Gpm6a|234267|glycoprotein m6a	BC033394|Gpm6a|234267|glycoprotein m6a	S65735|Gpm6a|234267|glycoprotein m6a	BC029711|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr8_+_56040445_56040534	23.0368	GLI1..3.p2	BC029683|Gpm6a|234267|glycoprotein m6a	BC033357|Gpm6a|234267|glycoprotein m6a	AK053538|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr8_+_56040080_56040120	22.7756	GLI1..3.p2	NM_153581|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr9_+_43875175_43875249	20.4536	GLI1..3.p2	AY255638|Usp2|53376|ubiquitin specific peptidase 2	AY255639|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr13_-_100286521_100286556	19.9663	GLI1..3.p2	NM_008634|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr8_-_67171481_67171562	19.427	GLI1..3.p2	AK002935|Cpe|12876|carboxypeptidase E	AK013509|Cpe|12876|carboxypeptidase E
mm9_v1_chr7_-_82453216_82453273	19.0616	GLI1..3.p2	AK147261|Sv2b|64176|synaptic vesicle glycoprotein 2 b	NM_001109753|Sv2b|64176|synaptic vesicle glycoprotein 2 b
mm9_v1_chr8_-_67171692_67171792	18.8642	GLI1..3.p2	U23184|Cpe|12876|carboxypeptidase E	X61232|Cpe|12876|carboxypeptidase E
mm9_v1_chr13_-_100286446_100286519	18.7143	GLI1..3.p2	BC019183|Mtap1b|17755|microtubule-associated protein 1B	BC046287|Mtap1b|17755|microtubule-associated protein 1B	BC052016|Mtap1b|17755|microtubule-associated protein 1B	BC078457|Mtap1b|17755|microtubule-associated protein 1B	BC138033|Mtap1b|17755|microtubule-associated protein 1B	BC138034|Mtap1b|17755|microtubule-associated protein 1B	BC037105|Mtap1b|17755|microtubule-associated protein 1B	X51396|Mtap1b|17755|microtubule-associated protein 1B	AK158307|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr8_-_67171805_67171871	18.7076	GLI1..3.p2	AK047891|Cpe|12876|carboxypeptidase E	BC010197|Cpe|12876|carboxypeptidase E	NM_013494|Cpe|12876|carboxypeptidase E	AK160097|Cpe|12876|carboxypeptidase E
mm9_v1_chr9_+_43875103_43875168	18.1385	GLI1..3.p2	NM_198092|Usp2|53376|ubiquitin specific peptidase 2	AK138799|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr1_-_137063881_137064000	17.9993	GLI1..3.p2	BC127619|Gpr37l1|171469|G protein-coupled receptor 37-like 1	BC127620|Gpr37l1|171469|G protein-coupled receptor 37-like 1	BC098482|Gpr37l1|171469|G protein-coupled receptor 37-like 1	AB016602|Gpr37l1|171469|G protein-coupled receptor 37-like 1
mm9_v1_chr7_+_138122822_138122930	17.4661	GLI1..3.p2	AK090321|Htra1|56213|HtrA serine peptidase 1
mm9_v1_chr2_+_157385835_157385932	17.1783	GLI1..3.p2	AK003004|Nnat|18111|neuronatin	AK077465|Nnat|18111|neuronatin	AK160626|Nnat|18111|neuronatin	NM_010923|Nnat|18111|neuronatin	NM_180960|Nnat|18111|neuronatin	X83569|Nnat|18111|neuronatin	X83570|Nnat|18111|neuronatin	BC036984|Nnat|18111|neuronatin	AB004048|Nnat|18111|neuronatin	X83568|Nnat|18111|neuronatin
mm9_v1_chr13_-_78337844_78338043	17.1021	GLI1..3.p2	U07625|Nr2f1|13865|nuclear receptor subfamily 2, group F, member 1	BC048695|Nr2f1|13865|nuclear receptor subfamily 2, group F, member 1
mm9_v1_chr12_+_45429966_45429998	17.0347	GLI1..3.p2	AJ543321|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule
mm9_v1_chr12_+_45429913_45429941	16.7899	GLI1..3.p2	AK087693|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule	AK122252|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule
mm9_v1_chr1_-_137064124_137064257	16.3734	GLI1..3.p2	AK158275|Gpr37l1|171469|G protein-coupled receptor 37-like 1	NM_134438|Gpr37l1|171469|G protein-coupled receptor 37-like 1
mm9_v1_chr10_-_61573705_61573762	16.2277	GLI1..3.p2	BC024943|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene	AK008338|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene	AK035688|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene	NM_027251|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene
mm9_v1_chr19_-_5085487_5085548	15.6468	GLI1..3.p2	AK144531|Tmem151a|381199|transmembrane protein 151A	AK155690|Tmem151a|381199|transmembrane protein 151A	AK163651|Tmem151a|381199|transmembrane protein 151A	AK139456|Tmem151a|381199|transmembrane protein 151A
mm9_v1_chr7_-_82453166_82453213	15.5798	GLI1..3.p2	AK139478|Sv2b|64176|synaptic vesicle glycoprotein 2 b	AK140104|Sv2b|64176|synaptic vesicle glycoprotein 2 b	AK035927|Sv2b|64176|synaptic vesicle glycoprotein 2 b	AK043830|Sv2b|64176|synaptic vesicle glycoprotein 2 b
mm9_v1_chr4_-_150482562_150482580	15.1645	GLI1..3.p2	AK168378|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr13_+_48356487_48356596	15.1152	GLI1..3.p2	AK041164|Id4|15904|inhibitor of DNA binding 4
mm9_v1_chr8_+_46744023_46744252	15.0798	GLI1..3.p2	AK079130|Sorbs2|234214|sorbin and SH3 domain containing 2	AK140498|Sorbs2|234214|sorbin and SH3 domain containing 2	AK050951|Sorbs2|234214|sorbin and SH3 domain containing 2	BC039163|Sorbs2|234214|sorbin and SH3 domain containing 2
mm9_v1_chr13_+_48356795_48356817	14.9162	GLI1..3.p2	NM_031166|Id4|15904|inhibitor of DNA binding 4	X75018|Id4|15904|inhibitor of DNA binding 4	BC145367|Id4|15904|inhibitor of DNA binding 4
mm9_v1_chr11_-_41995688_41995930	14.8349	GLI1..3.p2	X61430|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	AK039496|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	M86566|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm9_v1_chr4_-_68615283_68615343	14.6687	GLI1..3.p2	AK045420|Dbc1|56710|deleted in bladder cancer 1 (human)	AK028321|Dbc1|56710|deleted in bladder cancer 1 (human)
mm9_v1_chr16_+_18777032_18777088	14.6536	GLI1..3.p2	U82758|Cldn5|12741|claudin 5	AF087823|Cldn5|12741|claudin 5
mm9_v1_chr11_-_41813792_41813857	14.5296	GLI1..3.p2	AK047085|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK136889|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	NM_177408|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233775|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233776|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233777|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233778|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233779|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233780|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233781|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233782|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233783|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233784|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233785|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233786|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233787|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233788|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233789|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233790|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233791|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233792|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233793|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233794|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233795|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233796|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233797|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233798|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233799|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233800|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233801|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233802|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK141129|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK049857|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm9_v1_chr15_+_91881593_91881615	14.5168	GLI1..3.p2	AK138969|Cntn1|12805|contactin 1	NM_001159648|Cntn1|12805|contactin 1
mm9_v1_chr9_-_54509453_54509528	14.5164	GLI1..3.p2	AK129179|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	BC057322|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	AK054103|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1
mm9_v1_chr4_-_68615382_68615433	14.2484	GLI1..3.p2	BC048789|Dbc1|56710|deleted in bladder cancer 1 (human)	BC079630|Dbc1|56710|deleted in bladder cancer 1 (human)	AB060589|Dbc1|56710|deleted in bladder cancer 1 (human)	NM_019967|Dbc1|56710|deleted in bladder cancer 1 (human)
mm9_v1_chr9_-_54509658_54509691	14.1895	GLI1..3.p2	AB050554|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	NM_053178|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1
mm9_v1_chr1_-_175266945_175266952	14.1458	GLI1..3.p2	AK031927|Cadm3|94332|cell adhesion molecule 3
mm9_v1_chr13_+_46597271_46597443	14.0817	GLI1..3.p2	AK035556|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)	NM_026056|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)
mm9_v1_chr16_-_28445276_28445356	13.5841	GLI1..3.p2	U66201|Fgf12|14167|fibroblast growth factor 12	AK034335|Fgf12|14167|fibroblast growth factor 12	NM_183064|Fgf12|14167|fibroblast growth factor 12	AF020738|Fgf12|14167|fibroblast growth factor 12
mm9_v1_chr11_+_68505612_68505615	13.321	GLI1..3.p2	AK029236|Myh10|77579|myosin, heavy polypeptide 10, non-muscle	BC098465|Myh10|77579|myosin, heavy polypeptide 10, non-muscle
mm9_v1_chr7_-_74879894_74880008	13.2621	GLI1..3.p2	BC042785|Synm|233335|synemin, intermediate filament protein
mm9_v1_chr3_-_117063090_117063169	13.1972	GLI1..3.p2	AK079635|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm9_v1_chr11_+_68505616_68505655	13.1642	GLI1..3.p2	AK045066|Myh10|77579|myosin, heavy polypeptide 10, non-muscle	AK045074|Myh10|77579|myosin, heavy polypeptide 10, non-muscle	BC089011|Myh10|77579|myosin, heavy polypeptide 10, non-muscle
mm9_v1_chr19_+_4711207_4711210	13.1552	GLI1..3.p2	AK147671|Spnb3|20743|spectrin beta 3
mm9_v1_chr13_+_46597461_46597559	13.1243	GLI1..3.p2	AK049813|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)	BC050752|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)	AK013331|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)	AK033071|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)	AK010235|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)
mm9_v1_chr4_-_4065585_4065591	13.0259	GLI1..3.p2	M55181|Penk|18619|preproenkephalin	BC049766|Penk|18619|preproenkephalin	NM_001002927|Penk|18619|preproenkephalin
mm9_v1_chr9_+_109834266_109834307	13.0075	GLI1..3.p2	NM_008633|Mtap4|17758|microtubule-associated protein 4	AK046825|Mtap4|17758|microtubule-associated protein 4
mm9_v1_chr12_+_45429857_45429887	12.954	GLI1..3.p2	AK043838|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule	NM_001146031|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule	NM_176930|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule
mm9_v1_chr12_+_75098739_75098790	12.6174	GLI1..3.p2	AK137129|Syt16|238266|synaptotagmin XVI	AK032606|Syt16|238266|synaptotagmin XVI	NM_172804|Syt16|238266|synaptotagmin XVI
mm9_v1_chr2_-_80421054_80421454	12.5854	GLI1..3.p2	AK195509|Nckap1|50884|NCK-associated protein 1	AK191629|Nckap1|50884|NCK-associated protein 1	AK194160|Nckap1|50884|NCK-associated protein 1	AK198467|Nckap1|50884|NCK-associated protein 1	AK204199|Nckap1|50884|NCK-associated protein 1	AK213144|Nckap1|50884|NCK-associated protein 1	BC127067|Nckap1|50884|NCK-associated protein 1	AJ534525|Nckap1|50884|NCK-associated protein 1	NM_016965|Nckap1|50884|NCK-associated protein 1	BC060197|Nckap1|50884|NCK-associated protein 1
mm9_v1_chr19_-_5085471_5085483	12.4535	GLI1..3.p2	BC072634|Tmem151a|381199|transmembrane protein 151A	NM_001001885|Tmem151a|381199|transmembrane protein 151A
mm9_v1_chr7_-_88599560_88599643	12.375	GLI1..3.p2	BC125476|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	BC144948|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	NM_007755|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	Y08260|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	AK136088|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1
mm9_v1_chr2_+_28048511_28048566	12.2967	GLI1..3.p2	D78264|Olfm1|56177|olfactomedin 1	D78265|Olfm1|56177|olfactomedin 1
mm9_v1_chr10_-_126700387_126700418	12.2805	GLI1..3.p2	AK220479|Kif5a|16572|kinesin family member 5A	AK140769|Kif5a|16572|kinesin family member 5A	NM_001039000|Kif5a|16572|kinesin family member 5A	NM_008447|Kif5a|16572|kinesin family member 5A
mm9_v1_chr4_-_4065205_4065229	12.233	GLI1..3.p2	M13227|Penk|18619|preproenkephalin
mm9_v1_chr13_+_46597448_46597458	12.1206	GLI1..3.p2	BC057937|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)
mm9_v1_chr9_+_109834324_109834425	11.9779	GLI1..3.p2	AK166672|Mtap4|17758|microtubule-associated protein 4	AK034206|Mtap4|17758|microtubule-associated protein 4	BC044654|Mtap4|17758|microtubule-associated protein 4	AK163450|Mtap4|17758|microtubule-associated protein 4	BC055332|Mtap4|17758|microtubule-associated protein 4	BC050893|Mtap4|17758|microtubule-associated protein 4
mm9_v1_chr7_+_25266986_25267120	11.8701	GLI1..3.p2	AK143204|Cadm4|260299|cell adhesion molecule 4	NM_153112|Cadm4|260299|cell adhesion molecule 4	AY059394|Cadm4|260299|cell adhesion molecule 4
mm9_v1_chr2_+_49474775_49474833	11.6899	GLI1..3.p2	BC067051|Kif5c|16574|kinesin family member 5C	NM_008449|Kif5c|16574|kinesin family member 5C
mm9_v1_chr12_-_112910475_112910550	11.6783	GLI1..3.p2	BC106109|Ckb|12709|creatine kinase, brain	BC015271|Ckb|12709|creatine kinase, brain	AK014299|Ckb|12709|creatine kinase, brain	BC058257|Ckb|12709|creatine kinase, brain	AK148885|Ckb|12709|creatine kinase, brain	AK152388|Ckb|12709|creatine kinase, brain	AK153484|Ckb|12709|creatine kinase, brain	AK161990|Ckb|12709|creatine kinase, brain	AK002467|Ckb|12709|creatine kinase, brain	AK165779|Ckb|12709|creatine kinase, brain	AK166980|Ckb|12709|creatine kinase, brain	AK167034|Ckb|12709|creatine kinase, brain	NM_021273|Ckb|12709|creatine kinase, brain
mm9_v1_chr11_+_101107635_101107647	11.6577	GLI1..3.p2	NM_019444|Ramp2|54409|receptor (calcitonin) activity modifying protein 2
mm9_v1_chr16_+_18776936_18776949	11.5993	GLI1..3.p2	AK077282|Cldn5|12741|claudin 5	NM_013805|Cldn5|12741|claudin 5	AF035814|Cldn5|12741|claudin 5	BC083341|Cldn5|12741|claudin 5
mm9_v1_chr3_-_26230791_26230830	11.4066	GLI1..3.p2	AK083116|Nlgn1|192167|neuroligin 1	AK122433|Nlgn1|192167|neuroligin 1	NM_138666|Nlgn1|192167|neuroligin 1
mm9_v1_chr10_+_68996455_68996596	11.4032	GLI1..3.p2	NM_146005|Ank3|11735|ankyrin 3, epithelial	NM_170688|Ank3|11735|ankyrin 3, epithelial	NM_170689|Ank3|11735|ankyrin 3, epithelial	NM_170690|Ank3|11735|ankyrin 3, epithelial	NM_170728|Ank3|11735|ankyrin 3, epithelial	NM_170729|Ank3|11735|ankyrin 3, epithelial	NM_170730|Ank3|11735|ankyrin 3, epithelial	AK162547|Ank3|11735|ankyrin 3, epithelial	AK042330|Ank3|11735|ankyrin 3, epithelial	BC021657|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr7_-_52625929_52625989	11.3219	GLI1..3.p2	AF173082|Lin7b|22342|lin-7 homolog B (C. elegans)	NM_011698|Lin7b|22342|lin-7 homolog B (C. elegans)	AF087694|Lin7b|22342|lin-7 homolog B (C. elegans)	AK019299|Lin7b|22342|lin-7 homolog B (C. elegans)	BC031780|Lin7b|22342|lin-7 homolog B (C. elegans)
mm9_v1_chr16_+_5884885_5884885	11.2844	GLI1..3.p2	BC053009|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	NM_021477|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr1_+_154802091_154802137	11.2841	GLI1..3.p2	AK084041|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2	AK083532|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr3_+_68298129_68298184	11.2623	GLI1..3.p2	AK146930|Schip1|30953|schwannomin interacting protein 1	AK168005|Schip1|30953|schwannomin interacting protein 1
mm9_v1_chr2_+_49474840_49474940	11.2406	GLI1..3.p2	AK158884|Kif5c|16574|kinesin family member 5C	AB093244|Kif5c|16574|kinesin family member 5C
mm9_v1_chr4_+_43644806_43644806	11.061	GLI1..3.p2	BC042470|Npr2|230103|natriuretic peptide receptor 2	NM_173788|Npr2|230103|natriuretic peptide receptor 2
mm9_v1_chr16_+_18776955_18776963	10.9389	GLI1..3.p2	BC002016|Cldn5|12741|claudin 5
mm9_v1_chr7_+_89319681_89319705	10.9217	GLI1..3.p2	BC027096|Sh3gl3|20408|SH3-domain GRB2-like 3
mm9_v1_chr12_+_3365295_3365555	10.8575	GLI1..3.p2	AK147572|Kif3c|16570|kinesin family member 3C	BC062648|Kif3c|16570|kinesin family member 3C	AF013116|Kif3c|16570|kinesin family member 3C
mm9_v1_chr5_+_89316245_89316323	10.6775	GLI1..3.p2	NM_001136260|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	NM_001197147|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	NM_018760|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	HQ204220|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	AF020195|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	BC129863|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	BC148292|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	BC129864|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4
mm9_v1_chr11_-_41814008_41814185	10.6375	GLI1..3.p2	M86572|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	BC031762|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	M62374|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	NM_008073|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK034338|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm9_v1_chr11_+_68505416_68505481	10.6169	GLI1..3.p2	NM_175260|Myh10|77579|myosin, heavy polypeptide 10, non-muscle
mm9_v1_chr6_-_124719465_124719591	10.6011	GLI1..3.p2	BC009018|Eno2|13807|enolase 2, gamma neuronal	BC031739|Eno2|13807|enolase 2, gamma neuronal	NM_013509|Eno2|13807|enolase 2, gamma neuronal	AK003051|Eno2|13807|enolase 2, gamma neuronal	AK146655|Eno2|13807|enolase 2, gamma neuronal	X52380|Eno2|13807|enolase 2, gamma neuronal	AK131652|Eno2|13807|enolase 2, gamma neuronal
mm9_v1_chr4_-_58566053_58566195	10.5538	GLI1..3.p2	BC025425|Lpar1|14745|lysophosphatidic acid receptor 1	AK030330|Lpar1|14745|lysophosphatidic acid receptor 1	NM_172989|Lpar1|14745|lysophosphatidic acid receptor 1
mm9_v1_chr2_+_106533281_106533425	10.5503	GLI1..3.p2	AK165186|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr16_+_5885447_5885760	10.5031	GLI1..3.p2	AB041596|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	AK158194|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chrX_-_70905384_70905478	10.4528	GLI1..3.p2	BC055891|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	BC051996|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	AK158755|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase
mm9_v1_chr19_+_4711220_4711230	10.4484	GLI1..3.p2	BC079860|Spnb3|20743|spectrin beta 3	NM_021287|Spnb3|20743|spectrin beta 3
mm9_v1_chr12_-_71448300_71448379	10.3647	GLI1..3.p2	AK129109|Trim9|94090|tripartite motif-containing 9	AK049907|Trim9|94090|tripartite motif-containing 9	AK035807|Trim9|94090|tripartite motif-containing 9	AK028280|Trim9|94090|tripartite motif-containing 9	AK048875|Trim9|94090|tripartite motif-containing 9	AK163123|Trim9|94090|tripartite motif-containing 9
mm9_v1_chr1_+_50984361_50984403	10.3125	GLI1..3.p2	AB041565|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	AK029307|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	NM_019790|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	AK076254|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	AK135038|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	BC034850|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	AB017270|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2
mm9_v1_chr11_+_78312784_78312851	10.3097	GLI1..3.p2	X63003|Vtn|22370|vitronectin	BC012690|Vtn|22370|vitronectin	AF440693|Vtn|22370|vitronectin	M77123|Vtn|22370|vitronectin
mm9_v1_chr9_+_43893029_43893066	10.3039	GLI1..3.p2	AB041799|Usp2|53376|ubiquitin specific peptidase 2	AY255637|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr13_+_93195850_93196061	10.1721	GLI1..3.p2	AK078203|Ankrd34b|218440|ankyrin repeat domain 34B	AK090387|Ankrd34b|218440|ankyrin repeat domain 34B	NM_175455|Ankrd34b|218440|ankyrin repeat domain 34B	BC096609|Ankrd34b|218440|ankyrin repeat domain 34B	BC119312|Ankrd34b|218440|ankyrin repeat domain 34B	BC119314|Ankrd34b|218440|ankyrin repeat domain 34B
mm9_v1_chr6_+_107479719_107479841	10.1488	GLI1..3.p2	AK139965|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK139355|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK164849|Lrrn1|16979|leucine rich repeat protein 1, neuronal	D45913|Lrrn1|16979|leucine rich repeat protein 1, neuronal	NM_008516|Lrrn1|16979|leucine rich repeat protein 1, neuronal	BC058701|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK160841|Lrrn1|16979|leucine rich repeat protein 1, neuronal
mm9_v1_chr2_-_25324650_25324661	10.1231	GLI1..3.p2	AK002382|Ptgds|19215|prostaglandin D2 synthase (brain)
mm9_v1_chr2_+_157387284_157387395	10.0688	GLI1..3.p2	AY644389|Nnat|18111|neuronatin
mm9_v1_chrX_-_70905062_70905211	10.0351	GLI1..3.p2	AK134665|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	AF181984|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	NM_012040|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase
mm9_v1_chr9_+_50560862_50561082	9.98751	GLI1..3.p2	NM_009964|Cryab|12955|crystallin, alpha B
mm9_v1_chr18_-_70301202_70301243	9.94555	GLI1..3.p2	AK045312|Rab27b|80718|RAB27b, member RAS oncogene family	AK086987|Rab27b|80718|RAB27b, member RAS oncogene family	AK049854|Rab27b|80718|RAB27b, member RAS oncogene family	NM_001082553|Rab27b|80718|RAB27b, member RAS oncogene family
mm9_v1_chr4_+_42929523_42929598	9.87692	GLI1..3.p2	AK122428|N28178|230085|expressed sequence N28178
mm9_v1_chr1_+_155747072_155747097	9.8318	GLI1..3.p2	AK137969|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK159106|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK160670|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AY044241|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	NM_008131|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK162685|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK168493|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	BC015086|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	X16314|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)
mm9_v1_chr15_-_94234778_94234782	9.8285	GLI1..3.p2	AK145288|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	NM_001164785|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	NM_001164786|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	NM_177431|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20
mm9_v1_chr1_+_75542840_75542910	9.80452	GLI1..3.p2	NM_009208|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3	BC080271|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3	M28383|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3
mm9_v1_chr2_+_106533615_106533705	9.77774	GLI1..3.p2	AK161666|Mpped2|77015|metallophosphoesterase domain containing 2	NM_001143683|Mpped2|77015|metallophosphoesterase domain containing 2	BC020182|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr6_+_124959207_124959358	9.76302	GLI1..3.p2	AK156026|Zfp384|269800|zinc finger protein 384	AK172476|Zfp384|269800|zinc finger protein 384
mm9_v1_chr4_-_154273134_154273221	9.71036	GLI1..3.p2	BC030453|2810405K02Rik|66469|RIKEN cDNA 2810405K02 gene	AK005188|2810405K02Rik|66469|RIKEN cDNA 2810405K02 gene	AK012999|2810405K02Rik|66469|RIKEN cDNA 2810405K02 gene	NM_025582|2810405K02Rik|66469|RIKEN cDNA 2810405K02 gene
mm9_v1_chrX_+_78316003_78316087	9.54681	GLI1..3.p2	AK031346|Tmem47|192216|transmembrane protein 47	AK076147|Tmem47|192216|transmembrane protein 47	AK162304|Tmem47|192216|transmembrane protein 47	AK133790|Tmem47|192216|transmembrane protein 47	AB041540|Tmem47|192216|transmembrane protein 47	AK030761|Tmem47|192216|transmembrane protein 47	BC019751|Tmem47|192216|transmembrane protein 47
mm9_v1_chr9_+_106366204_106366267	9.46507	GLI1..3.p2	
mm9_v1_chr4_-_58566362_58566472	9.42401	GLI1..3.p2	NM_010336|Lpar1|14745|lysophosphatidic acid receptor 1	U70622|Lpar1|14745|lysophosphatidic acid receptor 1
mm9_v1_chr7_-_125591493_125591732	9.34311	GLI1..3.p2	AK144560|Syt17|110058|synaptotagmin XVII	AK145293|Syt17|110058|synaptotagmin XVII
mm9_v1_chr17_+_27792587_27792658	9.24166	GLI1..3.p2	BC014698|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1	NM_011861|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1	X85124|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1
mm9_v1_chr5_+_130924661_130924722	9.21481	GLI1..3.p2	NM_021371|Caln1|140904|calneuron 1	AB041539|Caln1|140904|calneuron 1	BC057129|Caln1|140904|calneuron 1	BC058963|Caln1|140904|calneuron 1	AK158892|Caln1|140904|calneuron 1
mm9_v1_chr3_+_115710360_115710449	9.20347	GLI1..3.p2	NM_001163515|Extl2|58193|exostoses (multiple)-like 2	NM_021388|Extl2|58193|exostoses (multiple)-like 2	AK159281|Extl2|58193|exostoses (multiple)-like 2	AK028677|Extl2|58193|exostoses (multiple)-like 2	AK161866|Extl2|58193|exostoses (multiple)-like 2	BC031438|Extl2|58193|exostoses (multiple)-like 2
mm9_v1_chr2_+_164312023_164312078	9.00429	GLI1..3.p2	BC019947|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2	AY187289|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr11_+_101107726_101107744	8.93564	GLI1..3.p2	AK003810|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AF146523|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	BC051201|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	BC069992|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AJ250490|Ramp2|54409|receptor (calcitonin) activity modifying protein 2
mm9_v1_chr7_+_89319717_89319836	8.87345	GLI1..3.p2	NM_017400|Sh3gl3|20408|SH3-domain GRB2-like 3	AK012114|Sh3gl3|20408|SH3-domain GRB2-like 3	BC100453|Sh3gl3|20408|SH3-domain GRB2-like 3
mm9_v1_chr7_-_125587065_125587075	8.78048	GLI1..3.p2	AB069667|Syt17|110058|synaptotagmin XVII	NM_138649|Syt17|110058|synaptotagmin XVII
mm9_v1_chr2_+_90729768_90729873	8.76267	GLI1..3.p2	AK004340|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4
mm9_v1_chr6_+_41555460_41555790	8.6816	GLI1..3.p2	NM_001146351|Ephb6|13848|Eph receptor B6	NM_007680|Ephb6|13848|Eph receptor B6	AK087423|Ephb6|13848|Eph receptor B6	AK076442|Ephb6|13848|Eph receptor B6	L77867|Ephb6|13848|Eph receptor B6
mm9_v1_chr5_-_133018212_133018273	8.64664	GLI1..3.p2	BC096021|Auts2|319974|autism susceptibility candidate 2	NM_177047|Auts2|319974|autism susceptibility candidate 2	BC151031|Auts2|319974|autism susceptibility candidate 2	BC151047|Auts2|319974|autism susceptibility candidate 2	AK052418|Auts2|319974|autism susceptibility candidate 2
mm9_v1_chr4_-_86876328_86876443	8.56524	GLI1..3.p2	AK038800|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK136058|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	NM_172426|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr13_-_78338131_78338242	8.54094	GLI1..3.p2	BC108408|Nr2f1|13865|nuclear receptor subfamily 2, group F, member 1	X74134|Nr2f1|13865|nuclear receptor subfamily 2, group F, member 1	NM_010151|Nr2f1|13865|nuclear receptor subfamily 2, group F, member 1
mm9_v1_chr12_+_30687597_30687686	8.4015	GLI1..3.p2	BC037709|Pxdn|69675|peroxidasin homolog (Drosophila)
mm9_v1_chr11_-_4847968_4848115	8.3325	GLI1..3.p2	AK122388|Nefh|380684|neurofilament, heavy polypeptide	NM_010904|Nefh|380684|neurofilament, heavy polypeptide	M35131|Nefh|380684|neurofilament, heavy polypeptide
mm9_v1_chr7_+_53693190_53693196	8.30949	GLI1..3.p2	AK079373|Kcnc1|16502|potassium voltage gated channel, Shaw-related subfamily, member 1
mm9_v1_chrX_-_91787338_91787350	8.28017	GLI1..3.p2	AK220150|Maged1|94275|melanoma antigen, family D, 1	AK132248|Maged1|94275|melanoma antigen, family D, 1
mm9_v1_chr14_-_21613162_21613325	8.14145	GLI1..3.p2	AF395884|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK154764|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC025597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK078311|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC019162|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK081969|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK031213|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK054406|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039138|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039139|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_178597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma
mm9_v1_chr2_-_151458299_151458319	8.09496	GLI1..3.p2	AK047595|Snph|241727|syntaphilin	AK138230|Snph|241727|syntaphilin	AK047568|Snph|241727|syntaphilin
mm9_v1_chr3_+_7503409_7503519	8.06583	GLI1..3.p2	NM_173181|Fam164a|67306|family with sequence similarity 164, member A	BC087731|Fam164a|67306|family with sequence similarity 164, member A	AK083941|Fam164a|67306|family with sequence similarity 164, member A	AK170609|Fam164a|67306|family with sequence similarity 164, member A	AK085187|Fam164a|67306|family with sequence similarity 164, member A	AK014202|Fam164a|67306|family with sequence similarity 164, member A	BC044809|Fam164a|67306|family with sequence similarity 164, member A
mm9_v1_chr17_-_24826873_24826911	8.03776	GLI1..3.p2	AF117207|Syngr3|20974|synaptogyrin 3	AK081164|Syngr3|20974|synaptogyrin 3	NM_011522|Syngr3|20974|synaptogyrin 3
mm9_v1_chrX_+_78315963_78315999	8.0266	GLI1..3.p2	NM_138751|Tmem47|192216|transmembrane protein 47
mm9_v1_chr9_-_103125934_103125973	8.02144	GLI1..3.p2	BC018573|Trf|22041|transferrin
mm9_v1_chr2_-_53937785_53937964	8.01934	GLI1..3.p2	BC030065|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	AK014769|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	AB043586|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	AK010465|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	NM_023396|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate
mm9_v1_chr6_+_108163089_108163111	8.00953	GLI1..3.p2	AK047719|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	AK137477|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	NM_010585|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	X15373|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1
mm9_v1_chr2_+_169459145_169459258	7.98196	GLI1..3.p2	NM_080455|Tshz2|228911|teashirt zinc finger family member 2	BC079550|Tshz2|228911|teashirt zinc finger family member 2
mm9_v1_chr6_+_117961386_117961396	7.97673	GLI1..3.p2	AK158756|Rasgef1a|70727|RasGEF domain family, member 1A
mm9_v1_chr14_+_70930768_70930822	7.96899	GLI1..3.p2	BC055315|Lgi3|213469|leucine-rich repeat LGI family, member 3	BC061460|Lgi3|213469|leucine-rich repeat LGI family, member 3
mm9_v1_chr2_-_91771919_91771949	7.96281	GLI1..3.p2	AK032742|Mdk|17242|midkine	AK084457|Mdk|17242|midkine	NM_001012336|Mdk|17242|midkine
mm9_v1_chr14_+_70930491_70930682	7.95901	GLI1..3.p2	AK087125|Lgi3|213469|leucine-rich repeat LGI family, member 3	NM_145219|Lgi3|213469|leucine-rich repeat LGI family, member 3	AK132296|Lgi3|213469|leucine-rich repeat LGI family, member 3	AF515590|Lgi3|213469|leucine-rich repeat LGI family, member 3	AY174077|Lgi3|213469|leucine-rich repeat LGI family, member 3	AK049831|Lgi3|213469|leucine-rich repeat LGI family, member 3	AK163664|Lgi3|213469|leucine-rich repeat LGI family, member 3	AK047495|Lgi3|213469|leucine-rich repeat LGI family, member 3
mm9_v1_chr9_+_43892984_43893007	7.92551	GLI1..3.p2	NM_198091|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr2_-_91771836_91771855	7.83027	GLI1..3.p2	M19662|Mdk|17242|midkine	NM_001012335|Mdk|17242|midkine
mm9_v1_chr2_-_91771882_91771894	7.77402	GLI1..3.p2	M34327|Mdk|17242|midkine	M35833|Mdk|17242|midkine
mm9_v1_chr3_+_90341208_90341304	7.70449	GLI1..3.p2	AK160178|S100a16|67860|S100 calcium binding protein A16	AK009762|S100a16|67860|S100 calcium binding protein A16	AK160512|S100a16|67860|S100 calcium binding protein A16	AK167006|S100a16|67860|S100 calcium binding protein A16
mm9_v1_chrX_-_91787317_91787335	7.70244	GLI1..3.p2	BC016438|Maged1|94275|melanoma antigen, family D, 1	AK017275|Maged1|94275|melanoma antigen, family D, 1	AK145872|Maged1|94275|melanoma antigen, family D, 1
mm9_v1_chr7_+_31844947_31844953	7.70197	GLI1..3.p2	AJ487521|Lgi4|243914|leucine-rich repeat LGI family, member 4	AJ487960|Lgi4|243914|leucine-rich repeat LGI family, member 4	NM_144556|Lgi4|243914|leucine-rich repeat LGI family, member 4
mm9_v1_chr5_+_34064954_34065046	7.64998	GLI1..3.p2	NM_001163216|Fgfr3|14184|fibroblast growth factor receptor 3	NM_001163217|Fgfr3|14184|fibroblast growth factor receptor 3	S56291|Fgfr3|14184|fibroblast growth factor receptor 3	AF024638|Fgfr3|14184|fibroblast growth factor receptor 3
mm9_v1_chr6_+_30688050_30688066	7.62826	GLI1..3.p2	AK031718|Mest|17294|mesoderm specific transcript	AK032881|Mest|17294|mesoderm specific transcript	AK034949|Mest|17294|mesoderm specific transcript	AK146457|Mest|17294|mesoderm specific transcript	AK168714|Mest|17294|mesoderm specific transcript	AK168732|Mest|17294|mesoderm specific transcript	AK168743|Mest|17294|mesoderm specific transcript	AK168995|Mest|17294|mesoderm specific transcript	AK169095|Mest|17294|mesoderm specific transcript	AK169266|Mest|17294|mesoderm specific transcript	D16262|Mest|17294|mesoderm specific transcript	NM_008590|Mest|17294|mesoderm specific transcript	BC006639|Mest|17294|mesoderm specific transcript
mm9_v1_chr11_-_119903061_119903095	7.52111	GLI1..3.p2	AF011908|Aatk|11302|apoptosis-associated tyrosine kinase	AK155100|Aatk|11302|apoptosis-associated tyrosine kinase	NM_001198787|Aatk|11302|apoptosis-associated tyrosine kinase	AK036705|Aatk|11302|apoptosis-associated tyrosine kinase
mm9_v1_chr1_-_166387998_166388161	7.45065	GLI1..3.p2	X16646|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	BC094070|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	BC027319|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK005071|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK140862|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK160405|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK161891|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr17_+_27792487_27792562	7.43323	GLI1..3.p2	AK158686|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1
mm9_v1_chr1_+_154802144_154802177	7.41299	GLI1..3.p2	AK129155|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr2_-_92274110_92274239	7.4041	GLI1..3.p2	AB003433|Cry2|12953|cryptochrome 2 (photolyase-like)	AK172994|Cry2|12953|cryptochrome 2 (photolyase-like)	BC054794|Cry2|12953|cryptochrome 2 (photolyase-like)	BC066799|Cry2|12953|cryptochrome 2 (photolyase-like)	AK037778|Cry2|12953|cryptochrome 2 (photolyase-like)	AK041696|Cry2|12953|cryptochrome 2 (photolyase-like)	AF156987|Cry2|12953|cryptochrome 2 (photolyase-like)	AK133781|Cry2|12953|cryptochrome 2 (photolyase-like)	NM_001113333|Cry2|12953|cryptochrome 2 (photolyase-like)	NM_009963|Cry2|12953|cryptochrome 2 (photolyase-like)	AK051524|Cry2|12953|cryptochrome 2 (photolyase-like)
mm9_v1_chr18_+_40416615_40416659	7.40024	GLI1..3.p2	AK013700|2900055J20Rik|73001|RIKEN cDNA 2900055J20 gene
mm9_v1_chrX_-_91787353_91787369	7.32685	GLI1..3.p2	AK135452|Maged1|94275|melanoma antigen, family D, 1	AK146867|Maged1|94275|melanoma antigen, family D, 1	AK146908|Maged1|94275|melanoma antigen, family D, 1	AK049660|Maged1|94275|melanoma antigen, family D, 1	AK087937|Maged1|94275|melanoma antigen, family D, 1
mm9_v1_chr15_-_95359136_95359208	7.30582	GLI1..3.p2	NM_016743|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr7_+_52960585_52960678	7.18351	GLI1..3.p2	NM_016974|Dbp|13170|D site albumin promoter binding protein	BC084676|Dbp|13170|D site albumin promoter binding protein	BC018323|Dbp|13170|D site albumin promoter binding protein
mm9_v1_chr3_+_45182311_45182350	7.16731	GLI1..3.p2	BC037259|Pcdh10|18526|protocadherin 10	NM_001098170|Pcdh10|18526|protocadherin 10	NM_001098171|Pcdh10|18526|protocadherin 10	NM_001098172|Pcdh10|18526|protocadherin 10	NM_011043|Pcdh10|18526|protocadherin 10	AK081621|Pcdh10|18526|protocadherin 10	AK081977|Pcdh10|18526|protocadherin 10	BC026712|Pcdh10|18526|protocadherin 10	AK122503|Pcdh10|18526|protocadherin 10
mm9_v1_chr6_-_88824037_88824037	7.15731	GLI1..3.p2	BC033384|Podxl2|319655|podocalyxin-like 2	NM_176973|Podxl2|319655|podocalyxin-like 2
mm9_v1_chr7_-_6683113_6683136	7.05962	GLI1..3.p2	BC085183|Peg3|18616|paternally expressed 3	BC072661|Peg3|18616|paternally expressed 3	AB003040|Peg3|18616|paternally expressed 3	AK044602|Peg3|18616|paternally expressed 3	AK053523|Peg3|18616|paternally expressed 3	AK141217|Peg3|18616|paternally expressed 3	NM_008817|Peg3|18616|paternally expressed 3	AK163845|Peg3|18616|paternally expressed 3
mm9_v1_chr3_+_62142698_62142868	6.99945	GLI1..3.p2	NM_001081295|Arhgef26|622434|Rho guanine nucleotide exchange factor (GEF) 26
mm9_v1_chr7_+_64846558_64846592	6.97847	GLI1..3.p2	U14420|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	AK039070|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	AK147247|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm9_v1_chr5_-_8622882_8622951	6.97486	GLI1..3.p2	BC058808|Rundc3b|242819|RUN domain containing 3B	NM_198620|Rundc3b|242819|RUN domain containing 3B
mm9_v1_chr7_+_134094045_134094242	6.91094	GLI1..3.p2	AK034088|Sez6l2|233878|seizure related 6 homolog like 2	AK165738|Sez6l2|233878|seizure related 6 homolog like 2	BC096615|Sez6l2|233878|seizure related 6 homolog like 2	BC011475|Sez6l2|233878|seizure related 6 homolog like 2	NM_144926|Sez6l2|233878|seizure related 6 homolog like 2
mm9_v1_chr7_-_126127713_126127734	6.74696	GLI1..3.p2	AB030197|Gprc5b|64297|G protein-coupled receptor, family C, group 5, member B
mm9_v1_chr14_+_60997104_60997126	6.67649	GLI1..3.p2	NM_001164705|Fam123a|72125|family with sequence similarity 123, member A	NM_028113|Fam123a|72125|family with sequence similarity 123, member A
mm9_v1_chr13_-_92901406_92901450	6.6703	GLI1..3.p2	NM_009027|Rasgrf2|19418|RAS protein-specific guanine nucleotide-releasing factor 2	U67326|Rasgrf2|19418|RAS protein-specific guanine nucleotide-releasing factor 2
mm9_v1_chr17_-_25036364_25036398	6.62181	GLI1..3.p2	BC004003|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3
mm9_v1_chr6_-_115201866_115201882	6.59975	GLI1..3.p2	AK079347|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK140367|Timp4|110595|tissue inhibitor of metalloproteinase 4	NM_080639|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr7_+_52960702_52960765	6.58564	GLI1..3.p2	AK140243|Dbp|13170|D site albumin promoter binding protein
mm9_v1_chrX_-_91787351_91787352	6.57943	GLI1..3.p2	BC031461|Maged1|94275|melanoma antigen, family D, 1
mm9_v1_chr17_+_25707771_25707860	6.57162	GLI1..3.p2	AK079380|2810468N07Rik|72834|RIKEN cDNA 2810468N07 gene
mm9_v1_chr4_+_117507993_117508058	6.56044	GLI1..3.p2	BC021828|Slc6a9|14664|solute carrier family 6 (neurotransmitter transporter, glycine), member 9
mm9_v1_chr5_-_118694869_118695124	6.48838	GLI1..3.p2	AK046850|Rnft2|269695|ring finger protein, transmembrane 2	NM_172998|Rnft2|269695|ring finger protein, transmembrane 2	BC057302|Rnft2|269695|ring finger protein, transmembrane 2	AK148930|Rnft2|269695|ring finger protein, transmembrane 2	NM_001109902|Rnft2|269695|ring finger protein, transmembrane 2	AK090256|Rnft2|269695|ring finger protein, transmembrane 2
mm9_v1_chr1_+_12682510_12682540	6.47031	GLI1..3.p2	NM_001198565|Sulf1|240725|sulfatase 1	NM_001198566|Sulf1|240725|sulfatase 1	AK078756|Sulf1|240725|sulfatase 1
mm9_v1_chr2_+_164312087_164312169	6.47009	GLI1..3.p2	AK013571|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr1_-_95532227_95532238	6.45969	GLI1..3.p2	BC052913|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr7_-_25857275_25857387	6.44893	GLI1..3.p2	BC052009|Grik5|14809|glutamate receptor, ionotropic, kainate 5 (gamma 2)	BC110682|Grik5|14809|glutamate receptor, ionotropic, kainate 5 (gamma 2)	D10011|Grik5|14809|glutamate receptor, ionotropic, kainate 5 (gamma 2)	NM_008168|Grik5|14809|glutamate receptor, ionotropic, kainate 5 (gamma 2)
mm9_v1_chr9_+_108192759_108192800	6.43884	GLI1..3.p2	AK013602|Nicn1|66257|nicolin 1	AK075732|Nicn1|66257|nicolin 1	AK146890|Nicn1|66257|nicolin 1	AK169135|Nicn1|66257|nicolin 1	AK002789|Nicn1|66257|nicolin 1	BC024050|Nicn1|66257|nicolin 1	NM_025449|Nicn1|66257|nicolin 1	AJ299741|Nicn1|66257|nicolin 1
mm9_v1_chr2_-_151458256_151458277	6.38068	GLI1..3.p2	AK032279|Snph|241727|syntaphilin	AK122262|Snph|241727|syntaphilin	NM_198214|Snph|241727|syntaphilin
mm9_v1_chr1_-_95532270_95532276	6.35544	GLI1..3.p2	AK148041|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr1_-_95532192_95532205	6.32239	GLI1..3.p2	BC029875|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr11_-_78059124_78059213	6.31485	GLI1..3.p2	BC072657|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)	AK170533|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)	U40375|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)	NM_009297|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)
mm9_v1_chr9_-_45714487_45714524	6.30511	GLI1..3.p2	AK032376|Rnf214|235315|ring finger protein 214
mm9_v1_chr14_-_37911383_37911496	6.16809	GLI1..3.p2	AF426393|Cdhr1|170677|cadherin-related family member 1	BC042454|Cdhr1|170677|cadherin-related family member 1	AK143151|Cdhr1|170677|cadherin-related family member 1	BC058270|Cdhr1|170677|cadherin-related family member 1	NM_130878|Cdhr1|170677|cadherin-related family member 1
mm9_v1_chrX_+_97963061_97963090	6.14652	GLI1..3.p2	AK122474|Dlg3|53310|discs, large homolog 3 (Drosophila)	NM_001177778|Dlg3|53310|discs, large homolog 3 (Drosophila)	BC094368|Dlg3|53310|discs, large homolog 3 (Drosophila)	NM_016747|Dlg3|53310|discs, large homolog 3 (Drosophila)	D87117|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr17_-_24826812_24826871	6.14433	GLI1..3.p2	AK048753|Syngr3|20974|synaptogyrin 3	AK082167|Syngr3|20974|synaptogyrin 3	BC025022|Syngr3|20974|synaptogyrin 3	AK080129|Syngr3|20974|synaptogyrin 3	AK087538|Syngr3|20974|synaptogyrin 3
mm9_v1_chr2_+_164312376_164312376	6.10096	GLI1..3.p2	AK003735|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2	NM_001048228|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr9_-_83699706_83699913	6.09807	GLI1..3.p2	AF277093|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	AK029065|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	BC037030|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	NM_001145974|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	AK030666|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	NM_148941|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4
mm9_v1_chr1_-_95532242_95532249	6.08267	GLI1..3.p2	AK152917|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr4_-_128798939_128798983	6.08223	GLI1..3.p2	NM_001130419|Hpca|15444|hippocalcin
mm9_v1_chr9_+_120213190_120213236	6.06817	GLI1..3.p2	AK083225|Myrip|245049|myosin VIIA and Rab interacting protein	NM_144557|Myrip|245049|myosin VIIA and Rab interacting protein	AK038988|Myrip|245049|myosin VIIA and Rab interacting protein
mm9_v1_chr9_+_69137659_69137691	6.06263	GLI1..3.p2	Z82994|Rora|19883|RAR-related orphan receptor alpha
mm9_v1_chr8_+_121970569_121970618	6.00665	GLI1..3.p2	AF411253|Necab2|117148|N-terminal EF-hand calcium binding protein 2	NM_054095|Necab2|117148|N-terminal EF-hand calcium binding protein 2
mm9_v1_chr17_+_25864702_25864739	6.00631	GLI1..3.p2	BC018186|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1
mm9_v1_chr18_+_37303622_37303622	5.99905	GLI1..3.p2	AY013769|Pcdhac2|353237|protocadherin alpha subfamily C, 2	NM_001003672|Pcdhac2|353237|protocadherin alpha subfamily C, 2
mm9_v1_chr9_+_110148568_110148708	5.99418	GLI1..3.p2	AF461091|Cspg5|29873|chondroitin sulfate proteoglycan 5
mm9_v1_chr15_-_75397243_75397344	5.9736	GLI1..3.p2	AF127091|Ly6h|23934|lymphocyte antigen 6 complex, locus H	BC028758|Ly6h|23934|lymphocyte antigen 6 complex, locus H	NM_001135688|Ly6h|23934|lymphocyte antigen 6 complex, locus H	AK021002|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr1_+_154802198_154802230	5.95891	GLI1..3.p2	BC089007|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2	NM_175460|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr1_-_95531961_95532109	5.87614	GLI1..3.p2	AF004934|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr7_-_149558139_149558173	5.87607	GLI1..3.p2	BC049666|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	AK045822|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	AK163573|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	NM_177265|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	AK031961|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene
mm9_v1_chr9_-_79641131_79641161	5.86246	GLI1..3.p2	AK150071|Tmem30a|69981|transmembrane protein 30A	AK170171|Tmem30a|69981|transmembrane protein 30A	AK170697|Tmem30a|69981|transmembrane protein 30A	AK159364|Tmem30a|69981|transmembrane protein 30A
mm9_v1_chr1_-_95532278_95532320	5.84282	GLI1..3.p2	BC071218|Stk25|59041|serine/threonine kinase 25 (yeast)	NM_021537|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr4_-_128798481_128798555	5.81481	GLI1..3.p2	BC049607|Hpca|15444|hippocalcin	NM_010471|Hpca|15444|hippocalcin	AK002992|Hpca|15444|hippocalcin
mm9_v1_chr9_-_103118185_103118198	5.80813	GLI1..3.p2	M23016|Trf|22041|transferrin
mm9_v1_chr11_+_115281434_115281480	5.80405	GLI1..3.p2	NM_183285|Kctd2|70382|potassium channel tetramerisation domain containing 2	AK009318|Kctd2|70382|potassium channel tetramerisation domain containing 2	AK046534|Kctd2|70382|potassium channel tetramerisation domain containing 2	BC095988|Kctd2|70382|potassium channel tetramerisation domain containing 2
mm9_v1_chr9_-_108363229_108363406	5.78701	GLI1..3.p2	AK157991|Klhdc8b|78267|kelch domain containing 8B	AK087143|Klhdc8b|78267|kelch domain containing 8B	AK154428|Klhdc8b|78267|kelch domain containing 8B
mm9_v1_chr8_+_121970660_121970680	5.73344	GLI1..3.p2	BC107384|Necab2|117148|N-terminal EF-hand calcium binding protein 2	BC107385|Necab2|117148|N-terminal EF-hand calcium binding protein 2	BC115857|Necab2|117148|N-terminal EF-hand calcium binding protein 2	BC115963|Necab2|117148|N-terminal EF-hand calcium binding protein 2
mm9_v1_chr15_-_37721754_37721786	5.71753	GLI1..3.p2	NM_001170866|Ncald|52589|neurocalcin delta
mm9_v1_chr6_-_120772651_120772678	5.70457	GLI1..3.p2	AK189499|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK186366|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK189578|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK167644|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1
mm9_v1_chr2_-_168567436_168567596	5.69252	GLI1..3.p2	AF152243|Atp9a|11981|ATPase, class II, type 9A
mm9_v1_chr15_-_95358578_95358610	5.64675	GLI1..3.p2	AK048913|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr13_+_54472806_54472829	5.63926	GLI1..3.p2	BC058395|Cplx2|12890|complexin 2
mm9_v1_chr10_-_126700105_126700237	5.62171	GLI1..3.p2	AF067179|Kif5a|16572|kinesin family member 5A	AK147660|Kif5a|16572|kinesin family member 5A	BC058396|Kif5a|16572|kinesin family member 5A	AK147707|Kif5a|16572|kinesin family member 5A	BC027115|Kif5a|16572|kinesin family member 5A	AK147352|Kif5a|16572|kinesin family member 5A
mm9_v1_chr11_-_120051109_120051205	5.6072	GLI1..3.p2	AK013071|2810410L24Rik|100042332|RIKEN cDNA 2810410L24 gene	AK164256|2810410L24Rik|100042332|RIKEN cDNA 2810410L24 gene	AK162474|2810410L24Rik|100042332|RIKEN cDNA 2810410L24 gene
mm9_v1_chr6_-_120772683_120772817	5.59966	GLI1..3.p2	BC003421|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	NM_007510|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AB074758|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK146162|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK169854|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK010603|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK139791|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK149356|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1
mm9_v1_chr5_-_84846256_84846332	5.58815	GLI1..3.p2	AK089143|Epha5|13839|Eph receptor A5
mm9_v1_chr9_-_108480927_108481054	5.56643	GLI1..3.p2	BC054367|Wdr6|83669|WD repeat domain 6	AK163752|Wdr6|83669|WD repeat domain 6	AK052235|Wdr6|83669|WD repeat domain 6	AK146617|Wdr6|83669|WD repeat domain 6	AK165935|Wdr6|83669|WD repeat domain 6	AK046119|Wdr6|83669|WD repeat domain 6	AK037181|Wdr6|83669|WD repeat domain 6	AK166265|Wdr6|83669|WD repeat domain 6	AF348591|Wdr6|83669|WD repeat domain 6	BC050894|Wdr6|83669|WD repeat domain 6	NM_031392|Wdr6|83669|WD repeat domain 6	AK169357|Wdr6|83669|WD repeat domain 6
mm9_v1_chr8_+_121971001_121971009	5.54305	GLI1..3.p2	AK082727|Necab2|117148|N-terminal EF-hand calcium binding protein 2
mm9_v1_chr18_+_13130739_13130831	5.52696	GLI1..3.p2	D87973|Impact|16210|imprinted and ancient	NM_008378|Impact|16210|imprinted and ancient	AK138136|Impact|16210|imprinted and ancient	BC020524|Impact|16210|imprinted and ancient
mm9_v1_chr19_+_8738494_8738608	5.51443	GLI1..3.p2	AK138282|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	NM_001112697|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	NM_007698|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	BC094242|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	AJ006521|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS
mm9_v1_chr11_-_80966253_80966404	5.49273	GLI1..3.p2	BC138530|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	BC138529|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	BC038551|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	NM_007384|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	Y14634|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)
mm9_v1_chr5_+_34064372_34064491	5.49045	GLI1..3.p2	NM_008010|Fgfr3|14184|fibroblast growth factor receptor 3	NM_001163215|Fgfr3|14184|fibroblast growth factor receptor 3	AK143592|Fgfr3|14184|fibroblast growth factor receptor 3	BC053056|Fgfr3|14184|fibroblast growth factor receptor 3	M81342|Fgfr3|14184|fibroblast growth factor receptor 3	X58255|Fgfr3|14184|fibroblast growth factor receptor 3
mm9_v1_chr15_-_98637560_98637620	5.44995	GLI1..3.p2	AK164154|Ddn|13199|dendrin
mm9_v1_chr1_+_134776927_134777014	5.44937	GLI1..3.p2	AK036271|Lrrn2|16980|leucine rich repeat protein 2, neuronal	AK039216|Lrrn2|16980|leucine rich repeat protein 2, neuronal	NM_010732|Lrrn2|16980|leucine rich repeat protein 2, neuronal
mm9_v1_chr7_+_137720997_137721002	5.43003	GLI1..3.p2	AY177410|Tacc2|57752|transforming, acidic coiled-coil containing protein 2	NM_001004468|Tacc2|57752|transforming, acidic coiled-coil containing protein 2	NM_206856|Tacc2|57752|transforming, acidic coiled-coil containing protein 2	BC109016|Tacc2|57752|transforming, acidic coiled-coil containing protein 2
mm9_v1_chr9_+_98325217_98325252	5.42994	GLI1..3.p2	AK011641|Rbp1|19659|retinol binding protein 1, cellular	BC091751|Rbp1|19659|retinol binding protein 1, cellular	BC018254|Rbp1|19659|retinol binding protein 1, cellular
mm9_v1_chr6_-_115201846_115201865	5.4146	GLI1..3.p2	BC064046|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK038820|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK040814|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr11_-_69419419_69419489	5.4071	GLI1..3.p2	BC058763|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide	BC034586|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide	AK158321|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide	AK141786|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide	NM_013415|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide
mm9_v1_chr9_-_79641213_79641236	5.39189	GLI1..3.p2	AK077065|Tmem30a|69981|transmembrane protein 30A	NM_133718|Tmem30a|69981|transmembrane protein 30A
mm9_v1_chr4_-_151235861_151235879	5.39182	GLI1..3.p2	AK158710|Camta1|100072|calmodulin binding transcription activator 1	NM_001081557|Camta1|100072|calmodulin binding transcription activator 1	NM_001195565|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr2_-_148700920_148700989	5.38861	GLI1..3.p2	AK212642|Cst3|13010|cystatin C
mm9_v1_chr5_+_121098830_121098830	5.38632	GLI1..3.p2	BC005418|Rasal1|19415|RAS protein activator like 1 (GAP1 like)	NM_013832|Rasal1|19415|RAS protein activator like 1 (GAP1 like)
mm9_v1_chr18_+_61204953_61205094	5.32277	GLI1..3.p2	X04367|Pdgfrb|18596|platelet derived growth factor receptor, beta polypeptide
mm9_v1_chr14_+_60997156_60997209	5.30533	GLI1..3.p2	BC056350|Fam123a|72125|family with sequence similarity 123, member A	AK139177|Fam123a|72125|family with sequence similarity 123, member A	AK032651|Fam123a|72125|family with sequence similarity 123, member A	AK011185|Fam123a|72125|family with sequence similarity 123, member A
mm9_v1_chr18_-_36838775_36838784	5.2835	GLI1..3.p2	BC024136|Apbb3|225372|amyloid beta (A4) precursor protein-binding, family B, member 3
mm9_v1_chr9_-_54349409_54349432	5.26552	GLI1..3.p2	AK170274|Dmxl2|235380|Dmx-like 2	AK048831|Dmxl2|235380|Dmx-like 2	AK053672|Dmxl2|235380|Dmx-like 2	NM_172771|Dmxl2|235380|Dmx-like 2
mm9_v1_chr3_+_55265811_55265928	5.26387	GLI1..3.p2	AF155821|Dclk1|13175|doublecortin-like kinase 1	AK032424|Dclk1|13175|doublecortin-like kinase 1	AK081200|Dclk1|13175|doublecortin-like kinase 1	AB073969|Dclk1|13175|doublecortin-like kinase 1	AK047716|Dclk1|13175|doublecortin-like kinase 1	AY968047|Dclk1|13175|doublecortin-like kinase 1	AY968048|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr19_-_45890238_45890540	5.25175	GLI1..3.p2	AJ278536|Kcnip2|80906|Kv channel-interacting protein 2	AJ278537|Kcnip2|80906|Kv channel-interacting protein 2	AF439339|Kcnip2|80906|Kv channel-interacting protein 2	AF439340|Kcnip2|80906|Kv channel-interacting protein 2	AF439341|Kcnip2|80906|Kv channel-interacting protein 2	DQ148496|Kcnip2|80906|Kv channel-interacting protein 2	DQ148497|Kcnip2|80906|Kv channel-interacting protein 2	DQ148498|Kcnip2|80906|Kv channel-interacting protein 2	NM_030716|Kcnip2|80906|Kv channel-interacting protein 2	NM_145703|Kcnip2|80906|Kv channel-interacting protein 2	NM_145704|Kcnip2|80906|Kv channel-interacting protein 2	BC132215|Kcnip2|80906|Kv channel-interacting protein 2	BC138496|Kcnip2|80906|Kv channel-interacting protein 2	BC056434|Kcnip2|80906|Kv channel-interacting protein 2
mm9_v1_chr3_+_96400524_96400617	5.23824	GLI1..3.p2	NM_001024851|Ankrd34a|545554|ankyrin repeat domain 34A	BC052924|Ankrd34a|545554|ankyrin repeat domain 34A
mm9_v1_chr4_+_55093796_55093934	5.23195	GLI1..3.p2	AK035041|Zfp462|242466|zinc finger protein 462
mm9_v1_chr2_+_71819264_71819343	5.20453	GLI1..3.p2	AK220281|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AB021132|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AK161934|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AK017479|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AF115480|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	BC139822|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	NM_019688|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4
mm9_v1_chr18_-_43532846_43532925	5.19467	GLI1..3.p2	AK161509|Dpysl3|22240|dihydropyrimidinase-like 3	AK077000|Dpysl3|22240|dihydropyrimidinase-like 3	AK133040|Dpysl3|22240|dihydropyrimidinase-like 3	NM_001136086|Dpysl3|22240|dihydropyrimidinase-like 3
mm9_v1_chr17_+_25864655_25864695	5.18899	GLI1..3.p2	AK009926|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1	AK049334|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1	NM_028009|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1
mm9_v1_chr16_-_20241392_20241432	5.17423	GLI1..3.p2	AK079603|Map6d1|208158|MAP6 domain containing 1	BC116220|Map6d1|208158|MAP6 domain containing 1	BC116221|Map6d1|208158|MAP6 domain containing 1	AK163656|Map6d1|208158|MAP6 domain containing 1	NM_198599|Map6d1|208158|MAP6 domain containing 1
mm9_v1_chr1_+_164569335_164569367	5.14625	GLI1..3.p2	BC125329|Myoc|17926|myocilin	BC137606|Myoc|17926|myocilin
mm9_v1_chr9_-_56008770_56008818	5.10669	GLI1..3.p2	AK159914|Tspan3|56434|tetraspanin 3
mm9_v1_chr4_-_91066674_91066674	5.08494	GLI1..3.p2	BC049125|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	BC058393|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207685|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr12_+_45429894_45429900	5.08084	GLI1..3.p2	AK048567|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule
mm9_v1_chr13_-_54712629_54712744	5.01571	GLI1..3.p2	AK029382|Cltb|74325|clathrin, light polypeptide (Lcb)	NM_028870|Cltb|74325|clathrin, light polypeptide (Lcb)	BC070404|Cltb|74325|clathrin, light polypeptide (Lcb)	AK045989|Cltb|74325|clathrin, light polypeptide (Lcb)	AK159480|Cltb|74325|clathrin, light polypeptide (Lcb)	AK167531|Cltb|74325|clathrin, light polypeptide (Lcb)	AK146816|Cltb|74325|clathrin, light polypeptide (Lcb)
mm9_v1_chr8_-_37631772_37631789	4.97928	GLI1..3.p2	BC048730|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chrX_+_132373572_132373652	4.97911	GLI1..3.p2	NM_001163015|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	NM_001163016|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	NM_001163017|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	AK030638|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	AK081764|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	BC117924|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	BC117923|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2
mm9_v1_chr9_-_56008595_56008764	4.93672	GLI1..3.p2	AK089494|Tspan3|56434|tetraspanin 3	AK154919|Tspan3|56434|tetraspanin 3	AB009021|Tspan3|56434|tetraspanin 3	AF133427|Tspan3|56434|tetraspanin 3	AB072450|Tspan3|56434|tetraspanin 3	AK053325|Tspan3|56434|tetraspanin 3	AK141951|Tspan3|56434|tetraspanin 3	AK006798|Tspan3|56434|tetraspanin 3	AK152175|Tspan3|56434|tetraspanin 3
mm9_v1_chr9_-_103118228_103118262	4.935	GLI1..3.p2	AK203903|Trf|22041|transferrin
mm9_v1_chr16_-_20621287_20621552	4.93443	GLI1..3.p2	AK013788|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147550|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147736|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147745|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC157896|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	NM_028420|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2
mm9_v1_chr11_+_80114320_80114577	4.90191	GLI1..3.p2	AJ313479|Rhbdl3|246104|rhomboid, veinlet-like 3 (Drosophila)	NM_139228|Rhbdl3|246104|rhomboid, veinlet-like 3 (Drosophila)	BC054784|Rhbdl3|246104|rhomboid, veinlet-like 3 (Drosophila)	BC056969|Rhbdl3|246104|rhomboid, veinlet-like 3 (Drosophila)
mm9_v1_chr19_+_27291897_27291921	4.8399	GLI1..3.p2	U06670|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr18_-_25637786_25637794	4.8397	GLI1..3.p2	AK078071|Celf4|108013|CUGBP, Elav-like family member 4
mm9_v1_chr3_+_124023954_124024027	4.82835	GLI1..3.p2	NM_146140|Tram1l1|229801|translocation associated membrane protein 1-like 1	AK052946|Tram1l1|229801|translocation associated membrane protein 1-like 1	AK048118|Tram1l1|229801|translocation associated membrane protein 1-like 1	AK083053|Tram1l1|229801|translocation associated membrane protein 1-like 1	AK044115|Tram1l1|229801|translocation associated membrane protein 1-like 1	BC024829|Tram1l1|229801|translocation associated membrane protein 1-like 1	BC027120|Tram1l1|229801|translocation associated membrane protein 1-like 1
mm9_v1_chr3_+_133899454_133899460	4.77923	GLI1..3.p2	BC065149|Cxxc4|319478|CXXC finger 4
mm9_v1_chr15_-_95358674_95358735	4.77666	GLI1..3.p2	U59230|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr2_+_90730089_90730144	4.75256	GLI1..3.p2	AK029777|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4
mm9_v1_chr5_+_108797254_108797392	4.75093	GLI1..3.p2	AK165889|Gm10419|100038441|predicted gene 10419
mm9_v1_chr13_+_42961598_42961632	4.73676	GLI1..3.p2	AK139452|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr11_-_64976408_64976473	4.73165	GLI1..3.p2	BC056366|Arhgap44|216831|Rho GTPase activating protein 44	BC059911|Arhgap44|216831|Rho GTPase activating protein 44	NM_001099288|Arhgap44|216831|Rho GTPase activating protein 44	NM_175003|Arhgap44|216831|Rho GTPase activating protein 44
mm9_v1_chr9_+_21397165_21397375	4.73095	GLI1..3.p2	BC057071|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	NM_178619|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	AK030602|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	AK028799|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene
mm9_v1_chrX_-_91787372_91787452	4.71125	GLI1..3.p2	AB029448|Maged1|94275|melanoma antigen, family D, 1	NM_019791|Maged1|94275|melanoma antigen, family D, 1
mm9_v1_chr12_+_3365102_3365131	4.69042	GLI1..3.p2	AK220283|Kif3c|16570|kinesin family member 3C	NM_008445|Kif3c|16570|kinesin family member 3C
mm9_v1_chr1_-_25886551_25886551	4.65999	GLI1..3.p2	BC099951|Bai3|210933|brain-specific angiogenesis inhibitor 3	NM_175642|Bai3|210933|brain-specific angiogenesis inhibitor 3
mm9_v1_chr7_-_63274920_63274958	4.65492	GLI1..3.p2	AK166325|Nipa1|233280|non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	AY098645|Nipa1|233280|non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	BC055828|Nipa1|233280|non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	NM_153578|Nipa1|233280|non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	AK046619|Nipa1|233280|non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)
mm9_v1_chr2_+_135885126_135885166	4.64306	GLI1..3.p2	AK014127|6330527O06Rik|76161|RIKEN cDNA 6330527O06 gene
mm9_v1_chr7_-_117129702_117129846	4.61963	GLI1..3.p2	AK038953|Tmem41b|233724|transmembrane protein 41B	AK165226|Tmem41b|233724|transmembrane protein 41B	AK075726|Tmem41b|233724|transmembrane protein 41B	AK029327|Tmem41b|233724|transmembrane protein 41B	AK053588|Tmem41b|233724|transmembrane protein 41B	AK078357|Tmem41b|233724|transmembrane protein 41B	AK090100|Tmem41b|233724|transmembrane protein 41B	AK139961|Tmem41b|233724|transmembrane protein 41B	AK166427|Tmem41b|233724|transmembrane protein 41B	AK166455|Tmem41b|233724|transmembrane protein 41B	NM_153525|Tmem41b|233724|transmembrane protein 41B	BC027103|Tmem41b|233724|transmembrane protein 41B	AK172876|Tmem41b|233724|transmembrane protein 41B	BC026515|Tmem41b|233724|transmembrane protein 41B	AK033997|Tmem41b|233724|transmembrane protein 41B	AK035266|Tmem41b|233724|transmembrane protein 41B	AK162557|Tmem41b|233724|transmembrane protein 41B	AK150353|Tmem41b|233724|transmembrane protein 41B	AK153048|Tmem41b|233724|transmembrane protein 41B
mm9_v1_chr5_+_91946651_91946764	4.61929	GLI1..3.p2	AK148300|Parm1|231440|prostate androgen-regulated mucin-like protein 1	AK078943|Parm1|231440|prostate androgen-regulated mucin-like protein 1	BC006604|Parm1|231440|prostate androgen-regulated mucin-like protein 1	NM_145562|Parm1|231440|prostate androgen-regulated mucin-like protein 1	AK167402|Parm1|231440|prostate androgen-regulated mucin-like protein 1	AK161172|Parm1|231440|prostate androgen-regulated mucin-like protein 1	AK078862|Parm1|231440|prostate androgen-regulated mucin-like protein 1
mm9_v1_chr17_+_43705388_43705482	4.61172	GLI1..3.p2	AK051454|Pla2g7|27226|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	NM_013737|Pla2g7|27226|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
mm9_v1_chr5_-_112821192_112821232	4.56121	GLI1..3.p2	AK191065|Asphd2|72898|aspartate beta-hydroxylase domain containing 2	BC046606|Asphd2|72898|aspartate beta-hydroxylase domain containing 2	NM_028386|Asphd2|72898|aspartate beta-hydroxylase domain containing 2
mm9_v1_chr5_-_72049058_72049225	4.5063	GLI1..3.p2	AK079551|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK043806|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK137354|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK162893|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	BC094603|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK139970|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4
mm9_v1_chr12_+_25265583_25265583	4.50364	GLI1..3.p2	AF411211|Grhl1|195733|grainyhead-like 1 (Drosophila)	NM_145890|Grhl1|195733|grainyhead-like 1 (Drosophila)
mm9_v1_chr3_-_95708543_95708565	4.49167	GLI1..3.p2	BC046995|Car14|23831|carbonic anhydrase 14	AK157764|Car14|23831|carbonic anhydrase 14	AB005450|Car14|23831|carbonic anhydrase 14	NM_011797|Car14|23831|carbonic anhydrase 14
mm9_v1_chr15_+_54577256_54577521	4.4398	GLI1..3.p2	AK081944|Nov|18133|nephroblastoma overexpressed gene	AK081310|Nov|18133|nephroblastoma overexpressed gene	AK136407|Nov|18133|nephroblastoma overexpressed gene	AK155048|Nov|18133|nephroblastoma overexpressed gene	BC003774|Nov|18133|nephroblastoma overexpressed gene	NM_010930|Nov|18133|nephroblastoma overexpressed gene	X96585|Nov|18133|nephroblastoma overexpressed gene	AK039481|Nov|18133|nephroblastoma overexpressed gene	Y09257|Nov|18133|nephroblastoma overexpressed gene
mm9_v1_chr14_+_34899165_34899231	4.43809	GLI1..3.p2	BC030407|Anxa8|11752|annexin A8	NM_013473|Anxa8|11752|annexin A8	AJ002390|Anxa8|11752|annexin A8	AK009085|Anxa8|11752|annexin A8	BC013271|Anxa8|11752|annexin A8	AK075870|Anxa8|11752|annexin A8
mm9_v1_chr2_-_148701126_148701154	4.43757	GLI1..3.p2	M59470|Cst3|13010|cystatin C	BC002072|Cst3|13010|cystatin C
mm9_v1_chr4_-_151822815_151822985	4.41957	GLI1..3.p2	AK152613|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	L48983|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	AK157053|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm9_v1_chr8_-_42127124_42127219	4.40711	GLI1..3.p2	AF173380|Mtus1|102103|mitochondrial tumor suppressor 1	AF493235|Mtus1|102103|mitochondrial tumor suppressor 1	AK031693|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr6_-_148392841_148392873	4.39042	GLI1..3.p2	AK137545|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1	AK046396|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1	NM_198967|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1
mm9_v1_chr1_-_127808723_127808763	4.37665	GLI1..3.p2	BC058599|Lypd1|72585|Ly6/Plaur domain containing 1
mm9_v1_chr11_-_69419330_69419349	4.37409	GLI1..3.p2	BC042467|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide
mm9_v1_chr11_-_99283568_99283572	4.35238	GLI1..3.p2	BC131911|Krt12|268482|keratin 12	AK143182|Krt12|268482|keratin 12	U02880|Krt12|268482|keratin 12	AK053362|Krt12|268482|keratin 12	NM_010661|Krt12|268482|keratin 12
mm9_v1_chr3_+_55265654_55265683	4.34947	GLI1..3.p2	NM_001111051|Dclk1|13175|doublecortin-like kinase 1	NM_001111052|Dclk1|13175|doublecortin-like kinase 1	NM_001195539|Dclk1|13175|doublecortin-like kinase 1	NM_001195540|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr7_+_4972164_4972186	4.33088	GLI1..3.p2	AK051004|Zfp865|319748|zinc finger protein 865	BC020373|Zfp865|319748|zinc finger protein 865
mm9_v1_chr8_+_125641346_125641374	4.32348	GLI1..3.p2	AK049823|Cpne7|102278|copine VII	BC119328|Cpne7|102278|copine VII	BC137595|Cpne7|102278|copine VII
mm9_v1_chr11_+_89891661_89891661	4.28833	GLI1..3.p2	AK007878|Tmem100|67888|transmembrane protein 100	NM_026433|Tmem100|67888|transmembrane protein 100
mm9_v1_chr3_+_137286635_137286835	4.28677	GLI1..3.p2	AK018944|Ddit4l|73284|DNA-damage-inducible transcript 4-like	NM_030143|Ddit4l|73284|DNA-damage-inducible transcript 4-like	AK006617|Ddit4l|73284|DNA-damage-inducible transcript 4-like	AK053333|Ddit4l|73284|DNA-damage-inducible transcript 4-like	BC038131|Ddit4l|73284|DNA-damage-inducible transcript 4-like	AF335325|Ddit4l|73284|DNA-damage-inducible transcript 4-like
mm9_v1_chr1_-_74552346_74552441	4.28183	GLI1..3.p2	BC114208|Usp37|319651|ubiquitin specific peptidase 37	AK035640|Usp37|319651|ubiquitin specific peptidase 37
mm9_v1_chr15_+_92227240_92227311	4.26253	GLI1..3.p2	NM_001164593|Pdzrn4|239618|PDZ domain containing RING finger 4	BC151034|Pdzrn4|239618|PDZ domain containing RING finger 4
mm9_v1_chr8_+_125641197_125641276	4.18992	GLI1..3.p2	AK162900|Cpne7|102278|copine VII	NM_170684|Cpne7|102278|copine VII
mm9_v1_chr19_+_27292039_27292085	4.18974	GLI1..3.p2	BC013622|Vldlr|22359|very low density lipoprotein receptor	L33417|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr2_-_148701108_148701112	4.1799	GLI1..3.p2	AF311741|Cst3|13010|cystatin C	AF483486|Cst3|13010|cystatin C	AF483487|Cst3|13010|cystatin C
mm9_v1_chr2_+_14525932_14526000	4.16853	GLI1..3.p2	AK034054|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	NM_023116|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	FM872408|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	BC109156|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	BC109157|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit
mm9_v1_chr10_+_85763294_85763302	4.16382	GLI1..3.p2	AK082483|Timp3|21859|tissue inhibitor of metalloproteinase 3	AK128943|Timp3|21859|tissue inhibitor of metalloproteinase 3	AB041611|Timp3|21859|tissue inhibitor of metalloproteinase 3	AK083905|Timp3|21859|tissue inhibitor of metalloproteinase 3	AK147847|Timp3|21859|tissue inhibitor of metalloproteinase 3
mm9_v1_chr9_+_122481617_122481627	4.16188	GLI1..3.p2	AK048438|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK049978|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK079255|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK084074|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK135014|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene
mm9_v1_chr13_+_55471165_55471252	4.12654	GLI1..3.p2	AK154944|Rgs14|51791|regulator of G-protein signaling 14	U85055|Rgs14|51791|regulator of G-protein signaling 14
mm9_v1_chr16_-_45724720_45724763	4.12634	GLI1..3.p2	AK012333|Tagln3|56370|transgelin 3
mm9_v1_chr7_-_36103433_36103463	4.12569	GLI1..3.p2	BC100577|Gpatch1|67471|G patch domain containing 1	AK154571|Gpatch1|67471|G patch domain containing 1	AK014367|Gpatch1|67471|G patch domain containing 1	BC125584|Gpatch1|67471|G patch domain containing 1	BC132155|Gpatch1|67471|G patch domain containing 1	AK004868|Gpatch1|67471|G patch domain containing 1	NM_026181|Gpatch1|67471|G patch domain containing 1
