mm9_v1_chr11_-_90252228_90252237	17.553	GUCAGUU	NM_172563|Hlf|217082|hepatic leukemia factor
mm9_v1_chr2_+_103809709_103809717	12.589	GUCAGUU	NM_001142336|Lmo2|16909|LIM domain only 2
mm9_v1_chr2_+_103798150_103798151	11.4724	GUCAGUU	NM_001142337|Lmo2|16909|LIM domain only 2
mm9_v1_chr7_+_129432585_129432762	11.303	GUCAGUU	NM_008855|Prkcb|18751|protein kinase C, beta	AK051862|Prkcb|18751|protein kinase C, beta
mm9_v1_chr7_+_107376116_107376219	11.0169	GUCAGUU	NM_027629|Pgm2l1|70974|phosphoglucomutase 2-like 1	AK039189|Pgm2l1|70974|phosphoglucomutase 2-like 1	AK040513|Pgm2l1|70974|phosphoglucomutase 2-like 1	BC076571|Pgm2l1|70974|phosphoglucomutase 2-like 1
mm9_v1_chr2_+_103810274_103810481	10.3046	GUCAGUU	AK013416|Lmo2|16909|LIM domain only 2	BC057880|Lmo2|16909|LIM domain only 2	NM_001142335|Lmo2|16909|LIM domain only 2	NM_008505|Lmo2|16909|LIM domain only 2
mm9_v1_chr19_+_37509290_37509343	9.6557	GUCAGUU	AK014111|Hhex|15242|hematopoietically expressed homeobox	AK033664|Hhex|15242|hematopoietically expressed homeobox	AK149553|Hhex|15242|hematopoietically expressed homeobox	NM_008245|Hhex|15242|hematopoietically expressed homeobox	BC057986|Hhex|15242|hematopoietically expressed homeobox
mm9_v1_chr1_+_37356722_37356738	9.58119	GUCAGUU	AK162581|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	NM_030266|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I
mm9_v1_chr10_+_92623587_92623703	8.69356	GUCAGUU	AK078325|Cdk17|237459|cyclin-dependent kinase 17	NM_146239|Cdk17|237459|cyclin-dependent kinase 17	BC064815|Cdk17|237459|cyclin-dependent kinase 17
mm9_v1_chr1_+_162836541_162836569	8.26543	GUCAGUU	NM_001024952|Rc3h1|381305|RING CCCH (C3H) domains 1	AK139648|Rc3h1|381305|RING CCCH (C3H) domains 1
mm9_v1_chr3_+_84619399_84619498	8.13492	GUCAGUU	BC085184|Fbxw7|50754|F-box and WD-40 domain protein 7	BC060620|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177773|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr3_+_84668066_84668066	7.70657	GUCAGUU	BC066093|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177774|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr2_+_127161893_127161939	6.83289	GUCAGUU	AK088059|Dusp2|13537|dual specificity phosphatase 2	AK134067|Dusp2|13537|dual specificity phosphatase 2	NM_010090|Dusp2|13537|dual specificity phosphatase 2	BC048696|Dusp2|13537|dual specificity phosphatase 2	L11330|Dusp2|13537|dual specificity phosphatase 2
mm9_v1_chr9_-_66767436_66767566	6.69912	GUCAGUU	AB232601|Rab8b|235442|RAB8B, member RAS oncogene family	AK031251|Rab8b|235442|RAB8B, member RAS oncogene family	BC157974|Rab8b|235442|RAB8B, member RAS oncogene family	AK051218|Rab8b|235442|RAB8B, member RAS oncogene family	AK084650|Rab8b|235442|RAB8B, member RAS oncogene family	AK155621|Rab8b|235442|RAB8B, member RAS oncogene family	BC059208|Rab8b|235442|RAB8B, member RAS oncogene family	NM_173413|Rab8b|235442|RAB8B, member RAS oncogene family
mm9_v1_chr3_-_119486305_119486325	6.6458	GUCAGUU	AK135738|Ptbp2|56195|polypyrimidine tract binding protein 2	NM_019550|Ptbp2|56195|polypyrimidine tract binding protein 2
mm9_v1_chr2_-_7002344_7002370	6.51127	GUCAGUU	NM_001110229|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110230|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160292|Celf2|14007|CUGBP, Elav-like family member 2	AK159996|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr2_-_73224394_73224535	6.2741	GUCAGUU	AK090081|Gpr155|68526|G protein-coupled receptor 155	BC115698|Gpr155|68526|G protein-coupled receptor 155	AK089436|Gpr155|68526|G protein-coupled receptor 155	HM161763|Gpr155|68526|G protein-coupled receptor 155	HM161764|Gpr155|68526|G protein-coupled receptor 155	HM161765|Gpr155|68526|G protein-coupled receptor 155	HM161766|Gpr155|68526|G protein-coupled receptor 155	NM_001080707|Gpr155|68526|G protein-coupled receptor 155	NM_001190297|Gpr155|68526|G protein-coupled receptor 155
mm9_v1_chr4_-_86876328_86876443	6.14162	GUCAGUU	AK038800|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK136058|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	NM_172426|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr10_+_89336253_89336253	6.0674	GUCAGUU	NM_001128086|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr4_+_122860705_122860828	5.81503	GUCAGUU	AK032591|Hpcal4|170638|hippocalcin-like 4	NM_174998|Hpcal4|170638|hippocalcin-like 4
mm9_v1_chr5_+_97426665_97426877	5.69593	GUCAGUU	AY050249|Bmp2k|140780|BMP2 inducible kinase	NM_080708|Bmp2k|140780|BMP2 inducible kinase	AK046752|Bmp2k|140780|BMP2 inducible kinase
mm9_v1_chr2_-_66278870_66278908	5.52235	GUCAGUU	AK046001|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	AK134744|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	NM_018733|Scn1a|20265|sodium channel, voltage-gated, type I, alpha
mm9_v1_chr2_-_7317824_7317824	5.26361	GUCAGUU	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr2_-_7317513_7317626	5.21994	GUCAGUU	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr2_+_65508501_65508501	5.18083	GUCAGUU	NM_001099298|Scn2a1|110876|sodium channel, voltage-gated, type II, alpha 1
mm9_v1_chr9_+_109834266_109834307	5.12339	GUCAGUU	NM_008633|Mtap4|17758|microtubule-associated protein 4	AK046825|Mtap4|17758|microtubule-associated protein 4
mm9_v1_chr8_+_90818102_90818135	5.05914	GUCAGUU	NM_001037724|Adcy7|11513|adenylate cyclase 7	AK155831|Adcy7|11513|adenylate cyclase 7	AK154652|Adcy7|11513|adenylate cyclase 7
mm9_v1_chr2_+_4480799_4480871	5.03565	GUCAGUU	AK077327|Frmd4a|209630|FERM domain containing 4A	NM_001177844|Frmd4a|209630|FERM domain containing 4A	AK148414|Frmd4a|209630|FERM domain containing 4A	AK029073|Frmd4a|209630|FERM domain containing 4A	AK171532|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr8_+_90812964_90813045	4.94418	GUCAGUU	NM_001037723|Adcy7|11513|adenylate cyclase 7	AK154262|Adcy7|11513|adenylate cyclase 7	AK138911|Adcy7|11513|adenylate cyclase 7
mm9_v1_chr2_+_136539143_136539198	4.87169	GUCAGUU	NM_011428|Snap25|20614|synaptosomal-associated protein 25	AK078038|Snap25|20614|synaptosomal-associated protein 25
mm9_v1_chr1_+_176431933_176432011	4.82224	GUCAGUU	BC094606|Fmn2|54418|formin 2	NM_019445|Fmn2|54418|formin 2	AF218940|Fmn2|54418|formin 2
mm9_v1_chr4_+_124419115_124419126	4.80134	GUCAGUU	AY007563|Inpp5b|16330|inositol polyphosphate-5-phosphatase B	BC028864|Inpp5b|16330|inositol polyphosphate-5-phosphatase B	NM_008385|Inpp5b|16330|inositol polyphosphate-5-phosphatase B
mm9_v1_chr15_-_98638348_98638375	4.77043	GUCAGUU	AK158894|Ddn|13199|dendrin	NM_001013741|Ddn|13199|dendrin
mm9_v1_chr8_+_90806890_90806890	4.76032	GUCAGUU	AK155646|Adcy7|11513|adenylate cyclase 7	NM_001109756|Adcy7|11513|adenylate cyclase 7
mm9_v1_chr6_+_65621583_65621630	4.72913	GUCAGUU	AK049802|A930038C07Rik|68169|RIKEN cDNA A930038C07 gene	AK029210|A930038C07Rik|68169|RIKEN cDNA A930038C07 gene	NM_172399|A930038C07Rik|68169|RIKEN cDNA A930038C07 gene	BC047154|A930038C07Rik|68169|RIKEN cDNA A930038C07 gene
mm9_v1_chr5_+_151476361_151476427	4.70654	GUCAGUU	AY102267|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)	NM_175310|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
mm9_v1_chr1_-_25886551_25886551	4.63398	GUCAGUU	BC099951|Bai3|210933|brain-specific angiogenesis inhibitor 3	NM_175642|Bai3|210933|brain-specific angiogenesis inhibitor 3
mm9_v1_chrX_+_45499599_45499837	4.61787	GUCAGUU	AK156202|Sash3|74131|SAM and SH3 domain containing 3	AK004734|Sash3|74131|SAM and SH3 domain containing 3	NM_028773|Sash3|74131|SAM and SH3 domain containing 3	AK171017|Sash3|74131|SAM and SH3 domain containing 3	BC064734|Sash3|74131|SAM and SH3 domain containing 3	AJ306422|Sash3|74131|SAM and SH3 domain containing 3
mm9_v1_chr8_+_13907735_13907819	4.56133	GUCAGUU	AK008027|Fbxo25|66822|F-box protein 25	AK134722|Fbxo25|66822|F-box protein 25	AK013645|Fbxo25|66822|F-box protein 25	AK018626|Fbxo25|66822|F-box protein 25	NM_025785|Fbxo25|66822|F-box protein 25	BC014749|Fbxo25|66822|F-box protein 25
mm9_v1_chr2_-_6805937_6806041	4.43314	GUCAGUU	AK042749|Celf2|14007|CUGBP, Elav-like family member 2	AK164112|Celf2|14007|CUGBP, Elav-like family member 2	AK052102|Celf2|14007|CUGBP, Elav-like family member 2	AK135166|Celf2|14007|CUGBP, Elav-like family member 2	BC026856|Celf2|14007|CUGBP, Elav-like family member 2	AF090697|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110228|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160293|Celf2|14007|CUGBP, Elav-like family member 2	NM_010160|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr14_+_61253517_61253607	4.43213	GUCAGUU	NM_001033272|Spata13|219140|spermatogenesis associated 13
mm9_v1_chr6_-_112897259_112897274	4.41301	GUCAGUU	AK045508|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	AK051262|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	NM_080448|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3
mm9_v1_chr6_-_57485419_57485488	4.39113	GUCAGUU	BC092238|Ppm1k|243382|protein phosphatase 1K (PP2C domain containing)	NM_175523|Ppm1k|243382|protein phosphatase 1K (PP2C domain containing)	AK044610|Ppm1k|243382|protein phosphatase 1K (PP2C domain containing)
mm9_v1_chr2_+_6243767_6243980	4.38992	GUCAGUU	AK155073|Usp6nl|98910|USP6 N-terminal like	NM_001080548|Usp6nl|98910|USP6 N-terminal like	AK129037|Usp6nl|98910|USP6 N-terminal like	AK084045|Usp6nl|98910|USP6 N-terminal like
mm9_v1_chr10_+_90039435_90039495	4.37523	GUCAGUU	AK032211|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177396|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177398|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_181398|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK163750|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK132228|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK019361|Ipw|16353|imprinted gene in the Prader-Willi syndrome region	AK049899|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr10_+_90038471_90038471	4.33527	GUCAGUU	BC098373|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177397|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr17_+_78599556_78599594	4.31559	GUCAGUU	NM_015800|Crim1|50766|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm9_v1_chr6_+_53989925_53989975	4.30059	GUCAGUU	AK030336|Chn2|69993|chimerin (chimaerin) 2	NM_001163640|Chn2|69993|chimerin (chimaerin) 2
mm9_v1_chr10_+_52410306_52410508	4.28618	GUCAGUU	NM_178675|Slc35f1|215085|solute carrier family 35, member F1	AK038601|Slc35f1|215085|solute carrier family 35, member F1	AK053426|Slc35f1|215085|solute carrier family 35, member F1	AK139331|Slc35f1|215085|solute carrier family 35, member F1	AK048957|Slc35f1|215085|solute carrier family 35, member F1	AK165021|Slc35f1|215085|solute carrier family 35, member F1	AK053545|Slc35f1|215085|solute carrier family 35, member F1	AK083768|Slc35f1|215085|solute carrier family 35, member F1	AK166268|Slc35f1|215085|solute carrier family 35, member F1	BC059075|Slc35f1|215085|solute carrier family 35, member F1	AK163806|Slc35f1|215085|solute carrier family 35, member F1
mm9_v1_chr8_+_90796301_90796301	4.28254	GUCAGUU	NM_007406|Adcy7|11513|adenylate cyclase 7	U12919|Adcy7|11513|adenylate cyclase 7
mm9_v1_chr2_+_6273778_6273781	4.25806	GUCAGUU	BC051184|Usp6nl|98910|USP6 N-terminal like	NM_181399|Usp6nl|98910|USP6 N-terminal like
mm9_v1_chr6_-_58857000_58857134	4.24647	GUCAGUU	AB041556|Nap1l5|58243|nucleosome assembly protein 1-like 5	BC046332|Nap1l5|58243|nucleosome assembly protein 1-like 5	NM_021432|Nap1l5|58243|nucleosome assembly protein 1-like 5
mm9_v1_chr13_+_83643032_83643032	4.22523	GUCAGUU	NM_001170537|Mef2c|17260|myocyte enhancer factor 2C	NM_025282|Mef2c|17260|myocyte enhancer factor 2C
mm9_v1_chr2_-_65405546_65405588	4.22153	GUCAGUU	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr11_-_4847968_4848115	4.16712	GUCAGUU	AK122388|Nefh|380684|neurofilament, heavy polypeptide	NM_010904|Nefh|380684|neurofilament, heavy polypeptide	M35131|Nefh|380684|neurofilament, heavy polypeptide
mm9_v1_chr11_-_88579517_88579542	4.16361	GUCAGUU	AK156439|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049637|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049688|Msi2|76626|Musashi homolog 2 (Drosophila)	NM_054043|Msi2|76626|Musashi homolog 2 (Drosophila)
mm9_v1_chr2_+_4073908_4073934	4.09713	GUCAGUU	NM_172475|Frmd4a|209630|FERM domain containing 4A	AK034706|Frmd4a|209630|FERM domain containing 4A	BC058672|Frmd4a|209630|FERM domain containing 4A	AK163887|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr18_+_5591869_5591894	4.08264	GUCAGUU	AK014114|Zeb1|21417|zinc finger E-box binding homeobox 1	U26259|Zeb1|21417|zinc finger E-box binding homeobox 1	BC139768|Zeb1|21417|zinc finger E-box binding homeobox 1	BC139769|Zeb1|21417|zinc finger E-box binding homeobox 1	D76432|Zeb1|21417|zinc finger E-box binding homeobox 1	NM_011546|Zeb1|21417|zinc finger E-box binding homeobox 1	BC090987|Zeb1|21417|zinc finger E-box binding homeobox 1	AK135371|Zeb1|21417|zinc finger E-box binding homeobox 1
mm9_v1_chr2_-_104250490_104250490	4.07754	GUCAGUU	NM_001033347|D430041D05Rik|241589|RIKEN cDNA D430041D05 gene
mm9_v1_chr1_-_158869401_158869517	4.04567	GUCAGUU	AK019543|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_001159966|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2
mm9_v1_chr9_+_64658817_64658817	4.01047	GUCAGUU	NM_001162917|Dennd4a|102442|DENN/MADD domain containing 4A
mm9_v1_chr6_-_24905939_24906124	3.99985	GUCAGUU	BC147241|Tmem229a|319832|transmembrane protein 229A	BC147242|Tmem229a|319832|transmembrane protein 229A	AK140056|Tmem229a|319832|transmembrane protein 229A	AK087465|Tmem229a|319832|transmembrane protein 229A	NM_177013|Tmem229a|319832|transmembrane protein 229A
mm9_v1_chr13_+_109444370_109444370	3.94519	GUCAGUU	AF536978|Pde4d|238871|phosphodiesterase 4D, cAMP specific	NM_011056|Pde4d|238871|phosphodiesterase 4D, cAMP specific
mm9_v1_chr15_+_66409094_66409201	3.9423	GUCAGUU	AK047044|Phf20l1|239510|PHD finger protein 20-like 1	AK032638|Phf20l1|239510|PHD finger protein 20-like 1	NM_001081409|Phf20l1|239510|PHD finger protein 20-like 1	BC082777|Phf20l1|239510|PHD finger protein 20-like 1	BC052212|Phf20l1|239510|PHD finger protein 20-like 1	BC061492|Phf20l1|239510|PHD finger protein 20-like 1
mm9_v1_chr12_+_56256090_56256090	3.89168	GUCAGUU	AK136033|Srp54b|665155|signal recognition particle 54B	NM_001100109|Srp54b|665155|signal recognition particle 54B
mm9_v1_chr11_+_59356187_59356309	3.84744	GUCAGUU	AY495376|Nlrp3|216799|NLR family, pyrin domain containing 3	NM_145827|Nlrp3|216799|NLR family, pyrin domain containing 3	BC116174|Nlrp3|216799|NLR family, pyrin domain containing 3	BC116175|Nlrp3|216799|NLR family, pyrin domain containing 3	AY495377|Nlrp3|216799|NLR family, pyrin domain containing 3
mm9_v1_chr2_+_4322020_4322021	3.79217	GUCAGUU	BC082808|Frmd4a|209630|FERM domain containing 4A	NM_001177843|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr2_-_72818502_72818502	3.75546	GUCAGUU	BC079874|Sp3|20687|trans-acting transcription factor 3	NM_001018042|Sp3|20687|trans-acting transcription factor 3
mm9_v1_chr2_+_48805027_48805131	3.68333	GUCAGUU	NM_029924|Mbd5|109241|methyl-CpG binding domain protein 5	AK155574|Mbd5|109241|methyl-CpG binding domain protein 5
mm9_v1_chr18_-_70212948_70213022	3.65247	GUCAGUU	BC032928|Rab27b|80718|RAB27b, member RAS oncogene family	AB067775|Rab27b|80718|RAB27b, member RAS oncogene family	AF328893|Rab27b|80718|RAB27b, member RAS oncogene family	BC018443|Rab27b|80718|RAB27b, member RAS oncogene family	NM_030554|Rab27b|80718|RAB27b, member RAS oncogene family
mm9_v1_chr6_+_54222814_54222856	3.60231	GUCAGUU	BC051139|Chn2|69993|chimerin (chimaerin) 2	NM_023543|Chn2|69993|chimerin (chimaerin) 2	BC141060|Chn2|69993|chimerin (chimaerin) 2
mm9_v1_chr4_-_86873866_86873867	3.579	GUCAGUU	NM_001110240|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC115867|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC116637|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr13_+_91600662_91600791	3.44772	GUCAGUU	BC002176|Ssbp2|66970|single-stranded DNA binding protein 2	NM_024186|Ssbp2|66970|single-stranded DNA binding protein 2	NM_024272|Ssbp2|66970|single-stranded DNA binding protein 2	AK133699|Ssbp2|66970|single-stranded DNA binding protein 2	AK051840|Ssbp2|66970|single-stranded DNA binding protein 2	AK010220|Ssbp2|66970|single-stranded DNA binding protein 2	AY037837|Ssbp2|66970|single-stranded DNA binding protein 2	AK005150|Ssbp2|66970|single-stranded DNA binding protein 2	AK013177|Ssbp2|66970|single-stranded DNA binding protein 2	AY167988|Ssbp2|66970|single-stranded DNA binding protein 2
mm9_v1_chr2_+_119722957_119723040	3.41566	GUCAGUU	AK046252|Mga|29808|MAX gene associated	NM_001164274|Mga|29808|MAX gene associated	NM_013720|Mga|29808|MAX gene associated	AK162302|Mga|29808|MAX gene associated	AK032570|Mga|29808|MAX gene associated	AK012050|Mga|29808|MAX gene associated	AK139919|Mga|29808|MAX gene associated	AK172962|Mga|29808|MAX gene associated
mm9_v1_chr2_-_13715101_13715210	3.36378	GUCAGUU	BC115912|St8sia6|241230|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	BC118063|St8sia6|241230|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	AB059554|St8sia6|241230|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	NM_145838|St8sia6|241230|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	AK172400|St8sia6|241230|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6
mm9_v1_chr12_+_90191833_90191842	3.30434	GUCAGUU	NM_172544|Nrxn3|18191|neurexin III	AK032126|Nrxn3|18191|neurexin III
mm9_v1_chr19_+_4154645_4154678	3.2912	GUCAGUU	NM_016933|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	AK088334|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	AK165203|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	BC013273|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	BC100560|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	D10105|Ptprcap|19265|protein tyrosine phosphatase, receptor type, C polypeptide-associated protein
mm9_v1_chr18_-_70301202_70301243	3.27487	GUCAGUU	AK045312|Rab27b|80718|RAB27b, member RAS oncogene family	AK086987|Rab27b|80718|RAB27b, member RAS oncogene family	AK049854|Rab27b|80718|RAB27b, member RAS oncogene family	NM_001082553|Rab27b|80718|RAB27b, member RAS oncogene family