mm9_v1_chr2_+_158436493_158436936	4.0881	GLI1..3.p2	AY578289|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	NM_009508|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	BC052020|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AK163754|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AK140468|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AK163661|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AJ001598|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1
mm9_v1_chr2_+_102498839_102498845	4.07791	GLI1..3.p2	AK134609|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077514|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AK140095|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr13_-_43295201_43295224	4.07267	GLI1..3.p2	AK036079|Gfod1|328232|glucose-fructose oxidoreductase domain containing 1
mm9_v1_chr14_-_52898946_52899069	4.0726	GLI1..3.p2	AK044202|Rab2b|76338|RAB2B, member RAS oncogene family	BC033312|Rab2b|76338|RAB2B, member RAS oncogene family	AK005230|Rab2b|76338|RAB2B, member RAS oncogene family	BC054719|Rab2b|76338|RAB2B, member RAS oncogene family	AK038393|Rab2b|76338|RAB2B, member RAS oncogene family	AK038576|Rab2b|76338|RAB2B, member RAS oncogene family	AK169657|Rab2b|76338|RAB2B, member RAS oncogene family	BC046334|Rab2b|76338|RAB2B, member RAS oncogene family	NM_172601|Rab2b|76338|RAB2B, member RAS oncogene family
mm9_v1_chr9_+_68501551_68501608	4.05785	GLI1..3.p2	AK086033|Rora|19883|RAR-related orphan receptor alpha	NM_013646|Rora|19883|RAR-related orphan receptor alpha	U53228|Rora|19883|RAR-related orphan receptor alpha
mm9_v1_chr7_-_108025317_108025394	4.04085	GLI1..3.p2	AK033211|Arhgef17|207212|Rho guanine nucleotide exchange factor (GEF) 17
mm9_v1_chr12_-_32244833_32244833	4.02482	GLI1..3.p2	AF167411|Slc26a4|23985|solute carrier family 26, member 4	NM_011867|Slc26a4|23985|solute carrier family 26, member 4
mm9_v1_chr10_+_105907394_105907408	4.01519	GLI1..3.p2	BC065133|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	EU568870|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	NM_177373|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK030621|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK220491|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm9_v1_chr19_-_40588219_40588234	3.97806	GLI1..3.p2	AK087553|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_178362|Sorbs1|20411|sorbin and SH3 domain containing 1	BC012703|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr9_+_111214242_111214242	3.97437	GLI1..3.p2	AK079552|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1	NM_001164659|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1
mm9_v1_chr19_+_56798916_56798947	3.96693	GLI1..3.p2	AK039569|Adrb1|11554|adrenergic receptor, beta 1
mm9_v1_chr2_+_164311755_164311970	3.94732	GLI1..3.p2	BC030298|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2	NM_026797|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr2_+_156246644_156246847	3.92724	GLI1..3.p2	AK147611|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK147272|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK165479|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_001003815|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_013510|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK044744|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK154704|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AF061283|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	BC034751|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr15_+_100766701_100766755	3.92344	GLI1..3.p2	NM_011323|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	U26707|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AF049617|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr16_-_30550622_30550663	3.85252	GLI1..3.p2	AK031524|Tmem44|224090|transmembrane protein 44	AK045675|Tmem44|224090|transmembrane protein 44	AK048655|Tmem44|224090|transmembrane protein 44	NM_172614|Tmem44|224090|transmembrane protein 44
mm9_v1_chr18_-_32109233_32109289	3.84768	GLI1..3.p2	BC070439|Gpr17|574402|G protein-coupled receptor 17	NM_001025381|Gpr17|574402|G protein-coupled receptor 17
mm9_v1_chr10_-_63552994_63553028	3.84091	GLI1..3.p2	AK036366|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK163753|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035773|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035858|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035882|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	NM_178678|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK032485|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK036180|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3
mm9_v1_chr11_-_116515361_116515394	3.83787	GLI1..3.p2	AK172475|Cygb|114886|cytoglobin	AK163073|Cygb|114886|cytoglobin
mm9_v1_chr7_+_133966816_133966816	3.83484	GLI1..3.p2	AK131642|Fam57b|68952|family with sequence similarity 57, member B	NM_029978|Fam57b|68952|family with sequence similarity 57, member B
mm9_v1_chr11_+_59475986_59476013	3.82534	GLI1..3.p2	AK154807|Mprip|26936|myosin phosphatase Rho interacting protein	NM_012027|Mprip|26936|myosin phosphatase Rho interacting protein	NM_201245|Mprip|26936|myosin phosphatase Rho interacting protein	AK158296|Mprip|26936|myosin phosphatase Rho interacting protein	AK171089|Mprip|26936|myosin phosphatase Rho interacting protein	AK170849|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr11_+_54117299_54117368	3.8129	GLI1..3.p2	AY786363|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	AK147283|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	NM_001033598|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	BC016114|Acsl6|216739|acyl-CoA synthetase long-chain family member 6
mm9_v1_chr4_-_133054355_133054483	3.79635	GLI1..3.p2	BC049168|Trnp1|69539|TMF1-regulated nuclear protein 1	NM_001081156|Trnp1|69539|TMF1-regulated nuclear protein 1
mm9_v1_chr13_-_9764195_9764212	3.77396	GLI1..3.p2	BC058999|Zmynd11|66505|zinc finger, MYND domain containing 11
mm9_v1_chr10_+_79712179_79712219	3.75756	GLI1..3.p2	AK003132|Ndufs7|75406|NADH dehydrogenase (ubiquinone) Fe-S protein 7	NM_029272|Ndufs7|75406|NADH dehydrogenase (ubiquinone) Fe-S protein 7	BC013503|Ndufs7|75406|NADH dehydrogenase (ubiquinone) Fe-S protein 7
mm9_v1_chr6_-_141804691_141804757	3.75251	GLI1..3.p2	AB031814|Slco1a4|28250|solute carrier organic anion transporter family, member 1a4	NM_030687|Slco1a4|28250|solute carrier organic anion transporter family, member 1a4
mm9_v1_chr19_+_47303332_47303400	3.75181	GLI1..3.p2	NM_001163480|Neurl1a|18011|neuralized homolog 1A (Drosophila)	AF401228|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr16_+_20590162_20590218	3.74356	GLI1..3.p2	AK048916|Vwa5b2|328643|von Willebrand factor A domain containing 5B2	BC052055|Vwa5b2|328643|von Willebrand factor A domain containing 5B2
mm9_v1_chr3_+_105255247_105255337	3.74064	GLI1..3.p2	NM_001039347|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AK147574|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr19_+_27291507_27291624	3.72703	GLI1..3.p2	AK044683|Vldlr|22359|very low density lipoprotein receptor	AK076172|Vldlr|22359|very low density lipoprotein receptor	NM_001161420|Vldlr|22359|very low density lipoprotein receptor	NM_013703|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr19_+_28909559_28909655	3.72166	GLI1..3.p2	AK018188|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK045632|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK051428|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK083097|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	BC065099|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	BC064797|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	D43797|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	NM_009199|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	U73521|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
mm9_v1_chr3_-_97672147_97672234	3.71361	GLI1..3.p2	AK141917|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_177145|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr14_+_58693951_58693999	3.70046	GLI1..3.p2	AK158584|Fgf9|14180|fibroblast growth factor 9
mm9_v1_chr2_+_71367501_71367643	3.67445	GLI1..3.p2	NM_010053|Dlx1|13390|distal-less homeobox 1	U51001|Dlx1|13390|distal-less homeobox 1	BC079609|Dlx1|13390|distal-less homeobox 1
mm9_v1_chr5_-_3802874_3803076	3.66446	GLI1..3.p2	BC145510|Ankib1|70797|ankyrin repeat and IBR domain containing 1	BC145511|Ankib1|70797|ankyrin repeat and IBR domain containing 1	BC150792|Ankib1|70797|ankyrin repeat and IBR domain containing 1	AK129343|Ankib1|70797|ankyrin repeat and IBR domain containing 1
mm9_v1_chr11_+_117019684_117019751	3.65787	GLI1..3.p2	AK012734|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	AK185370|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)
mm9_v1_chr12_+_62624880_62624934	3.65248	GLI1..3.p2	AK220546|Lrfn5|238205|leucine rich repeat and fibronectin type III domain containing 5
mm9_v1_chr3_+_136333083_136333098	3.64925	GLI1..3.p2	AK146387|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr7_+_30093030_30093065	3.6338	GLI1..3.p2	AK142419|Dpf1|29861|D4, zinc and double PHD fingers family 1	U48239|Dpf1|29861|D4, zinc and double PHD fingers family 1
mm9_v1_chr19_+_55390850_55390853	3.63029	GLI1..3.p2	AK004751|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)
mm9_v1_chr16_-_14159346_14159388	3.60051	GLI1..3.p2	AK158881|4921513D23Rik|223989|RIKEN cDNA 4921513D23 gene	NM_001081154|4921513D23Rik|223989|RIKEN cDNA 4921513D23 gene
mm9_v1_chr8_+_11728104_11728202	3.58799	GLI1..3.p2	NM_001113517|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK129064|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK139156|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)
mm9_v1_chr4_+_33069972_33070146	3.58479	GLI1..3.p2	NM_027491|Rragd|52187|Ras-related GTP binding D	AF490406|Rragd|52187|Ras-related GTP binding D
mm9_v1_chr5_+_148768875_148768913	3.58461	GLI1..3.p2	AK147457|Mtus2|77521|microtubule associated tumor suppressor candidate 2	NM_029920|Mtus2|77521|microtubule associated tumor suppressor candidate 2
mm9_v1_chr12_-_32244177_32244250	3.57476	GLI1..3.p2	BC140995|Slc26a4|23985|solute carrier family 26, member 4
mm9_v1_chr10_+_18564876_18564915	3.5199	GLI1..3.p2	AF249870|Perp|64058|PERP, TP53 apoptosis effector	NM_022032|Perp|64058|PERP, TP53 apoptosis effector
mm9_v1_chr6_+_124946723_124946772	3.51812	GLI1..3.p2	AK082984|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_175696|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr2_+_174123359_174123359	3.50628	GLI1..3.p2	AY519501|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AY519502|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AY519503|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AY519504|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_001077507|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_010309|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_201617|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_201618|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr14_-_52898915_52898939	3.49923	GLI1..3.p2	AB232586|Rab2b|76338|RAB2B, member RAS oncogene family	AK160351|Rab2b|76338|RAB2B, member RAS oncogene family
mm9_v1_chr6_+_48345584_48345680	3.49444	GLI1..3.p2	AK040525|Krba1|77827|KRAB-A domain containing 1	NM_133922|Krba1|77827|KRAB-A domain containing 1	AB041543|Krba1|77827|KRAB-A domain containing 1	AK158136|4930447G04Rik|74869|RIKEN cDNA 4930447G04 gene	AK128931|Krba1|77827|KRAB-A domain containing 1	AK173281|Krba1|77827|KRAB-A domain containing 1	BC066816|Krba1|77827|KRAB-A domain containing 1
mm9_v1_chr9_-_119002573_119002594	3.48529	GLI1..3.p2	BC015249|Plcd1|18799|phospholipase C, delta 1	BC025798|Plcd1|18799|phospholipase C, delta 1
mm9_v1_chr9_+_103014445_103014461	3.47652	GLI1..3.p2	AK035893|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr2_+_32483909_32483988	3.46943	GLI1..3.p2	NM_001198792|Ak1|11636|adenylate kinase 1	AJ010108|Ak1|11636|adenylate kinase 1
mm9_v1_chr11_+_4958024_4958308	3.46732	GLI1..3.p2	AK008807|Rasl10a|75668|RAS-like, family 10, member A	AK044011|Rasl10a|75668|RAS-like, family 10, member A	NM_145216|Rasl10a|75668|RAS-like, family 10, member A	BC107200|Rasl10a|75668|RAS-like, family 10, member A	BC107201|Rasl10a|75668|RAS-like, family 10, member A	AF498251|Rasl10a|75668|RAS-like, family 10, member A
mm9_v1_chrX_-_133403050_133403118	3.46496	GLI1..3.p2	BC107383|Rab9b|319642|RAB9B, member RAS oncogene family	AK034442|Rab9b|319642|RAB9B, member RAS oncogene family	NM_176971|Rab9b|319642|RAB9B, member RAS oncogene family	AK049693|Rab9b|319642|RAB9B, member RAS oncogene family
mm9_v1_chr15_+_83622380_83622428	3.45218	GLI1..3.p2	BC057550|Mpped1|223726|metallophosphoesterase domain containing 1
mm9_v1_chr11_+_29592897_29592944	3.4478	GLI1..3.p2	NM_194052|Rtn4|68585|reticulon 4	NM_194053|Rtn4|68585|reticulon 4	NM_194054|Rtn4|68585|reticulon 4
mm9_v1_chr8_-_13890244_13890296	3.42416	GLI1..3.p2	BC029192|2410022L05Rik|66423|RIKEN cDNA 2410022L05 gene	AK010573|2410022L05Rik|66423|RIKEN cDNA 2410022L05 gene	AK008882|2410022L05Rik|66423|RIKEN cDNA 2410022L05 gene	NM_025556|2410022L05Rik|66423|RIKEN cDNA 2410022L05 gene
mm9_v1_chr18_-_25637339_25637341	3.42299	GLI1..3.p2	AK038871|Celf4|108013|CUGBP, Elav-like family member 4
mm9_v1_chr9_-_56008828_56008912	3.42256	GLI1..3.p2	AK159621|Tspan3|56434|tetraspanin 3	AK159324|Tspan3|56434|tetraspanin 3	AK169068|Tspan3|56434|tetraspanin 3	BC043072|Tspan3|56434|tetraspanin 3	AK146130|Tspan3|56434|tetraspanin 3	AK168231|Tspan3|56434|tetraspanin 3	NM_019793|Tspan3|56434|tetraspanin 3
mm9_v1_chr14_-_52899101_52899219	3.40711	GLI1..3.p2	AK160249|Rab2b|76338|RAB2B, member RAS oncogene family
mm9_v1_chr5_+_102194207_102194308	3.40605	GLI1..3.p2	AF533367|Cds1|74596|CDP-diacylglycerol synthase 1
mm9_v1_chr12_+_32008372_32008419	3.40554	GLI1..3.p2	AK141833|Lamb1|16777|laminin B1
mm9_v1_chr11_-_118770873_118770885	3.40033	GLI1..3.p2	AK079086|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	NM_001024931|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	NM_001039167|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	NM_001039168|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3
mm9_v1_chr7_+_97497207_97497237	3.39481	GLI1..3.p2	BC052915|Sytl2|83671|synaptotagmin-like 2	AB057754|Sytl2|83671|synaptotagmin-like 2	AB057760|Sytl2|83671|synaptotagmin-like 2	AB057761|Sytl2|83671|synaptotagmin-like 2	AB057762|Sytl2|83671|synaptotagmin-like 2	NM_001040085|Sytl2|83671|synaptotagmin-like 2	NM_031394|Sytl2|83671|synaptotagmin-like 2	BC064769|Sytl2|83671|synaptotagmin-like 2	BC138714|Sytl2|83671|synaptotagmin-like 2	BC145398|Sytl2|83671|synaptotagmin-like 2
mm9_v1_chr1_+_181598319_181598619	3.3651	GLI1..3.p2	AK086448|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK046033|Sccpdh|109232|saccharopine dehydrogenase (putative)	NM_178653|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK086632|Sccpdh|109232|saccharopine dehydrogenase (putative)	BC025803|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK046468|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK145399|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK081021|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK077695|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK050554|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK166018|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK042919|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK082803|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK182882|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK215316|Sccpdh|109232|saccharopine dehydrogenase (putative)
mm9_v1_chr8_+_116963591_116963600	3.3591	GLI1..3.p2	AK019911|Wwox|80707|WW domain-containing oxidoreductase	BC014716|Wwox|80707|WW domain-containing oxidoreductase	AK078528|Wwox|80707|WW domain-containing oxidoreductase	AF187014|Wwox|80707|WW domain-containing oxidoreductase
mm9_v1_chr11_-_50729643_50729683	3.35271	GLI1..3.p2	BC057171|Zfp2|22678|zinc finger protein 2	AK042734|Zfp2|22678|zinc finger protein 2	AK141471|Zfp2|22678|zinc finger protein 2	BC089506|Zfp2|22678|zinc finger protein 2	AK131978|Zfp2|22678|zinc finger protein 2	NM_001044697|Zfp2|22678|zinc finger protein 2	NM_001044698|Zfp2|22678|zinc finger protein 2	NM_001044699|Zfp2|22678|zinc finger protein 2	NM_001044700|Zfp2|22678|zinc finger protein 2	AK036776|Zfp2|22678|zinc finger protein 2
mm9_v1_chr9_-_119002601_119002619	3.35088	GLI1..3.p2	AF133125|Plcd1|18799|phospholipase C, delta 1	AK082890|Plcd1|18799|phospholipase C, delta 1	NM_019676|Plcd1|18799|phospholipase C, delta 1	U85711|Plcd1|18799|phospholipase C, delta 1	AK028749|Plcd1|18799|phospholipase C, delta 1
mm9_v1_chr7_-_119301920_119301970	3.34148	GLI1..3.p2	BC050934|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	BC046304|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	AK013622|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	AK013054|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)
mm9_v1_chr6_-_13788580_13788612	3.33682	GLI1..3.p2	AK047740|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr9_-_75446888_75446974	3.32996	GLI1..3.p2	AK076562|Tmod2|50876|tropomodulin 2	AK015263|Tmod2|50876|tropomodulin 2	AK017072|Tmod2|50876|tropomodulin 2	BC052227|Tmod2|50876|tropomodulin 2	NM_001038710|Tmod2|50876|tropomodulin 2	AK015719|Tmod2|50876|tropomodulin 2
mm9_v1_chr10_+_86241749_86241796	3.32763	GLI1..3.p2	NM_175331|Nt5dc3|103466|5'-nucleotidase domain containing 3	AK147488|Nt5dc3|103466|5'-nucleotidase domain containing 3	AK172248|Nt5dc3|103466|5'-nucleotidase domain containing 3
mm9_v1_chr7_-_52230179_52230183	3.3249	GLI1..3.p2	AK035790|Cpt1c|78070|carnitine palmitoyltransferase 1c
mm9_v1_chr2_+_69660426_69660529	3.31842	GLI1..3.p2	BC072626|Klhl23|277396|kelch-like 23 (Drosophila)	NM_177784|Klhl23|277396|kelch-like 23 (Drosophila)	AK048518|Klhl23|277396|kelch-like 23 (Drosophila)
mm9_v1_chr5_+_143734622_143734709	3.31498	GLI1..3.p2	
mm9_v1_chr12_+_110784600_110784655	3.30247	GLI1..3.p2	AK032021|Meg3|17263|maternally expressed 3	AK141629|Meg3|17263|maternally expressed 3
mm9_v1_chr11_-_118770859_118770872	3.30032	GLI1..3.p2	AK049926|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	AK160816|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	AK086669|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3
mm9_v1_chr11_+_29592946_29593072	3.29492	GLI1..3.p2	AK220511|Rtn4|68585|reticulon 4	AY102281|Rtn4|68585|reticulon 4	AY102282|Rtn4|68585|reticulon 4	AY102284|Rtn4|68585|reticulon 4	AY114152|Rtn4|68585|reticulon 4	AY114153|Rtn4|68585|reticulon 4	AK034902|Rtn4|68585|reticulon 4	BC056373|Rtn4|68585|reticulon 4
mm9_v1_chr11_-_96680500_96680758	3.27481	GLI1..3.p2	AK201733|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	BC022152|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr2_+_149656518_149656618	3.2648	GLI1..3.p2	NM_001085521|Tmem90b|433485|transmembrane protein 90B
mm9_v1_chr1_+_44608355_44608562	3.26177	GLI1..3.p2	BC032154|Gulp1|70676|GULP, engulfment adaptor PTB domain containing 1	AK036670|Gulp1|70676|GULP, engulfment adaptor PTB domain containing 1	NM_028450|Gulp1|70676|GULP, engulfment adaptor PTB domain containing 1	AK017798|Gulp1|70676|GULP, engulfment adaptor PTB domain containing 1	AK028490|Gulp1|70676|GULP, engulfment adaptor PTB domain containing 1
mm9_v1_chr16_-_18622449_18622495	3.25573	GLI1..3.p2	BC138156|Gp1bb|14724|glycoprotein Ib, beta polypeptide	BC145160|Gp1bb|14724|glycoprotein Ib, beta polypeptide	BC053108|Gp1bb|14724|glycoprotein Ib, beta polypeptide	NM_001001999|Gp1bb|14724|glycoprotein Ib, beta polypeptide	NM_010327|Gp1bb|14724|glycoprotein Ib, beta polypeptide
mm9_v1_chr15_+_78258993_78259251	3.22811	GLI1..3.p2	BC144818|Kctd17|72844|potassium channel tetramerisation domain containing 17	BC144820|Kctd17|72844|potassium channel tetramerisation domain containing 17	BC145799|Kctd17|72844|potassium channel tetramerisation domain containing 17	NM_001081367|Kctd17|72844|potassium channel tetramerisation domain containing 17
mm9_v1_chr8_+_86423968_86424035	3.22496	GLI1..3.p2	NM_181039|Lphn1|330814|latrophilin 1	AK147455|Lphn1|330814|latrophilin 1
mm9_v1_chr11_-_116515602_116515626	3.17442	GLI1..3.p2	AK087408|Cygb|114886|cytoglobin	BC055040|Cygb|114886|cytoglobin	AK019410|Cygb|114886|cytoglobin	NM_030206|Cygb|114886|cytoglobin
mm9_v1_chr7_+_28043818_28043826	3.17187	GLI1..3.p2	AK147523|Numbl|18223|numb-like
mm9_v1_chr5_-_125659422_125659602	3.15934	GLI1..3.p2	AF125671|Ncor2|20602|nuclear receptor co-repressor 2	BC057218|Ncor2|20602|nuclear receptor co-repressor 2	AK147394|Ncor2|20602|nuclear receptor co-repressor 2	AF113002|Ncor2|20602|nuclear receptor co-repressor 2	NM_011424|Ncor2|20602|nuclear receptor co-repressor 2
mm9_v1_chr1_-_127808790_127808807	3.15366	GLI1..3.p2	AB041649|Lypd1|72585|Ly6/Plaur domain containing 1	AK045592|Lypd1|72585|Ly6/Plaur domain containing 1	NM_145100|Lypd1|72585|Ly6/Plaur domain containing 1
mm9_v1_chr9_+_20673069_20673163	3.1467	GLI1..3.p2	BC031510|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene	NM_175687|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene	AK157146|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene	AK149161|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene	BC043448|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene
mm9_v1_chr3_-_104315689_104315735	3.14044	GLI1..3.p2	BC138422|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2	BC094228|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chr12_+_4082739_4082786	3.12337	GLI1..3.p2	AY035893|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27
mm9_v1_chr16_-_91011339_91011552	3.1199	GLI1..3.p2	NM_001045515|Synj1|104015|synaptojanin 1	NM_001164483|Synj1|104015|synaptojanin 1
mm9_v1_chrX_-_45245608_45245760	3.11299	GLI1..3.p2	AK035068|Smarca1|93761|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	AK030741|Smarca1|93761|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	AK032978|Smarca1|93761|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	AK052092|Smarca1|93761|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	BC016071|Smarca1|93761|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	AF325920|Smarca1|93761|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	BC057115|Smarca1|93761|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	NM_053123|Smarca1|93761|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
mm9_v1_chr15_-_95358989_95359075	3.10874	GLI1..3.p2	AK039790|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr15_+_103333440_103333464	3.09921	GLI1..3.p2	BC058531|Pde1b|18574|phosphodiesterase 1B, Ca2+-calmodulin dependent
mm9_v1_chr13_-_9764376_9764487	3.08871	GLI1..3.p2	BC022945|Zmynd11|66505|zinc finger, MYND domain containing 11	AK077732|Zmynd11|66505|zinc finger, MYND domain containing 11	NM_144516|Zmynd11|66505|zinc finger, MYND domain containing 11
mm9_v1_chr16_-_67621054_67621188	3.07516	GLI1..3.p2	AK046800|Cadm2|239857|cell adhesion molecule 2	AK163636|Cadm2|239857|cell adhesion molecule 2	AK038842|Cadm2|239857|cell adhesion molecule 2	AK043760|Cadm2|239857|cell adhesion molecule 2	AK165030|Cadm2|239857|cell adhesion molecule 2	NM_001145977|Cadm2|239857|cell adhesion molecule 2	NM_178721|Cadm2|239857|cell adhesion molecule 2
mm9_v1_chr5_-_76733770_76733829	3.07102	GLI1..3.p2	AK030352|Clock|12753|circadian locomotor output cycles kaput	AK040337|Clock|12753|circadian locomotor output cycles kaput	AK041303|Clock|12753|circadian locomotor output cycles kaput	AK140803|LOC620729|620729|hypothetical protein LOC620729	AK158765|Clock|12753|circadian locomotor output cycles kaput	AK129118|Clock|12753|circadian locomotor output cycles kaput
mm9_v1_chr14_+_121434765_121434823	3.06271	GLI1..3.p2	AK134958|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	NM_134082|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm9_v1_chrX_-_148777014_148777028	3.06112	GLI1..3.p2	NM_029836|Tspyl2|52808|TSPY-like 2
mm9_v1_chr17_+_24625709_24625729	3.05785	GLI1..3.p2	NM_027937|Caskin1|268932|CASK interacting protein 1
mm9_v1_chr10_+_85763267_85763281	3.05246	GLI1..3.p2	Z30970|Timp3|21859|tissue inhibitor of metalloproteinase 3
mm9_v1_chr9_-_108208304_108208348	3.04501	GLI1..3.p2	AK133663|Tcta|102791|T-cell leukemia translocation altered gene
mm9_v1_chr7_+_133416177_133416391	3.04006	GLI1..3.p2	BC025837|Sbk1|104175|SH3-binding kinase 1	BC024114|Sbk1|104175|SH3-binding kinase 1
mm9_v1_chr8_-_73982014_73982139	3.04	GLI1..3.p2	AK185006|Abhd8|64296|abhydrolase domain containing 8	AK178673|Abhd8|64296|abhydrolase domain containing 8	AK179035|Abhd8|64296|abhydrolase domain containing 8	AK184390|Abhd8|64296|abhydrolase domain containing 8	AK187254|Abhd8|64296|abhydrolase domain containing 8	AK207815|Abhd8|64296|abhydrolase domain containing 8	AK209444|Abhd8|64296|abhydrolase domain containing 8	AK181691|Abhd8|64296|abhydrolase domain containing 8	AK185637|Abhd8|64296|abhydrolase domain containing 8	AK189463|Abhd8|64296|abhydrolase domain containing 8	AK181236|Abhd8|64296|abhydrolase domain containing 8
mm9_v1_chr9_+_40494347_40494411	3.03531	GLI1..3.p2	AY326421|9030425E11Rik|71566|RIKEN cDNA 9030425E11 gene
mm9_v1_chr11_+_103994128_103994138	3.02245	GLI1..3.p2	AK144430|Crhr1|12921|corticotropin releasing hormone receptor 1
mm9_v1_chr3_+_136333251_136333262	3.02092	GLI1..3.p2	AK166287|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr14_-_76956445_76956583	3.02063	GLI1..3.p2	AY425619|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	NM_001160326|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	AK012850|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2
mm9_v1_chr7_-_116879475_116879535	3.00625	GLI1..3.p2	AK194605|Tmem9b|56786|TMEM9 domain family, member B
mm9_v1_chr13_+_34967479_34967496	3.0057	GLI1..3.p2	AK021274|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	AK083926|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	AK020579|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm9_v1_chr9_-_95307645_95307747	3.00062	GLI1..3.p2	NM_018763|Chst2|54371|carbohydrate sulfotransferase 2
mm9_v1_chr19_+_55390770_55390846	2.98428	GLI1..3.p2	AK135463|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AK014541|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AK148281|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AK030538|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AF035209|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	BC089321|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AF035823|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AK028646|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	NM_016862|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	BC012211|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AK035895|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)
mm9_v1_chr15_-_103368312_103368499	2.98325	GLI1..3.p2	AF281676|Ppp1r1a|58200|protein phosphatase 1, regulatory (inhibitor) subunit 1A	BC025123|Ppp1r1a|58200|protein phosphatase 1, regulatory (inhibitor) subunit 1A	NM_021391|Ppp1r1a|58200|protein phosphatase 1, regulatory (inhibitor) subunit 1A
mm9_v1_chr4_+_151653120_151653375	2.98083	GLI1..3.p2	BC037650|Gpr153|100129|G protein-coupled receptor 153	BC029098|Gpr153|100129|G protein-coupled receptor 153	AY255610|Gpr153|100129|G protein-coupled receptor 153
mm9_v1_chr8_+_107899280_107899280	2.96049	GLI1..3.p2	NM_001081333|Plekhg4|102075|pleckstrin homology domain containing, family G (with RhoGef domain) member 4
mm9_v1_chr5_+_102194126_102194174	2.95614	GLI1..3.p2	BC055292|Cds1|74596|CDP-diacylglycerol synthase 1	NM_173370|Cds1|74596|CDP-diacylglycerol synthase 1
mm9_v1_chr6_-_115201790_115201797	2.9555	GLI1..3.p2	AF282730|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chrX_-_73120485_73120524	2.95309	GLI1..3.p2	AK165540|Pls3|102866|plastin 3 (T-isoform)	NM_001166453|Pls3|102866|plastin 3 (T-isoform)
mm9_v1_chr13_+_42776161_42776182	2.95166	GLI1..3.p2	AK047654|Phactr1|218194|phosphatase and actin regulator 1	AY993932|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr7_-_52230091_52230104	2.94093	GLI1..3.p2	AK087747|Cpt1c|78070|carnitine palmitoyltransferase 1c	BC083317|Cpt1c|78070|carnitine palmitoyltransferase 1c
mm9_v1_chr7_-_119302546_119302570	2.92776	GLI1..3.p2	AF177400|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	AJ243964|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	AK004853|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	NM_015814|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)
mm9_v1_chr4_-_47487233_47487247	2.92628	GLI1..3.p2	NM_019998|Alg2|56737|asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)
mm9_v1_chr14_+_120705667_120705677	2.91939	GLI1..3.p2	AK153261|Mbnl2|105559|muscleblind-like 2	AK167694|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr11_-_102331042_102331196	2.91581	GLI1..3.p2	AK158443|Itga2b|16399|integrin alpha 2b	BC120493|Itga2b|16399|integrin alpha 2b	BC137570|Itga2b|16399|integrin alpha 2b	AK157012|Itga2b|16399|integrin alpha 2b	AF166384|Itga2b|16399|integrin alpha 2b	AF170316|Itga2b|16399|integrin alpha 2b	AK142289|Itga2b|16399|integrin alpha 2b	AK156872|Itga2b|16399|integrin alpha 2b	AK154619|Itga2b|16399|integrin alpha 2b	NM_010575|Itga2b|16399|integrin alpha 2b
mm9_v1_chr8_+_116963542_116963590	2.91521	GLI1..3.p2	NM_019573|Wwox|80707|WW domain-containing oxidoreductase
mm9_v1_chr8_-_125777949_125778247	2.91076	GLI1..3.p2	AK051715|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK154409|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK155433|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK010402|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK005046|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK028751|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK151498|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	NM_028200|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	BC057621|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK032561|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AY751521|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene
mm9_v1_chr6_+_113433656_113433876	2.90342	GLI1..3.p2	BC025932|Creld1|171508|cysteine-rich with EGF-like domains 1	AK186017|Creld1|171508|cysteine-rich with EGF-like domains 1	AK195695|Creld1|171508|cysteine-rich with EGF-like domains 1	AK208544|Creld1|171508|cysteine-rich with EGF-like domains 1
mm9_v1_chr11_-_115948206_115948253	2.89587	GLI1..3.p2	BC031908|Wbp2|22378|WW domain binding protein 2	AK043037|Wbp2|22378|WW domain binding protein 2	AK150018|Wbp2|22378|WW domain binding protein 2	AK162810|Wbp2|22378|WW domain binding protein 2
mm9_v1_chr3_-_115417847_115417876	2.88575	GLI1..3.p2	BC049094|S1pr1|13609|sphingosine-1-phosphate receptor 1	AK138316|S1pr1|13609|sphingosine-1-phosphate receptor 1
mm9_v1_chr14_-_62911797_62911815	2.88562	GLI1..3.p2	BC038059|Dleu7|239133|deleted in lymphocytic leukemia, 7	NM_173419|Dleu7|239133|deleted in lymphocytic leukemia, 7
mm9_v1_chr6_-_129401762_129402017	2.88396	GLI1..3.p2	AK049608|Clec1a|243653|C-type lectin domain family 1, member a	AK031121|Clec1a|243653|C-type lectin domain family 1, member a	BC052840|Clec1a|243653|C-type lectin domain family 1, member a	AK036846|Clec1a|243653|C-type lectin domain family 1, member a	AK165920|Clec1a|243653|C-type lectin domain family 1, member a	NM_175526|Clec1a|243653|C-type lectin domain family 1, member a
mm9_v1_chr3_-_115417932_115417972	2.88251	GLI1..3.p2	AK004591|S1pr1|13609|sphingosine-1-phosphate receptor 1	NM_007901|S1pr1|13609|sphingosine-1-phosphate receptor 1
mm9_v1_chr5_-_37380147_37380223	2.87994	GLI1..3.p2	AJ011971|Wfs1|22393|Wolfram syndrome 1 homolog (human)	AF084482|Wfs1|22393|Wolfram syndrome 1 homolog (human)	BC046988|Wfs1|22393|Wolfram syndrome 1 homolog (human)	AK144561|Wfs1|22393|Wolfram syndrome 1 homolog (human)	AK170180|Wfs1|22393|Wolfram syndrome 1 homolog (human)	AK145023|Wfs1|22393|Wolfram syndrome 1 homolog (human)	NM_011716|Wfs1|22393|Wolfram syndrome 1 homolog (human)
mm9_v1_chr15_-_101510717_101510719	2.87459	GLI1..3.p2	AK137688|Krt6b|16688|keratin 6B	NM_010669|Krt6b|16688|keratin 6B
mm9_v1_chr13_+_34967386_34967448	2.8733	GLI1..3.p2	BC080864|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	BC059713|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	AK078611|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	BC141272|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	BC141273|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	BC042521|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm9_v1_chr12_+_103793130_103793206	2.85497	GLI1..3.p2	M64278|Chga|12652|chromogranin A	NM_007693|Chga|12652|chromogranin A	AK144504|Chga|12652|chromogranin A	BC026554|Chga|12652|chromogranin A
mm9_v1_chr4_+_108551674_108551769	2.85298	GLI1..3.p2	AK082959|Rab3b|69908|RAB3B, member RAS oncogene family	NM_023537|Rab3b|69908|RAB3B, member RAS oncogene family	AK012165|Rab3b|69908|RAB3B, member RAS oncogene family	BC051918|Rab3b|69908|RAB3B, member RAS oncogene family
mm9_v1_chr6_+_71443984_71443996	2.8266	GLI1..3.p2	BC137624|Rnf103|22644|ring finger protein 103
mm9_v1_chr6_+_113433507_113433615	2.82522	GLI1..3.p2	BC029065|Creld1|171508|cysteine-rich with EGF-like domains 1	AK155777|Creld1|171508|cysteine-rich with EGF-like domains 1	AB009020|Creld1|171508|cysteine-rich with EGF-like domains 1	BC010804|Creld1|171508|cysteine-rich with EGF-like domains 1	BC023893|Creld1|171508|cysteine-rich with EGF-like domains 1	NM_133930|Creld1|171508|cysteine-rich with EGF-like domains 1
mm9_v1_chr11_-_101087730_101087737	2.82031	GLI1..3.p2	AK154565|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)
mm9_v1_chr7_+_106416854_106416924	2.81994	GLI1..3.p2	NM_001043355|Mtap6|17760|microtubule-associated protein 6	AK154455|Mtap6|17760|microtubule-associated protein 6	Y16032|Mtap6|17760|microtubule-associated protein 6
mm9_v1_chr5_-_149740213_149740268	2.81178	GLI1..3.p2	NM_153572|Katnal1|231912|katanin p60 subunit A-like 1
mm9_v1_chr5_-_150438750_150438824	2.80912	GLI1..3.p2	BC018378|Hsph1|15505|heat shock 105kDa/110kDa protein 1	D67017|Hsph1|15505|heat shock 105kDa/110kDa protein 1	L40406|Hsph1|15505|heat shock 105kDa/110kDa protein 1	AK146697|Hsph1|15505|heat shock 105kDa/110kDa protein 1
mm9_v1_chr11_+_51103421_51103421	2.7971	GLI1..3.p2	AF410792|Col23a1|237759|collagen, type XXIII, alpha 1	NM_153393|Col23a1|237759|collagen, type XXIII, alpha 1
mm9_v1_chr5_-_115750998_115751012	2.79174	GLI1..3.p2	NM_019682|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr16_-_85173764_85173823	2.78967	GLI1..3.p2	AK218334|App|11820|amyloid beta (A4) precursor protein	AY267348|App|11820|amyloid beta (A4) precursor protein	AK148439|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr9_+_40494076_40494232	2.78922	GLI1..3.p2	AK028983|9030425E11Rik|71566|RIKEN cDNA 9030425E11 gene	AK080481|9030425E11Rik|71566|RIKEN cDNA 9030425E11 gene	AB040490|9030425E11Rik|71566|RIKEN cDNA 9030425E11 gene	BC026447|9030425E11Rik|71566|RIKEN cDNA 9030425E11 gene
mm9_v1_chr4_-_137882005_137882036	2.78396	GLI1..3.p2	BC018561|Pink1|68943|PTEN induced putative kinase 1
mm9_v1_chr7_+_112574326_112574358	2.77866	GLI1..3.p2	AK039721|Cckbr|12426|cholecystokinin B receptor	NM_007627|Cckbr|12426|cholecystokinin B receptor	AK028325|Cckbr|12426|cholecystokinin B receptor	BC103530|Cckbr|12426|cholecystokinin B receptor	BC103531|Cckbr|12426|cholecystokinin B receptor	BC103537|Cckbr|12426|cholecystokinin B receptor	BC103538|Cckbr|12426|cholecystokinin B receptor
mm9_v1_chr12_+_83412335_83412335	2.77259	GLI1..3.p2	NM_172579|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1
mm9_v1_chr3_+_133903056_133903111	2.76588	GLI1..3.p2	NM_001004367|Cxxc4|319478|CXXC finger 4
mm9_v1_chr5_+_58111361_58111407	2.76558	GLI1..3.p2	AK165115|Pcdh7|54216|protocadherin 7
mm9_v1_chr11_-_102080155_102080242	2.76557	GLI1..3.p2	AK156008|Hdac5|15184|histone deacetylase 5	AK157159|Hdac5|15184|histone deacetylase 5
mm9_v1_chr16_-_44333103_44333308	2.76198	GLI1..3.p2	AK171920|Sidt1|320007|SID1 transmembrane family, member 1	AK172408|Sidt1|320007|SID1 transmembrane family, member 1	AK171897|Sidt1|320007|SID1 transmembrane family, member 1	AK047199|Sidt1|320007|SID1 transmembrane family, member 1	AK046836|Sidt1|320007|SID1 transmembrane family, member 1
mm9_v1_chr13_+_94077988_94077988	2.7533	GLI1..3.p2	AY137385|Homer1|26556|homer homolog 1 (Drosophila)	NM_152134|Homer1|26556|homer homolog 1 (Drosophila)
mm9_v1_chr7_+_148247172_148247172	2.74863	GLI1..3.p2	AB114827|B4galnt4|330671|beta-1,4-N-acetyl-galactosaminyl transferase 4	NM_177897|B4galnt4|330671|beta-1,4-N-acetyl-galactosaminyl transferase 4
mm9_v1_chr3_-_127201974_127202032	2.74642	GLI1..3.p2	AK044634|Ank2|109676|ankyrin 2, brain
mm9_v1_chr13_-_34169854_34169887	2.74162	GLI1..3.p2	BC055441|Tubb2a|22151|tubulin, beta 2A	AK134545|Tubb2a|22151|tubulin, beta 2A	NM_009450|Tubb2a|22151|tubulin, beta 2A
mm9_v1_chr11_+_78059452_78059655	2.73825	GLI1..3.p2	AK002496|Sdf2|20316|stromal cell derived factor 2	BC062881|Sdf2|20316|stromal cell derived factor 2	BC087871|Sdf2|20316|stromal cell derived factor 2	D50646|Sdf2|20316|stromal cell derived factor 2
mm9_v1_chr15_-_75397030_75397077	2.73739	GLI1..3.p2	AK034884|Ly6h|23934|lymphocyte antigen 6 complex, locus H	NM_001135689|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chrX_+_33735898_33735993	2.72869	GLI1..3.p2	NM_028325|Zcchc12|72693|zinc finger, CCHC domain containing 12	BC049071|Zcchc12|72693|zinc finger, CCHC domain containing 12	BC055714|Zcchc12|72693|zinc finger, CCHC domain containing 12	AK012833|Zcchc12|72693|zinc finger, CCHC domain containing 12
mm9_v1_chr3_-_115417685_115417834	2.72067	GLI1..3.p2	BC051023|S1pr1|13609|sphingosine-1-phosphate receptor 1	AK146501|S1pr1|13609|sphingosine-1-phosphate receptor 1
mm9_v1_chr4_+_104829867_104829919	2.71919	GLI1..3.p2	AK159136|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr2_-_44717141_44717141	2.71691	GLI1..3.p2	AK054272|Gtdc1|227835|glycosyltransferase-like domain containing 1	NM_172662|Gtdc1|227835|glycosyltransferase-like domain containing 1
mm9_v1_chr5_-_124545776_124545806	2.70841	GLI1..3.p2	AK044140|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	AB093298|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	BC026455|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	AF216495|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	NM_019875|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9
mm9_v1_chr7_+_121862156_121862165	2.70732	GLI1..3.p2	BC111865|Calcb|116903|calcitonin-related polypeptide, beta	NM_054084|Calcb|116903|calcitonin-related polypeptide, beta	AK136518|Calcb|116903|calcitonin-related polypeptide, beta
mm9_v1_chr7_-_11080687_11080731	2.70426	GLI1..3.p2	BC050942|Zik1|22775|zinc finger protein interacting with K protein 1	BC067196|Zik1|22775|zinc finger protein interacting with K protein 1	AK159077|Zik1|22775|zinc finger protein interacting with K protein 1	AK146692|Zik1|22775|zinc finger protein interacting with K protein 1	U69133|Zik1|22775|zinc finger protein interacting with K protein 1	NM_009577|Zik1|22775|zinc finger protein interacting with K protein 1
mm9_v1_chr6_-_122289630_122289670	2.69901	GLI1..3.p2	S73882|Phc1|13619|polyhomeotic-like 1 (Drosophila)	S73883|Phc1|13619|polyhomeotic-like 1 (Drosophila)	S73884|Phc1|13619|polyhomeotic-like 1 (Drosophila)	BC046535|Phc1|13619|polyhomeotic-like 1 (Drosophila)	AK167590|Phc1|13619|polyhomeotic-like 1 (Drosophila)
mm9_v1_chr12_+_3365147_3365223	2.69637	GLI1..3.p2	AK133649|Kif3c|16570|kinesin family member 3C	BC053053|Kif3c|16570|kinesin family member 3C
mm9_v1_chr7_+_4971977_4971977	2.69334	GLI1..3.p2	AK154737|Zfp865|319748|zinc finger protein 865	NM_001033383|Zfp865|319748|zinc finger protein 865
mm9_v1_chr5_-_124545759_124545774	2.68413	GLI1..3.p2	BC053014|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9
mm9_v1_chr9_-_21875603_21875617	2.68344	GLI1..3.p2	AK089104|Zfp653|319601|zinc finger protein 653
mm9_v1_chr9_-_88333710_88333807	2.67267	GLI1..3.p2	AK046839|Snx14|244962|sorting nexin 14	AK049371|Snx14|244962|sorting nexin 14	AK082389|Snx14|244962|sorting nexin 14	BC080799|Snx14|244962|sorting nexin 14	NM_172926|Snx14|244962|sorting nexin 14
mm9_v1_chr5_-_114250360_114250424	2.66791	GLI1..3.p2	BC025600|Tmem119|231633|transmembrane protein 119	NM_146162|Tmem119|231633|transmembrane protein 119	AK078473|Tmem119|231633|transmembrane protein 119	AK170712|Tmem119|231633|transmembrane protein 119	AK135223|Tmem119|231633|transmembrane protein 119
mm9_v1_chr11_-_102417457_102417523	2.66402	GLI1..3.p2	AK135410|Gpatch8|237943|G patch domain containing 8	NM_001159492|Gpatch8|237943|G patch domain containing 8
mm9_v1_chr15_+_103333554_103333728	2.64758	GLI1..3.p2	L01695|Pde1b|18574|phosphodiesterase 1B, Ca2+-calmodulin dependent	NM_008800|Pde1b|18574|phosphodiesterase 1B, Ca2+-calmodulin dependent
mm9_v1_chr11_-_68666432_68666614	2.61777	GLI1..3.p2	AK011168|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)	AF290472|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)	AK146029|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)	BC046796|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)
mm9_v1_chr1_+_164569280_164569299	2.61227	GLI1..3.p2	NM_010865|Myoc|17926|myocilin	AK144395|Myoc|17926|myocilin	AB013592|Myoc|17926|myocilin	AF039869|Myoc|17926|myocilin
mm9_v1_chr17_-_25922267_25922279	2.61001	GLI1..3.p2	AK005274|Haghl|68977|hydroxyacylglutathione hydrolase-like	NM_026897|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK079632|Haghl|68977|hydroxyacylglutathione hydrolase-like
mm9_v1_chr9_+_103014279_103014299	2.60478	GLI1..3.p2	AK082732|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chrX_-_7151185_7151245	2.60369	GLI1..3.p2	BC138137|Ppp1r3f|54646|protein phosphatase 1, regulatory (inhibitor) subunit 3F	BC138138|Ppp1r3f|54646|protein phosphatase 1, regulatory (inhibitor) subunit 3F	AF229644|Ppp1r3f|54646|protein phosphatase 1, regulatory (inhibitor) subunit 3F	NM_138605|Ppp1r3f|54646|protein phosphatase 1, regulatory (inhibitor) subunit 3F
mm9_v1_chr10_-_49508472_49508559	2.60209	GLI1..3.p2	D10054|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	AK141539|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	NM_001111268|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	NM_010349|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm9_v1_chr6_+_56782073_56782148	2.59776	GLI1..3.p2	AF279263|Fkbp9|27055|FK506 binding protein 9	BC026133|Fkbp9|27055|FK506 binding protein 9	AF090334|Fkbp9|27055|FK506 binding protein 9
mm9_v1_chr9_+_20986009_20986074	2.5958	GLI1..3.p2	BC044786|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chr17_+_24641034_24641180	2.59383	GLI1..3.p2	AK049987|Caskin1|268932|CASK interacting protein 1
mm9_v1_chr1_+_75476106_75476188	2.58854	GLI1..3.p2	NM_177056|Tmem198|319998|transmembrane protein 198	BC059868|Tmem198|319998|transmembrane protein 198	AK038957|Tmem198|319998|transmembrane protein 198	AK082334|Tmem198|319998|transmembrane protein 198
mm9_v1_chr3_+_87422672_87422672	2.57553	GLI1..3.p2	BC079565|Arhgef11|213498|Rho guanine nucleotide exchange factor (GEF) 11	NM_001003912|Arhgef11|213498|Rho guanine nucleotide exchange factor (GEF) 11
mm9_v1_chr15_+_99055291_99055406	2.57089	GLI1..3.p2	BC141013|Kcnh3|16512|potassium voltage-gated channel, subfamily H (eag-related), member 3	BC145145|Kcnh3|16512|potassium voltage-gated channel, subfamily H (eag-related), member 3	AY380579|Kcnh3|16512|potassium voltage-gated channel, subfamily H (eag-related), member 3	NM_010601|Kcnh3|16512|potassium voltage-gated channel, subfamily H (eag-related), member 3
mm9_v1_chr18_+_45719464_45719553	2.57042	GLI1..3.p2	AK087908|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK050390|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr6_+_86799460_86799754	2.56234	GLI1..3.p2	AK147363|Aak1|269774|AP2 associated kinase 1	NM_001040106|Aak1|269774|AP2 associated kinase 1	NM_177762|Aak1|269774|AP2 associated kinase 1	AK158879|Aak1|269774|AP2 associated kinase 1	BC141176|Aak1|269774|AP2 associated kinase 1
mm9_v1_chr3_+_84619399_84619498	2.54535	GLI1..3.p2	BC085184|Fbxw7|50754|F-box and WD-40 domain protein 7	BC060620|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177773|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chrX_+_71550301_71550377	2.54158	GLI1..3.p2	NM_010273|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1
mm9_v1_chr6_+_71443871_71443920	2.53671	GLI1..3.p2	D76445|Rnf103|22644|ring finger protein 103	NM_009543|Rnf103|22644|ring finger protein 103	AK168644|Rnf103|22644|ring finger protein 103	AK146898|Rnf103|22644|ring finger protein 103
mm9_v1_chr11_-_48630854_48630892	2.52989	GLI1..3.p2	BC041780|Trim41|211007|tripartite motif-containing 41	BC031905|Trim41|211007|tripartite motif-containing 41	NM_145377|Trim41|211007|tripartite motif-containing 41
mm9_v1_chr1_-_75475320_75475722	2.52893	GLI1..3.p2	AK160734|Chpf|74241|chondroitin polymerizing factor	AK177663|Chpf|74241|chondroitin polymerizing factor	AK187637|Chpf|74241|chondroitin polymerizing factor	AK190649|Chpf|74241|chondroitin polymerizing factor	BC030889|Chpf|74241|chondroitin polymerizing factor	AK006466|Chpf|74241|chondroitin polymerizing factor	AK155424|Chpf|74241|chondroitin polymerizing factor
mm9_v1_chr6_-_35489703_35489856	2.52882	GLI1..3.p2	AK151106|Mtpn|14489|myotrophin	AK151147|Mtpn|14489|myotrophin	AK151564|Mtpn|14489|myotrophin	AK152317|Mtpn|14489|myotrophin	AK151687|Mtpn|14489|myotrophin	AK152272|Mtpn|14489|myotrophin	BC043084|Mtpn|14489|myotrophin	AK049398|Mtpn|14489|myotrophin	AK146473|Mtpn|14489|myotrophin	AK145755|Mtpn|14489|myotrophin	D78188|Mtpn|14489|myotrophin	AK002620|Mtpn|14489|myotrophin	AK083888|Mtpn|14489|myotrophin	BC054811|Mtpn|14489|myotrophin	AK150750|Mtpn|14489|myotrophin	AK132029|Mtpn|14489|myotrophin	AK151640|Mtpn|14489|myotrophin	AK151485|Mtpn|14489|myotrophin	AK028027|Mtpn|14489|myotrophin	U20290|Mtpn|14489|myotrophin	AK146305|Mtpn|14489|myotrophin
mm9_v1_chr9_+_21397379_21397470	2.51789	GLI1..3.p2	AK088045|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	AK089121|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	BC025883|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	AK034762|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene
mm9_v1_chr6_-_90612275_90612375	2.51394	GLI1..3.p2	AK044711|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr7_-_116895708_116895795	2.49698	GLI1..3.p2	AK009147|Tmem9b|56786|TMEM9 domain family, member B	AK077253|Tmem9b|56786|TMEM9 domain family, member B	AK007430|Tmem9b|56786|TMEM9 domain family, member B	BC002208|Tmem9b|56786|TMEM9 domain family, member B	NM_020050|Tmem9b|56786|TMEM9 domain family, member B	AK147127|Tmem9b|56786|TMEM9 domain family, member B
mm9_v1_chrX_+_71550562_71550629	2.4956	GLI1..3.p2	AK156224|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK036969|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK028880|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK171216|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	BC025606|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK032869|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	BC037598|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1
mm9_v1_chr7_+_28043932_28043952	2.49179	GLI1..3.p2	BC098097|Numbl|18223|numb-like	BC068116|Numbl|18223|numb-like
mm9_v1_chr17_-_25922419_25922537	2.48699	GLI1..3.p2	BC083322|Haghl|68977|hydroxyacylglutathione hydrolase-like	BC005586|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK047517|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK034798|Haghl|68977|hydroxyacylglutathione hydrolase-like	BC030466|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK032999|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK080454|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK154248|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK012748|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK021220|Haghl|68977|hydroxyacylglutathione hydrolase-like
mm9_v1_chr5_-_150438856_150438925	2.48459	GLI1..3.p2	AK165046|Hsph1|15505|heat shock 105kDa/110kDa protein 1	AK160824|Hsph1|15505|heat shock 105kDa/110kDa protein 1	NM_013559|Hsph1|15505|heat shock 105kDa/110kDa protein 1
mm9_v1_chr9_+_20673178_20673179	2.46676	GLI1..3.p2	AK034516|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene
mm9_v1_chr13_-_95055235_95055506	2.46119	GLI1..3.p2	BC034283|Scamp1|107767|secretory carrier membrane protein 1	NM_029153|Scamp1|107767|secretory carrier membrane protein 1	AK135058|Scamp1|107767|secretory carrier membrane protein 1	AK154671|Scamp1|107767|secretory carrier membrane protein 1	AK170343|Scamp1|107767|secretory carrier membrane protein 1
mm9_v1_chr9_+_45646611_45646685	2.46095	GLI1..3.p2	NM_001145947|Bace1|23821|beta-site APP cleaving enzyme 1	NM_011792|Bace1|23821|beta-site APP cleaving enzyme 1	AK033112|Bace1|23821|beta-site APP cleaving enzyme 1	AK041285|Bace1|23821|beta-site APP cleaving enzyme 1	AK080498|Bace1|23821|beta-site APP cleaving enzyme 1	AK082317|Bace1|23821|beta-site APP cleaving enzyme 1	AK163583|Bace1|23821|beta-site APP cleaving enzyme 1	AK046175|Bace1|23821|beta-site APP cleaving enzyme 1	AK082230|Bace1|23821|beta-site APP cleaving enzyme 1	AK049626|Bace1|23821|beta-site APP cleaving enzyme 1	AF190726|Bace1|23821|beta-site APP cleaving enzyme 1	AK014464|Bace1|23821|beta-site APP cleaving enzyme 1	BC048189|Bace1|23821|beta-site APP cleaving enzyme 1
mm9_v1_chr2_-_165709697_165709718	2.45957	GLI1..3.p2	AK003657|Zmynd8|228880|zinc finger, MYND-type containing 8
mm9_v1_chr16_-_30550494_30550593	2.4508	GLI1..3.p2	BC080307|Tmem44|224090|transmembrane protein 44
mm9_v1_chr17_-_23701091_23701154	2.45043	GLI1..3.p2	AK147992|Zfp213|449521|zinc finger protein 213	BC038178|Zfp213|449521|zinc finger protein 213	AK039822|6330415G19Rik|320020|RIKEN cDNA 6330415G19 gene
mm9_v1_chr2_-_120178819_120178881	2.44352	GLI1..3.p2	BC007479|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281050|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281051|Vps39|269338|vacuolar protein sorting 39 (yeast)	AB028844|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK141424|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK038824|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK042253|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK154103|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK170831|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK171008|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK159889|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK160109|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK084743|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_147153|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_178851|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK140041|Vps39|269338|vacuolar protein sorting 39 (yeast)
mm9_v1_chr9_+_103014463_103014489	2.43656	GLI1..3.p2	AB232597|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr13_+_54472705_54472742	2.43645	GLI1..3.p2	NM_009946|Cplx2|12890|complexin 2
mm9_v1_chr9_-_108208272_108208302	2.42705	GLI1..3.p2	BC019397|Tcta|102791|T-cell leukemia translocation altered gene	NM_133986|Tcta|102791|T-cell leukemia translocation altered gene
mm9_v1_chr13_+_34967499_34967514	2.42022	GLI1..3.p2	AB516304|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm9_v1_chr16_-_45724422_45724643	2.41951	GLI1..3.p2	BC043027|Tagln3|56370|transgelin 3	AB031291|Tagln3|56370|transgelin 3	AK013484|Tagln3|56370|transgelin 3	BC055338|Tagln3|56370|transgelin 3	NM_019754|Tagln3|56370|transgelin 3
mm9_v1_chrX_+_7215705_7215836	2.40973	GLI1..3.p2	NM_009305|Syp|20977|synaptophysin	AK034291|Syp|20977|synaptophysin	AK043756|Syp|20977|synaptophysin	AK090259|Syp|20977|synaptophysin	BC052354|Syp|20977|synaptophysin	BC014823|Syp|20977|synaptophysin	X95818|Syp|20977|synaptophysin
mm9_v1_chr17_+_43526389_43526484	2.40514	GLI1..3.p2	NM_001081178|Gpr116|224792|G protein-coupled receptor 116
mm9_v1_chrX_-_71126088_71126172	2.40042	GLI1..3.p2	BC056988|L1cam|16728|L1 cell adhesion molecule	AK139407|L1cam|16728|L1 cell adhesion molecule	NM_008478|L1cam|16728|L1 cell adhesion molecule
mm9_v1_chr19_-_31839462_31839522	2.40016	GLI1..3.p2	AK051624|Prkg1|19091|protein kinase, cGMP-dependent, type I	AK083991|Prkg1|19091|protein kinase, cGMP-dependent, type I	NM_001013833|Prkg1|19091|protein kinase, cGMP-dependent, type I
mm9_v1_chrX_-_104598651_104598723	2.39884	GLI1..3.p2	AK135229|Itm2a|16431|integral membrane protein 2A	BC031420|Itm2a|16431|integral membrane protein 2A	AK051956|Itm2a|16431|integral membrane protein 2A	AK167351|Itm2a|16431|integral membrane protein 2A	L38971|Itm2a|16431|integral membrane protein 2A	NM_008409|Itm2a|16431|integral membrane protein 2A
mm9_v1_chr7_-_51562263_51562328	2.39795	GLI1..3.p2	AB009245|Clec11a|20256|C-type lectin domain family 11, member a	BC002001|Clec11a|20256|C-type lectin domain family 11, member a	NM_009131|Clec11a|20256|C-type lectin domain family 11, member a
mm9_v1_chr8_-_126957835_126957835	2.39548	GLI1..3.p2	NM_171824|Pgbd5|209966|piggyBac transposable element derived 5
mm9_v1_chr9_-_21875784_21875847	2.39037	GLI1..3.p2	AY072705|Zfp653|319601|zinc finger protein 653	BC038037|Zfp653|319601|zinc finger protein 653	NM_177318|Zfp653|319601|zinc finger protein 653	AK171735|Zfp653|319601|zinc finger protein 653
mm9_v1_chr4_-_82666973_82667005	2.39012	GLI1..3.p2	BC138427|Frem1|329872|Fras1 related extracellular matrix protein 1	BC145274|Frem1|329872|Fras1 related extracellular matrix protein 1	AJ616838|Frem1|329872|Fras1 related extracellular matrix protein 1	NM_177863|Frem1|329872|Fras1 related extracellular matrix protein 1
mm9_v1_chr5_+_149114763_149114791	2.38475	GLI1..3.p2	AK019985|Mtus2|77521|microtubule associated tumor suppressor candidate 2
mm9_v1_chr5_-_44492908_44492976	2.38444	GLI1..3.p2	AF026269|Prom1|19126|prominin 1	AF039663|Prom1|19126|prominin 1	NM_001163577|Prom1|19126|prominin 1	NM_008935|Prom1|19126|prominin 1
mm9_v1_chr9_+_120058842_120058868	2.38401	GLI1..3.p2	AK013799|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK019323|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK028057|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK083103|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK140055|Mobp|17433|myelin-associated oligodendrocytic basic protein	BC048492|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_001039364|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_001039365|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_008614|Mobp|17433|myelin-associated oligodendrocytic basic protein
mm9_v1_chr5_-_150438704_150438747	2.37862	GLI1..3.p2	D67016|Hsph1|15505|heat shock 105kDa/110kDa protein 1	AK083179|Hsph1|15505|heat shock 105kDa/110kDa protein 1
mm9_v1_chr9_-_77956353_77956477	2.36387	GLI1..3.p2	AK018482|Fbxo9|71538|f-box protein 9	AB041585|Fbxo9|71538|f-box protein 9	BC020074|Fbxo9|71538|f-box protein 9	NM_023605|Fbxo9|71538|f-box protein 9
mm9_v1_chrX_-_93152262_93152300	2.36096	GLI1..3.p2	AK089160|Las1l|76130|LAS1-like (S. cerevisiae)	NM_152822|Las1l|76130|LAS1-like (S. cerevisiae)	AK163919|Las1l|76130|LAS1-like (S. cerevisiae)
mm9_v1_chr4_+_106233807_106233880	2.3588	GLI1..3.p2	AK017937|Dhcr24|74754|24-dehydrocholesterol reductase
mm9_v1_chr6_-_82889660_82889681	2.35611	GLI1..3.p2	AK158292|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC139232|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm9_v1_chr19_+_4099973_4100180	2.34897	GLI1..3.p2	AK155377|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AF006467|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	NM_001136078|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK177924|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK179862|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK181080|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK188056|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK188611|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK208861|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK210105|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK210471|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK212060|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK187966|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1
mm9_v1_chr11_-_3309227_3309253	2.34839	GLI1..3.p2	NM_010718|Limk2|16886|LIM motif-containing protein kinase 2
mm9_v1_chr10_+_85763156_85763226	2.34788	GLI1..3.p2	NM_011595|Timp3|21859|tissue inhibitor of metalloproteinase 3
mm9_v1_chr3_+_95428870_95428903	2.3404	GLI1..3.p2	AK011334|Ensa|56205|endosulfine alpha	AK019170|Ensa|56205|endosulfine alpha	NM_001026212|Ensa|56205|endosulfine alpha	NM_019561|Ensa|56205|endosulfine alpha
mm9_v1_chr18_+_39152852_39152929	2.34035	GLI1..3.p2	AK129176|Arhgap26|71302|Rho GTPase activating protein 26	BC141394|Arhgap26|71302|Rho GTPase activating protein 26
mm9_v1_chrX_-_148776674_148776969	2.33783	GLI1..3.p2	BC004006|Tspyl2|52808|TSPY-like 2	BC043694|Tspyl2|52808|TSPY-like 2	AY273809|Tspyl2|52808|TSPY-like 2	BC054393|Tspyl2|52808|TSPY-like 2	AK018700|Tspyl2|52808|TSPY-like 2
mm9_v1_chr7_+_51080819_51080819	2.33695	GLI1..3.p2	NM_011177|Klk6|19144|kallikrein related-peptidase 6	Y18723|Klk6|19144|kallikrein related-peptidase 6
mm9_v1_chr15_+_101974792_101974939	2.3357	GLI1..3.p2	X81584|Igfbp6|16012|insulin-like growth factor binding protein 6	BC012723|Igfbp6|16012|insulin-like growth factor binding protein 6	AK157982|Igfbp6|16012|insulin-like growth factor binding protein 6
mm9_v1_chr6_-_113481546_113481673	2.33075	GLI1..3.p2	AK020058|Tmem111|66087|transmembrane protein 111	AK046264|Tmem111|66087|transmembrane protein 111	BC004641|Tmem111|66087|transmembrane protein 111	AK075595|Tmem111|66087|transmembrane protein 111	NM_175101|Tmem111|66087|transmembrane protein 111	AK164779|Tmem111|66087|transmembrane protein 111
mm9_v1_chr2_-_144376513_144376606	2.31928	GLI1..3.p2	AF039563|Rbbp9|26450|retinoblastoma binding protein 9	BC050201|Rbbp9|26450|retinoblastoma binding protein 9	AK017606|Rbbp9|26450|retinoblastoma binding protein 9	BC011107|Rbbp9|26450|retinoblastoma binding protein 9	BC147814|Rbbp9|26450|retinoblastoma binding protein 9	BC147815|Rbbp9|26450|retinoblastoma binding protein 9	AK076944|Rbbp9|26450|retinoblastoma binding protein 9	NM_015754|Rbbp9|26450|retinoblastoma binding protein 9
mm9_v1_chr18_+_37098858_37098971	2.3161	GLI1..3.p2	BC030897|Pcdha2|353234|protocadherin alpha 2	NM_198117|Pcdha2|353234|protocadherin alpha 2	BC141390|Pcdha2|353234|protocadherin alpha 2	AY013760|Pcdha2|353234|protocadherin alpha 2
mm9_v1_chr11_-_69418965_69419018	2.31292	GLI1..3.p2	X16645|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide
mm9_v1_chr7_+_28043740_28043802	2.30524	GLI1..3.p2	NM_010950|Numbl|18223|numb-like
mm9_v1_chr2_-_121181055_121181098	2.30398	GLI1..3.p2	AK160847|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1
mm9_v1_chr9_-_77956833_77956859	2.29966	GLI1..3.p2	AK077607|Fbxo9|71538|f-box protein 9	NM_001081490|Fbxo9|71538|f-box protein 9
mm9_v1_chr7_+_112706171_112706777	2.29306	GLI1..3.p2	AK205297|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK206661|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK214733|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK212303|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK182658|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK205584|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK190375|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK195882|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK180590|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK205699|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal
mm9_v1_chr6_-_136123521_136123528	2.29277	GLI1..3.p2	AJ459261|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)	AJ459262|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)	AJ459263|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)	AK002963|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)	NM_008171|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm9_v1_chr14_+_105658009_105658029	2.28959	GLI1..3.p2	AK049678|Ndfip2|76273|Nedd4 family interacting protein 2
mm9_v1_chr4_+_106233690_106233781	2.28956	GLI1..3.p2	BC019797|Dhcr24|74754|24-dehydrocholesterol reductase	AY039762|Dhcr24|74754|24-dehydrocholesterol reductase
mm9_v1_chr2_-_180869947_180869970	2.28756	GLI1..3.p2	AK161558|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2
mm9_v1_chr18_+_36446680_36446818	2.28677	GLI1..3.p2	AF017631|Pura|19290|purine rich element binding protein A
mm9_v1_chr9_-_21875719_21875761	2.28657	GLI1..3.p2	AK046492|Zfp653|319601|zinc finger protein 653	AK157635|Zfp653|319601|zinc finger protein 653
mm9_v1_chr5_+_93522512_93522577	2.27978	GLI1..3.p2	AK028475|Sept11|52398|septin 11	BC031456|Sept11|52398|septin 11
mm9_v1_chr10_-_126626878_126627109	2.26379	GLI1..3.p2	AK158684|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	NM_001166413|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	AF487515|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	AK010452|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	BC041113|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	NM_028027|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25
mm9_v1_chr17_+_43705510_43705663	2.26281	GLI1..3.p2	AK005210|Pla2g7|27226|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	AK155678|Pla2g7|27226|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	BC010726|Pla2g7|27226|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	U34277|Pla2g7|27226|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	AK005158|Pla2g7|27226|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
mm9_v1_chr15_-_76701806_76701851	2.26234	GLI1..3.p2	AK153967|Zfp251|71591|zinc finger protein 251	AK047148|Zfp251|71591|zinc finger protein 251	AK140082|Zfp251|71591|zinc finger protein 251
mm9_v1_chrX_+_71550669_71550710	2.26162	GLI1..3.p2	BC013758|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AF251042|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK209882|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK179895|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK205324|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK206024|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK206073|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1
mm9_v1_chr18_+_45719101_45719122	2.25877	GLI1..3.p2	AK149082|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK039033|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr17_+_25854439_25854493	2.25812	GLI1..3.p2	AB030194|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13	BC048431|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13	BC059712|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13
mm9_v1_chr14_-_63796620_63796725	2.2499	GLI1..3.p2	AK168629|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	BC054722|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	NM_010191|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	D29016|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	AK162294|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	BC138301|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	AK158633|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	BC138302|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	AK076062|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	AK146766|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	AK169317|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1
mm9_v1_chr3_-_104315750_104315755	2.2482	GLI1..3.p2	AK173030|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chr4_-_47487166_47487217	2.23679	GLI1..3.p2	AB161357|Alg2|56737|asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)	AB041604|Alg2|56737|asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)	BC051951|Alg2|56737|asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)	BC052411|Alg2|56737|asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)	AK004997|Alg2|56737|asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)	AK010673|Alg2|56737|asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)
mm9_v1_chr1_-_72921438_72921462	2.23238	GLI1..3.p2	BC057447|Igfbp5|16011|insulin-like growth factor binding protein 5	NM_010518|Igfbp5|16011|insulin-like growth factor binding protein 5	AK142108|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr1_+_75518103_75518162	2.23035	GLI1..3.p2	NM_027886|Stk11ip|71728|serine/threonine kinase 11 interacting protein	AK165911|Stk11ip|71728|serine/threonine kinase 11 interacting protein	BC061635|Stk11ip|71728|serine/threonine kinase 11 interacting protein	AK156122|Stk11ip|71728|serine/threonine kinase 11 interacting protein	AK004757|Stk11ip|71728|serine/threonine kinase 11 interacting protein
mm9_v1_chr17_-_64681166_64681295	2.22902	GLI1..3.p2	AK122282|Pja2|224938|praja 2, RING-H2 motif containing	AK168371|Pja2|224938|praja 2, RING-H2 motif containing	AK144586|Pja2|224938|praja 2, RING-H2 motif containing	NM_001025309|Pja2|224938|praja 2, RING-H2 motif containing	NM_144859|Pja2|224938|praja 2, RING-H2 motif containing	AK164025|Pja2|224938|praja 2, RING-H2 motif containing	AF493070|Pja2|224938|praja 2, RING-H2 motif containing
mm9_v1_chr12_+_4082573_4082658	2.22363	GLI1..3.p2	NM_153082|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	BC051140|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	AK049300|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	BC042643|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27
mm9_v1_chr1_+_12682572_12682637	2.2236	GLI1..3.p2	AK028285|Sulf1|240725|sulfatase 1	AK045002|Sulf1|240725|sulfatase 1
mm9_v1_chr11_+_94871181_94871224	2.22177	GLI1..3.p2	AK049753|Samd14|217125|sterile alpha motif domain containing 14	NM_146025|Samd14|217125|sterile alpha motif domain containing 14	AK047184|Samd14|217125|sterile alpha motif domain containing 14
mm9_v1_chr5_+_3803180_3803451	2.22133	GLI1..3.p2	AK088956|Krit1|79264|KRIT1, ankyrin repeat containing	AK008150|Krit1|79264|KRIT1, ankyrin repeat containing	AK082175|Krit1|79264|KRIT1, ankyrin repeat containing	AK085107|Krit1|79264|KRIT1, ankyrin repeat containing	AK144667|Krit1|79264|KRIT1, ankyrin repeat containing	AK172215|Krit1|79264|KRIT1, ankyrin repeat containing	AF310134|Krit1|79264|KRIT1, ankyrin repeat containing	BC054819|Krit1|79264|KRIT1, ankyrin repeat containing	AK039264|Krit1|79264|KRIT1, ankyrin repeat containing	BC016087|Krit1|79264|KRIT1, ankyrin repeat containing	BC141042|Krit1|79264|KRIT1, ankyrin repeat containing	BC085252|Krit1|79264|KRIT1, ankyrin repeat containing	AF306509|Krit1|79264|KRIT1, ankyrin repeat containing
mm9_v1_chr9_+_69137694_69137758	2.21727	GLI1..3.p2	AK155827|Rora|19883|RAR-related orphan receptor alpha	BC003757|Rora|19883|RAR-related orphan receptor alpha	S82720|Rora|19883|RAR-related orphan receptor alpha	AK149294|Rora|19883|RAR-related orphan receptor alpha
mm9_v1_chr11_-_6375845_6375919	2.21689	GLI1..3.p2	AF017630|Purb|19291|purine rich element binding protein B	NM_011221|Purb|19291|purine rich element binding protein B
mm9_v1_chr3_-_107499460_107499466	2.21398	GLI1..3.p2	NM_145542|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1
mm9_v1_chr11_-_65601774_65601862	2.21132	GLI1..3.p2	AK139777|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK044534|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK044698|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK036928|Map2k4|26398|mitogen-activated protein kinase kinase 4	NM_009157|Map2k4|26398|mitogen-activated protein kinase kinase 4
mm9_v1_chr15_+_99223377_99223451	2.20281	GLI1..3.p2	NM_001171034|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	NM_001171036|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	NM_026669|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK019865|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK050299|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK088030|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK088683|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK139901|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK159380|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK166935|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK036782|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK036994|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK049604|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK050323|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	BC005588|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6
mm9_v1_chr17_+_23810567_23810574	2.19959	GLI1..3.p2	AK013438|Hcfc1r1|353502|host cell factor C1 regulator 1 (XPO1-dependent)	NM_181821|Hcfc1r1|353502|host cell factor C1 regulator 1 (XPO1-dependent)
mm9_v1_chr18_+_37637421_37637642	2.19594	GLI1..3.p2	NM_053141|Pcdhb16|93887|protocadherin beta 16	AK030612|Pcdhb16|93887|protocadherin beta 16	AK036829|Pcdhb16|93887|protocadherin beta 16	BC115720|Pcdhb16|93887|protocadherin beta 16	BC116625|Pcdhb16|93887|protocadherin beta 16	AY013777|Pcdhb16|93887|protocadherin beta 16
mm9_v1_chr14_+_34736806_34736957	2.19121	GLI1..3.p2	L42114|Gdf10|14560|growth differentiation factor 10	S82648|Gdf10|14560|growth differentiation factor 10
mm9_v1_chr9_-_83003967_83004006	2.18965	GLI1..3.p2	
mm9_v1_chr6_+_38613031_38613110	2.18709	GLI1..3.p2	NM_001101507|Clec2l|665180|C-type lectin domain family, member L
mm9_v1_chr7_-_89079335_89079355	2.18045	GLI1..3.p2	AK045542|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	NM_013886|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3
mm9_v1_chr9_-_21397188_21397310	2.17603	GLI1..3.p2	BC002282|Yipf2|74766|Yip1 domain family, member 2	NM_138303|Yipf2|74766|Yip1 domain family, member 2	BC003289|Yipf2|74766|Yip1 domain family, member 2	AK033705|Yipf2|74766|Yip1 domain family, member 2	AK133631|Yipf2|74766|Yip1 domain family, member 2	AK004959|Yipf2|74766|Yip1 domain family, member 2