mm9_v1_chr6_+_108163089_108163111	3.27432	GUCAGUU	AK047719|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	AK137477|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	NM_010585|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	X15373|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1
mm9_v1_chr7_-_88974235_88974382	3.23209	GUCAGUU	BC072618|Btbd1|83962|BTB (POZ) domain containing 1	NM_146193|Btbd1|83962|BTB (POZ) domain containing 1	BC087937|Btbd1|83962|BTB (POZ) domain containing 1	AK088345|Btbd1|83962|BTB (POZ) domain containing 1
mm9_v1_chr6_+_71657791_71657963	3.15196	GUCAGUU	AK035238|Reep1|52250|receptor accessory protein 1	AK045056|Reep1|52250|receptor accessory protein 1	NM_178608|Reep1|52250|receptor accessory protein 1	AK053158|Reep1|52250|receptor accessory protein 1	AK136916|Reep1|52250|receptor accessory protein 1	BC046826|Reep1|52250|receptor accessory protein 1	AY562229|Reep1|52250|receptor accessory protein 1
mm9_v1_chr19_-_7180162_7180222	3.14484	GUCAGUU	AY495668|Flrt1|396184|fibronectin leucine rich transmembrane protein 1	AK031503|Flrt1|396184|fibronectin leucine rich transmembrane protein 1	NM_201411|Flrt1|396184|fibronectin leucine rich transmembrane protein 1	BC070403|Flrt1|396184|fibronectin leucine rich transmembrane protein 1
mm9_v1_chr14_-_73725576_73725603	3.12611	GUCAGUU	AK011246|Rb1|19645|retinoblastoma 1	BC096525|Rb1|19645|retinoblastoma 1	NM_009029|Rb1|19645|retinoblastoma 1
mm9_v1_chr15_-_86016336_86016570	3.09249	GUCAGUU	AK052269|Cerk|223753|ceramide kinase	BC094253|Cerk|223753|ceramide kinase	NM_145475|Cerk|223753|ceramide kinase
mm9_v1_chrX_+_162676870_162676901	3.06792	GUCAGUU	NM_001177961|Gpm6b|14758|glycoprotein m6b	NM_001177962|Gpm6b|14758|glycoprotein m6b	NM_023122|Gpm6b|14758|glycoprotein m6b	AK132778|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr17_+_48439264_48439362	3.05326	GUCAGUU	DQ341272|Treml2|328833|triggering receptor expressed on myeloid cells-like 2	NM_001033405|Treml2|328833|triggering receptor expressed on myeloid cells-like 2
mm9_v1_chr13_+_9093121_9093197	3.02297	GUCAGUU	AK080953|Larp4b|217980|La ribonucleoprotein domain family, member 4B	AK160759|Larp4b|217980|La ribonucleoprotein domain family, member 4B	NM_172585|Larp4b|217980|La ribonucleoprotein domain family, member 4B	AK042491|Larp4b|217980|La ribonucleoprotein domain family, member 4B	AK172916|Larp4b|217980|La ribonucleoprotein domain family, member 4B	BC059218|Larp4b|217980|La ribonucleoprotein domain family, member 4B	BC086626|Larp4b|217980|La ribonucleoprotein domain family, member 4B
mm9_v1_chr7_+_128061257_128061281	3.02278	GUCAGUU	AK005034|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	NM_001164096|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	NM_025298|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr13_+_58907953_58907974	3.01866	GUCAGUU	NM_008745|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr1_-_158869650_158869756	3.01733	GUCAGUU	BC043132|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	BC052663|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK169368|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK018622|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK029049|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK033549|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK161080|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK029993|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK036803|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_001159965|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_001159967|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_001159968|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_023884|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2
mm9_v1_chr10_+_20760625_20760625	2.99306	GUCAGUU	AK161335|Ahi1|52906|Abelson helper integration site 1	NM_001177776|Ahi1|52906|Abelson helper integration site 1
mm9_v1_chrX_+_162782484_162782852	2.9782	GUCAGUU	NM_001177955|Gpm6b|14758|glycoprotein m6b	NM_001177956|Gpm6b|14758|glycoprotein m6b	NM_001177957|Gpm6b|14758|glycoprotein m6b	NM_001177958|Gpm6b|14758|glycoprotein m6b	NM_001177959|Gpm6b|14758|glycoprotein m6b	NM_001177960|Gpm6b|14758|glycoprotein m6b	AF254869|Gpm6b|14758|glycoprotein m6b	AF254870|Gpm6b|14758|glycoprotein m6b	AF254872|Gpm6b|14758|glycoprotein m6b	AF254873|Gpm6b|14758|glycoprotein m6b	AF254874|Gpm6b|14758|glycoprotein m6b	AF254875|Gpm6b|14758|glycoprotein m6b	AF254878|Gpm6b|14758|glycoprotein m6b	AF254879|Gpm6b|14758|glycoprotein m6b	AK013660|Gpm6b|14758|glycoprotein m6b	AK140714|Gpm6b|14758|glycoprotein m6b	S65737|Gpm6b|14758|glycoprotein m6b
mm9_v1_chrX_+_133584130_133584209	2.96802	GUCAGUU	AK154624|Fam199x|245622|family with sequence similarity 199, X-linked	NM_146261|Fam199x|245622|family with sequence similarity 199, X-linked	BC031748|Fam199x|245622|family with sequence similarity 199, X-linked	AK039695|Fam199x|245622|family with sequence similarity 199, X-linked
mm9_v1_chr1_-_162281701_162281701	2.95736	GUCAGUU	AK147634|Rabgap1l|29809|RAB GTPase activating protein 1-like	NM_001038621|Rabgap1l|29809|RAB GTPase activating protein 1-like
mm9_v1_chr6_+_4853319_4853431	2.94356	GUCAGUU	AB091828|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	NM_181595|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	AK158559|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	BC053748|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm9_v1_chr8_-_113917651_113917728	2.94234	GUCAGUU	AY660882|Fa2h|338521|fatty acid 2-hydroxylase	BC046985|Fa2h|338521|fatty acid 2-hydroxylase	BC111912|Fa2h|338521|fatty acid 2-hydroxylase	BC128080|Fa2h|338521|fatty acid 2-hydroxylase	BC128081|Fa2h|338521|fatty acid 2-hydroxylase	AK090338|Fa2h|338521|fatty acid 2-hydroxylase	AK033736|Fa2h|338521|fatty acid 2-hydroxylase	AK161502|Fa2h|338521|fatty acid 2-hydroxylase	NM_178086|Fa2h|338521|fatty acid 2-hydroxylase
mm9_v1_chr1_+_78654399_78654472	2.90305	GUCAGUU	AK161708|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_001001981|Utp14b|195434|UTP14, U3 small nucleolar ribonucleoprotein, homolog B (yeast)	NM_001033606|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_001136222|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_028817|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK012088|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK160839|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK166723|Acsl3|74205|acyl-CoA synthetase long-chain family member 3
mm9_v1_chr4_+_84530230_84530239	2.90207	GUCAGUU	NM_175275|Cntln|338349|centlein, centrosomal protein	NM_177385|Cntln|338349|centlein, centrosomal protein
mm9_v1_chr1_+_138027943_138028013	2.892	GUCAGUU	NM_001039472|Kif21b|16565|kinesin family member 21B
mm9_v1_chr1_+_181476534_181476659	2.87307	GUCAGUU	AK146681|Cnst|226744|consortin, connexin sorting protein	AK089290|Cnst|226744|consortin, connexin sorting protein	AK036332|Cnst|226744|consortin, connexin sorting protein	AK040899|Cnst|226744|consortin, connexin sorting protein	AK040666|Cnst|226744|consortin, connexin sorting protein	AK087361|Cnst|226744|consortin, connexin sorting protein	BC054802|Cnst|226744|consortin, connexin sorting protein	NM_146105|Cnst|226744|consortin, connexin sorting protein
mm9_v1_chr1_-_38721799_38721808	2.80227	GUCAGUU	AK046648|Aff3|16764|AF4/FMR2 family, member 3	NM_010678|Aff3|16764|AF4/FMR2 family, member 3
mm9_v1_chr15_-_99358387_99358595	2.74297	GUCAGUU	AK158960|Faim2|72393|Fas apoptotic inhibitory molecule 2	NM_001038658|Faim2|72393|Fas apoptotic inhibitory molecule 2	NM_028224|Faim2|72393|Fas apoptotic inhibitory molecule 2	BC072560|Faim2|72393|Fas apoptotic inhibitory molecule 2
mm9_v1_chr11_+_4136787_4136837	2.7406	GUCAGUU	NM_001013365|Osm|18413|oncostatin M	BC099866|Osm|18413|oncostatin M	AK155637|Osm|18413|oncostatin M
mm9_v1_chr13_-_94269616_94269653	2.69492	GUCAGUU	BC069906|Jmy|57748|junction-mediating and regulatory protein	BC090835|Jmy|57748|junction-mediating and regulatory protein	NM_021310|Jmy|57748|junction-mediating and regulatory protein
mm9_v1_chr12_-_71448600_71448600	2.69098	GUCAGUU	BC052034|Trim9|94090|tripartite motif-containing 9	NM_001110202|Trim9|94090|tripartite motif-containing 9	NM_001110203|Trim9|94090|tripartite motif-containing 9	NM_053167|Trim9|94090|tripartite motif-containing 9
mm9_v1_chr14_+_120877548_120877707	2.68638	GUCAGUU	AK140318|Rap2a|76108|RAS related protein 2a	BC067194|Rap2a|76108|RAS related protein 2a	BC049084|Rap2a|76108|RAS related protein 2a	BC053003|Rap2a|76108|RAS related protein 2a	NM_029519|Rap2a|76108|RAS related protein 2a	AK018024|Rap2a|76108|RAS related protein 2a
mm9_v1_chr5_+_22252006_22252042	2.66664	GUCAGUU	NM_001081231|Lhfpl3|269629|lipoma HMGIC fusion partner-like 3	NM_029990|Lhfpl3|269629|lipoma HMGIC fusion partner-like 3	AK033906|Lhfpl3|269629|lipoma HMGIC fusion partner-like 3	AK020916|Lhfpl3|269629|lipoma HMGIC fusion partner-like 3
mm9_v1_chr16_-_78576898_78576912	2.63014	GUCAGUU	AK009258|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed	NM_025967|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed
mm9_v1_chr2_-_51790163_51790163	2.62662	GUCAGUU	NM_001141982|Rbm43|71684|RNA binding motif protein 43
mm9_v1_chr16_+_17489743_17489783	2.60714	GUCAGUU	BC046517|Aifm3|72168|apoptosis-inducing factor, mitochondrion-associated 3	NM_175178|Aifm3|72168|apoptosis-inducing factor, mitochondrion-associated 3
mm9_v1_chr2_-_51790406_51790534	2.54437	GUCAGUU	BC003333|Rbm43|71684|RNA binding motif protein 43	NM_001141981|Rbm43|71684|RNA binding motif protein 43	NM_030243|Rbm43|71684|RNA binding motif protein 43
mm9_v1_chr5_+_35104373_35104397	2.54367	GUCAGUU	AK042204|Htt|15194|huntingtin	NM_010414|Htt|15194|huntingtin
mm9_v1_chr15_-_84388245_84388282	2.54007	GUCAGUU	BC094559|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like	NM_177630|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like
mm9_v1_chr1_-_74590801_74590859	2.53553	GUCAGUU	BC139091|Usp37|319651|ubiquitin specific peptidase 37	AK133317|Usp37|319651|ubiquitin specific peptidase 37	AK030013|Usp37|319651|ubiquitin specific peptidase 37	NM_176972|Usp37|319651|ubiquitin specific peptidase 37
mm9_v1_chr3_-_36589048_36589088	2.53416	GUCAGUU	AK082063|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	AK080619|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	AK032317|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	NM_019510|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3
mm9_v1_chr2_+_49921978_49921983	2.52537	GUCAGUU	NM_177139|Lypd6|320343|LY6/PLAUR domain containing 6	AK053620|Lypd6|320343|LY6/PLAUR domain containing 6
mm9_v1_chr8_+_90723069_90723153	2.50589	GUCAGUU	AK077553|Papd5|214627|PAP associated domain containing 5	NM_001164497|Papd5|214627|PAP associated domain containing 5	NM_001164498|Papd5|214627|PAP associated domain containing 5	NM_001164499|Papd5|214627|PAP associated domain containing 5	BC059053|Papd5|214627|PAP associated domain containing 5	BC144796|Papd5|214627|PAP associated domain containing 5	BC144797|Papd5|214627|PAP associated domain containing 5	BC145737|Papd5|214627|PAP associated domain containing 5
mm9_v1_chr9_-_54509658_54509691	2.49614	GUCAGUU	AB050554|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	NM_053178|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1
mm9_v1_chr4_+_138011061_138011100	2.47777	GUCAGUU	NM_025451|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1	AY523601|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm9_v1_chr16_+_13358513_13358556	2.45447	GUCAGUU	NM_153588|Mkl2|239719|MKL/myocardin-like 2
mm9_v1_chr6_-_28781687_28781746	2.43074	GUCAGUU	BC117833|Lrrc4|192198|leucine rich repeat containing 4	BC117834|Lrrc4|192198|leucine rich repeat containing 4	AF300458|Lrrc4|192198|leucine rich repeat containing 4	BC012209|Lrrc4|192198|leucine rich repeat containing 4	DQ177325|Lrrc4|192198|leucine rich repeat containing 4	NM_138682|Lrrc4|192198|leucine rich repeat containing 4
mm9_v1_chr15_+_99532698_99532771	2.40762	GUCAGUU	NM_031842|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC059921|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	M25773|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	U66620|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC079839|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr18_-_66129715_66129836	2.40289	GUCAGUU	AY264291|Cplx4|225644|complexin 4	BC016082|Cplx4|225644|complexin 4	NM_145493|Cplx4|225644|complexin 4	AK044262|Cplx4|225644|complexin 4
mm9_v1_chr13_-_111070392_111070417	2.37083	GUCAGUU	AK014050|Rab3c|67295|RAB3C, member RAS oncogene family	NM_023852|Rab3c|67295|RAB3C, member RAS oncogene family
mm9_v1_chr1_+_132613903_132614127	2.3488	GUCAGUU	AK036938|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK036991|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	NM_178691|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	BC139034|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK044678|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	BC099948|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK053730|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)
mm9_v1_chr1_-_171677653_171677778	2.3056	GUCAGUU	AB004315|Rgs4|19736|regulator of G-protein signaling 4	BC003882|Rgs4|19736|regulator of G-protein signaling 4	BC055293|Rgs4|19736|regulator of G-protein signaling 4	AK030536|Rgs4|19736|regulator of G-protein signaling 4	AK039134|Rgs4|19736|regulator of G-protein signaling 4	DQ346659|Rgs4|19736|regulator of G-protein signaling 4	DQ346660|Rgs4|19736|regulator of G-protein signaling 4	DQ346661|Rgs4|19736|regulator of G-protein signaling 4	NM_009062|Rgs4|19736|regulator of G-protein signaling 4
mm9_v1_chr8_-_63462080_63462110	2.29595	GUCAGUU	AK159698|Clcn3|12725|chloride channel 3	AK036501|Clcn3|12725|chloride channel 3	NM_007711|Clcn3|12725|chloride channel 3	NM_173873|Clcn3|12725|chloride channel 3	NM_173874|Clcn3|12725|chloride channel 3
mm9_v1_chr5_-_100588826_100588826	2.28946	GUCAGUU	BC055321|Tmem150c|231503|transmembrane protein 150C	NM_182841|Tmem150c|231503|transmembrane protein 150C
mm9_v1_chr2_-_136213509_136213702	2.28673	GUCAGUU	AK163530|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK032593|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK079080|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK013814|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	BC099417|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK077967|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	NM_172858|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7
mm9_v1_chr2_+_28048592_28048772	2.28497	GUCAGUU	NM_001038613|Olfm1|56177|olfactomedin 1	NM_001038614|Olfm1|56177|olfactomedin 1	AK003031|Olfm1|56177|olfactomedin 1
mm9_v1_chr19_+_12873063_12873098	2.28193	GUCAGUU	AK039922|Lpxn|107321|leupaxin	AB071194|Lpxn|107321|leupaxin	NM_134152|Lpxn|107321|leupaxin
mm9_v1_chr12_-_4038848_4038914	2.26743	GUCAGUU	BC147643|Efr3b|668212|EFR3 homolog B (S. cerevisiae)	BC157968|Efr3b|668212|EFR3 homolog B (S. cerevisiae)	NM_001082483|Efr3b|668212|EFR3 homolog B (S. cerevisiae)
mm9_v1_chr7_+_107855215_107855319	2.25642	GUCAGUU	BC079886|Fam168a|319604|family with sequence similarity 168, member A	NM_178764|Fam168a|319604|family with sequence similarity 168, member A	AK043356|Fam168a|319604|family with sequence similarity 168, member A	AK047153|Fam168a|319604|family with sequence similarity 168, member A	AK048559|Fam168a|319604|family with sequence similarity 168, member A	AK051453|Fam168a|319604|family with sequence similarity 168, member A	AK084931|Fam168a|319604|family with sequence similarity 168, member A	AK137424|Fam168a|319604|family with sequence similarity 168, member A
mm9_v1_chr5_-_87174825_87174839	2.2478	GUCAGUU	BC115432|Tmprss11e|243084|transmembrane protease, serine 11e	BC115433|Tmprss11e|243084|transmembrane protease, serine 11e	AK162701|Tmprss11e|243084|transmembrane protease, serine 11e	AK037235|Tmprss11e|243084|transmembrane protease, serine 11e	NM_172880|Tmprss11e|243084|transmembrane protease, serine 11e	AY787860|Tmprss11e|243084|transmembrane protease, serine 11e
mm9_v1_chr1_+_148342795_148342819	2.23959	GUCAGUU	AK046878|Fam5c|215378|family with sequence similarity 5, member C	NM_153539|Fam5c|215378|family with sequence similarity 5, member C	BC099956|Fam5c|215378|family with sequence similarity 5, member C
mm9_v1_chr6_+_134590957_134591017	2.20395	GUCAGUU	NM_026371|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)	BC023059|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)
mm9_v1_chr2_+_13995715_13995918	2.20203	GUCAGUU	AK144987|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK169170|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	BC044666|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	NM_011484|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK157767|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK162431|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK163720|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	BC055326|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK163922|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK035924|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK147832|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	U43900|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK179759|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
mm9_v1_chr10_-_88720534_88720534	2.17371	GUCAGUU	BC065114|Ano4|320091|anoctamin 4	NM_178773|Ano4|320091|anoctamin 4
mm9_v1_chr5_+_123300153_123300232	2.17314	GUCAGUU	AK132330|Rnf34|80751|ring finger protein 34	BC004042|Rnf34|80751|ring finger protein 34	NM_030564|Rnf34|80751|ring finger protein 34	AK045696|Rnf34|80751|ring finger protein 34	AK046381|Rnf34|80751|ring finger protein 34	AK077221|Rnf34|80751|ring finger protein 34	AK150976|Rnf34|80751|ring finger protein 34	AK046274|Rnf34|80751|ring finger protein 34	AK159753|Rnf34|80751|ring finger protein 34	AK137606|Rnf34|80751|ring finger protein 34