mm9_v1_chr19_-_58528838_58529066	2.1753	GLI1..3.p2	AB000800|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	BC040251|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	BC054378|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	NM_010279|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	BC011532|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	AF015172|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1
mm9_v1_chr6_-_118429262_118429276	2.1569	GLI1..3.p2	AK007823|Zfp9|22750|zinc finger protein 9	AK029052|Zfp9|22750|zinc finger protein 9
mm9_v1_chrX_+_8469507_8469585	2.15646	GLI1..3.p2	AK046767|B630019K06Rik|102941|RIKEN cDNA B630019K06 gene	BC055780|B630019K06Rik|102941|RIKEN cDNA B630019K06 gene
mm9_v1_chr13_+_51228165_51228173	2.15552	GLI1..3.p2	AK166532|Spin1|20729|spindlin 1	AK163301|Spin1|20729|spindlin 1	AK136251|Spin1|20729|spindlin 1	NM_011462|Spin1|20729|spindlin 1	AK135847|Spin1|20729|spindlin 1	AK135933|Spin1|20729|spindlin 1	AK139899|Spin1|20729|spindlin 1	AK162171|Spin1|20729|spindlin 1	AK162195|Spin1|20729|spindlin 1	AK163308|Spin1|20729|spindlin 1	AK163382|Spin1|20729|spindlin 1	AK136233|Spin1|20729|spindlin 1	AK163293|Spin1|20729|spindlin 1	AK135816|Spin1|20729|spindlin 1	AK163263|Spin1|20729|spindlin 1	AK166528|Spin1|20729|spindlin 1	AK166677|Spin1|20729|spindlin 1	AK162258|Spin1|20729|spindlin 1
mm9_v1_chr5_-_72049479_72049546	2.15036	GLI1..3.p2	AK141571|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK159299|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK013727|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	NM_010251|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4
mm9_v1_chr4_+_15193231_15193387	2.14883	GLI1..3.p2	AK170682|Tmem64|100201|transmembrane protein 64	AK035894|Tmem64|100201|transmembrane protein 64	AK169861|Tmem64|100201|transmembrane protein 64
mm9_v1_chr18_-_35374531_35374610	2.14834	GLI1..3.p2	AK043173|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK046818|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK049920|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK043784|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2
mm9_v1_chr10_+_127162447_127162481	2.14375	GLI1..3.p2	NM_009312|Tac2|21334|tachykinin 2	BC031348|Tac2|21334|tachykinin 2	BC051476|Tac2|21334|tachykinin 2	AF186116|Tac2|21334|tachykinin 2
mm9_v1_chr19_-_7457485_7457515	2.14149	GLI1..3.p2	NM_001033139|AI846148|68229|expressed sequence AI846148	NM_001167831|AI846148|68229|expressed sequence AI846148
mm9_v1_chr1_-_174221511_174221528	2.12492	GLI1..3.p2	BC041774|Atp1a2|98660|ATPase, Na+/K+ transporting, alpha 2 polypeptide
mm9_v1_chr3_+_55586431_55586482	2.12409	GLI1..3.p2	NM_010750|Mab21l1|17116|mab-21-like 1 (C. elegans)	AK043552|Mab21l1|17116|mab-21-like 1 (C. elegans)	AF040945|Mab21l1|17116|mab-21-like 1 (C. elegans)	AF228913|Mab21l1|17116|mab-21-like 1 (C. elegans)	AK032114|Mab21l1|17116|mab-21-like 1 (C. elegans)	BC014750|Mab21l1|17116|mab-21-like 1 (C. elegans)
mm9_v1_chr15_+_101974616_101974616	2.12147	GLI1..3.p2	NM_008344|Igfbp6|16012|insulin-like growth factor binding protein 6
mm9_v1_chr17_+_24625530_24625580	2.11737	GLI1..3.p2	AK014376|Caskin1|268932|CASK interacting protein 1
mm9_v1_chr8_-_86118344_86118395	2.11707	GLI1..3.p2	AK013558|Tecr|106529|trans-2,3-enoyl-CoA reductase	AK002384|Tecr|106529|trans-2,3-enoyl-CoA reductase	AK010984|Tecr|106529|trans-2,3-enoyl-CoA reductase	BC019984|Tecr|106529|trans-2,3-enoyl-CoA reductase	AK020708|Tecr|106529|trans-2,3-enoyl-CoA reductase	NM_027179|Tecr|106529|trans-2,3-enoyl-CoA reductase	NM_134118|Tecr|106529|trans-2,3-enoyl-CoA reductase
mm9_v1_chr7_-_53435334_53435402	2.11673	GLI1..3.p2	BC141411|Abcc8|20927|ATP-binding cassette, sub-family C (CFTR/MRP), member 8	AK086472|Abcc8|20927|ATP-binding cassette, sub-family C (CFTR/MRP), member 8	NM_011510|Abcc8|20927|ATP-binding cassette, sub-family C (CFTR/MRP), member 8
mm9_v1_chr16_+_17276384_17276419	2.10876	GLI1..3.p2	NM_177473|Tmem191c|224019|transmembrane protein 191C	AK016675|Tmem191c|224019|transmembrane protein 191C
mm9_v1_chr4_-_142889372_142889476	2.1053	GLI1..3.p2	NM_010329|Pdpn|14726|podoplanin	AK158855|Pdpn|14726|podoplanin
mm9_v1_chr2_+_156301651_156301691	2.10044	GLI1..3.p2	AK122251|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr11_+_103510847_103510859	2.10044	GLI1..3.p2	BC147064|Rprml|104582|reprimo-like	BC147065|Rprml|104582|reprimo-like
mm9_v1_chr2_+_155207542_155207579	2.09631	GLI1..3.p2	AK170132|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr3_-_127111968_127111977	2.09575	GLI1..3.p2	AK036018|Ank2|109676|ankyrin 2, brain
mm9_v1_chr7_+_26102182_26102182	2.08385	GLI1..3.p2	EU723517|Megf8|269878|multiple EGF-like-domains 8	NM_001160400|Megf8|269878|multiple EGF-like-domains 8
mm9_v1_chr10_+_74523775_74523878	2.08249	GLI1..3.p2	BC131682|Bcr|110279|breakpoint cluster region
mm9_v1_chr12_-_77811533_77811533	2.07638	GLI1..3.p2	AK147299|Spnb1|20741|spectrin beta 1	NM_013675|Spnb1|20741|spectrin beta 1
mm9_v1_chr6_-_118429289_118429292	2.07596	GLI1..3.p2	NM_011763|Zfp9|22750|zinc finger protein 9
mm9_v1_chr11_-_115281230_115281278	2.072	GLI1..3.p2	BC016547|Atp5h|71679|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d	BC081431|Atp5h|71679|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d	AK002376|Atp5h|71679|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d	NM_027862|Atp5h|71679|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d
mm9_v1_chr8_-_86118291_86118339	2.06356	GLI1..3.p2	AK179321|Tecr|106529|trans-2,3-enoyl-CoA reductase	AK010513|Tecr|106529|trans-2,3-enoyl-CoA reductase	BC094046|Tecr|106529|trans-2,3-enoyl-CoA reductase
mm9_v1_chr15_-_76701864_76701885	2.06182	GLI1..3.p2	BC059071|Zfp251|71591|zinc finger protein 251	NM_001007568|Zfp251|71591|zinc finger protein 251
mm9_v1_chr13_-_21622917_21622982	2.06104	GLI1..3.p2	BC050152|Zfp192|93681|zinc finger protein 192	AK032718|Zfp192|93681|zinc finger protein 192	AK134299|Zfp192|93681|zinc finger protein 192	NM_139141|Zfp192|93681|zinc finger protein 192
mm9_v1_chr1_-_75475845_75475926	2.06026	GLI1..3.p2	BC071273|Chpf|74241|chondroitin polymerizing factor	BC057050|Chpf|74241|chondroitin polymerizing factor	BC060598|Chpf|74241|chondroitin polymerizing factor
mm9_v1_chr13_+_55471092_55471131	2.05713	GLI1..3.p2	NM_016758|Rgs14|51791|regulator of G-protein signaling 14	BC030321|Rgs14|51791|regulator of G-protein signaling 14
mm9_v1_chr14_+_28242002_28242052	2.05697	GLI1..3.p2	AK016751|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	AK044563|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	NM_001114879|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	NM_028945|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed
mm9_v1_chr11_+_87574041_87574047	2.05694	GLI1..3.p2	AK043747|Bzrap1|207777|benzodiazepine receptor associated protein 1	NM_172449|Bzrap1|207777|benzodiazepine receptor associated protein 1
mm9_v1_chr17_+_56465472_56465518	2.05415	GLI1..3.p2	NM_172132|Kdm4b|193796|lysine (K)-specific demethylase 4B	AK078074|Kdm4b|193796|lysine (K)-specific demethylase 4B	AK141879|Kdm4b|193796|lysine (K)-specific demethylase 4B	AK129233|Kdm4b|193796|lysine (K)-specific demethylase 4B	BC007145|Kdm4b|193796|lysine (K)-specific demethylase 4B	AK145151|Kdm4b|193796|lysine (K)-specific demethylase 4B
mm9_v1_chr17_-_14831233_14831243	2.04525	GLI1..3.p2	AK142552|Thbs2|21826|thrombospondin 2
mm9_v1_chr9_+_20836560_20836569	2.04404	GLI1..3.p2	AK135040|Icam5|15898|intercellular adhesion molecule 5, telencephalin
mm9_v1_chr7_+_19766490_19766570	2.04206	GLI1..3.p2	NM_001162996|Eml2|72205|echinoderm microtubule associated protein like 2	NM_028153|Eml2|72205|echinoderm microtubule associated protein like 2	BC055476|Eml2|72205|echinoderm microtubule associated protein like 2	AK005562|Eml2|72205|echinoderm microtubule associated protein like 2
mm9_v1_chr18_+_45719732_45719807	2.03355	GLI1..3.p2	AY123778|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	BC125475|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	BC137656|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AF357240|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AF533008|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AY280964|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	EU478850|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	NM_080465|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr9_+_20836481_20836546	2.02787	GLI1..3.p2	NM_008319|Icam5|15898|intercellular adhesion molecule 5, telencephalin	BC113140|Icam5|15898|intercellular adhesion molecule 5, telencephalin	U06483|Icam5|15898|intercellular adhesion molecule 5, telencephalin
mm9_v1_chr5_+_76958331_76958438	2.02703	GLI1..3.p2	BC064811|Exoc1|69940|exocyst complex component 1	NM_027270|Exoc1|69940|exocyst complex component 1	AK042620|Exoc1|69940|exocyst complex component 1	AK155980|Exoc1|69940|exocyst complex component 1	BC087543|Exoc1|69940|exocyst complex component 1	BC024678|Exoc1|69940|exocyst complex component 1
mm9_v1_chr1_-_136131981_136132033	2.02665	GLI1..3.p2	NM_001008533|Adora1|11539|adenosine A1 receptor	AK038774|Adora1|11539|adenosine A1 receptor	NM_001039510|Adora1|11539|adenosine A1 receptor	AK134532|Adora1|11539|adenosine A1 receptor
mm9_v1_chr7_+_87406066_87406184	2.01649	GLI1..3.p2	NM_031375|Ngrn|83485|neugrin, neurite outgrowth associated	AK083330|Ngrn|83485|neugrin, neurite outgrowth associated	AK144756|Ngrn|83485|neugrin, neurite outgrowth associated	BC004034|Ngrn|83485|neugrin, neurite outgrowth associated	AK146059|Ngrn|83485|neugrin, neurite outgrowth associated	AB047544|Ngrn|83485|neugrin, neurite outgrowth associated
mm9_v1_chr5_+_108796754_108796809	2.01515	GLI1..3.p2	AK031816|Gm10419|100038441|predicted gene 10419
mm9_v1_chr5_+_111847185_111847185	2.01079	GLI1..3.p2	NM_001081235|Mn1|433938|meningioma 1
mm9_v1_chr3_+_96049419_96049503	2.00607	GLI1..3.p2	BC089519|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC147778|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC147781|Hist2h2aa1|15267|histone cluster 2, H2aa1	AK002725|Hist2h2aa1|15267|histone cluster 2, H2aa1	AK006728|Hist2h2aa1|15267|histone cluster 2, H2aa1	NM_013549|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC010564|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC053966|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC062255|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC080809|Hist2h3c1|15077|histone cluster 2, H3c1	Z30940|Hist2h2aa1|15267|histone cluster 2, H2aa1	NM_178212|Hist2h2aa2|319192|histone cluster 2, H2aa2
mm9_v1_chr9_-_102256962_102257026	2.00312	GLI1..3.p2	BC057301|Ephb1|270190|Eph receptor B1	AK135018|Ephb1|270190|Eph receptor B1	AK033966|Ephb1|270190|Eph receptor B1	AK036211|Ephb1|270190|Eph receptor B1	AK082061|Ephb1|270190|Eph receptor B1	AK039530|Ephb1|270190|Eph receptor B1	NM_001168296|Ephb1|270190|Eph receptor B1	NM_173447|Ephb1|270190|Eph receptor B1
mm9_v1_chr8_+_87560809_87560830	2.00283	GLI1..3.p2	AK154985|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	AK155760|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	NM_145390|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)
mm9_v1_chr9_-_56008819_56008825	1.99137	GLI1..3.p2	AK159418|Tspan3|56434|tetraspanin 3
mm9_v1_chr1_+_45402907_45402949	1.99022	GLI1..3.p2	AK029451|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr5_-_29704731_29704866	1.98446	GLI1..3.p2	AF190665|Lmbr1|56873|limb region 1	AF190666|Lmbr1|56873|limb region 1	BC016110|Lmbr1|56873|limb region 1	AK030631|Lmbr1|56873|limb region 1
mm9_v1_chr11_+_68901989_68902022	1.9835	GLI1..3.p2	AK090178|Vamp2|22318|vesicle-associated membrane protein 2
mm9_v1_chr7_-_133591146_133591163	1.97926	GLI1..3.p2	AK160497|Atp2a1|11937|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1
mm9_v1_chr14_+_105657889_105657939	1.97272	GLI1..3.p2	NM_001190989|Ndfip2|76273|Nedd4 family interacting protein 2	NM_029561|Ndfip2|76273|Nedd4 family interacting protein 2
mm9_v1_chr17_-_23701167_23701225	1.9704	GLI1..3.p2	NM_001033496|Zfp213|449521|zinc finger protein 213
mm9_v1_chr11_+_120582777_120582942	1.96788	GLI1..3.p2	AK150203|Rac3|170758|RAS-related C3 botulinum substrate 3	NM_133223|Rac3|170758|RAS-related C3 botulinum substrate 3	AK089930|Rac3|170758|RAS-related C3 botulinum substrate 3	BC117028|Rac3|170758|RAS-related C3 botulinum substrate 3	BC119041|Rac3|170758|RAS-related C3 botulinum substrate 3	AB040819|Rac3|170758|RAS-related C3 botulinum substrate 3	AY974601|Rac3|170758|RAS-related C3 botulinum substrate 3
mm9_v1_chr7_-_31230463_31230562	1.96743	GLI1..3.p2	BC106158|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	AK170818|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	AK160871|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	AK154992|Aplp1|11803|amyloid beta (A4) precursor-like protein 1
mm9_v1_chr17_+_36116889_36116901	1.96663	GLI1..3.p2	NM_008136|Gnl1|14670|guanine nucleotide binding protein-like 1
mm9_v1_chr6_-_25639812_25639825	1.96625	GLI1..3.p2	AK032525|Gpr37|14763|G protein-coupled receptor 37
mm9_v1_chr15_+_12754561_12754569	1.96468	GLI1..3.p2	NM_001130149|Drosha|14000|drosha, ribonuclease type III	NM_026799|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr11_-_96688959_96689060	1.96453	GLI1..3.p2	BC047283|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	AF071084|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	X78709|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr12_+_82732188_82732357	1.96377	GLI1..3.p2	AK172918|Ttc9|69480|tetratricopeptide repeat domain 9	BC028891|Ttc9|69480|tetratricopeptide repeat domain 9	AK133456|Ttc9|69480|tetratricopeptide repeat domain 9	NM_001033149|Ttc9|69480|tetratricopeptide repeat domain 9	BC139242|Ttc9|69480|tetratricopeptide repeat domain 9	BC139244|Ttc9|69480|tetratricopeptide repeat domain 9
mm9_v1_chr13_-_55671276_55671335	1.96041	GLI1..3.p2	AK173303|Fam193b|212483|family with sequence similarity 193, member B	BC025483|Fam193b|212483|family with sequence similarity 193, member B	NM_001162881|Fam193b|212483|family with sequence similarity 193, member B
mm9_v1_chr4_+_137283714_137283745	1.96041	GLI1..3.p2	AK078677|Rap1gap|110351|Rap1 GTPase-activating protein
mm9_v1_chr12_+_110779204_110779231	1.95824	GLI1..3.p2	AK145456|Meg3|17263|maternally expressed 3	AK155982|Meg3|17263|maternally expressed 3	AK157178|Meg3|17263|maternally expressed 3	Y13832|Meg3|17263|maternally expressed 3	BC094421|Meg3|17263|maternally expressed 3
mm9_v1_chr7_-_108080671_108080707	1.95266	GLI1..3.p2	NM_001081116|Arhgef17|207212|Rho guanine nucleotide exchange factor (GEF) 17
mm9_v1_chr9_+_123438868_123438899	1.94213	GLI1..3.p2	AK154759|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)
mm9_v1_chr7_-_88837850_88837850	1.94066	GLI1..3.p2	NM_001164087|Homer2|26557|homer homolog 2 (Drosophila)
mm9_v1_chrX_+_58962671_58962790	1.94041	GLI1..3.p2	AK137057|Ldoc1|434784|leucine zipper, down-regulated in cancer 1	BC052689|Ldoc1|434784|leucine zipper, down-regulated in cancer 1	NM_001018087|Ldoc1|434784|leucine zipper, down-regulated in cancer 1
mm9_v1_chr12_+_85455277_85455306	1.934	GLI1..3.p2	NM_028821|Dnalc1|105000|dynein, axonemal, light chain 1
mm9_v1_chrX_-_93152223_93152253	1.93282	GLI1..3.p2	BC032218|Las1l|76130|LAS1-like (S. cerevisiae)	AK018059|Las1l|76130|LAS1-like (S. cerevisiae)	BC141155|Las1l|76130|LAS1-like (S. cerevisiae)
mm9_v1_chr9_-_45714409_45714473	1.93198	GLI1..3.p2	BC094247|Rnf214|235315|ring finger protein 214	AK033867|Rnf214|235315|ring finger protein 214
mm9_v1_chr5_+_36100605_36100668	1.9273	GLI1..3.p2	AY274116|Ablim2|231148|actin-binding LIM protein 2	BC141125|Ablim2|231148|actin-binding LIM protein 2
mm9_v1_chr8_-_48374715_48374736	1.9246	GLI1..3.p2	AK129346|Stox2|71069|storkhead box 2
mm9_v1_chr4_-_133053867_133053924	1.92126	GLI1..3.p2	AY142705|Trnp1|69539|TMF1-regulated nuclear protein 1
mm9_v1_chr2_-_168567244_168567299	1.91693	GLI1..3.p2	BC094551|Atp9a|11981|ATPase, class II, type 9A	BC021814|Atp9a|11981|ATPase, class II, type 9A	NM_015731|Atp9a|11981|ATPase, class II, type 9A
mm9_v1_chrX_-_92853721_92853847	1.91274	GLI1..3.p2	AK129302|Zc4h2|245522|zinc finger, C4H2 domain containing	AK162005|Zc4h2|245522|zinc finger, C4H2 domain containing	AK086554|Zc4h2|245522|zinc finger, C4H2 domain containing	BC050850|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119285|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119311|Zc4h2|245522|zinc finger, C4H2 domain containing	BC079862|Zc4h2|245522|zinc finger, C4H2 domain containing	NM_001003916|Zc4h2|245522|zinc finger, C4H2 domain containing	AK155445|Zc4h2|245522|zinc finger, C4H2 domain containing
mm9_v1_chr10_+_127848744_127848813	1.91255	GLI1..3.p2	AK031657|Rnf41|67588|ring finger protein 41	AK034551|Rnf41|67588|ring finger protein 41	AK044103|Rnf41|67588|ring finger protein 41	AK032848|Rnf41|67588|ring finger protein 41	AK028551|Rnf41|67588|ring finger protein 41	AK077466|Rnf41|67588|ring finger protein 41
mm9_v1_chr11_+_79404713_79404722	1.91011	GLI1..3.p2	AK046734|Rab11fip4|268451|RAB11 family interacting protein 4 (class II)	NM_175543|Rab11fip4|268451|RAB11 family interacting protein 4 (class II)
mm9_v1_chr1_+_91476810_91476856	1.90983	GLI1..3.p2	AK147521|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm9_v1_chr2_+_31428244_31428356	1.90844	GLI1..3.p2	NM_001033389|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK166081|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK137035|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK145377|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK166478|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK167671|Fubp3|320267|far upstream element (FUSE) binding protein 3
mm9_v1_chrX_+_130939318_130939458	1.90467	GLI1..3.p2	AK038488|Drp2|13497|dystrophin related protein 2	NM_010078|Drp2|13497|dystrophin related protein 2	AK081426|Drp2|13497|dystrophin related protein 2	AK034383|Drp2|13497|dystrophin related protein 2	BC125345|Drp2|13497|dystrophin related protein 2	BC125347|Drp2|13497|dystrophin related protein 2
mm9_v1_chr10_-_31165691_31165726	1.88648	GLI1..3.p2	AF004428|Tpd52l1|21987|tumor protein D52-like 1	NM_009413|Tpd52l1|21987|tumor protein D52-like 1
mm9_v1_chr19_+_47314809_47314814	1.88312	GLI1..3.p2	AK078529|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr10_+_85763287_85763288	1.87534	GLI1..3.p2	L27424|Timp3|21859|tissue inhibitor of metalloproteinase 3
mm9_v1_chr6_-_60778740_60778989	1.87266	GLI1..3.p2	BC046764|Snca|20617|synuclein, alpha	AK156316|Snca|20617|synuclein, alpha	AK014472|Snca|20617|synuclein, alpha	AF033261|Snca|20617|synuclein, alpha	NM_001042451|Snca|20617|synuclein, alpha
mm9_v1_chrX_+_8469478_8469488	1.87258	GLI1..3.p2	NM_175327|B630019K06Rik|102941|RIKEN cDNA B630019K06 gene
mm9_v1_chr11_+_92959670_92959804	1.87139	GLI1..3.p2	AK012302|Car10|72605|carbonic anhydrase 10	AB080741|Car10|72605|carbonic anhydrase 10	BC066111|Car10|72605|carbonic anhydrase 10	AK038695|Car10|72605|carbonic anhydrase 10
mm9_v1_chr7_+_17460662_17460665	1.86902	GLI1..3.p2	DQ832319|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)	NM_001081655|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm9_v1_chr18_+_37157533_37157533	1.86824	GLI1..3.p2	AY013767|Pcdha9|192161|protocadherin alpha 9	NM_138661|Pcdha9|192161|protocadherin alpha 9
mm9_v1_chr1_+_168184269_168184413	1.86422	GLI1..3.p2	NM_001164528|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024494|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024495|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024496|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024497|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024498|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024499|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024500|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024501|Ildr2|100039795|immunoglobulin-like domain containing receptor 2
mm9_v1_chr3_-_84283349_84283412	1.86371	GLI1..3.p2	BC137632|Fhdc1|229474|FH2 domain containing 1	AK173244|Fhdc1|229474|FH2 domain containing 1
mm9_v1_chr4_+_149022266_149022381	1.86173	GLI1..3.p2	
mm9_v1_chr5_-_92471976_92472071	1.86069	GLI1..3.p2	BC117894|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	BC117895|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AB029066|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	NM_177270|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AB029065|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	NM_016912|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AK144574|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)
mm9_v1_chr17_+_24054421_24054424	1.85615	GLI1..3.p2	NM_001077633|Dcpp3|620253|demilune cell and parotid protein 3
mm9_v1_chr16_-_87432721_87432850	1.85533	GLI1..3.p2	AK173009|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	AK165062|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	AK036725|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	AK019706|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	BC116272|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	BC116273|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	NM_001081068|Ltn1|78913|listerin E3 ubiquitin protein ligase 1
mm9_v1_chr13_+_115608425_115608505	1.85195	GLI1..3.p2	NM_001113374|Mocs2|17434|molybdenum cofactor synthesis 2	NM_001113375|Mocs2|17434|molybdenum cofactor synthesis 2	NM_013826|Mocs2|17434|molybdenum cofactor synthesis 2	AK010112|Mocs2|17434|molybdenum cofactor synthesis 2	AK002719|Mocs2|17434|molybdenum cofactor synthesis 2	AK078782|Mocs2|17434|molybdenum cofactor synthesis 2	BC004631|Mocs2|17434|molybdenum cofactor synthesis 2	BC024371|Mocs2|17434|molybdenum cofactor synthesis 2	AF091872|Mocs2|17434|molybdenum cofactor synthesis 2
mm9_v1_chr16_-_44332950_44332950	1.85041	GLI1..3.p2	BC079584|Sidt1|320007|SID1 transmembrane family, member 1	NM_001159419|Sidt1|320007|SID1 transmembrane family, member 1	NM_198034|Sidt1|320007|SID1 transmembrane family, member 1
mm9_v1_chr7_+_107376116_107376219	1.84456	GLI1..3.p2	NM_027629|Pgm2l1|70974|phosphoglucomutase 2-like 1	AK039189|Pgm2l1|70974|phosphoglucomutase 2-like 1	AK040513|Pgm2l1|70974|phosphoglucomutase 2-like 1	BC076571|Pgm2l1|70974|phosphoglucomutase 2-like 1
mm9_v1_chr12_+_10397864_10397904	1.84123	GLI1..3.p2	AK142290|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)
mm9_v1_chr11_+_104189978_104190032	1.84035	GLI1..3.p2	AK135147|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr8_+_11443165_11443220	1.83845	GLI1..3.p2	BC013560|Col4a2|12827|collagen, type IV, alpha 2
mm9_v1_chr2_+_181255209_181255262	1.83507	GLI1..3.p2	NM_016775|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK083584|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK007879|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK029006|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK032373|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	BC018231|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5
mm9_v1_chr11_+_94812919_94812953	1.82692	GLI1..3.p2	AK159300|Col1a1|12842|collagen, type I, alpha 1
mm9_v1_chr14_-_55531726_55531986	1.82602	GLI1..3.p2	BC062878|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AB012808|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AK007059|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	BC005727|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AK163116|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	NM_021551|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17
mm9_v1_chr3_-_107820766_107820890	1.82433	GLI1..3.p2	J04632|Gstm1|14862|glutathione S-transferase, mu 1	NM_010358|Gstm1|14862|glutathione S-transferase, mu 1
mm9_v1_chrX_-_69901382_69901584	1.82132	GLI1..3.p2	BC119317|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	BC120686|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	M86568|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	AK134760|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	AK039144|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	NM_008067|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3
mm9_v1_chr14_-_73762840_73762848	1.81996	GLI1..3.p2	AK205546|Itm2b|16432|integral membrane protein 2B	AK205709|Itm2b|16432|integral membrane protein 2B	AK209176|Itm2b|16432|integral membrane protein 2B	AK215843|Itm2b|16432|integral membrane protein 2B	AK217202|Itm2b|16432|integral membrane protein 2B	AK218926|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr8_-_48374755_48374779	1.81332	GLI1..3.p2	AK053894|Stox2|71069|storkhead box 2	NM_001114311|Stox2|71069|storkhead box 2
mm9_v1_chr8_+_125935441_125935463	1.81233	GLI1..3.p2	AK012528|Tubb3|22152|tubulin, beta 3	AK051298|Tubb3|22152|tubulin, beta 3	AK082942|Tubb3|22152|tubulin, beta 3	AK149014|Tubb3|22152|tubulin, beta 3	BC088749|Tubb3|22152|tubulin, beta 3	BC031357|Tubb3|22152|tubulin, beta 3	NM_023279|Tubb3|22152|tubulin, beta 3
mm9_v1_chr14_-_52533039_52533074	1.81205	GLI1..3.p2	AK158900|Ndrg2|29811|N-myc downstream regulated gene 2
mm9_v1_chr11_+_72812583_72812651	1.81109	GLI1..3.p2	AF310647|P2rx1|18436|purinergic receptor P2X, ligand-gated ion channel, 1	BC015084|P2rx1|18436|purinergic receptor P2X, ligand-gated ion channel, 1	AK035304|P2rx1|18436|purinergic receptor P2X, ligand-gated ion channel, 1	NM_008771|P2rx1|18436|purinergic receptor P2X, ligand-gated ion channel, 1	X84896|P2rx1|18436|purinergic receptor P2X, ligand-gated ion channel, 1
mm9_v1_chr2_-_121180807_121180816	1.80826	GLI1..3.p2	AK078268|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	AK162596|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	AK046696|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1
mm9_v1_chr11_+_72832523_72832554	1.79941	GLI1..3.p2	BC017529|Camkk1|55984|calcium/calmodulin-dependent protein kinase kinase 1, alpha	AF117384|Camkk1|55984|calcium/calmodulin-dependent protein kinase kinase 1, alpha
mm9_v1_chr11_+_59652991_59653017	1.79588	GLI1..3.p2	AK008226|Nt5m|103850|5',3'-nucleotidase, mitochondrial
mm9_v1_chr16_-_85173930_85173941	1.78201	GLI1..3.p2	AK159718|App|11820|amyloid beta (A4) precursor protein	M18373|App|11820|amyloid beta (A4) precursor protein	U84012|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr4_+_42930076_42930171	1.76769	GLI1..3.p2	BC057092|N28178|230085|expressed sequence N28178	NM_172690|N28178|230085|expressed sequence N28178	AK046283|N28178|230085|expressed sequence N28178	AK038528|N28178|230085|expressed sequence N28178
mm9_v1_chr17_-_24781872_24781901	1.76438	GLI1..3.p2	BC065778|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK002557|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	NM_023449|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm9_v1_chr13_+_34967355_34967379	1.76277	GLI1..3.p2	NM_013830|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	AK165391|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm9_v1_chr9_+_103014374_103014418	1.76236	GLI1..3.p2	BC060618|Rab6b|270192|RAB6B, member RAS oncogene family	NM_173781|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr16_+_17276434_17276446	1.76099	GLI1..3.p2	AB041601|Tmem191c|224019|transmembrane protein 191C
mm9_v1_chr12_+_78339071_78339134	1.75875	GLI1..3.p2	BC010666|Fut8|53618|fucosyltransferase 8	AK051811|Fut8|53618|fucosyltransferase 8
mm9_v1_chr15_+_101974978_101975063	1.75616	GLI1..3.p2	CT010184|Igfbp6|16012|insulin-like growth factor binding protein 6
mm9_v1_chr19_-_4906607_4906628	1.7522	GLI1..3.p2	AK037753|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	BC076577|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK161343|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK045850|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK168901|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	NM_001033128|Bbs1|52028|Bardet-Biedl syndrome 1 (human)
mm9_v1_chr6_-_91757386_91757427	1.75072	GLI1..3.p2	NM_001159507|Grip2|243547|glutamate receptor interacting protein 2
mm9_v1_chr7_+_133415982_133416132	1.7504	GLI1..3.p2	BC031759|Sbk1|104175|SH3-binding kinase 1	NM_145587|Sbk1|104175|SH3-binding kinase 1
mm9_v1_chr8_+_112603609_112603709	1.74961	GLI1..3.p2	NM_175480|Zfp612|234725|zinc finger protein 612	BC048413|Zfp612|234725|zinc finger protein 612	AK133449|Zfp612|234725|zinc finger protein 612	AK046220|Zfp612|234725|zinc finger protein 612
mm9_v1_chr9_+_121275947_121276133	1.7464	GLI1..3.p2	NM_175114|Trak1|67095|trafficking protein, kinesin binding 1	BC046285|Trak1|67095|trafficking protein, kinesin binding 1	BC058971|Trak1|67095|trafficking protein, kinesin binding 1
mm9_v1_chr11_+_102964362_102964424	1.74256	GLI1..3.p2	AK199070|Acbd4|67131|acyl-Coenzyme A binding domain containing 4	AK008170|Acbd4|67131|acyl-Coenzyme A binding domain containing 4
mm9_v1_chr10_+_81038028_81038276	1.74249	GLI1..3.p2	AK144581|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)	BC071219|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)	BC051955|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)	BC062961|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)	AF145958|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)	NM_019725|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)
mm9_v1_chr2_-_121282428_121282516	1.73477	GLI1..3.p2	BC026459|Serinc4|574418|serine incorporator 4	BC083132|Serinc4|574418|serine incorporator 4	NM_001025371|Serinc4|574418|serine incorporator 4	AK044479|Serinc4|574418|serine incorporator 4
mm9_v1_chr5_-_3803095_3803144	1.73331	GLI1..3.p2	NM_001003909|Ankib1|70797|ankyrin repeat and IBR domain containing 1	AK014523|Ankib1|70797|ankyrin repeat and IBR domain containing 1
mm9_v1_chr13_-_25029458_25029547	1.732	GLI1..3.p2	AK051603|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	BC138703|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK159485|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK166313|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK144030|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK052703|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	NM_172532|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1
mm9_v1_chr10_-_105011439_105011534	1.72957	GLI1..3.p2	BC092226|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	AK052344|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	AK135552|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	NM_177368|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2
mm9_v1_chr1_-_75260687_75260787	1.72763	GLI1..3.p2	U11812|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	BC068165|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	AK220467|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	AK163141|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	DQ832283|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	AK076223|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	AK139398|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	NM_008985|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	AK041296|Ptprn|19275|protein tyrosine phosphatase, receptor type, N
mm9_v1_chr17_+_23810844_23810967	1.72668	GLI1..3.p2	AK003865|Hcfc1r1|353502|host cell factor C1 regulator 1 (XPO1-dependent)	BC079865|Hcfc1r1|353502|host cell factor C1 regulator 1 (XPO1-dependent)
mm9_v1_chr19_-_58529766_58529841	1.72439	GLI1..3.p2	BC044783|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	AK076171|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1
mm9_v1_chr11_+_97702093_97702093	1.71325	GLI1..3.p2	NM_001080935|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene
mm9_v1_chr6_-_4697009_4697210	1.71315	GLI1..3.p2	AF103877|Sgce|20392|sarcoglycan, epsilon	AB200281|Sgce|20392|sarcoglycan, epsilon	AB200282|Sgce|20392|sarcoglycan, epsilon	AK076102|Sgce|20392|sarcoglycan, epsilon	AB117975|Sgce|20392|sarcoglycan, epsilon	AF031919|Sgce|20392|sarcoglycan, epsilon	AK132210|Sgce|20392|sarcoglycan, epsilon	BC012665|Sgce|20392|sarcoglycan, epsilon	NM_001130188|Sgce|20392|sarcoglycan, epsilon	NM_001130189|Sgce|20392|sarcoglycan, epsilon	NM_001130190|Sgce|20392|sarcoglycan, epsilon	NM_001130191|Sgce|20392|sarcoglycan, epsilon	NM_011360|Sgce|20392|sarcoglycan, epsilon
mm9_v1_chr7_+_107855164_107855207	1.70775	GLI1..3.p2	AK122235|Fam168a|319604|family with sequence similarity 168, member A	AK162512|Fam168a|319604|family with sequence similarity 168, member A	AK046944|Fam168a|319604|family with sequence similarity 168, member A	AK043083|Fam168a|319604|family with sequence similarity 168, member A	BC076580|Fam168a|319604|family with sequence similarity 168, member A
mm9_v1_chr10_+_89336253_89336253	1.7061	GLI1..3.p2	NM_001128086|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr11_-_115281223_115281228	1.70566	GLI1..3.p2	AF354051|Atp5h|71679|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d	AK088617|Atp5h|71679|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d
mm9_v1_chr1_+_75518349_75518365	1.70453	GLI1..3.p2	AK171989|Stk11ip|71728|serine/threonine kinase 11 interacting protein	BC042403|Stk11ip|71728|serine/threonine kinase 11 interacting protein
mm9_v1_chr3_+_96050607_96050778	1.70236	GLI1..3.p2	BC094041|Hist2h3c1|15077|histone cluster 2, H3c1	NM_178216|Hist2h3c1|15077|histone cluster 2, H3c1	BC132488|Hist2h3c2-ps|97114|histone cluster 2, H3c2, pseudogene	BC132490|Hist2h3c2-ps|97114|histone cluster 2, H3c2, pseudogene
mm9_v1_chr14_+_105658063_105658107	1.69863	GLI1..3.p2	AK031073|Ndfip2|76273|Nedd4 family interacting protein 2	AK150832|Ndfip2|76273|Nedd4 family interacting protein 2
mm9_v1_chr11_-_68666619_68666656	1.69641	GLI1..3.p2	AF323918|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)	NM_023668|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)
mm9_v1_chr9_+_108686107_108686181	1.69592	GLI1..3.p2	AK005166|Ip6k2|76500|inositol hexaphosphate kinase 2	AK050593|Ip6k2|76500|inositol hexaphosphate kinase 2	AK057615|Ip6k2|76500|inositol hexaphosphate kinase 2
mm9_v1_chr6_+_110595586_110595619	1.69368	GLI1..3.p2	BC080315|Grm7|108073|glutamate receptor, metabotropic 7	NM_177328|Grm7|108073|glutamate receptor, metabotropic 7
mm9_v1_chr7_+_5008311_5008341	1.68432	GLI1..3.p2	NM_146178|Ccdc106|232821|coiled-coil domain containing 106	AB041804|Ccdc106|232821|coiled-coil domain containing 106
mm9_v1_chr8_-_42219037_42219129	1.6818	GLI1..3.p2	AK040710|Mtus1|102103|mitochondrial tumor suppressor 1	AK143781|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005863|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr18_+_24867945_24868023	1.6772	GLI1..3.p2	AB078608|Fhod3|225288|formin homology 2 domain containing 3	AB078609|Fhod3|225288|formin homology 2 domain containing 3	AB100088|Fhod3|225288|formin homology 2 domain containing 3	NM_175276|Fhod3|225288|formin homology 2 domain containing 3	AK148245|Fhod3|225288|formin homology 2 domain containing 3	BC138046|Fhod3|225288|formin homology 2 domain containing 3
mm9_v1_chr9_-_21052886_21052890	1.6752	GLI1..3.p2	NM_053190|S1pr5|94226|sphingosine-1-phosphate receptor 5
mm9_v1_chr12_+_81619976_81620155	1.67412	GLI1..3.p2	NM_001081421|Galntl1|108760|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1	AB045325|Galntl1|108760|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1	AK138883|Galntl1|108760|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1	AB175683|Galntl1|108760|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1
mm9_v1_chr1_+_9591550_9591585	1.67097	GLI1..3.p2	BC066997|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene
mm9_v1_chr1_+_51346108_51346149	1.67077	GLI1..3.p2	S67386|Sdpr|20324|serum deprivation response	BC020008|Sdpr|20324|serum deprivation response
mm9_v1_chr11_-_108205240_108205247	1.66996	GLI1..3.p2	M25811|Prkca|18750|protein kinase C, alpha
mm9_v1_chr14_-_73762933_73762949	1.66689	GLI1..3.p2	AK002796|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr10_+_81037993_81038004	1.66471	GLI1..3.p2	AK160999|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)
mm9_v1_chr7_-_118923483_118923501	1.66422	GLI1..3.p2	BC024988|Galntl4|233733|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4	NM_173739|Galntl4|233733|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4	AK084671|Galntl4|233733|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4
mm9_v1_chr19_+_4100621_4100621	1.66026	GLI1..3.p2	NM_008851|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	Y08922|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1
mm9_v1_chr11_+_3883638_3883715	1.66005	GLI1..3.p2	AK007645|Gal3st1|53897|galactose-3-O-sulfotransferase 1	NM_001177703|Gal3st1|53897|galactose-3-O-sulfotransferase 1	NM_016922|Gal3st1|53897|galactose-3-O-sulfotransferase 1	BC026806|Gal3st1|53897|galactose-3-O-sulfotransferase 1
mm9_v1_chr11_+_68902025_68902081	1.65669	GLI1..3.p2	BC055105|Vamp2|22318|vesicle-associated membrane protein 2	NM_009497|Vamp2|22318|vesicle-associated membrane protein 2	BC039745|Vamp2|22318|vesicle-associated membrane protein 2	U60150|Vamp2|22318|vesicle-associated membrane protein 2
mm9_v1_chr15_-_98781060_98781163	1.65153	GLI1..3.p2	M28729|Tuba1a|22142|tubulin, alpha 1A	AK201449|Tuba1a|22142|tubulin, alpha 1A
mm9_v1_chr16_-_85173918_85173926	1.6514	GLI1..3.p2	AK161976|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr2_-_104250490_104250490	1.64656	GLI1..3.p2	NM_001033347|D430041D05Rik|241589|RIKEN cDNA D430041D05 gene
mm9_v1_chr8_+_72853663_72853663	1.64479	GLI1..3.p2	M57639|Gdf1|14559|growth differentiation factor 1	NM_008107|Gdf1|14559|growth differentiation factor 1
mm9_v1_chr8_-_73292296_73292389	1.6445	GLI1..3.p2	
mm9_v1_chr4_+_73897782_73897907	1.63663	GLI1..3.p2	AK173023|Kdm4c|76804|lysine (K)-specific demethylase 4C	NM_144787|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK144890|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK144103|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK081769|Kdm4c|76804|lysine (K)-specific demethylase 4C	BC020180|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK048092|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK042792|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK053104|Kdm4c|76804|lysine (K)-specific demethylase 4C
mm9_v1_chr17_+_70318707_70318748	1.63592	GLI1..3.p2	AK031404|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK043418|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK043683|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK031410|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK035763|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr10_-_78560301_78560348	1.63236	GLI1..3.p2	BC082302|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene	AK148309|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene	NM_001004362|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene
mm9_v1_chr3_-_104315778_104315782	1.63027	GLI1..3.p2	AK036116|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2	NM_001025067|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chr2_+_25258568_25258631	1.6283	GLI1..3.p2	BC003320|Npdc1|18146|neural proliferation, differentiation and control gene 1	NM_008721|Npdc1|18146|neural proliferation, differentiation and control gene 1
mm9_v1_chr16_-_84835213_84835265	1.6268	GLI1..3.p2	AK078484|Atp5j|11957|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
mm9_v1_chr1_+_155587480_155587527	1.62072	GLI1..3.p2	AK079543|Rgs16|19734|regulator of G-protein signaling 16	NM_011267|Rgs16|19734|regulator of G-protein signaling 16	AK154324|Rgs16|19734|regulator of G-protein signaling 16	U94828|Rgs16|19734|regulator of G-protein signaling 16	U67189|Rgs16|19734|regulator of G-protein signaling 16	BC049968|Rgs16|19734|regulator of G-protein signaling 16	BC010980|Rgs16|19734|regulator of G-protein signaling 16	BC055459|Rgs16|19734|regulator of G-protein signaling 16	U72881|Rgs16|19734|regulator of G-protein signaling 16
mm9_v1_chr4_-_142889312_142889356	1.6207	GLI1..3.p2	M73748|Pdpn|14726|podoplanin	BC026551|Pdpn|14726|podoplanin
mm9_v1_chr13_-_53472732_53472776	1.61538	GLI1..3.p2	AK084391|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	AF003823|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	AK089030|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	AK053207|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	AK028713|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	AK161140|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1
mm9_v1_chr14_-_65671577_65671651	1.61249	GLI1..3.p2	BC038525|Extl3|54616|exostoses (multiple)-like 3
mm9_v1_chr10_+_81106380_81106406	1.61186	GLI1..3.p2	AK017778|Ankrd24|70615|ankyrin repeat domain 24
mm9_v1_chr5_+_17080553_17080681	1.60987	GLI1..3.p2	AK034239|Sema3c|20348|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	AK078589|Sema3c|20348|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	BC066852|Sema3c|20348|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	NM_013657|Sema3c|20348|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	X85994|Sema3c|20348|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
mm9_v1_chr15_-_101966611_101966682	1.60847	GLI1..3.p2	BC048820|Spryd3|223918|SPRY domain containing 3	NM_001033277|Spryd3|223918|SPRY domain containing 3	AK146689|Spryd3|223918|SPRY domain containing 3
mm9_v1_chr16_-_85173851_85173917	1.60846	GLI1..3.p2	X59379|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr4_+_126846429_126846514	1.60376	GLI1..3.p2	BC057615|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3	NM_198618|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3
mm9_v1_chr14_+_105657949_105657967	1.60296	GLI1..3.p2	AK132235|Ndfip2|76273|Nedd4 family interacting protein 2
mm9_v1_chr6_+_147424392_147424487	1.59264	GLI1..3.p2	AK007917|Ccdc91|67015|coiled-coil domain containing 91	NM_025911|Ccdc91|67015|coiled-coil domain containing 91	BC049073|Ccdc91|67015|coiled-coil domain containing 91	BC006734|Ccdc91|67015|coiled-coil domain containing 91
mm9_v1_chr4_+_149656024_149656024	1.59219	GLI1..3.p2	NM_001085492|Rere|68703|arginine glutamic acid dipeptide (RE) repeats
mm9_v1_chr11_+_94871620_94871635	1.59121	GLI1..3.p2	BC049954|Samd14|217125|sterile alpha motif domain containing 14
mm9_v1_chr1_-_54251877_54252011	1.58936	GLI1..3.p2	AK042922|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_001001883|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_172655|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	AK047602|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm9_v1_chr8_-_4259126_4259300	1.58817	GLI1..3.p2	AK158759|Ctxn1|330695|cortexin 1	BC028881|Ctxn1|330695|cortexin 1	AK154120|Ctxn1|330695|cortexin 1	NM_183315|Ctxn1|330695|cortexin 1
mm9_v1_chr6_-_57775039_57775171	1.58435	GLI1..3.p2	BC024884|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK170152|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK170832|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK030975|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	BC024822|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	NM_146168|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK031812|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK158041|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK165256|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1
mm9_v1_chr6_+_72253241_72253241	1.57602	GLI1..3.p2	NM_147779|Sftpb|20388|surfactant associated protein B
mm9_v1_chr2_-_44965866_44965983	1.57371	GLI1..3.p2	AK122312|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535781|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535783|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr2_+_25258653_25258768	1.57174	GLI1..3.p2	AK146466|Npdc1|18146|neural proliferation, differentiation and control gene 1	L03814|Npdc1|18146|neural proliferation, differentiation and control gene 1	X67209|Npdc1|18146|neural proliferation, differentiation and control gene 1
mm9_v1_chr12_+_85455319_85455327	1.57125	GLI1..3.p2	AK005826|Dnalc1|105000|dynein, axonemal, light chain 1	BC070454|Dnalc1|105000|dynein, axonemal, light chain 1
mm9_v1_chr10_-_79502388_79502430	1.56465	GLI1..3.p2	BC026842|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	AK015823|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	BC045521|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	NM_025554|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	AK010567|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E
mm9_v1_chr19_-_7457315_7457483	1.56424	GLI1..3.p2	AK163590|AI846148|68229|expressed sequence AI846148	BC125249|AI846148|68229|expressed sequence AI846148	AK168010|AI846148|68229|expressed sequence AI846148	AK166227|AI846148|68229|expressed sequence AI846148	AK090385|AI846148|68229|expressed sequence AI846148
mm9_v1_chr2_+_69485227_69485311	1.56248	GLI1..3.p2	AK006743|Bbs5|72569|Bardet-Biedl syndrome 5 (human)	BC061031|Bbs5|72569|Bardet-Biedl syndrome 5 (human)	AK012283|Bbs5|72569|Bardet-Biedl syndrome 5 (human)	NM_028284|Bbs5|72569|Bardet-Biedl syndrome 5 (human)
mm9_v1_chr5_-_29704889_29704943	1.56141	GLI1..3.p2	NM_020295|Lmbr1|56873|limb region 1
mm9_v1_chr13_-_63532777_63533052	1.55923	GLI1..3.p2	AK196042|Fancc|14088|Fanconi anemia, complementation group C	AK035488|Fancc|14088|Fanconi anemia, complementation group C	AK042226|Fancc|14088|Fanconi anemia, complementation group C	AK082717|Fancc|14088|Fanconi anemia, complementation group C	AK080697|Fancc|14088|Fanconi anemia, complementation group C	AK147025|Fancc|14088|Fanconi anemia, complementation group C	L08266|Fancc|14088|Fanconi anemia, complementation group C	AK163161|Fancc|14088|Fanconi anemia, complementation group C	NM_001042673|Fancc|14088|Fanconi anemia, complementation group C	NM_007985|Fancc|14088|Fanconi anemia, complementation group C
mm9_v1_chr11_+_98629709_98629729	1.55481	GLI1..3.p2	
mm9_v1_chr2_+_131317581_131317728	1.5547	GLI1..3.p2	NM_001177833|Smox|228608|spermine oxidase	NM_001177834|Smox|228608|spermine oxidase	NM_001177835|Smox|228608|spermine oxidase	NM_001177836|Smox|228608|spermine oxidase	NM_001177837|Smox|228608|spermine oxidase	NM_001177838|Smox|228608|spermine oxidase	NM_001177839|Smox|228608|spermine oxidase	NM_001177840|Smox|228608|spermine oxidase	NM_145533|Smox|228608|spermine oxidase	AK143129|Smox|228608|spermine oxidase	AK159275|Smox|228608|spermine oxidase	AK159372|Smox|228608|spermine oxidase	AJ567473|Smox|228608|spermine oxidase	AJ567474|Smox|228608|spermine oxidase	AJ567475|Smox|228608|spermine oxidase	AJ567476|Smox|228608|spermine oxidase	AJ567477|Smox|228608|spermine oxidase	AJ567478|Smox|228608|spermine oxidase	AJ567479|Smox|228608|spermine oxidase	AJ567480|Smox|228608|spermine oxidase	BC004831|Smox|228608|spermine oxidase	AK166350|Smox|228608|spermine oxidase	AF495851|Smox|228608|spermine oxidase	AF495852|Smox|228608|spermine oxidase	AF495853|Smox|228608|spermine oxidase
mm9_v1_chr2_-_32237343_32237498	1.54788	GLI1..3.p2	AK079725|1110008P14Rik|73737|RIKEN cDNA 1110008P14 gene	BC049639|1110008P14Rik|73737|RIKEN cDNA 1110008P14 gene	AK081091|1110008P14Rik|73737|RIKEN cDNA 1110008P14 gene	AK003598|1110008P14Rik|73737|RIKEN cDNA 1110008P14 gene	BC024615|1110008P14Rik|73737|RIKEN cDNA 1110008P14 gene	NM_198001|1110008P14Rik|73737|RIKEN cDNA 1110008P14 gene
mm9_v1_chr9_-_79640876_79641130	1.54701	GLI1..3.p2	AK178013|Tmem30a|69981|transmembrane protein 30A	AK192822|Tmem30a|69981|transmembrane protein 30A	AK203327|Tmem30a|69981|transmembrane protein 30A	AK200429|Tmem30a|69981|transmembrane protein 30A	BC018367|Tmem30a|69981|transmembrane protein 30A	AK008408|Tmem30a|69981|transmembrane protein 30A	BC018491|Tmem30a|69981|transmembrane protein 30A	AK161096|Tmem30a|69981|transmembrane protein 30A
mm9_v1_chr6_+_72305440_72305522	1.54492	GLI1..3.p2	NM_144916|Tmem150a|232086|transmembrane protein 150A	BC028825|Tmem150a|232086|transmembrane protein 150A
mm9_v1_chr16_+_23107538_23107551	1.54429	GLI1..3.p2	NM_001123037|Eif4a2|13682|eukaryotic translation initiation factor 4A2	NM_001123038|Eif4a2|13682|eukaryotic translation initiation factor 4A2	NM_013506|Eif4a2|13682|eukaryotic translation initiation factor 4A2
mm9_v1_chr4_+_104829963_104829965	1.54276	GLI1..3.p2	BC005558|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr11_-_109472715_109472760	1.54057	GLI1..3.p2	AK159608|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	AK170563|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	AK034907|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1
mm9_v1_chr19_+_6341137_6341249	1.53764	GLI1..3.p2	AK154164|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2	AK154323|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2	BC116286|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2	BC116287|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2	NM_009006|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2	U50595|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2
mm9_v1_chr9_+_56843159_56843305	1.53703	GLI1..3.p2	AK089069|Ptpn9|56294|protein tyrosine phosphatase, non-receptor type 9	AF013490|Ptpn9|56294|protein tyrosine phosphatase, non-receptor type 9
mm9_v1_chr6_+_72389009_72389080	1.53489	GLI1..3.p2	AK145188|4930414L22Rik|78108|RIKEN cDNA 4930414L22 gene
mm9_v1_chr1_-_136131963_136131973	1.53398	GLI1..3.p2	AK043954|Adora1|11539|adenosine A1 receptor
mm9_v1_chr11_+_32183671_32183700	1.52954	GLI1..3.p2	AK002222|Hba-a2|110257|hemoglobin alpha, adult chain 2	AK010937|Hba-a1|15122|hemoglobin alpha, adult chain 1	AK011025|Hba-a1|15122|hemoglobin alpha, adult chain 1	AK011055|Hba-a1|15122|hemoglobin alpha, adult chain 1	NM_008218|Hba-a1|15122|hemoglobin alpha, adult chain 1	L75940|Hba-a1|15122|hemoglobin alpha, adult chain 1	AK003077|Hba-a1|15122|hemoglobin alpha, adult chain 1	AK005434|Hba-a2|110257|hemoglobin alpha, adult chain 2	AK010422|Hba-a2|110257|hemoglobin alpha, adult chain 2	AK010923|Hba-a1|15122|hemoglobin alpha, adult chain 1	AK010927|Hba-a1|15122|hemoglobin alpha, adult chain 1	AK010933|Hba-a1|15122|hemoglobin alpha, adult chain 1	AK010938|Hba-a2|110257|hemoglobin alpha, adult chain 2	AK010987|Hba-a1|15122|hemoglobin alpha, adult chain 1	AK011018|Hba-a1|15122|hemoglobin alpha, adult chain 1	AK011023|Hba-a1|15122|hemoglobin alpha, adult chain 1	AK011028|Hba-a1|15122|hemoglobin alpha, adult chain 1	AK011030|Hba-a2|110257|hemoglobin alpha, adult chain 2	AK011073|Hba-a2|110257|hemoglobin alpha, adult chain 2	AK011076|Hba-a1|15122|hemoglobin alpha, adult chain 1	AK011121|Hba-a2|110257|hemoglobin alpha, adult chain 2	AK012329|Hba-a1|15122|hemoglobin alpha, adult chain 1	AK012348|Hba-a2|110257|hemoglobin alpha, adult chain 2	AK012755|Hba-a1|15122|hemoglobin alpha, adult chain 1	AK019138|Hba-a2|110257|hemoglobin alpha, adult chain 2	AK028173|Hba-a2|110257|hemoglobin alpha, adult chain 2	AK076068|Hba-a2|110257|hemoglobin alpha, adult chain 2	AK171893|Hba-a1|15122|hemoglobin alpha, adult chain 1	NM_001083955|Hba-a2|110257|hemoglobin alpha, adult chain 2	M10466|Hba-a2|110257|hemoglobin alpha, adult chain 2	BC043020|Hba-a1|15122|hemoglobin alpha, adult chain 1	M26895|Hba-a2|110257|hemoglobin alpha, adult chain 2
mm9_v1_chrX_-_153929935_153930011	1.52844	GLI1..3.p2	AK017775|Sms|20603|spermine synthase	Y09419|Sms|20603|spermine synthase	BC046623|Sms|20603|spermine synthase	AF031486|Sms|20603|spermine synthase	AK049787|Sms|20603|spermine synthase	AK160637|Sms|20603|spermine synthase	AK149929|Sms|20603|spermine synthase	AK002687|Sms|20603|spermine synthase	AK049780|Sms|20603|spermine synthase	AK136798|Sms|20603|spermine synthase	AK011542|Sms|20603|spermine synthase	AK160659|Sms|20603|spermine synthase	NM_009214|Sms|20603|spermine synthase	AK166665|Sms|20603|spermine synthase
mm9_v1_chr4_+_12067460_12067484	1.52811	GLI1..3.p2	BC050844|Rbm12b|72397|RNA binding motif protein 12B
mm9_v1_chr1_+_34636537_34636571	1.5178	GLI1..3.p2	NM_213727|Fam123c|211383|family with sequence similarity 123, member C	BC070435|Fam123c|211383|family with sequence similarity 123, member C
mm9_v1_chr19_+_7495023_7495107	1.51175	GLI1..3.p2	BC096549|2700081O15Rik|108899|RIKEN cDNA 2700081O15 gene	BC096638|2700081O15Rik|108899|RIKEN cDNA 2700081O15 gene
mm9_v1_chr4_+_104829951_104829954	1.50823	GLI1..3.p2	AK011276|Ppap2b|67916|phosphatidic acid phosphatase type 2B	NM_080555|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr5_+_30607907_30607949	1.5048	GLI1..3.p2	AK140154|Gm1060|381738|predicted gene 1060	NM_001033460|Gm1060|381738|predicted gene 1060	BC150863|Gm1060|381738|predicted gene 1060
mm9_v1_chr17_-_23701088_23701089	1.50457	GLI1..3.p2	AK133902|Zfp213|449521|zinc finger protein 213
mm9_v1_chr15_+_88890519_88890533	1.50339	GLI1..3.p2	DQ093579|Panx2|406218|pannexin 2
mm9_v1_chr16_+_20589654_20589675	1.4949	GLI1..3.p2	AK141799|Vwa5b2|328643|von Willebrand factor A domain containing 5B2	NM_001144953|Vwa5b2|328643|von Willebrand factor A domain containing 5B2	NM_182636|Vwa5b2|328643|von Willebrand factor A domain containing 5B2
mm9_v1_chr16_+_72663393_72663448	1.49144	GLI1..3.p2	AK138485|Robo1|19876|roundabout homolog 1 (Drosophila)	AK143001|Robo1|19876|roundabout homolog 1 (Drosophila)	NM_019413|Robo1|19876|roundabout homolog 1 (Drosophila)	AK032752|Robo1|19876|roundabout homolog 1 (Drosophila)	AK142047|Robo1|19876|roundabout homolog 1 (Drosophila)
mm9_v1_chr2_+_32391249_32391261	1.4912	GLI1..3.p2	AK157331|Fam102a|98952|family with sequence similarity 102, member A	AK157490|Fam102a|98952|family with sequence similarity 102, member A	AK158435|Fam102a|98952|family with sequence similarity 102, member A	AK165751|Fam102a|98952|family with sequence similarity 102, member A	AK170951|Fam102a|98952|family with sequence similarity 102, member A	AK172536|Fam102a|98952|family with sequence similarity 102, member A	AK170847|Fam102a|98952|family with sequence similarity 102, member A
mm9_v1_chr10_-_127846807_127846878	1.49036	GLI1..3.p2	BC026942|Obfc2b|69917|oligonucleotide/oligosaccharide-binding fold containing 2B	DQ158906|Obfc2b|69917|oligonucleotide/oligosaccharide-binding fold containing 2B	NM_027257|Obfc2b|69917|oligonucleotide/oligosaccharide-binding fold containing 2B
mm9_v1_chr12_+_89961317_89961336	1.48636	GLI1..3.p2	AK078216|Nrxn3|18191|neurexin III	AK082055|Nrxn3|18191|neurexin III	NM_001198587|Nrxn3|18191|neurexin III	AK149250|Nrxn3|18191|neurexin III
mm9_v1_chr13_+_42775991_42775991	1.4818	GLI1..3.p2	NM_198419|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr18_-_43552694_43552984	1.48039	GLI1..3.p2	BC023003|Dpysl3|22240|dihydropyrimidinase-like 3	NM_009468|Dpysl3|22240|dihydropyrimidinase-like 3	X87817|Dpysl3|22240|dihydropyrimidinase-like 3
mm9_v1_chr8_+_125935470_125935482	1.47047	GLI1..3.p2	AF312873|Tubb3|22152|tubulin, beta 3
mm9_v1_chr3_+_95428905_95429041	1.46992	GLI1..3.p2	AK006149|Ensa|56205|endosulfine alpha	AK149726|Ensa|56205|endosulfine alpha	AK161290|Ensa|56205|endosulfine alpha	BC059724|Ensa|56205|endosulfine alpha	BC020533|Ensa|56205|endosulfine alpha	BC058802|Ensa|56205|endosulfine alpha	AJ005985|Ensa|56205|endosulfine alpha
mm9_v1_chr3_+_90345082_90345194	1.46837	GLI1..3.p2	BC020031|S100a16|67860|S100 calcium binding protein A16	NM_026416|S100a16|67860|S100 calcium binding protein A16
mm9_v1_chr14_+_56179739_56179780	1.46821	GLI1..3.p2	NM_001199009|Dcaf11|28199|DDB1 and CUL4 associated factor 11	AK150183|Dcaf11|28199|DDB1 and CUL4 associated factor 11
mm9_v1_chr19_+_42245036_42245077	1.46474	GLI1..3.p2	NM_001164531|Zfyve27|319740|zinc finger, FYVE domain containing 27	NM_177319|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr16_+_18877129_18877328	1.46383	GLI1..3.p2	BC052856|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	BC060181|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm9_v1_chr11_-_109472694_109472694	1.4624	GLI1..3.p2	BC025560|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1
mm9_v1_chr15_+_5135711_5135737	1.46232	GLI1..3.p2	AK013464|Ttc33|67515|tetratricopeptide repeat domain 33	BC017533|Ttc33|67515|tetratricopeptide repeat domain 33	AK075643|Ttc33|67515|tetratricopeptide repeat domain 33
mm9_v1_chr9_-_44543245_44543320	1.45678	GLI1..3.p2	BC058712|Phldb1|102693|pleckstrin homology-like domain, family B, member 1	NM_153537|Phldb1|102693|pleckstrin homology-like domain, family B, member 1
mm9_v1_chr1_+_72871060_72871146	1.45577	GLI1..3.p2	AK012703|Igfbp2|16008|insulin-like growth factor binding protein 2	BC012724|Igfbp2|16008|insulin-like growth factor binding protein 2	NM_008342|Igfbp2|16008|insulin-like growth factor binding protein 2	BC054473|Igfbp2|16008|insulin-like growth factor binding protein 2	X81580|Igfbp2|16008|insulin-like growth factor binding protein 2	AK011784|Igfbp2|16008|insulin-like growth factor binding protein 2	AK011790|Igfbp2|16008|insulin-like growth factor binding protein 2
mm9_v1_chr7_+_52105323_52105411	1.45228	GLI1..3.p2	BC002180|Akt1s1|67605|AKT1 substrate 1 (proline-rich)
mm9_v1_chr4_-_147278927_147279021	1.45048	GLI1..3.p2	NM_133201|Mfn2|170731|mitofusin 2
mm9_v1_chr17_+_56749361_56749367	1.44722	GLI1..3.p2	
mm9_v1_chr19_-_46387052_46387173	1.43457	GLI1..3.p2	BC069847|Psd|73728|pleckstrin and Sec7 domain containing
mm9_v1_chr11_-_120645428_120645541	1.43169	GLI1..3.p2	AF015770|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	AK004573|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	U94350|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	BC066023|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	NM_009053|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm9_v1_chr15_-_84388113_84388233	1.42827	GLI1..3.p2	AK083881|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like
mm9_v1_chr3_-_107499129_107499327	1.42772	GLI1..3.p2	AB092504|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1	BC018218|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1
mm9_v1_chr8_-_127187033_127187121	1.42367	GLI1..3.p2	AK084773|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	AK009458|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	AK154813|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	AK170562|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	AK155222|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene
mm9_v1_chr11_+_78002569_78002838	1.42068	GLI1..3.p2	BC038638|Rab34|19376|RAB34, member of RAS oncogene family	AB232630|Rab34|19376|RAB34, member of RAS oncogene family	AF322068|Rab34|19376|RAB34, member of RAS oncogene family
mm9_v1_chr12_+_21117670_21117690	1.41317	GLI1..3.p2	AK147656|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm9_v1_chr2_-_164605216_164605262	1.40887	GLI1..3.p2	BC024390|Tnnc2|21925|troponin C2, fast	AK133548|Tnnc2|21925|troponin C2, fast	NM_009394|Tnnc2|21925|troponin C2, fast
mm9_v1_chr5_-_65844386_65844460	1.40218	GLI1..3.p2	BC029314|1110003E01Rik|68552|RIKEN cDNA 1110003E01 gene
mm9_v1_chr17_+_24551509_24551671	1.40194	GLI1..3.p2	AK143213|Rnps1|19826|ribonucleic acid binding protein S1	AK011475|Rnps1|19826|ribonucleic acid binding protein S1	NM_001080127|Rnps1|19826|ribonucleic acid binding protein S1	NM_001080128|Rnps1|19826|ribonucleic acid binding protein S1	NM_009070|Rnps1|19826|ribonucleic acid binding protein S1	AK146443|Rnps1|19826|ribonucleic acid binding protein S1	AK151150|Rnps1|19826|ribonucleic acid binding protein S1	BC002061|Rnps1|19826|ribonucleic acid binding protein S1	AK165905|Rnps1|19826|ribonucleic acid binding protein S1	AK164151|Rnps1|19826|ribonucleic acid binding protein S1
mm9_v1_chr11_-_120012520_120012596	1.40013	GLI1..3.p2	AK007977|Slc38a10|72055|solute carrier family 38, member 10	AK084120|Slc38a10|72055|solute carrier family 38, member 10	AK032245|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr11_+_100181296_100181331	1.39738	GLI1..3.p2	AK150813|Eif1|20918|eukaryotic translation initiation factor 1	AK151575|Eif1|20918|eukaryotic translation initiation factor 1	AK152194|Eif1|20918|eukaryotic translation initiation factor 1	AK169763|Eif1|20918|eukaryotic translation initiation factor 1	AK148032|Eif1|20918|eukaryotic translation initiation factor 1	AK151070|Eif1|20918|eukaryotic translation initiation factor 1	BC003463|Eif1|20918|eukaryotic translation initiation factor 1	NM_011508|Eif1|20918|eukaryotic translation initiation factor 1	BC081429|Eif1|20918|eukaryotic translation initiation factor 1	AF129888|Eif1|20918|eukaryotic translation initiation factor 1	BC010791|Eif1|20918|eukaryotic translation initiation factor 1	BC096691|Eif1|20918|eukaryotic translation initiation factor 1	BC096656|Eif1|20918|eukaryotic translation initiation factor 1
mm9_v1_chr11_+_109511803_109511871	1.39219	GLI1..3.p2	AK049832|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	AK150427|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	AK146380|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	AK151124|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	AK153227|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	BC005697|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha
mm9_v1_chr4_-_86876311_86876327	1.39141	GLI1..3.p2	AK038634|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK034424|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK083127|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr7_+_50834955_50835126	1.38486	GLI1..3.p2	NM_172482|Zfp719|210105|zinc finger protein 719	AK044684|Zfp719|210105|zinc finger protein 719	BC081548|Zfp719|210105|zinc finger protein 719	AK083143|Zfp719|210105|zinc finger protein 719	AK020523|Zfp719|210105|zinc finger protein 719
mm9_v1_chr11_-_3997116_3997172	1.383	GLI1..3.p2	AK008068|Sec14l2|67815|SEC14-like 2 (S. cerevisiae)
mm9_v1_chr2_+_32143820_32143845	1.38239	GLI1..3.p2	AK220509|Golga2|99412|golgi autoantigen, golgin subfamily a, 2
mm9_v1_chr15_-_78994753_78994921	1.37944	GLI1..3.p2	BC023356|Sox10|20665|SRY-box containing gene 10	BC051058|Sox10|20665|SRY-box containing gene 10	AK185165|Sox10|20665|SRY-box containing gene 10	AK193670|Sox10|20665|SRY-box containing gene 10	AK185297|Sox10|20665|SRY-box containing gene 10	BC025171|Sox10|20665|SRY-box containing gene 10	AK043220|Sox10|20665|SRY-box containing gene 10	U66141|Sox10|20665|SRY-box containing gene 10	AK042542|Sox10|20665|SRY-box containing gene 10	NM_011437|Sox10|20665|SRY-box containing gene 10
mm9_v1_chr6_-_113481340_113481484	1.37738	GLI1..3.p2	AK206599|Tmem111|66087|transmembrane protein 111	AK213319|Tmem111|66087|transmembrane protein 111	AK218418|Tmem111|66087|transmembrane protein 111	AK167819|Tmem111|66087|transmembrane protein 111
mm9_v1_chr2_-_64860728_64860875	1.37366	GLI1..3.p2	BC138581|Grb14|50915|growth factor receptor bound protein 14	BC145913|Grb14|50915|growth factor receptor bound protein 14	AF155647|Grb14|50915|growth factor receptor bound protein 14	NM_016719|Grb14|50915|growth factor receptor bound protein 14	AK147041|Grb14|50915|growth factor receptor bound protein 14	AK010849|Grb14|50915|growth factor receptor bound protein 14	AK010903|Grb14|50915|growth factor receptor bound protein 14
mm9_v1_chr5_-_23953594_23953663	1.37248	GLI1..3.p2	AY603379|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1	AK008109|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1	BC019547|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1	AB030183|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1	NM_022418|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1
mm9_v1_chr15_+_12754582_12754660	1.37215	GLI1..3.p2	AK144147|Drosha|14000|drosha, ribonuclease type III	BC088999|Drosha|14000|drosha, ribonuclease type III	AK148640|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr13_-_74487687_74487687	1.37162	GLI1..3.p2	AK034928|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	NM_023281|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
mm9_v1_chr2_-_117168409_117168515	1.36917	GLI1..3.p2	AF106070|Rasgrp1|19419|RAS guanyl releasing protein 1
mm9_v1_chr15_+_74346624_74346672	1.36908	GLI1..3.p2	AK147607|Bai1|107831|brain-specific angiogenesis inhibitor 1	NM_174991|Bai1|107831|brain-specific angiogenesis inhibitor 1	AK147456|Bai1|107831|brain-specific angiogenesis inhibitor 1	AK147459|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr17_-_26338254_26338295	1.36845	GLI1..3.p2	BC002032|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	NM_008113|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma
mm9_v1_chr16_-_14291427_14291500	1.36815	GLI1..3.p2	S81516|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	L25860|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	AK137226|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	D85923|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	D85924|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	AK137716|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	AK085742|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	AK173045|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	NM_001161775|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	NM_013607|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle
mm9_v1_chr2_+_174155506_174155512	1.36466	GLI1..3.p2	BC034446|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr18_-_38409826_38409853	1.36044	GLI1..3.p2	AK050707|1700086O06Rik|73516|RIKEN cDNA 1700086O06 gene	AK078369|1700086O06Rik|73516|RIKEN cDNA 1700086O06 gene	AK007023|1700086O06Rik|73516|RIKEN cDNA 1700086O06 gene
mm9_v1_chr10_+_105011586_105011626	1.35935	GLI1..3.p2	AK034146|9330159K06|327812|hypothetical protein 9330159K06
mm9_v1_chr16_-_85173944_85173969	1.35476	GLI1..3.p2	AK159245|App|11820|amyloid beta (A4) precursor protein	BC070409|App|11820|amyloid beta (A4) precursor protein	AK133639|App|11820|amyloid beta (A4) precursor protein	AK159352|App|11820|amyloid beta (A4) precursor protein	AK030583|App|11820|amyloid beta (A4) precursor protein	AK128971|App|11820|amyloid beta (A4) precursor protein	NM_001198823|App|11820|amyloid beta (A4) precursor protein	NM_001198824|App|11820|amyloid beta (A4) precursor protein	NM_001198825|App|11820|amyloid beta (A4) precursor protein	NM_001198826|App|11820|amyloid beta (A4) precursor protein	NM_007471|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr18_+_61085303_61085326	1.34981	GLI1..3.p2	BC031745|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr7_+_133991066_133991211	1.34933	GLI1..3.p2	BC055768|Doc2a|13446|double C2, alpha	NM_010069|Doc2a|13446|double C2, alpha
mm9_v1_chr10_+_84565370_84565389	1.34693	GLI1..3.p2	NM_001013028|AI597468|103266|expressed sequence AI597468
mm9_v1_chr8_+_129587894_129588193	1.34619	GLI1..3.p2	BC090616|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_001122850|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_033620|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK052416|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053762|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053563|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK137690|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053576|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AY026057|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	BC141187|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	BC145508|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)
mm9_v1_chr10_+_90545796_90545821	1.34292	GLI1..3.p2	AK006283|Ikbip|67454|IKBKB interacting protein	BC034890|Ikbip|67454|IKBKB interacting protein
mm9_v1_chr11_+_115243203_115243359	1.3418	GLI1..3.p2	NM_001080929|Cdr2l|237988|cerebellar degeneration-related protein 2-like	BC144823|Cdr2l|237988|cerebellar degeneration-related protein 2-like	BC150668|Cdr2l|237988|cerebellar degeneration-related protein 2-like
mm9_v1_chr5_+_34326081_34326346	1.34114	GLI1..3.p2	BC147444|Gm1673|381633|predicted gene 1673	BC147468|Gm1673|381633|predicted gene 1673	BC048625|Gm1673|381633|predicted gene 1673	AK141724|Gm1673|381633|predicted gene 1673	NM_001033458|Gm1673|381633|predicted gene 1673	BC100514|Gm1673|381633|predicted gene 1673	BC055794|Gm1673|381633|predicted gene 1673	AK131594|Gm1673|381633|predicted gene 1673
mm9_v1_chr19_-_59018112_59018143	1.33988	GLI1..3.p2	AK076683|Hspa12a|73442|heat shock protein 12A	AK076668|Hspa12a|73442|heat shock protein 12A	AK087732|Hspa12a|73442|heat shock protein 12A
mm9_v1_chr2_+_38860784_38860790	1.33528	GLI1..3.p2	AK043301|Wdr38|76646|WD repeat domain 38
mm9_v1_chr18_+_37105758_37105860	1.3347	GLI1..3.p2	AK129120|Pcdha3|192163|protocadherin alpha 3	BC141348|Pcdha3|192163|protocadherin alpha 3	AY013761|Pcdha3|192163|protocadherin alpha 3	NM_138662|Pcdha3|192163|protocadherin alpha 3
mm9_v1_chr4_+_43888373_43888471	1.33404	GLI1..3.p2	BC132197|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	BC138065|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	BC145133|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	AK042266|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	NM_016678|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	AK157885|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	AK143657|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	BC053025|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	AB006960|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs
mm9_v1_chr5_-_68238444_68238587	1.33008	GLI1..3.p2	BC129872|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	U75321|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK220560|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr5_-_135554038_135554160	1.31622	GLI1..3.p2	BC044789|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AK158287|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AK090181|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AY081953|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AY352519|Vps37d|194309|vacuolar protein sorting 37D (yeast)	NM_177574|Vps37d|194309|vacuolar protein sorting 37D (yeast)
mm9_v1_chr17_-_56279684_56279770	1.31549	GLI1..3.p2	AK139358|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	AK143229|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	NM_001130456|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