mm9_v1_chr6_+_86354212_86354404	2.16829	GUCAGUU	NM_001164078|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	NM_001164079|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	NM_011585|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	AK144222|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	AK088486|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC023813|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC046812|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC027826|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	U55862|Tia1|21841|cytotoxic granule-associated RNA binding protein 1
mm9_v1_chr15_+_81767188_81767324	2.14545	GUCAGUU	NM_145473|Csdc2|105859|cold shock domain containing C2, RNA binding	AK132493|Csdc2|105859|cold shock domain containing C2, RNA binding	AK028916|Csdc2|105859|cold shock domain containing C2, RNA binding
mm9_v1_chr19_-_19185685_19185685	2.14524	GUCAGUU	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr10_+_20672352_20672469	2.14225	GUCAGUU	AK080373|Ahi1|52906|Abelson helper integration site 1	NM_026203|Ahi1|52906|Abelson helper integration site 1	AK005991|Ahi1|52906|Abelson helper integration site 1	AK013997|Ahi1|52906|Abelson helper integration site 1	AK019416|Ahi1|52906|Abelson helper integration site 1	BC106130|Ahi1|52906|Abelson helper integration site 1	BC065146|Ahi1|52906|Abelson helper integration site 1	AK036336|Ahi1|52906|Abelson helper integration site 1	AY133241|Ahi1|52906|Abelson helper integration site 1
mm9_v1_chr2_-_72817311_72817337	2.14084	GUCAGUU	AK088238|Sp3|20687|trans-acting transcription factor 3	NM_001098425|Sp3|20687|trans-acting transcription factor 3
mm9_v1_chr6_-_91465788_91465881	2.13952	GUCAGUU	U27398|Xpc|22591|xeroderma pigmentosum, complementation group C	AK170975|Xpc|22591|xeroderma pigmentosum, complementation group C	AK166981|Xpc|22591|xeroderma pigmentosum, complementation group C	AB071144|Xpc|22591|xeroderma pigmentosum, complementation group C	AK028595|Xpc|22591|xeroderma pigmentosum, complementation group C	AK004713|Xpc|22591|xeroderma pigmentosum, complementation group C	BC052725|Xpc|22591|xeroderma pigmentosum, complementation group C	NM_009531|Xpc|22591|xeroderma pigmentosum, complementation group C
mm9_v1_chr13_+_41701584_41701584	2.12724	GUCAGUU	NM_001163572|Tmem170b|621976|transmembrane protein 170B
mm9_v1_chr6_+_125095236_125095314	2.12601	GUCAGUU	AK044382|Iffo1|320678|intermediate filament family orphan 1	AK163571|Iffo1|320678|intermediate filament family orphan 1	NM_178787|Iffo1|320678|intermediate filament family orphan 1	AK028273|Iffo1|320678|intermediate filament family orphan 1	AK044709|Iffo1|320678|intermediate filament family orphan 1	AK053568|Iffo1|320678|intermediate filament family orphan 1	AK044728|Iffo1|320678|intermediate filament family orphan 1	NM_001039669|Iffo1|320678|intermediate filament family orphan 1	AK031129|Iffo1|320678|intermediate filament family orphan 1
mm9_v1_chrX_+_83115611_83115703	2.118	GUCAGUU	NM_001163539|5430427O19Rik|71398|RIKEN cDNA 5430427O19 gene	AK155591|5430427O19Rik|71398|RIKEN cDNA 5430427O19 gene	AK154689|5430427O19Rik|71398|RIKEN cDNA 5430427O19 gene
mm9_v1_chr5_-_25004598_25004626	2.11462	GUCAGUU	AK044828|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3	NM_001081383|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3	AK087368|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3
mm9_v1_chr3_-_9833502_9833678	2.0989	GUCAGUU	BC145328|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	BC145761|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	BC145763|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK172106|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK156986|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK040230|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK041695|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK089329|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK156000|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	NM_001195031|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	NM_053182|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1
mm9_v1_chr8_-_63433528_63433596	2.09665	GUCAGUU	BC057133|Clcn3|12725|chloride channel 3	NM_173876|Clcn3|12725|chloride channel 3
mm9_v1_chrX_+_103222548_103222685	2.09561	GUCAGUU	AK017506|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK033254|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	NM_001109757|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	NM_009726|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK155643|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK171563|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK172209|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	U03434|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	U71091|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	BC141395|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide
mm9_v1_chr5_+_30559138_30559249	2.08923	GUCAGUU	NM_027652|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK040494|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK079325|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK083973|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK140416|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC106097|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK048011|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK014530|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC115783|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC117551|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK122544|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK040745|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
mm9_v1_chr1_+_108068405_108068445	2.07353	GUCAGUU	NM_133821|Phlpp1|98432|PH domain and leucine rich repeat protein phosphatase 1
mm9_v1_chr4_+_154338216_154338246	2.06608	GUCAGUU	AK050894|Pank4|269614|pantothenate kinase 4	BC050089|Pank4|269614|pantothenate kinase 4	NM_172990|Pank4|269614|pantothenate kinase 4
mm9_v1_chr4_+_154624074_154624074	2.05822	GUCAGUU	AK011291|2610002J02Rik|67513|RIKEN cDNA 2610002J02 gene	NM_001190445|2610002J02Rik|67513|RIKEN cDNA 2610002J02 gene
mm9_v1_chr8_+_23970006_23970020	2.03763	GUCAGUU	AK028058|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK082463|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	NM_001081149|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK039615|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK036885|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK054322|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK132474|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK143408|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3
mm9_v1_chr13_-_14615371_14615494	2.03488	GUCAGUU	AK051569|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK084246|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK086170|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK047678|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	NM_001081348|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK053694|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
mm9_v1_chr18_+_42435006_42435038	2.0314	GUCAGUU	NM_172626|Rbm27|225432|RNA binding motif protein 27	AY461716|Rbm27|225432|RNA binding motif protein 27
mm9_v1_chr13_-_52626065_52626204	2.01665	GUCAGUU	AK136096|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	AK136101|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	NM_001024474|Diras2|68203|DIRAS family, GTP-binding RAS-like 2
mm9_v1_chr5_-_100468240_100468240	2.01469	GUCAGUU	NM_016690|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like
mm9_v1_chr13_+_93195850_93196061	2.00561	GUCAGUU	AK078203|Ankrd34b|218440|ankyrin repeat domain 34B	AK090387|Ankrd34b|218440|ankyrin repeat domain 34B	NM_175455|Ankrd34b|218440|ankyrin repeat domain 34B	BC096609|Ankrd34b|218440|ankyrin repeat domain 34B	BC119312|Ankrd34b|218440|ankyrin repeat domain 34B	BC119314|Ankrd34b|218440|ankyrin repeat domain 34B
mm9_v1_chr18_+_33098694_33098843	1.99297	GUCAGUU	NM_009793|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	AK030219|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	BC070420|Camk4|12326|calcium/calmodulin-dependent protein kinase IV
mm9_v1_chr5_-_118694869_118695124	1.98856	GUCAGUU	AK046850|Rnft2|269695|ring finger protein, transmembrane 2	NM_172998|Rnft2|269695|ring finger protein, transmembrane 2	BC057302|Rnft2|269695|ring finger protein, transmembrane 2	AK148930|Rnft2|269695|ring finger protein, transmembrane 2	NM_001109902|Rnft2|269695|ring finger protein, transmembrane 2	AK090256|Rnft2|269695|ring finger protein, transmembrane 2
mm9_v1_chr1_+_129670740_129670806	1.98821	GUCAGUU	BC054122|Ccnt2|72949|cyclin T2	NM_028399|Ccnt2|72949|cyclin T2	AK156231|Ccnt2|72949|cyclin T2	AK154439|Ccnt2|72949|cyclin T2	AK156621|Ccnt2|72949|cyclin T2	AK152399|Ccnt2|72949|cyclin T2	AK036772|Ccnt2|72949|cyclin T2	AK013634|Ccnt2|72949|cyclin T2	AK049863|Ccnt2|72949|cyclin T2
mm9_v1_chr11_+_93857338_93857584	1.9589	GUCAGUU	AK161623|Spag9|70834|sperm associated antigen 9	NM_027569|Spag9|70834|sperm associated antigen 9	AF327451|Spag9|70834|sperm associated antigen 9	AB047782|Spag9|70834|sperm associated antigen 9	FJ042496|Spag9|70834|sperm associated antigen 9	AK030165|Spag9|70834|sperm associated antigen 9
mm9_v1_chr2_+_31428244_31428356	1.95193	GUCAGUU	NM_001033389|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK166081|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK137035|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK145377|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK166478|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK167671|Fubp3|320267|far upstream element (FUSE) binding protein 3
mm9_v1_chr2_+_158235580_158235588	1.9439	GUCAGUU	NM_177658|Ralgapb|228850|Ral GTPase activating protein, beta subunit (non-catalytic)
mm9_v1_chr11_+_68902025_68902081	1.94341	GUCAGUU	BC055105|Vamp2|22318|vesicle-associated membrane protein 2	NM_009497|Vamp2|22318|vesicle-associated membrane protein 2	BC039745|Vamp2|22318|vesicle-associated membrane protein 2	U60150|Vamp2|22318|vesicle-associated membrane protein 2
mm9_v1_chr15_+_6658368_6658402	1.93958	GUCAGUU	AK029196|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK036149|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK036492|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK082586|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK087858|Rictor|78757|RPTOR independent companion of MTOR, complex 2	NM_030168|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AY540053|Rictor|78757|RPTOR independent companion of MTOR, complex 2	BC120903|Rictor|78757|RPTOR independent companion of MTOR, complex 2	BC120904|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK019537|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK054119|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AY497009|Rictor|78757|RPTOR independent companion of MTOR, complex 2
mm9_v1_chr1_-_94998418_94998474	1.91995	GUCAGUU	BC045161|Kif1a|16560|kinesin family member 1A	BC054538|Kif1a|16560|kinesin family member 1A	BC062891|Kif1a|16560|kinesin family member 1A	NM_001110315|Kif1a|16560|kinesin family member 1A	NM_008440|Kif1a|16560|kinesin family member 1A
mm9_v1_chr7_-_88837850_88837850	1.91829	GUCAGUU	NM_001164087|Homer2|26557|homer homolog 2 (Drosophila)
mm9_v1_chr17_+_47748530_47748580	1.91037	GUCAGUU	AK041624|Med20|56771|mediator complex subunit 20	AK019130|Med20|56771|mediator complex subunit 20	AK043396|Med20|56771|mediator complex subunit 20	AK146345|Med20|56771|mediator complex subunit 20	NM_020048|Med20|56771|mediator complex subunit 20	AK031504|Med20|56771|mediator complex subunit 20	BC060122|Med20|56771|mediator complex subunit 20	AK141369|Med20|56771|mediator complex subunit 20	AJ245617|Med20|56771|mediator complex subunit 20
mm9_v1_chr2_+_28061156_28061215	1.90144	GUCAGUU	D78262|Olfm1|56177|olfactomedin 1	D78263|Olfm1|56177|olfactomedin 1	NM_001038612|Olfm1|56177|olfactomedin 1	NM_019498|Olfm1|56177|olfactomedin 1
mm9_v1_chr9_-_123883398_123883524	1.89534	GUCAGUU	AK076275|Ccr1|12768|chemokine (C-C motif) receptor 1	AK031109|Ccr1|12768|chemokine (C-C motif) receptor 1	AK036690|Ccr1|12768|chemokine (C-C motif) receptor 1	NM_009912|Ccr1|12768|chemokine (C-C motif) receptor 1
mm9_v1_chrX_+_97972559_97972657	1.89164	GUCAGUU	NM_001177780|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK159655|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK167365|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK148464|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr1_+_148344816_148344867	1.88797	GUCAGUU	NM_001145807|Fam5c|215378|family with sequence similarity 5, member C	AK083233|Fam5c|215378|family with sequence similarity 5, member C	BC030498|Fam5c|215378|family with sequence similarity 5, member C	AK140520|Fam5c|215378|family with sequence similarity 5, member C
mm9_v1_chr7_+_63023547_63023630	1.88686	GUCAGUU	AK139362|Siglech|233274|sialic acid binding Ig-like lectin H	NM_178706|Siglech|233274|sialic acid binding Ig-like lectin H	AK080658|Siglech|233274|sialic acid binding Ig-like lectin H	AK032377|Siglech|233274|sialic acid binding Ig-like lectin H	DQ208935|Siglech|233274|sialic acid binding Ig-like lectin H	BC120501|Siglech|233274|sialic acid binding Ig-like lectin H	BC144741|Siglech|233274|sialic acid binding Ig-like lectin H	BC144742|Siglech|233274|sialic acid binding Ig-like lectin H	BC144743|Siglech|233274|sialic acid binding Ig-like lectin H	BC098229|Siglech|233274|sialic acid binding Ig-like lectin H	AK045719|Siglech|233274|sialic acid binding Ig-like lectin H	AK047813|Siglech|233274|sialic acid binding Ig-like lectin H	DQ157764|Siglech|233274|sialic acid binding Ig-like lectin H
mm9_v1_chr9_+_104472090_104472120	1.87845	GUCAGUU	AK043692|Cpne4|74020|copine IV	AK014396|Cpne4|74020|copine IV	BC043087|Cpne4|74020|copine IV	BC063081|Cpne4|74020|copine IV	NM_028719|Cpne4|74020|copine IV
mm9_v1_chr3_-_30868320_30868353	1.86759	GUCAGUU	BC132533|Phc3|241915|polyhomeotic-like 3 (Drosophila)	BC145123|Phc3|241915|polyhomeotic-like 3 (Drosophila)	BC145124|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AJ414610|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK037348|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK087339|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK166208|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK166296|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165954|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165955|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165956|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_153421|Phc3|241915|polyhomeotic-like 3 (Drosophila)
mm9_v1_chr7_+_91040481_91040625	1.84205	GUCAGUU	NM_023403|Mesdc2|67943|mesoderm development candidate 2
mm9_v1_chrX_+_97963061_97963090	1.84051	GUCAGUU	AK122474|Dlg3|53310|discs, large homolog 3 (Drosophila)	NM_001177778|Dlg3|53310|discs, large homolog 3 (Drosophila)	BC094368|Dlg3|53310|discs, large homolog 3 (Drosophila)	NM_016747|Dlg3|53310|discs, large homolog 3 (Drosophila)	D87117|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr17_+_26852581_26852657	1.84039	GUCAGUU	AK030092|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	NM_029870|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK044760|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK020796|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132423|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132454|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene
mm9_v1_chr10_+_122701051_122701245	1.83742	GUCAGUU	AK139403|Fam19a2|268354|family with sequence similarity 19, member A2	NM_182807|Fam19a2|268354|family with sequence similarity 19, member A2	AK140763|Fam19a2|268354|family with sequence similarity 19, member A2	BC027082|Fam19a2|268354|family with sequence similarity 19, member A2
mm9_v1_chr15_+_81633102_81633182	1.83261	GUCAGUU	NM_153484|Tef|21685|thyrotroph embryonic factor	AK045575|Tef|21685|thyrotroph embryonic factor	AK053229|Tef|21685|thyrotroph embryonic factor	AK027965|Tef|21685|thyrotroph embryonic factor	AK141606|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr5_-_90312358_90312358	1.83098	GUCAGUU	AK031900|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	NM_001081401|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	NM_177872|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3
mm9_v1_chr11_-_61668486_61668601	1.78626	GUCAGUU	AF145922|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	BC046778|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	BC053029|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK146620|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK122331|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK146893|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK148142|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	NM_013881|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)
mm9_v1_chr12_+_89961317_89961336	1.78159	GUCAGUU	AK078216|Nrxn3|18191|neurexin III	AK082055|Nrxn3|18191|neurexin III	NM_001198587|Nrxn3|18191|neurexin III	AK149250|Nrxn3|18191|neurexin III
mm9_v1_chr6_-_77929660_77929669	1.77755	GUCAGUU	NM_001109764|Ctnna2|12386|catenin (cadherin associated protein), alpha 2	NM_009819|Ctnna2|12386|catenin (cadherin associated protein), alpha 2	NM_145732|Ctnna2|12386|catenin (cadherin associated protein), alpha 2
mm9_v1_chr7_+_104480819_104480860	1.76596	GUCAGUU	NM_001039039|Kctd21|622320|potassium channel tetramerisation domain containing 21	AK141547|Kctd21|622320|potassium channel tetramerisation domain containing 21
mm9_v1_chr12_+_112088488_112088532	1.76047	GUCAGUU	BC150732|Zfp839|72805|zinc finger protein 839	NM_028365|Zfp839|72805|zinc finger protein 839	AK013356|Zfp839|72805|zinc finger protein 839
mm9_v1_chr9_+_66561492_66561635	1.7598	GUCAGUU	NM_178396|Car12|76459|carbonic anyhydrase 12	AK052639|Car12|76459|carbonic anyhydrase 12	AK157977|Car12|76459|carbonic anyhydrase 12	AK037694|Car12|76459|carbonic anyhydrase 12	AK166132|Car12|76459|carbonic anyhydrase 12	BC031385|Car12|76459|carbonic anyhydrase 12	BC035941|Car12|76459|carbonic anyhydrase 12	AK170859|Car12|76459|carbonic anyhydrase 12	BC033432|Car12|76459|carbonic anyhydrase 12