mm9_v1_chr11_-_120645076_120645236	1.31538	GLI1..3.p2	AK218494|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	AK207192|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm9_v1_chr2_+_32143868_32143875	1.315	GLI1..3.p2	BC011407|Golga2|99412|golgi autoantigen, golgin subfamily a, 2
mm9_v1_chr1_-_136131399_136131572	1.30886	GLI1..3.p2	AK134709|Adora1|11539|adenosine A1 receptor	AK134553|Adora1|11539|adenosine A1 receptor	AK045729|Adora1|11539|adenosine A1 receptor
mm9_v1_chr13_-_95992547_95992641	1.30099	GLI1..3.p2	AK083166|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr9_+_54612599_54612628	1.30043	GLI1..3.p2	AK144397|Crabp1|12903|cellular retinoic acid binding protein I	X15789|Crabp1|12903|cellular retinoic acid binding protein I	AK045283|Crabp1|12903|cellular retinoic acid binding protein I	NM_013496|Crabp1|12903|cellular retinoic acid binding protein I	BC065787|Crabp1|12903|cellular retinoic acid binding protein I	X15481|Crabp1|12903|cellular retinoic acid binding protein I
mm9_v1_chr9_-_44688946_44689136	1.2896	GLI1..3.p2	AK145484|Mll1|214162|myeloid/lymphoid or mixed-lineage leukemia 1	L17069|Mll1|214162|myeloid/lymphoid or mixed-lineage leukemia 1
mm9_v1_chr16_+_32644728_32644728	1.28941	GLI1..3.p2	BC052421|Tnk2|51789|tyrosine kinase, non-receptor, 2	NM_001110147|Tnk2|51789|tyrosine kinase, non-receptor, 2	NM_016788|Tnk2|51789|tyrosine kinase, non-receptor, 2
mm9_v1_chr17_+_21082425_21082439	1.2868	GLI1..3.p2	BC052678|Ppp2r1a|51792|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform
mm9_v1_chr13_-_92901606_92901650	1.28404	GLI1..3.p2	AK158472|Rasgrf2|19418|RAS protein-specific guanine nucleotide-releasing factor 2
mm9_v1_chr11_+_78640103_78640114	1.28362	GLI1..3.p2	BC130224|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	AK009070|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene
mm9_v1_chr4_-_147278740_147278749	1.27998	GLI1..3.p2	AY123975|Mfn2|170731|mitofusin 2
mm9_v1_chr15_+_101042440_101042460	1.27867	GLI1..3.p2	AK078525|Acvr1b|11479|activin A receptor, type 1B
mm9_v1_chr2_+_156588506_156588592	1.27775	GLI1..3.p2	AK179758|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK186004|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr5_-_144031617_144031663	1.27632	GLI1..3.p2	BC057078|Zfp316|54201|zinc finger protein 316
mm9_v1_chrX_-_98615096_98615252	1.27592	GLI1..3.p2	BC042699|Zmym3|56364|zinc finger, MYM-type 3	BC050131|Zmym3|56364|zinc finger, MYM-type 3	AK033470|Zmym3|56364|zinc finger, MYM-type 3	BC108366|Zmym3|56364|zinc finger, MYM-type 3	NM_001177985|Zmym3|56364|zinc finger, MYM-type 3	NM_001177986|Zmym3|56364|zinc finger, MYM-type 3
mm9_v1_chr2_+_31101302_31101442	1.27591	GLI1..3.p2	BC059825|Ncs1|14299|neuronal calcium sensor 1	NM_019681|Ncs1|14299|neuronal calcium sensor 1
mm9_v1_chr14_+_34736772_34736788	1.27569	GLI1..3.p2	BC058358|Gdf10|14560|growth differentiation factor 10	NM_145741|Gdf10|14560|growth differentiation factor 10	AK042684|Gdf10|14560|growth differentiation factor 10
mm9_v1_chr4_+_124762378_124762419	1.27393	GLI1..3.p2	NM_027310|Meaf6|70088|MYST/Esa1-associated factor 6	AK009177|Meaf6|70088|MYST/Esa1-associated factor 6	AK012867|Meaf6|70088|MYST/Esa1-associated factor 6	BC108404|Meaf6|70088|MYST/Esa1-associated factor 6	BC061024|Meaf6|70088|MYST/Esa1-associated factor 6
mm9_v1_chr13_+_27149438_27149473	1.27043	GLI1..3.p2	NM_001163530|Prl|19109|prolactin	NM_011164|Prl|19109|prolactin	AK017547|Prl|19109|prolactin	AK161619|Prl|19109|prolactin	AK077493|Prl|19109|prolactin	AK017520|Prl|19109|prolactin	X04418|Prl|19109|prolactin	AK017521|Prl|19109|prolactin	AK017579|Prl|19109|prolactin	AK017584|Prl|19109|prolactin	AK133645|Prl|19109|prolactin	AK133736|Prl|19109|prolactin	AK133752|Prl|19109|prolactin	AK161553|Prl|19109|prolactin	AK161557|Prl|19109|prolactin	AK161565|Prl|19109|prolactin	AK161594|Prl|19109|prolactin	BC061141|Prl|19109|prolactin	X02892|Prl|19109|prolactin	AK017562|Prl|19109|prolactin
mm9_v1_chr9_-_113935832_113935880	1.26879	GLI1..3.p2	AK013142|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK089994|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145665|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145998|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK045742|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC096582|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK141177|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK163472|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK044693|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK039010|Fbxl2|72179|F-box and leucine-rich repeat protein 2	NM_178624|Fbxl2|72179|F-box and leucine-rich repeat protein 2
mm9_v1_chr9_+_58100961_58101075	1.26668	GLI1..3.p2	NM_026942|Stoml1|69106|stomatin-like 1	AK045820|Stoml1|69106|stomatin-like 1	BC017536|Stoml1|69106|stomatin-like 1	BC037074|Stoml1|69106|stomatin-like 1	AK148324|Stoml1|69106|stomatin-like 1
mm9_v1_chr10_+_18564932_18564972	1.26666	GLI1..3.p2	AK003734|Perp|64058|PERP, TP53 apoptosis effector	AK009190|Perp|64058|PERP, TP53 apoptosis effector	AK009184|Perp|64058|PERP, TP53 apoptosis effector	BC021772|Perp|64058|PERP, TP53 apoptosis effector
mm9_v1_chr6_+_86145477_86145494	1.264	GLI1..3.p2	AK162680|Tgfa|21802|transforming growth factor alpha	M92420|Tgfa|21802|transforming growth factor alpha
mm9_v1_chr9_-_21095328_21095652	1.26111	GLI1..3.p2	AK140808|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	U20497|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	BC013898|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	U19597|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	AK144737|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	AK132906|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	NM_009878|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
mm9_v1_chr2_-_132211105_132211182	1.26049	GLI1..3.p2	AK041586|Prokr2|246313|prokineticin receptor 2	BC043116|Prokr2|246313|prokineticin receptor 2	BC057557|Prokr2|246313|prokineticin receptor 2	AK030458|Prokr2|246313|prokineticin receptor 2	AK082195|Prokr2|246313|prokineticin receptor 2	NM_144944|Prokr2|246313|prokineticin receptor 2
mm9_v1_chr14_+_105657968_105657981	1.25403	GLI1..3.p2	BC071237|Ndfip2|76273|Nedd4 family interacting protein 2	BC106125|Ndfip2|76273|Nedd4 family interacting protein 2	AK078939|Ndfip2|76273|Nedd4 family interacting protein 2
mm9_v1_chr4_+_119406384_119406407	1.2526	GLI1..3.p2	AK087330|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	AY454346|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	AY454347|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	AK013707|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	AK029093|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3
mm9_v1_chr13_-_59658585_59658681	1.24784	GLI1..3.p2	BC060633|Agtpbp1|67269|ATP/GTP binding protein 1	AK133215|Agtpbp1|67269|ATP/GTP binding protein 1	AF219141|Agtpbp1|67269|ATP/GTP binding protein 1	AK132695|Agtpbp1|67269|ATP/GTP binding protein 1	AK170046|Agtpbp1|67269|ATP/GTP binding protein 1	AK051467|Agtpbp1|67269|ATP/GTP binding protein 1	BC048468|Agtpbp1|67269|ATP/GTP binding protein 1	AK015394|Agtpbp1|67269|ATP/GTP binding protein 1	NM_001048008|Agtpbp1|67269|ATP/GTP binding protein 1	NM_023328|Agtpbp1|67269|ATP/GTP binding protein 1
mm9_v1_chr9_-_66881744_66881755	1.24632	GLI1..3.p2	AK210663|Tpm1|22003|tropomyosin 1, alpha
mm9_v1_chr5_+_121099226_121099366	1.24581	GLI1..3.p2	AK156050|Rasal1|19415|RAS protein activator like 1 (GAP1 like)	AF086714|Rasal1|19415|RAS protein activator like 1 (GAP1 like)
mm9_v1_chr11_-_120012597_120012600	1.2455	GLI1..3.p2	BC088811|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr17_-_80689815_80689815	1.24244	GLI1..3.p2	BC062952|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	NM_001163759|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	NM_198942|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
mm9_v1_chr12_+_89599244_89599334	1.24179	GLI1..3.p2	AK050868|Adck1|72113|aarF domain containing kinase 1	NM_028105|Adck1|72113|aarF domain containing kinase 1	AK044573|Adck1|72113|aarF domain containing kinase 1	BC010539|Adck1|72113|aarF domain containing kinase 1
mm9_v1_chr19_-_24299389_24299452	1.23858	GLI1..3.p2	AK028494|Tjp2|21873|tight junction protein 2
mm9_v1_chr19_-_42276620_42276741	1.23848	GLI1..3.p2	BC032921|Sfrp5|54612|secreted frizzled-related sequence protein 5	AF117759|Sfrp5|54612|secreted frizzled-related sequence protein 5	NM_018780|Sfrp5|54612|secreted frizzled-related sequence protein 5
mm9_v1_chr4_-_123395382_123395431	1.23641	GLI1..3.p2	BC002163|BC002163|170658|NADH dehydrogenase Fe-S protein 5 pseudogene	AK152845|Ndufs5|595136|NADH dehydrogenase (ubiquinone) Fe-S protein 5	AK148505|Ndufs5|595136|NADH dehydrogenase (ubiquinone) Fe-S protein 5	NM_001030274|Ndufs5|595136|NADH dehydrogenase (ubiquinone) Fe-S protein 5
mm9_v1_chr14_+_105658112_105658180	1.23612	GLI1..3.p2	BC117075|Ndfip2|76273|Nedd4 family interacting protein 2	BC119092|Ndfip2|76273|Nedd4 family interacting protein 2	AK013250|Ndfip2|76273|Nedd4 family interacting protein 2	AF411608|Ndfip2|76273|Nedd4 family interacting protein 2
mm9_v1_chr6_+_29346606_29346665	1.23602	GLI1..3.p2	NM_145574|Ccdc136|232664|coiled-coil domain containing 136
mm9_v1_chr14_-_56503083_56503107	1.2326	GLI1..3.p2	BC065108|Cbln3|56410|cerebellin 3 precursor protein	NM_019820|Cbln3|56410|cerebellin 3 precursor protein
mm9_v1_chr17_-_25934035_25934080	1.2308	GLI1..3.p2	BC132177|Metrn|70083|meteorin, glial cell differentiation regulator
mm9_v1_chr3_+_57540000_57540004	1.22562	GLI1..3.p2	AK036591|Rnf13|24017|ring finger protein 13
mm9_v1_chr11_+_94871643_94871672	1.22547	GLI1..3.p2	AK044765|Samd14|217125|sterile alpha motif domain containing 14	BC034054|Samd14|217125|sterile alpha motif domain containing 14
mm9_v1_chr6_+_116288075_116288140	1.21221	GLI1..3.p2	BC053090|March8|71779|membrane-associated ring finger (C3HC4) 8	NM_027920|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr7_-_52230117_52230178	1.21204	GLI1..3.p2	AF320000|Cpt1c|78070|carnitine palmitoyltransferase 1c	NM_153679|Cpt1c|78070|carnitine palmitoyltransferase 1c	BC066155|Cpt1c|78070|carnitine palmitoyltransferase 1c
mm9_v1_chr15_-_25343483_25343542	1.21195	GLI1..3.p2	AK159486|Basp1|70350|brain abundant, membrane attached signal protein 1	AK011545|Basp1|70350|brain abundant, membrane attached signal protein 1	AK046868|Basp1|70350|brain abundant, membrane attached signal protein 1	NM_027395|Basp1|70350|brain abundant, membrane attached signal protein 1
mm9_v1_chr10_-_127058163_127058193	1.208	GLI1..3.p2	AF367720|Lrp1|16971|low density lipoprotein receptor-related protein 1	X67469|Lrp1|16971|low density lipoprotein receptor-related protein 1
mm9_v1_chr19_+_42245078_42245100	1.20799	GLI1..3.p2	BC024801|Zfyve27|319740|zinc finger, FYVE domain containing 27	AK159065|Zfyve27|319740|zinc finger, FYVE domain containing 27	AK170237|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr2_-_113878535_113878550	1.19918	GLI1..3.p2	BC062138|Actc1|11464|actin, alpha, cardiac muscle 1	AK014303|Actc1|11464|actin, alpha, cardiac muscle 1	AK146496|Actc1|11464|actin, alpha, cardiac muscle 1	AK146899|Actc1|11464|actin, alpha, cardiac muscle 1	AK168637|Actc1|11464|actin, alpha, cardiac muscle 1	AK168661|Actc1|11464|actin, alpha, cardiac muscle 1	AK168831|Actc1|11464|actin, alpha, cardiac muscle 1	AK169161|Actc1|11464|actin, alpha, cardiac muscle 1	AK169165|Actc1|11464|actin, alpha, cardiac muscle 1	BC100600|Actc1|11464|actin, alpha, cardiac muscle 1	NM_009608|Actc1|11464|actin, alpha, cardiac muscle 1	AK014307|Actc1|11464|actin, alpha, cardiac muscle 1
mm9_v1_chr5_+_37259780_37259853	1.19761	GLI1..3.p2	AY348866|Ppp2r2c|269643|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform	BC059811|Ppp2r2c|269643|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform	NM_172994|Ppp2r2c|269643|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform
mm9_v1_chr2_+_32143769_32143812	1.19723	GLI1..3.p2	AK077516|Golga2|99412|golgi autoantigen, golgin subfamily a, 2	NM_001080968|Golga2|99412|golgi autoantigen, golgin subfamily a, 2	NM_133852|Golga2|99412|golgi autoantigen, golgin subfamily a, 2
mm9_v1_chr14_-_24823370_24823426	1.19653	GLI1..3.p2	AK142894|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	BC065068|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	NM_010610|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
mm9_v1_chr17_+_35272145_35272203	1.1956	GLI1..3.p2	NM_057171|Bag6|224727|BCL2-associated athanogene 6	AK148796|Bag6|224727|BCL2-associated athanogene 6
mm9_v1_chr17_+_75784448_75784497	1.19554	GLI1..3.p2	AK080024|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chr2_+_35477568_35477592	1.1954	GLI1..3.p2	AK147464|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	AK164475|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr7_-_6649139_6649164	1.19493	GLI1..3.p2	AF111101|Zim1|22776|zinc finger, imprinted 1	BC066196|Zim1|22776|zinc finger, imprinted 1	NM_011769|Zim1|22776|zinc finger, imprinted 1	AK086590|Zim1|22776|zinc finger, imprinted 1
mm9_v1_chr3_+_88987108_88987146	1.19206	GLI1..3.p2	BC068123|Fam189b|68521|family with sequence similarity 189, member B	BC088990|Fam189b|68521|family with sequence similarity 189, member B	NM_001014995|Fam189b|68521|family with sequence similarity 189, member B
mm9_v1_chr5_+_3803163_3803177	1.19195	GLI1..3.p2	NM_001170552|Krit1|79264|KRIT1, ankyrin repeat containing	NM_030675|Krit1|79264|KRIT1, ankyrin repeat containing
mm9_v1_chr6_+_116288073_116288073	1.18684	GLI1..3.p2	AK165647|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr2_-_172765592_172765841	1.18305	GLI1..3.p2	AK020411|Bmp7|12162|bone morphogenetic protein 7	X56906|Bmp7|12162|bone morphogenetic protein 7	BC010771|Bmp7|12162|bone morphogenetic protein 7	NM_007557|Bmp7|12162|bone morphogenetic protein 7
mm9_v1_chr7_-_112548498_112548560	1.18209	GLI1..3.p2	BC018464|Fam160a2|74349|family with sequence similarity 160, member A2	AK154173|Fam160a2|74349|family with sequence similarity 160, member A2	AK155273|Fam160a2|74349|family with sequence similarity 160, member A2	AK085350|Fam160a2|74349|family with sequence similarity 160, member A2	AK159716|Fam160a2|74349|family with sequence similarity 160, member A2	BC063093|Fam160a2|74349|family with sequence similarity 160, member A2	NM_199009|Fam160a2|74349|family with sequence similarity 160, member A2	AK169996|Fam160a2|74349|family with sequence similarity 160, member A2
mm9_v1_chr12_+_45370145_45370261	1.18122	GLI1..3.p2	AK004621|Pnpla8|67452|patatin-like phospholipase domain containing 8	AK163211|Pnpla8|67452|patatin-like phospholipase domain containing 8	AK029616|Pnpla8|67452|patatin-like phospholipase domain containing 8	AK168475|Pnpla8|67452|patatin-like phospholipase domain containing 8	AK145776|Pnpla8|67452|patatin-like phospholipase domain containing 8	AB044139|Pnpla8|67452|patatin-like phospholipase domain containing 8
mm9_v1_chr15_-_101543318_101543337	1.17998	GLI1..3.p2	BC108361|Krt5|110308|keratin 5	BC006780|Krt5|110308|keratin 5	NM_027011|Krt5|110308|keratin 5
mm9_v1_chr7_+_106415956_106416023	1.17608	GLI1..3.p2	BC053039|Mtap6|17760|microtubule-associated protein 6	NM_001048167|Mtap6|17760|microtubule-associated protein 6	NM_010837|Mtap6|17760|microtubule-associated protein 6	AK082709|Mtap6|17760|microtubule-associated protein 6	AK087413|Mtap6|17760|microtubule-associated protein 6
mm9_v1_chr10_-_80306743_80306828	1.1675	GLI1..3.p2	BC072620|Lingo3|237403|leucine rich repeat and Ig domain containing 3	NM_001013758|Lingo3|237403|leucine rich repeat and Ig domain containing 3
mm9_v1_chr7_+_57230683_57230719	1.16735	GLI1..3.p2	AY622226|Nell1|338352|NEL-like 1 (chicken)	NM_001037906|Nell1|338352|NEL-like 1 (chicken)
mm9_v1_chr2_+_156546694_156546736	1.16661	GLI1..3.p2	NM_001042488|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr4_-_129118091_129118098	1.16261	GLI1..3.p2	AK132152|Zbtb8b|215627|zinc finger and BTB domain containing 8b
mm9_v1_chr7_-_86278720_86278866	1.16074	GLI1..3.p2	
mm9_v1_chr16_-_85173978_85173998	1.15984	GLI1..3.p2	AK147543|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr11_-_3352243_3352377	1.15921	GLI1..3.p2	AK167455|Rnf185|193670|ring finger protein 185	AK077638|Rnf185|193670|ring finger protein 185	BC014812|Rnf185|193670|ring finger protein 185	AK149640|Rnf185|193670|ring finger protein 185	AK168904|Rnf185|193670|ring finger protein 185	AK053358|Rnf185|193670|ring finger protein 185	AK034108|Rnf185|193670|ring finger protein 185	NM_145355|Rnf185|193670|ring finger protein 185	AK052436|Rnf185|193670|ring finger protein 185
mm9_v1_chr15_+_81066029_81066052	1.15903	GLI1..3.p2	AK134867|Mchr1|207911|melanin-concentrating hormone receptor 1
mm9_v1_chr13_-_41315751_41315817	1.15841	GLI1..3.p2	AK029855|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	BC098215|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	AF170908|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	NM_019423|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	AK044770|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	AK050397|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
mm9_v1_chr2_-_150730357_150730447	1.15679	GLI1..3.p2	AK018261|Abhd12|76192|abhydrolase domain containing 12	BC002138|Abhd12|76192|abhydrolase domain containing 12
mm9_v1_chr10_-_78054639_78054708	1.15272	GLI1..3.p2	AK004654|Syde1|71709|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	NM_027875|Syde1|71709|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
mm9_v1_chr2_+_37298785_37298902	1.15263	GLI1..3.p2	NM_146121|Rabgap1|227800|RAB GTPase activating protein 1	AK031315|Rabgap1|227800|RAB GTPase activating protein 1	AK021286|Rabgap1|227800|RAB GTPase activating protein 1	BC138337|Rabgap1|227800|RAB GTPase activating protein 1
mm9_v1_chr7_+_28043864_28043895	1.15149	GLI1..3.p2	U96441|Numbl|18223|numb-like
mm9_v1_chr2_+_181287207_181287250	1.15056	GLI1..3.p2	AK135001|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5
mm9_v1_chr12_+_85792371_85792472	1.15022	GLI1..3.p2	BC120496|Lin52|217708|lin-52 homolog (C. elegans)	BC137693|Lin52|217708|lin-52 homolog (C. elegans)	AK030923|Lin52|217708|lin-52 homolog (C. elegans)	NM_173756|Lin52|217708|lin-52 homolog (C. elegans)
mm9_v1_chr7_-_133618335_133618666	1.1468	GLI1..3.p2	AF020526|Sh2b1|20399|SH2B adaptor protein 1	AF380422|Sh2b1|20399|SH2B adaptor protein 1	AF421138|Sh2b1|20399|SH2B adaptor protein 1	AF421139|Sh2b1|20399|SH2B adaptor protein 1	BC051978|Sh2b1|20399|SH2B adaptor protein 1	AK154655|Sh2b1|20399|SH2B adaptor protein 1	AK148085|Sh2b1|20399|SH2B adaptor protein 1	AK168439|Sh2b1|20399|SH2B adaptor protein 1	AK170444|Sh2b1|20399|SH2B adaptor protein 1	AK171328|Sh2b1|20399|SH2B adaptor protein 1	NM_001081459|Sh2b1|20399|SH2B adaptor protein 1	NM_011363|Sh2b1|20399|SH2B adaptor protein 1
mm9_v1_chr9_+_23027995_23028014	1.14652	GLI1..3.p2	AY263358|Bmper|73230|BMP-binding endothelial regulator	BC066153|Bmper|73230|BMP-binding endothelial regulator
mm9_v1_chr2_+_102498798_102498825	1.14556	GLI1..3.p2	U75372|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr11_+_103994160_103994195	1.14234	GLI1..3.p2	AK158806|Crhr1|12921|corticotropin releasing hormone receptor 1	NM_007762|Crhr1|12921|corticotropin releasing hormone receptor 1
mm9_v1_chr11_+_60230781_60230944	1.14135	GLI1..3.p2	AK164644|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	BC052418|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AK012042|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	BC046821|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AK142753|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	BC044901|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene
mm9_v1_chr2_+_91570304_91570382	1.14097	GLI1..3.p2	AK148887|Ambra1|228361|autophagy/beclin 1 regulator 1	AK084557|Ambra1|228361|autophagy/beclin 1 regulator 1	AK155513|Ambra1|228361|autophagy/beclin 1 regulator 1	AK037516|Ambra1|228361|autophagy/beclin 1 regulator 1	AK083596|Ambra1|228361|autophagy/beclin 1 regulator 1	AK169280|Ambra1|228361|autophagy/beclin 1 regulator 1	BC054082|Ambra1|228361|autophagy/beclin 1 regulator 1	BC032293|Ambra1|228361|autophagy/beclin 1 regulator 1
mm9_v1_chr13_+_46765506_46765611	1.14063	GLI1..3.p2	AK090371|C78339|97863|expressed sequence C78339	AK218359|C78339|97863|expressed sequence C78339
mm9_v1_chr8_+_32239179_32239274	1.13512	GLI1..3.p2	AK004356|Rnf122|68867|ring finger protein 122
mm9_v1_chr13_-_14615371_14615494	1.13403	GLI1..3.p2	AK051569|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK084246|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK086170|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK047678|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	NM_001081348|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK053694|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
mm9_v1_chr3_-_107320881_107320937	1.13358	GLI1..3.p2	AK163113|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	AY155578|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	NM_172271|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17
mm9_v1_chr14_+_67852128_67852128	1.1307	GLI1..3.p2	AK053013|Ebf2|13592|early B-cell factor 2	NM_010095|Ebf2|13592|early B-cell factor 2
mm9_v1_chr10_+_85763303_85763334	1.12807	GLI1..3.p2	BC014713|Timp3|21859|tissue inhibitor of metalloproteinase 3
mm9_v1_chr15_-_58046380_58046399	1.12791	GLI1..3.p2	BC027211|Fbxo32|67731|F-box protein 32	AK014612|Fbxo32|67731|F-box protein 32
mm9_v1_chr4_+_120339167_120339220	1.12213	GLI1..3.p2	NM_019563|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	AK012136|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	AK154030|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	BC025116|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	BC080723|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	AF143369|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	BC132360|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	BC132362|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4
mm9_v1_chr7_-_89079168_89079313	1.12143	GLI1..3.p2	AK014849|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	AK044858|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	AK051401|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	AK135495|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3
mm9_v1_chr13_-_74487616_74487686	1.12032	GLI1..3.p2	BC011301|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK169254|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK005350|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK075990|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK162148|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	BC031849|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK010561|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK049590|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK050475|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK147286|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK147624|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK145923|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK029520|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
mm9_v1_chr2_+_121692805_121692894	1.11912	GLI1..3.p2	BC034556|Casc4|319996|cancer susceptibility candidate 4	AK080364|Casc4|319996|cancer susceptibility candidate 4	AK051613|Casc4|319996|cancer susceptibility candidate 4	AK160708|Casc4|319996|cancer susceptibility candidate 4	AY484583|Casc4|319996|cancer susceptibility candidate 4	AY484585|Casc4|319996|cancer susceptibility candidate 4
mm9_v1_chr11_-_118216689_118216724	1.11805	GLI1..3.p2	NM_011594|Timp2|21858|tissue inhibitor of metalloproteinase 2
mm9_v1_chr16_-_52452766_52452798	1.1177	GLI1..3.p2	AY644766|Alcam|11658|activated leukocyte cell adhesion molecule	BC027280|Alcam|11658|activated leukocyte cell adhesion molecule	AB003026|Alcam|11658|activated leukocyte cell adhesion molecule
mm9_v1_chr1_+_163072784_163072870	1.11755	GLI1..3.p2	AK016757|Ankrd45|73844|ankyrin repeat domain 45	NM_028664|Ankrd45|73844|ankyrin repeat domain 45	BC049713|Ankrd45|73844|ankyrin repeat domain 45
mm9_v1_chr12_+_78340039_78340051	1.11733	GLI1..3.p2	AK134537|Fut8|53618|fucosyltransferase 8
mm9_v1_chr9_-_63605745_63605800	1.11638	GLI1..3.p2	AK048626|Smad3|17127|MAD homolog 3 (Drosophila)	NM_016769|Smad3|17127|MAD homolog 3 (Drosophila)
mm9_v1_chrX_+_69208336_69208359	1.11636	GLI1..3.p2	BC060135|Prrg3|208748|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)	NM_001081135|Prrg3|208748|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
mm9_v1_chr11_-_108205199_108205207	1.11551	GLI1..3.p2	AK147084|Prkca|18750|protein kinase C, alpha	NM_011101|Prkca|18750|protein kinase C, alpha
mm9_v1_chrX_+_53599573_53599586	1.1152	GLI1..3.p2	AK142888|Zfp449|78619|zinc finger protein 449	AK036596|Zfp449|78619|zinc finger protein 449	NM_030139|Zfp449|78619|zinc finger protein 449	AK020600|Zfp449|78619|zinc finger protein 449
mm9_v1_chr11_-_70053281_70053355	1.11275	GLI1..3.p2	BC021602|Rnasek|52898|ribonuclease, RNase K	BC021603|Rnasek|52898|ribonuclease, RNase K	AK018709|Rnasek|52898|ribonuclease, RNase K	AK171975|Rnasek|52898|ribonuclease, RNase K	BC024417|Rnasek|52898|ribonuclease, RNase K	AK003548|Rnasek|52898|ribonuclease, RNase K	AK009592|Rnasek|52898|ribonuclease, RNase K	NM_173742|Rnasek|52898|ribonuclease, RNase K
mm9_v1_chr11_+_58120583_58120673	1.11167	GLI1..3.p2	BC055041|Zfp692|103836|zinc finger protein 692	AK154896|Zfp692|103836|zinc finger protein 692	AK031177|Zfp692|103836|zinc finger protein 692	BC145470|Zfp692|103836|zinc finger protein 692	BC150776|Zfp692|103836|zinc finger protein 692
mm9_v1_chr14_+_56179818_56179917	1.11141	GLI1..3.p2	BC021305|Dcaf11|28199|DDB1 and CUL4 associated factor 11	AK152395|Dcaf11|28199|DDB1 and CUL4 associated factor 11	BC037001|Dcaf11|28199|DDB1 and CUL4 associated factor 11
mm9_v1_chr11_-_65601657_65601750	1.11067	GLI1..3.p2	AK187893|Map2k4|26398|mitogen-activated protein kinase kinase 4	U18310|Map2k4|26398|mitogen-activated protein kinase kinase 4
mm9_v1_chr5_-_115750649_115750671	1.11044	GLI1..3.p2	BC085492|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr12_+_114047124_114047205	1.10884	GLI1..3.p2	AK161400|BC022687|217887|cDNA sequence BC022687	AK081297|BC022687|217887|cDNA sequence BC022687	BC090976|BC022687|217887|cDNA sequence BC022687	NM_145450|BC022687|217887|cDNA sequence BC022687
mm9_v1_chr2_+_37307751_37307773	1.1073	GLI1..3.p2	AK044346|Rabgap1|227800|RAB GTPase activating protein 1	NM_001033960|Rabgap1|227800|RAB GTPase activating protein 1
mm9_v1_chr15_+_7090525_7090548	1.10413	GLI1..3.p2	D17444|Lifr|16880|leukemia inhibitory factor receptor	D26177|Lifr|16880|leukemia inhibitory factor receptor	S73495|Lifr|16880|leukemia inhibitory factor receptor	S73496|Lifr|16880|leukemia inhibitory factor receptor	NM_013584|Lifr|16880|leukemia inhibitory factor receptor	BC031929|Lifr|16880|leukemia inhibitory factor receptor
mm9_v1_chr15_-_84388245_84388282	1.10379	GLI1..3.p2	BC094559|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like	NM_177630|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like
mm9_v1_chr9_+_121686724_121687001	1.10256	GLI1..3.p2	BC125576|Kbtbd5|72330|kelch repeat and BTB (POZ) domain containing 5	BC137889|Kbtbd5|72330|kelch repeat and BTB (POZ) domain containing 5	NM_028202|Kbtbd5|72330|kelch repeat and BTB (POZ) domain containing 5	AK009491|Kbtbd5|72330|kelch repeat and BTB (POZ) domain containing 5	AK078669|Kbtbd5|72330|kelch repeat and BTB (POZ) domain containing 5	AK160799|Kbtbd5|72330|kelch repeat and BTB (POZ) domain containing 5
mm9_v1_chr8_+_125778094_125778211	1.10236	GLI1..3.p2	AK133363|Zfp276|57247|zinc finger protein (C2H2 type) 276	NM_020497|Zfp276|57247|zinc finger protein (C2H2 type) 276	AK028939|Zfp276|57247|zinc finger protein (C2H2 type) 276	AK043258|Zfp276|57247|zinc finger protein (C2H2 type) 276	BC066056|Zfp276|57247|zinc finger protein (C2H2 type) 276
mm9_v1_chr5_-_68238654_68238670	1.09961	GLI1..3.p2	DQ503480|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK151709|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503479|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_001038999|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_009727|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503477|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr11_+_59476016_59476061	1.0976	GLI1..3.p2	BC063067|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr17_-_80689434_80689517	1.09669	GLI1..3.p2	BC079618|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	BC066091|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	BC065169|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	AK042947|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
mm9_v1_chr7_-_86293852_86293959	1.0937	GLI1..3.p2	AB021130|Mfge8|17304|milk fat globule-EGF factor 8 protein	AB025280|Mfge8|17304|milk fat globule-EGF factor 8 protein	Y11684|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK209209|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC018577|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC003904|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC003892|Mfge8|17304|milk fat globule-EGF factor 8 protein	M38337|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK089211|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK145183|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK169997|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK170935|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK171143|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK148371|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK087555|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK152088|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK155047|Mfge8|17304|milk fat globule-EGF factor 8 protein	NM_001045489|Mfge8|17304|milk fat globule-EGF factor 8 protein	NM_008594|Mfge8|17304|milk fat globule-EGF factor 8 protein
mm9_v1_chr5_+_111308801_111308858	1.09205	GLI1..3.p2	NM_024477|Ttc28|209683|tetratricopeptide repeat domain 28	AK009368|Ttc28|209683|tetratricopeptide repeat domain 28
mm9_v1_chr11_+_58120557_58120580	1.09039	GLI1..3.p2	AK170229|Zfp692|103836|zinc finger protein 692	AK080545|Zfp692|103836|zinc finger protein 692	NM_001040686|Zfp692|103836|zinc finger protein 692	NM_182996|Zfp692|103836|zinc finger protein 692
mm9_v1_chr7_+_135754831_135754990	1.08912	GLI1..3.p2	AK150418|Inpp5f|101490|inositol polyphosphate-5-phosphatase F	AK154996|Inpp5f|101490|inositol polyphosphate-5-phosphatase F	AK030870|Inpp5f|101490|inositol polyphosphate-5-phosphatase F	NM_178641|Inpp5f|101490|inositol polyphosphate-5-phosphatase F	AK129249|Inpp5f|101490|inositol polyphosphate-5-phosphatase F	BC125437|Inpp5f|101490|inositol polyphosphate-5-phosphatase F	BC137700|Inpp5f|101490|inositol polyphosphate-5-phosphatase F
mm9_v1_chr14_+_34767188_34767245	1.0871	GLI1..3.p2	BC083133|Rbp3|19661|retinol binding protein 3, interstitial	BC017610|Rbp3|19661|retinol binding protein 3, interstitial	NM_015745|Rbp3|19661|retinol binding protein 3, interstitial	BC040282|Rbp3|19661|retinol binding protein 3, interstitial	BC042480|Rbp3|19661|retinol binding protein 3, interstitial
mm9_v1_chr19_+_4100914_4101127	1.08563	GLI1..3.p2	BC048150|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	BC044893|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1
mm9_v1_chr2_+_11699379_11699379	1.07939	GLI1..3.p2	NM_177268|Ankrd16|320816|ankyrin repeat domain 16
mm9_v1_chr9_+_123438903_123439004	1.0785	GLI1..3.p2	AK089174|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AK171080|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AK122390|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	EF437383|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AK161111|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	NM_030692|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AJ297526|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	BC117752|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	BC117753|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)
mm9_v1_chr9_+_87039136_87039147	1.07653	GLI1..3.p2	NM_001101482|Mrap2|244958|melanocortin 2 receptor accessory protein 2	NM_001177731|Mrap2|244958|melanocortin 2 receptor accessory protein 2
mm9_v1_chr19_+_8738840_8738844	1.07549	GLI1..3.p2	AK081248|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS
mm9_v1_chr6_+_116287992_116288071	1.07338	GLI1..3.p2	AK154976|March8|71779|membrane-associated ring finger (C3HC4) 8	BC050908|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr6_+_56782042_56782055	1.07105	GLI1..3.p2	BC043129|Fkbp9|27055|FK506 binding protein 9	NM_012056|Fkbp9|27055|FK506 binding protein 9
mm9_v1_chr2_+_157854434_157854436	1.0706	GLI1..3.p2	AK152125|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	AK152220|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B
mm9_v1_chr2_-_44965603_44965763	1.07058	GLI1..3.p2	AK012377|Zeb2|24136|zinc finger E-box binding homeobox 2	AF033116|Zeb2|24136|zinc finger E-box binding homeobox 2	AK141157|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr2_-_25174662_25174740	1.06925	GLI1..3.p2	AK090286|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_001177656|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_001177657|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_008169|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)
mm9_v1_chr17_+_37182986_37183080	1.06369	GLI1..3.p2	AF114168|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1	AF008649|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1
mm9_v1_chr7_+_116895582_116895839	1.06231	GLI1..3.p2	AK015280|4930431P19Rik|73886|RIKEN cDNA 4930431P19 gene	AK031634|4930431P19Rik|73886|RIKEN cDNA 4930431P19 gene	AK050574|4930431P19Rik|73886|RIKEN cDNA 4930431P19 gene
mm9_v1_chr3_-_154756325_154756369	1.06188	GLI1..3.p2	AJ276067|Fpgt|75540|fucose-1-phosphate guanylyltransferase	AK028640|Fpgt|75540|fucose-1-phosphate guanylyltransferase	BC110552|Fpgt|75540|fucose-1-phosphate guanylyltransferase	AK045369|Fpgt|75540|fucose-1-phosphate guanylyltransferase	BC110551|Fpgt|75540|fucose-1-phosphate guanylyltransferase	NM_029330|Fpgt|75540|fucose-1-phosphate guanylyltransferase
mm9_v1_chr13_-_55464135_55464143	1.05933	GLI1..3.p2	BC055327|Lman2|66890|lectin, mannose-binding 2	NM_025828|Lman2|66890|lectin, mannose-binding 2
mm9_v1_chr2_-_110203264_110203281	1.05853	GLI1..3.p2	AK159648|Fibin|67606|fin bud initiation factor homolog (zebrafish)
mm9_v1_chr7_-_91754236_91754303	1.05737	GLI1..3.p2	BC010767|Fah|14085|fumarylacetoacetate hydrolase	Z11774|Fah|14085|fumarylacetoacetate hydrolase	M84145|Fah|14085|fumarylacetoacetate hydrolase	AK143759|Fah|14085|fumarylacetoacetate hydrolase
mm9_v1_chr11_-_62542594_62542594	1.05173	GLI1..3.p2	AF281141|Zfp287|170740|zinc finger protein 287	NM_133208|Zfp287|170740|zinc finger protein 287
mm9_v1_chr8_-_80248234_80248246	1.05093	GLI1..3.p2	AK135555|Ednra|13617|endothelin receptor type A	AK043210|Ednra|13617|endothelin receptor type A
mm9_v1_chr15_-_84387921_84388066	1.05043	GLI1..3.p2	BC058638|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like
mm9_v1_chr15_-_79335644_79335670	1.04476	GLI1..3.p2	U11075|Kcnj4|16520|potassium inwardly-rectifying channel, subfamily J, member 4	BC120593|Kcnj4|16520|potassium inwardly-rectifying channel, subfamily J, member 4	BC137594|Kcnj4|16520|potassium inwardly-rectifying channel, subfamily J, member 4	NM_008427|Kcnj4|16520|potassium inwardly-rectifying channel, subfamily J, member 4	S71382|Kcnj4|16520|potassium inwardly-rectifying channel, subfamily J, member 4
mm9_v1_chrX_+_20937988_20937991	1.04354	GLI1..3.p2	AK032684|Gm5124|331392|predicted pseudogene 5124	NM_198633|Gm5124|331392|predicted pseudogene 5124
mm9_v1_chr9_+_78039786_78039851	1.04346	GLI1..3.p2	AK008400|Gsta4|14860|glutathione S-transferase, alpha 4	AK008189|Gsta4|14860|glutathione S-transferase, alpha 4	AK011841|Gsta4|14860|glutathione S-transferase, alpha 4	AK019271|Gsta4|14860|glutathione S-transferase, alpha 4	AK009668|Gsta4|14860|glutathione S-transferase, alpha 4	AK010098|Gsta4|14860|glutathione S-transferase, alpha 4	AK008193|Gsta4|14860|glutathione S-transferase, alpha 4	AK008490|Gsta4|14860|glutathione S-transferase, alpha 4	AK011177|Gsta4|14860|glutathione S-transferase, alpha 4	BC012639|Gsta4|14860|glutathione S-transferase, alpha 4	L06047|Gsta4|14860|glutathione S-transferase, alpha 4
mm9_v1_chr15_-_27955680_27955732	1.04214	GLI1..3.p2	BC067059|Trio|223435|triple functional domain (PTPRF interacting)
mm9_v1_chr19_-_24299471_24299519	1.04116	GLI1..3.p2	NM_011597|Tjp2|21873|tight junction protein 2
mm9_v1_chr9_+_85736444_85736534	1.03894	GLI1..3.p2	NM_001164792|Tpbg|21983|trophoblast glycoprotein	AK165553|Tpbg|21983|trophoblast glycoprotein	BC058198|Tpbg|21983|trophoblast glycoprotein	AK143519|Tpbg|21983|trophoblast glycoprotein
mm9_v1_chr9_+_107853281_107853324	1.03883	GLI1..3.p2	AK012948|Traip|22036|TRAF-interacting protein	NM_011634|Traip|22036|TRAF-interacting protein	AK040001|Traip|22036|TRAF-interacting protein	U77844|Traip|22036|TRAF-interacting protein	AK012786|Traip|22036|TRAF-interacting protein	BC017374|Traip|22036|TRAF-interacting protein
mm9_v1_chr11_+_58680717_58680792	1.03479	GLI1..3.p2	AK030099|2810021J22Rik|69944|RIKEN cDNA 2810021J22 gene	AK134479|2810021J22Rik|69944|RIKEN cDNA 2810021J22 gene	BC058081|2810021J22Rik|69944|RIKEN cDNA 2810021J22 gene	NM_172403|2810021J22Rik|69944|RIKEN cDNA 2810021J22 gene
mm9_v1_chr19_+_42245102_42245124	1.03457	GLI1..3.p2	BC042595|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr17_+_79234855_79234969	1.03442	GLI1..3.p2	AK148331|Ccdc75|53951|coiled-coil domain containing 75	NM_181649|Ccdc75|53951|coiled-coil domain containing 75	BC092522|Ccdc75|53951|coiled-coil domain containing 75	AK049867|Ccdc75|53951|coiled-coil domain containing 75	BC047998|Ccdc75|53951|coiled-coil domain containing 75	BC138310|Ccdc75|53951|coiled-coil domain containing 75	AK009084|Ccdc75|53951|coiled-coil domain containing 75
mm9_v1_chr16_+_38089086_38089192	1.03386	GLI1..3.p2	AB066114|Gsk3b|56637|glycogen synthase kinase 3 beta	NM_019827|Gsk3b|56637|glycogen synthase kinase 3 beta	BC060743|Gsk3b|56637|glycogen synthase kinase 3 beta
mm9_v1_chr2_-_32816770_32816770	1.02754	GLI1..3.p2	BC049146|Lrsam1|227738|leucine rich repeat and sterile alpha motif containing 1	NM_199302|Lrsam1|227738|leucine rich repeat and sterile alpha motif containing 1
mm9_v1_chr13_-_55614750_55614802	1.01939	GLI1..3.p2	AK003019|Pdlim7|67399|PDZ and LIM domain 7	BC052698|Pdlim7|67399|PDZ and LIM domain 7	AK142933|Pdlim7|67399|PDZ and LIM domain 7	AK003338|Pdlim7|67399|PDZ and LIM domain 7	AK010141|Pdlim7|67399|PDZ and LIM domain 7	AK128987|Pdlim7|67399|PDZ and LIM domain 7	BC049565|Pdlim7|67399|PDZ and LIM domain 7	AK010339|Pdlim7|67399|PDZ and LIM domain 7	AK033091|Pdlim7|67399|PDZ and LIM domain 7	AK049902|Pdlim7|67399|PDZ and LIM domain 7	AK077998|Pdlim7|67399|PDZ and LIM domain 7	AK167476|Pdlim7|67399|PDZ and LIM domain 7	NM_001114087|Pdlim7|67399|PDZ and LIM domain 7	NM_001114088|Pdlim7|67399|PDZ and LIM domain 7	NM_026131|Pdlim7|67399|PDZ and LIM domain 7
mm9_v1_chr9_+_123836859_123837183	1.01914	GLI1..3.p2	NM_009878|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	AK132906|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	AK144737|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	U19597|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	BC013898|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	U20497|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	AK140808|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
mm9_v1_chr7_+_72838302_72838367	1.01812	GLI1..3.p2	NM_026795|Tm2d3|68634|TM2 domain containing 3	NM_178056|Tm2d3|68634|TM2 domain containing 3	AK003917|Tm2d3|68634|TM2 domain containing 3	BC024620|Tm2d3|68634|TM2 domain containing 3
mm9_v1_chr9_+_26559146_26559146	1.01809	GLI1..3.p2	BC034655|B3gat1|76898|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	NM_029792|B3gat1|76898|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)
mm9_v1_chr3_+_90070455_90070469	1.01567	GLI1..3.p2	NM_201407|Dennd4b|229541|DENN/MADD domain containing 4B	AK155638|Dennd4b|229541|DENN/MADD domain containing 4B
mm9_v1_chr17_+_74888823_74888973	1.01497	GLI1..3.p2	AK166347|Yipf4|67864|Yip1 domain family, member 4	AK009618|Yipf4|67864|Yip1 domain family, member 4	AK083301|Yipf4|67864|Yip1 domain family, member 4	NM_026417|Yipf4|67864|Yip1 domain family, member 4	AK017721|Yipf4|67864|Yip1 domain family, member 4	AK017722|Yipf4|67864|Yip1 domain family, member 4	AK159227|Yipf4|67864|Yip1 domain family, member 4	BC003936|Yipf4|67864|Yip1 domain family, member 4
mm9_v1_chr7_-_125386862_125387193	1.0146	GLI1..3.p2	AK220328|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	AK041264|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	AK047829|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	AK157798|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	AK049391|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	NM_001031814|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
mm9_v1_chr3_+_51288108_51288406	1.01456	GLI1..3.p2	AK087967|Rab33b|19338|RAB33B, member of RAS oncogene family	AK144706|Rab33b|19338|RAB33B, member of RAS oncogene family	AK004974|Rab33b|19338|RAB33B, member of RAS oncogene family	AK159674|Rab33b|19338|RAB33B, member of RAS oncogene family	AB232629|Rab33b|19338|RAB33B, member of RAS oncogene family	AK170483|Rab33b|19338|RAB33B, member of RAS oncogene family	AK203331|Rab33b|19338|RAB33B, member of RAS oncogene family
mm9_v1_chr9_+_43877511_43877533	1.01018	GLI1..3.p2	NM_016808|Usp2|53376|ubiquitin specific peptidase 2	BC017517|Usp2|53376|ubiquitin specific peptidase 2	AY255640|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr9_+_99529985_99530013	1.00893	GLI1..3.p2	AK012132|Dzip1l|72507|DAZ interacting protein 1-like	AK208844|Dzip1l|72507|DAZ interacting protein 1-like	BC099950|Dzip1l|72507|DAZ interacting protein 1-like	NM_028258|Dzip1l|72507|DAZ interacting protein 1-like
mm9_v1_chr4_-_12098948_12098955	1.00814	GLI1..3.p2	BC020162|Fam92a|68099|family with sequence similarity 92, member A
mm9_v1_chrX_+_137199474_137199494	1.00735	GLI1..3.p2	Y18881|Mid2|23947|midline 2
mm9_v1_chr11_-_120012603_120012679	1.00594	GLI1..3.p2	AK159948|Slc38a10|72055|solute carrier family 38, member 10	AK165672|Slc38a10|72055|solute carrier family 38, member 10	BC082300|Slc38a10|72055|solute carrier family 38, member 10	AK090050|Slc38a10|72055|solute carrier family 38, member 10	NM_001164798|Slc38a10|72055|solute carrier family 38, member 10	NM_001164799|Slc38a10|72055|solute carrier family 38, member 10	NM_001164800|Slc38a10|72055|solute carrier family 38, member 10	NM_001164801|Slc38a10|72055|solute carrier family 38, member 10	NM_001164802|Slc38a10|72055|solute carrier family 38, member 10	NM_024249|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr18_-_35374663_35374683	1.00573	GLI1..3.p2	AK122278|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK036155|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK044705|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK046774|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	NM_178005|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2
mm9_v1_chr6_-_42643001_42643085	1.00072	GLI1..3.p2	AK076242|Fam115a|77574|family with sequence similarity 115, member A	AK013025|Fam115a|77574|family with sequence similarity 115, member A	AK148593|Fam115a|77574|family with sequence similarity 115, member A	AK053509|Fam115a|77574|family with sequence similarity 115, member A	NM_029930|Fam115a|77574|family with sequence similarity 115, member A	BC031718|Fam115a|77574|family with sequence similarity 115, member A
mm9_v1_chr2_-_84518194_84518206	0.999991	GLI1..3.p2	BC013544|Tmx2|66958|thioredoxin-related transmembrane protein 2	BC110994|Tmx2|66958|thioredoxin-related transmembrane protein 2	AK009759|Tmx2|66958|thioredoxin-related transmembrane protein 2	NM_025868|Tmx2|66958|thioredoxin-related transmembrane protein 2
mm9_v1_chr8_+_128519001_128519113	0.999431	GLI1..3.p2	NM_008430|Kcnk1|16525|potassium channel, subfamily K, member 1	AF033017|Kcnk1|16525|potassium channel, subfamily K, member 1	AK137224|Kcnk1|16525|potassium channel, subfamily K, member 1
mm9_v1_chr9_+_57810230_57810233	0.996081	GLI1..3.p2	AK019344|Sema7a|20361|sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A
mm9_v1_chr4_-_12098960_12099006	0.993936	GLI1..3.p2	BC055848|Fam92a|68099|family with sequence similarity 92, member A	AK013129|Fam92a|68099|family with sequence similarity 92, member A	AK019574|Fam92a|68099|family with sequence similarity 92, member A
mm9_v1_chr3_+_36050001_36050053	0.992186	GLI1..3.p2	NM_001101478|D3Ertd254e|241944|DNA segment, Chr 3, ERATO Doi 254, expressed	AK153849|D3Ertd254e|241944|DNA segment, Chr 3, ERATO Doi 254, expressed
mm9_v1_chr1_+_122237151_122237184	0.991263	GLI1..3.p2	AK144471|C1ql2|226359|complement component 1, q subcomponent-like 2	BC040774|C1ql2|226359|complement component 1, q subcomponent-like 2	NM_207233|C1ql2|226359|complement component 1, q subcomponent-like 2
mm9_v1_chr2_-_168567422_168567434	0.985382	GLI1..3.p2	BC075718|Atp9a|11981|ATPase, class II, type 9A
mm9_v1_chr5_-_142985612_142985614	0.983559	GLI1..3.p2	AK079539|Radil|231858|Ras association and DIL domains
mm9_v1_chr7_-_53080056_53080125	0.980689	GLI1..3.p2	BC029692|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14	AK044725|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14	AK080732|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14	BC031753|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14	NM_145963|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14	AK030711|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14
mm9_v1_chr6_-_35489875_35489887	0.980032	GLI1..3.p2	NM_008098|Mtpn|14489|myotrophin
mm9_v1_chr6_-_86798929_86799146	0.972455	GLI1..3.p2	BC096561|2610306M01Rik|67170|RIKEN cDNA 2610306M01 gene	BC058130|2610306M01Rik|67170|RIKEN cDNA 2610306M01 gene
mm9_v1_chr4_-_129118034_129118085	0.96927	GLI1..3.p2	BC023839|Zbtb8b|215627|zinc finger and BTB domain containing 8b	AK140914|Zbtb8b|215627|zinc finger and BTB domain containing 8b	AK163930|Zbtb8b|215627|zinc finger and BTB domain containing 8b	NM_153541|Zbtb8b|215627|zinc finger and BTB domain containing 8b
mm9_v1_chr2_-_25463924_25464009	0.967572	GLI1..3.p2	BC085507|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	NM_001024616|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC021476|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC020111|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK081440|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK171643|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC058585|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC023692|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC051138|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK045520|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK081397|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK157020|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK077311|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK143678|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene
mm9_v1_chr12_-_60162268_60162333	0.964538	GLI1..3.p2	AK089083|Trappc6b|78232|trafficking protein particle complex 6B
mm9_v1_chr11_+_4035162_4035238	0.958714	GLI1..3.p2	NM_027859|Rnf215|71673|ring finger protein 215	AK154140|Rnf215|71673|ring finger protein 215	AK002414|Rnf215|71673|ring finger protein 215	AK047194|Rnf215|71673|ring finger protein 215	BC115907|Rnf215|71673|ring finger protein 215	BC115908|Rnf215|71673|ring finger protein 215	BC103627|Rnf215|71673|ring finger protein 215
mm9_v1_chr4_+_135700717_135701086	0.958448	GLI1..3.p2	AK014306|Id3|15903|inhibitor of DNA binding 3	AK201456|Id3|15903|inhibitor of DNA binding 3	AK192106|Id3|15903|inhibitor of DNA binding 3	AK192107|Id3|15903|inhibitor of DNA binding 3	AK192467|Id3|15903|inhibitor of DNA binding 3	AK199050|Id3|15903|inhibitor of DNA binding 3	AK200444|Id3|15903|inhibitor of DNA binding 3	AK202308|Id3|15903|inhibitor of DNA binding 3
mm9_v1_chr15_-_88979923_88980035	0.956497	GLI1..3.p2	AK161190|Mapk11|19094|mitogen-activated protein kinase 11	BC057211|Mapk11|19094|mitogen-activated protein kinase 11	AK161562|Mapk11|19094|mitogen-activated protein kinase 11	BC064737|Mapk11|19094|mitogen-activated protein kinase 11	AK144846|Mapk11|19094|mitogen-activated protein kinase 11	AF135185|Mapk11|19094|mitogen-activated protein kinase 11	BC092526|Mapk11|19094|mitogen-activated protein kinase 11	NM_011161|Mapk11|19094|mitogen-activated protein kinase 11
mm9_v1_chr12_+_21117704_21117848	0.95646	GLI1..3.p2	AK172944|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	BC096022|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm9_v1_chr7_-_117129643_117129675	0.954628	GLI1..3.p2	AK167021|Tmem41b|233724|transmembrane protein 41B	AK166845|Tmem41b|233724|transmembrane protein 41B
mm9_v1_chr4_+_126872429_126872476	0.95448	GLI1..3.p2	BC058433|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3
mm9_v1_chr6_-_112897259_112897274	0.954055	GLI1..3.p2	AK045508|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	AK051262|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	NM_080448|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3
mm9_v1_chr10_+_115614313_115614481	0.953382	GLI1..3.p2	NM_001161839|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	NM_001161838|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	NM_001161840|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	AF041866|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	AF129509|Ptprr|19279|protein tyrosine phosphatase, receptor type, R
mm9_v1_chr9_+_75192367_75192390	0.949659	GLI1..3.p2	AK211560|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5	AK215403|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5	AK216405|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5	AK206251|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5
mm9_v1_chr17_-_14831095_14831102	0.949316	GLI1..3.p2	L07803|Thbs2|21826|thrombospondin 2	M64866|Thbs2|21826|thrombospondin 2	AK132508|Thbs2|21826|thrombospondin 2
mm9_v1_chr7_+_28516407_28516529	0.94095	GLI1..3.p2	AK149305|Zfp60|22718|zinc finger protein 60	NM_009560|Zfp60|22718|zinc finger protein 60	NM_029531|Zfp60|22718|zinc finger protein 60	AK044869|Zfp60|22718|zinc finger protein 60	AK028717|Zfp60|22718|zinc finger protein 60
mm9_v1_chr5_-_23857421_23857489	0.939755	GLI1..3.p2	AF012868|Kcnh2|16511|potassium voltage-gated channel, subfamily H (eag-related), member 2	NM_013569|Kcnh2|16511|potassium voltage-gated channel, subfamily H (eag-related), member 2
mm9_v1_chr12_+_75385267_75385319	0.939726	GLI1..3.p2	AK007020|1700086L19Rik|74284|RIKEN cDNA 1700086L19 gene
mm9_v1_chr6_+_86578167_86578196	0.937919	GLI1..3.p2	DQ841260|Asprv1|67855|aspartic peptidase, retroviral-like 1	NM_026414|Asprv1|67855|aspartic peptidase, retroviral-like 1	BC057938|Asprv1|67855|aspartic peptidase, retroviral-like 1
mm9_v1_chr13_+_46513668_46513668	0.937285	GLI1..3.p2	NM_001081425|Rbm24|666794|RNA binding motif protein 24
mm9_v1_chr3_-_138738020_138738033	0.937102	GLI1..3.p2	BC011279|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1
mm9_v1_chr16_-_14201162_14201172	0.936266	GLI1..3.p2	AK008768|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle
mm9_v1_chr17_-_23877115_23877392	0.919466	GLI1..3.p2	AK044092|Paqr4|76498|progestin and adipoQ receptor family member IV	AB041564|Paqr4|76498|progestin and adipoQ receptor family member IV	AY424293|Paqr4|76498|progestin and adipoQ receptor family member IV	BC026921|Paqr4|76498|progestin and adipoQ receptor family member IV	AK152676|Paqr4|76498|progestin and adipoQ receptor family member IV	BC011185|Paqr4|76498|progestin and adipoQ receptor family member IV	NM_023824|Paqr4|76498|progestin and adipoQ receptor family member IV	AK033625|Paqr4|76498|progestin and adipoQ receptor family member IV	AK005142|Paqr4|76498|progestin and adipoQ receptor family member IV	AK044486|Paqr4|76498|progestin and adipoQ receptor family member IV
mm9_v1_chr7_+_30088984_30089023	0.919455	GLI1..3.p2	BC052348|Dpf1|29861|D4, zinc and double PHD fingers family 1	NM_013874|Dpf1|29861|D4, zinc and double PHD fingers family 1	U48238|Dpf1|29861|D4, zinc and double PHD fingers family 1
mm9_v1_chrX_+_132806184_132806337	0.917442	GLI1..3.p2	L10905|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr2_-_130223285_130223364	0.917369	GLI1..3.p2	BC003713|Cpxm1|56264|carboxypeptidase X 1 (M14 family)	AF077738|Cpxm1|56264|carboxypeptidase X 1 (M14 family)	NM_019696|Cpxm1|56264|carboxypeptidase X 1 (M14 family)
mm9_v1_chr1_-_37921651_37921692	0.913366	GLI1..3.p2	AK170053|Tsga10|211484|testis specific 10
mm9_v1_chr8_-_89996089_89996284	0.911324	GLI1..3.p2	AK161846|Cbln1|12404|cerebellin 1 precursor protein	BC051956|Cbln1|12404|cerebellin 1 precursor protein	BC055730|Cbln1|12404|cerebellin 1 precursor protein	BC132120|Cbln1|12404|cerebellin 1 precursor protein	BC132122|Cbln1|12404|cerebellin 1 precursor protein
mm9_v1_chr2_+_35477498_35477550	0.90865	GLI1..3.p2	AK147593|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	NM_001114124|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr15_+_51871652_51871713	0.908158	GLI1..3.p2	AK046414|Aard|239435|alanine and arginine rich domain containing protein	NM_175503|Aard|239435|alanine and arginine rich domain containing protein	BC089505|Aard|239435|alanine and arginine rich domain containing protein	AY134665|Aard|239435|alanine and arginine rich domain containing protein
mm9_v1_chr16_-_88932497_88932509	0.907857	GLI1..3.p2	BC119613|AY026312|170939|cDNA sequence AY026312	BC119614|AY026312|170939|cDNA sequence AY026312	BC127239|AY026312|170939|cDNA sequence AY026312	BC127240|AY026312|170939|cDNA sequence AY026312	AY026312|AY026312|170939|cDNA sequence AY026312	NM_133359|AY026312|170939|cDNA sequence AY026312	AK086935|AY026312|170939|cDNA sequence AY026312
mm9_v1_chr13_-_3803547_3803563	0.906417	GLI1..3.p2	BC005457|Calml3|70405|calmodulin-like 3	AK010118|Calml3|70405|calmodulin-like 3	NM_027416|Calml3|70405|calmodulin-like 3
mm9_v1_chr8_+_12915892_12915957	0.905913	GLI1..3.p2	NM_178076|Mcf2l|17207|mcf.2 transforming sequence-like	AK082849|Mcf2l|17207|mcf.2 transforming sequence-like	AK048898|Mcf2l|17207|mcf.2 transforming sequence-like	BC058622|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr7_+_138009310_138009466	0.904448	GLI1..3.p2	AK053879|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	AK083340|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	AK044224|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	BC020017|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	NM_133942|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm9_v1_chrX_-_100101807_100101896	0.903506	GLI1..3.p2	DQ316773|Dmrtc1a|70887|DMRT-like family C1a	DQ316774|Dmrtc1a|70887|DMRT-like family C1a	NM_029378|Dmrtc1a|70887|DMRT-like family C1a	NM_001038616|Dmrtc1a|70887|DMRT-like family C1a	AK006548|Dmrtc1a|70887|DMRT-like family C1a
mm9_v1_chr5_+_25021884_25021967	0.903315	GLI1..3.p2	AK133375|Cct8l1|242891|chaperonin containing TCP1, subunit 8 (theta)-like 1	NM_198621|Cct8l1|242891|chaperonin containing TCP1, subunit 8 (theta)-like 1	BC050797|Cct8l1|242891|chaperonin containing TCP1, subunit 8 (theta)-like 1
mm9_v1_chr17_-_33170297_33170352	0.902393	GLI1..3.p2	BC056193|Zfp763|73451|zinc finger protein 763	AK088750|Zfp763|73451|zinc finger protein 763	AK141711|Zfp763|73451|zinc finger protein 763	NM_028543|Zfp763|73451|zinc finger protein 763
mm9_v1_chr2_+_157854427_157854433	0.899784	GLI1..3.p2	AK045404|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B
mm9_v1_chr2_+_32431237_32431362	0.899542	GLI1..3.p2	BC094346|Pip5kl1|227733|phosphatidylinositol-4-phosphate 5-kinase-like 1	NM_198191|Pip5kl1|227733|phosphatidylinositol-4-phosphate 5-kinase-like 1	BC117018|Pip5kl1|227733|phosphatidylinositol-4-phosphate 5-kinase-like 1	BC119037|Pip5kl1|227733|phosphatidylinositol-4-phosphate 5-kinase-like 1	AK164998|Pip5kl1|227733|phosphatidylinositol-4-phosphate 5-kinase-like 1
mm9_v1_chr1_+_196446006_196446022	0.896966	GLI1..3.p2	NM_008882|Plxna2|18845|plexin A2
mm9_v1_chr15_-_66801093_66801186	0.896378	GLI1..3.p2	BC141246|Ndrg1|17988|N-myc downstream regulated gene 1	BC171968|Ndrg1|17988|N-myc downstream regulated gene 1	BC015282|Ndrg1|17988|N-myc downstream regulated gene 1	U52073|Ndrg1|17988|N-myc downstream regulated gene 1	BC071235|Ndrg1|17988|N-myc downstream regulated gene 1
mm9_v1_chr6_+_4853319_4853431	0.896225	GLI1..3.p2	AB091828|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	NM_181595|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	AK158559|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	BC053748|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm9_v1_chr17_-_46281016_46281172	0.896194	GLI1..3.p2	AK165820|Rsph9|75564|radial spoke head 9 homolog (Chlamydomonas)	BC019423|Rsph9|75564|radial spoke head 9 homolog (Chlamydomonas)	AK006440|Rsph9|75564|radial spoke head 9 homolog (Chlamydomonas)	NM_029338|Rsph9|75564|radial spoke head 9 homolog (Chlamydomonas)
mm9_v1_chr17_+_46818005_46818130	0.895756	GLI1..3.p2	AK010863|Mea1|17256|male enhanced antigen 1	AK008305|Mea1|17256|male enhanced antigen 1	AK008194|Mea1|17256|male enhanced antigen 1	AK010904|Mea1|17256|male enhanced antigen 1	AK010962|Mea1|17256|male enhanced antigen 1	AK012617|Mea1|17256|male enhanced antigen 1	AK005369|Mea1|17256|male enhanced antigen 1	AK005106|Mea1|17256|male enhanced antigen 1	L10401|Mea1|17256|male enhanced antigen 1	M27938|Mea1|17256|male enhanced antigen 1	NM_010787|Mea1|17256|male enhanced antigen 1	AK011189|Mea1|17256|male enhanced antigen 1	D17341|Mea1|17256|male enhanced antigen 1
mm9_v1_chr3_-_107820705_107820751	0.895337	GLI1..3.p2	J03952|Gstm1|14862|glutathione S-transferase, mu 1	BC003822|Gstm1|14862|glutathione S-transferase, mu 1	BC091763|Gstm1|14862|glutathione S-transferase, mu 1	BC046758|Gstm1|14862|glutathione S-transferase, mu 1
mm9_v1_chr4_+_125964037_125964049	0.893183	GLI1..3.p2	BC065148|Col8a2|329941|collagen, type VIII, alpha 2	NM_199473|Col8a2|329941|collagen, type VIII, alpha 2	BC080317|Col8a2|329941|collagen, type VIII, alpha 2
mm9_v1_chr18_-_10610261_10610307	0.892919	GLI1..3.p2	BC151069|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	BC151077|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	BC172153|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm9_v1_chr12_+_25516433_25516564	0.892601	GLI1..3.p2	NM_001083341|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	NM_026037|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK076045|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK012931|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK031682|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK031824|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK033106|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK034873|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	BC025020|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK215458|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AB297383|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AB305046|Mboat2|67216|membrane bound O-acyltransferase domain containing 2
mm9_v1_chr9_+_106091656_106091698	0.892521	GLI1..3.p2	BC054453|Wdr82|77305|WD repeat domain containing 82	BC112907|Wdr82|77305|WD repeat domain containing 82	BC044669|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr2_-_110203298_110203336	0.891798	GLI1..3.p2	AK011548|Fibin|67606|fin bud initiation factor homolog (zebrafish)	AK012026|Fibin|67606|fin bud initiation factor homolog (zebrafish)
mm9_v1_chr11_+_66915650_66915669	0.890028	GLI1..3.p2	
mm9_v1_chr1_+_75143987_75144074	0.890028	GLI1..3.p2	AK218799|Fam134a|227298|family with sequence similarity 134, member A
mm9_v1_chr18_+_36124483_36124488	0.886435	GLI1..3.p2	BC066026|Psd2|74002|pleckstrin and Sec7 domain containing 2	NM_028707|Psd2|74002|pleckstrin and Sec7 domain containing 2
mm9_v1_chr1_-_94044969_94044969	0.886332	GLI1..3.p2	BC066052|Hdac4|208727|histone deacetylase 4	NM_207225|Hdac4|208727|histone deacetylase 4
mm9_v1_chr7_+_31350445_31350445	0.882797	GLI1..3.p2	AK154129|Tmem149|101883|transmembrane protein 149	NM_145580|Tmem149|101883|transmembrane protein 149
mm9_v1_chr5_-_122043586_122043597	0.880435	GLI1..3.p2	AK146286|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK150233|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK043506|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK160060|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK035145|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK078626|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK163452|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	U07235|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial
mm9_v1_chr2_+_91570249_91570297	0.878121	GLI1..3.p2	NM_001080754|Ambra1|228361|autophagy/beclin 1 regulator 1	NM_172669|Ambra1|228361|autophagy/beclin 1 regulator 1
mm9_v1_chr16_+_33062606_33062616	0.877889	GLI1..3.p2	AK030463|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	BC111899|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	BC112428|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	NM_172823|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)
mm9_v1_chr13_-_48608795_48608824	0.877502	GLI1..3.p2	AK162962|Zfp169|67911|zinc finger protein 169	AK086737|Zfp169|67911|zinc finger protein 169	NM_001164576|Zfp169|67911|zinc finger protein 169	NM_026450|Zfp169|67911|zinc finger protein 169
mm9_v1_chr1_-_75476031_75476045	0.876609	GLI1..3.p2	NM_001001565|Chpf|74241|chondroitin polymerizing factor	NM_001001566|Chpf|74241|chondroitin polymerizing factor
mm9_v1_chrX_+_148578716_148578819	0.875109	GLI1..3.p2	AB275281|Iqsec2|245666|IQ motif and Sec7 domain 2	NM_001114664|Iqsec2|245666|IQ motif and Sec7 domain 2	AY451401|Iqsec2|245666|IQ motif and Sec7 domain 2
mm9_v1_chr11_-_33743416_33743626	0.871262	GLI1..3.p2	AY647242|Kcnip1|70357|Kv channel-interacting protein 1	AY171234|Kcnip1|70357|Kv channel-interacting protein 1	BC034241|Kcnip1|70357|Kv channel-interacting protein 1	DQ148493|Kcnip1|70357|Kv channel-interacting protein 1	AK013657|Kcnip1|70357|Kv channel-interacting protein 1	AK014313|Kcnip1|70357|Kv channel-interacting protein 1	AK046398|Kcnip1|70357|Kv channel-interacting protein 1	AK045948|Kcnip1|70357|Kv channel-interacting protein 1	NM_001190885|Kcnip1|70357|Kv channel-interacting protein 1	NM_027398|Kcnip1|70357|Kv channel-interacting protein 1
mm9_v1_chr2_+_11093936_11094008	0.869025	GLI1..3.p2	AK037664|Prkcq|18761|protein kinase C, theta	D11091|Prkcq|18761|protein kinase C, theta	NM_008859|Prkcq|18761|protein kinase C, theta
mm9_v1_chr4_-_88238283_88238288	0.868813	GLI1..3.p2	BC117775|Ifna9|15972|interferon alpha 9	BC117774|Ifna6|15969|interferon alpha 6	NM_010507|Ifna9|15972|interferon alpha 9
mm9_v1_chr7_+_69521858_69521905	0.868565	GLI1..3.p2	NM_013779|Magel2|27385|melanoma antigen, family L, 2	BC062913|Magel2|27385|melanoma antigen, family L, 2	AK086725|Magel2|27385|melanoma antigen, family L, 2	AK082944|Magel2|27385|melanoma antigen, family L, 2
mm9_v1_chr5_+_150921233_150921280	0.866505	GLI1..3.p2	AK157981|Fry|320365|furry homolog (Drosophila)
mm9_v1_chr8_+_98201984_98202229	0.865115	GLI1..3.p2	
mm9_v1_chr17_-_26078825_26078928	0.864648	GLI1..3.p2	AK155173|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK016852|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK137390|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK033349|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK170431|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AB008895|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	BC014287|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	NM_011822|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK163680|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK169284|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q
mm9_v1_chr19_-_6141100_6141219	0.863928	GLI1..3.p2	AF143680|Arl2|56327|ADP-ribosylation factor-like 2	BC052938|Arl2|56327|ADP-ribosylation factor-like 2	BC060259|Arl2|56327|ADP-ribosylation factor-like 2	AK011366|Arl2|56327|ADP-ribosylation factor-like 2	NM_019722|Arl2|56327|ADP-ribosylation factor-like 2	BC080803|Arl2|56327|ADP-ribosylation factor-like 2
mm9_v1_chr9_-_106368268_106368278	0.862651	GLI1..3.p2	NM_001159652|Gpr62|436090|G protein-coupled receptor 62
mm9_v1_chr11_-_120314753_120314796	0.862526	GLI1..3.p2	BC082288|Pde6g|18588|phosphodiesterase 6G, cGMP-specific, rod, gamma	BC014723|Pde6g|18588|phosphodiesterase 6G, cGMP-specific, rod, gamma	AK080735|Pde6g|18588|phosphodiesterase 6G, cGMP-specific, rod, gamma	NM_012065|Pde6g|18588|phosphodiesterase 6G, cGMP-specific, rod, gamma
mm9_v1_chr3_+_157197301_157197382	0.860321	GLI1..3.p2	AK150291|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK152536|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK168613|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK167862|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK167983|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK167766|Zranb2|53861|zinc finger, RAN-binding domain containing 2	BC049115|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK168162|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK169335|Zranb2|53861|zinc finger, RAN-binding domain containing 2	NM_017381|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK146275|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK160862|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK167756|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK168033|Zranb2|53861|zinc finger, RAN-binding domain containing 2	BC132547|Zranb2|53861|zinc finger, RAN-binding domain containing 2	BC138575|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK166534|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK169114|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK146854|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AF133818|Zranb2|53861|zinc finger, RAN-binding domain containing 2
mm9_v1_chr3_-_62310907_62310910	0.858052	GLI1..3.p2	AF448804|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36	BC006615|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36	NM_028136|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36
mm9_v1_chr9_+_85735986_85736016	0.856354	GLI1..3.p2	AK165597|Tpbg|21983|trophoblast glycoprotein	NM_011627|Tpbg|21983|trophoblast glycoprotein	AK051162|Tpbg|21983|trophoblast glycoprotein
mm9_v1_chr12_+_104626888_104626975	0.855374	GLI1..3.p2	NM_026580|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK076336|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	NM_001177841|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	BC049551|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK016449|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK160505|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK019830|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006346|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006469|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006054|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	BC052409|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2
mm9_v1_chr2_-_118305356_118305444	0.852461	GLI1..3.p2	M29264|Srp14|20813|signal recognition particle 14	AK156845|Srp14|20813|signal recognition particle 14	AK167821|Srp14|20813|signal recognition particle 14	BC021537|Srp14|20813|signal recognition particle 14	AK168144|Srp14|20813|signal recognition particle 14	AK019310|Srp14|20813|signal recognition particle 14	NM_009273|Srp14|20813|signal recognition particle 14
mm9_v1_chr12_+_89598984_89599091	0.851536	GLI1..3.p2	AK011310|Adck1|72113|aarF domain containing kinase 1	AK154839|Adck1|72113|aarF domain containing kinase 1
mm9_v1_chr4_-_124527811_124527973	0.849418	GLI1..3.p2	NM_001142727|1110065P20Rik|68920|RIKEN cDNA 1110065P20 gene
mm9_v1_chr15_+_81065928_81066000	0.849349	GLI1..3.p2	NM_145132|Mchr1|207911|melanin-concentrating hormone receptor 1
mm9_v1_chr3_-_62310885_62310902	0.849072	GLI1..3.p2	BC064890|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36	BC138061|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36	AK129373|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36
mm9_v1_chr7_-_20283542_20283606	0.848238	GLI1..3.p2	CT010212|Apoe|11816|apolipoprotein E	CT010356|Apoe|11816|apolipoprotein E	M12414|Apoe|11816|apolipoprotein E
mm9_v1_chr17_-_14831058_14831092	0.844963	GLI1..3.p2	BC053702|Thbs2|21826|thrombospondin 2
mm9_v1_chr2_-_25430363_25430452	0.844888	GLI1..3.p2	BC028657|Phpt1|75454|phosphohistidine phosphatase 1	AK005756|Phpt1|75454|phosphohistidine phosphatase 1	NM_029293|Phpt1|75454|phosphohistidine phosphatase 1	AK154580|Phpt1|75454|phosphohistidine phosphatase 1
mm9_v1_chr9_-_107775031_107775194	0.844842	GLI1..3.p2	AK145612|Rbm6|19654|RNA binding motif protein 6	AK078712|Rbm6|19654|RNA binding motif protein 6	AK030451|Rbm6|19654|RNA binding motif protein 6	AK077899|Rbm6|19654|RNA binding motif protein 6	AK134164|Rbm6|19654|RNA binding motif protein 6	AK081846|Rbm6|19654|RNA binding motif protein 6	AK164432|Rbm6|19654|RNA binding motif protein 6	AK029954|Rbm6|19654|RNA binding motif protein 6	NM_011251|Rbm6|19654|RNA binding motif protein 6	NM_029169|Rbm6|19654|RNA binding motif protein 6	BC026129|Rbm6|19654|RNA binding motif protein 6
mm9_v1_chr10_+_106708886_106708980	0.842606	GLI1..3.p2	NM_001033223|Lin7a|108030|lin-7 homolog A (C. elegans)	NM_001039354|Lin7a|108030|lin-7 homolog A (C. elegans)	BC105965|Lin7a|108030|lin-7 homolog A (C. elegans)	AK160671|Lin7a|108030|lin-7 homolog A (C. elegans)	BC029721|Lin7a|108030|lin-7 homolog A (C. elegans)
mm9_v1_chr10_-_27336648_27336835	0.841698	GLI1..3.p2	U12147|Lama2|16773|laminin, alpha 2	AK046114|Lama2|16773|laminin, alpha 2	AK080131|Lama2|16773|laminin, alpha 2	AK030879|Lama2|16773|laminin, alpha 2	NM_008481|Lama2|16773|laminin, alpha 2	AK042011|Lama2|16773|laminin, alpha 2
mm9_v1_chr13_-_53472719_53472729	0.841227	GLI1..3.p2	AK084445|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	X95641|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	AK079578|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	BC046323|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	NM_009269|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1
mm9_v1_chr11_-_106163120_106163178	0.838172	GLI1..3.p2	AK019956|Gh|14599|growth hormone	AK019952|Gh|14599|growth hormone	AK019954|Gh|14599|growth hormone	AK019959|Gh|14599|growth hormone	AK019961|Gh|14599|growth hormone	AK030715|Gh|14599|growth hormone	BC061157|Gh|14599|growth hormone	NM_008117|Gh|14599|growth hormone	X02891|Gh|14599|growth hormone	AK030419|Gh|14599|growth hormone
mm9_v1_chr11_+_85166665_85166722	0.838079	GLI1..3.p2	NM_001166642|Bcas3|192197|breast carcinoma amplified sequence 3	NM_001166643|Bcas3|192197|breast carcinoma amplified sequence 3	NM_138681|Bcas3|192197|breast carcinoma amplified sequence 3	AK034117|Bcas3|192197|breast carcinoma amplified sequence 3	AF313800|Bcas3|192197|breast carcinoma amplified sequence 3	BC050233|Bcas3|192197|breast carcinoma amplified sequence 3	AK160127|Bcas3|192197|breast carcinoma amplified sequence 3	BC028339|Bcas3|192197|breast carcinoma amplified sequence 3	BC086693|Bcas3|192197|breast carcinoma amplified sequence 3	BC060690|Bcas3|192197|breast carcinoma amplified sequence 3	AK171964|Bcas3|192197|breast carcinoma amplified sequence 3	AK032423|Bcas3|192197|breast carcinoma amplified sequence 3	AK157222|Bcas3|192197|breast carcinoma amplified sequence 3	BC038173|Bcas3|192197|breast carcinoma amplified sequence 3
mm9_v1_chr13_-_54867800_54867840	0.837293	GLI1..3.p2	BC019409|Sncb|104069|synuclein, beta	NM_033610|Sncb|104069|synuclein, beta
mm9_v1_chr13_-_48608762_48608790	0.836879	GLI1..3.p2	BC060222|Zfp169|67911|zinc finger protein 169	NM_001164575|Zfp169|67911|zinc finger protein 169
mm9_v1_chr7_-_91754314_91754336	0.832009	GLI1..3.p2	AK158808|Fah|14085|fumarylacetoacetate hydrolase
mm9_v1_chr4_-_151692589_151692733	0.82624	GLI1..3.p2	BC023223|Rnf207|433809|ring finger protein 207	BC141256|Rnf207|433809|ring finger protein 207	BC141257|Rnf207|433809|ring finger protein 207	AK042379|Rnf207|433809|ring finger protein 207	BC022631|Rnf207|433809|ring finger protein 207	AK052224|Rnf207|433809|ring finger protein 207	NM_001033489|Rnf207|433809|ring finger protein 207
mm9_v1_chr4_+_124663673_124663851	0.825908	GLI1..3.p2	AB016768|Rspo1|192199|R-spondin homolog (Xenopus laevis)	NM_138683|Rspo1|192199|R-spondin homolog (Xenopus laevis)	AK132277|Rspo1|192199|R-spondin homolog (Xenopus laevis)
mm9_v1_chr17_+_80689536_80689571	0.825776	GLI1..3.p2	AY367765|Morn2|378462|MORN repeat containing 2	NM_194269|Morn2|378462|MORN repeat containing 2	BC037365|Morn2|378462|MORN repeat containing 2
mm9_v1_chr17_+_35373506_35373704	0.82533	GLI1..3.p2	NM_023179|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2	BC020190|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2	BC062380|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2	AK005109|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2	BC049587|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2	AK011945|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2
mm9_v1_chr15_-_74558450_74558463	0.824623	GLI1..3.p2	AK003904|Slurp1|57277|secreted Ly6/Plaur domain containing 1	BC111105|Slurp1|57277|secreted Ly6/Plaur domain containing 1	BC125244|Slurp1|57277|secreted Ly6/Plaur domain containing 1	NM_020519|Slurp1|57277|secreted Ly6/Plaur domain containing 1	AK029079|Slurp1|57277|secreted Ly6/Plaur domain containing 1
mm9_v1_chr8_+_116963601_116963632	0.824473	GLI1..3.p2	AK046903|Wwox|80707|WW domain-containing oxidoreductase	AK050541|Wwox|80707|WW domain-containing oxidoreductase	AK083096|Wwox|80707|WW domain-containing oxidoreductase	AK018507|Wwox|80707|WW domain-containing oxidoreductase
mm9_v1_chr9_-_110019806_110019945	0.821246	GLI1..3.p2	BC062885|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK153969|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK184646|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK159601|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK146326|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm9_v1_chr16_-_20730598_20730670	0.819657	GLI1..3.p2	L34169|Thpo|21832|thrombopoietin	NM_001173505|Thpo|21832|thrombopoietin
mm9_v1_chr6_-_8728481_8728486	0.819616	GLI1..3.p2	AK005965|Ica1|15893|islet cell autoantigen 1	NM_010492|Ica1|15893|islet cell autoantigen 1	AK016989|Ica1|15893|islet cell autoantigen 1
mm9_v1_chr2_-_22895682_22895796	0.817585	GLI1..3.p2	AF420251|Abi1|11308|abl-interactor 1	AK167744|Abi1|11308|abl-interactor 1	BC004657|Abi1|11308|abl-interactor 1	AK167568|Abi1|11308|abl-interactor 1	AK167328|Abi1|11308|abl-interactor 1	AK165924|Abi1|11308|abl-interactor 1	AK151363|Abi1|11308|abl-interactor 1	NM_001077190|Abi1|11308|abl-interactor 1	NM_001077192|Abi1|11308|abl-interactor 1	NM_001077193|Abi1|11308|abl-interactor 1	NM_007380|Abi1|11308|abl-interactor 1	NM_145994|Abi1|11308|abl-interactor 1
mm9_v1_chrX_+_7367116_7367152	0.814266	GLI1..3.p2	AK156165|Gripap1|54645|GRIP1 associated protein 1	AK172623|Gripap1|54645|GRIP1 associated protein 1	AK172699|Gripap1|54645|GRIP1 associated protein 1	AK172590|Gripap1|54645|GRIP1 associated protein 1	NM_207670|Gripap1|54645|GRIP1 associated protein 1	BC138523|Gripap1|54645|GRIP1 associated protein 1	BC145310|Gripap1|54645|GRIP1 associated protein 1	AK158098|Gripap1|54645|GRIP1 associated protein 1	X97571|Gripap1|54645|GRIP1 associated protein 1
mm9_v1_chr3_+_57539969_57539996	0.813809	GLI1..3.p2	NM_001113413|Rnf13|24017|ring finger protein 13	NM_011883|Rnf13|24017|ring finger protein 13	AK140682|Rnf13|24017|ring finger protein 13	AK008009|Rnf13|24017|ring finger protein 13	AK034135|Rnf13|24017|ring finger protein 13
mm9_v1_chr3_+_28162135_28162218	0.81328	GLI1..3.p2	BC050866|Tnik|665113|TRAF2 and NCK interacting kinase	BC050868|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163007|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163008|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163009|Tnik|665113|TRAF2 and NCK interacting kinase	NM_026910|Tnik|665113|TRAF2 and NCK interacting kinase	AK041777|Tnik|665113|TRAF2 and NCK interacting kinase	AK133568|Tnik|665113|TRAF2 and NCK interacting kinase	AK039113|Tnik|665113|TRAF2 and NCK interacting kinase
mm9_v1_chr15_-_74942109_74942378	0.812428	GLI1..3.p2	M18466|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2	D86232|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2	BC092082|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2	NM_001099217|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2
mm9_v1_chr7_+_107855215_107855319	0.808119	GLI1..3.p2	BC079886|Fam168a|319604|family with sequence similarity 168, member A	NM_178764|Fam168a|319604|family with sequence similarity 168, member A	AK043356|Fam168a|319604|family with sequence similarity 168, member A	AK047153|Fam168a|319604|family with sequence similarity 168, member A	AK048559|Fam168a|319604|family with sequence similarity 168, member A	AK051453|Fam168a|319604|family with sequence similarity 168, member A	AK084931|Fam168a|319604|family with sequence similarity 168, member A	AK137424|Fam168a|319604|family with sequence similarity 168, member A
mm9_v1_chr15_+_99125768_99125839	0.805537	GLI1..3.p2	AF135440|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	NM_018786|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)
mm9_v1_chr17_-_14831262_14831287	0.805417	GLI1..3.p2	NM_011581|Thbs2|21826|thrombospondin 2
mm9_v1_chr7_-_30736911_30736911	0.804399	GLI1..3.p2	BC050048|Zfp74|72723|zinc finger protein 74	NM_178384|Zfp74|72723|zinc finger protein 74
mm9_v1_chr10_-_31165613_31165628	0.803587	GLI1..3.p2	BC141068|Tpd52l1|21987|tumor protein D52-like 1	BC145321|Tpd52l1|21987|tumor protein D52-like 1	BC145322|Tpd52l1|21987|tumor protein D52-like 1	BC171924|Tpd52l1|21987|tumor protein D52-like 1	AK131855|Tpd52l1|21987|tumor protein D52-like 1
mm9_v1_chr2_+_120966144_120966210	0.801432	GLI1..3.p2	AK048809|Adal|75894|adenosine deaminase-like	AK016299|Adal|75894|adenosine deaminase-like	AK049697|Adal|75894|adenosine deaminase-like	AK039677|Adal|75894|adenosine deaminase-like	AK044025|Adal|75894|adenosine deaminase-like
mm9_v1_chr17_-_25933867_25933930	0.800467	GLI1..3.p2	BC008695|Metrn|70083|meteorin, glial cell differentiation regulator	BC037181|Metrn|70083|meteorin, glial cell differentiation regulator	DQ133462|Metrn|70083|meteorin, glial cell differentiation regulator	DQ133463|Metrn|70083|meteorin, glial cell differentiation regulator	DQ133464|Metrn|70083|meteorin, glial cell differentiation regulator	AK007688|Metrn|70083|meteorin, glial cell differentiation regulator
mm9_v1_chr18_+_38578583_38578694	0.799818	GLI1..3.p2	AF220209|Ndfip1|65113|Nedd4 family interacting protein 1	AK050560|Ndfip1|65113|Nedd4 family interacting protein 1	BC026372|Ndfip1|65113|Nedd4 family interacting protein 1	NM_022996|Ndfip1|65113|Nedd4 family interacting protein 1	BC020359|Ndfip1|65113|Nedd4 family interacting protein 1
mm9_v1_chr3_+_14480698_14480724	0.799148	GLI1..3.p2	AB055005|Slc7a12|140918|solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	AK085644|Slc7a12|140918|solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	NM_080852|Slc7a12|140918|solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	AJ417663|Slc7a12|140918|solute carrier family 7 (cationic amino acid transporter, y+ system), member 12
mm9_v1_chr2_+_49643205_49643207	0.798725	GLI1..3.p2	NM_027990|Lypd6b|71897|LY6/PLAUR domain containing 6B	AK009282|Lypd6b|71897|LY6/PLAUR domain containing 6B
mm9_v1_chr3_-_138738059_138738141	0.795447	GLI1..3.p2	AK164159|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	AK166315|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	AK154852|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	AK155793|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	AK160989|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	AK052125|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1
mm9_v1_chr9_+_37015872_37015947	0.793833	GLI1..3.p2	AK161115|Tmem218|66279|transmembrane protein 218	BC034160|Tmem218|66279|transmembrane protein 218	NM_025464|Tmem218|66279|transmembrane protein 218	AK003010|Tmem218|66279|transmembrane protein 218	AK007575|Tmem218|66279|transmembrane protein 218	AK008902|Tmem218|66279|transmembrane protein 218
mm9_v1_chr16_-_4964233_4964329	0.792972	GLI1..3.p2	BC050929|Anks3|72615|ankyrin repeat and sterile alpha motif domain containing 3	AK012494|Anks3|72615|ankyrin repeat and sterile alpha motif domain containing 3	BC051143|Anks3|72615|ankyrin repeat and sterile alpha motif domain containing 3	AK089037|Anks3|72615|ankyrin repeat and sterile alpha motif domain containing 3	NM_028301|Anks3|72615|ankyrin repeat and sterile alpha motif domain containing 3
mm9_v1_chr17_-_27760308_27760448	0.792207	GLI1..3.p2	AF264064|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	NM_019837|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	BC046805|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	BC016534|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3
mm9_v1_chr5_-_147032490_147032561	0.790802	GLI1..3.p2	AK017576|Rnf6|74132|ring finger protein (C3H2C3 type) 6	AK029912|Rnf6|74132|ring finger protein (C3H2C3 type) 6	AK150269|Rnf6|74132|ring finger protein (C3H2C3 type) 6	AK152106|Rnf6|74132|ring finger protein (C3H2C3 type) 6
mm9_v1_chr17_+_24035687_24035688	0.790367	GLI1..3.p2	BC171996|Dcpp2|630537|demilune cell and parotid protein 2	DQ237937|Dcpp2|630537|demilune cell and parotid protein 2	NM_001039238|Dcpp2|630537|demilune cell and parotid protein 2
mm9_v1_chr8_+_95484831_95484945	0.790184	GLI1..3.p2	AY525777|Slc6a2|20538|solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	AY525778|Slc6a2|20538|solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	NM_009209|Slc6a2|20538|solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2
mm9_v1_chr5_+_37259906_37259968	0.790113	GLI1..3.p2	AK032023|Ppp2r2c|269643|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform	AK049830|Ppp2r2c|269643|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform
mm9_v1_chr18_+_39152776_39152837	0.788589	GLI1..3.p2	AK011368|Arhgap26|71302|Rho GTPase activating protein 26	NM_175164|Arhgap26|71302|Rho GTPase activating protein 26
mm9_v1_chr4_+_42962733_42962813	0.788574	GLI1..3.p2	AK158535|Dnajb5|56323|DnaJ (Hsp40) homolog, subfamily B, member 5	AF321322|Dnajb5|56323|DnaJ (Hsp40) homolog, subfamily B, member 5
mm9_v1_chr15_+_91503654_91503682	0.787362	GLI1..3.p2	AK052591|Lrrk2|66725|leucine-rich repeat kinase 2	NM_025730|Lrrk2|66725|leucine-rich repeat kinase 2
mm9_v1_chr7_-_150646883_150646954	0.786053	GLI1..3.p2	U22399|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	BC005412|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	AK077844|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	AK132278|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	NM_001161624|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	NM_009876|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)
mm9_v1_chr5_-_103640272_103640352	0.785703	GLI1..3.p2	AK036275|Mapk10|26414|mitogen-activated protein kinase 10	BC046625|Mapk10|26414|mitogen-activated protein kinase 10	AK163206|Mapk10|26414|mitogen-activated protein kinase 10	AK076990|Mapk10|26414|mitogen-activated protein kinase 10	BC026697|Mapk10|26414|mitogen-activated protein kinase 10	AK082242|Mapk10|26414|mitogen-activated protein kinase 10	NM_001081567|Mapk10|26414|mitogen-activated protein kinase 10	NM_009158|Mapk10|26414|mitogen-activated protein kinase 10
mm9_v1_chr15_-_103170514_103170552	0.785532	GLI1..3.p2	AF118566|Zfp385a|29813|zinc finger protein 385A	NM_013866|Zfp385a|29813|zinc finger protein 385A	AK137748|Zfp385a|29813|zinc finger protein 385A
mm9_v1_chr12_+_87087488_87087539	0.785222	GLI1..3.p2	AY260574|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AY260575|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AY260576|Mfsd7c|217721|major facilitator superfamily domain containing 7C	BC011209|Mfsd7c|217721|major facilitator superfamily domain containing 7C	NM_145447|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AK145696|Mfsd7c|217721|major facilitator superfamily domain containing 7C
mm9_v1_chr17_-_32326407_32326493	0.782231	GLI1..3.p2	AK132483|Ephx3|71932|epoxide hydrolase 3	NM_001033163|Ephx3|71932|epoxide hydrolase 3	AK010021|Ephx3|71932|epoxide hydrolase 3	BC145797|Ephx3|71932|epoxide hydrolase 3
mm9_v1_chr11_-_69373707_69373738	0.781785	GLI1..3.p2	NM_007911|Efnb3|13643|ephrin B3
mm9_v1_chr3_+_37247574_37247574	0.779827	GLI1..3.p2	NM_008006|Fgf2|14173|fibroblast growth factor 2
mm9_v1_chr4_+_155205723_155205804	0.77528	GLI1..3.p2	AK003442|Aurkaip1|66077|aurora kinase A interacting protein 1	NM_025338|Aurkaip1|66077|aurora kinase A interacting protein 1	AK002737|Aurkaip1|66077|aurora kinase A interacting protein 1	AK158165|Aurkaip1|66077|aurora kinase A interacting protein 1	AK033452|Aurkaip1|66077|aurora kinase A interacting protein 1	AK166049|Aurkaip1|66077|aurora kinase A interacting protein 1	BC011245|Aurkaip1|66077|aurora kinase A interacting protein 1	AK144719|Aurkaip1|66077|aurora kinase A interacting protein 1
mm9_v1_chr5_+_117583596_117583674	0.774384	GLI1..3.p2	AK155208|Taok3|330177|TAO kinase 3	NM_001081308|Taok3|330177|TAO kinase 3	AK171353|Taok3|330177|TAO kinase 3	AK037817|Taok3|330177|TAO kinase 3	AK042181|Taok3|330177|TAO kinase 3
mm9_v1_chr7_+_31092787_31092817	0.774135	GLI1..3.p2	BC058124|Clip3|76686|CAP-GLY domain containing linker protein 3
mm9_v1_chr11_+_78312621_78312770	0.772947	GLI1..3.p2	NM_011707|Vtn|22370|vitronectin	AK011736|Vtn|22370|vitronectin	AK090325|Vtn|22370|vitronectin	AK167494|Vtn|22370|vitronectin
mm9_v1_chr12_-_85791928_85791966	0.772701	GLI1..3.p2	AK128924|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	AK169915|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	AK171896|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	AK155814|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	AK170305|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	AK082790|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	AK147146|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	AK171581|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1
mm9_v1_chr4_+_85699818_85699939	0.772384	GLI1..3.p2	NM_029967|Adamtsl1|77739|ADAMTS-like 1	AK020115|Adamtsl1|77739|ADAMTS-like 1	BC062814|Adamtsl1|77739|ADAMTS-like 1	AK045085|Adamtsl1|77739|ADAMTS-like 1	BC139339|Adamtsl1|77739|ADAMTS-like 1	BC139367|Adamtsl1|77739|ADAMTS-like 1
mm9_v1_chr1_-_123424939_123425041	0.770217	GLI1..3.p2	BC114988|Htr5b|15564|5-hydroxytryptamine (serotonin) receptor 5B	BC115825|Htr5b|15564|5-hydroxytryptamine (serotonin) receptor 5B	NM_010483|Htr5b|15564|5-hydroxytryptamine (serotonin) receptor 5B	X69867|Htr5b|15564|5-hydroxytryptamine (serotonin) receptor 5B
mm9_v1_chr12_+_45370113_45370142	0.767785	GLI1..3.p2	NM_026164|Pnpla8|67452|patatin-like phospholipase domain containing 8
mm9_v1_chr2_-_84518208_84518278	0.767522	GLI1..3.p2	AK170587|Tmx2|66958|thioredoxin-related transmembrane protein 2	AK145245|Tmx2|66958|thioredoxin-related transmembrane protein 2
mm9_v1_chr11_-_69373555_69373681	0.76714	GLI1..3.p2	BC052001|Efnb3|13643|ephrin B3	BC058617|Efnb3|13643|ephrin B3	AK048305|Efnb3|13643|ephrin B3
mm9_v1_chr7_+_56214442_56214485	0.766526	GLI1..3.p2	AK019901|Nav2|78286|neuron navigator 2	NM_001111016|Nav2|78286|neuron navigator 2	AK084063|Nav2|78286|neuron navigator 2	AK162444|Nav2|78286|neuron navigator 2
mm9_v1_chr2_+_163646545_163646658	0.765612	GLI1..3.p2	NM_016873|Wisp2|22403|WNT1 inducible signaling pathway protein 2	AF100778|Wisp2|22403|WNT1 inducible signaling pathway protein 2	AF126063|Wisp2|22403|WNT1 inducible signaling pathway protein 2	BC032877|Wisp2|22403|WNT1 inducible signaling pathway protein 2
mm9_v1_chr11_+_78059210_78059318	0.765509	GLI1..3.p2	BC058798|Sdf2|20316|stromal cell derived factor 2	NM_009143|Sdf2|20316|stromal cell derived factor 2
mm9_v1_chr6_+_90569209_90569239	0.764402	GLI1..3.p2	NM_001037493|Slc41a3|71699|solute carrier family 41, member 3	AK003140|Slc41a3|71699|solute carrier family 41, member 3
mm9_v1_chr4_-_153531656_153531685	0.763346	GLI1..3.p2	
mm9_v1_chr15_-_74828317_74828336	0.763224	GLI1..3.p2	BC002070|Ly6a|110454|lymphocyte antigen 6 complex, locus A	NM_010738|Ly6a|110454|lymphocyte antigen 6 complex, locus A	X04653|Ly6a|110454|lymphocyte antigen 6 complex, locus A	J03636|Ly6a|110454|lymphocyte antigen 6 complex, locus A	AK076200|Ly6a|110454|lymphocyte antigen 6 complex, locus A
mm9_v1_chr17_+_53618542_53618596	0.759928	GLI1..3.p2	AK081999|Rab5a|271457|RAB5A, member RAS oncogene family	NM_025887|Rab5a|271457|RAB5A, member RAS oncogene family	AK076093|Rab5a|271457|RAB5A, member RAS oncogene family	BC096481|Rab5a|271457|RAB5A, member RAS oncogene family
mm9_v1_chr11_-_106650166_106650257	0.758404	GLI1..3.p2	AK166698|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr19_+_6241665_6241742	0.758081	GLI1..3.p2	NM_194348|Atg2a|329015|ATG2 autophagy related 2 homolog A (S. cerevisiae)	BC063264|Atg2a|329015|ATG2 autophagy related 2 homolog A (S. cerevisiae)	AK129132|Atg2a|329015|ATG2 autophagy related 2 homolog A (S. cerevisiae)
mm9_v1_chr1_+_196446049_196446240	0.757209	GLI1..3.p2	D86949|Plxna2|18845|plexin A2	BC068155|Plxna2|18845|plexin A2
mm9_v1_chr16_-_21995441_21995614	0.756371	GLI1..3.p2	AY093499|Liph|239759|lipase, member H	AK048150|Liph|239759|lipase, member H	NM_153404|Liph|239759|lipase, member H	BC037489|Liph|239759|lipase, member H	AK161067|Liph|239759|lipase, member H	AK035498|Liph|239759|lipase, member H	AK134352|Liph|239759|lipase, member H	AK136503|Liph|239759|lipase, member H	AK162492|Liph|239759|lipase, member H	AK137278|Liph|239759|lipase, member H	NM_001083894|Liph|239759|lipase, member H
mm9_v1_chr2_-_5816381_5816442	0.755981	GLI1..3.p2	AK160602|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	AK077701|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	NM_021305|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)
mm9_v1_chr14_+_20570444_20570550	0.755314	GLI1..3.p2	NM_008695|Nid2|18074|nidogen 2	BC054746|Nid2|18074|nidogen 2	AK045306|Nid2|18074|nidogen 2	AK051664|Nid2|18074|nidogen 2	AK052839|Nid2|18074|nidogen 2	AK083629|Nid2|18074|nidogen 2	AK140832|Nid2|18074|nidogen 2	AK164258|Nid2|18074|nidogen 2	AY074820|Nid2|18074|nidogen 2	BC050224|Nid2|18074|nidogen 2	AB017202|Nid2|18074|nidogen 2	BC057016|Nid2|18074|nidogen 2
mm9_v1_chr2_+_144425704_144425774	0.751068	GLI1..3.p2	BC026537|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK003594|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK011917|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK010822|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK002246|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK017565|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)
mm9_v1_chr15_-_39775498_39775574	0.749872	GLI1..3.p2	BC058345|Lrp12|239393|low density lipoprotein-related protein 12
mm9_v1_chr11_+_78640059_78640096	0.748356	GLI1..3.p2	AK007467|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	AK144380|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	NM_001076681|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene
mm9_v1_chr3_+_141128527_141128634	0.747244	GLI1..3.p2	NM_009472|Unc5c|22253|unc-5 homolog C (C. elegans)	U72634|Unc5c|22253|unc-5 homolog C (C. elegans)	BC115772|Unc5c|22253|unc-5 homolog C (C. elegans)	AK031655|Unc5c|22253|unc-5 homolog C (C. elegans)	AK034558|Unc5c|22253|unc-5 homolog C (C. elegans)	AK035038|Unc5c|22253|unc-5 homolog C (C. elegans)	AK045251|Unc5c|22253|unc-5 homolog C (C. elegans)	AK141181|Unc5c|22253|unc-5 homolog C (C. elegans)	AK142411|Unc5c|22253|unc-5 homolog C (C. elegans)	AK164239|Unc5c|22253|unc-5 homolog C (C. elegans)	AK142974|Unc5c|22253|unc-5 homolog C (C. elegans)
mm9_v1_chr2_-_122194653_122194653	0.745087	GLI1..3.p2	NM_001013829|Shf|435684|Src homology 2 domain containing F
mm9_v1_chr11_+_53164518_53164596	0.744279	GLI1..3.p2	BC138999|Aff4|93736|AF4/FMR2 family, member 4	BC145490|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr3_+_57540006_57540055	0.74213	GLI1..3.p2	AK082296|Rnf13|24017|ring finger protein 13	AK158046|Rnf13|24017|ring finger protein 13	BC058182|Rnf13|24017|ring finger protein 13	AK139447|Rnf13|24017|ring finger protein 13	AK167278|Rnf13|24017|ring finger protein 13	AF037205|Rnf13|24017|ring finger protein 13	AF037206|Rnf13|24017|ring finger protein 13
mm9_v1_chr14_+_32955207_32955211	0.741147	GLI1..3.p2	NM_020597|Msmb|17695|beta-microseminoprotein
mm9_v1_chr6_-_85452851_85452987	0.737316	GLI1..3.p2	AK147681|Fbxo41|330369|F-box protein 41	AK147230|Fbxo41|330369|F-box protein 41	NM_001001160|Fbxo41|330369|F-box protein 41	BC070445|Fbxo41|330369|F-box protein 41
mm9_v1_chr1_-_74331210_74331311	0.737081	GLI1..3.p2	AK151820|Aamp|227290|angio-associated migratory protein	AK167621|Aamp|227290|angio-associated migratory protein	AK162750|Aamp|227290|angio-associated migratory protein	AK146470|Aamp|227290|angio-associated migratory protein	NM_001190444|Aamp|227290|angio-associated migratory protein	NM_146110|Aamp|227290|angio-associated migratory protein
mm9_v1_chr6_+_116288396_116288456	0.733549	GLI1..3.p2	AK005032|March8|71779|membrane-associated ring finger (C3HC4) 8	AK182250|March8|71779|membrane-associated ring finger (C3HC4) 8	AK189694|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr2_+_157854192_157854307	0.733122	GLI1..3.p2	AK011979|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	DQ372939|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	AK035806|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	AK147718|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	AK147930|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B
mm9_v1_chr18_-_10610315_10610349	0.732153	GLI1..3.p2	AK145333|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	NM_001081222|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm9_v1_chr18_+_35989376_35989483	0.731376	GLI1..3.p2	AK005364|Cxxc5|67393|CXXC finger 5	BC089314|Cxxc5|67393|CXXC finger 5	NM_133687|Cxxc5|67393|CXXC finger 5
mm9_v1_chr4_-_138419379_138419383	0.73122	GLI1..3.p2	AK090021|Pla2g5|18784|phospholipase A2, group V	NM_001122954|Pla2g5|18784|phospholipase A2, group V
mm9_v1_chr1_-_59293936_59294089	0.729294	GLI1..3.p2	AK029858|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_001159948|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	BC046828|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	BC031479|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	AB053307|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_028717|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_146109|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)
mm9_v1_chr14_+_31815002_31815071	0.72779	GLI1..3.p2	AK160461|Glt8d1|76485|glycosyltransferase 8 domain containing 1	BC069873|Glt8d1|76485|glycosyltransferase 8 domain containing 1
mm9_v1_chr3_-_107889507_107889627	0.72772	GLI1..3.p2	BC049119|Ampd2|109674|adenosine monophosphate deaminase 2	NM_028779|Ampd2|109674|adenosine monophosphate deaminase 2	AK169980|Ampd2|109674|adenosine monophosphate deaminase 2	AK004759|Ampd2|109674|adenosine monophosphate deaminase 2
mm9_v1_chr6_+_71493841_71493983	0.72745	GLI1..3.p2	AK083562|Vps24|66700|vacuolar protein sorting 24 (yeast)	NM_025783|Vps24|66700|vacuolar protein sorting 24 (yeast)	AK018611|Vps24|66700|vacuolar protein sorting 24 (yeast)	AK014818|Vps24|66700|vacuolar protein sorting 24 (yeast)	AK016677|Vps24|66700|vacuolar protein sorting 24 (yeast)	BC049964|Vps24|66700|vacuolar protein sorting 24 (yeast)	AK009414|Vps24|66700|vacuolar protein sorting 24 (yeast)	BC027441|Vps24|66700|vacuolar protein sorting 24 (yeast)	BC039759|Vps24|66700|vacuolar protein sorting 24 (yeast)
mm9_v1_chr10_+_79256298_79256486	0.723362	GLI1..3.p2	AK082163|Palm|18483|paralemmin	NM_001161747|Palm|18483|paralemmin	NM_023128|Palm|18483|paralemmin	AK162411|Palm|18483|paralemmin	BC015297|Palm|18483|paralemmin	Y14771|Palm|18483|paralemmin	AK133733|Palm|18483|paralemmin	AK037044|Palm|18483|paralemmin
mm9_v1_chr15_+_91503687_91503711	0.723206	GLI1..3.p2	AY792512|Lrrk2|66725|leucine-rich repeat kinase 2
mm9_v1_chr7_+_51697856_51697856	0.720457	GLI1..3.p2	BC060263|Lrrc4b|272381|leucine rich repeat containing 4B	NM_198250|Lrrc4b|272381|leucine rich repeat containing 4B
mm9_v1_chr7_-_111030754_111030754	0.718284	GLI1..3.p2	NM_013618|Olfr66|18367|olfactory receptor 66
mm9_v1_chr15_+_74346835_74346839	0.717673	GLI1..3.p2	AK147494|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr15_-_57907735_57907798	0.716375	GLI1..3.p2	BC004723|Zhx1|22770|zinc fingers and homeoboxes 1	AK053191|Zhx1|22770|zinc fingers and homeoboxes 1	Z54200|Zhx1|22770|zinc fingers and homeoboxes 1
mm9_v1_chr2_-_37298623_37298690	0.716164	GLI1..3.p2	BC109349|Zbtb26|320633|zinc finger and BTB domain containing 26	BC109350|Zbtb26|320633|zinc finger and BTB domain containing 26	AK044592|Zbtb26|320633|zinc finger and BTB domain containing 26	BC060655|Zbtb26|320633|zinc finger and BTB domain containing 26	NM_199025|Zbtb26|320633|zinc finger and BTB domain containing 26	AK166126|Zbtb26|320633|zinc finger and BTB domain containing 26
mm9_v1_chr10_-_128356215_128356352	0.716091	GLI1..3.p2	AF013288|Rdh5|19682|retinol dehydrogenase 5	BC021372|Rdh5|19682|retinol dehydrogenase 5	AF033196|Rdh5|19682|retinol dehydrogenase 5	AK033063|Rdh5|19682|retinol dehydrogenase 5	AK135139|Rdh5|19682|retinol dehydrogenase 5	NM_134006|Rdh5|19682|retinol dehydrogenase 5
mm9_v1_chr1_+_9591492_9591529	0.715817	GLI1..3.p2	AK043576|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene
mm9_v1_chr6_-_143048295_143048370	0.714227	GLI1..3.p2	AK172966|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	BC053913|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	AK141590|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene
mm9_v1_chr15_-_77949709_77949709	0.712752	GLI1..3.p2	AF077739|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2	NM_007583|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2
mm9_v1_chr4_+_45197777_45197777	0.710075	GLI1..3.p2	NM_001081172|Frmpd1|666060|FERM and PDZ domain containing 1
mm9_v1_chr11_-_6100014_6100127	0.708817	GLI1..3.p2	BC052089|Nudcd3|209586|NudC domain containing 3	AK215033|Nudcd3|209586|NudC domain containing 3
mm9_v1_chr11_+_60166826_60166909	0.708556	GLI1..3.p2	AK047468|Lrrc48|74665|leucine rich repeat containing 48	AK049695|Lrrc48|74665|leucine rich repeat containing 48	BC018412|Lrrc48|74665|leucine rich repeat containing 48	AK015430|Lrrc48|74665|leucine rich repeat containing 48	NM_029044|Lrrc48|74665|leucine rich repeat containing 48
mm9_v1_chr8_+_96335202_96335227	0.707917	GLI1..3.p2	M36778|Gnao1|14681|guanine nucleotide binding protein, alpha O	M36777|Gnao1|14681|guanine nucleotide binding protein, alpha O
mm9_v1_chr2_-_30214724_30214844	0.707014	GLI1..3.p2	AF426314|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	BC024477|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	NM_139302|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	AK155248|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	AK152409|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	AK152502|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	EF676083|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	AK167762|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	BC028859|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2
mm9_v1_chr15_-_39775173_39775370	0.706917	GLI1..3.p2	AK050512|Lrp12|239393|low density lipoprotein-related protein 12	NM_172814|Lrp12|239393|low density lipoprotein-related protein 12
mm9_v1_chr12_+_109648864_109648871	0.704882	GLI1..3.p2	BC059839|Eml1|68519|echinoderm microtubule associated protein like 1	NM_001043336|Eml1|68519|echinoderm microtubule associated protein like 1	BC125289|Eml1|68519|echinoderm microtubule associated protein like 1	BC144757|Eml1|68519|echinoderm microtubule associated protein like 1
mm9_v1_chr2_-_121097017_121097133	0.701921	GLI1..3.p2	AK045851|Trp53bp1|27223|transformation related protein 53 binding protein 1	BC079906|Trp53bp1|27223|transformation related protein 53 binding protein 1	AK045077|Trp53bp1|27223|transformation related protein 53 binding protein 1	AK148123|Trp53bp1|27223|transformation related protein 53 binding protein 1	BC037378|Trp53bp1|27223|transformation related protein 53 binding protein 1	NM_013735|Trp53bp1|27223|transformation related protein 53 binding protein 1
mm9_v1_chr8_-_108089811_108089973	0.701449	GLI1..3.p2	U21549|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AB088408|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	U13840|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	BC011075|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK171515|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK083372|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	NM_013477|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK133921|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1
mm9_v1_chr2_-_170232008_170232013	0.699844	GLI1..3.p2	AK008957|Bcas1|76960|breast carcinoma amplified sequence 1	AK031825|Bcas1|76960|breast carcinoma amplified sequence 1
mm9_v1_chr1_+_7079042_7079277	0.699608	GLI1..3.p2	AK079468|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK166166|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK168705|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	BC110360|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK134223|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK168606|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	BC019193|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK187882|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK040848|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK145008|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK166593|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm9_v1_chr11_+_34934995_34935016	0.699374	GLI1..3.p2	AF144629|Slit3|20564|slit homolog 3 (Drosophila)
mm9_v1_chr19_+_8665743_8665780	0.698211	GLI1..3.p2	NM_001164634|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	NM_031194|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	AK031962|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8
mm9_v1_chr11_+_53915017_53915025	0.695182	GLI1..3.p2	U16163|P4ha2|18452|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide
mm9_v1_chr14_+_21167427_21167478	0.695181	GLI1..3.p2	BC080849|Fam149b|105428|family with sequence similarity 149, member B	NM_001024512|Fam149b|105428|family with sequence similarity 149, member B	AK129252|Fam149b|105428|family with sequence similarity 149, member B
mm9_v1_chr15_+_99125666_99125690	0.694423	GLI1..3.p2	BC058389|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	BC082994|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	AK140075|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	AK164947|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)
mm9_v1_chr5_-_114830457_114830513	0.692139	GLI1..3.p2	AK147714|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK163351|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK161199|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK028657|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK041516|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK145295|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK166505|Kctd10|330171|potassium channel tetramerisation domain containing 10	BC006935|Kctd10|330171|potassium channel tetramerisation domain containing 10	NM_001159941|Kctd10|330171|potassium channel tetramerisation domain containing 10	NM_026145|Kctd10|330171|potassium channel tetramerisation domain containing 10
mm9_v1_chr11_-_5703752_5703798	0.689423	GLI1..3.p2	NM_018870|Pgam2|56012|phosphoglycerate mutase 2
mm9_v1_chr5_+_75552144_75552190	0.689186	GLI1..3.p2	AK163952|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	BC053036|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	NM_001083316|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide
mm9_v1_chr5_+_138187390_138187596	0.68918	GLI1..3.p2	AK143608|Tsc22d4|78829|TSC22 domain family, member 4	AK079510|Tsc22d4|78829|TSC22 domain family, member 4	AF201286|Tsc22d4|78829|TSC22 domain family, member 4	AK201891|Tsc22d4|78829|TSC22 domain family, member 4	AK154490|Tsc22d4|78829|TSC22 domain family, member 4
mm9_v1_chr3_-_37211319_37211367	0.683108	GLI1..3.p2	BC060991|Cetn4|207175|centrin 4	BC087905|Cetn4|207175|centrin 4	AK090064|Cetn4|207175|centrin 4	AK131808|Cetn4|207175|centrin 4	AK078275|Cetn4|207175|centrin 4	AF362367|Cetn4|207175|centrin 4	NM_145825|Cetn4|207175|centrin 4
mm9_v1_chr13_+_23776066_23776084	0.683011	GLI1..3.p2	AK011516|Hist1h2bc|68024|histone cluster 1, H2bc	NM_023422|Hist1h2bc|68024|histone cluster 1, H2bc	AK005191|Hist1h2bc|68024|histone cluster 1, H2bc	AK005407|Hist1h2bc|68024|histone cluster 1, H2bc	BC019673|Hist1h2bc|68024|histone cluster 1, H2bc	BC082774|Hist1h2bc|68024|histone cluster 1, H2bc
mm9_v1_chr11_-_6100141_6100160	0.681918	GLI1..3.p2	BC037090|Nudcd3|209586|NudC domain containing 3	AK050476|Nudcd3|209586|NudC domain containing 3	EU350933|Nudcd3|209586|NudC domain containing 3	AK036694|Nudcd3|209586|NudC domain containing 3
mm9_v1_chr7_-_134028184_134028216	0.679485	GLI1..3.p2	BC085152|Taok2|381921|TAO kinase 2	AK031190|Taok2|381921|TAO kinase 2
mm9_v1_chr1_+_120285920_120286055	0.677461	GLI1..3.p2	AK080782|Clasp1|76707|CLIP associating protein 1	BC157938|Clasp1|76707|CLIP associating protein 1	BC158064|Clasp1|76707|CLIP associating protein 1	AJ276962|Clasp1|76707|CLIP associating protein 1	AK031181|Clasp1|76707|CLIP associating protein 1
mm9_v1_chr11_-_118216591_118216621	0.676999	GLI1..3.p2	M82858|Timp2|21858|tissue inhibitor of metalloproteinase 2	X62622|Timp2|21858|tissue inhibitor of metalloproteinase 2	BC049126|Timp2|21858|tissue inhibitor of metalloproteinase 2
mm9_v1_chr2_-_163896796_163896916	0.676984	GLI1..3.p2	BC018278|Tomm34|67145|translocase of outer mitochondrial membrane 34	AK011786|Tomm34|67145|translocase of outer mitochondrial membrane 34	AK168329|Tomm34|67145|translocase of outer mitochondrial membrane 34	NM_025996|Tomm34|67145|translocase of outer mitochondrial membrane 34	AK017699|Tomm34|67145|translocase of outer mitochondrial membrane 34	AK075873|Tomm34|67145|translocase of outer mitochondrial membrane 34
mm9_v1_chr8_+_86939262_86939275	0.675204	GLI1..3.p2	AK147288|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	NM_007578|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147277|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147498|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147697|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm9_v1_chr1_-_83035005_83035022	0.672417	GLI1..3.p2	BC109154|Slc19a3|80721|solute carrier family 19 (sodium/hydrogen exchanger), member 3	BC109155|Slc19a3|80721|solute carrier family 19 (sodium/hydrogen exchanger), member 3	AK098112|Slc19a3|80721|solute carrier family 19 (sodium/hydrogen exchanger), member 3	AF271634|Slc19a3|80721|solute carrier family 19 (sodium/hydrogen exchanger), member 3	NM_030556|Slc19a3|80721|solute carrier family 19 (sodium/hydrogen exchanger), member 3
mm9_v1_chr4_-_56878011_56878101	0.670872	GLI1..3.p2	AK082755|Ctnnal1|54366|catenin (cadherin associated protein), alpha-like 1	AK034393|Ctnnal1|54366|catenin (cadherin associated protein), alpha-like 1	BC050070|Ctnnal1|54366|catenin (cadherin associated protein), alpha-like 1	AF006071|Ctnnal1|54366|catenin (cadherin associated protein), alpha-like 1	NM_018761|Ctnnal1|54366|catenin (cadherin associated protein), alpha-like 1
mm9_v1_chr6_+_86578269_86578294	0.670709	GLI1..3.p2	BC108357|Asprv1|67855|aspartic peptidase, retroviral-like 1
mm9_v1_chr2_-_174967487_174967557	0.669229	GLI1..3.p2	AK166773|Gm14399|100043761|predicted gene 14399
mm9_v1_chr18_+_68459987_68460081	0.669088	GLI1..3.p2	AK084393|Rnmt|67897|RNA (guanine-7-) methyltransferase	NM_001170953|Rnmt|67897|RNA (guanine-7-) methyltransferase	NM_026440|Rnmt|67897|RNA (guanine-7-) methyltransferase	AK011300|Rnmt|67897|RNA (guanine-7-) methyltransferase	AK082331|Rnmt|67897|RNA (guanine-7-) methyltransferase	AK031780|Rnmt|67897|RNA (guanine-7-) methyltransferase	AK015403|Rnmt|67897|RNA (guanine-7-) methyltransferase	BC021794|Rnmt|67897|RNA (guanine-7-) methyltransferase
mm9_v1_chr16_-_28929698_28929810	0.667487	GLI1..3.p2	BC085092|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	BC068245|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	NM_177718|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene
mm9_v1_chr8_-_107033781_107033809	0.667376	GLI1..3.p2	BC113771|Ccdc79|320022|coiled-coil domain containing 79	BC129814|Ccdc79|320022|coiled-coil domain containing 79	AK029754|Ccdc79|320022|coiled-coil domain containing 79	NM_180958|Ccdc79|320022|coiled-coil domain containing 79	AK030157|Ccdc79|320022|coiled-coil domain containing 79
mm9_v1_chr5_-_111239017_111239099	0.666985	GLI1..3.p2	BC059835|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK148317|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK156534|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	BC057121|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	NM_009469|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)
mm9_v1_chr9_-_110310638_110310737	0.665504	GLI1..3.p2	NM_001081043|Ptpn23|104831|protein tyrosine phosphatase, non-receptor type 23
mm9_v1_chr6_+_51382668_51382761	0.66081	GLI1..3.p2	AB013852|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3	NM_010903|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3	AK133935|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3	AK136980|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3	AK137881|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3	AK017278|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3	AK020550|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3	AK153612|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3	BC005416|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3
mm9_v1_chr12_+_19393641_19393718	0.660155	GLI1..3.p2	AK032716|Gm5784|544848|predicted gene 5784	AK149188|Gm5784|544848|predicted gene 5784
mm9_v1_chr9_-_121748578_121748578	0.657897	GLI1..3.p2	NM_028384|Ccdc13|434446|coiled-coil domain containing 13
mm9_v1_chr13_-_74487688_74487724	0.65272	GLI1..3.p2	AK153085|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
mm9_v1_chr1_+_129999868_129999934	0.652021	GLI1..3.p2	AK144098|R3hdm1|226412|R3H domain 1 (binds single-stranded nucleic acids)	NM_181750|R3hdm1|226412|R3H domain 1 (binds single-stranded nucleic acids)	AK141150|R3hdm1|226412|R3H domain 1 (binds single-stranded nucleic acids)	BC049181|R3hdm1|226412|R3H domain 1 (binds single-stranded nucleic acids)	AK051765|R3hdm1|226412|R3H domain 1 (binds single-stranded nucleic acids)
mm9_v1_chr9_-_114842953_114842992	0.649138	GLI1..3.p2	AK166662|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	BC037729|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	AK145475|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr17_-_79234656_79234721	0.648293	GLI1..3.p2	BC086652|Heatr5b|320473|HEAT repeat containing 5B	AK079542|Heatr5b|320473|HEAT repeat containing 5B	AK146166|Heatr5b|320473|HEAT repeat containing 5B	AK053037|Heatr5b|320473|HEAT repeat containing 5B	AK158478|Heatr5b|320473|HEAT repeat containing 5B	NM_001081179|Heatr5b|320473|HEAT repeat containing 5B
mm9_v1_chr9_+_30234913_30234913	0.646183	GLI1..3.p2	BC063262|Snx19|102607|sorting nexin 19	NM_028874|Snx19|102607|sorting nexin 19
mm9_v1_chr6_-_42274556_42274690	0.645806	GLI1..3.p2	AK163654|Fam131b|76156|family with sequence similarity 131, member B	AK047763|Fam131b|76156|family with sequence similarity 131, member B	AK018206|Fam131b|76156|family with sequence similarity 131, member B	AK018325|Fam131b|76156|family with sequence similarity 131, member B	AK158869|Fam131b|76156|family with sequence similarity 131, member B	NM_001113327|Fam131b|76156|family with sequence similarity 131, member B	NM_029528|Fam131b|76156|family with sequence similarity 131, member B
mm9_v1_chr5_-_52957343_52957374	0.645445	GLI1..3.p2	AY841361|Lgi2|246316|leucine-rich repeat LGI family, member 2
mm9_v1_chr11_-_5703677_5703735	0.644692	GLI1..3.p2	BC010750|Pgam2|56012|phosphoglycerate mutase 2	AK146703|Pgam2|56012|phosphoglycerate mutase 2	AK169019|Pgam2|56012|phosphoglycerate mutase 2	AF029843|Pgam2|56012|phosphoglycerate mutase 2
mm9_v1_chr4_-_118162385_118162453	0.640848	GLI1..3.p2	AK052413|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	AK051512|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	NM_011587|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
mm9_v1_chr5_-_31456576_31456630	0.639914	GLI1..3.p2	BC013452|Mpv17|17527|MpV17 mitochondrial inner membrane protein	AK040477|Mpv17|17527|MpV17 mitochondrial inner membrane protein	M36411|Mpv17|17527|MpV17 mitochondrial inner membrane protein	NM_008622|Mpv17|17527|MpV17 mitochondrial inner membrane protein
mm9_v1_chr19_+_3205598_3205608	0.639018	GLI1..3.p2	
mm9_v1_chr11_-_97605846_97606123	0.638577	GLI1..3.p2	AY050219|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK170392|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK037013|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK171497|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK089414|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	BC047282|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	NM_054051|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK146559|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
mm9_v1_chr16_+_96366980_96367038	0.637981	GLI1..3.p2	AK084688|Wrb|71446|tryptophan rich basic protein	AK172079|Wrb|71446|tryptophan rich basic protein	BC031769|Wrb|71446|tryptophan rich basic protein	NM_207301|Wrb|71446|tryptophan rich basic protein	AK021091|Wrb|71446|tryptophan rich basic protein
mm9_v1_chr8_-_124102548_124102765	0.636277	GLI1..3.p2	AB041586|Fbxo31|76454|F-box protein 31	AK163641|Fbxo31|76454|F-box protein 31	BC026929|Fbxo31|76454|F-box protein 31	AK140412|Fbxo31|76454|F-box protein 31	NM_133765|Fbxo31|76454|F-box protein 31
mm9_v1_chr7_+_28459677_28459679	0.63613	GLI1..3.p2	BC060708|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene	NM_198417|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene
mm9_v1_chr13_+_34129449_34129529	0.634316	GLI1..3.p2	AK078232|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	AK008202|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	AK152712|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	AK017801|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	AK170099|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	BC025162|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	NM_026512|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	AK002907|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	AK007606|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	BC023146|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
mm9_v1_chr16_+_18877336_18877523	0.632361	GLI1..3.p2	X92590|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	X75295|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	X99712|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm9_v1_chr8_-_11008429_11008457	0.630947	GLI1..3.p2	NM_001081212|Irs2|384783|insulin receptor substrate 2	BC147580|Irs2|384783|insulin receptor substrate 2
mm9_v1_chr4_-_118162354_118162375	0.628398	GLI1..3.p2	X71425|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	X73960|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	BC057004|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	BC060182|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	AK052192|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	AK161898|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	BC046452|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
mm9_v1_chr15_-_81846579_81846596	0.628296	GLI1..3.p2	BC022097|Pppde2|28075|PPPDE peptidase domain containing 2	AK146155|Pppde2|28075|PPPDE peptidase domain containing 2
mm9_v1_chr2_-_11699120_11699184	0.627871	GLI1..3.p2	AK083118|Fbxo18|50755|F-box protein 18	AK147829|Fbxo18|50755|F-box protein 18	BC031393|Fbxo18|50755|F-box protein 18	NM_015792|Fbxo18|50755|F-box protein 18	AK084645|Fbxo18|50755|F-box protein 18	AK154357|Fbxo18|50755|F-box protein 18	AK158937|Fbxo18|50755|F-box protein 18
mm9_v1_chr9_-_122775060_122775123	0.626616	GLI1..3.p2	BC099930|Zfp445|235682|zinc finger protein 445	NM_173364|Zfp445|235682|zinc finger protein 445
mm9_v1_chr3_+_113733457_113733508	0.626195	GLI1..3.p2	AK140136|Col11a1|12814|collagen, type XI, alpha 1	NM_007729|Col11a1|12814|collagen, type XI, alpha 1	BC052161|Col11a1|12814|collagen, type XI, alpha 1
mm9_v1_chr15_-_98493302_98493343	0.625072	GLI1..3.p2	AK014820|Ddx23|74351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	BC049928|Ddx23|74351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	NM_001080981|Ddx23|74351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	AK014272|Ddx23|74351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
mm9_v1_chr4_-_133556751_133556816	0.624705	GLI1..3.p2	AK149138|Dhdds|67422|dehydrodolichyl diphosphate synthase	BC004011|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK049991|Dhdds|67422|dehydrodolichyl diphosphate synthase	NM_026144|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK004993|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK014317|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK034277|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK135087|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK017556|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK171207|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK036929|Dhdds|67422|dehydrodolichyl diphosphate synthase
mm9_v1_chrX_+_96237919_96238003	0.623448	GLI1..3.p2	NM_199018|Stard8|236920|START domain containing 8	AK083435|Stard8|236920|START domain containing 8	AK133927|Stard8|236920|START domain containing 8	AK150259|Stard8|236920|START domain containing 8	AK149830|Stard8|236920|START domain containing 8	BC062944|Stard8|236920|START domain containing 8
mm9_v1_chr11_+_45869506_45869586	0.623358	GLI1..3.p2	D50410|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)	AK147217|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)	AF019887|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)	BC115767|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm9_v1_chr3_+_106904470_106904486	0.618957	GLI1..3.p2	AK044342|Kcna2|16490|potassium voltage-gated channel, shaker-related subfamily, member 2	NM_008417|Kcna2|16490|potassium voltage-gated channel, shaker-related subfamily, member 2
mm9_v1_chr7_-_137663020_137663074	0.617843	GLI1..3.p2	BC050948|Ate1|11907|arginyltransferase 1	NM_001136054|Ate1|11907|arginyltransferase 1	AK167591|Ate1|11907|arginyltransferase 1	BC042601|Ate1|11907|arginyltransferase 1	NM_013799|Ate1|11907|arginyltransferase 1	AK148442|Ate1|11907|arginyltransferase 1
mm9_v1_chr8_-_80248313_80248382	0.617477	GLI1..3.p2	BC008277|Ednra|13617|endothelin receptor type A	AK017486|Ednra|13617|endothelin receptor type A	NM_010332|Ednra|13617|endothelin receptor type A	AK042211|Ednra|13617|endothelin receptor type A
mm9_v1_chr1_+_51346086_51346100	0.61737	GLI1..3.p2	AK084096|Sdpr|20324|serum deprivation response
mm9_v1_chr11_+_3795221_3795283	0.61715	GLI1..3.p2	NM_173745|Dusp18|75219|dual specificity phosphatase 18	AK079664|Dusp18|75219|dual specificity phosphatase 18	BC020036|Dusp18|75219|dual specificity phosphatase 18	AK015917|Dusp18|75219|dual specificity phosphatase 18	AK081916|Dusp18|75219|dual specificity phosphatase 18
mm9_v1_chr7_-_6282035_6282035	0.613333	GLI1..3.p2	AK133380|Zfp583|213011|zinc finger protein 583	NM_001033249|Zfp583|213011|zinc finger protein 583
mm9_v1_chr11_+_109287259_109287319	0.612585	GLI1..3.p2	NM_025275|Amz2|13929|archaelysin family metallopeptidase 2	AK077195|Amz2|13929|archaelysin family metallopeptidase 2	AK143908|Amz2|13929|archaelysin family metallopeptidase 2	AK004062|Amz2|13929|archaelysin family metallopeptidase 2	AK075748|Amz2|13929|archaelysin family metallopeptidase 2
mm9_v1_chr4_-_153534748_153534817	0.612001	GLI1..3.p2	BC019544|Tprgl|67808|transformation related protein 63 regulated like	AK004777|Tprgl|67808|transformation related protein 63 regulated like	AK155413|Tprgl|67808|transformation related protein 63 regulated like	NM_026388|Tprgl|67808|transformation related protein 63 regulated like
mm9_v1_chr13_-_77274698_77274775	0.610857	GLI1..3.p2	AK047775|Ankrd32|105377|ankyrin repeat domain 32	BC100362|Ankrd32|105377|ankyrin repeat domain 32	BC061188|Ankrd32|105377|ankyrin repeat domain 32	AK012253|Ankrd32|105377|ankyrin repeat domain 32	AK089501|Ankrd32|105377|ankyrin repeat domain 32	AK171473|Ankrd32|105377|ankyrin repeat domain 32	NM_134071|Ankrd32|105377|ankyrin repeat domain 32
mm9_v1_chr2_+_173563060_173563229	0.610448	GLI1..3.p2	BC048231|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	NM_019806|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	BC057123|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK050632|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK081908|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AF115504|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK160925|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK172080|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chr4_+_48598013_48598089	0.609113	GLI1..3.p2	BC057598|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1	NM_021436|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1
mm9_v1_chr10_+_126727846_126727865	0.60813	GLI1..3.p2	NM_007837|Ddit3|13198|DNA-damage inducible transcript 3	AK028120|Ddit3|13198|DNA-damage inducible transcript 3	AK040004|Ddit3|13198|DNA-damage inducible transcript 3	BC013718|Ddit3|13198|DNA-damage inducible transcript 3
mm9_v1_chr14_+_52604434_52604640	0.604705	GLI1..3.p2	AK163945|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	NM_001145921|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	NM_001145922|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	NM_198249|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK134295|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK143527|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK131136|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK147761|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK053592|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	BC059018|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK202688|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK155659|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40
mm9_v1_chr9_-_45714921_45714956	0.604113	GLI1..3.p2	AK028768|Rnf214|235315|ring finger protein 214	AK046190|Rnf214|235315|ring finger protein 214	BC049909|Rnf214|235315|ring finger protein 214
mm9_v1_chr14_+_32955237_32955242	0.603515	GLI1..3.p2	U89840|Msmb|17695|beta-microseminoprotein
mm9_v1_chr2_+_151368197_151368330	0.602258	GLI1..3.p2	NM_008019|Fkbp1a|14225|FK506 binding protein 1a	AK019362|Fkbp1a|14225|FK506 binding protein 1a	AK010693|Fkbp1a|14225|FK506 binding protein 1a	AK145400|Fkbp1a|14225|FK506 binding protein 1a	AK169242|Fkbp1a|14225|FK506 binding protein 1a	AK141261|Fkbp1a|14225|FK506 binding protein 1a	AK168333|Fkbp1a|14225|FK506 binding protein 1a
mm9_v1_chr6_-_124761078_124761358	0.602058	GLI1..3.p2	AK216486|Tpi1|21991|triosephosphate isomerase 1	AK201708|Tpi1|21991|triosephosphate isomerase 1	AK191907|Tpi1|21991|triosephosphate isomerase 1	AK191323|Tpi1|21991|triosephosphate isomerase 1	AK190112|Tpi1|21991|triosephosphate isomerase 1	AK204501|Tpi1|21991|triosephosphate isomerase 1
mm9_v1_chr9_+_37175190_37175276	0.601298	GLI1..3.p2	AK013637|Hepacam|72927|hepatocyte cell adhesion molecule	NM_175189|Hepacam|72927|hepatocyte cell adhesion molecule	BC139057|Hepacam|72927|hepatocyte cell adhesion molecule	BC139058|Hepacam|72927|hepatocyte cell adhesion molecule	AK081154|Hepacam|72927|hepatocyte cell adhesion molecule	BC082537|Hepacam|72927|hepatocyte cell adhesion molecule
mm9_v1_chr17_-_32967155_32967192	0.597653	GLI1..3.p2	BC096552|Zfp799|240064|zinc finger protein 799	BC062813|Zfp799|240064|zinc finger protein 799	AK083640|Zfp799|240064|zinc finger protein 799	AK137037|Zfp799|240064|zinc finger protein 799	AK031686|Zfp799|240064|zinc finger protein 799	NM_177359|Zfp799|240064|zinc finger protein 799
mm9_v1_chr11_-_76384852_76384920	0.595571	GLI1..3.p2	AK142364|Abr|109934|active BCR-related gene	NM_198895|Abr|109934|active BCR-related gene
mm9_v1_chr11_+_29642253_29642464	0.595043	GLI1..3.p2	AK186869|Rtn4|68585|reticulon 4	AK186438|Rtn4|68585|reticulon 4	AK047253|Rtn4|68585|reticulon 4
mm9_v1_chr11_+_68912444_68912492	0.594639	GLI1..3.p2	NM_011065|Per1|18626|period homolog 1 (Drosophila)	BC091645|Per1|18626|period homolog 1 (Drosophila)
mm9_v1_chr2_-_177813129_177813180	0.592271	GLI1..3.p2	NM_001162922|Zfp931|353208|zinc finger protein 931	AK049261|Zfp931|353208|zinc finger protein 931	AK012776|Zfp931|353208|zinc finger protein 931	BC096373|Zfp931|353208|zinc finger protein 931
mm9_v1_chr11_+_79498993_79499001	0.590757	GLI1..3.p2	AK122559|Rab11fip4|268451|RAB11 family interacting protein 4 (class II)
mm9_v1_chr1_+_92811676_92811782	0.589965	GLI1..3.p2	NM_053015|Mlph|171531|melanophilin	AF384098|Mlph|171531|melanophilin	BC006900|Mlph|171531|melanophilin	AK008973|Mlph|171531|melanophilin	AK019883|Mlph|171531|melanophilin	AK148274|Mlph|171531|melanophilin	BC150804|Mlph|171531|melanophilin
mm9_v1_chr10_+_120471059_120471111	0.587562	GLI1..3.p2	AK077698|Wif1|24117|Wnt inhibitory factor 1	AK142443|Wif1|24117|Wnt inhibitory factor 1	AK158359|Wif1|24117|Wnt inhibitory factor 1	NM_011915|Wif1|24117|Wnt inhibitory factor 1
mm9_v1_chr2_+_130275977_130276080	0.586524	GLI1..3.p2	AK010458|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	NM_001163688|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	NM_008980|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	AK031690|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	AK165673|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	BC050930|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	BC110683|Ptpra|19262|protein tyrosine phosphatase, receptor type, A
mm9_v1_chr5_-_121062483_121062618	0.583452	GLI1..3.p2	BC021365|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene	AK003581|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene	NM_029096|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene	NM_133908|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene
mm9_v1_chr10_-_80204945_80204960	0.580171	GLI1..3.p2	BC037477|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit	BC048786|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit	BC022171|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit	AB004305|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit	NM_007460|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit
mm9_v1_chr7_-_54444724_54444785	0.57981	GLI1..3.p2	NM_205821|Mrgpra6|381886|MAS-related GPR, member A6	BC132198|Mrgpra6|381886|MAS-related GPR, member A6	BC132204|Mrgpra6|381886|MAS-related GPR, member A6
mm9_v1_chrX_-_99839480_99839617	0.57964	GLI1..3.p2	X74616|Phka1|18679|phosphorylase kinase alpha 1	AK137497|Phka1|18679|phosphorylase kinase alpha 1	AK036440|Phka1|18679|phosphorylase kinase alpha 1	AK030426|Phka1|18679|phosphorylase kinase alpha 1	NM_008832|Phka1|18679|phosphorylase kinase alpha 1	NM_173021|Phka1|18679|phosphorylase kinase alpha 1
mm9_v1_chr4_-_155559234_155559243	0.579335	GLI1..3.p2	BC150703|Agrn|11603|agrin	NM_021604|Agrn|11603|agrin
mm9_v1_chr11_+_112643501_112643595	0.578395	GLI1..3.p2	NM_011448|Sox9|20682|SRY-box containing gene 9	AK049986|Sox9|20682|SRY-box containing gene 9	AK030187|Sox9|20682|SRY-box containing gene 9	AK031516|Sox9|20682|SRY-box containing gene 9	BC023796|Sox9|20682|SRY-box containing gene 9	BC023808|Sox9|20682|SRY-box containing gene 9	BC024958|Sox9|20682|SRY-box containing gene 9	BC023953|Sox9|20682|SRY-box containing gene 9	AK220197|Sox9|20682|SRY-box containing gene 9	BC034264|Sox9|20682|SRY-box containing gene 9
mm9_v1_chr4_-_132848450_132848516	0.577034	GLI1..3.p2	
mm9_v1_chr4_+_151470827_151470883	0.575078	GLI1..3.p2	AY605057|Plekhg5|269608|pleckstrin homology domain containing, family G (with RhoGef domain) member 5	AY605058|Plekhg5|269608|pleckstrin homology domain containing, family G (with RhoGef domain) member 5	NM_001004156|Plekhg5|269608|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
mm9_v1_chr8_+_87162885_87162891	0.574296	GLI1..3.p2	AK132071|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm9_v1_chr14_-_19726121_19726326	0.572183	GLI1..3.p2	BC016265|Ube2e2|218793|ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast)	NM_144839|Ube2e2|218793|ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast)
mm9_v1_chr2_-_110203138_110203154	0.569064	GLI1..3.p2	BC027250|Fibin|67606|fin bud initiation factor homolog (zebrafish)	AK003790|Fibin|67606|fin bud initiation factor homolog (zebrafish)	NM_026271|Fibin|67606|fin bud initiation factor homolog (zebrafish)
mm9_v1_chr8_+_122190264_122190448	0.566249	GLI1..3.p2	AK009971|Wfdc1|67866|WAP four-disulfide core domain 1	AK132541|Wfdc1|67866|WAP four-disulfide core domain 1	NM_023395|Wfdc1|67866|WAP four-disulfide core domain 1	BC132073|Wfdc1|67866|WAP four-disulfide core domain 1	BC132469|Wfdc1|67866|WAP four-disulfide core domain 1	BC145305|Wfdc1|67866|WAP four-disulfide core domain 1	AK142707|Wfdc1|67866|WAP four-disulfide core domain 1	AK161606|Wfdc1|67866|WAP four-disulfide core domain 1	AK018575|Wfdc1|67866|WAP four-disulfide core domain 1	BC038122|Wfdc1|67866|WAP four-disulfide core domain 1	BC025850|Wfdc1|67866|WAP four-disulfide core domain 1
mm9_v1_chr18_-_66098706_66098742	0.564947	GLI1..3.p2	BC058757|Rax|19434|retina and anterior neural fold homeobox	AK053517|Rax|19434|retina and anterior neural fold homeobox	AK133951|Rax|19434|retina and anterior neural fold homeobox	AF001906|Rax|19434|retina and anterior neural fold homeobox	U73177|Rax|19434|retina and anterior neural fold homeobox	BC024731|Rax|19434|retina and anterior neural fold homeobox	NM_013833|Rax|19434|retina and anterior neural fold homeobox
mm9_v1_chr1_-_72921098_72921102	0.564778	GLI1..3.p2	L12447|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr9_+_72122785_72122816	0.562015	GLI1..3.p2	AK169721|Zfp280d|235469|zinc finger protein 280D	BC079878|Zfp280d|235469|zinc finger protein 280D	AK045173|Zfp280d|235469|zinc finger protein 280D	AK146597|Zfp280d|235469|zinc finger protein 280D
mm9_v1_chr5_-_147396814_147396814	0.561567	GLI1..3.p2	AK140298|Gpr12|14738|G-protein coupled receptor 12	NM_001010941|Gpr12|14738|G-protein coupled receptor 12
mm9_v1_chr3_-_19595395_19595395	0.560495	GLI1..3.p2	NM_205769|Crh|12918|corticotropin releasing hormone
mm9_v1_chr6_+_115881925_115881944	0.559488	GLI1..3.p2	AK044333|Rho|212541|rhodopsin	AK044412|Rho|212541|rhodopsin	BC094460|Rho|212541|rhodopsin	BC031766|Rho|212541|rhodopsin	BC013125|Rho|212541|rhodopsin	NM_145383|Rho|212541|rhodopsin
mm9_v1_chr5_+_136293975_136293975	0.558773	GLI1..3.p2	BC058385|Srrm3|58212|serine/arginine repetitive matrix 3	NM_021403|Srrm3|58212|serine/arginine repetitive matrix 3
mm9_v1_chr5_-_24606422_24606505	0.557216	GLI1..3.p2	AK154296|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	NM_145401|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm9_v1_chr9_-_102256709_102256791	0.557117	GLI1..3.p2	AK036148|Ephb1|270190|Eph receptor B1
mm9_v1_chr8_+_73429830_73429980	0.554535	GLI1..3.p2	BC150729|Mtap1s|270058|microtubule-associated protein 1S	NM_173013|Mtap1s|270058|microtubule-associated protein 1S	AK082854|Mtap1s|270058|microtubule-associated protein 1S	AK042159|Mtap1s|270058|microtubule-associated protein 1S	AK032300|Mtap1s|270058|microtubule-associated protein 1S	DQ387862|Mtap1s|270058|microtubule-associated protein 1S	BC058166|Mtap1s|270058|microtubule-associated protein 1S	BC079598|Mtap1s|270058|microtubule-associated protein 1S
mm9_v1_chr2_+_25719373_25719373	0.553037	GLI1..3.p2	FJ628361|Kcnt1|227632|potassium channel, subfamily T, member 1	NM_001145403|Kcnt1|227632|potassium channel, subfamily T, member 1
mm9_v1_chr15_-_74879242_74879259	0.552355	GLI1..3.p2	AK088782|Ly6c1|17067|lymphocyte antigen 6 complex, locus C1	AK143577|Ly6c1|17067|lymphocyte antigen 6 complex, locus C1	BC010764|Ly6c1|17067|lymphocyte antigen 6 complex, locus C1	NM_010741|Ly6c1|17067|lymphocyte antigen 6 complex, locus C1
mm9_v1_chr15_+_89259892_89260019	0.551854	GLI1..3.p2	AK083297|C730034F03Rik|319362|RIKEN cDNA C730034F03 gene	AK053866|C730034F03Rik|319362|RIKEN cDNA C730034F03 gene
mm9_v1_chr1_-_94998392_94998412	0.551163	GLI1..3.p2	AK138237|Kif1a|16560|kinesin family member 1A	BC034863|Kif1a|16560|kinesin family member 1A	D29951|Kif1a|16560|kinesin family member 1A	AK147640|Kif1a|16560|kinesin family member 1A
mm9_v1_chr10_+_128143313_128143342	0.550614	GLI1..3.p2	AK012808|Pmel|20431|premelanosome protein	AK131956|Pmel|20431|premelanosome protein	NM_021882|Pmel|20431|premelanosome protein	BC075667|Pmel|20431|premelanosome protein	BC082555|Pmel|20431|premelanosome protein	U14133|Pmel|20431|premelanosome protein
mm9_v1_chr2_-_14976498_14976510	0.550353	GLI1..3.p2	AK016629|Nsun6|74455|NOL1/NOP2/Sun domain family member 6	NM_001165941|Nsun6|74455|NOL1/NOP2/Sun domain family member 6	NM_001165943|Nsun6|74455|NOL1/NOP2/Sun domain family member 6	AK016811|Nsun6|74455|NOL1/NOP2/Sun domain family member 6
mm9_v1_chr13_+_32893953_32893987	0.549479	GLI1..3.p2	AK082078|Wrnip1|78903|Werner helicase interacting protein 1
mm9_v1_chr8_+_119467267_119467410	0.549281	GLI1..3.p2	AX775769|Atmin|234776|ATM interactor	NM_177700|Atmin|234776|ATM interactor	BC060631|Atmin|234776|ATM interactor	BC027752|Atmin|234776|ATM interactor	AK122281|Atmin|234776|ATM interactor
mm9_v1_chr4_+_132567420_132567463	0.547207	GLI1..3.p2	BC042621|Ahdc1|230793|AT hook, DNA binding motif, containing 1	NM_146155|Ahdc1|230793|AT hook, DNA binding motif, containing 1
mm9_v1_chr11_-_57332054_57332159	0.546965	GLI1..3.p2	BC019518|Fam114a2|67726|family with sequence similarity 114, member A2	AK018570|Fam114a2|67726|family with sequence similarity 114, member A2	AK076316|Fam114a2|67726|family with sequence similarity 114, member A2	AK149763|Fam114a2|67726|family with sequence similarity 114, member A2	AK007968|Fam114a2|67726|family with sequence similarity 114, member A2	NM_001168667|Fam114a2|67726|family with sequence similarity 114, member A2	NM_001168668|Fam114a2|67726|family with sequence similarity 114, member A2	NM_026342|Fam114a2|67726|family with sequence similarity 114, member A2
mm9_v1_chr2_-_177691943_177692036	0.5469	GLI1..3.p2	BC042711|Gm14326|665211|predicted gene 14326	BC079554|Gm14326|665211|predicted gene 14326	NM_001190302|Gm14326|665211|predicted gene 14326
mm9_v1_chr15_-_101524677_101524737	0.545148	GLI1..3.p2	BC122884|Krt6b|16688|keratin 6B	BC124556|Krt6b|16688|keratin 6B	BC119554|Krt6b|16688|keratin 6B	BC119555|Krt6b|16688|keratin 6B	BC139807|Krt6b|16688|keratin 6B	BC064470|Krt6a|16687|keratin 6A	K02108|Krt6a|16687|keratin 6A	BC080820|Krt6a|16687|keratin 6A	NM_008476|Krt6a|16687|keratin 6A	AK009394|Krt6a|16687|keratin 6A
mm9_v1_chr1_+_51345952_51345993	0.544526	GLI1..3.p2	AK035324|Sdpr|20324|serum deprivation response	BC027005|Sdpr|20324|serum deprivation response	NM_138741|Sdpr|20324|serum deprivation response	AK132324|Sdpr|20324|serum deprivation response
mm9_v1_chr4_-_102786828_102786903	0.542625	GLI1..3.p2	BC028975|Wdr78|242584|WD repeat domain 78	AK087151|E030030F06Rik|320382|RIKEN cDNA E030030F06 gene	NM_146254|Wdr78|242584|WD repeat domain 78
mm9_v1_chr7_-_35437859_35437910	0.542489	GLI1..3.p2	BC031749|Kctd15|233107|potassium channel tetramerisation domain containing 15	NM_146188|Kctd15|233107|potassium channel tetramerisation domain containing 15
mm9_v1_chr3_+_103772032_103772368	0.542129	GLI1..3.p2	AJ133721|Phtf1|18685|putative homeodomain transcription factor 1	NM_001163467|Phtf1|18685|putative homeodomain transcription factor 1	AJ242864|Phtf1|18685|putative homeodomain transcription factor 1	NM_001163468|Phtf1|18685|putative homeodomain transcription factor 1	NM_001163469|Phtf1|18685|putative homeodomain transcription factor 1	NM_013629|Phtf1|18685|putative homeodomain transcription factor 1	AK013292|Phtf1|18685|putative homeodomain transcription factor 1	AK019146|Phtf1|18685|putative homeodomain transcription factor 1	AK131629|Phtf1|18685|putative homeodomain transcription factor 1	AK088714|Phtf1|18685|putative homeodomain transcription factor 1	BC057340|Phtf1|18685|putative homeodomain transcription factor 1	BC060177|Phtf1|18685|putative homeodomain transcription factor 1	BC021147|Phtf1|18685|putative homeodomain transcription factor 1	BC050825|Phtf1|18685|putative homeodomain transcription factor 1
mm9_v1_chr3_-_87734023_87734090	0.541307	GLI1..3.p2	AK082223|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1	BC012224|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1	AK165264|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1	AK030684|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1	AK035389|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1	AK148128|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1
mm9_v1_chr3_+_106524842_106524867	0.537731	GLI1..3.p2	AK156488|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene	AK008209|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene	AK141379|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene	BC117763|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene	BC117764|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene	AK048030|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene	BC094643|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene
mm9_v1_chr6_+_86578225_86578230	0.536942	GLI1..3.p2	AK160494|Asprv1|67855|aspartic peptidase, retroviral-like 1
mm9_v1_chr7_+_135390325_135390446	0.536844	GLI1..3.p2	DQ143891|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	BC056362|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	NM_009365|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1
mm9_v1_chr1_-_88255804_88255941	0.535703	GLI1..3.p2	AK181817|Ncl|17975|nucleolin	AK215976|Ncl|17975|nucleolin	BC005460|Ncl|17975|nucleolin	BC012657|Ncl|17975|nucleolin	BC014285|Ncl|17975|nucleolin	AK168579|Ncl|17975|nucleolin	AK163275|Ncl|17975|nucleolin	AK011201|Ncl|17975|nucleolin	AK028681|Ncl|17975|nucleolin	AK029128|Ncl|17975|nucleolin	AK088402|Ncl|17975|nucleolin	AK144894|Ncl|17975|nucleolin	AK161597|Ncl|17975|nucleolin	AK165167|Ncl|17975|nucleolin	AK166681|Ncl|17975|nucleolin	AK168623|Ncl|17975|nucleolin	AF318184|Ncl|17975|nucleolin