mm9_v1_chr1_-_173164404_173164481	1.71955	GUCAGUU	J05020|Fcer1g|14127|Fc receptor, IgE, high affinity I, gamma polypeptide	BC034163|Fcer1g|14127|Fc receptor, IgE, high affinity I, gamma polypeptide	AK155600|Fcer1g|14127|Fc receptor, IgE, high affinity I, gamma polypeptide	NM_010185|Fcer1g|14127|Fc receptor, IgE, high affinity I, gamma polypeptide
mm9_v1_chr16_+_45610535_45610644	1.71808	GUCAGUU	AK036553|Gcet2|14525|germinal center expressed transcript 2	NM_001159297|Gcet2|14525|germinal center expressed transcript 2	NM_008099|Gcet2|14525|germinal center expressed transcript 2	U13263|Gcet2|14525|germinal center expressed transcript 2	BC099585|Gcet2|14525|germinal center expressed transcript 2	AY500830|Gcet2|14525|germinal center expressed transcript 2
mm9_v1_chr2_-_180444687_180444716	1.71805	GUCAGUU	BC096662|Dido1|23856|death inducer-obliterator 1	AK129117|Dido1|23856|death inducer-obliterator 1	BC060249|Dido1|23856|death inducer-obliterator 1	NM_177852|Dido1|23856|death inducer-obliterator 1
mm9_v1_chr3_-_87734096_87734116	1.6774	GUCAGUU	NM_153562|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1
mm9_v1_chr2_-_162486882_162486956	1.66031	GUCAGUU	AF244125|Ptprt|19281|protein tyrosine phosphatase, receptor type, T	NM_021464|Ptprt|19281|protein tyrosine phosphatase, receptor type, T
mm9_v1_chr7_+_134439804_134439861	1.65302	GUCAGUU	AK156251|Itgal|16408|integrin alpha L	AK172394|Itgal|16408|integrin alpha L	AK154115|Itgal|16408|integrin alpha L	AK169628|Itgal|16408|integrin alpha L	NM_008400|Itgal|16408|integrin alpha L
mm9_v1_chr1_+_179374783_179374796	1.65102	GUCAGUU	BC089333|Zfp238|30928|zinc finger protein 238	NM_001012330|Zfp238|30928|zinc finger protein 238
mm9_v1_chr6_+_134589529_134589529	1.63541	GUCAGUU	NM_001170479|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)
mm9_v1_chr16_-_31201251_31201348	1.6237	GUCAGUU	AK032916|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK129041|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK044812|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK020591|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	NM_030138|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
mm9_v1_chr4_-_131978279_131978374	1.61365	GUCAGUU	BC096033|Phactr4|100169|phosphatase and actin regulator 4	AK049209|Phactr4|100169|phosphatase and actin regulator 4	BC075672|Phactr4|100169|phosphatase and actin regulator 4	AK220496|Phactr4|100169|phosphatase and actin regulator 4	NM_001161797|Phactr4|100169|phosphatase and actin regulator 4	NM_175306|Phactr4|100169|phosphatase and actin regulator 4
mm9_v1_chr12_+_56331411_56331464	1.6136	GUCAGUU	AK146826|Srp54c|100101806|signal recognition particle 54C	AK010716|Srp54b|665155|signal recognition particle 54B	BC005543|Srp54c|100101806|signal recognition particle 54C	AK090018|Srp54c|100101806|signal recognition particle 54C	NM_001100110|Srp54c|100101806|signal recognition particle 54C
mm9_v1_chr15_-_63891810_63892112	1.60598	GUCAGUU	AK075613|Fam49b|223601|family with sequence similarity 49, member B	AK043641|Fam49b|223601|family with sequence similarity 49, member B	AK028062|Fam49b|223601|family with sequence similarity 49, member B	NM_144846|Fam49b|223601|family with sequence similarity 49, member B
mm9_v1_chr3_+_84756090_84756352	1.60468	GUCAGUU	AF391192|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_080428|Fbxw7|50754|F-box and WD-40 domain protein 7	AF427101|Fbxw7|50754|F-box and WD-40 domain protein 7	BC131648|Fbxw7|50754|F-box and WD-40 domain protein 7	AB221593|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr4_-_59796621_59796743	1.6001	GUCAGUU	BC116204|1110054O05Rik|66209|RIKEN cDNA 1110054O05 gene	BC116205|1110054O05Rik|66209|RIKEN cDNA 1110054O05 gene	AK012023|1110054O05Rik|66209|RIKEN cDNA 1110054O05 gene	AK004256|1110054O05Rik|66209|RIKEN cDNA 1110054O05 gene	AK005245|1110054O05Rik|66209|RIKEN cDNA 1110054O05 gene	AK169537|1110054O05Rik|66209|RIKEN cDNA 1110054O05 gene	AK159116|1110054O05Rik|66209|RIKEN cDNA 1110054O05 gene	AK049428|1110054O05Rik|66209|RIKEN cDNA 1110054O05 gene	NM_001013577|1110054O05Rik|66209|RIKEN cDNA 1110054O05 gene
mm9_v1_chr6_+_97879810_97879849	1.5985	GUCAGUU	NM_001178049|Mitf|17342|microphthalmia-associated transcription factor	AK052895|Mitf|17342|microphthalmia-associated transcription factor	U19874|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr16_-_46010510_46010548	1.59185	GUCAGUU	NM_001134480|Plcxd2|433022|phosphatidylinositol-specific phospholipase C, X domain containing 2
mm9_v1_chr13_+_41345120_41345273	1.57764	GUCAGUU	NM_001135577|BC024659|108934|cDNA sequence BC024659	BC066054|BC024659|108934|cDNA sequence BC024659	BC094222|BC024659|108934|cDNA sequence BC024659
mm9_v1_chr10_-_122513447_122513560	1.56885	GUCAGUU	AK122425|Mon2|67074|MON2 homolog (yeast)	NM_001163024|Mon2|67074|MON2 homolog (yeast)	NM_001163025|Mon2|67074|MON2 homolog (yeast)	NM_153395|Mon2|67074|MON2 homolog (yeast)
mm9_v1_chr8_-_74090499_74090547	1.56367	GUCAGUU	BC021911|Nxnl1|234404|nucleoredoxin-like 1	BC017153|Nxnl1|234404|nucleoredoxin-like 1	NM_145598|Nxnl1|234404|nucleoredoxin-like 1
mm9_v1_chr6_+_120314116_120314182	1.54112	GUCAGUU	AK041568|Kdm5a|214899|lysine (K)-specific demethylase 5A	NM_145997|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK166055|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK159079|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK144877|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK139619|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK046187|Kdm5a|214899|lysine (K)-specific demethylase 5A	BC011506|Kdm5a|214899|lysine (K)-specific demethylase 5A
mm9_v1_chrX_+_147778717_147778787	1.53965	GUCAGUU	AK030477|Fam120c|207375|family with sequence similarity 120, member C	AK086058|Fam120c|207375|family with sequence similarity 120, member C	AK156920|Fam120c|207375|family with sequence similarity 120, member C	AY150023|Fam120c|207375|family with sequence similarity 120, member C	AY150024|Fam120c|207375|family with sequence similarity 120, member C	BC137973|Fam120c|207375|family with sequence similarity 120, member C	BC171940|Fam120c|207375|family with sequence similarity 120, member C	NM_198105|Fam120c|207375|family with sequence similarity 120, member C	AK136727|Fam120c|207375|family with sequence similarity 120, member C	AK166381|Fam120c|207375|family with sequence similarity 120, member C
mm9_v1_chr16_+_13256573_13256634	1.53052	GUCAGUU	NM_001122667|Mkl2|239719|MKL/myocardin-like 2	X66901|Mkl2|239719|MKL/myocardin-like 2
mm9_v1_chr7_-_88851798_88851810	1.51572	GUCAGUU	AK163423|Homer2|26557|homer homolog 2 (Drosophila)	NM_001164086|Homer2|26557|homer homolog 2 (Drosophila)	NM_011983|Homer2|26557|homer homolog 2 (Drosophila)
mm9_v1_chrX_-_159081510_159081550	1.51061	GUCAGUU	AY263368|Reps2|194590|RALBP1 associated Eps domain containing protein 2	NM_178256|Reps2|194590|RALBP1 associated Eps domain containing protein 2
mm9_v1_chr14_-_94287950_94288026	1.50615	GUCAGUU	NM_001081377|Pcdh9|211712|protocadherin 9	BC157952|Pcdh9|211712|protocadherin 9	BC172098|Pcdh9|211712|protocadherin 9	BC158114|Pcdh9|211712|protocadherin 9	BC158117|Pcdh9|211712|protocadherin 9
mm9_v1_chr14_-_52898946_52899069	1.50559	GUCAGUU	AK044202|Rab2b|76338|RAB2B, member RAS oncogene family	BC033312|Rab2b|76338|RAB2B, member RAS oncogene family	AK005230|Rab2b|76338|RAB2B, member RAS oncogene family	BC054719|Rab2b|76338|RAB2B, member RAS oncogene family	AK038393|Rab2b|76338|RAB2B, member RAS oncogene family	AK038576|Rab2b|76338|RAB2B, member RAS oncogene family	AK169657|Rab2b|76338|RAB2B, member RAS oncogene family	BC046334|Rab2b|76338|RAB2B, member RAS oncogene family	NM_172601|Rab2b|76338|RAB2B, member RAS oncogene family
mm9_v1_chr11_+_68316520_68316601	1.49851	GUCAGUU	NM_001004435|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	NM_001081566|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	AK169948|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	AK036623|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	BC028998|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	AK171063|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	AK151178|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	AK153039|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6
mm9_v1_chr19_+_53751795_53751795	1.49512	GUCAGUU	AK142175|Rbm20|73713|RNA binding motif protein 20	NM_001170847|Rbm20|73713|RNA binding motif protein 20
mm9_v1_chr1_-_88567078_88567149	1.49491	GUCAGUU	BC111834|Nppc|18159|natriuretic peptide type C	AK036176|Nppc|18159|natriuretic peptide type C	NM_010933|Nppc|18159|natriuretic peptide type C	AK020093|Nppc|18159|natriuretic peptide type C
mm9_v1_chrX_+_46823626_46823742	1.48736	GUCAGUU	NM_001081123|Arhgap36|75404|Rho GTPase activating protein 36	BC145645|Arhgap36|75404|Rho GTPase activating protein 36	AK048167|Arhgap36|75404|Rho GTPase activating protein 36
mm9_v1_chr12_+_56256326_56256400	1.48027	GUCAGUU	NM_011899|Srp54a|24067|signal recognition particle 54A	X16319|Srp54b|665155|signal recognition particle 54B	AK011928|Srp54a|24067|signal recognition particle 54A	AK010716|Srp54b|665155|signal recognition particle 54B	BC019683|Srp54a|24067|signal recognition particle 54A	AK090018|Srp54c|100101806|signal recognition particle 54C