mm9_v1_chr8_+_3515373_3515441	0.532153	GLI1..3.p2	AF173829|Pnpla6|50767|patatin-like phospholipase domain containing 6	NM_001122818|Pnpla6|50767|patatin-like phospholipase domain containing 6	NM_015801|Pnpla6|50767|patatin-like phospholipase domain containing 6	AK040720|Pnpla6|50767|patatin-like phospholipase domain containing 6	BC054789|Pnpla6|50767|patatin-like phospholipase domain containing 6	BC056999|Pnpla6|50767|patatin-like phospholipase domain containing 6
mm9_v1_chr3_+_87975676_87975677	0.529725	GLI1..3.p2	
mm9_v1_chr4_+_104830022_104830255	0.529554	GLI1..3.p2	AK160056|Ppap2b|67916|phosphatidic acid phosphatase type 2B	AK076183|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr1_+_75378688_75378710	0.529075	GLI1..3.p2	NM_001085371|Speg|11790|SPEG complex locus	AK164360|Speg|11790|SPEG complex locus
mm9_v1_chr10_+_120471255_120471291	0.528921	GLI1..3.p2	BC013268|Wif1|24117|Wnt inhibitory factor 1	AF122923|Wif1|24117|Wnt inhibitory factor 1
mm9_v1_chr1_+_34347244_34347312	0.52845	GLI1..3.p2	AK037206|Dst|13518|dystonin
mm9_v1_chr4_+_43575487_43575594	0.527051	GLI1..3.p2	AK132785|Creb3|12913|cAMP responsive element binding protein 3	AK144208|Creb3|12913|cAMP responsive element binding protein 3	NM_013497|Creb3|12913|cAMP responsive element binding protein 3	AK090077|Creb3|12913|cAMP responsive element binding protein 3	BC002094|Creb3|12913|cAMP responsive element binding protein 3
mm9_v1_chr2_+_156546758_156546851	0.52545	GLI1..3.p2	AK089484|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK150554|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK156212|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK211649|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AF073935|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chrX_+_63902456_63902492	0.522844	GLI1..3.p2	NM_001161431|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr14_-_118636251_118636251	0.5226	GLI1..3.p2	NM_177753|Sox21|223227|SRY-box containing gene 21
mm9_v1_chr8_+_73058795_73058894	0.52203	GLI1..3.p2	AK189244|Fkbp8|14232|FK506 binding protein 8	AK188492|Fkbp8|14232|FK506 binding protein 8	AK190969|Fkbp8|14232|FK506 binding protein 8	AK205574|Fkbp8|14232|FK506 binding protein 8	AK212129|Fkbp8|14232|FK506 binding protein 8	AK207414|Fkbp8|14232|FK506 binding protein 8	AK192821|Fkbp8|14232|FK506 binding protein 8	AK208969|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr11_-_58615400_58615517	0.521907	GLI1..3.p2	FJ468008|Fam183b|75429|family with sequence similarity 183, member B	BC094630|Fam183b|75429|family with sequence similarity 183, member B	BC061254|Fam183b|75429|family with sequence similarity 183, member B	BC048748|Fam183b|75429|family with sequence similarity 183, member B	AK157972|Fam183b|75429|family with sequence similarity 183, member B	AK013920|Fam183b|75429|family with sequence similarity 183, member B	NM_001162878|Fam183b|75429|family with sequence similarity 183, member B	NM_029283|Fam183b|75429|family with sequence similarity 183, member B	BC126964|Fam183b|75429|family with sequence similarity 183, member B	BC117741|Fam183b|75429|family with sequence similarity 183, member B
mm9_v1_chr5_-_71233855_71233855	0.520145	GLI1..3.p2	AK034332|Gabrg1|14405|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	NM_010252|Gabrg1|14405|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1
mm9_v1_chr4_-_147278757_147278826	0.519948	GLI1..3.p2	AY028170|Mfn2|170731|mitofusin 2	AK146801|Mfn2|170731|mitofusin 2	BC046503|Mfn2|170731|mitofusin 2	AK042080|Mfn2|170731|mitofusin 2	AK052689|Mfn2|170731|mitofusin 2	AK169373|Mfn2|170731|mitofusin 2	AK049583|Mfn2|170731|mitofusin 2	AF384100|Mfn2|170731|mitofusin 2	AK147863|Mfn2|170731|mitofusin 2
mm9_v1_chr19_-_37281762_37281782	0.518788	GLI1..3.p2	BC128377|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	AY313774|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	NM_198300|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3
mm9_v1_chr14_-_122138082_122138150	0.51804	GLI1..3.p2	BC158050|Dock9|105445|dedicator of cytokinesis 9	AK122431|Dock9|105445|dedicator of cytokinesis 9	NM_001128307|Dock9|105445|dedicator of cytokinesis 9	NM_001128308|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr18_+_42671147_42671160	0.516776	GLI1..3.p2	AK150312|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK013830|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK010571|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr10_+_75994327_75994402	0.513277	GLI1..3.p2	AK054393|Lss|16987|lanosterol synthase	AK141216|Lss|16987|lanosterol synthase	AK147680|Lss|16987|lanosterol synthase	AK154520|Lss|16987|lanosterol synthase	AK031271|Lss|16987|lanosterol synthase	AK044016|Lss|16987|lanosterol synthase	AK078023|Lss|16987|lanosterol synthase	BC029082|Lss|16987|lanosterol synthase	NM_146006|Lss|16987|lanosterol synthase
mm9_v1_chr19_+_5460588_5460693	0.513049	GLI1..3.p2	AK008093|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	AK028029|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	AK008132|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	AK012629|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	BC049284|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	AK019399|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	BC031716|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	AF270700|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	NM_021438|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein
mm9_v1_chr4_+_59639079_59639315	0.51259	GLI1..3.p2	AK047478|E130308A19Rik|230259|RIKEN cDNA E130308A19 gene	AK087509|E130308A19Rik|230259|RIKEN cDNA E130308A19 gene	NM_153158|E130308A19Rik|230259|RIKEN cDNA E130308A19 gene	AK047601|E130308A19Rik|230259|RIKEN cDNA E130308A19 gene	AK081604|E130308A19Rik|230259|RIKEN cDNA E130308A19 gene	NM_001015681|E130308A19Rik|230259|RIKEN cDNA E130308A19 gene	BC037070|E130308A19Rik|230259|RIKEN cDNA E130308A19 gene	BC017649|E130308A19Rik|230259|RIKEN cDNA E130308A19 gene
mm9_v1_chr7_+_80520360_80520429	0.511205	GLI1..3.p2	AK082560|Rgma|244058|RGM domain family, member A	BC059072|Rgma|244058|RGM domain family, member A	NM_177740|Rgma|244058|RGM domain family, member A
mm9_v1_chr9_-_20447047_20447249	0.510702	GLI1..3.p2	AF176525|Fbxl12|30843|F-box and leucine-rich repeat protein 12	BC054471|Fbxl12|30843|F-box and leucine-rich repeat protein 12	NM_013911|Fbxl12|30843|F-box and leucine-rich repeat protein 12
mm9_v1_chr2_-_5816330_5816380	0.510258	GLI1..3.p2	AF145254|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	AF222748|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	BC005458|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	AK017615|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	AK136447|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)
mm9_v1_chr6_+_83106466_83106494	0.509893	GLI1..3.p2	BC126949|1700003E16Rik|71837|RIKEN cDNA 1700003E16 gene
mm9_v1_chr16_-_31429861_31429871	0.509769	GLI1..3.p2	AK036265|LOC100047123|100047123|hypothetical protein LOC100047123
mm9_v1_chrX_-_71070284_71070317	0.50927	GLI1..3.p2	AK046101|Pdzd4|245469|PDZ domain containing 4	NM_001029868|Pdzd4|245469|PDZ domain containing 4
mm9_v1_chr4_+_119406425_119406450	0.507277	GLI1..3.p2	BC024097|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	BC049859|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3
mm9_v1_chr11_+_100182042_100182059	0.507205	GLI1..3.p2	Z50159|Eif1|20918|eukaryotic translation initiation factor 1
mm9_v1_chr19_-_42506122_42506286	0.507014	GLI1..3.p2	AJ421516|Crtac1|72832|cartilage acidic protein 1	AK032328|Crtac1|72832|cartilage acidic protein 1	AK049801|Crtac1|72832|cartilage acidic protein 1	AK149069|Crtac1|72832|cartilage acidic protein 1	NM_145123|Crtac1|72832|cartilage acidic protein 1	AK083221|Crtac1|72832|cartilage acidic protein 1	AK149020|Crtac1|72832|cartilage acidic protein 1
mm9_v1_chr7_-_150646758_150646786	0.506383	GLI1..3.p2	U20553|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)
mm9_v1_chr17_+_87362450_87362450	0.504225	GLI1..3.p2	BC056363|Rhoq|104215|ras homolog gene family, member Q	NM_145491|Rhoq|104215|ras homolog gene family, member Q
mm9_v1_chr1_-_94998418_94998474	0.502518	GLI1..3.p2	BC045161|Kif1a|16560|kinesin family member 1A	BC054538|Kif1a|16560|kinesin family member 1A	BC062891|Kif1a|16560|kinesin family member 1A	NM_001110315|Kif1a|16560|kinesin family member 1A	NM_008440|Kif1a|16560|kinesin family member 1A
mm9_v1_chr8_-_20020350_20020421	0.502063	GLI1..3.p2	BC025151|2610005L07Rik|381598|cadherin 11 pseudogene	AK009182|2610005L07Rik|381598|cadherin 11 pseudogene	AK160987|2610005L07Rik|381598|cadherin 11 pseudogene	AK131627|2610005L07Rik|381598|cadherin 11 pseudogene	AK035187|2610005L07Rik|381598|cadherin 11 pseudogene
mm9_v1_chr4_+_154230308_154230456	0.50094	GLI1..3.p2	NM_172878|Ttc34|242800|tetratricopeptide repeat domain 34	AK030055|Ttc34|242800|tetratricopeptide repeat domain 34	BC068299|Ttc34|242800|tetratricopeptide repeat domain 34
mm9_v1_chr8_+_46154490_46154563	0.500525	GLI1..3.p2	BC116900|Mtnr1a|17773|melatonin receptor 1A	BC119313|Mtnr1a|17773|melatonin receptor 1A	NM_008639|Mtnr1a|17773|melatonin receptor 1A	U52222|Mtnr1a|17773|melatonin receptor 1A
mm9_v1_chr2_-_163996824_163996848	0.499418	GLI1..3.p2	AF008573|Kcns1|16538|K+ voltage-gated channel, subfamily S, 1	NM_008435|Kcns1|16538|K+ voltage-gated channel, subfamily S, 1
mm9_v1_chr19_-_55173908_55173946	0.497381	GLI1..3.p2	BC019201|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial	NM_008149|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial
mm9_v1_chr1_-_173152548_173152594	0.49525	GLI1..3.p2	AK012264|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)
mm9_v1_chr16_-_84835812_84835914	0.492531	GLI1..3.p2	BC010766|Atp5j|11957|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	NM_016755|Atp5j|11957|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
mm9_v1_chr12_-_92828896_92828926	0.489849	GLI1..3.p2	BC117829|Gtf2a1|83602|general transcription factor II A, 1	BC117830|Gtf2a1|83602|general transcription factor II A, 1	AK048711|Gtf2a1|83602|general transcription factor II A, 1	NM_175335|Gtf2a1|83602|general transcription factor II A, 1
mm9_v1_chr4_-_151851624_151851635	0.48962	GLI1..3.p2	AK143166|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm9_v1_chr15_-_95909856_95909983	0.489319	GLI1..3.p2	AK135992|D030018L15Rik|402773|nuclear receptor coactivator 2 pseudogene	AK137238|D030018L15Rik|402773|nuclear receptor coactivator 2 pseudogene
mm9_v1_chr5_+_118695228_118695301	0.487349	GLI1..3.p2	NM_001081236|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	AK090380|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	BC104372|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	BC104373|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene
mm9_v1_chr7_+_25669603_25669732	0.486728	GLI1..3.p2	AK013524|Rps19|20085|ribosomal protein S19	AK031403|Rps19|20085|ribosomal protein S19	BC086938|Rps19|20085|ribosomal protein S19	AK012052|Rps19|20085|ribosomal protein S19	AK028244|Rps19|20085|ribosomal protein S19	BC034506|Rps19|20085|ribosomal protein S19	AK018725|Rps19|20085|ribosomal protein S19	NM_023133|Rps19|20085|ribosomal protein S19
mm9_v1_chr2_+_10075220_10075229	0.486398	GLI1..3.p2	BC043314|Itih5|209378|inter-alpha (globulin) inhibitor H5
mm9_v1_chr8_+_113443764_113443921	0.486167	GLI1..3.p2	NM_009179|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	AK031052|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	AK034863|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	AK053827|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	AK029246|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	BC066064|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2
mm9_v1_chr4_+_149022081_149022141	0.481491	GLI1..3.p2	AK007691|Clstn1|65945|calsyntenin 1
mm9_v1_chr12_-_88443285_88443488	0.480314	GLI1..3.p2	AJ245945|Ngb|64242|neuroglobin	AK165775|Ngb|64242|neuroglobin	AK140173|Ngb|64242|neuroglobin	BC024263|Ngb|64242|neuroglobin	NM_022414|Ngb|64242|neuroglobin
mm9_v1_chr18_+_36953553_36953593	0.479598	GLI1..3.p2	BC024881|Zmat2|66492|zinc finger, matrin type 2	NM_025594|Zmat2|66492|zinc finger, matrin type 2	AK012091|Zmat2|66492|zinc finger, matrin type 2	BC089501|Zmat2|66492|zinc finger, matrin type 2	AK008717|Zmat2|66492|zinc finger, matrin type 2
mm9_v1_chr9_+_72122705_72122721	0.474721	GLI1..3.p2	NM_146224|Zfp280d|235469|zinc finger protein 280D	AK169622|Zfp280d|235469|zinc finger protein 280D	AK172652|Zfp280d|235469|zinc finger protein 280D	AK083266|Zfp280d|235469|zinc finger protein 280D
mm9_v1_chr7_-_51746246_51746260	0.472568	GLI1..3.p2	AK206197|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK208212|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK215955|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK216646|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene
mm9_v1_chr1_-_64125352_64125397	0.470294	GLI1..3.p2	AK086122|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	AK036514|Klf7|93691|Kruppel-like factor 7 (ubiquitous)
mm9_v1_chr11_+_84339151_84339188	0.469305	GLI1..3.p2	AK018772|1500016L03Rik|78365|RIKEN cDNA 1500016L03 gene
mm9_v1_chr18_+_61085283_61085301	0.468186	GLI1..3.p2	AK083245|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK163179|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	NM_177407|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK122410|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	X14836|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr8_-_72240722_72240846	0.46818	GLI1..3.p2	BC079868|Zfp869|66869|zinc finger protein 869	AK088889|Zfp869|66869|zinc finger protein 869	AK134167|Zfp869|66869|zinc finger protein 869	AK004570|Zfp869|66869|zinc finger protein 869	AK030679|Zfp869|66869|zinc finger protein 869	AK136878|Zfp869|66869|zinc finger protein 869	NM_001039965|Zfp869|66869|zinc finger protein 869	NM_001039967|Zfp869|66869|zinc finger protein 869	AK083392|Zfp869|66869|zinc finger protein 869
mm9_v1_chr9_-_107775011_107775029	0.467043	GLI1..3.p2	AK220446|Rbm6|19654|RNA binding motif protein 6	AJ006486|Rbm6|19654|RNA binding motif protein 6	BC026130|Rbm6|19654|RNA binding motif protein 6
mm9_v1_chr7_-_73834420_73834446	0.466767	GLI1..3.p2	BC085155|Asb7|117589|ankyrin repeat and SOCS box-containing 7	NM_080443|Asb7|117589|ankyrin repeat and SOCS box-containing 7
mm9_v1_chr2_+_35516774_35517011	0.465382	GLI1..3.p2	AY305656|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr6_-_93628981_93629110	0.465188	GLI1..3.p2	AF027505|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	AK081387|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr17_-_7997838_7997838	0.463841	GLI1..3.p2	NM_001081416|Fndc1|68655|fibronectin type III domain containing 1
mm9_v1_chr5_-_117737592_117737628	0.463254	GLI1..3.p2	AK143897|Pebp1|23980|phosphatidylethanolamine binding protein 1
mm9_v1_chr17_-_36034018_36034097	0.4623	GLI1..3.p2	AK172070|2310061I04Rik|69662|RIKEN cDNA 2310061I04 gene	AK038622|2310061I04Rik|69662|RIKEN cDNA 2310061I04 gene	AK145087|2310061I04Rik|69662|RIKEN cDNA 2310061I04 gene
mm9_v1_chr2_+_166631011_166631132	0.459337	GLI1..3.p2	AK087574|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	NM_001085495|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK087920|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	BC158012|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK153722|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm9_v1_chr15_+_85036434_85036600	0.458113	GLI1..3.p2	AK083573|Fbln1|14114|fibulin 1	AK086451|Fbln1|14114|fibulin 1	NM_010180|Fbln1|14114|fibulin 1	X70854|Fbln1|14114|fibulin 1	AK035388|Fbln1|14114|fibulin 1	AK159646|Fbln1|14114|fibulin 1	AK085989|Fbln1|14114|fibulin 1	AK137511|Fbln1|14114|fibulin 1	EU543224|Fbln1|14114|fibulin 1	BC007140|Fbln1|14114|fibulin 1	AK183901|Fbln1|14114|fibulin 1	AK188770|Fbln1|14114|fibulin 1
mm9_v1_chr12_+_21117592_21117662	0.458062	GLI1..3.p2	AK147622|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	BC080847|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001004364|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001098168|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001135192|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm9_v1_chr8_-_13974679_13974776	0.457314	GLI1..3.p2	BC099613|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK166972|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK166875|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK077810|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC132465|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC132467|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC145286|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK163687|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	NM_173744|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene
mm9_v1_chr2_-_58177217_58177217	0.454828	GLI1..3.p2	AK049089|Acvr1c|269275|activin A receptor, type IC	NM_001033369|Acvr1c|269275|activin A receptor, type IC
mm9_v1_chr2_+_84518544_84518790	0.453096	GLI1..3.p2	NM_025885|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK010552|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK005399|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK168787|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK160579|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC082559|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC055404|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC044207|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC044302|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK209282|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)
mm9_v1_chr10_+_90545782_90545789	0.450555	GLI1..3.p2	NM_026166|Ikbip|67454|IKBKB interacting protein	NM_027078|Ikbip|67454|IKBKB interacting protein
mm9_v1_chr1_-_74647935_74647979	0.449446	GLI1..3.p2	BC022715|Rnf25|57751|ring finger protein 25	AK171752|Rnf25|57751|ring finger protein 25	AF171060|Rnf25|57751|ring finger protein 25	BC037100|Rnf25|57751|ring finger protein 25	BC048821|Rnf25|57751|ring finger protein 25	AK002399|Rnf25|57751|ring finger protein 25	NM_021313|Rnf25|57751|ring finger protein 25
mm9_v1_chr12_+_84861415_84861438	0.447752	GLI1..3.p2	NM_030246|Dcaf4|73828|DDB1 and CUL4 associated factor 4
mm9_v1_chr17_-_88464225_88464367	0.44689	GLI1..3.p2	BC110686|Fbxo11|225055|F-box protein 11
mm9_v1_chr11_-_60166321_60166401	0.446475	GLI1..3.p2	BC062947|Tom1l2|216810|target of myb1-like 2 (chicken)	BC127266|Tom1l2|216810|target of myb1-like 2 (chicken)	AK054531|Tom1l2|216810|target of myb1-like 2 (chicken)	AK036788|Tom1l2|216810|target of myb1-like 2 (chicken)	AF467887|Tom1l2|216810|target of myb1-like 2 (chicken)	AK043095|Tom1l2|216810|target of myb1-like 2 (chicken)
mm9_v1_chr7_+_119369347_119369415	0.445946	GLI1..3.p2	NM_001193305|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	NM_177282|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK030608|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK138935|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK163078|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK143191|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK161075|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK163231|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2
mm9_v1_chr5_-_138181225_138181225	0.445264	GLI1..3.p2	AB429289|6430598A04Rik|243300|RIKEN cDNA 6430598A04 gene	BC057372|6430598A04Rik|243300|RIKEN cDNA 6430598A04 gene	NM_175521|6430598A04Rik|243300|RIKEN cDNA 6430598A04 gene
mm9_v1_chr9_-_45762994_45763069	0.444746	GLI1..3.p2	BC051101|Sidt2|214597|SID1 transmembrane family, member 2
mm9_v1_chr8_-_48618741_48618847	0.444687	GLI1..3.p2	BC147504|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	BC151159|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	AK083445|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	AK085769|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	AK160812|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	NM_177240|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene
mm9_v1_chr4_-_127035364_127035407	0.441874	GLI1..3.p2	M91236|Gjb5|14622|gap junction protein, beta 5	AK082917|Gjb5|14622|gap junction protein, beta 5	NM_010291|Gjb5|14622|gap junction protein, beta 5
mm9_v1_chr19_+_45635070_45635130	0.441698	GLI1..3.p2	BC027559|Dpcd|226162|deleted in primary ciliary dyskinesia	AK077347|Dpcd|226162|deleted in primary ciliary dyskinesia	NM_172639|Dpcd|226162|deleted in primary ciliary dyskinesia
mm9_v1_chr8_-_19892900_19893049	0.441607	GLI1..3.p2	AK036306|2610005L07Rik|381598|cadherin 11 pseudogene	AK135487|6820431F20Rik|547150|cadherin 11 pseudogene	BC064022|2610005L07Rik|381598|cadherin 11 pseudogene	AK033345|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK170069|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK083828|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK012880|2610005L07Rik|381598|cadherin 11 pseudogene	AK167066|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK132389|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene
mm9_v1_chr3_+_103083215_103083215	0.441212	GLI1..3.p2	AY458590|Trim33|94093|tripartite motif-containing 33	NM_001079830|Trim33|94093|tripartite motif-containing 33	NM_053170|Trim33|94093|tripartite motif-containing 33
mm9_v1_chr9_+_21875410_21875475	0.439709	GLI1..3.p2	AK154427|LOC100503652|100503652|hypothetical LOC100503652
mm9_v1_chr2_+_25036524_25036678	0.436919	GLI1..3.p2	BC069891|Nrarp|67122|Notch-regulated ankyrin repeat protein	AK012426|Nrarp|67122|Notch-regulated ankyrin repeat protein
mm9_v1_chr3_-_87734096_87734116	0.436605	GLI1..3.p2	NM_153562|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1
mm9_v1_chr10_-_105011265_105011266	0.435912	GLI1..3.p2	BC138362|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	BC138363|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2
mm9_v1_chr6_+_121160693_121160835	0.433777	GLI1..3.p2	AJ245923|Tuba8|53857|tubulin, alpha 8	NM_017379|Tuba8|53857|tubulin, alpha 8	BC017631|Tuba8|53857|tubulin, alpha 8	AK032157|Tuba8|53857|tubulin, alpha 8	GU591980|Tuba8|53857|tubulin, alpha 8
mm9_v1_chr7_+_17460697_17460886	0.43368	GLI1..3.p2	AB073971|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm9_v1_chr14_-_79647102_79647173	0.432288	GLI1..3.p2	AK139686|Zfp957|105590|zinc finger protein 957	NM_001033215|Zfp957|105590|zinc finger protein 957
mm9_v1_chr8_-_97666364_97666472	0.430924	GLI1..3.p2	AK166482|Kifc3|16582|kinesin family member C3	BC070429|Kifc3|16582|kinesin family member C3	NM_001145831|Kifc3|16582|kinesin family member C3	NM_010631|Kifc3|16582|kinesin family member C3	D49546|Kifc3|16582|kinesin family member C3
mm9_v1_chr6_-_48522660_48522745	0.428561	GLI1..3.p2	AK002298|Rarres2|71660|retinoic acid receptor responder (tazarotene induced) 2	NM_027852|Rarres2|71660|retinoic acid receptor responder (tazarotene induced) 2	BC038914|Rarres2|71660|retinoic acid receptor responder (tazarotene induced) 2
mm9_v1_chr7_+_4610254_4610262	0.426194	GLI1..3.p2	
mm9_v1_chr2_+_156301543_156301577	0.425975	GLI1..3.p2	NM_001006664|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr5_+_30431701_30431755	0.424933	GLI1..3.p2	NM_001167879|Fam59b|242915|family with sequence similarity 59, member B
mm9_v1_chr2_-_177575003_177575048	0.423053	GLI1..3.p2	BC092392|Gm14325|329575|predicted gene 14325	BC108403|Gm2004|100039000|predicted gene 2004	BC092391|Gm14325|329575|predicted gene 14325
mm9_v1_chr2_+_22924846_22924986	0.422906	GLI1..3.p2	AK005001|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	BC061484|Acbd5|74159|acyl-Coenzyme A binding domain containing 5
mm9_v1_chr2_+_177757935_177758018	0.421595	GLI1..3.p2	AK005093|Etohi1|626848|ethanol induced 1	NM_001177399|Etohi1|626848|ethanol induced 1	NM_001177400|Etohi1|626848|ethanol induced 1
mm9_v1_chr7_-_4704436_4704695	0.421098	GLI1..3.p2	CT010366|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC048670|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	NM_183406|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	AK160152|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC125562|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC125564|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC145201|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC107296|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC107297|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	AY152400|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	NM_183405|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2
mm9_v1_chr9_-_36954858_36954932	0.42092	GLI1..3.p2	NM_148950|Pknox2|208076|Pbx/knotted 1 homeobox 2
mm9_v1_chr11_-_97914582_97914775	0.420913	GLI1..3.p2	AJ608761|Stac2|217154|SH3 and cysteine rich domain 2	BC029794|Stac2|217154|SH3 and cysteine rich domain 2	AK144433|Stac2|217154|SH3 and cysteine rich domain 2	AK079357|Stac2|217154|SH3 and cysteine rich domain 2	BC024864|Stac2|217154|SH3 and cysteine rich domain 2	AK078132|Stac2|217154|SH3 and cysteine rich domain 2	NM_146028|Stac2|217154|SH3 and cysteine rich domain 2
mm9_v1_chr2_+_121121189_121121220	0.42067	GLI1..3.p2	NM_001173506|Mtap1a|17754|microtubule-associated protein 1 A	AF182212|Mtap1a|17754|microtubule-associated protein 1 A	BC028853|Mtap1a|17754|microtubule-associated protein 1 A	AK160546|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr14_+_32842174_32842414	0.417456	GLI1..3.p2	AK019470|Galntl2|78754|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2	BC133711|Galntl2|78754|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2	NM_030166|Galntl2|78754|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2	AK163883|Galntl2|78754|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2
mm9_v1_chr10_-_25798022_25798082	0.417076	GLI1..3.p2	AK165025|Tmem200a|77220|transmembrane protein 200A	BC141266|Tmem200a|77220|transmembrane protein 200A	BC141267|Tmem200a|77220|transmembrane protein 200A
mm9_v1_chr2_+_155102040_155102281	0.41688	GLI1..3.p2	AK015020|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha	NM_025735|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha	AK003122|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha	AK003716|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha	BC010596|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha
mm9_v1_chr2_-_30329737_30329744	0.416458	GLI1..3.p2	AK034055|Ier5l|72500|immediate early response 5-like
mm9_v1_chr1_-_165242744_165242943	0.415716	GLI1..3.p2	AK031075|Prrx1|18933|paired related homeobox 1	AB221686|Prrx1|18933|paired related homeobox 1	X59725|Prrx1|18933|paired related homeobox 1	L06502|Prrx1|18933|paired related homeobox 1
mm9_v1_chr17_+_24686778_24686992	0.413676	GLI1..3.p2	BC099589|Pkd1|18763|polycystic kidney disease 1 homolog	NM_013630|Pkd1|18763|polycystic kidney disease 1 homolog	U70209|Pkd1|18763|polycystic kidney disease 1 homolog
mm9_v1_chr11_+_120222820_120222886	0.41317	GLI1..3.p2	AK078674|Fscn2|238021|fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)	AK050002|Fscn2|238021|fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)	NM_172802|Fscn2|238021|fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)	AK044556|Fscn2|238021|fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)	BC109356|Fscn2|238021|fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)	BC109357|Fscn2|238021|fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)
mm9_v1_chr17_-_28495638_28495706	0.412497	GLI1..3.p2	AK164621|Tulp1|22157|tubby like protein 1
mm9_v1_chr10_-_80522871_80522963	0.412061	GLI1..3.p2	AK039966|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	BC003836|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	NM_024499|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK051005|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK079168|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK165557|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm9_v1_chr8_-_107819839_107819997	0.410986	GLI1..3.p2	AK172618|Exoc3l|277978|exocyst complex component 3-like	BC094238|Exoc3l|277978|exocyst complex component 3-like	AK050100|Exoc3l|277978|exocyst complex component 3-like	NM_177788|Exoc3l|277978|exocyst complex component 3-like
mm9_v1_chr7_-_6107491_6107598	0.408567	GLI1..3.p2	BC137753|Zfp787|67109|zinc finger protein 787	AK018745|Zfp787|67109|zinc finger protein 787	AK008750|Zfp787|67109|zinc finger protein 787	AK077458|Zfp787|67109|zinc finger protein 787	BC038658|Zfp787|67109|zinc finger protein 787	NM_001013012|Zfp787|67109|zinc finger protein 787	AK006810|Zfp787|67109|zinc finger protein 787
mm9_v1_chr8_-_46444098_46444156	0.408129	GLI1..3.p2	AK038552|Fam149a|212326|family with sequence similarity 149, member A	AK034229|Fam149a|212326|family with sequence similarity 149, member A	AK220518|Fam149a|212326|family with sequence similarity 149, member A
mm9_v1_chr9_+_18235058_18235097	0.407441	GLI1..3.p2	NM_144934|Mbd3l2|234988|methyl-CpG binding domain protein 3-like 2	AK135772|Mbd3l2|234988|methyl-CpG binding domain protein 3-like 2	BC064744|Mbd3l2|234988|methyl-CpG binding domain protein 3-like 2
mm9_v1_chr9_-_86589782_86589994	0.405949	GLI1..3.p2	M26756|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	BC094028|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	BC080660|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	BC003287|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	AK004980|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	AK077968|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	J02652|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	BC011081|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	NM_008615|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic
mm9_v1_chr5_+_114830615_114830615	0.405651	GLI1..3.p2	NM_054093|Ube3b|117146|ubiquitin protein ligase E3B
mm9_v1_chr15_-_88971039_88971132	0.404656	GLI1..3.p2	BC021640|Mapk12|29857|mitogen-activated protein kinase 12	Y13439|Mapk12|29857|mitogen-activated protein kinase 12	AK011286|Mapk12|29857|mitogen-activated protein kinase 12	AK165741|Mapk12|29857|mitogen-activated protein kinase 12	NM_013871|Mapk12|29857|mitogen-activated protein kinase 12
mm9_v1_chr13_+_77274778_77274859	0.402702	GLI1..3.p2	NM_001081353|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	NM_001145676|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK165312|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK050886|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK008859|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	BC089469|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	BC151066|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	BC157949|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK143619|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene
mm9_v1_chr17_+_75404893_75404907	0.400896	GLI1..3.p2	AF022889|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chr1_-_108610520_108610597	0.397993	GLI1..3.p2	BC095964|Bcl2|12043|B-cell leukemia/lymphoma 2	AK042257|Bcl2|12043|B-cell leukemia/lymphoma 2
mm9_v1_chr11_+_98667577_98667599	0.397118	GLI1..3.p2	AK031902|Msl1|74026|male-specific lethal 1 homolog (Drosophila)
mm9_v1_chrX_+_98494487_98494551	0.395484	GLI1..3.p2	NM_172932|Nlgn3|245537|neuroligin 3	AK039018|Nlgn3|245537|neuroligin 3
mm9_v1_chr11_-_106576585_106576603	0.394522	GLI1..3.p2	NM_001032378|Pecam1|18613|platelet/endothelial cell adhesion molecule 1	NM_008816|Pecam1|18613|platelet/endothelial cell adhesion molecule 1
mm9_v1_chr9_-_114842996_114843065	0.393699	GLI1..3.p2	AK050572|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	AK172886|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr3_+_146515369_146515388	0.392927	GLI1..3.p2	AK014905|Ttll7|70892|tubulin tyrosine ligase-like family, member 7
mm9_v1_chr2_+_163484132_163484240	0.392801	GLI1..3.p2	AK164716|Pkig|18769|protein kinase inhibitor, gamma	AK168614|Pkig|18769|protein kinase inhibitor, gamma	NM_001164053|Pkig|18769|protein kinase inhibitor, gamma	AK184424|Pkig|18769|protein kinase inhibitor, gamma	AK186035|Pkig|18769|protein kinase inhibitor, gamma	AK186927|Pkig|18769|protein kinase inhibitor, gamma
mm9_v1_chr17_+_36117612_36117622	0.392393	GLI1..3.p2	X65026|Gnl1|14670|guanine nucleotide binding protein-like 1
mm9_v1_chr2_-_176194724_176194771	0.391308	GLI1..3.p2	BC099603|100043387|100043387|predicted gene, 100043387	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001099349|Gm14308|100043381|predicted gene 14308	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr11_+_75007475_75007498	0.391233	GLI1..3.p2	AK140456|Rtn4rl1|237847|reticulon 4 receptor-like 1	NM_177708|Rtn4rl1|237847|reticulon 4 receptor-like 1	AK033286|Rtn4rl1|237847|reticulon 4 receptor-like 1
mm9_v1_chr11_-_11937330_11937512	0.390489	GLI1..3.p2	AK030727|Grb10|14783|growth factor receptor bound protein 10	BC053842|Grb10|14783|growth factor receptor bound protein 10	AF022072|Grb10|14783|growth factor receptor bound protein 10	AK012646|Grb10|14783|growth factor receptor bound protein 10	AK163841|Grb10|14783|growth factor receptor bound protein 10	AK032927|Grb10|14783|growth factor receptor bound protein 10	NM_010345|Grb10|14783|growth factor receptor bound protein 10	FJ425892|Grb10|14783|growth factor receptor bound protein 10
mm9_v1_chr12_-_25780932_25780960	0.390037	GLI1..3.p2	BC006921|Id2|15902|inhibitor of DNA binding 2	BC053699|Id2|15902|inhibitor of DNA binding 2	M69293|Id2|15902|inhibitor of DNA binding 2	AK013239|Id2|15902|inhibitor of DNA binding 2	AK013378|Id2|15902|inhibitor of DNA binding 2	AK003222|Id2|15902|inhibitor of DNA binding 2	AK146346|Id2|15902|inhibitor of DNA binding 2	AK135547|Id2|15902|inhibitor of DNA binding 2	NM_010496|Id2|15902|inhibitor of DNA binding 2	AK146606|Id2|15902|inhibitor of DNA binding 2
mm9_v1_chr2_-_175800159_175800169	0.389112	GLI1..3.p2	BC032262|Gm14288|13999|predicted gene 14288	BC086907|Gm14288|13999|predicted gene 14288	NM_001033123|Gm14288|13999|predicted gene 14288
mm9_v1_chr11_+_113485570_113485570	0.388273	GLI1..3.p2	NM_001042606|Sstr2|20606|somatostatin receptor 2	NM_009217|Sstr2|20606|somatostatin receptor 2
mm9_v1_chr2_+_175100546_175100634	0.38766	GLI1..3.p2	BC099593|Gm14420|628308|predicted gene 14420	BC086907|Gm14288|13999|predicted gene 14288	NM_001033123|Gm14288|13999|predicted gene 14288	BC032262|Gm14288|13999|predicted gene 14288
mm9_v1_chr19_+_7457020_7457026	0.387642	GLI1..3.p2	AK018939|1700105P06Rik|654802|RIKEN cDNA 1700105P06 gene
mm9_v1_chr7_-_99785544_99785651	0.38739	GLI1..3.p2	AK048925|Ankrd42|73845|ankyrin repeat domain 42	AK029888|Ankrd42|73845|ankyrin repeat domain 42	AK133339|Ankrd42|73845|ankyrin repeat domain 42	AK033599|Ankrd42|73845|ankyrin repeat domain 42	BC100433|Ankrd42|73845|ankyrin repeat domain 42	AK029511|Ankrd42|73845|ankyrin repeat domain 42	NM_028665|Ankrd42|73845|ankyrin repeat domain 42
mm9_v1_chr9_-_26816373_26816466	0.38645	GLI1..3.p2	AK216030|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	AK007456|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)
mm9_v1_chr15_-_58046428_58046480	0.385459	GLI1..3.p2	AK014793|Fbxo32|67731|F-box protein 32	NM_026346|Fbxo32|67731|F-box protein 32	AF441120|Fbxo32|67731|F-box protein 32
mm9_v1_chr1_+_131169878_131169880	0.382975	GLI1..3.p2	AK052119|Thsd7b|210417|thrombospondin, type I, domain containing 7B	NM_172485|Thsd7b|210417|thrombospondin, type I, domain containing 7B
mm9_v1_chr18_+_42671163_42671217	0.38268	GLI1..3.p2	AK076993|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK168434|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AB023485|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC040284|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC039185|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC016542|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr10_+_90545834_90545844	0.379934	GLI1..3.p2	AK004670|Ikbip|67454|IKBKB interacting protein	BC055834|Ikbip|67454|IKBKB interacting protein
mm9_v1_chr13_+_73741384_73741748	0.378305	GLI1..3.p2	AK032295|Clptm1l|218335|CLPTM1-like	AK048357|Clptm1l|218335|CLPTM1-like	AK156203|Clptm1l|218335|CLPTM1-like	AK165939|Clptm1l|218335|CLPTM1-like	BC026562|Clptm1l|218335|CLPTM1-like	NM_146047|Clptm1l|218335|CLPTM1-like
mm9_v1_chr15_-_102355046_102355051	0.374488	GLI1..3.p2	BC107294|Npff|54615|neuropeptide FF-amide peptide precursor	AF148701|Npff|54615|neuropeptide FF-amide peptide precursor	BC107295|Npff|54615|neuropeptide FF-amide peptide precursor	NM_018787|Npff|54615|neuropeptide FF-amide peptide precursor
mm9_v1_chr5_-_117737462_117737569	0.372971	GLI1..3.p2	AK182328|Pebp1|23980|phosphatidylethanolamine binding protein 1	AF300422|Pebp1|23980|phosphatidylethanolamine binding protein 1	U43206|Pebp1|23980|phosphatidylethanolamine binding protein 1	BC089332|Pebp1|23980|phosphatidylethanolamine binding protein 1	AB046417|Pebp1|23980|phosphatidylethanolamine binding protein 1	AK168790|Pebp1|23980|phosphatidylethanolamine binding protein 1
mm9_v1_chr19_+_45438212_45438344	0.372663	GLI1..3.p2	NM_001037758|Btrc|12234|beta-transducin repeat containing protein	NM_009771|Btrc|12234|beta-transducin repeat containing protein	AK220183|Btrc|12234|beta-transducin repeat containing protein	AK145624|Btrc|12234|beta-transducin repeat containing protein	AK052317|Btrc|12234|beta-transducin repeat containing protein	AK083257|Btrc|12234|beta-transducin repeat containing protein	AF081887|Btrc|12234|beta-transducin repeat containing protein	AK032221|Btrc|12234|beta-transducin repeat containing protein	AK145091|Btrc|12234|beta-transducin repeat containing protein	BC052879|Btrc|12234|beta-transducin repeat containing protein	BC003989|Btrc|12234|beta-transducin repeat containing protein	AF099932|Btrc|12234|beta-transducin repeat containing protein	AF110396|Btrc|12234|beta-transducin repeat containing protein	AF112979|Btrc|12234|beta-transducin repeat containing protein	AK180045|Btrc|12234|beta-transducin repeat containing protein	AK188552|Btrc|12234|beta-transducin repeat containing protein	AK189588|Btrc|12234|beta-transducin repeat containing protein
mm9_v1_chr2_+_83484743_83484852	0.371719	GLI1..3.p2	BC058229|Zc3h15|69082|zinc finger CCCH-type containing 15	AK218793|Zc3h15|69082|zinc finger CCCH-type containing 15
mm9_v1_chr2_+_25036276_25036300	0.370324	GLI1..3.p2	AY046077|Nrarp|67122|Notch-regulated ankyrin repeat protein	NM_025980|Nrarp|67122|Notch-regulated ankyrin repeat protein	BC020293|Nrarp|67122|Notch-regulated ankyrin repeat protein	BC048088|Nrarp|67122|Notch-regulated ankyrin repeat protein
mm9_v1_chr2_+_25621067_25621088	0.370323	GLI1..3.p2	BC116816|Lcn3|16820|lipocalin 3	BC116818|Lcn3|16820|lipocalin 3	BC144882|Lcn3|16820|lipocalin 3	D38580|Lcn3|16820|lipocalin 3	NM_010694|Lcn3|16820|lipocalin 3
mm9_v1_chr3_+_106524599_106524599	0.368422	GLI1..3.p2	AK030201|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene	NM_001039488|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene	NM_028081|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene
mm9_v1_chr14_-_122097583_122097657	0.367202	GLI1..3.p2	BC157964|Dock9|105445|dedicator of cytokinesis 9	NM_001081039|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr12_+_52792192_52792204	0.365499	GLI1..3.p2	BC053339|Ap4s1|11782|adaptor-related protein complex AP-4, sigma 1	AK005283|Ap4s1|11782|adaptor-related protein complex AP-4, sigma 1
mm9_v1_chr5_-_22939564_22939736	0.365432	GLI1..3.p2	AK139013|5031425E22Rik|269630|RIKEN cDNA 5031425E22 gene
mm9_v1_chr15_-_36485294_36485327	0.364651	GLI1..3.p2	BC061007|Snx31|66696|sorting nexin 31	AK035226|Snx31|66696|sorting nexin 31	NM_025712|Snx31|66696|sorting nexin 31	AK014536|Snx31|66696|sorting nexin 31	AK034196|Snx31|66696|sorting nexin 31
mm9_v1_chr6_-_86347065_86347084	0.364296	GLI1..3.p2	AK173058|Pcyox1|66881|prenylcysteine oxidase 1
mm9_v1_chr2_-_176329852_176329940	0.363067	GLI1..3.p2	BC032262|Gm14288|13999|predicted gene 14288	BC086907|Gm14288|13999|predicted gene 14288	NM_001033123|Gm14288|13999|predicted gene 14288	BC099593|Gm14420|628308|predicted gene 14420
mm9_v1_chr8_+_91045333_91045405	0.361608	GLI1..3.p2	AF358134|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AF343352|Nkd1|93960|naked cuticle 1 homolog (Drosophila)
mm9_v1_chr2_-_131178551_131178627	0.360975	GLI1..3.p2	BC096529|Rnf24|51902|ring finger protein 24	AK154093|Rnf24|51902|ring finger protein 24	AK048813|Rnf24|51902|ring finger protein 24	AK015699|Rnf24|51902|ring finger protein 24	AK089207|Rnf24|51902|ring finger protein 24	AK083665|Rnf24|51902|ring finger protein 24	NM_178607|Rnf24|51902|ring finger protein 24
mm9_v1_chr1_+_74901489_74901677	0.360918	GLI1..3.p2	NM_009872|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100712|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC103550|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100714|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100715|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)
mm9_v1_chr16_-_93929811_93929811	0.360181	GLI1..3.p2	NM_001165925|Cldn14|56173|claudin 14
mm9_v1_chr2_+_175868350_175868436	0.359864	GLI1..3.p2	AK013921|Gm6710|626832|predicted gene 6710	AK013829|Gm14391|665001|predicted gene 14391	NM_001099308|Gm14391|665001|predicted gene 14391	NM_001177480|Gm14391|665001|predicted gene 14391	NM_001164689|Gm6710|626832|predicted gene 6710	AK169456|Gm14391|665001|predicted gene 14391	U62393|Gm6710|626832|predicted gene 6710
mm9_v1_chr7_-_148620437_148620500	0.359076	GLI1..3.p2	AK162400|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	BC037949|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	AK155276|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	NM_001177576|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm9_v1_chr16_-_52453104_52453136	0.357901	GLI1..3.p2	AK053201|Alcam|11658|activated leukocyte cell adhesion molecule	AK030851|Alcam|11658|activated leukocyte cell adhesion molecule	NM_009655|Alcam|11658|activated leukocyte cell adhesion molecule
mm9_v1_chr1_-_88255943_88256002	0.357446	GLI1..3.p2	AK083307|Ncl|17975|nucleolin	AK161706|Ncl|17975|nucleolin	AK031606|Ncl|17975|nucleolin
mm9_v1_chr17_+_36116868_36116882	0.356757	GLI1..3.p2	BC013243|Gnl1|14670|guanine nucleotide binding protein-like 1
mm9_v1_chr5_+_118317127_118317127	0.356464	GLI1..3.p2	D14552|Nos1|18125|nitric oxide synthase 1, neuronal	NM_008712|Nos1|18125|nitric oxide synthase 1, neuronal
mm9_v1_chr13_-_95992994_95993009	0.355602	GLI1..3.p2	AK043680|Pde8b|218461|phosphodiesterase 8B	AK045991|Pde8b|218461|phosphodiesterase 8B	NM_001170669|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr4_-_43022972_43023183	0.354965	GLI1..3.p2	AY049715|Fancg|60534|Fanconi anemia, complementation group G	BC139763|Fancg|60534|Fanconi anemia, complementation group G	AF112439|Fancg|60534|Fanconi anemia, complementation group G	BC141282|Fancg|60534|Fanconi anemia, complementation group G	AF406951|Fancg|60534|Fanconi anemia, complementation group G	NM_001163233|Fancg|60534|Fanconi anemia, complementation group G	NM_053081|Fancg|60534|Fanconi anemia, complementation group G
mm9_v1_chr11_-_76212561_76212710	0.354463	GLI1..3.p2	BC049614|Nxn|18230|nucleoredoxin	BC004688|Nxn|18230|nucleoredoxin	AK149075|Nxn|18230|nucleoredoxin	AK012352|Nxn|18230|nucleoredoxin	AK048109|Nxn|18230|nucleoredoxin	BC058244|Nxn|18230|nucleoredoxin	NM_008750|Nxn|18230|nucleoredoxin
mm9_v1_chr13_-_55463928_55463990	0.353035	GLI1..3.p2	AK014384|Lman2|66890|lectin, mannose-binding 2	BC049221|Lman2|66890|lectin, mannose-binding 2	AK129028|Lman2|66890|lectin, mannose-binding 2	AK169401|Lman2|66890|lectin, mannose-binding 2	AK004952|Lman2|66890|lectin, mannose-binding 2	AK028452|Lman2|66890|lectin, mannose-binding 2	AK150383|Lman2|66890|lectin, mannose-binding 2	AK083442|Lman2|66890|lectin, mannose-binding 2	AK166953|Lman2|66890|lectin, mannose-binding 2
mm9_v1_chr19_-_33664731_33664800	0.353025	GLI1..3.p2	AK170332|Lipo1|381236|lipase, member O1	AK139790|Lipo1|381236|lipase, member O1	NM_001013770|Lipo1|381236|lipase, member O1
mm9_v1_chr8_-_67373807_67373950	0.352881	GLI1..3.p2	AK220570|Klhl2|77113|kelch-like 2, Mayven (Drosophila)
mm9_v1_chr6_-_128305798_128305874	0.35236	GLI1..3.p2	BC060068|Tulp3|22158|tubby-like protein 3	AB016963|Tulp3|22158|tubby-like protein 3	AF045582|Tulp3|22158|tubby-like protein 3	AK035363|Tulp3|22158|tubby-like protein 3	AK009482|Tulp3|22158|tubby-like protein 3	AK142527|Tulp3|22158|tubby-like protein 3	NM_011657|Tulp3|22158|tubby-like protein 3
mm9_v1_chr5_-_143084748_143084767	0.352302	GLI1..3.p2	AK132153|Mmd2|75104|monocyte to macrophage differentiation-associated 2
mm9_v1_chr15_-_32174172_32174174	0.351816	GLI1..3.p2	AK007520|Snord123|66835|small nucleolar RNA, C/D box 123
mm9_v1_chr1_+_93247592_93247649	0.351739	GLI1..3.p2	AK146580|Klhl30|70788|kelch-like 30 (Drosophila)	AK148398|Klhl30|70788|kelch-like 30 (Drosophila)	AK086025|Klhl30|70788|kelch-like 30 (Drosophila)	NM_027551|Klhl30|70788|kelch-like 30 (Drosophila)
mm9_v1_chr2_-_175032305_175032443	0.351507	GLI1..3.p2	BC086920|Gm6710|626832|predicted gene 6710	U62393|Gm6710|626832|predicted gene 6710	AK169456|Gm14391|665001|predicted gene 14391	NM_001164689|Gm6710|626832|predicted gene 6710	AK013829|Gm14391|665001|predicted gene 14391	NM_001099308|Gm14391|665001|predicted gene 14391	NM_001177480|Gm14391|665001|predicted gene 14391	AK013921|Gm6710|626832|predicted gene 6710
mm9_v1_chr15_-_77473707_77473715	0.350136	GLI1..3.p2	AY662646|Apol11b|328563|apolipoprotein L 11b	AK039744|Apol11b|328563|apolipoprotein L 11b	NM_001143686|Apol11b|328563|apolipoprotein L 11b
mm9_v1_chr10_-_100051871_100051900	0.350113	GLI1..3.p2	AK160693|4930430F08Rik|68281|RIKEN cDNA 4930430F08 gene	AK036647|4930430F08Rik|68281|RIKEN cDNA 4930430F08 gene	AK085292|4930430F08Rik|68281|RIKEN cDNA 4930430F08 gene	AK077761|4930430F08Rik|68281|RIKEN cDNA 4930430F08 gene	AK078231|4930430F08Rik|68281|RIKEN cDNA 4930430F08 gene	NM_175128|4930430F08Rik|68281|RIKEN cDNA 4930430F08 gene
mm9_v1_chr1_-_53009546_53009683	0.349939	GLI1..3.p2	AK010944|1700019D03Rik|67080|RIKEN cDNA 1700019D03 gene	AK010796|1700019D03Rik|67080|RIKEN cDNA 1700019D03 gene	NM_144953|1700019D03Rik|67080|RIKEN cDNA 1700019D03 gene
mm9_v1_chr12_-_119539840_119539861	0.349013	GLI1..3.p2	U62522|Sp4|20688|trans-acting transcription factor 4	BC076630|Sp4|20688|trans-acting transcription factor 4
mm9_v1_chr12_+_111685371_111685434	0.34551	GLI1..3.p2	NM_001135001|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr11_-_53244254_53244338	0.345262	GLI1..3.p2	BC027809|Uqcrq|22272|ubiquinol-cytochrome c reductase, complex III subunit VII	AK007982|Uqcrq|22272|ubiquinol-cytochrome c reductase, complex III subunit VII	AK017907|Uqcrq|22272|ubiquinol-cytochrome c reductase, complex III subunit VII	AK002389|Uqcrq|22272|ubiquinol-cytochrome c reductase, complex III subunit VII	AK005374|Uqcrq|22272|ubiquinol-cytochrome c reductase, complex III subunit VII	BC028519|Uqcrq|22272|ubiquinol-cytochrome c reductase, complex III subunit VII	AK003160|Uqcrq|22272|ubiquinol-cytochrome c reductase, complex III subunit VII	NM_025352|Uqcrq|22272|ubiquinol-cytochrome c reductase, complex III subunit VII
mm9_v1_chr8_+_22887026_22887070	0.345048	GLI1..3.p2	NM_007843|Defb1|13214|defensin beta 1	AK142544|Defb1|13214|defensin beta 1	BC024380|Defb1|13214|defensin beta 1
mm9_v1_chr9_+_108997946_108997990	0.344494	GLI1..3.p2	NM_172775|Plxnb1|235611|plexin B1
mm9_v1_chr4_+_129013245_129013310	0.3436	GLI1..3.p2	BC094629|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	AK132279|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	BC046825|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	AK008007|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	BC125606|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	BC125608|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	NM_025970|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	AK007377|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	AY071852|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	BC026442|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	BC037657|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand
mm9_v1_chr2_-_91803660_91803893	0.342996	GLI1..3.p2	NM_138306|Dgkz|104418|diacylglycerol kinase zeta	BC049228|Dgkz|104418|diacylglycerol kinase zeta
mm9_v1_chr10_+_62801950_62801991	0.342682	GLI1..3.p2	AK044604|Gm10114|791398|predicted gene 10114
mm9_v1_chr3_+_14533787_14533872	0.342672	GLI1..3.p2	AK004646|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	NM_001163579|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	NM_001163580|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	NM_028915|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	BC138734|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	BC138735|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	BC099680|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	BC061202|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	AK030355|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	AK016559|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	AK173256|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	AK029563|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1
mm9_v1_chr15_-_31460752_31460820	0.34042	GLI1..3.p2	AK132461|March6|223455|membrane-associated ring finger (C3HC4) 6	AK089827|March6|223455|membrane-associated ring finger (C3HC4) 6	NM_172606|March6|223455|membrane-associated ring finger (C3HC4) 6
mm9_v1_chr6_+_60894310_60894310	0.340237	GLI1..3.p2	NM_001163507|Mmrn1|70945|multimerin 1	NM_027613|Mmrn1|70945|multimerin 1
mm9_v1_chr14_-_76956664_76956695	0.339753	GLI1..3.p2	BC100483|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	BC115492|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	BC115493|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2
mm9_v1_chr11_-_90499370_90499421	0.339451	GLI1..3.p2	BC032881|Stxbp4|20913|syntaxin binding protein 4	AK012293|Stxbp4|20913|syntaxin binding protein 4	AK032998|Stxbp4|20913|syntaxin binding protein 4	AK049001|Stxbp4|20913|syntaxin binding protein 4	NM_011505|Stxbp4|20913|syntaxin binding protein 4
mm9_v1_chr5_-_147396407_147396450	0.339221	GLI1..3.p2	D21061|Gpr12|14738|G-protein coupled receptor 12
mm9_v1_chr9_-_36954842_36954852	0.33884	GLI1..3.p2	AK144270|Pknox2|208076|Pbx/knotted 1 homeobox 2	AK084178|Pknox2|208076|Pbx/knotted 1 homeobox 2	AK082952|Pknox2|208076|Pbx/knotted 1 homeobox 2	NM_001029838|Pknox2|208076|Pbx/knotted 1 homeobox 2
mm9_v1_chr11_-_108205158_108205183	0.337824	GLI1..3.p2	X52684|Prkca|18750|protein kinase C, alpha	X52685|Prkca|18750|protein kinase C, alpha
mm9_v1_chr16_+_10545479_10545491	0.335964	GLI1..3.p2	AK122255|Clec16a|74374|C-type lectin domain family 16, member A	NM_177562|Clec16a|74374|C-type lectin domain family 16, member A	AK155314|Clec16a|74374|C-type lectin domain family 16, member A
mm9_v1_chr16_+_17276720_17276769	0.334387	GLI1..3.p2	BC058760|Tmem191c|224019|transmembrane protein 191C
mm9_v1_chr9_-_114549148_114549229	0.333948	GLI1..3.p2	AK149944|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	AK167288|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	BC025554|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	AK029103|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	NM_153585|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	AK080503|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	AK157824|Cnot10|78893|CCR4-NOT transcription complex, subunit 10
mm9_v1_chr1_+_74838580_74838629	0.33334	GLI1..3.p2	BC014737|Wnt10a|22409|wingless related MMTV integration site 10a	NM_009518|Wnt10a|22409|wingless related MMTV integration site 10a
mm9_v1_chr1_+_138362933_138362977	0.333158	GLI1..3.p2	AK087451|Kif14|381293|kinesin family member 14
mm9_v1_chr4_+_137476662_137476741	0.332643	GLI1..3.p2	AK163790|Ece1|230857|endothelin converting enzyme 1
mm9_v1_chr8_+_28153059_28153137	0.331539	GLI1..3.p2	AK049905|Prosc|114863|proline synthetase co-transcribed	BC047992|Prosc|114863|proline synthetase co-transcribed	AK160172|Prosc|114863|proline synthetase co-transcribed	AK032308|Prosc|114863|proline synthetase co-transcribed	AK134549|Prosc|114863|proline synthetase co-transcribed	AK191605|Prosc|114863|proline synthetase co-transcribed	AK203439|Prosc|114863|proline synthetase co-transcribed
mm9_v1_chr3_-_90318178_90318313	0.331279	GLI1..3.p2	AK017279|S100a1|20193|S100 calcium binding protein A1	AK168822|S100a1|20193|S100 calcium binding protein A1	AK002721|S100a1|20193|S100 calcium binding protein A1	AF087687|S100a1|20193|S100 calcium binding protein A1	AK012578|S100a1|20193|S100 calcium binding protein A1	NM_011309|S100a1|20193|S100 calcium binding protein A1	BC005590|S100a1|20193|S100 calcium binding protein A1
mm9_v1_chr9_-_20757236_20757422	0.330863	GLI1..3.p2	AK013247|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1	BC053047|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1	BC048148|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1	AK143578|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1	X14805|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1	AK147143|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1	NM_010066|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1	AF162282|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1	U70051|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1
mm9_v1_chr2_-_176097168_176097202	0.330787	GLI1..3.p2	BC081427|100043387|100043387|predicted gene, 100043387	NM_001099327|100043387|100043387|predicted gene, 100043387	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	BC100574|100043387|100043387|predicted gene, 100043387	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr7_+_52242287_52242317	0.328036	GLI1..3.p2	
mm9_v1_chr11_-_70460333_70460538	0.326248	GLI1..3.p2	AK186207|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	AK009824|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	AK168951|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	AK009487|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	BC019631|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	NM_024211|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	BC003455|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11
mm9_v1_chr7_-_86611065_86611158	0.32459	GLI1..3.p2	BC080291|Polg|18975|polymerase (DNA directed), gamma	BC061472|Polg|18975|polymerase (DNA directed), gamma	AK135341|Polg|18975|polymerase (DNA directed), gamma	U53584|Polg|18975|polymerase (DNA directed), gamma	AK133584|Polg|18975|polymerase (DNA directed), gamma	BC053024|Polg|18975|polymerase (DNA directed), gamma	AK148091|Polg|18975|polymerase (DNA directed), gamma	NM_017462|Polg|18975|polymerase (DNA directed), gamma
mm9_v1_chr5_-_139801315_139801476	0.323655	GLI1..3.p2	NM_172723|Adap1|231821|ArfGAP with dual PH domains 1
mm9_v1_chr2_+_176493041_176493076	0.323379	GLI1..3.p2	BC100574|100043387|100043387|predicted gene, 100043387	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001099327|100043387|100043387|predicted gene, 100043387	BC081427|100043387|100043387|predicted gene, 100043387	BC099603|100043387|100043387|predicted gene, 100043387
mm9_v1_chr11_+_59476181_59476356	0.323365	GLI1..3.p2	AK155630|Mprip|26936|myosin phosphatase Rho interacting protein	AK044512|Mprip|26936|myosin phosphatase Rho interacting protein	BC049803|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr1_+_137914574_137914625	0.322854	GLI1..3.p2	NM_025439|Tmem9|66241|transmembrane protein 9	AK005248|Tmem9|66241|transmembrane protein 9	AK021225|Tmem9|66241|transmembrane protein 9	AK154423|Tmem9|66241|transmembrane protein 9	BC016524|Tmem9|66241|transmembrane protein 9	AK134909|Tmem9|66241|transmembrane protein 9	BC048017|Tmem9|66241|transmembrane protein 9	BC020291|Tmem9|66241|transmembrane protein 9
mm9_v1_chr12_+_103996146_103996313	0.32195	GLI1..3.p2	BC094323|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK088208|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK146308|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	NM_025666|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	BC094423|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK017542|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK149989|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK011968|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK155611|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)
mm9_v1_chr15_+_99869071_99869185	0.318597	GLI1..3.p2	NM_001159361|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	AK147562|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm9_v1_chr8_+_24249481_24249576	0.318094	GLI1..3.p2	U73972|Ank1|11733|ankyrin 1, erythroid	BC061219|Ank1|11733|ankyrin 1, erythroid	AK134267|Ank1|11733|ankyrin 1, erythroid
mm9_v1_chr18_+_35758269_35758376	0.315235	GLI1..3.p2	AK146327|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK167545|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK169207|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK169411|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK154453|Paip2|67869|polyadenylate-binding protein-interacting protein 2	BC010190|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK150957|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK005462|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK009909|Paip2|67869|polyadenylate-binding protein-interacting protein 2	NM_026420|Paip2|67869|polyadenylate-binding protein-interacting protein 2
mm9_v1_chr1_-_34899809_34899850	0.315074	GLI1..3.p2	BC043098|Fam168b|214469|family with sequence similarity 168, member B
mm9_v1_chr15_+_75740152_75740190	0.311655	GLI1..3.p2	AK051177|Tigd5|105734|tigger transposable element derived 5	BC099838|Tigd5|105734|tigger transposable element derived 5	NM_178646|Tigd5|105734|tigger transposable element derived 5	AK036241|Tigd5|105734|tigger transposable element derived 5	AK086663|Tigd5|105734|tigger transposable element derived 5	AK165093|Tigd5|105734|tigger transposable element derived 5	BC138289|Tigd5|105734|tigger transposable element derived 5
mm9_v1_chr3_-_104024291_104024328	0.311124	GLI1..3.p2	AK018328|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3	NM_001159354|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3	NM_133853|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3
mm9_v1_chr4_+_43740152_43740309	0.309985	GLI1..3.p2	BC096573|Hrct1|100039781|histidine rich carboxyl terminus 1
mm9_v1_chr2_-_177183009_177183079	0.309649	GLI1..3.p2	BC092145|Gm14322|626802|predicted gene 14322
mm9_v1_chr8_+_91045232_91045286	0.30918	GLI1..3.p2	AK166564|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	NM_027280|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AK076164|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AK082367|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	BC034838|Nkd1|93960|naked cuticle 1 homolog (Drosophila)
mm9_v1_chr7_-_134004976_134004976	0.309139	GLI1..3.p2	BC026475|Ino80e|233875|INO80 complex subunit E	NM_153580|Ino80e|233875|INO80 complex subunit E
mm9_v1_chr14_+_27399015_27399092	0.309065	GLI1..3.p2	AK054295|Fam116a|211922|family with sequence similarity 116, member A	NM_001134465|Fam116a|211922|family with sequence similarity 116, member A	NM_145969|Fam116a|211922|family with sequence similarity 116, member A	AK132219|Fam116a|211922|family with sequence similarity 116, member A	AK131163|Fam116a|211922|family with sequence similarity 116, member A	BC025603|Fam116a|211922|family with sequence similarity 116, member A	AK161908|Fam116a|211922|family with sequence similarity 116, member A	AK054197|Fam116a|211922|family with sequence similarity 116, member A
mm9_v1_chr8_+_35217685_35217743	0.308498	GLI1..3.p2	AK007787|Tmem66|67887|transmembrane protein 66	AK075744|Tmem66|67887|transmembrane protein 66	AK088728|Tmem66|67887|transmembrane protein 66
mm9_v1_chr15_-_102341090_102341132	0.307483	GLI1..3.p2	AK166435|Map3k12|26404|mitogen-activated protein kinase kinase kinase 12
mm9_v1_chr10_-_100051657_100051858	0.307107	GLI1..3.p2	AK015251|4930430F08Rik|68281|RIKEN cDNA 4930430F08 gene	AK043358|4930430F08Rik|68281|RIKEN cDNA 4930430F08 gene	BC082587|4930430F08Rik|68281|RIKEN cDNA 4930430F08 gene	AK082894|4930430F08Rik|68281|RIKEN cDNA 4930430F08 gene	AK032226|4930430F08Rik|68281|RIKEN cDNA 4930430F08 gene
mm9_v1_chr11_+_74644441_74644466	0.307083	GLI1..3.p2	AK147933|Mnt|17428|max binding protein
mm9_v1_chr2_+_20441139_20441459	0.305908	GLI1..3.p2	NM_001177630|Etl4|208618|enhancer trap locus 4	NM_001177631|Etl4|208618|enhancer trap locus 4	AK147510|Etl4|208618|enhancer trap locus 4	AB093289|Etl4|208618|enhancer trap locus 4	BC158051|Etl4|208618|enhancer trap locus 4	BC172143|Etl4|208618|enhancer trap locus 4	BC050016|Etl4|208618|enhancer trap locus 4	AK052733|Etl4|208618|enhancer trap locus 4
mm9_v1_chr1_-_168339909_168339980	0.304961	GLI1..3.p2	AK031716|Pogk|71592|pogo transposable element with KRAB domain	BC072587|Pogk|71592|pogo transposable element with KRAB domain	AK048067|Pogk|71592|pogo transposable element with KRAB domain	AK048752|Pogk|71592|pogo transposable element with KRAB domain	AK053898|Pogk|71592|pogo transposable element with KRAB domain	NM_001142948|Pogk|71592|pogo transposable element with KRAB domain	NM_175170|Pogk|71592|pogo transposable element with KRAB domain
mm9_v1_chr2_+_35413977_35414092	0.303246	GLI1..3.p2	NM_001114125|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	DQ473307|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr9_-_44262788_44262849	0.302302	GLI1..3.p2	DQ358978|Upk2|22269|uroplakin 2	BC104260|Upk2|22269|uroplakin 2	BC104261|Upk2|22269|uroplakin 2	NM_009476|Upk2|22269|uroplakin 2	U08030|Upk2|22269|uroplakin 2
mm9_v1_chr17_-_24580009_24580045	0.30165	GLI1..3.p2	BC106188|Dnase1l2|66705|deoxyribonuclease 1-like 2	AK014633|Dnase1l2|66705|deoxyribonuclease 1-like 2	AK003619|Dnase1l2|66705|deoxyribonuclease 1-like 2	NM_025718|Dnase1l2|66705|deoxyribonuclease 1-like 2
mm9_v1_chr7_+_127039805_127039805	0.301576	GLI1..3.p2	AK009135|Lyrm1|73919|LYR motif containing 1	NM_029610|Lyrm1|73919|LYR motif containing 1
mm9_v1_chr8_-_35209773_35209872	0.300931	GLI1..3.p2	AK159401|Leprotl1|68192|leptin receptor overlapping transcript-like 1	BC004677|Leprotl1|68192|leptin receptor overlapping transcript-like 1	NM_026609|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK003329|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK153277|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK075740|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK150289|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK154712|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK013870|Leprotl1|68192|leptin receptor overlapping transcript-like 1
mm9_v1_chr15_-_89422293_89422353	0.299042	GLI1..3.p2	AK170205|Rabl2|68708|RAB, member of RAS oncogene family-like 2	AK004012|Rabl2|68708|RAB, member of RAS oncogene family-like 2	BC030376|Rabl2|68708|RAB, member of RAS oncogene family-like 2	AK051232|Rabl2|68708|RAB, member of RAS oncogene family-like 2	NM_026817|Rabl2|68708|RAB, member of RAS oncogene family-like 2
mm9_v1_chrX_-_133275812_133275890	0.29867	GLI1..3.p2	AK089963|Morf4l2|56397|mortality factor 4 like 2	AK153146|Morf4l2|56397|mortality factor 4 like 2	AK075946|Morf4l2|56397|mortality factor 4 like 2	AK131944|Morf4l2|56397|mortality factor 4 like 2	AK145686|Morf4l2|56397|mortality factor 4 like 2	AK150401|Morf4l2|56397|mortality factor 4 like 2	AK150670|Morf4l2|56397|mortality factor 4 like 2	AK151570|Morf4l2|56397|mortality factor 4 like 2	AK159179|Morf4l2|56397|mortality factor 4 like 2	AK160012|Morf4l2|56397|mortality factor 4 like 2	AK164433|Morf4l2|56397|mortality factor 4 like 2	AK165985|Morf4l2|56397|mortality factor 4 like 2	AK159145|Morf4l2|56397|mortality factor 4 like 2	NM_001168226|Morf4l2|56397|mortality factor 4 like 2	NM_001168229|Morf4l2|56397|mortality factor 4 like 2
mm9_v1_chr7_-_25372613_25372684	0.295119	GLI1..3.p2	AK138180|Zfp575|101544|zinc finger protein 575	BC150867|Zfp575|101544|zinc finger protein 575	BC150873|Zfp575|101544|zinc finger protein 575	AK159025|Zfp575|101544|zinc finger protein 575	NM_001033205|Zfp575|101544|zinc finger protein 575
mm9_v1_chr15_-_81560302_81560307	0.294993	GLI1..3.p2	AK159930|Rangap1|19387|RAN GTPase activating protein 1	BC014855|Rangap1|19387|RAN GTPase activating protein 1	AK146670|Rangap1|19387|RAN GTPase activating protein 1
mm9_v1_chr2_-_66472709_66472813	0.29439	GLI1..3.p2	BC158048|Scn9a|20274|sodium channel, voltage-gated, type IX, alpha	BC172147|Scn9a|20274|sodium channel, voltage-gated, type IX, alpha	AK142068|Scn9a|20274|sodium channel, voltage-gated, type IX, alpha
mm9_v1_chr7_+_28284335_28284344	0.293271	GLI1..3.p2	AJ222968|Prx|19153|periaxin	AJ222969|Prx|19153|periaxin	NM_019412|Prx|19153|periaxin	NM_198048|Prx|19153|periaxin
mm9_v1_chr11_+_85413817_85413884	0.29178	GLI1..3.p2	AK078571|7030407E18Rik|399600|RIKEN cDNA 7030407E18 gene
mm9_v1_chr7_-_19271340_19271380	0.290116	GLI1..3.p2	NM_054058|Psg20|434540|pregnancy-specific glycoprotein 20	AF113598|Psg28|114871|pregnancy-specific glycoprotein 28
mm9_v1_chr14_+_32064678_32064794	0.288961	GLI1..3.p2	BC050901|Bap1|104416|Brca1 associated protein 1	BC042489|Bap1|104416|Brca1 associated protein 1	AK129108|Bap1|104416|Brca1 associated protein 1	AB047820|Bap1|104416|Brca1 associated protein 1
mm9_v1_chr11_-_3309093_3309186	0.288208	GLI1..3.p2	AB005131|Limk2|16886|LIM motif-containing protein kinase 2	U88618|Limk2|16886|LIM motif-containing protein kinase 2	AK161560|Limk2|16886|LIM motif-containing protein kinase 2	AK042206|Limk2|16886|LIM motif-containing protein kinase 2	AK044582|Limk2|16886|LIM motif-containing protein kinase 2	BC007129|Limk2|16886|LIM motif-containing protein kinase 2	AB008117|Limk2|16886|LIM motif-containing protein kinase 2
mm9_v1_chr8_-_125769587_125769604	0.286842	GLI1..3.p2	AK210076|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene
mm9_v1_chr7_+_13466525_13466568	0.28656	GLI1..3.p2	AK132244|Zfp128|243833|zinc finger protein 128	AK035906|Zfp128|243833|zinc finger protein 128	NM_153802|Zfp128|243833|zinc finger protein 128	AK032046|Zfp128|243833|zinc finger protein 128	BC088998|Zfp128|243833|zinc finger protein 128	BC094248|Zfp128|243833|zinc finger protein 128	AF480861|Zfp128|243833|zinc finger protein 128
mm9_v1_chr5_-_24263660_24263660	0.285968	GLI1..3.p2	AF445456|Crygn|214301|crystallin, gamma N	BC120913|Crygn|214301|crystallin, gamma N	NM_153076|Crygn|214301|crystallin, gamma N
mm9_v1_chr18_-_20160536_20160597	0.285721	GLI1..3.p2	BC144845|Dsc3|13507|desmocollin 3	NM_007882|Dsc3|13507|desmocollin 3	Y11169|Dsc3|13507|desmocollin 3
mm9_v1_chr11_-_106576550_106576578	0.284774	GLI1..3.p2	AK084527|Pecam1|18613|platelet/endothelial cell adhesion molecule 1	AK169431|Pecam1|18613|platelet/endothelial cell adhesion molecule 1	BC008519|Pecam1|18613|platelet/endothelial cell adhesion molecule 1
mm9_v1_chr19_+_18706439_18706451	0.283929	GLI1..3.p2	AK169962|BC016495|225994|cDNA sequence BC016495
mm9_v1_chrX_-_16488889_16488889	0.282737	GLI1..3.p2	BC090623|Ndp|17986|Norrie disease (pseudoglioma) (human)	NM_010883|Ndp|17986|Norrie disease (pseudoglioma) (human)
mm9_v1_chr11_-_58143825_58143860	0.282067	GLI1..3.p2	AK140012|Gm9900|100038519|predicted gene 9900
mm9_v1_chr9_+_110558996_110559065	0.280362	GLI1..3.p2	AK012610|Ccdc12|72654|coiled-coil domain containing 12	NM_028312|Ccdc12|72654|coiled-coil domain containing 12	BC026668|Ccdc12|72654|coiled-coil domain containing 12
mm9_v1_chrX_+_158155484_158155558	0.279013	GLI1..3.p2	NM_198409|Rai2|24004|retinoic acid induced 2	BC061184|Rai2|24004|retinoic acid induced 2
mm9_v1_chr12_+_112512884_112512979	0.278995	GLI1..3.p2	AK088429|Amn|93835|amnionless
mm9_v1_chr5_-_3647805_3647982	0.278726	GLI1..3.p2	BC019449|Gatad1|67210|GATA zinc finger domain containing 1	AK078416|Gatad1|67210|GATA zinc finger domain containing 1	AB047921|Gatad1|67210|GATA zinc finger domain containing 1	AK012921|Gatad1|67210|GATA zinc finger domain containing 1	NM_026033|Gatad1|67210|GATA zinc finger domain containing 1
mm9_v1_chrX_+_68617918_68617964	0.275889	GLI1..3.p2	BC056376|Mtmr1|53332|myotubularin related protein 1	NM_016985|Mtmr1|53332|myotubularin related protein 1	BC057337|Mtmr1|53332|myotubularin related protein 1	AF073997|Mtmr1|53332|myotubularin related protein 1
mm9_v1_chr1_-_162142846_162143024	0.275165	GLI1..3.p2	U97327|Cacybp|12301|calcyclin binding protein	AK089043|Cacybp|12301|calcyclin binding protein	AK177869|Cacybp|12301|calcyclin binding protein	BC025948|Cacybp|12301|calcyclin binding protein	NM_009786|Cacybp|12301|calcyclin binding protein	AK013924|Cacybp|12301|calcyclin binding protein	AK145013|Cacybp|12301|calcyclin binding protein
mm9_v1_chr11_+_29641691_29641734	0.275104	GLI1..3.p2	AK003859|Rtn4|68585|reticulon 4
mm9_v1_chr11_+_29642059_29642120	0.275	GLI1..3.p2	AK213159|Rtn4|68585|reticulon 4	AK218108|Rtn4|68585|reticulon 4
mm9_v1_chr4_+_155384263_155384331	0.274737	GLI1..3.p2	AK087335|Sdf4|20318|stromal cell derived factor 4
mm9_v1_chr6_-_125115316_125115426	0.274554	GLI1..3.p2	BC096042|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase
mm9_v1_chr5_-_137974398_137974535	0.273767	GLI1..3.p2	BC062178|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	AK002604|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	AK151628|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	NM_010312|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	Y11970|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	AK146941|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2
mm9_v1_chr4_+_101390232_101390324	0.273115	GLI1..3.p2	AK143989|Lepr|16847|leptin receptor
mm9_v1_chr9_+_117161650_117161701	0.271798	GLI1..3.p2	
mm9_v1_chr18_+_37424591_37424651	0.27131	GLI1..3.p2	BC132112|Pcdhb1|93872|protocadherin beta 1	BC132296|Pcdhb1|93872|protocadherin beta 1	AY013770|Pcdhb1|93872|protocadherin beta 1	NM_053126|Pcdhb1|93872|protocadherin beta 1
mm9_v1_chrX_-_141122722_141122821	0.270389	GLI1..3.p2	AF060107|Trpc5|22067|transient receptor potential cation channel, subfamily C, member 5	NM_009428|Trpc5|22067|transient receptor potential cation channel, subfamily C, member 5	AK021052|Trpc5|22067|transient receptor potential cation channel, subfamily C, member 5
mm9_v1_chr2_+_119177025_119177036	0.269758	GLI1..3.p2	AK007378|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)	BC025169|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)
mm9_v1_chr17_-_36034316_36034327	0.269223	GLI1..3.p2	NM_001033630|2310061I04Rik|69662|RIKEN cDNA 2310061I04 gene
mm9_v1_chr10_+_81111813_81111813	0.266927	GLI1..3.p2	BC057364|Gm10778|100233208|predicted gene 10778	NM_001142963|Gm10778|100233208|predicted gene 10778
mm9_v1_chr2_-_91802081_91802083	0.26632	GLI1..3.p2	
mm9_v1_chr5_-_33560819_33560886	0.264921	GLI1..3.p2	BC017616|Spon2|100689|spondin 2, extracellular matrix protein	AK028987|Spon2|100689|spondin 2, extracellular matrix protein	AK042840|Spon2|100689|spondin 2, extracellular matrix protein	NM_133903|Spon2|100689|spondin 2, extracellular matrix protein
mm9_v1_chr10_-_70622370_70622639	0.264703	GLI1..3.p2	AF319464|Bicc1|83675|bicaudal C homolog 1 (Drosophila)	BC111523|Bicc1|83675|bicaudal C homolog 1 (Drosophila)	NM_031397|Bicc1|83675|bicaudal C homolog 1 (Drosophila)	AK076154|Bicc1|83675|bicaudal C homolog 1 (Drosophila)
mm9_v1_chr8_+_87583954_87584056	0.264287	GLI1..3.p2	AK156709|Fbxw9|68628|F-box and WD-40 domain protein 9	NM_026791|Fbxw9|68628|F-box and WD-40 domain protein 9	BC043658|Fbxw9|68628|F-box and WD-40 domain protein 9
mm9_v1_chr13_-_58227306_58227430	0.264245	GLI1..3.p2	BC048746|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr11_-_108204983_108205101	0.263588	GLI1..3.p2	BC096493|Prkca|18750|protein kinase C, alpha
mm9_v1_chr15_+_34767109_34767135	0.262907	GLI1..3.p2	AK173110|Kcns2|16539|K+ voltage-gated channel, subfamily S, 2	AK048819|Kcns2|16539|K+ voltage-gated channel, subfamily S, 2	NM_181317|Kcns2|16539|K+ voltage-gated channel, subfamily S, 2
mm9_v1_chr18_-_77286034_77286037	0.26089	GLI1..3.p2	AK017114|Katnal2|71206|katanin p60 subunit A-like 2	NM_027721|Katnal2|71206|katanin p60 subunit A-like 2	AK083612|Katnal2|71206|katanin p60 subunit A-like 2
mm9_v1_chr17_+_46520659_46520738	0.260543	GLI1..3.p2	NM_021346|Zfp318|57908|zinc finger protein 318	NM_207671|Zfp318|57908|zinc finger protein 318
mm9_v1_chr9_+_43942734_43942753	0.26052	GLI1..3.p2	NM_023061|Mcam|84004|melanoma cell adhesion molecule	AB035508|Mcam|84004|melanoma cell adhesion molecule	AB035509|Mcam|84004|melanoma cell adhesion molecule	BC026985|Mcam|84004|melanoma cell adhesion molecule
mm9_v1_chr2_-_22895580_22895680	0.260422	GLI1..3.p2	AY033645|Abi1|11308|abl-interactor 1	AK152061|Abi1|11308|abl-interactor 1	AK152184|Abi1|11308|abl-interactor 1	AK034476|Abi1|11308|abl-interactor 1	BC079642|Abi1|11308|abl-interactor 1	AK151026|Abi1|11308|abl-interactor 1	AK153130|Abi1|11308|abl-interactor 1	AK164040|Abi1|11308|abl-interactor 1
mm9_v1_chr5_-_107718388_107718399	0.258753	GLI1..3.p2	AF039601|Tgfbr3|21814|transforming growth factor, beta receptor III
mm9_v1_chr13_-_4608352_4608430	0.258467	GLI1..3.p2	U68535|Akr1e1|56043|aldo-keto reductase family 1, member E1	AK002507|Akr1e1|56043|aldo-keto reductase family 1, member E1	AK007924|Akr1e1|56043|aldo-keto reductase family 1, member E1	AK028605|Akr1e1|56043|aldo-keto reductase family 1, member E1	BC012692|Akr1e1|56043|aldo-keto reductase family 1, member E1	NM_018859|Akr1e1|56043|aldo-keto reductase family 1, member E1
mm9_v1_chr15_-_57907967_57908070	0.25835	GLI1..3.p2	AK220508|Zhx1|22770|zinc fingers and homeoboxes 1	NM_001042438|Zhx1|22770|zinc fingers and homeoboxes 1	NM_009572|Zhx1|22770|zinc fingers and homeoboxes 1	AK051410|Zhx1|22770|zinc fingers and homeoboxes 1
mm9_v1_chr4_-_43023359_43023400	0.257439	GLI1..3.p2	BC050890|Fancg|60534|Fanconi anemia, complementation group G
mm9_v1_chr17_-_33883718_33884054	0.256747	GLI1..3.p2	AK185495|Rab11b|19326|RAB11B, member RAS oncogene family	AK183371|Rab11b|19326|RAB11B, member RAS oncogene family	AK212544|Rab11b|19326|RAB11B, member RAS oncogene family	AK216799|Rab11b|19326|RAB11B, member RAS oncogene family	AK191328|Rab11b|19326|RAB11B, member RAS oncogene family	AK207155|Rab11b|19326|RAB11B, member RAS oncogene family	AK188994|Rab11b|19326|RAB11B, member RAS oncogene family	AK198020|Rab11b|19326|RAB11B, member RAS oncogene family	AK209656|Rab11b|19326|RAB11B, member RAS oncogene family	AK213397|Rab11b|19326|RAB11B, member RAS oncogene family	AK216399|Rab11b|19326|RAB11B, member RAS oncogene family
mm9_v1_chr14_-_55560793_55560834	0.256007	GLI1..3.p2	
mm9_v1_chr3_+_88373199_88373199	0.25344	GLI1..3.p2	AK207994|Ubqln4|94232|ubiquilin 4
mm9_v1_chr12_+_70298163_70298251	0.252948	GLI1..3.p2	AK161156|9330151L19Rik|414085|RIKEN cDNA 9330151L19 gene	AK154174|9330151L19Rik|414085|RIKEN cDNA 9330151L19 gene	AK034052|9330151L19Rik|414085|RIKEN cDNA 9330151L19 gene
mm9_v1_chr2_+_155207581_155207616	0.250379	GLI1..3.p2	AJ297793|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK146589|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	BC043086|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	NM_178111|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK149495|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr12_+_103366928_103366945	0.249825	GLI1..3.p2	AK044368|Slc24a4|238384|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	AK044239|Slc24a4|238384|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm9_v1_chr12_-_112723995_112724011	0.248792	GLI1..3.p2	AK140917|Gm266|212539|predicted gene 266	AK166394|Gm266|212539|predicted gene 266
mm9_v1_chr16_+_18052952_18053027	0.246758	GLI1..3.p2	AK019346|Dgcr6|13353|DiGeorge syndrome critical region gene 6	NM_010047|Dgcr6|13353|DiGeorge syndrome critical region gene 6	AK160342|Dgcr6|13353|DiGeorge syndrome critical region gene 6
mm9_v1_chr11_+_88006704_88006818	0.245977	GLI1..3.p2	BC027667|Cuedc1|103841|CUE domain containing 1	BC051492|Cuedc1|103841|CUE domain containing 1
mm9_v1_chr2_+_143741050_143741074	0.245674	GLI1..3.p2	NM_019771|Dstn|56431|destrin
mm9_v1_chr5_-_122497833_122497833	0.245507	GLI1..3.p2	BC065113|Cux2|13048|cut-like homeobox 2	NM_007804|Cux2|13048|cut-like homeobox 2
mm9_v1_chr3_-_97672119_97672138	0.243769	GLI1..3.p2	AK083867|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	AK051209|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr4_-_115690263_115690388	0.243322	GLI1..3.p2	U82536|Faah|14073|fatty acid amide hydrolase	AK032079|Faah|14073|fatty acid amide hydrolase	BC006863|Faah|14073|fatty acid amide hydrolase	AK004985|Faah|14073|fatty acid amide hydrolase	AK080603|Faah|14073|fatty acid amide hydrolase
mm9_v1_chr8_+_108214805_108214805	0.241894	GLI1..3.p2	AK031012|Rltpr|234695|RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing	NM_001033320|Rltpr|234695|RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing
mm9_v1_chrX_+_63906333_63906333	0.241648	GLI1..3.p2	BC111888|Slitrk2|245450|SLIT and NTRK-like family, member 2	BC112406|Slitrk2|245450|SLIT and NTRK-like family, member 2	NM_198863|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr7_-_97278443_97278523	0.240408	GLI1..3.p2	AK019082|2310010J17Rik|78329|RIKEN cDNA 2310010J17 gene
mm9_v1_chr15_-_83082156_83082203	0.240266	GLI1..3.p2	AK149186|A4galt|239559|alpha 1,4-galactosyltransferase	AK162529|A4galt|239559|alpha 1,4-galactosyltransferase	AY371179|A4galt|239559|alpha 1,4-galactosyltransferase	NM_001170954|A4galt|239559|alpha 1,4-galactosyltransferase	AK139833|A4galt|239559|alpha 1,4-galactosyltransferase	NM_001004150|A4galt|239559|alpha 1,4-galactosyltransferase
mm9_v1_chr2_+_163484110_163484121	0.24014	GLI1..3.p2	AK135505|Pkig|18769|protein kinase inhibitor, gamma	NM_001039390|Pkig|18769|protein kinase inhibitor, gamma	NM_001039391|Pkig|18769|protein kinase inhibitor, gamma	NM_001164055|Pkig|18769|protein kinase inhibitor, gamma
mm9_v1_chr4_+_142939652_142939691	0.237937	GLI1..3.p2	BC129964|Lrrc38|242735|leucine rich repeat containing 38	NM_001162983|Lrrc38|242735|leucine rich repeat containing 38	BC129963|Lrrc38|242735|leucine rich repeat containing 38	AK078190|Lrrc38|242735|leucine rich repeat containing 38	AK038658|Lrrc38|242735|leucine rich repeat containing 38
mm9_v1_chr4_+_149611305_149611392	0.237596	GLI1..3.p2	NM_023119|Eno1|13806|enolase 1, alpha non-neuron	AK002336|Eno1|13806|enolase 1, alpha non-neuron	AK014335|Eno1|13806|enolase 1, alpha non-neuron	AK147987|Eno1|13806|enolase 1, alpha non-neuron	AK150161|Eno1|13806|enolase 1, alpha non-neuron	AK150192|Eno1|13806|enolase 1, alpha non-neuron	AK153321|Eno1|13806|enolase 1, alpha non-neuron	AK002322|Eno1|13806|enolase 1, alpha non-neuron	BC003934|Eno1|13806|enolase 1, alpha non-neuron	AK204692|Eno1|13806|enolase 1, alpha non-neuron	AK088788|Eno1|13806|enolase 1, alpha non-neuron	X52379|Eno1|13806|enolase 1, alpha non-neuron	BC003891|Eno1|13806|enolase 1, alpha non-neuron	BC010685|Eno1|13806|enolase 1, alpha non-neuron	BC083334|Eno1|13806|enolase 1, alpha non-neuron	BC024644|Eno1|13806|enolase 1, alpha non-neuron	BC039179|Eno1|13806|enolase 1, alpha non-neuron
mm9_v1_chr5_+_130620730_130620855	0.237391	GLI1..3.p2	AK162568|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK083583|Kctd7|212919|potassium channel tetramerisation domain containing 7	NM_172509|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK029942|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK034583|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK140606|Kctd7|212919|potassium channel tetramerisation domain containing 7	BC139070|Kctd7|212919|potassium channel tetramerisation domain containing 7	BC141201|Kctd7|212919|potassium channel tetramerisation domain containing 7
mm9_v1_chr7_-_4796261_4796301	0.237144	GLI1..3.p2	NM_172737|Shisa7|232813|shisa homolog 7 (Xenopus laevis)
mm9_v1_chr8_-_127421561_127421610	0.236974	GLI1..3.p2	BC057052|Exoc8|102058|exocyst complex component 8	NM_198103|Exoc8|102058|exocyst complex component 8
mm9_v1_chr5_+_109058850_109059020	0.236942	GLI1..3.p2	AK034579|Tmem175|72392|transmembrane protein 175	AK038865|Tmem175|72392|transmembrane protein 175	AK076446|Tmem175|72392|transmembrane protein 175	AK082765|Tmem175|72392|transmembrane protein 175	AK170273|Tmem175|72392|transmembrane protein 175	AK013879|Tmem175|72392|transmembrane protein 175	BC005542|Tmem175|72392|transmembrane protein 175
mm9_v1_chr7_-_6107051_6107061	0.236564	GLI1..3.p2	
mm9_v1_chr10_+_81274930_81274930	0.236325	GLI1..3.p2	BC057364|Gm10778|100233208|predicted gene 10778	NM_001142963|Gm10778|100233208|predicted gene 10778
mm9_v1_chr1_-_138157449_138157449	0.236029	GLI1..3.p2	NM_001101516|Gpr25|383563|G protein-coupled receptor 25
mm9_v1_chr10_+_94039007_94039007	0.23469	GLI1..3.p2	NM_177026|Tmcc3|319880|transmembrane and coiled coil domains 3
mm9_v1_chr2_+_24008680_24008706	0.234663	GLI1..3.p2	AK009787|Il1f8|69677|interleukin 1 family, member 8	BC119517|Il1f8|69677|interleukin 1 family, member 8	NM_027163|Il1f8|69677|interleukin 1 family, member 8	AY071842|Il1f8|69677|interleukin 1 family, member 8
mm9_v1_chr15_-_81560283_81560301	0.234375	GLI1..3.p2	BC071200|Rangap1|19387|RAN GTPase activating protein 1	AK159009|Rangap1|19387|RAN GTPase activating protein 1
mm9_v1_chr18_-_64648683_64648745	0.233619	GLI1..3.p2	AK083560|Fech|14151|ferrochelatase	BC094548|Fech|14151|ferrochelatase	M61215|Fech|14151|ferrochelatase	AK004718|Fech|14151|ferrochelatase	NM_007998|Fech|14151|ferrochelatase	AK018738|Fech|14151|ferrochelatase	AK150685|Fech|14151|ferrochelatase
mm9_v1_chr4_+_126431013_126431096	0.233134	GLI1..3.p2	NM_001035526|AU040320|100317|expressed sequence AU040320	NM_133886|AU040320|100317|expressed sequence AU040320	BC028869|AU040320|100317|expressed sequence AU040320	AK163033|AU040320|100317|expressed sequence AU040320	AK170261|AU040320|100317|expressed sequence AU040320	AK043006|AU040320|100317|expressed sequence AU040320	AK007704|AU040320|100317|expressed sequence AU040320	AK031342|AU040320|100317|expressed sequence AU040320
mm9_v1_chr4_-_40895214_40895296	0.232587	GLI1..3.p2	AK009149|Bag1|12017|BCL2-associated athanogene 1	BC093509|Bag1|12017|BCL2-associated athanogene 1	BC069918|Bag1|12017|BCL2-associated athanogene 1	AF022223|Bag1|12017|BCL2-associated athanogene 1	AK154469|Bag1|12017|BCL2-associated athanogene 1	AK171094|Bag1|12017|BCL2-associated athanogene 1	BC003722|Bag1|12017|BCL2-associated athanogene 1
mm9_v1_chr2_+_119176963_119176993	0.232299	GLI1..3.p2	NM_026929|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)	AK032218|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)
mm9_v1_chr2_-_101679136_101679136	0.23194	GLI1..3.p2	NM_001110849|Prr5l|72446|proline rich 5 like
mm9_v1_chr19_+_8876985_8877044	0.23109	GLI1..3.p2	AK142256|Zbtb3|75291|zinc finger and BTB domain containing 3	NM_133759|Zbtb3|75291|zinc finger and BTB domain containing 3	AK049258|Zbtb3|75291|zinc finger and BTB domain containing 3	BC119186|Zbtb3|75291|zinc finger and BTB domain containing 3	BC119188|Zbtb3|75291|zinc finger and BTB domain containing 3	NM_001098237|Zbtb3|75291|zinc finger and BTB domain containing 3	BC012410|Zbtb3|75291|zinc finger and BTB domain containing 3
mm9_v1_chr1_-_167564449_167564681	0.229617	GLI1..3.p2	AK192253|Mpzl1|68481|myelin protein zero-like 1	AK192408|Mpzl1|68481|myelin protein zero-like 1	AK193736|Mpzl1|68481|myelin protein zero-like 1	AK197743|Mpzl1|68481|myelin protein zero-like 1	AY764248|Mpzl1|68481|myelin protein zero-like 1	BC072563|Mpzl1|68481|myelin protein zero-like 1	AK090278|Mpzl1|68481|myelin protein zero-like 1	AK169385|Mpzl1|68481|myelin protein zero-like 1	AY764247|Mpzl1|68481|myelin protein zero-like 1	NM_001001880|Mpzl1|68481|myelin protein zero-like 1	NM_001083897|Mpzl1|68481|myelin protein zero-like 1
mm9_v1_chr7_+_117265568_117265624	0.22954	GLI1..3.p2	NM_009516|Wee1|22390|WEE 1 homolog 1 (S. pombe)	BC006852|Wee1|22390|WEE 1 homolog 1 (S. pombe)	D30743|Wee1|22390|WEE 1 homolog 1 (S. pombe)
mm9_v1_chr2_+_22924699_22924786	0.229326	GLI1..3.p2	BC084584|Acbd5|74159|acyl-Coenzyme A binding domain containing 5
mm9_v1_chr12_+_112509308_112509323	0.229284	GLI1..3.p2	AK017204|Amn|93835|amnionless	BC087954|Amn|93835|amnionless	AF320619|Amn|93835|amnionless	NM_033603|Amn|93835|amnionless	AK002318|Amn|93835|amnionless
mm9_v1_chr7_-_134027930_134028177	0.228319	GLI1..3.p2	BC077714|Taok2|381921|TAO kinase 2	BC075676|Taok2|381921|TAO kinase 2
mm9_v1_chrX_-_163023624_163023647	0.227886	GLI1..3.p2	AK078534|Egfl6|54156|EGF-like-domain, multiple 6	BC117702|Egfl6|54156|EGF-like-domain, multiple 6	AJ245672|Egfl6|54156|EGF-like-domain, multiple 6	AK053738|Egfl6|54156|EGF-like-domain, multiple 6	NM_019397|Egfl6|54156|EGF-like-domain, multiple 6
mm9_v1_chr10_+_57909613_57909692	0.225846	GLI1..3.p2	AK041932|Ranbp2|19386|RAN binding protein 2	AK145306|Ranbp2|19386|RAN binding protein 2
mm9_v1_chr11_+_106649938_106649986	0.225229	GLI1..3.p2	AK089185|Ccdc45|320162|coiled-coil domain containing 45	AK084665|Ccdc45|320162|coiled-coil domain containing 45
mm9_v1_chr18_+_38409902_38409977	0.224307	GLI1..3.p2	NM_024179|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK035876|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK002437|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK171837|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK079423|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	BC002117|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK141675|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK172900|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene
mm9_v1_chr5_-_137358976_137359001	0.223293	GLI1..3.p2	AJ416092|Emid2|140709|EMI domain containing 2	NM_024474|Emid2|140709|EMI domain containing 2	BC075713|Emid2|140709|EMI domain containing 2	AK076445|Emid2|140709|EMI domain containing 2	AK133882|Emid2|140709|EMI domain containing 2
mm9_v1_chrX_+_146981959_146981987	0.223287	GLI1..3.p2	NM_001102446|Alas2|11656|aminolevulinic acid synthase 2, erythroid	NM_009653|Alas2|11656|aminolevulinic acid synthase 2, erythroid	AK077610|Alas2|11656|aminolevulinic acid synthase 2, erythroid
mm9_v1_chr18_+_65960170_65960280	0.222655	GLI1..3.p2	AK003027|Sec11c|66286|SEC11 homolog C (S. cerevisiae)	AK003411|Sec11c|66286|SEC11 homolog C (S. cerevisiae)	AK007641|Sec11c|66286|SEC11 homolog C (S. cerevisiae)	NM_025468|Sec11c|66286|SEC11 homolog C (S. cerevisiae)
mm9_v1_chr14_+_46703700_46703706	0.22178	GLI1..3.p2	AK088453|Gm1821|218963|ubiquitin pseudogene
mm9_v1_chr1_-_173152634_173152646	0.220322	GLI1..3.p2	AK028388|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)	NM_001037170|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)
mm9_v1_chr15_+_78707972_78708024	0.220309	GLI1..3.p2	BC054422|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1	AK170437|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1	AK155195|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1	AK080881|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1	AK159771|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1
mm9_v1_chr7_+_135390456_135390509	0.220026	GLI1..3.p2	AK158409|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	AK085042|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	AK003170|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	AK087114|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	AK156423|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	BC002049|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	AK041233|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	DQ143892|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	DQ143893|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	DQ143894|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1
mm9_v1_chr6_-_115708978_115708979	0.219693	GLI1..3.p2	BC019416|Tmem40|94346|transmembrane protein 40
mm9_v1_chr5_+_137429121_137429188	0.219537	GLI1..3.p2	NM_001163243|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)
mm9_v1_chr11_+_113510855_113510863	0.218814	GLI1..3.p2	AF109377|Cog1|16834|component of oligomeric golgi complex 1	BC063056|Cog1|16834|component of oligomeric golgi complex 1
mm9_v1_chr11_-_73012493_73012562	0.218571	GLI1..3.p2	BC005479|Ctns|83429|cystinosis, nephropathic	BC006033|Ctns|83429|cystinosis, nephropathic	AK079295|Ctns|83429|cystinosis, nephropathic	AK137143|Ctns|83429|cystinosis, nephropathic	NM_031251|Ctns|83429|cystinosis, nephropathic	AK078511|Ctns|83429|cystinosis, nephropathic	AK170790|Ctns|83429|cystinosis, nephropathic	AK054467|Ctns|83429|cystinosis, nephropathic	AK085517|Ctns|83429|cystinosis, nephropathic	AK170828|Ctns|83429|cystinosis, nephropathic
mm9_v1_chr10_+_127848671_127848731	0.218389	GLI1..3.p2	AK045760|Rnf41|67588|ring finger protein 41	NM_001164237|Rnf41|67588|ring finger protein 41	NM_026259|Rnf41|67588|ring finger protein 41	AK030558|Rnf41|67588|ring finger protein 41	BC049078|Rnf41|67588|ring finger protein 41	AF305730|Rnf41|67588|ring finger protein 41
mm9_v1_chr9_+_22215956_22216031	0.218295	GLI1..3.p2	AK220359|9530077C05Rik|68283|RIKEN cDNA 9530077C05 gene	AK021129|9530077C05Rik|68283|RIKEN cDNA 9530077C05 gene	AK170604|9530077C05Rik|68283|RIKEN cDNA 9530077C05 gene	BC054761|9530077C05Rik|68283|RIKEN cDNA 9530077C05 gene	NM_026739|9530077C05Rik|68283|RIKEN cDNA 9530077C05 gene
mm9_v1_chr10_-_126497197_126497239	0.217387	GLI1..3.p2	AK158026|March9|216438|membrane-associated ring finger (C3HC4) 9	NM_001033262|March9|216438|membrane-associated ring finger (C3HC4) 9
mm9_v1_chr4_-_149329097_149329154	0.215711	GLI1..3.p2	AK089767|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	AK160081|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	AK172334|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	BC046787|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	BC057563|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	NM_029035|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	AK030417|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	AK047726|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	AK003707|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	AK040909|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1
mm9_v1_chr8_+_87561055_87561132	0.214454	GLI1..3.p2	NM_001122843|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	BC003275|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)
mm9_v1_chr11_+_106650565_106650638	0.214247	GLI1..3.p2	NM_001166685|Ccdc45|320162|coiled-coil domain containing 45	NM_177088|Ccdc45|320162|coiled-coil domain containing 45	AK076400|Ccdc45|320162|coiled-coil domain containing 45	AK165351|Ccdc45|320162|coiled-coil domain containing 45	BC116308|Ccdc45|320162|coiled-coil domain containing 45	BC116309|Ccdc45|320162|coiled-coil domain containing 45	BC090675|Ccdc45|320162|coiled-coil domain containing 45	AK052705|Ccdc45|320162|coiled-coil domain containing 45
mm9_v1_chr17_-_34752884_34752915	0.213807	GLI1..3.p2	BC139484|Egfl8|81701|EGF-like domain 8	BC141312|Egfl8|81701|EGF-like domain 8	BC145632|Egfl8|81701|EGF-like domain 8	AK148723|Egfl8|81701|EGF-like domain 8	AY635583|Egfl8|81701|EGF-like domain 8	NM_152922|Egfl8|81701|EGF-like domain 8
mm9_v1_chr13_-_58503861_58503861	0.213483	GLI1..3.p2	AK169064|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K
mm9_v1_chr11_+_97702591_97702632	0.21252	GLI1..3.p2	AK081899|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK140210|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK042827|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK031146|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK035650|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK018341|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK080808|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK082773|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene
mm9_v1_chr11_-_69615126_69615217	0.211986	GLI1..3.p2	NM_010198|Fgf11|14166|fibroblast growth factor 11	U66203|Fgf11|14166|fibroblast growth factor 11	BC066859|Fgf11|14166|fibroblast growth factor 11
mm9_v1_chr4_-_134989653_134989790	0.210921	GLI1..3.p2	AK042201|Rcan3|53902|regulator of calcineurin 3	AK155270|Rcan3|53902|regulator of calcineurin 3	NM_022980|Rcan3|53902|regulator of calcineurin 3	AK043916|Rcan3|53902|regulator of calcineurin 3
mm9_v1_chr4_-_151235758_151235857	0.210152	GLI1..3.p2	AK076589|Camta1|100072|calmodulin binding transcription activator 1	BC150740|Camta1|100072|calmodulin binding transcription activator 1	AK034038|Camta1|100072|calmodulin binding transcription activator 1	AK144150|Camta1|100072|calmodulin binding transcription activator 1	AK009988|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr2_-_175163697_175163736	0.210054	GLI1..3.p2	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001099349|Gm14308|100043381|predicted gene 14308	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr1_+_65357830_65357830	0.207411	GLI1..3.p2	AK045576|Pth2r|213527|parathyroid hormone 2 receptor	NM_139270|Pth2r|213527|parathyroid hormone 2 receptor
mm9_v1_chr16_-_96413824_96413863	0.206167	GLI1..3.p2	AK031481|Lca5l|385668|Leber congenital amaurosis 5-like	AK029554|Lca5l|385668|Leber congenital amaurosis 5-like	AK133316|Lca5l|385668|Leber congenital amaurosis 5-like	NM_001001492|Lca5l|385668|Leber congenital amaurosis 5-like
mm9_v1_chr4_-_115690506_115690572	0.206004	GLI1..3.p2	AK079598|Faah|14073|fatty acid amide hydrolase	NM_010173|Faah|14073|fatty acid amide hydrolase	BC052321|Faah|14073|fatty acid amide hydrolase
mm9_v1_chr13_-_70980619_70980688	0.204878	GLI1..3.p2	AK173338|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	AK031314|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	AK134523|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	NM_172053|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	BC034739|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16
mm9_v1_chr10_-_75106702_75106752	0.203921	GLI1..3.p2	AK037127|Susd2|71733|sushi domain containing 2	BC026837|Susd2|71733|sushi domain containing 2	AK004703|Susd2|71733|sushi domain containing 2	AK033823|Susd2|71733|sushi domain containing 2	AK128959|Susd2|71733|sushi domain containing 2	AK028817|Susd2|71733|sushi domain containing 2	AK037059|Susd2|71733|sushi domain containing 2	AK042469|Susd2|71733|sushi domain containing 2	AK038944|Susd2|71733|sushi domain containing 2	AK167155|Susd2|71733|sushi domain containing 2	NM_001162913|Susd2|71733|sushi domain containing 2	NM_027890|Susd2|71733|sushi domain containing 2
mm9_v1_chr11_-_119948111_119948163	0.203365	GLI1..3.p2	D43921|Azi1|12009|5-azacytidine induced gene 1	AK133245|Azi1|12009|5-azacytidine induced gene 1	NM_009734|Azi1|12009|5-azacytidine induced gene 1
mm9_v1_chr2_-_18919637_18919800	0.202526	GLI1..3.p2	AK040558|Pip4k2a|18718|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	BC011097|Pip4k2a|18718|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	AK012196|Pip4k2a|18718|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	NM_008845|Pip4k2a|18718|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
mm9_v1_chr5_-_111239115_111239150	0.20178	GLI1..3.p2	AK154939|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)
mm9_v1_chr17_-_7152648_7152744	0.200811	GLI1..3.p2	AK005904|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)	AK016473|Rsph3b|100037282|radial spoke 3B homolog (Chlamydomonas)	AK161285|Rsph3b|100037282|radial spoke 3B homolog (Chlamydomonas)	AK006083|Rsph3b|100037282|radial spoke 3B homolog (Chlamydomonas)	NM_001083945|Rsph3b|100037282|radial spoke 3B homolog (Chlamydomonas)	AK076872|Rsph3b|100037282|radial spoke 3B homolog (Chlamydomonas)
mm9_v1_chr1_+_174056868_174056950	0.199896	GLI1..3.p2	AK029368|Pex19|19298|peroxisomal biogenesis factor 19	NM_001159525|Pex19|19298|peroxisomal biogenesis factor 19	NM_023041|Pex19|19298|peroxisomal biogenesis factor 19	AK028449|Pex19|19298|peroxisomal biogenesis factor 19	AK075576|Pex19|19298|peroxisomal biogenesis factor 19	AK170175|Pex19|19298|peroxisomal biogenesis factor 19	AK012785|Pex19|19298|peroxisomal biogenesis factor 19	BC019767|Pex19|19298|peroxisomal biogenesis factor 19	Y09046|Pex19|19298|peroxisomal biogenesis factor 19	CT010305|Pex19|19298|peroxisomal biogenesis factor 19	BC012517|Pex19|19298|peroxisomal biogenesis factor 19
mm9_v1_chr4_+_21858472_21858503	0.199891	GLI1..3.p2	AK144924|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	NM_175234|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK081616|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK082464|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK018081|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene
mm9_v1_chr2_+_177493957_177493997	0.199663	GLI1..3.p2	BC092145|Gm14322|626802|predicted gene 14322
mm9_v1_chr18_-_24280308_24280378	0.198125	GLI1..3.p2	BC056426|Ino80c|225280|INO80 complex subunit C	AK083718|Ino80c|225280|INO80 complex subunit C	NM_172625|Ino80c|225280|INO80 complex subunit C	AK077290|Ino80c|225280|INO80 complex subunit C	BC060961|Ino80c|225280|INO80 complex subunit C
mm9_v1_chr7_-_133646767_133646989	0.19765	GLI1..3.p2	BC054483|Atxn2l|233871|ataxin 2-like	NM_183020|Atxn2l|233871|ataxin 2-like	AK155062|Atxn2l|233871|ataxin 2-like	AK084800|Atxn2l|233871|ataxin 2-like
mm9_v1_chr5_+_109058788_109058836	0.197199	GLI1..3.p2	AK049952|Tmem175|72392|transmembrane protein 175	NM_001163531|Tmem175|72392|transmembrane protein 175	NM_001163532|Tmem175|72392|transmembrane protein 175	NM_028223|Tmem175|72392|transmembrane protein 175
mm9_v1_chr14_-_66832383_66832388	0.196917	GLI1..3.p2	BC137704|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	BC144849|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	NM_001162366|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta
mm9_v1_chr11_-_102680999_102681013	0.196721	GLI1..3.p2	BC071230|Gjc1|14615|gap junction protein, gamma 1	NM_001159383|Gjc1|14615|gap junction protein, gamma 1	AY390396|Gjc1|14615|gap junction protein, gamma 1
mm9_v1_chr9_-_110645968_110646189	0.196668	GLI1..3.p2	X78936|Pth1r|19228|parathyroid hormone 1 receptor	NM_001083935|Pth1r|19228|parathyroid hormone 1 receptor
mm9_v1_chr16_-_90284552_90284747	0.196337	GLI1..3.p2	BC053096|Scaf4|224432|SR-related CTD-associated factor 4	AK045266|Scaf4|224432|SR-related CTD-associated factor 4	BC057592|Scaf4|224432|SR-related CTD-associated factor 4	NM_178923|Scaf4|224432|SR-related CTD-associated factor 4	AK048239|Scaf4|224432|SR-related CTD-associated factor 4	AK173120|Scaf4|224432|SR-related CTD-associated factor 4
mm9_v1_chr9_+_46081146_46081375	0.196144	GLI1..3.p2	NM_011752|Zfp259|22687|zinc finger protein 259	AK158995|Zfp259|22687|zinc finger protein 259	AK170372|Zfp259|22687|zinc finger protein 259	AK044472|Zfp259|22687|zinc finger protein 259	AB041612|Zfp259|22687|zinc finger protein 259	BC021397|Zfp259|22687|zinc finger protein 259	AK167849|Zfp259|22687|zinc finger protein 259	AK168061|Zfp259|22687|zinc finger protein 259	AK215085|Zfp259|22687|zinc finger protein 259
mm9_v1_chr11_-_58266424_58266467	0.196069	GLI1..3.p2	AK076838|4930504O13Rik|403200|RIKEN cDNA 4930504O13 gene	BC048595|4930504O13Rik|403200|RIKEN cDNA 4930504O13 gene	NM_207527|4930504O13Rik|403200|RIKEN cDNA 4930504O13 gene
mm9_v1_chr8_+_28153013_28153055	0.194827	GLI1..3.p2	NM_001039077|Prosc|114863|proline synthetase co-transcribed	NM_001039078|Prosc|114863|proline synthetase co-transcribed	NM_054057|Prosc|114863|proline synthetase co-transcribed	BC061045|Prosc|114863|proline synthetase co-transcribed	AK147670|Prosc|114863|proline synthetase co-transcribed
mm9_v1_chr16_+_37011839_37011930	0.194674	GLI1..3.p2	AY074936|Polq|77782|polymerase (DNA directed), theta	AY147862|Polq|77782|polymerase (DNA directed), theta	AY147863|Polq|77782|polymerase (DNA directed), theta	AY147864|Polq|77782|polymerase (DNA directed), theta	NM_001159369|Polq|77782|polymerase (DNA directed), theta	NM_029977|Polq|77782|polymerase (DNA directed), theta	AK020790|Polq|77782|polymerase (DNA directed), theta	BC138360|Polq|77782|polymerase (DNA directed), theta	BC157900|Polq|77782|polymerase (DNA directed), theta
mm9_v1_chr19_+_60965651_60965651	0.194467	GLI1..3.p2	AK135076|Grk5|14773|G protein-coupled receptor kinase 5	NM_018869|Grk5|14773|G protein-coupled receptor kinase 5
mm9_v1_chr12_+_73186837_73186870	0.194248	GLI1..3.p2	AK004555|Jkamp|104771|JNK1/MAPK8-associated membrane protein
mm9_v1_chr7_+_13063644_13063667	0.193215	GLI1..3.p2	AK032301|Zfp606|67370|zinc finger protein 606	AK139269|Zfp606|67370|zinc finger protein 606	NM_001039951|Zfp606|67370|zinc finger protein 606	NM_026112|Zfp606|67370|zinc finger protein 606	AK010575|Zfp606|67370|zinc finger protein 606
mm9_v1_chr3_-_107957795_107957821	0.19283	GLI1..3.p2	AK032627|Gpr61|229714|G protein-coupled receptor 61	AK133702|Gpr61|229714|G protein-coupled receptor 61	NM_175470|Gpr61|229714|G protein-coupled receptor 61
mm9_v1_chr17_-_45686604_45686625	0.192773	GLI1..3.p2	BC079879|Tmem151b|210573|transmembrane protein 151B	NM_001013749|Tmem151b|210573|transmembrane protein 151B
mm9_v1_chr5_-_117737572_117737588	0.192573	GLI1..3.p2	BC083063|Pebp1|23980|phosphatidylethanolamine binding protein 1	NM_018858|Pebp1|23980|phosphatidylethanolamine binding protein 1	AK088212|Pebp1|23980|phosphatidylethanolamine binding protein 1	AK159842|Pebp1|23980|phosphatidylethanolamine binding protein 1	BC008169|Pebp1|23980|phosphatidylethanolamine binding protein 1	AK008037|Pebp1|23980|phosphatidylethanolamine binding protein 1	AK149815|Pebp1|23980|phosphatidylethanolamine binding protein 1
mm9_v1_chr8_+_35217674_35217675	0.192218	GLI1..3.p2	BC013497|Tmem66|67887|transmembrane protein 66
mm9_v1_chr4_+_155213834_155213912	0.191599	GLI1..3.p2	BC026438|Mxra8|74761|matrix-remodelling associated 8	AB040488|Mxra8|74761|matrix-remodelling associated 8	AK004732|Mxra8|74761|matrix-remodelling associated 8	AB052097|Mxra8|74761|matrix-remodelling associated 8
mm9_v1_chr15_-_81560309_81560370	0.19158	GLI1..3.p2	AK035571|Rangap1|19387|RAN GTPase activating protein 1	AK042930|Rangap1|19387|RAN GTPase activating protein 1	AK133905|Rangap1|19387|RAN GTPase activating protein 1	AK159525|Rangap1|19387|RAN GTPase activating protein 1	BC066213|Rangap1|19387|RAN GTPase activating protein 1	U08110|Rangap1|19387|RAN GTPase activating protein 1	NM_001146174|Rangap1|19387|RAN GTPase activating protein 1	NM_011241|Rangap1|19387|RAN GTPase activating protein 1
mm9_v1_chr7_-_4990023_4990047	0.190803	GLI1..3.p2	BC147237|Zfp784|654801|zinc finger protein 784	BC147238|Zfp784|654801|zinc finger protein 784	AK050452|Zfp784|654801|zinc finger protein 784	AK161791|Zfp784|654801|zinc finger protein 784	NM_001039532|Zfp784|654801|zinc finger protein 784
mm9_v1_chr3_+_10012576_10012609	0.190279	GLI1..3.p2	AK011551|Fabp5|16592|fatty acid binding protein 5, epidermal	AK166506|Fabp5|16592|fatty acid binding protein 5, epidermal	AK167389|Fabp5|16592|fatty acid binding protein 5, epidermal	AK008782|Fabp5|16592|fatty acid binding protein 5, epidermal	BC002008|Fabp5|16592|fatty acid binding protein 5, epidermal	BC053042|Fabp5|16592|fatty acid binding protein 5, epidermal	NM_010634|Fabp5|16592|fatty acid binding protein 5, epidermal	X70100|Fabp5|16592|fatty acid binding protein 5, epidermal	BC100543|Fabp5|16592|fatty acid binding protein 5, epidermal
mm9_v1_chr11_+_34214821_34214821	0.190236	GLI1..3.p2	BC072605|Fam196b|574403|family with sequence similarity 196, member B	NM_001025382|Fam196b|574403|family with sequence similarity 196, member B
mm9_v1_chr6_+_124959685_124959822	0.189856	GLI1..3.p2	AK086185|Zfp384|269800|zinc finger protein 384	BC064013|Zfp384|269800|zinc finger protein 384	NM_175557|Zfp384|269800|zinc finger protein 384
mm9_v1_chr5_+_31599923_31600004	0.189386	GLI1..3.p2	AK149377|Gckr|231103|glucokinase regulatory protein	BC012412|Gckr|231103|glucokinase regulatory protein	NM_144909|Gckr|231103|glucokinase regulatory protein
mm9_v1_chr7_+_13063673_13063734	0.188282	GLI1..3.p2	AK044645|Zfp606|67370|zinc finger protein 606	AK143200|Zfp606|67370|zinc finger protein 606	AK021179|Zfp606|67370|zinc finger protein 606	AK039817|Zfp606|67370|zinc finger protein 606	AK173278|Zfp606|67370|zinc finger protein 606	AK165095|Zfp606|67370|zinc finger protein 606	BC052747|Zfp606|67370|zinc finger protein 606
mm9_v1_chr1_+_180336011_180336163	0.188012	GLI1..3.p2	BC025062|Efcab2|68226|EF-hand calcium binding domain 2	NM_026626|Efcab2|68226|EF-hand calcium binding domain 2	AK018894|Efcab2|68226|EF-hand calcium binding domain 2	AK010880|Efcab2|68226|EF-hand calcium binding domain 2
mm9_v1_chr2_+_176266744_176266783	0.18713	GLI1..3.p2	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	NM_001099349|Gm14308|100043381|predicted gene 14308	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr4_-_141795288_141795317	0.185032	GLI1..3.p2	AK018497|9030409G11Rik|71529|RIKEN cDNA 9030409G11 gene	AK052809|9030409G11Rik|71529|RIKEN cDNA 9030409G11 gene	NM_001109685|9030409G11Rik|71529|RIKEN cDNA 9030409G11 gene
mm9_v1_chr6_-_8728094_8728149	0.185001	GLI1..3.p2	BC002030|Ica1|15893|islet cell autoantigen 1	AK192988|Ica1|15893|islet cell autoantigen 1	U26459|Ica1|15893|islet cell autoantigen 1
mm9_v1_chr11_+_102697609_102697609	0.184992	GLI1..3.p2	BC005568|Higd1b|75689|HIG1 domain family, member 1B	NM_080846|Higd1b|75689|HIG1 domain family, member 1B
mm9_v1_chr14_-_22806631_22806727	0.184984	GLI1..3.p2	AK032903|Zfp503|218820|zinc finger protein 503
mm9_v1_chr14_-_71026793_71026880	0.184111	GLI1..3.p2	AK155927|Epb4.9|13829|erythrocyte protein band 4.9	AK143840|Epb4.9|13829|erythrocyte protein band 4.9	AK165294|Epb4.9|13829|erythrocyte protein band 4.9	AK165204|Epb4.9|13829|erythrocyte protein band 4.9
mm9_v1_chr14_+_35124004_35124021	0.183911	GLI1..3.p2	AK075971|Glud1|14661|glutamate dehydrogenase 1	X57024|Glud1|14661|glutamate dehydrogenase 1	AK089152|Glud1|14661|glutamate dehydrogenase 1
mm9_v1_chr11_+_78156930_78157077	0.183903	GLI1..3.p2	AF030169|Unc119|22248|unc-119 homolog (C. elegans)	AK131955|Unc119|22248|unc-119 homolog (C. elegans)	BC001990|Unc119|22248|unc-119 homolog (C. elegans)	NM_011676|Unc119|22248|unc-119 homolog (C. elegans)
mm9_v1_chr1_-_88256028_88256034	0.182765	GLI1..3.p2	NM_010880|Ncl|17975|nucleolin
mm9_v1_chr17_-_59152686_59152744	0.182467	GLI1..3.p2	BC057657|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12	AK147867|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12	AK083846|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12	AK002641|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12	NM_026497|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm9_v1_chr16_-_90934985_90935126	0.182052	GLI1..3.p2	AK003413|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	BC019533|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	AK018510|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	AK045905|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	NM_026502|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene
mm9_v1_chr18_+_37571327_37571327	0.181512	GLI1..3.p2	NM_053135|Pcdhb10|93881|protocadherin beta 10
mm9_v1_chr11_-_54674080_54674223	0.181493	GLI1..3.p2	NM_029327|Lyrm7|75530|LYR motif containing 7	BC139403|Lyrm7|75530|LYR motif containing 7	BC139406|Lyrm7|75530|LYR motif containing 7
mm9_v1_chr1_-_82583298_82583393	0.181254	GLI1..3.p2	AK142553|Col4a4|12829|collagen, type IV, alpha 4	AF169388|Col4a4|12829|collagen, type IV, alpha 4
mm9_v1_chr5_+_24092553_24092628	0.181254	GLI1..3.p2	AK089404|Chpf2|100910|chondroitin polymerizing factor 2	AK138814|Chpf2|100910|chondroitin polymerizing factor 2	NM_133913|Chpf2|100910|chondroitin polymerizing factor 2
mm9_v1_chr11_+_115015491_115015512	0.180512	GLI1..3.p2	BC050757|Rab37|58222|RAB37, member of RAS oncogene family	NM_021411|Rab37|58222|RAB37, member of RAS oncogene family	AK040216|Rab37|58222|RAB37, member of RAS oncogene family	AK039716|Rab37|58222|RAB37, member of RAS oncogene family	AK050483|Rab37|58222|RAB37, member of RAS oncogene family	BC128020|Rab37|58222|RAB37, member of RAS oncogene family	AB232633|Rab37|58222|RAB37, member of RAS oncogene family	AF233582|Rab37|58222|RAB37, member of RAS oncogene family
mm9_v1_chr9_+_7502336_7502360	0.180346	GLI1..3.p2	AK020292|Mmp10|17384|matrix metallopeptidase 10	NM_019471|Mmp10|17384|matrix metallopeptidase 10	BC130027|Mmp10|17384|matrix metallopeptidase 10	Y13185|Mmp10|17384|matrix metallopeptidase 10
mm9_v1_chr15_-_81560257_81560281	0.179668	GLI1..3.p2	BC052862|Rangap1|19387|RAN GTPase activating protein 1	AK088768|Rangap1|19387|RAN GTPase activating protein 1	AK145459|Rangap1|19387|RAN GTPase activating protein 1	AK129452|Rangap1|19387|RAN GTPase activating protein 1
mm9_v1_chr17_+_25024425_25024425	0.179235	GLI1..3.p2	AF403038|Spsb3|79043|splA/ryanodine receptor domain and SOCS box containing 3	AK009325|Spsb3|79043|splA/ryanodine receptor domain and SOCS box containing 3	NM_027141|Spsb3|79043|splA/ryanodine receptor domain and SOCS box containing 3
mm9_v1_chr4_+_101390472_101390526	0.178997	GLI1..3.p2	AK155891|Lepr|16847|leptin receptor	U58861|Lepr|16847|leptin receptor	U58862|Lepr|16847|leptin receptor	U58863|Lepr|16847|leptin receptor	AB519175|Lepr|16847|leptin receptor	AB519174|Lepr|16847|leptin receptor	AK140785|Lepr|16847|leptin receptor	U42467|Lepr|16847|leptin receptor	U46135|Lepr|16847|leptin receptor	AB519177|Lepr|16847|leptin receptor	AB519178|Lepr|16847|leptin receptor	AB519176|Lepr|16847|leptin receptor	BC082551|Lepr|16847|leptin receptor
mm9_v1_chr15_+_84062273_84062503	0.178466	GLI1..3.p2	BC158113|Parvb|170736|parvin, beta	BC138747|Parvb|170736|parvin, beta	BC138748|Parvb|170736|parvin, beta	NM_133167|Parvb|170736|parvin, beta	AK143614|Parvb|170736|parvin, beta	AF237770|Parvb|170736|parvin, beta	AK147758|Parvb|170736|parvin, beta
mm9_v1_chr8_+_35217633_35217673	0.178386	GLI1..3.p2	BC022616|Tmem66|67887|transmembrane protein 66	AK093942|Tmem66|67887|transmembrane protein 66
mm9_v1_chr15_+_38837818_38837834	0.178087	GLI1..3.p2	NM_001162494|Fzd6|14368|frizzled homolog 6 (Drosophila)
mm9_v1_chr2_+_177249446_177249462	0.177874	GLI1..3.p2	BC124559|Gm14420|628308|predicted gene 14420	NM_001177568|Gm14420|628308|predicted gene 14420
mm9_v1_chr3_-_138738152_138738164	0.177644	GLI1..3.p2	AK158465|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	NM_001040690|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	NM_145544|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	AK172052|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1
mm9_v1_chr5_+_114830841_114830887	0.177567	GLI1..3.p2	BC023956|Ube3b|117146|ubiquitin protein ligase E3B
mm9_v1_chr1_-_163806710_163806814	0.177359	GLI1..3.p2	BC138379|AI848100|226551|expressed sequence AI848100	AK171856|AI848100|226551|expressed sequence AI848100	NM_172645|AI848100|226551|expressed sequence AI848100
mm9_v1_chr17_-_15178386_15178522	0.177051	GLI1..3.p2	AK006370|Tcte3|21647|t-complex-associated testis expressed 3	AY172988|Tcte3|21647|t-complex-associated testis expressed 3	BC061136|Tcte3|21647|t-complex-associated testis expressed 3	BC048739|Tcte3|21647|t-complex-associated testis expressed 3	U21673|Tcte3|21647|t-complex-associated testis expressed 3	U21674|Tcte3|21647|t-complex-associated testis expressed 3	BC018245|Tcte3|21647|t-complex-associated testis expressed 3	BC131981|Tcte3|21647|t-complex-associated testis expressed 3	BC131983|Tcte3|21647|t-complex-associated testis expressed 3	NM_001123367|Gm3448|100041639|predicted gene 3448	NM_001123368|Gm3417|100041586|predicted gene 3417	NM_011560|Tcte3|21647|t-complex-associated testis expressed 3	NM_198104|Tcte3|21647|t-complex-associated testis expressed 3
mm9_v1_chr3_+_87946259_87946350	0.176004	GLI1..3.p2	AK155778|Mef2d|17261|myocyte enhancer factor 2D	NM_133665|Mef2d|17261|myocyte enhancer factor 2D	AK141270|Mef2d|17261|myocyte enhancer factor 2D	BC011070|Mef2d|17261|myocyte enhancer factor 2D
mm9_v1_chr4_+_89354888_89354955	0.175925	GLI1..3.p2	AF542047|Dmrta1|242523|doublesex and mab-3 related transcription factor like family A1	NM_175647|Dmrta1|242523|doublesex and mab-3 related transcription factor like family A1	BC137613|Dmrta1|242523|doublesex and mab-3 related transcription factor like family A1
mm9_v1_chr5_-_92682184_92682184	0.175761	GLI1..3.p2	AF023458|Ppef2|19023|protein phosphatase, EF hand calcium-binding domain 2	NM_011148|Ppef2|19023|protein phosphatase, EF hand calcium-binding domain 2
mm9_v1_chr7_+_6173879_6173879	0.175679	GLI1..3.p2	AK139659|Zscan5b|170734|zinc finger and SCAN domain containing 5B	NM_133204|Zscan5b|170734|zinc finger and SCAN domain containing 5B
mm9_v1_chr2_-_176421012_176421051	0.175479	GLI1..3.p2	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001099349|Gm14308|100043381|predicted gene 14308	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr2_-_157854168_157854171	0.175021	GLI1..3.p2	AK128940|Tti1|75425|Tel2 interacting protein 1 homolog (S. pombe)
mm9_v1_chr9_+_79914751_79914905	0.174904	GLI1..3.p2	AK129219|Senp6|215351|SUMO/sentrin specific peptidase 6	BC061480|Senp6|215351|SUMO/sentrin specific peptidase 6	BC052718|Senp6|215351|SUMO/sentrin specific peptidase 6
mm9_v1_chr12_-_70891641_70891693	0.174374	GLI1..3.p2	BC115909|Cdkl1|71091|cyclin-dependent kinase-like 1 (CDC2-related kinase)	BC118055|Cdkl1|71091|cyclin-dependent kinase-like 1 (CDC2-related kinase)	AK016781|Cdkl1|71091|cyclin-dependent kinase-like 1 (CDC2-related kinase)	NM_183294|Cdkl1|71091|cyclin-dependent kinase-like 1 (CDC2-related kinase)
mm9_v1_chr11_+_74644411_74644428	0.174295	GLI1..3.p2	NM_010813|Mnt|17428|max binding protein	U77356|Mnt|17428|max binding protein
mm9_v1_chr8_+_97501008_97501008	0.174173	GLI1..3.p2	AF166382|Gpr56|14766|G protein-coupled receptor 56	NM_001198894|Gpr56|14766|G protein-coupled receptor 56
mm9_v1_chr16_+_38362258_38362337	0.1733	GLI1..3.p2	NM_001081984|Popdc2|64082|popeye domain containing 2	BC064005|Popdc2|64082|popeye domain containing 2	NM_022318|Popdc2|64082|popeye domain containing 2	AK084713|Popdc2|64082|popeye domain containing 2	AF204175|Popdc2|64082|popeye domain containing 2
mm9_v1_chrX_+_150158113_150158178	0.172437	GLI1..3.p2	AK008724|2210013O21Rik|70123|RIKEN cDNA 2210013O21 gene
mm9_v1_chr13_+_113254277_113254381	0.172378	GLI1..3.p2	NM_010560|Il6st|16195|interleukin 6 signal transducer	BC058679|Il6st|16195|interleukin 6 signal transducer	AK170020|Il6st|16195|interleukin 6 signal transducer	BC020454|Il6st|16195|interleukin 6 signal transducer
mm9_v1_chr12_-_76278318_76278318	0.172368	GLI1..3.p2	AK032438|Kcnh5|238271|potassium voltage-gated channel, subfamily H (eag-related), member 5	NM_172805|Kcnh5|238271|potassium voltage-gated channel, subfamily H (eag-related), member 5
mm9_v1_chr10_-_79076744_79076769	0.172315	GLI1..3.p2	BC089008|C2cd4c|237397|C2 calcium-dependent domain containing 4C	NM_198614|C2cd4c|237397|C2 calcium-dependent domain containing 4C	AK029946|C2cd4c|237397|C2 calcium-dependent domain containing 4C	NM_001168624|C2cd4c|237397|C2 calcium-dependent domain containing 4C
mm9_v1_chr11_+_113510808_113510853	0.172288	GLI1..3.p2	AK034636|Cog1|16834|component of oligomeric golgi complex 1	AK162971|Cog1|16834|component of oligomeric golgi complex 1	NM_013581|Cog1|16834|component of oligomeric golgi complex 1	AK159497|Cog1|16834|component of oligomeric golgi complex 1	AK171574|Cog1|16834|component of oligomeric golgi complex 1	AK152464|Cog1|16834|component of oligomeric golgi complex 1
mm9_v1_chr12_+_110693193_110693229	0.171335	GLI1..3.p2	EU434914|Dlk1|13386|delta-like 1 homolog (Drosophila)	EU434916|Dlk1|13386|delta-like 1 homolog (Drosophila)
mm9_v1_chr13_+_56623832_56623890	0.169601	GLI1..3.p2	AK079800|Fbxl21|213311|F-box and leucine-rich repeat protein 21	AK035290|Fbxl21|213311|F-box and leucine-rich repeat protein 21	AK085598|Fbxl21|213311|F-box and leucine-rich repeat protein 21	NM_178674|Fbxl21|213311|F-box and leucine-rich repeat protein 21	AK046196|Fbxl21|213311|F-box and leucine-rich repeat protein 21	BC138940|Fbxl21|213311|F-box and leucine-rich repeat protein 21	BC138941|Fbxl21|213311|F-box and leucine-rich repeat protein 21
mm9_v1_chr8_-_122129081_122129139	0.169314	GLI1..3.p2	BC058383|Taf1c|21341|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C	AK156718|Taf1c|21341|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C	AK030522|Taf1c|21341|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C	AK052250|Taf1c|21341|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C	BC051944|Taf1c|21341|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C	AK154846|Taf1c|21341|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C	AK087534|Taf1c|21341|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C	NM_021441|Taf1c|21341|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C
mm9_v1_chr15_-_76755841_76755877	0.168338	GLI1..3.p2	BC055686|Zfp647|239546|zinc finger protein 647	AK031543|Zfp647|239546|zinc finger protein 647	NM_001168276|Zfp647|239546|zinc finger protein 647	NM_172817|Zfp647|239546|zinc finger protein 647
mm9_v1_chr9_+_56785271_56785306	0.167346	GLI1..3.p2	AK004456|Imp3|102462|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)	BC009145|Imp3|102462|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)	NM_133976|Imp3|102462|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)
mm9_v1_chr17_+_53618611_53618848	0.16702	GLI1..3.p2	AK036011|Rab5a|271457|RAB5A, member RAS oncogene family	BC004842|Rab5a|271457|RAB5A, member RAS oncogene family	AK010495|Rab5a|271457|RAB5A, member RAS oncogene family	AK150405|Rab5a|271457|RAB5A, member RAS oncogene family	AK002631|Rab5a|271457|RAB5A, member RAS oncogene family	AK150296|Rab5a|271457|RAB5A, member RAS oncogene family	AK151066|Rab5a|271457|RAB5A, member RAS oncogene family	AK153131|Rab5a|271457|RAB5A, member RAS oncogene family	AK159706|Rab5a|271457|RAB5A, member RAS oncogene family	AK150346|Rab5a|271457|RAB5A, member RAS oncogene family	BC034370|Rab5a|271457|RAB5A, member RAS oncogene family	AK008198|Rab5a|271457|RAB5A, member RAS oncogene family
mm9_v1_chr1_+_57434454_57434500	0.166621	GLI1..3.p2	NM_028546|1700066M21Rik|73467|RIKEN cDNA 1700066M21 gene
mm9_v1_chr13_+_54723144_54723248	0.165064	GLI1..3.p2	NM_178397|Faf2|76577|Fas associated factor family member 2	AK170111|Faf2|76577|Fas associated factor family member 2	AK171922|Faf2|76577|Fas associated factor family member 2	AK051724|Faf2|76577|Fas associated factor family member 2	BC046817|Faf2|76577|Fas associated factor family member 2	AK148529|Faf2|76577|Fas associated factor family member 2	AK151617|Faf2|76577|Fas associated factor family member 2	BC048767|Faf2|76577|Fas associated factor family member 2	AK122394|Faf2|76577|Fas associated factor family member 2
mm9_v1_chr4_+_154624074_154624074	0.164901	GLI1..3.p2	AK011291|2610002J02Rik|67513|RIKEN cDNA 2610002J02 gene	NM_001190445|2610002J02Rik|67513|RIKEN cDNA 2610002J02 gene
mm9_v1_chr13_-_58503862_58503886	0.16284	GLI1..3.p2	AK167600|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K	AK051313|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K	AK128891|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K	AK160887|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K	AK166656|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K	AK011428|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K	NM_025279|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K
mm9_v1_chrX_+_146981989_146982012	0.162639	GLI1..3.p2	AK002642|Alas2|11656|aminolevulinic acid synthase 2, erythroid	AK165262|Alas2|11656|aminolevulinic acid synthase 2, erythroid	M63244|Alas2|11656|aminolevulinic acid synthase 2, erythroid	AK165257|Alas2|11656|aminolevulinic acid synthase 2, erythroid	AK172094|Alas2|11656|aminolevulinic acid synthase 2, erythroid	M15268|Alas2|11656|aminolevulinic acid synthase 2, erythroid	BC150870|Alas2|11656|aminolevulinic acid synthase 2, erythroid
mm9_v1_chr14_-_70577478_70577492	0.162177	GLI1..3.p2	BC024556|Pdlim2|213019|PDZ and LIM domain 2	NM_145978|Pdlim2|213019|PDZ and LIM domain 2
mm9_v1_chr1_+_36569141_36569293	0.162057	GLI1..3.p2	BC080275|Cnnm3|94218|cyclin M3
mm9_v1_chr18_-_64648748_64648758	0.161382	GLI1..3.p2	AK159652|Fech|14151|ferrochelatase
mm9_v1_chr10_-_75130331_75130381	0.160598	GLI1..3.p2	AK169961|Cabin1|104248|calcineurin binding protein 1	AK171567|Cabin1|104248|calcineurin binding protein 1
mm9_v1_chr5_+_122298977_122299040	0.160524	GLI1..3.p2	AK039192|Fam109a|231717|family with sequence similarity 109, member A	AK033618|Fam109a|231717|family with sequence similarity 109, member A	NM_175474|Fam109a|231717|family with sequence similarity 109, member A
mm9_v1_chr9_-_114843103_114843123	0.160153	GLI1..3.p2	NM_175380|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr5_+_121902672_121902717	0.159491	GLI1..3.p2	AK015103|Tmem116|77462|transmembrane protein 116	AK021099|Tmem116|77462|transmembrane protein 116	NM_029912|Tmem116|77462|transmembrane protein 116
mm9_v1_chr4_+_33397279_33397404	0.159168	GLI1..3.p2	AK151463|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	NM_011884|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK150497|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK160007|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK002922|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK079488|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK142016|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK160706|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	BC043657|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK169305|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AF034568|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AF025653|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase
mm9_v1_chr2_-_26766098_26766111	0.158802	GLI1..3.p2	AK161053|Med22|20933|mediator complex subunit 22	AK166250|Med22|20933|mediator complex subunit 22
mm9_v1_chr12_+_82046447_82046492	0.158544	GLI1..3.p2	NM_001079694|Srsf5|20384|serine/arginine-rich splicing factor 5	NM_001079695|Srsf5|20384|serine/arginine-rich splicing factor 5	NM_009159|Srsf5|20384|serine/arginine-rich splicing factor 5
mm9_v1_chr6_-_48522636_48522644	0.158469	GLI1..3.p2	BC015275|Rarres2|71660|retinoic acid receptor responder (tazarotene induced) 2
mm9_v1_chr11_+_53333270_53333474	0.15832	GLI1..3.p2	BC059248|Sept8|20362|septin 8	NM_033144|Sept8|20362|septin 8	AB093215|Sept8|20362|septin 8	AK144178|Sept8|20362|septin 8	BC049819|Sept8|20362|septin 8	BC037707|Sept8|20362|septin 8
mm9_v1_chr7_-_135090238_135090238	0.157794	GLI1..3.p2	NM_001081374|Prss36|77613|protease, serine, 36
mm9_v1_chr2_+_172266042_172266209	0.157	GLI1..3.p2	AK053258|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK010321|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK077823|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	NM_025542|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK009901|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC049072|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK167287|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK028792|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC004803|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK219307|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK209674|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK169588|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK170141|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK153121|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC096692|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC116442|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC116443|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC127166|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene
mm9_v1_chr2_+_181115939_181116074	0.15676	GLI1..3.p2	AF115339|Lime1|72699|Lck interacting transmembrane adaptor 1	NM_023684|Lime1|72699|Lck interacting transmembrane adaptor 1	AK172632|Lime1|72699|Lck interacting transmembrane adaptor 1
mm9_v1_chr8_-_67212325_67212399	0.155111	GLI1..3.p2	AK146684|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK169017|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK045059|Sc4mol|66234|sterol-C4-methyl oxidase-like	BC006802|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK005441|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK005090|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK151135|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK154682|Sc4mol|66234|sterol-C4-methyl oxidase-like	NM_025436|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK010570|Sc4mol|66234|sterol-C4-methyl oxidase-like
mm9_v1_chr11_-_97011324_97011437	0.154871	GLI1..3.p2	AK014173|Tbkbp1|73174|TBK1 binding protein 1
mm9_v1_chr17_-_15115646_15115775	0.154254	GLI1..3.p2	AK006370|Tcte3|21647|t-complex-associated testis expressed 3	AY172988|Tcte3|21647|t-complex-associated testis expressed 3	BC061136|Tcte3|21647|t-complex-associated testis expressed 3	BC048739|Tcte3|21647|t-complex-associated testis expressed 3	U21673|Tcte3|21647|t-complex-associated testis expressed 3	U21674|Tcte3|21647|t-complex-associated testis expressed 3	BC018245|Tcte3|21647|t-complex-associated testis expressed 3	BC131981|Tcte3|21647|t-complex-associated testis expressed 3	BC131983|Tcte3|21647|t-complex-associated testis expressed 3	NM_001123367|Gm3448|100041639|predicted gene 3448	NM_001123368|Gm3417|100041586|predicted gene 3417
mm9_v1_chr8_+_85913750_85913789	0.153062	GLI1..3.p2	AK019534|Clgn|12745|calmegin	AK034525|Clgn|12745|calmegin	D14117|Clgn|12745|calmegin	D86323|Clgn|12745|calmegin	U08373|Clgn|12745|calmegin	BC050767|Clgn|12745|calmegin	NM_009904|Clgn|12745|calmegin
mm9_v1_chr7_+_133903186_133903314	0.152376	GLI1..3.p2	S58470|Mapk3|26417|mitogen-activated protein kinase 3	BC013754|Mapk3|26417|mitogen-activated protein kinase 3
mm9_v1_chr12_+_117316195_117316297	0.152273	GLI1..3.p2	AK038743|Vipr2|22355|vasoactive intestinal peptide receptor 2	NM_009511|Vipr2|22355|vasoactive intestinal peptide receptor 2	AK142357|Vipr2|22355|vasoactive intestinal peptide receptor 2	D28132|Vipr2|22355|vasoactive intestinal peptide receptor 2	BC138572|Vipr2|22355|vasoactive intestinal peptide receptor 2
mm9_v1_chr11_-_23397858_23397918	0.152046	GLI1..3.p2	BC064012|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	BC055873|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)
mm9_v1_chr2_+_152561983_152562076	0.151905	GLI1..3.p2	M31885|Id1|15901|inhibitor of DNA binding 1	AK008264|Id1|15901|inhibitor of DNA binding 1	BC025073|Id1|15901|inhibitor of DNA binding 1	NM_010495|Id1|15901|inhibitor of DNA binding 1	U43884|Id1|15901|inhibitor of DNA binding 1	AB221668|Id1|15901|inhibitor of DNA binding 1	CT010243|Id1|15901|inhibitor of DNA binding 1
mm9_v1_chr11_-_102680467_102680523	0.150219	GLI1..3.p2	BC050840|Gjc1|14615|gap junction protein, gamma 1	NM_001159382|Gjc1|14615|gap junction protein, gamma 1	BC023153|Gjc1|14615|gap junction protein, gamma 1	AY390397|Gjc1|14615|gap junction protein, gamma 1
mm9_v1_chr6_-_130336891_130336991	0.150205	GLI1..3.p2	AY078436|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	NM_016659|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	AF419250|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	AF444273|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1
mm9_v1_chr14_+_70009282_70009284	0.149802	GLI1..3.p2	NM_033325|Loxl2|94352|lysyl oxidase-like 2	AK045019|Loxl2|94352|lysyl oxidase-like 2
mm9_v1_chr12_+_82046496_82046547	0.147389	GLI1..3.p2	AK002267|Srsf5|20384|serine/arginine-rich splicing factor 5	AK005552|Srsf5|20384|serine/arginine-rich splicing factor 5	AK007729|Srsf5|20384|serine/arginine-rich splicing factor 5	AK142009|Srsf5|20384|serine/arginine-rich splicing factor 5	AK146624|Srsf5|20384|serine/arginine-rich splicing factor 5	AK078065|Srsf5|20384|serine/arginine-rich splicing factor 5	BC082593|Srsf5|20384|serine/arginine-rich splicing factor 5	BC085267|Srsf5|20384|serine/arginine-rich splicing factor 5	BC038624|Srsf5|20384|serine/arginine-rich splicing factor 5
mm9_v1_chr7_-_105326751_105326764	0.147346	GLI1..3.p2	AK155179|Capn5|12337|calpain 5
mm9_v1_chr18_+_53624169_53624199	0.146917	GLI1..3.p2	BC139295|Prdm6|225518|PR domain containing 6	AK133910|Prdm6|225518|PR domain containing 6	NM_001033281|Prdm6|225518|PR domain containing 6
mm9_v1_chr2_+_175737015_175737088	0.145254	GLI1..3.p2	AK039408|Gm4724|100043915|predicted gene 4724	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	NM_001099349|Gm14308|100043381|predicted gene 14308	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr4_+_151852250_151852286	0.143947	GLI1..3.p2	AF537131|Nphp4|260305|nephronophthisis 4 (juvenile) homolog (human)	AK084539|Nphp4|260305|nephronophthisis 4 (juvenile) homolog (human)	NM_153424|Nphp4|260305|nephronophthisis 4 (juvenile) homolog (human)	AK016223|Nphp4|260305|nephronophthisis 4 (juvenile) homolog (human)
mm9_v1_chr14_+_21167481_21167541	0.143938	GLI1..3.p2	AK077495|Fam149b|105428|family with sequence similarity 149, member B	BC057907|Fam149b|105428|family with sequence similarity 149, member B	BC069846|Fam149b|105428|family with sequence similarity 149, member B	BC025183|Fam149b|105428|family with sequence similarity 149, member B	AK037808|Fam149b|105428|family with sequence similarity 149, member B	BC058650|Fam149b|105428|family with sequence similarity 149, member B	BC059221|Fam149b|105428|family with sequence similarity 149, member B
mm9_v1_chr2_+_175639464_175639537	0.143922	GLI1..3.p2	AK039408|Gm4724|100043915|predicted gene 4724	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	NM_001099349|Gm14308|100043381|predicted gene 14308	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr16_+_92058498_92058582	0.14385	GLI1..3.p2	AK165590|Mrps6|121022|mitochondrial ribosomal protein S6	AB049943|Mrps6|121022|mitochondrial ribosomal protein S6	AY061856|Mrps6|121022|mitochondrial ribosomal protein S6	AK144718|Slc5a3|53881|solute carrier family 5 (inositol transporters), member 3	AK166374|Mrps6|121022|mitochondrial ribosomal protein S6	AK167304|Mrps6|121022|mitochondrial ribosomal protein S6	NM_017391|Slc5a3|53881|solute carrier family 5 (inositol transporters), member 3	AK167316|Mrps6|121022|mitochondrial ribosomal protein S6	BC027271|Mrps6|121022|mitochondrial ribosomal protein S6	NM_080456|Mrps6|121022|mitochondrial ribosomal protein S6
mm9_v1_chr17_+_35272688_35272836	0.143188	GLI1..3.p2	AK164266|Bag6|224727|BCL2-associated athanogene 6	AK170134|Bag6|224727|BCL2-associated athanogene 6
mm9_v1_chr2_+_175964428_175964488	0.143179	GLI1..3.p2	AK039408|Gm4724|100043915|predicted gene 4724	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001099349|Gm14308|100043381|predicted gene 14308	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr4_+_154624080_154624114	0.141649	GLI1..3.p2	AK003268|2610002J02Rik|67513|RIKEN cDNA 2610002J02 gene	BC117034|2610002J02Rik|67513|RIKEN cDNA 2610002J02 gene	BC117036|2610002J02Rik|67513|RIKEN cDNA 2610002J02 gene	AK144436|2610002J02Rik|67513|RIKEN cDNA 2610002J02 gene	BC096420|2610002J02Rik|67513|RIKEN cDNA 2610002J02 gene
mm9_v1_chr10_+_83185609_83185706	0.140987	GLI1..3.p2	BC048550|1500009L16Rik|69784|RIKEN cDNA 1500009L16 gene	NM_001145198|1500009L16Rik|69784|RIKEN cDNA 1500009L16 gene	AK012407|1500009L16Rik|69784|RIKEN cDNA 1500009L16 gene	AK005183|1500009L16Rik|69784|RIKEN cDNA 1500009L16 gene
mm9_v1_chr7_+_148414663_148414708	0.140897	GLI1..3.p2	NM_001081118|Phrf1|101471|PHD and ring finger domains 1
mm9_v1_chr13_+_32893989_32894122	0.139473	GLI1..3.p2	AB056151|Wrnip1|78903|Werner helicase interacting protein 1
mm9_v1_chr7_-_107475377_107475426	0.139169	GLI1..3.p2	
mm9_v1_chr12_+_88367442_88367513	0.139152	GLI1..3.p2	AK034410|Tmem63c|217733|transmembrane protein 63c	AK043536|Tmem63c|217733|transmembrane protein 63c	BC056936|Tmem63c|217733|transmembrane protein 63c	BC057088|Tmem63c|217733|transmembrane protein 63c	NM_172583|Tmem63c|217733|transmembrane protein 63c
mm9_v1_chr12_-_36944788_36944804	0.139051	GLI1..3.p2	AK007140|1700108M19Rik|71156|RIKEN cDNA 1700108M19 gene	NM_027699|1700108M19Rik|71156|RIKEN cDNA 1700108M19 gene	AK077182|1700108M19Rik|71156|RIKEN cDNA 1700108M19 gene
mm9_v1_chr8_-_114154217_114154279	0.138849	GLI1..3.p2	BC039155|Ldhd|52815|lactate dehydrogenase D	AY092768|Ldhd|52815|lactate dehydrogenase D	BC055443|Ldhd|52815|lactate dehydrogenase D	NM_027570|Ldhd|52815|lactate dehydrogenase D	AK029820|Ldhd|52815|lactate dehydrogenase D	AK014649|Ldhd|52815|lactate dehydrogenase D
mm9_v1_chr1_+_129765349_129765386	0.138477	GLI1..3.p2	NM_178690|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK172881|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK035603|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK076399|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK080432|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK134604|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK164523|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK170768|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	BC046297|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK076244|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1
mm9_v1_chr19_-_34329804_34329828	0.137473	GLI1..3.p2	X13297|Acta2|11475|actin, alpha 2, smooth muscle, aorta	BC064800|Acta2|11475|actin, alpha 2, smooth muscle, aorta	AK017374|Acta2|11475|actin, alpha 2, smooth muscle, aorta	AK156331|Acta2|11475|actin, alpha 2, smooth muscle, aorta	NM_007392|Acta2|11475|actin, alpha 2, smooth muscle, aorta
mm9_v1_chr15_-_27955602_27955621	0.136694	GLI1..3.p2	NM_001081302|Trio|223435|triple functional domain (PTPRF interacting)
mm9_v1_chr15_+_25914120_25914196	0.136676	GLI1..3.p2	AK031232|Zfp622|52521|zinc finger protein 622	AK170489|Zfp622|52521|zinc finger protein 622	NM_144523|Zfp622|52521|zinc finger protein 622	AK149106|Zfp622|52521|zinc finger protein 622	AK154951|Zfp622|52521|zinc finger protein 622
mm9_v1_chr7_-_36539369_36539472	0.135218	GLI1..3.p2	BC059897|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK045758|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031722|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	BC050065|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK033395|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AF538322|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031345|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK034217|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	NM_178704|Dpy19l3|233115|dpy-19-like 3 (C. elegans)
mm9_v1_chr8_-_114267646_114267779	0.132791	GLI1..3.p2	U48853|Bcar1|12927|breast cancer anti-estrogen resistance 1	BC057578|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK167717|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK090315|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK145863|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK167516|Bcar1|12927|breast cancer anti-estrogen resistance 1	NM_009954|Bcar1|12927|breast cancer anti-estrogen resistance 1
mm9_v1_chr3_+_121670737_121670783	0.132325	GLI1..3.p2	AK044979|Arhgap29|214137|Rho GTPase activating protein 29	AK043637|Arhgap29|214137|Rho GTPase activating protein 29	BC052858|Arhgap29|214137|Rho GTPase activating protein 29
mm9_v1_chr18_-_64648604_64648678	0.132297	GLI1..3.p2	AK084843|Fech|14151|ferrochelatase	BC096770|Fech|14151|ferrochelatase
mm9_v1_chr17_+_35704429_35704481	0.132071	GLI1..3.p2	AK037046|2300002M23Rik|69542|RIKEN cDNA 2300002M23 gene	BC107265|2300002M23Rik|69542|RIKEN cDNA 2300002M23 gene	BC107266|2300002M23Rik|69542|RIKEN cDNA 2300002M23 gene	NM_175148|2300002M23Rik|69542|RIKEN cDNA 2300002M23 gene	AK009013|2300002M23Rik|69542|RIKEN cDNA 2300002M23 gene
mm9_v1_chr2_+_4897196_4897196	0.131871	GLI1..3.p2	EF529510|Ucma|68527|upper zone of growth plate and cartilage matrix associated
mm9_v1_chr6_+_55326288_55326358	0.131782	GLI1..3.p2	AK133683|Ghrhr|14602|growth hormone releasing hormone receptor	NM_001003685|Ghrhr|14602|growth hormone releasing hormone receptor	AK030504|Ghrhr|14602|growth hormone releasing hormone receptor	L07379|Ghrhr|14602|growth hormone releasing hormone receptor	BC120748|Ghrhr|14602|growth hormone releasing hormone receptor	BC120774|Ghrhr|14602|growth hormone releasing hormone receptor	BC144892|Ghrhr|14602|growth hormone releasing hormone receptor
mm9_v1_chr7_-_145589409_145589421	0.130814	GLI1..3.p2	AK017700|Tcerg1l|70571|transcription elongation regulator 1-like	NM_183289|Tcerg1l|70571|transcription elongation regulator 1-like
mm9_v1_chr14_-_71041964_71042074	0.129972	GLI1..3.p2	AK082858|Fgf17|14171|fibroblast growth factor 17	BC119033|Fgf17|14171|fibroblast growth factor 17	BC144776|Fgf17|14171|fibroblast growth factor 17	AK077555|Fgf17|14171|fibroblast growth factor 17	NM_008004|Fgf17|14171|fibroblast growth factor 17
mm9_v1_chr17_-_35804498_35804538	0.129912	GLI1..3.p2	AK155386|Vars2|68915|valyl-tRNA synthetase 2, mitochondrial (putative)	AK129008|Vars2|68915|valyl-tRNA synthetase 2, mitochondrial (putative)	NM_175137|Vars2|68915|valyl-tRNA synthetase 2, mitochondrial (putative)
mm9_v1_chr10_+_22364816_22364969	0.128479	GLI1..3.p2	AJ549317|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	NM_178934|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	AK143263|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	AK028970|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	BC096454|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	AK031659|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	AY230881|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	AK035972|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	BC116315|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	BC116314|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	BC138316|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	BC138317|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12
mm9_v1_chr2_-_175261262_175261335	0.128134	GLI1..3.p2	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001099349|Gm14308|100043381|predicted gene 14308	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK039408|Gm4724|100043915|predicted gene 4724
mm9_v1_chr16_+_20517042_20517258	0.127834	GLI1..3.p2	U41285|Dvl3|13544|dishevelled 3, dsh homolog (Drosophila)	AK052151|Dvl3|13544|dishevelled 3, dsh homolog (Drosophila)	NM_007889|Dvl3|13544|dishevelled 3, dsh homolog (Drosophila)	BC033414|Dvl3|13544|dishevelled 3, dsh homolog (Drosophila)
mm9_v1_chr7_-_86275845_86275903	0.12669	GLI1..3.p2	AY269788|Hapln3|67666|hyaluronan and proteoglycan link protein 3	BC110474|Hapln3|67666|hyaluronan and proteoglycan link protein 3	AK017865|Hapln3|67666|hyaluronan and proteoglycan link protein 3	AK136956|Hapln3|67666|hyaluronan and proteoglycan link protein 3	AK016123|Hapln3|67666|hyaluronan and proteoglycan link protein 3	AY262757|Hapln3|67666|hyaluronan and proteoglycan link protein 3	NM_178255|Hapln3|67666|hyaluronan and proteoglycan link protein 3
mm9_v1_chr9_+_107199019_107199063	0.126172	GLI1..3.p2	AK077338|Cish|12700|cytokine inducible SH2-containing protein	NM_009895|Cish|12700|cytokine inducible SH2-containing protein
mm9_v1_chr5_-_115750940_115750978	0.126137	GLI1..3.p2	AK002522|Dynll1|56455|dynein light chain LC8-type 1	AK010614|Dynll1|56455|dynein light chain LC8-type 1	AK010685|Dynll1|56455|dynein light chain LC8-type 1	AK013721|Dynll1|56455|dynein light chain LC8-type 1	AK013725|Dynll1|56455|dynein light chain LC8-type 1	AK082923|Dynll1|56455|dynein light chain LC8-type 1	AK147977|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr11_+_102963056_102963087	0.125296	GLI1..3.p2	BC048371|Acbd4|67131|acyl-Coenzyme A binding domain containing 4
mm9_v1_chr17_-_26063534_26063588	0.124321	GLI1..3.p2	
mm9_v1_chr16_-_4879787_4879850	0.124015	GLI1..3.p2	BC013706|Fam100a|207740|family with sequence similarity 100, member A	BC064081|Fam100a|207740|family with sequence similarity 100, member A	BC056472|Fam100a|207740|family with sequence similarity 100, member A	AK005316|Fam100a|207740|family with sequence similarity 100, member A	NM_145359|Fam100a|207740|family with sequence similarity 100, member A
mm9_v1_chr1_+_74648028_74648212	0.123791	GLI1..3.p2	NM_175031|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	AK029842|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	BC043103|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	AK007188|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	BC049721|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	BC058698|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)
mm9_v1_chr10_+_69707847_69707906	0.123453	GLI1..3.p2	AK004599|Slc16a9|66859|solute carrier family 16 (monocarboxylic acid transporters), member 9
mm9_v1_chr14_+_26802490_26802490	0.122921	GLI1..3.p2	BC055782|Duxbl|278672|double homeobox B-like	NM_001177538|Gm10394|100039227|predicted gene 10394	NM_001177539|Gm10391|100039293|predicted gene 10391	NM_183389|Duxbl|278672|double homeobox B-like
mm9_v1_chr1_+_154246959_154247050	0.121598	GLI1..3.p2	AK085716|Glt25d2|269132|glycosyltransferase 25 domain containing 2	AK052838|Glt25d2|269132|glycosyltransferase 25 domain containing 2	NM_177756|Glt25d2|269132|glycosyltransferase 25 domain containing 2	AK134084|Glt25d2|269132|glycosyltransferase 25 domain containing 2	BC068118|Glt25d2|269132|glycosyltransferase 25 domain containing 2
mm9_v1_chr7_-_19406936_19406955	0.121203	GLI1..3.p2	BC100345|Psg17|26437|pregnancy specific glycoprotein 17	NM_007677|Psg17|26437|pregnancy specific glycoprotein 17	M83344|Psg17|26437|pregnancy specific glycoprotein 17
mm9_v1_chr1_-_80210403_80210518	0.12088	GLI1..3.p2	BC150872|Fam124b|241128|family with sequence similarity 124, member B	AK043867|Fam124b|241128|family with sequence similarity 124, member B	NM_173425|Fam124b|241128|family with sequence similarity 124, member B
mm9_v1_chr14_+_21167383_21167391	0.120578	GLI1..3.p2	AK031973|Fam149b|105428|family with sequence similarity 149, member B	NM_001177633|Fam149b|105428|family with sequence similarity 149, member B	NM_172379|Fam149b|105428|family with sequence similarity 149, member B
mm9_v1_chr10_-_128241425_128241425	0.118929	GLI1..3.p2	BC037624|1110012D08Rik|73827|RIKEN cDNA 1110012D08 gene	NM_178066|1110012D08Rik|73827|RIKEN cDNA 1110012D08 gene
mm9_v1_chr17_-_35840931_35841083	0.117429	GLI1..3.p2	L57509|Ddr1|12305|discoidin domain receptor family, member 1	AK143088|Ddr1|12305|discoidin domain receptor family, member 1	AK031442|Ddr1|12305|discoidin domain receptor family, member 1	NM_007584|Ddr1|12305|discoidin domain receptor family, member 1	NM_172962|Ddr1|12305|discoidin domain receptor family, member 1
mm9_v1_chr2_-_30329717_30329736	0.117368	GLI1..3.p2	BC003464|Ier5l|72500|immediate early response 5-like	BC010234|Ier5l|72500|immediate early response 5-like	BC040084|Ier5l|72500|immediate early response 5-like	NM_030244|Ier5l|72500|immediate early response 5-like	AK012145|Ier5l|72500|immediate early response 5-like
mm9_v1_chr6_-_115709004_115709016	0.116558	GLI1..3.p2	NM_144805|Tmem40|94346|transmembrane protein 40
mm9_v1_chr5_+_32913539_32913707	0.116481	GLI1..3.p2	AK035612|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	AK031316|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	AK052478|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	NM_009535|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	X67677|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	BC010594|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm9_v1_chrX_+_71516128_71516339	0.115105	GLI1..3.p2	NM_052835|Rpl10|110954|ribosomal protein 10	AK146217|Rpl10|110954|ribosomal protein 10	AK011022|Rpl10|110954|ribosomal protein 10	AK088777|Rpl10|110954|ribosomal protein 10	AK144831|Rpl10|110954|ribosomal protein 10	AK151416|Rpl10|110954|ribosomal protein 10	AK151655|Rpl10|110954|ribosomal protein 10	AK152123|Rpl10|110954|ribosomal protein 10	AK152854|Rpl10|110954|ribosomal protein 10	AK153345|Rpl10|110954|ribosomal protein 10	AK160618|Rpl10|110954|ribosomal protein 10	AK167966|Rpl10|110954|ribosomal protein 10	AK168854|Rpl10|110954|ribosomal protein 10	BC086917|Rpl10|110954|ribosomal protein 10	M93980|Rpl10|110954|ribosomal protein 10	AK014054|Rpl10|110954|ribosomal protein 10	AK151736|Rpl10|110954|ribosomal protein 10	AK166610|Rpl10|110954|ribosomal protein 10	AK168250|Rpl10|110954|ribosomal protein 10	AK012561|Rpl10|110954|ribosomal protein 10	AK167239|Rpl10|110954|ribosomal protein 10	BC092383|Rpl10|110954|ribosomal protein 10	BC098204|Rpl10|110954|ribosomal protein 10	X75312|Rpl10|110954|ribosomal protein 10	BC048872|Rpl10|110954|ribosomal protein 10	BC099437|Rpl10|110954|ribosomal protein 10	BC024901|Rpl10|110954|ribosomal protein 10	BC082293|Rpl10|110954|ribosomal protein 10	BC083327|Rpl10|110954|ribosomal protein 10	BC006068|Rpl10|110954|ribosomal protein 10
mm9_v1_chr4_+_154624156_154624175	0.114039	GLI1..3.p2	BC048854|2610002J02Rik|67513|RIKEN cDNA 2610002J02 gene
mm9_v1_chr17_-_35164860_35164960	0.110331	GLI1..3.p2	AK019275|Ng23|78376|Ng23 protein	BC147772|Ng23|78376|Ng23 protein	BC147780|Ng23|78376|Ng23 protein	BC172157|Ng23|78376|Ng23 protein	NM_023893|Ng23|78376|Ng23 protein
mm9_v1_chr12_-_16596537_16596561	0.109426	GLI1..3.p2	AK141489|Lpin1|14245|lipin 1	AF180471|Lpin1|14245|lipin 1
mm9_v1_chr5_-_144266956_144266980	0.109244	GLI1..3.p2	
mm9_v1_chr2_+_4897167_4897179	0.109214	GLI1..3.p2	EU368184|Ucma|68527|upper zone of growth plate and cartilage matrix associated	NM_001113558|Ucma|68527|upper zone of growth plate and cartilage matrix associated	NM_001165932|Ucma|68527|upper zone of growth plate and cartilage matrix associated	NM_026754|Ucma|68527|upper zone of growth plate and cartilage matrix associated
mm9_v1_chr4_-_45421590_45421646	0.108666	GLI1..3.p2	AK150362|Mcart1|230125|mitochondrial carrier triple repeat 1	AK151688|Mcart1|230125|mitochondrial carrier triple repeat 1	AK152171|Mcart1|230125|mitochondrial carrier triple repeat 1	AK156168|Mcart1|230125|mitochondrial carrier triple repeat 1	AK156342|Mcart1|230125|mitochondrial carrier triple repeat 1	AK146788|Mcart1|230125|mitochondrial carrier triple repeat 1	AK020275|Mcart1|230125|mitochondrial carrier triple repeat 1	AK164726|Mcart1|230125|mitochondrial carrier triple repeat 1	AK172225|Mcart1|230125|mitochondrial carrier triple repeat 1	AK051139|Mcart1|230125|mitochondrial carrier triple repeat 1	AK165253|Mcart1|230125|mitochondrial carrier triple repeat 1	NM_001009949|Mcart1|230125|mitochondrial carrier triple repeat 1
mm9_v1_chr5_-_122588070_122588070	0.107977	GLI1..3.p2	AK029513|Ccdc63|330188|coiled-coil domain containing 63	NM_183307|Ccdc63|330188|coiled-coil domain containing 63
mm9_v1_chr13_-_47138563_47138585	0.107751	GLI1..3.p2	AF046887|Tpmt|22017|thiopurine methyltransferase	NM_016785|Tpmt|22017|thiopurine methyltransferase
mm9_v1_chr1_-_174562955_174562999	0.106982	GLI1..3.p2	AK004912|Dusp23|68440|dual specificity phosphatase 23
mm9_v1_chr5_+_32761471_32761527	0.106978	GLI1..3.p2	AK171283|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK089067|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr8_+_77557582_77557708	0.106011	GLI1..3.p2	NM_001136259|Tom1|21968|target of myb1 homolog (chicken)	NM_011622|Tom1|21968|target of myb1 homolog (chicken)	AJ006972|Tom1|21968|target of myb1 homolog (chicken)	AK051245|Tom1|21968|target of myb1 homolog (chicken)	BC157905|Tom1|21968|target of myb1 homolog (chicken)	BC158042|Tom1|21968|target of myb1 homolog (chicken)	BC021633|Tom1|21968|target of myb1 homolog (chicken)	AK150143|Tom1|21968|target of myb1 homolog (chicken)	AK160403|Tom1|21968|target of myb1 homolog (chicken)	AK028398|Tom1|21968|target of myb1 homolog (chicken)	BC093520|Tom1|21968|target of myb1 homolog (chicken)	AK184431|Tom1|21968|target of myb1 homolog (chicken)
mm9_v1_chr2_-_90905846_90905881	0.104848	GLI1..3.p2	AK003191|Slc39a13|68427|solute carrier family 39 (metal ion transporter), member 13
mm9_v1_chr7_-_148042164_148042281	0.104303	GLI1..3.p2	AK011508|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like	BC019730|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like	AK161239|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like	NM_018742|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like
mm9_v1_chr5_+_138188092_138188197	0.104262	GLI1..3.p2	BC018544|Tsc22d4|78829|TSC22 domain family, member 4	AK144806|Tsc22d4|78829|TSC22 domain family, member 4
mm9_v1_chr7_-_133520899_133520943	0.103177	GLI1..3.p2	BC026854|Spns1|73658|spinster homolog 1 (Drosophila)	AK033907|Spns1|73658|spinster homolog 1 (Drosophila)	AF212372|Spns1|73658|spinster homolog 1 (Drosophila)	AK154353|Spns1|73658|spinster homolog 1 (Drosophila)	AK166931|Spns1|73658|spinster homolog 1 (Drosophila)	AK008721|Spns1|73658|spinster homolog 1 (Drosophila)
mm9_v1_chr4_+_155213788_155213790	0.10296	GLI1..3.p2	NM_024263|Mxra8|74761|matrix-remodelling associated 8
mm9_v1_chr11_+_115891682_115891695	0.10197	GLI1..3.p2	BC054452|Unk|217331|unkempt homolog (Drosophila)
mm9_v1_chr8_+_119983566_119983649	0.101789	GLI1..3.p2	AK049761|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr1_-_174149989_174150025	0.101612	GLI1..3.p2	NM_009813|Casq1|12372|calsequestrin 1
mm9_v1_chr17_+_34176381_34176393	0.101601	GLI1..3.p2	NM_009926|Col11a2|12815|collagen, type XI, alpha 2	U16789|Col11a2|12815|collagen, type XI, alpha 2
mm9_v1_chr5_-_99466008_99466097	0.101287	GLI1..3.p2	BC113205|Prkg2|19092|protein kinase, cGMP-dependent, type II	AK038739|Prkg2|19092|protein kinase, cGMP-dependent, type II	AK081422|Prkg2|19092|protein kinase, cGMP-dependent, type II	NM_008926|Prkg2|19092|protein kinase, cGMP-dependent, type II
mm9_v1_chr14_+_31764562_31764704	0.0973569	GLI1..3.p2	AK078809|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AJ223071|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	Y09234|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AK147381|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AK132803|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AK149584|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AK168094|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	BC057939|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AF099067|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	NM_011849|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AK144130|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4
mm9_v1_chr6_+_87859720_87859763	0.0964338	GLI1..3.p2	AK192006|Copg|54161|coatomer protein complex, subunit gamma	AK196464|Copg|54161|coatomer protein complex, subunit gamma
mm9_v1_chr8_-_81345034_81345050	0.095396	GLI1..3.p2	AK158236|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_001191004|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_030145|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr1_+_59970358_59970454	0.0943659	GLI1..3.p2	BC080299|Fam117b|72750|family with sequence similarity 117, member B
mm9_v1_chr5_-_92471603_92471743	0.0937848	GLI1..3.p2	AK145688|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AK139820|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AK030598|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AB029067|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)
mm9_v1_chr17_+_75404865_75404880	0.0929722	GLI1..3.p2	NM_019919|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chr2_+_69735513_69735613	0.0914743	GLI1..3.p2	BC145475|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3	BC172146|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3
mm9_v1_chr2_-_77008655_77008700	0.0913855	GLI1..3.p2	AK045498|Ccdc141|545428|coiled-coil domain containing 141	AK011952|Ccdc141|545428|coiled-coil domain containing 141	AK053175|Ccdc141|545428|coiled-coil domain containing 141	NM_001025576|Ccdc141|545428|coiled-coil domain containing 141	AK041121|Ccdc141|545428|coiled-coil domain containing 141
mm9_v1_chr7_-_133520876_133520891	0.0912962	GLI1..3.p2	BC085491|Spns1|73658|spinster homolog 1 (Drosophila)
mm9_v1_chr2_-_26766145_26766181	0.0905571	GLI1..3.p2	BC018225|Med22|20933|mediator complex subunit 22	NM_001033908|Med22|20933|mediator complex subunit 22	NM_011513|Med22|20933|mediator complex subunit 22
mm9_v1_chr4_-_135129534_135129534	0.0902178	GLI1..3.p2	BC089372|Grhl3|230824|grainyhead-like 3 (Drosophila)	NM_001013756|Grhl3|230824|grainyhead-like 3 (Drosophila)
mm9_v1_chr4_+_154243693_154243744	0.0899819	GLI1..3.p2	AF176569|Mmel1|27390|membrane metallo-endopeptidase-like 1	NM_013783|Mmel1|27390|membrane metallo-endopeptidase-like 1	AF157105|Mmel1|27390|membrane metallo-endopeptidase-like 1
mm9_v1_chr6_-_143048580_143048646	0.0898887	GLI1..3.p2	AK029825|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	AK021056|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	BC027763|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	AK143732|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	NM_001109688|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	NM_029081|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	NM_029897|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene
mm9_v1_chr18_-_77285981_77286025	0.0893476	GLI1..3.p2	BC056963|Katnal2|71206|katanin p60 subunit A-like 2	AK014074|Katnal2|71206|katanin p60 subunit A-like 2	BC069977|Katnal2|71206|katanin p60 subunit A-like 2
mm9_v1_chr9_+_118415358_118415568	0.088453	GLI1..3.p2	AK161568|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	AK172292|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC037641|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	AF051357|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC003268|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC096467|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	NM_018748|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC023102|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC057561|Golga4|54214|golgi autoantigen, golgin subfamily a, 4
mm9_v1_chr3_-_157694667_157694727	0.0884346	GLI1..3.p2	BC069945|Srsf11|69207|serine/arginine-rich splicing factor 11	BC021809|Srsf11|69207|serine/arginine-rich splicing factor 11	AK029394|Srsf11|69207|serine/arginine-rich splicing factor 11	BC002111|Srsf11|69207|serine/arginine-rich splicing factor 11	AK146719|Srsf11|69207|serine/arginine-rich splicing factor 11	AK002411|Srsf11|69207|serine/arginine-rich splicing factor 11	NM_001093753|Srsf11|69207|serine/arginine-rich splicing factor 11
mm9_v1_chr18_-_34666454_34666491	0.0883359	GLI1..3.p2	AK029766|Fam13b|225358|family with sequence similarity 13, member B	BC031465|Fam13b|225358|family with sequence similarity 13, member B	NM_146084|Fam13b|225358|family with sequence similarity 13, member B	AK084711|Fam13b|225358|family with sequence similarity 13, member B
mm9_v1_chr4_+_83171448_83171542	0.0879249	GLI1..3.p2	NM_001081012|4930473A06Rik|320226|RIKEN cDNA 4930473A06 gene	AK170886|4930473A06Rik|320226|RIKEN cDNA 4930473A06 gene	AK015166|4930473A06Rik|320226|RIKEN cDNA 4930473A06 gene	AK029637|4930473A06Rik|320226|RIKEN cDNA 4930473A06 gene	AK015563|4930473A06Rik|320226|RIKEN cDNA 4930473A06 gene	AK041005|4930473A06Rik|320226|RIKEN cDNA 4930473A06 gene	BC023323|4930473A06Rik|320226|RIKEN cDNA 4930473A06 gene	BC172165|4930473A06Rik|320226|RIKEN cDNA 4930473A06 gene
mm9_v1_chr17_+_46384981_46385245	0.0869557	GLI1..3.p2	NM_145353|Yipf3|28064|Yip1 domain family, member 3	AK011822|Yipf3|28064|Yip1 domain family, member 3	BC019384|Yipf3|28064|Yip1 domain family, member 3	BC011161|Yipf3|28064|Yip1 domain family, member 3	BC100575|Yipf3|28064|Yip1 domain family, member 3	AK149957|Yipf3|28064|Yip1 domain family, member 3	AK183797|Yipf3|28064|Yip1 domain family, member 3
mm9_v1_chr14_-_21167291_21167342	0.086682	GLI1..3.p2	BC013470|Ecd|70601|ecdysoneless homolog (Drosophila)	AK028664|Ecd|70601|ecdysoneless homolog (Drosophila)	NM_027475|Ecd|70601|ecdysoneless homolog (Drosophila)
mm9_v1_chr11_+_100831192_100831209	0.0865118	GLI1..3.p2	AK009381|Ptrf|19285|polymerase I and transcript release factor
mm9_v1_chr14_+_13116767_13116814	0.0864968	GLI1..3.p2	BC057656|3830406C13Rik|218734|RIKEN cDNA 3830406C13 gene
mm9_v1_chr9_-_78226334_78226394	0.0854326	GLI1..3.p2	AB283026|Ooep|67968|oocyte expressed protein homolog (dog)	BC062245|Ooep|67968|oocyte expressed protein homolog (dog)	AK133554|Ooep|67968|oocyte expressed protein homolog (dog)	AK135950|Ooep|67968|oocyte expressed protein homolog (dog)	AK136199|Ooep|67968|oocyte expressed protein homolog (dog)	AK145510|Ooep|67968|oocyte expressed protein homolog (dog)	AK010266|Ooep|67968|oocyte expressed protein homolog (dog)	AK010809|Ooep|67968|oocyte expressed protein homolog (dog)	DQ238107|Ooep|67968|oocyte expressed protein homolog (dog)	NM_026480|Ooep|67968|oocyte expressed protein homolog (dog)
mm9_v1_chr17_-_56214328_56214451	0.0834014	GLI1..3.p2	BC016412|Ubxn6|66530|UBX domain protein 6	AK148170|Ubxn6|66530|UBX domain protein 6	BC049963|Ubxn6|66530|UBX domain protein 6	NM_024432|Ubxn6|66530|UBX domain protein 6	AK008942|Ubxn6|66530|UBX domain protein 6	AF272895|Ubxn6|66530|UBX domain protein 6	AK161273|Ubxn6|66530|UBX domain protein 6	AK075705|Ubxn6|66530|UBX domain protein 6	AK082510|Ubxn6|66530|UBX domain protein 6
mm9_v1_chr11_-_106576464_106576537	0.0831476	GLI1..3.p2	L06039|Pecam1|18613|platelet/endothelial cell adhesion molecule 1
mm9_v1_chrX_+_70310125_70310125	0.0826754	GLI1..3.p2	NM_153169|Pnma3|245468|paraneoplastic antigen MA3
mm9_v1_chr4_-_148500769_148500849	0.0809393	GLI1..3.p2	AF013253|Cort|12854|cortistatin	AK013496|Cort|12854|cortistatin	NM_007745|Cort|12854|cortistatin
mm9_v1_chr19_+_23761879_23761891	0.0805711	GLI1..3.p2	NM_028208|Ptar1|72351|protein prenyltransferase alpha subunit repeat containing 1
mm9_v1_chr11_+_53164287_53164334	0.0796169	GLI1..3.p2	AF190449|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr11_-_84338922_84339036	0.0788997	GLI1..3.p2	Z27410|Lhx1|16869|LIM homeobox protein 1	BC092374|Lhx1|16869|LIM homeobox protein 1	NM_008498|Lhx1|16869|LIM homeobox protein 1	AK141086|Lhx1|16869|LIM homeobox protein 1
mm9_v1_chr4_-_116494091_116494112	0.07817	GLI1..3.p2	AK049217|Hpdl|242642|4-hydroxyphenylpyruvate dioxygenase-like	AK043902|Hpdl|242642|4-hydroxyphenylpyruvate dioxygenase-like	AK078929|Hpdl|242642|4-hydroxyphenylpyruvate dioxygenase-like	NM_146256|Hpdl|242642|4-hydroxyphenylpyruvate dioxygenase-like
mm9_v1_chr1_+_74283325_74283370	0.0780503	GLI1..3.p2	BC115750|Arpc2|76709|actin related protein 2/3 complex, subunit 2
mm9_v1_chr8_-_74967581_74967676	0.0777979	GLI1..3.p2	AB206786|Calr3|73316|calreticulin 3	AK006582|Calr3|73316|calreticulin 3	NM_028500|Calr3|73316|calreticulin 3
mm9_v1_chr4_-_108506131_108506262	0.0760336	GLI1..3.p2	BC024920|Btf3l4|70533|basic transcription factor 3-like 4	BC058282|Btf3l4|70533|basic transcription factor 3-like 4	AK011367|Btf3l4|70533|basic transcription factor 3-like 4	AK167256|Btf3l4|70533|basic transcription factor 3-like 4	BC138215|Btf3l4|70533|basic transcription factor 3-like 4	BC138216|Btf3l4|70533|basic transcription factor 3-like 4	BC024612|Btf3l4|70533|basic transcription factor 3-like 4	AK013120|Btf3l4|70533|basic transcription factor 3-like 4	AK076283|Btf3l4|70533|basic transcription factor 3-like 4	NM_027453|Btf3l4|70533|basic transcription factor 3-like 4	AK004239|Btf3l4|70533|basic transcription factor 3-like 4
mm9_v1_chr19_+_32670279_32670283	0.07577	GLI1..3.p2	AK137675|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2
mm9_v1_chr15_-_76554119_76554177	0.0757513	GLI1..3.p2	AK186599|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene
mm9_v1_chr5_+_32761426_32761470	0.0753422	GLI1..3.p2	AK166168|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK166623|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK168141|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr7_+_52877180_52877296	0.0744262	GLI1..3.p2	AB195681|Izumo1|73456|izumo sperm-egg fusion 1	AK006830|Izumo1|73456|izumo sperm-egg fusion 1	NM_001018013|Izumo1|73456|izumo sperm-egg fusion 1	BC139270|Izumo1|73456|izumo sperm-egg fusion 1
mm9_v1_chr19_-_6532339_6532383	0.0741082	GLI1..3.p2	AK045662|Gm14964|100008567|predicted gene 14964
mm9_v1_chr12_+_22990655_22990730	0.073969	GLI1..3.p2	BC063063|2410018L13Rik|69732|RIKEN cDNA 2410018L13 gene	AK134640|2410018L13Rik|69732|RIKEN cDNA 2410018L13 gene	AK013418|2410018L13Rik|69732|RIKEN cDNA 2410018L13 gene	AK010549|2410018L13Rik|69732|RIKEN cDNA 2410018L13 gene
mm9_v1_chr6_-_88791875_88791901	0.0731659	GLI1..3.p2	AK049100|Abtb1|80283|ankyrin repeat and BTB (POZ) domain containing 1	AK155432|Abtb1|80283|ankyrin repeat and BTB (POZ) domain containing 1	AK155505|Abtb1|80283|ankyrin repeat and BTB (POZ) domain containing 1	AK155644|Abtb1|80283|ankyrin repeat and BTB (POZ) domain containing 1	AK088437|Abtb1|80283|ankyrin repeat and BTB (POZ) domain containing 1
mm9_v1_chr8_+_87595619_87595694	0.0730984	GLI1..3.p2	AK159104|Dhps|330817|deoxyhypusine synthase	NM_001039514|Dhps|330817|deoxyhypusine synthase	BC061234|Dhps|330817|deoxyhypusine synthase
mm9_v1_chr10_-_41023009_41023070	0.0724513	GLI1..3.p2	AK169881|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK172341|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK172130|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK155392|Fig4|103199|FIG4 homolog (S. cerevisiae)	BC031887|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK041196|Fig4|103199|FIG4 homolog (S. cerevisiae)	BC015295|Fig4|103199|FIG4 homolog (S. cerevisiae)	NM_133999|Fig4|103199|FIG4 homolog (S. cerevisiae)
mm9_v1_chr15_-_79158683_79158800	0.0723964	GLI1..3.p2	NM_001199023|Pla2g6|53357|phospholipase A2, group VI	NM_001199024|Pla2g6|53357|phospholipase A2, group VI	NM_001199025|Pla2g6|53357|phospholipase A2, group VI	NM_016915|Pla2g6|53357|phospholipase A2, group VI
mm9_v1_chr6_-_120443824_120443824	0.0719943	GLI1..3.p2	AF277399|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	BC137862|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	NM_033567|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)
mm9_v1_chr9_+_21807437_21807509	0.0719296	GLI1..3.p2	AK153931|Prkcsh|19089|protein kinase C substrate 80K-H	AK159705|Prkcsh|19089|protein kinase C substrate 80K-H	AK137661|Prkcsh|19089|protein kinase C substrate 80K-H	NM_008925|Prkcsh|19089|protein kinase C substrate 80K-H	U92794|Prkcsh|19089|protein kinase C substrate 80K-H	BC009816|Prkcsh|19089|protein kinase C substrate 80K-H
mm9_v1_chr6_+_120314442_120314515	0.0698463	GLI1..3.p2	BC080691|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK133589|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK154025|Kdm5a|214899|lysine (K)-specific demethylase 5A	BC010717|Kdm5a|214899|lysine (K)-specific demethylase 5A
mm9_v1_chr14_+_47502637_47502773	0.0690501	GLI1..3.p2	NM_001037221|Samd4|74480|sterile alpha motif domain containing 4	NM_028966|Samd4|74480|sterile alpha motif domain containing 4	AK134243|Samd4|74480|sterile alpha motif domain containing 4	DQ278487|Samd4|74480|sterile alpha motif domain containing 4	AK133470|Samd4|74480|sterile alpha motif domain containing 4	BC145827|Samd4|74480|sterile alpha motif domain containing 4	BC145829|Samd4|74480|sterile alpha motif domain containing 4
mm9_v1_chr17_-_47970167_47970209	0.0689799	GLI1..3.p2	U57822|Mdfi|17240|MyoD family inhibitor	BC006018|Mdfi|17240|MyoD family inhibitor	NM_010783|Mdfi|17240|MyoD family inhibitor	U57821|Mdfi|17240|MyoD family inhibitor
mm9_v1_chr6_-_88791829_88791867	0.0681219	GLI1..3.p2	AB053477|Abtb1|80283|ankyrin repeat and BTB (POZ) domain containing 1	BC003234|Abtb1|80283|ankyrin repeat and BTB (POZ) domain containing 1
mm9_v1_chr4_+_101390011_101390043	0.0670725	GLI1..3.p2	NM_001122899|Lepr|16847|leptin receptor	NM_010704|Lepr|16847|leptin receptor	NM_146146|Lepr|16847|leptin receptor	U52915|Lepr|16847|leptin receptor
mm9_v1_chr18_-_68459958_68459986	0.0668136	GLI1..3.p2	AK077093|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene	NM_153794|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene
mm9_v1_chr17_-_56749096_56749193	0.0663885	GLI1..3.p2	BC056164|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene	BC049674|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene	AK075942|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene	AY091637|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene	AK075961|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene	NM_153152|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene
mm9_v1_chr1_-_137815600_137815702	0.0662262	GLI1..3.p2	NM_019645|Pkp1|18772|plakophilin 1	Y07941|Pkp1|18772|plakophilin 1	BC139041|Pkp1|18772|plakophilin 1	BC139042|Pkp1|18772|plakophilin 1
mm9_v1_chr11_+_57332162_57332229	0.0652451	GLI1..3.p2	AK076071|Mfap3|216760|microfibrillar-associated protein 3	NM_145426|Mfap3|216760|microfibrillar-associated protein 3	NM_180599|Mfap3|216760|microfibrillar-associated protein 3	AK042988|Mfap3|216760|microfibrillar-associated protein 3	AK080405|Mfap3|216760|microfibrillar-associated protein 3	AK155122|Mfap3|216760|microfibrillar-associated protein 3	BC006828|Mfap3|216760|microfibrillar-associated protein 3
mm9_v1_chr2_+_74549973_74550049	0.0647213	GLI1..3.p2	AK138525|Hoxd3|15434|homeobox D3	AK164120|1700109F18Rik|73429|RIKEN cDNA 1700109F18 gene	NM_010468|Hoxd3|15434|homeobox D3
mm9_v1_chr11_+_70353771_70353807	0.0637809	GLI1..3.p2	AK143930|Pld2|18806|phospholipase D2	AK170701|Pld2|18806|phospholipase D2
mm9_v1_chr19_-_37338378_37338600	0.0637196	GLI1..3.p2	AK016444|4931408D14Rik|77059|RIKEN cDNA 4931408D14 gene	AK040817|4931408D14Rik|77059|RIKEN cDNA 4931408D14 gene	AK168860|4931408D14Rik|77059|RIKEN cDNA 4931408D14 gene
mm9_v1_chr14_-_56503058_56503074	0.0636913	GLI1..3.p2	AK081085|Cbln3|56410|cerebellin 3 precursor protein	AF218379|Cbln3|56410|cerebellin 3 precursor protein
mm9_v1_chr9_+_79914685_79914721	0.0635749	GLI1..3.p2	AK053904|Senp6|215351|SUMO/sentrin specific peptidase 6	NM_146003|Senp6|215351|SUMO/sentrin specific peptidase 6
mm9_v1_chr2_-_66473008_66473018	0.0626901	GLI1..3.p2	NM_018852|Scn9a|20274|sodium channel, voltage-gated, type IX, alpha	AK141871|Scn9a|20274|sodium channel, voltage-gated, type IX, alpha
mm9_v1_chr10_-_74495269_74495330	0.0626695	GLI1..3.p2	BC147792|Rtdr1|71236|rhabdoid tumor deletion region gene 1	BC147801|Rtdr1|71236|rhabdoid tumor deletion region gene 1	NM_001163534|Rtdr1|71236|rhabdoid tumor deletion region gene 1	NM_001163535|Rtdr1|71236|rhabdoid tumor deletion region gene 1	AK017008|Rtdr1|71236|rhabdoid tumor deletion region gene 1	AK077078|Rtdr1|71236|rhabdoid tumor deletion region gene 1	NM_001163533|Rtdr1|71236|rhabdoid tumor deletion region gene 1	NM_027730|Rtdr1|71236|rhabdoid tumor deletion region gene 1
mm9_v1_chr4_+_137950977_137951112	0.0615781	GLI1..3.p2	AB041806|AB041806|58213|hypothetical protein, MNCb-2457
mm9_v1_chr8_+_23171187_23171223	0.0603493	GLI1..3.p2	NM_183142|Alg11|207958|asparagine-linked glycosylation 11 homolog (yeast, alpha-1,2-mannosyltransferase)	AK157746|Alg11|207958|asparagine-linked glycosylation 11 homolog (yeast, alpha-1,2-mannosyltransferase)	AK046475|Alg11|207958|asparagine-linked glycosylation 11 homolog (yeast, alpha-1,2-mannosyltransferase)	BC061469|Alg11|207958|asparagine-linked glycosylation 11 homolog (yeast, alpha-1,2-mannosyltransferase)	AK134312|Alg11|207958|asparagine-linked glycosylation 11 homolog (yeast, alpha-1,2-mannosyltransferase)
mm9_v1_chr5_+_138558132_138558268	0.0599886	GLI1..3.p2	NM_001044703|Zscan21|22697|zinc finger and SCAN domain containing 21	NM_001044704|Zscan21|22697|zinc finger and SCAN domain containing 21	NM_001044705|Zscan21|22697|zinc finger and SCAN domain containing 21	NM_011757|Zscan21|22697|zinc finger and SCAN domain containing 21	AK146776|Zscan21|22697|zinc finger and SCAN domain containing 21	AK146875|Zscan21|22697|zinc finger and SCAN domain containing 21	U41671|Zscan21|22697|zinc finger and SCAN domain containing 21	BC010591|Zscan21|22697|zinc finger and SCAN domain containing 21	D10630|Zscan21|22697|zinc finger and SCAN domain containing 21	X63747|Zscan21|22697|zinc finger and SCAN domain containing 21
mm9_v1_chr2_+_26439383_26439424	0.059984	GLI1..3.p2	NM_198724|Egfl7|353156|EGF-like domain 7	NM_198725|Egfl7|353156|EGF-like domain 7	AK002601|Egfl7|353156|EGF-like domain 7	AY239290|Egfl7|353156|EGF-like domain 7	BC024610|Egfl7|353156|EGF-like domain 7
mm9_v1_chr19_+_43764248_43764298	0.0599744	GLI1..3.p2	AK045130|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7
mm9_v1_chr15_+_25914202_25914226	0.0598991	GLI1..3.p2	BC006964|Zfp622|52521|zinc finger protein 622
mm9_v1_chr4_+_140976693_140976693	0.0586028	GLI1..3.p2	AK030025|Hspb7|29818|heat shock protein family, member 7 (cardiovascular)	NM_013868|Hspb7|29818|heat shock protein family, member 7 (cardiovascular)
mm9_v1_chr11_-_96168185_96168223	0.0585863	GLI1..3.p2	AK002860|0610040B09Rik|75395|RIKEN cDNA 0610040B09 gene
mm9_v1_chr11_+_102962999_102963023	0.0584452	GLI1..3.p2	NM_025988|Acbd4|67131|acyl-Coenzyme A binding domain containing 4	AK079604|Acbd4|67131|acyl-Coenzyme A binding domain containing 4
mm9_v1_chr11_+_60526123_60526177	0.0583979	GLI1..3.p2	BC029987|Llgl1|16897|lethal giant larvae homolog 1 (Drosophila)
mm9_v1_chr11_-_97490456_97490494	0.0582762	GLI1..3.p2	BC006054|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene
mm9_v1_chr4_+_154353269_154353401	0.0576704	GLI1..3.p2	BC027074|Pank4|269614|pantothenate kinase 4
mm9_v1_chr1_+_74283381_74283464	0.0574808	GLI1..3.p2	AK083263|Arpc2|76709|actin related protein 2/3 complex, subunit 2
mm9_v1_chr10_+_39089853_39089891	0.0563495	GLI1..3.p2	M27266|Fyn|14360|Fyn proto-oncogene	U70324|Fyn|14360|Fyn proto-oncogene
mm9_v1_chr8_-_74090499_74090547	0.0555403	GLI1..3.p2	BC021911|Nxnl1|234404|nucleoredoxin-like 1	BC017153|Nxnl1|234404|nucleoredoxin-like 1	NM_145598|Nxnl1|234404|nucleoredoxin-like 1
mm9_v1_chr1_-_174149963_174149971	0.0551025	GLI1..3.p2	BC064057|Casq1|12372|calsequestrin 1	U93291|Casq1|12372|calsequestrin 1
mm9_v1_chr14_+_32481114_32481230	0.0547833	GLI1..3.p2	AK189055|Btd|26363|biotinidase
mm9_v1_chr5_-_124637176_124637203	0.0529698	GLI1..3.p2	AK129364|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2	BC070452|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2
mm9_v1_chr16_+_20141134_20141212	0.0529575	GLI1..3.p2	NM_001033237|Yeats2|208146|YEATS domain containing 2	NM_001145930|Yeats2|208146|YEATS domain containing 2	NM_001145931|Yeats2|208146|YEATS domain containing 2	AK165933|Yeats2|208146|YEATS domain containing 2	AK160791|Yeats2|208146|YEATS domain containing 2
mm9_v1_chr7_-_86859071_86859071	0.0524591	GLI1..3.p2	BC141045|Kif7|16576|kinesin family member 7	BC145222|Kif7|16576|kinesin family member 7	NM_010626|Kif7|16576|kinesin family member 7
mm9_v1_chr11_+_6191622_6191675	0.0521033	GLI1..3.p2	AK150009|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	AK220536|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	AK008811|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	BC061232|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	AK201619|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	AK204071|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	BC057354|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	AK088582|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)
mm9_v1_chr6_+_90283246_90283309	0.0516876	GLI1..3.p2	AK149464|Uroc1|243537|urocanase domain containing 1	NM_144940|Uroc1|243537|urocanase domain containing 1	BC022133|Uroc1|243537|urocanase domain containing 1
mm9_v1_chr15_+_102044730_102044866	0.051058	GLI1..3.p2	AK004098|Zfp740|68744|zinc finger protein 740
mm9_v1_chr6_-_56873822_56873940	0.0508232	GLI1..3.p2	AK011894|Nt5c3|107569|5'-nucleotidase, cytosolic III	AK011525|Nt5c3|107569|5'-nucleotidase, cytosolic III	NM_026004|Nt5c3|107569|5'-nucleotidase, cytosolic III
mm9_v1_chr13_-_64254466_64254592	0.0505672	GLI1..3.p2	BC119531|Zfp367|238673|zinc finger protein 367	BC119532|Zfp367|238673|zinc finger protein 367	AK033288|Zfp367|238673|zinc finger protein 367	NM_175494|Zfp367|238673|zinc finger protein 367	AK041331|Zfp367|238673|zinc finger protein 367	AK041361|Zfp367|238673|zinc finger protein 367	AK077686|Zfp367|238673|zinc finger protein 367
mm9_v1_chr12_-_103943059_103943209	0.0502789	GLI1..3.p2	BC056464|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	AK038913|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	NM_172584|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase
mm9_v1_chr10_+_127496140_127496244	0.0493563	GLI1..3.p2	BC085264|Ptges3|56351|prostaglandin E synthase 3 (cytosolic)	BC003708|Ptges3|56351|prostaglandin E synthase 3 (cytosolic)	AK075932|Ptges3|56351|prostaglandin E synthase 3 (cytosolic)	AK168721|Ptges3|56351|prostaglandin E synthase 3 (cytosolic)	AK017742|Ptges3|56351|prostaglandin E synthase 3 (cytosolic)	AB024935|Ptges3|56351|prostaglandin E synthase 3 (cytosolic)
mm9_v1_chr2_-_26766133_26766139	0.0488456	GLI1..3.p2	AK166474|Med22|20933|mediator complex subunit 22	AK144744|Med22|20933|mediator complex subunit 22
mm9_v1_chr3_+_97705125_97705203	0.0487803	GLI1..3.p2	AK010363|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK034973|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK017237|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK037918|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK088514|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK134215|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	NM_011342|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK089928|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	BC009024|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	U91538|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)
mm9_v1_chr13_-_23853025_23853117	0.0486752	GLI1..3.p2	NM_178192|Hist1h4a|326619|histone cluster 1, H4a	AK016310|Hist1h4a|326619|histone cluster 1, H4a	BC119241|Hist1h4a|326619|histone cluster 1, H4a	BC119243|Hist1h4a|326619|histone cluster 1, H4a
mm9_v1_chr3_-_53667683_53667736	0.048541	GLI1..3.p2	BC051554|Ufm1|67890|ubiquitin-fold modifier 1	AK008280|Ufm1|67890|ubiquitin-fold modifier 1	AK007788|Ufm1|67890|ubiquitin-fold modifier 1	AK167321|Ufm1|67890|ubiquitin-fold modifier 1	AK148146|Ufm1|67890|ubiquitin-fold modifier 1	AK089948|Ufm1|67890|ubiquitin-fold modifier 1	AK167301|Ufm1|67890|ubiquitin-fold modifier 1	AK011737|Ufm1|67890|ubiquitin-fold modifier 1	AK166332|Ufm1|67890|ubiquitin-fold modifier 1	BC061065|Ufm1|67890|ubiquitin-fold modifier 1	NM_026435|Ufm1|67890|ubiquitin-fold modifier 1
mm9_v1_chr16_-_91044623_91044646	0.0477663	GLI1..3.p2	NM_026110|Gcfc1|67367|GC-rich sequence DNA-binding factor 1
mm9_v1_chr7_-_30980042_30980100	0.0472675	GLI1..3.p2	AF058298|Capns1|12336|calpain, small subunit 1	BC018352|Capns1|12336|calpain, small subunit 1	BC090988|Capns1|12336|calpain, small subunit 1	NM_009795|Capns1|12336|calpain, small subunit 1
mm9_v1_chr15_-_79233664_79233756	0.046547	GLI1..3.p2	AK048138|Tmem184b|223693|transmembrane protein 184b	AK028196|Tmem184b|223693|transmembrane protein 184b	AK029129|Tmem184b|223693|transmembrane protein 184b	AK170086|Tmem184b|223693|transmembrane protein 184b	AK149366|Tmem184b|223693|transmembrane protein 184b	AK158789|Tmem184b|223693|transmembrane protein 184b	NM_172608|Tmem184b|223693|transmembrane protein 184b
mm9_v1_chr9_+_108410335_108410519	0.0459721	GLI1..3.p2	NM_133794|Qars|97541|glutaminyl-tRNA synthetase	AK145632|Qars|97541|glutaminyl-tRNA synthetase	AK155759|Qars|97541|glutaminyl-tRNA synthetase	AK161817|Qars|97541|glutaminyl-tRNA synthetase	AK163863|Qars|97541|glutaminyl-tRNA synthetase	AK170826|Qars|97541|glutaminyl-tRNA synthetase	AK171293|Qars|97541|glutaminyl-tRNA synthetase	AK030554|Qars|97541|glutaminyl-tRNA synthetase	AK088049|Qars|97541|glutaminyl-tRNA synthetase	AK165454|Qars|97541|glutaminyl-tRNA synthetase	AK167782|Qars|97541|glutaminyl-tRNA synthetase	AK004814|Qars|97541|glutaminyl-tRNA synthetase	BC079854|Qars|97541|glutaminyl-tRNA synthetase	AK180680|Qars|97541|glutaminyl-tRNA synthetase
mm9_v1_chr11_-_55854384_55854488	0.0456759	GLI1..3.p2	AY057384|Nmur2|216749|neuromedin U receptor 2	BC137611|Nmur2|216749|neuromedin U receptor 2	AK036756|Nmur2|216749|neuromedin U receptor 2	NM_153079|Nmur2|216749|neuromedin U receptor 2
mm9_v1_chr9_+_77956998_77957048	0.0445937	GLI1..3.p2	AK154185|Ick|56542|intestinal cell kinase	NM_001163780|Ick|56542|intestinal cell kinase
mm9_v1_chr5_-_124804538_124804560	0.0443474	GLI1..3.p2	BC103772|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm9_v1_chr2_+_25417458_25417557	0.0443407	GLI1..3.p2	
mm9_v1_chr8_+_48909835_48909835	0.044109	GLI1..3.p2	AK008821|Cldn22|75677|claudin 22	NM_029383|Cldn22|75677|claudin 22
mm9_v1_chr11_+_68933954_68933975	0.0439776	GLI1..3.p2	AK050791|Hes7|84653|hairy and enhancer of split 7 (Drosophila)	BC134378|Hes7|84653|hairy and enhancer of split 7 (Drosophila)	NM_033041|Hes7|84653|hairy and enhancer of split 7 (Drosophila)	AB049065|Hes7|84653|hairy and enhancer of split 7 (Drosophila)
mm9_v1_chr6_-_93863547_93863683	0.04383	GLI1..3.p2	AK163800|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083321|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	BC060273|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083320|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr15_-_83263181_83263279	0.0435735	GLI1..3.p2	AK191560|Pacsin2|23970|protein kinase C and casein kinase substrate in neurons 2	AK198672|Pacsin2|23970|protein kinase C and casein kinase substrate in neurons 2	AK198717|Pacsin2|23970|protein kinase C and casein kinase substrate in neurons 2	AK199099|Pacsin2|23970|protein kinase C and casein kinase substrate in neurons 2	AK199784|Pacsin2|23970|protein kinase C and casein kinase substrate in neurons 2	AK202155|Pacsin2|23970|protein kinase C and casein kinase substrate in neurons 2	AK170299|Pacsin2|23970|protein kinase C and casein kinase substrate in neurons 2	AF128535|Pacsin2|23970|protein kinase C and casein kinase substrate in neurons 2	AK154785|Pacsin2|23970|protein kinase C and casein kinase substrate in neurons 2	NM_001159510|Pacsin2|23970|protein kinase C and casein kinase substrate in neurons 2	NM_011862|Pacsin2|23970|protein kinase C and casein kinase substrate in neurons 2
mm9_v1_chr6_-_125115580_125115612	0.0435377	GLI1..3.p2	BC093508|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC083149|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC091768|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC094037|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK191938|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK192040|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK199608|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK201736|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC085315|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC145810|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC145812|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	M32599|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC023196|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC092267|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC083065|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC095932|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC082592|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC092294|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	NM_008084|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC083079|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC085275|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC083080|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC085274|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC092252|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC020407|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC092264|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC096440|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC096590|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC110311|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase
mm9_v1_chr10_+_40290141_40290167	0.043514	GLI1..3.p2	DQ164804|Slc22a16|70840|solute carrier family 22 (organic cation transporter), member 16	BC138326|Slc22a16|70840|solute carrier family 22 (organic cation transporter), member 16	BC138327|Slc22a16|70840|solute carrier family 22 (organic cation transporter), member 16	BC100473|Slc22a16|70840|solute carrier family 22 (organic cation transporter), member 16	NM_027572|Slc22a16|70840|solute carrier family 22 (organic cation transporter), member 16
mm9_v1_chr11_+_109512220_109512328	0.0433099	GLI1..3.p2	AK005039|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	AK051068|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	AK053918|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	AK145797|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	NM_021880|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	AK147188|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	AK083383|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	AK027916|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	AK145860|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	BC003461|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha
mm9_v1_chr17_-_15147018_15147147	0.0432225	GLI1..3.p2	AK006370|Tcte3|21647|t-complex-associated testis expressed 3	AY172988|Tcte3|21647|t-complex-associated testis expressed 3	BC061136|Tcte3|21647|t-complex-associated testis expressed 3	BC048739|Tcte3|21647|t-complex-associated testis expressed 3	U21673|Tcte3|21647|t-complex-associated testis expressed 3	U21674|Tcte3|21647|t-complex-associated testis expressed 3	BC018245|Tcte3|21647|t-complex-associated testis expressed 3	BC131981|Tcte3|21647|t-complex-associated testis expressed 3	BC131983|Tcte3|21647|t-complex-associated testis expressed 3	NM_001123367|Gm3448|100041639|predicted gene 3448	NM_001123368|Gm3417|100041586|predicted gene 3417
mm9_v1_chr15_+_75098850_75098850	0.0432111	GLI1..3.p2	NM_008530|Ly6f|17071|lymphocyte antigen 6 complex, locus F
mm9_v1_chr8_+_125930981_125931146	0.0414963	GLI1..3.p2	NM_008559|Mc1r|17199|melanocortin 1 receptor	AK148437|Mc1r|17199|melanocortin 1 receptor
mm9_v1_chr11_-_109472638_109472693	0.040608	GLI1..3.p2	BC024883|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	BC024811|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1
mm9_v1_chr19_+_3958805_3958831	0.0405764	GLI1..3.p2	AK081788|1700055N04Rik|73458|RIKEN cDNA 1700055N04 gene
mm9_v1_chr13_-_55650696_55650820	0.0395595	GLI1..3.p2	BC023015|Fam193b|212483|family with sequence similarity 193, member B	BC021381|Fam193b|212483|family with sequence similarity 193, member B
mm9_v1_chr6_-_88791928_88791961	0.0388511	GLI1..3.p2	NM_030251|Abtb1|80283|ankyrin repeat and BTB (POZ) domain containing 1
mm9_v1_chr11_-_120673433_120673522	0.038622	GLI1..3.p2	X13135|Fasn|14104|fatty acid synthase	BC059850|Fasn|14104|fatty acid synthase
mm9_v1_chr8_+_47249009_47249101	0.0372829	GLI1..3.p2	AK048125|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	AK129358|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	AK082519|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	BC049135|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	AK020894|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	AK020776|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	AK016776|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene
mm9_v1_chr18_-_34166105_34166254	0.036978	GLI1..3.p2	BC089158|Epb4.1l4a|13824|erythrocyte protein band 4.1-like 4a	AK140485|Epb4.1l4a|13824|erythrocyte protein band 4.1-like 4a
mm9_v1_chr4_-_41454658_41454796	0.0369379	GLI1..3.p2	DQ873295|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene	DQ873296|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene	AK003742|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene	BC049629|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene	NM_028624|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene
mm9_v1_chr1_-_135557925_135557932	0.0367809	GLI1..3.p2	BC066163|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr7_+_133572272_133572289	0.036753	GLI1..3.p2	BC015287|Rabep2|70314|rabaptin, RAB GTPase binding effector protein 2	NM_030566|Rabep2|70314|rabaptin, RAB GTPase binding effector protein 2
mm9_v1_chr11_-_31724523_31724546	0.0358224	GLI1..3.p2	AK085420|D630024D03Rik|414116|RIKEN cDNA D630024D03 gene	AK158233|D630024D03Rik|414116|RIKEN cDNA D630024D03 gene	AK158188|D630024D03Rik|414116|RIKEN cDNA D630024D03 gene
mm9_v1_chr13_+_8202111_8202186	0.0358186	GLI1..3.p2	AK134964|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK051460|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK043249|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK139079|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK139273|Adarb2|94191|adenosine deaminase, RNA-specific, B2	NM_052977|Adarb2|94191|adenosine deaminase, RNA-specific, B2	BC059822|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK046083|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK033916|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK045538|Adarb2|94191|adenosine deaminase, RNA-specific, B2	BC052426|Adarb2|94191|adenosine deaminase, RNA-specific, B2
mm9_v1_chr7_-_16425027_16425027	0.0346949	GLI1..3.p2	NM_145710|Obox6|252830|oocyte specific homeobox 6
mm9_v1_chr7_-_134339388_134339535	0.0344175	GLI1..3.p2	AK167249|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	AK030393|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	BC079575|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	AK154346|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	AK010582|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	BC006920|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	AK031694|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	AK034689|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	NM_027353|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2
mm9_v1_chr11_-_98671371_98671404	0.0333179	GLI1..3.p2	AK087290|Gm12359|100037262|predicted gene 12359	AK142978|Gm12359|100037262|predicted gene 12359
mm9_v1_chr6_+_49345602_49345605	0.0332287	GLI1..3.p2	AF285580|Stk31|77485|serine threonine kinase 31	NM_029916|Stk31|77485|serine threonine kinase 31	BC137989|Stk31|77485|serine threonine kinase 31
mm9_v1_chr8_-_124884624_124884645	0.0330433	GLI1..3.p2	BC117988|Trhr2|170732|thyrotropin releasing hormone receptor 2	BC117989|Trhr2|170732|thyrotropin releasing hormone receptor 2	AF283762|Trhr2|170732|thyrotropin releasing hormone receptor 2	NM_133202|Trhr2|170732|thyrotropin releasing hormone receptor 2
mm9_v1_chr10_-_60846055_60846288	0.0324229	GLI1..3.p2	X99384|X99384|27355|cDNA sequence X99384	BC099531|X99384|27355|cDNA sequence X99384	BC052850|X99384|27355|cDNA sequence X99384	AK088577|X99384|27355|cDNA sequence X99384	AK146489|X99384|27355|cDNA sequence X99384	NM_013753|X99384|27355|cDNA sequence X99384
mm9_v1_chr4_+_120527397_120527477	0.0319533	GLI1..3.p2	AK047745|Rims3|242662|regulating synaptic membrane exocytosis 3	AK043152|Rims3|242662|regulating synaptic membrane exocytosis 3
mm9_v1_chr9_+_102737229_102737361	0.0315342	GLI1..3.p2	L21707|Ryk|20187|receptor-like tyrosine kinase	NM_001042607|Ryk|20187|receptor-like tyrosine kinase	NM_013649|Ryk|20187|receptor-like tyrosine kinase	L02210|Ryk|20187|receptor-like tyrosine kinase	M98547|Ryk|20187|receptor-like tyrosine kinase	AK144355|Ryk|20187|receptor-like tyrosine kinase	L38394|Ryk|20187|receptor-like tyrosine kinase
mm9_v1_chr11_+_98671106_98671158	0.0305923	GLI1..3.p2	NM_138660|Casc3|192160|cancer susceptibility candidate 3	AF526276|Casc3|192160|cancer susceptibility candidate 3
mm9_v1_chrX_-_66146227_66146227	0.0303184	GLI1..3.p2	NM_001098842|Gm6812|627927|predicted gene 6812
mm9_v1_chr3_-_127111869_127111953	0.0298359	GLI1..3.p2	AK047866|Ank2|109676|ankyrin 2, brain	AK084070|Ank2|109676|ankyrin 2, brain	AK036179|Ank2|109676|ankyrin 2, brain	AK166115|Ank2|109676|ankyrin 2, brain	AK046947|Ank2|109676|ankyrin 2, brain
mm9_v1_chr10_+_62706550_62706579	0.0295562	GLI1..3.p2	AK019546|Herc4|67345|hect domain and RLD 4
mm9_v1_chr12_+_78339999_78340029	0.0291105	GLI1..3.p2	AK048520|Fut8|53618|fucosyltransferase 8	NM_016893|Fut8|53618|fucosyltransferase 8	AK163494|Fut8|53618|fucosyltransferase 8
mm9_v1_chr15_-_79435423_79435538	0.0289702	GLI1..3.p2	BC116767|Dmc1|13404|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)	BC119081|Dmc1|13404|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)	D64107|Dmc1|13404|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)	NM_010059|Dmc1|13404|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)	D58419|Dmc1|13404|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)	AK076777|Dmc1|13404|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)	AK169570|Dmc1|13404|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)
mm9_v1_chr1_-_71632834_71632860	0.0283848	GLI1..3.p2	BC020287|Fn1|14268|fibronectin 1
mm9_v1_chr1_-_74931895_74931992	0.0278846	GLI1..3.p2	BC138435|Fev|260298|FEV (ETS oncogene family)	BC138436|Fev|260298|FEV (ETS oncogene family)	NM_153111|Fev|260298|FEV (ETS oncogene family)	AY049085|Fev|260298|FEV (ETS oncogene family)
mm9_v1_chr16_+_18249036_18249160	0.0277181	GLI1..3.p2	AK146391|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	BC046976|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	BC027431|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK034102|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK080170|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK133844|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK151422|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK153190|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK169240|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK150482|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK151311|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK151725|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK151778|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK152055|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK152201|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK152363|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK152548|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK152903|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK153043|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	BC038486|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)
mm9_v1_chrX_-_6952873_6952997	0.0272157	GLI1..3.p2	BC137612|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome	AK028249|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome	NM_019461|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome
mm9_v1_chr7_+_107327192_107327214	0.0269382	GLI1..3.p2	NM_001190870|Kcne3|57442|potassium voltage-gated channel, Isk-related subfamily, gene 3	NM_001190871|Kcne3|57442|potassium voltage-gated channel, Isk-related subfamily, gene 3	NM_001190950|Kcne3|57442|potassium voltage-gated channel, Isk-related subfamily, gene 3	NM_020574|Kcne3|57442|potassium voltage-gated channel, Isk-related subfamily, gene 3	AK008744|Kcne3|57442|potassium voltage-gated channel, Isk-related subfamily, gene 3	DQ832280|Kcne3|57442|potassium voltage-gated channel, Isk-related subfamily, gene 3	BC004629|Kcne3|57442|potassium voltage-gated channel, Isk-related subfamily, gene 3
mm9_v1_chr7_+_3646102_3646199	0.026426	GLI1..3.p2	NM_024168|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)	AK053916|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)	BC091756|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)	AK010759|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)	BC002205|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)	AK013253|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)
mm9_v1_chr7_+_51036423_51036448	0.0259137	GLI1..3.p2	NM_133712|Klk10|69540|kallikrein related-peptidase 10	AK009000|Klk10|69540|kallikrein related-peptidase 10	BC002100|Klk10|69540|kallikrein related-peptidase 10
mm9_v1_chr10_-_26095736_26095813	0.0256813	GLI1..3.p2	BC082309|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)	AK031398|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)
mm9_v1_chr11_+_60541880_60542010	0.0252868	GLI1..3.p2	NM_001009927|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	AK156917|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	AK171444|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	BC088984|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)
mm9_v1_chr3_+_94964364_94964444	0.0252402	GLI1..3.p2	AK165085|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	BC083186|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	BC059007|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	BC051979|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	AK031131|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
mm9_v1_chr13_+_89680393_89680435	0.0251142	GLI1..3.p2	BC066853|Hapln1|12950|hyaluronan and proteoglycan link protein 1
mm9_v1_chr9_+_20467843_20467946	0.0249009	GLI1..3.p2	AK185654|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
mm9_v1_chr3_+_96073622_96073646	0.0243112	GLI1..3.p2	NM_175666|Hist2h2bb|319189|histone cluster 2, H2bb	BC019122|Hist2h2bb|319189|histone cluster 2, H2bb
mm9_v1_chr7_+_127778702_127778797	0.0241511	GLI1..3.p2	NM_025899|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK005151|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK003975|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK004492|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	BC003423|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK088103|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK167377|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK077583|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK075856|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2
mm9_v1_chr4_-_118216327_118216339	0.0239895	GLI1..3.p2	NM_172383|Tmem125|230678|transmembrane protein 125	AK050146|Tmem125|230678|transmembrane protein 125
mm9_v1_chr9_-_106691395_106691543	0.0236802	GLI1..3.p2	BC133714|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK155151|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK090250|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK083903|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	NM_030730|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)
mm9_v1_chr19_-_12576485_12576634	0.0231215	GLI1..3.p2	NM_172442|Dtx4|207521|deltex 4 homolog (Drosophila)
mm9_v1_chr9_-_100935259_100935321	0.0227653	GLI1..3.p2	BC026531|Pccb|66904|propionyl Coenzyme A carboxylase, beta polypeptide	AF327060|Pccb|66904|propionyl Coenzyme A carboxylase, beta polypeptide	BC037082|Pccb|66904|propionyl Coenzyme A carboxylase, beta polypeptide	BC055946|Pccb|66904|propionyl Coenzyme A carboxylase, beta polypeptide	AK050366|Pccb|66904|propionyl Coenzyme A carboxylase, beta polypeptide	AK004976|Pccb|66904|propionyl Coenzyme A carboxylase, beta polypeptide	NM_025835|Pccb|66904|propionyl Coenzyme A carboxylase, beta polypeptide	AK134437|Pccb|66904|propionyl Coenzyme A carboxylase, beta polypeptide
mm9_v1_chr11_-_95926302_95926380	0.0225156	GLI1..3.p2	BC027266|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	AK168942|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	BC054412|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)
mm9_v1_chrX_-_151582391_151582391	0.0224941	GLI1..3.p2	BC100353|1700042B14Rik|73347|RIKEN cDNA 1700042B14 gene	NM_001081671|1700042B14Rik|73347|RIKEN cDNA 1700042B14 gene
mm9_v1_chr19_-_23522811_23522929	0.0216464	GLI1..3.p2	AK035566|Mamdc2|71738|MAM domain containing 2	NM_174857|Mamdc2|71738|MAM domain containing 2	BC042773|Mamdc2|71738|MAM domain containing 2	AK154219|Mamdc2|71738|MAM domain containing 2	AK004794|Mamdc2|71738|MAM domain containing 2
mm9_v1_chrX_+_160811667_160811697	0.0215937	GLI1..3.p2	D89628|Figf|14205|c-fos induced growth factor	BC030037|Figf|14205|c-fos induced growth factor	BC062809|Figf|14205|c-fos induced growth factor
mm9_v1_chr16_+_13265171_13265171	0.0213512	GLI1..3.p2	BC028459|Mkl2|239719|MKL/myocardin-like 2	NM_181860|Mkl2|239719|MKL/myocardin-like 2
mm9_v1_chr11_-_78311204_78311255	0.0201372	GLI1..3.p2	BC058534|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	BC080850|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	NM_001168521|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	NM_172795|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1
mm9_v1_chr2_-_63022140_63022343	0.0201027	GLI1..3.p2	AJ291608|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK052366|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK043768|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK034003|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	NM_133207|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm9_v1_chr10_+_80261442_80261516	0.0195106	GLI1..3.p2	NM_013651|Sf3a2|20222|splicing factor 3a, subunit 2	BC052697|Sf3a2|20222|splicing factor 3a, subunit 2
mm9_v1_chr6_+_86145220_86145449	0.0193966	GLI1..3.p2	AK010785|Tgfa|21802|transforming growth factor alpha	AK165017|Tgfa|21802|transforming growth factor alpha	NM_031199|Tgfa|21802|transforming growth factor alpha	AK166321|Tgfa|21802|transforming growth factor alpha	U65016|Tgfa|21802|transforming growth factor alpha	BC132185|Tgfa|21802|transforming growth factor alpha	BC132211|Tgfa|21802|transforming growth factor alpha
mm9_v1_chr11_+_74644479_74644499	0.0192623	GLI1..3.p2	Y07609|Mnt|17428|max binding protein	BC054534|Mnt|17428|max binding protein
mm9_v1_chr6_+_127403631_127403740	0.0192236	GLI1..3.p2	AK133697|Parp11|101187|poly (ADP-ribose) polymerase family, member 11	BC040269|Parp11|101187|poly (ADP-ribose) polymerase family, member 11	NM_181402|Parp11|101187|poly (ADP-ribose) polymerase family, member 11
mm9_v1_chr6_-_125115619_125115626	0.0183548	GLI1..3.p2	AK160753|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK164415|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	GU214026|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK002273|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK081405|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK140794|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK146435|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK147738|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK147891|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK160399|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK168217|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase
mm9_v1_chrX_-_70163744_70163754	0.0182862	GLI1..3.p2	AK151033|Cetn2|26370|centrin 2
mm9_v1_chr17_-_28536455_28536544	0.0154321	GLI1..3.p2	AK199818|Fkbp5|14229|FK506 binding protein 5
mm9_v1_chr2_-_181327165_181327210	0.0153578	GLI1..3.p2	AK129308|Znf512b|269401|zinc finger protein 512B	NM_001164597|Znf512b|269401|zinc finger protein 512B
mm9_v1_chr11_-_59015886_59015891	0.0151397	GLI1..3.p2	AK017172|2610507I01Rik|72203|RIKEN cDNA 2610507I01 gene	AK162965|2610507I01Rik|72203|RIKEN cDNA 2610507I01 gene
mm9_v1_chr11_+_70353656_70353766	0.0150417	GLI1..3.p2	NM_008876|Pld2|18806|phospholipase D2
mm9_v1_chr9_-_119603442_119603477	0.0149244	GLI1..3.p2	AY538273|Scn10a|20264|sodium channel, voltage-gated, type X, alpha	NM_009134|Scn10a|20264|sodium channel, voltage-gated, type X, alpha	Y09108|Scn10a|20264|sodium channel, voltage-gated, type X, alpha
mm9_v1_chr16_-_90144013_90144100	0.0140324	GLI1..3.p2	BC065126|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	AK043966|Tiam1|21844|T-cell lymphoma invasion and metastasis 1
mm9_v1_chr7_+_105983591_105983626	0.0139945	GLI1..3.p2	AK138967|Wnt11|22411|wingless-related MMTV integration site 11
mm9_v1_chr13_+_33753273_33753343	0.0135974	GLI1..3.p2	AK136270|Serpinb6d|238568|serine (or cysteine) peptidase inhibitor, clade B, member 6d	NM_001076790|Serpinb6d|238568|serine (or cysteine) peptidase inhibitor, clade B, member 6d	BC147559|Serpinb6d|238568|serine (or cysteine) peptidase inhibitor, clade B, member 6d
mm9_v1_chr4_+_128970999_128971109	0.01307	GLI1..3.p2	AK004279|Sync|68828|syncoilin
mm9_v1_chr10_+_42221829_42221920	0.0130187	GLI1..3.p2	AK013183|Snx3|54198|sorting nexin 3	NM_017472|Snx3|54198|sorting nexin 3
mm9_v1_chr16_-_5222390_5222400	0.0122831	GLI1..3.p2	NM_001033220|AU021092|239691|expressed sequence AU021092
mm9_v1_chr10_-_75236129_75236158	0.0122016	GLI1..3.p2	AK144193|Ddt|13202|D-dopachrome tautomerase
mm9_v1_chr17_-_33276627_33276627	0.0119874	GLI1..3.p2	AK077016|Morc2b|240069|microrchidia 2B	NM_177719|Morc2b|240069|microrchidia 2B
mm9_v1_chr3_+_146515330_146515360	0.0119726	GLI1..3.p2	NM_027594|Ttll7|70892|tubulin tyrosine ligase-like family, member 7
mm9_v1_chr4_+_138281239_138281239	0.0119493	GLI1..3.p2	NM_008868|Pla2g2c|18781|phospholipase A2, group IIC
mm9_v1_chr5_+_125956221_125956249	0.011861	GLI1..3.p2	AK019063|Aacs|78894|acetoacetyl-CoA synthetase	AK044017|Aacs|78894|acetoacetyl-CoA synthetase	AK147189|Aacs|78894|acetoacetyl-CoA synthetase	AK150266|Aacs|78894|acetoacetyl-CoA synthetase	AK165418|Aacs|78894|acetoacetyl-CoA synthetase	AK165457|Aacs|78894|acetoacetyl-CoA synthetase	AK170120|Aacs|78894|acetoacetyl-CoA synthetase	AK170653|Aacs|78894|acetoacetyl-CoA synthetase	AK170856|Aacs|78894|acetoacetyl-CoA synthetase	NM_030210|Aacs|78894|acetoacetyl-CoA synthetase
mm9_v1_chr5_-_134790544_134790615	0.0111412	GLI1..3.p2	AF017085|Gtf2i|14886|general transcription factor II I	AY030290|Gtf2i|14886|general transcription factor II I	AY030291|Gtf2i|14886|general transcription factor II I	AY030292|Gtf2i|14886|general transcription factor II I	AY030293|Gtf2i|14886|general transcription factor II I	AK147201|Gtf2i|14886|general transcription factor II I	BC053044|Gtf2i|14886|general transcription factor II I	NM_001080746|Gtf2i|14886|general transcription factor II I	NM_001080747|Gtf2i|14886|general transcription factor II I	NM_001080748|Gtf2i|14886|general transcription factor II I	NM_001080749|Gtf2i|14886|general transcription factor II I	NM_010365|Gtf2i|14886|general transcription factor II I
mm9_v1_chr4_+_100449274_100449299	0.0109847	GLI1..3.p2	AK080923|Cachd1|320508|cache domain containing 1	BC058676|Cachd1|320508|cache domain containing 1	NM_198037|Cachd1|320508|cache domain containing 1
mm9_v1_chr7_-_70357361_70357454	0.0108197	GLI1..3.p2	AY574266|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AF225980|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AK157809|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	L37663|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	NM_007390|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AK034208|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7
mm9_v1_chr2_+_75542804_75542924	0.0103802	GLI1..3.p2	AK053216|E030042O20Rik|320474|RIKEN cDNA E030042O20 gene	AK078602|E030042O20Rik|320474|RIKEN cDNA E030042O20 gene
mm9_v1_chr2_-_32630849_32630902	0.0103762	GLI1..3.p2	BC140991|Ttc16|338348|tetratricopeptide repeat domain 16	BC145064|Ttc16|338348|tetratricopeptide repeat domain 16	AK028040|Ttc16|338348|tetratricopeptide repeat domain 16	AK160435|Ttc16|338348|tetratricopeptide repeat domain 16	NM_177384|Ttc16|338348|tetratricopeptide repeat domain 16
mm9_v1_chr2_-_130250376_130250436	0.0100728	GLI1..3.p2	NM_001114541|Fam113a|319513|family with sequence similarity 113, member A	BC064802|Fam113a|319513|family with sequence similarity 113, member A	AK031469|Fam113a|319513|family with sequence similarity 113, member A
mm9_v1_chr11_-_101087738_101087767	0.00985803	GLI1..3.p2	AK045374|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	AK138942|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	U60453|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	AK164192|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	AK140694|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	NM_007970|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)
mm9_v1_chr7_-_5008717_5008738	0.00969002	GLI1..3.p2	
mm9_v1_chr2_-_89862220_89862220	0.00950362	GLI1..3.p2	NM_021368|Olfr1264|258206|olfactory receptor 1264
mm9_v1_chr11_+_101186376_101186385	0.00884423	GLI1..3.p2	AF350445|Aoc2|237940|amine oxidase, copper containing 2 (retina-specific)	NM_178932|Aoc2|237940|amine oxidase, copper containing 2 (retina-specific)	BC150843|Aoc2|237940|amine oxidase, copper containing 2 (retina-specific)	BC150848|Aoc2|237940|amine oxidase, copper containing 2 (retina-specific)
mm9_v1_chr2_+_24132788_24133018	0.00828912	GLI1..3.p2	AK008977|Il1f5|54450|interleukin 1 family, member 5 (delta)	AK009741|Il1f5|54450|interleukin 1 family, member 5 (delta)	AK076547|Il1f5|54450|interleukin 1 family, member 5 (delta)	NM_019451|Il1f5|54450|interleukin 1 family, member 5 (delta)	AK010020|Il1f5|54450|interleukin 1 family, member 5 (delta)	AF200495|Il1f5|54450|interleukin 1 family, member 5 (delta)	AJ250429|Il1f5|54450|interleukin 1 family, member 5 (delta)	BC132600|Il1f5|54450|interleukin 1 family, member 5 (delta)	BC132602|Il1f5|54450|interleukin 1 family, member 5 (delta)	AF230378|Il1f5|54450|interleukin 1 family, member 5 (delta)
mm9_v1_chr7_-_148042137_148042161	0.00801356	GLI1..3.p2	AF003999|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like
mm9_v1_chr19_-_10956160_10956239	0.00740783	GLI1..3.p2	BC023901|Tmem109|68539|transmembrane protein 109	AK165990|Tmem109|68539|transmembrane protein 109	BC025033|Tmem109|68539|transmembrane protein 109	AK150779|Tmem109|68539|transmembrane protein 109	AK151850|Tmem109|68539|transmembrane protein 109	AK152419|Tmem109|68539|transmembrane protein 109	BC025815|Tmem109|68539|transmembrane protein 109	BC022997|Tmem109|68539|transmembrane protein 109	NM_134142|Tmem109|68539|transmembrane protein 109	AK049148|Tmem109|68539|transmembrane protein 109
mm9_v1_chr9_-_96371668_96371747	0.00687502	GLI1..3.p2	AK208401|Rnf7|19823|ring finger protein 7
mm9_v1_chr3_+_54496726_54496818	0.00671503	GLI1..3.p2	AK171787|Fam48a|56790|family with sequence similarity 48, member A	AK045110|Fam48a|56790|family with sequence similarity 48, member A	AK050619|Fam48a|56790|family with sequence similarity 48, member A	AK083379|Fam48a|56790|family with sequence similarity 48, member A
mm9_v1_chr8_+_26830480_26830683	0.00636839	GLI1..3.p2	NM_028000|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC023111|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	AK144593|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC089556|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC062173|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	AK009455|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC099489|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B
mm9_v1_chr5_+_125956283_125956442	0.00635081	GLI1..3.p2	AB054122|Aacs|78894|acetoacetyl-CoA synthetase	AK034184|Aacs|78894|acetoacetyl-CoA synthetase	AB056114|Aacs|78894|acetoacetyl-CoA synthetase	AK206715|Aacs|78894|acetoacetyl-CoA synthetase
mm9_v1_chr17_-_25634159_25634232	0.00630957	GLI1..3.p2	AK133767|Sstr5|20609|somatostatin receptor 5	AK133609|Sstr5|20609|somatostatin receptor 5	BC145943|Sstr5|20609|somatostatin receptor 5	NM_001191008|Sstr5|20609|somatostatin receptor 5	NM_011425|Sstr5|20609|somatostatin receptor 5
mm9_v1_chr2_+_144194646_144194805	0.00613431	GLI1..3.p2	NM_001164813|Pet117|100048644|cytochrome c oxidase assembly factor-like	BC033464|Csrp2bp|228714|cysteine and glycine-rich protein 2 binding protein	NM_001166640|Csrp2bp|228714|cysteine and glycine-rich protein 2 binding protein	BC031563|Csrp2bp|228714|cysteine and glycine-rich protein 2 binding protein	NM_181417|Csrp2bp|228714|cysteine and glycine-rich protein 2 binding protein
mm9_v1_chr3_+_118265066_118265156	0.00478357	GLI1..3.p2	AK149426|Dpyd|99586|dihydropyrimidine dehydrogenase	NM_170778|Dpyd|99586|dihydropyrimidine dehydrogenase	BC039699|Dpyd|99586|dihydropyrimidine dehydrogenase
mm9_v1_chr3_-_88259594_88259600	0.00472345	GLI1..3.p2	BC025800|Sema4a|20351|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm9_v1_chr11_+_75300330_75300364	0.00239484	GLI1..3.p2	BC093481|Prpf8|192159|pre-mRNA processing factor 8	AK144232|Prpf8|192159|pre-mRNA processing factor 8
mm9_v1_chr16_-_90810621_90810657	0.00237756	GLI1..3.p2	AK017495|Urb1|207932|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	AK050735|Urb1|207932|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	NM_029497|Urb1|207932|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
mm9_v1_chr2_-_91790504_91790533	0.00190802	GLI1..3.p2	AK087503|Dgkz|104418|diacylglycerol kinase zeta	NM_001166597|Dgkz|104418|diacylglycerol kinase zeta
mm9_v1_chr17_-_25929201_25929366	0.00119846	GLI1..3.p2	AK132031|Fam173a|214917|family with sequence similarity 173, member A	BC096050|Fam173a|214917|family with sequence similarity 173, member A	NM_145410|Fam173a|214917|family with sequence similarity 173, member A	AK162337|Fam173a|214917|family with sequence similarity 173, member A	AK146214|Fam173a|214917|family with sequence similarity 173, member A	BC008155|Fam173a|214917|family with sequence similarity 173, member A
mm9_v1_chr11_+_53270779_53270814	0.00067098	GLI1..3.p2	AK134332|Shroom1|71774|shroom family member 1	AK004934|Shroom1|71774|shroom family member 1	BC031598|Shroom1|71774|shroom family member 1
mm9_v1_chr17_-_56249206_56249228	0.000316394	GLI1..3.p2	NM_020568|Plin4|57435|perilipin 4	AF064748|Plin4|57435|perilipin 4
mm9_v1_chr14_-_51875785_51875786	0.000249608	GLI1..3.p2	BC020070|Ear11|93726|eosinophil-associated, ribonuclease A family, member 11	BC027557|Ear11|93726|eosinophil-associated, ribonuclease A family, member 11	NM_053113|Ear11|93726|eosinophil-associated, ribonuclease A family, member 11