mm9_v1_chr6_+_47404312_47404467	1.47931	GUCAGUU	BC029260|Cul1|26965|cullin 1	NM_012042|Cul1|26965|cullin 1	AK147004|Cul1|26965|cullin 1	AK165978|Cul1|26965|cullin 1	AK040053|Cul1|26965|cullin 1	AF176910|Cul1|26965|cullin 1	AF136441|Cul1|26965|cullin 1
mm9_v1_chr2_+_38863553_38863815	1.47671	GUCAGUU	BC024482|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	AK008255|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	NM_028809|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	AK181564|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like
mm9_v1_chr6_+_97757012_97757093	1.47623	GUCAGUU	AK154189|Mitf|17342|microphthalmia-associated transcription factor	AK155350|Mitf|17342|microphthalmia-associated transcription factor	AK160757|Mitf|17342|microphthalmia-associated transcription factor	NM_001113198|Mitf|17342|microphthalmia-associated transcription factor	AB009397|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr6_-_97129076_97129149	1.46718	GUCAGUU	AK144898|Tmf1|232286|TATA element modulatory factor 1	AK144729|Tmf1|232286|TATA element modulatory factor 1	BC150931|Tmf1|232286|TATA element modulatory factor 1	NM_001081111|Tmf1|232286|TATA element modulatory factor 1
mm9_v1_chr12_-_32398730_32398790	1.44182	GUCAGUU	AK140577|Gpr22|73010|G protein-coupled receptor 22	AK034194|Gpr22|73010|G protein-coupled receptor 22	AK013755|Gpr22|73010|G protein-coupled receptor 22	AK048077|Gpr22|73010|G protein-coupled receptor 22	AK141569|Gpr22|73010|G protein-coupled receptor 22	BC089509|Gpr22|73010|G protein-coupled receptor 22	NM_175191|Gpr22|73010|G protein-coupled receptor 22
mm9_v1_chr3_+_106904470_106904486	1.42081	GUCAGUU	AK044342|Kcna2|16490|potassium voltage-gated channel, shaker-related subfamily, member 2	NM_008417|Kcna2|16490|potassium voltage-gated channel, shaker-related subfamily, member 2
mm9_v1_chrX_+_45265614_45265652	1.41523	GUCAGUU	AK047906|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK035315|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK041963|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK044320|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK138269|Ocrl|320634|oculocerebrorenal syndrome of Lowe	BC068146|Ocrl|320634|oculocerebrorenal syndrome of Lowe	NM_177215|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK028306|Ocrl|320634|oculocerebrorenal syndrome of Lowe	AK044488|Ocrl|320634|oculocerebrorenal syndrome of Lowe
mm9_v1_chr6_+_128995918_128995965	1.41394	GUCAGUU	AK041601|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	NM_153094|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	AK154278|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	BC107177|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	BC107178|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	BC127141|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	BC127142|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	AK170023|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	AY029597|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	DQ237931|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F
mm9_v1_chr10_-_105011439_105011534	1.41196	GUCAGUU	BC092226|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	AK052344|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	AK135552|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	NM_177368|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2
mm9_v1_chrX_+_97969784_97969833	1.40322	GUCAGUU	NM_001177779|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr12_+_56181474_56181576	1.39172	GUCAGUU	NM_011899|Srp54a|24067|signal recognition particle 54A	X16319|Srp54b|665155|signal recognition particle 54B	AK011928|Srp54a|24067|signal recognition particle 54A	BC019683|Srp54a|24067|signal recognition particle 54A
mm9_v1_chr2_+_34965011_34965138	1.39165	GUCAGUU	AK041715|Cep110|26920|centrosomal protein 110	NM_012018|Cep110|26920|centrosomal protein 110	AK031338|Cep110|26920|centrosomal protein 110	AK020148|Cep110|26920|centrosomal protein 110	BC038386|Cep110|26920|centrosomal protein 110	BC158010|Cep110|26920|centrosomal protein 110
mm9_v1_chr4_+_40669478_40669634	1.38516	GUCAGUU	NM_008298|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	AK049963|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	AK145963|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	AK083046|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	AK167139|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	AK167212|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	AF055664|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	BC057876|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	BC158024|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1
mm9_v1_chr15_-_48623520_48623540	1.38057	GUCAGUU	AK140264|Csmd3|239420|CUB and Sushi multiple domains 3	AK163122|Csmd3|239420|CUB and Sushi multiple domains 3	NM_001081391|Csmd3|239420|CUB and Sushi multiple domains 3
mm9_v1_chr5_-_151468105_151468189	1.37904	GUCAGUU	AK038740|N4bp2l2|381695|NEDD4 binding protein 2-like 2	BC037393|N4bp2l2|381695|NEDD4 binding protein 2-like 2	NM_201369|N4bp2l2|381695|NEDD4 binding protein 2-like 2
mm9_v1_chr19_+_27397077_27397240	1.37882	GUCAGUU	BC046490|Kcnv2|240595|potassium channel, subfamily V, member 2	BC039042|Kcnv2|240595|potassium channel, subfamily V, member 2	NM_183179|Kcnv2|240595|potassium channel, subfamily V, member 2	AY238939|Kcnv2|240595|potassium channel, subfamily V, member 2
mm9_v1_chr8_+_93352723_93352742	1.37642	GUCAGUU	AK034446|Chd9|109151|chromodomain helicase DNA binding protein 9	NM_177224|Chd9|109151|chromodomain helicase DNA binding protein 9	AK039562|Chd9|109151|chromodomain helicase DNA binding protein 9	DQ127229|Chd9|109151|chromodomain helicase DNA binding protein 9
mm9_v1_chr4_-_34830178_34830200	1.3706	GUCAGUU	AK017652|Zfp292|30046|zinc finger protein 292	AK018067|Zfp292|30046|zinc finger protein 292	NM_013889|Zfp292|30046|zinc finger protein 292	BC036997|Zfp292|30046|zinc finger protein 292
mm9_v1_chr2_-_48804672_48804789	1.36835	GUCAGUU	BC019748|Orc4|26428|origin recognition complex, subunit 4	BC015072|Orc4|26428|origin recognition complex, subunit 4	AJ003140|Orc4|26428|origin recognition complex, subunit 4	AK011550|Orc4|26428|origin recognition complex, subunit 4	AK012669|Orc4|26428|origin recognition complex, subunit 4	AK049534|Orc4|26428|origin recognition complex, subunit 4	AK084326|Orc4|26428|origin recognition complex, subunit 4	AK010258|Orc4|26428|origin recognition complex, subunit 4	AK169291|Orc4|26428|origin recognition complex, subunit 4	AK076324|Orc4|26428|origin recognition complex, subunit 4	NM_001177313|Orc4|26428|origin recognition complex, subunit 4	NM_011958|Orc4|26428|origin recognition complex, subunit 4
mm9_v1_chr8_-_46418352_46418573	1.35504	GUCAGUU	BC138967|Cyp4v3|102294|cytochrome P450, family 4, subfamily v, polypeptide 3	BC138968|Cyp4v3|102294|cytochrome P450, family 4, subfamily v, polypeptide 3	AB056457|Cyp4v3|102294|cytochrome P450, family 4, subfamily v, polypeptide 3	AK165754|Cyp4v3|102294|cytochrome P450, family 4, subfamily v, polypeptide 3	AK004724|Cyp4v3|102294|cytochrome P450, family 4, subfamily v, polypeptide 3	AK150653|Cyp4v3|102294|cytochrome P450, family 4, subfamily v, polypeptide 3	NM_133969|Cyp4v3|102294|cytochrome P450, family 4, subfamily v, polypeptide 3
mm9_v1_chr4_+_134024234_134024333	1.33956	GUCAGUU	NM_019641|Stmn1|16765|stathmin 1	AB064953|Stmn1|16765|stathmin 1	AK002606|Stmn1|16765|stathmin 1	AK012231|Stmn1|16765|stathmin 1	AK012347|Stmn1|16765|stathmin 1	AK014108|Stmn1|16765|stathmin 1	AK088628|Stmn1|16765|stathmin 1	AK013302|Stmn1|16765|stathmin 1	BC010581|Stmn1|16765|stathmin 1	BC031831|Stmn1|16765|stathmin 1	BC054396|Stmn1|16765|stathmin 1
mm9_v1_chr7_-_13864014_13864069	1.31924	GUCAGUU	AK028865|6330408A02Rik|321008|RIKEN cDNA 6330408A02 gene	AK018141|6330408A02Rik|321008|RIKEN cDNA 6330408A02 gene	AK162673|6330408A02Rik|321008|RIKEN cDNA 6330408A02 gene	NM_177312|6330408A02Rik|321008|RIKEN cDNA 6330408A02 gene
mm9_v1_chr9_-_50817077_50817177	1.30686	GUCAGUU	AB067780|Sik2|235344|salt inducible kinase 2	AK090386|Sik2|235344|salt inducible kinase 2	AK028526|Sik2|235344|salt inducible kinase 2	AK041032|Sik2|235344|salt inducible kinase 2	NM_178710|Sik2|235344|salt inducible kinase 2
mm9_v1_chr11_+_4157570_4157570	1.29964	GUCAGUU	NM_008501|Lif|16878|leukemia inhibitory factor
mm9_v1_chr3_-_41546402_41546435	1.28803	GUCAGUU	BC043136|Sclt1|67161|sodium channel and clathrin linker 1	BC060271|Sclt1|67161|sodium channel and clathrin linker 1	AK083894|Sclt1|67161|sodium channel and clathrin linker 1	AK016469|Sclt1|67161|sodium channel and clathrin linker 1	NM_001081411|Sclt1|67161|sodium channel and clathrin linker 1
mm9_v1_chr9_-_65917524_65917537	1.28504	GUCAGUU	BC138950|Snx22|382083|sorting nexin 22	BC138951|Snx22|382083|sorting nexin 22	AK032028|Snx22|382083|sorting nexin 22	NM_001025612|Snx22|382083|sorting nexin 22
mm9_v1_chr17_-_91492065_91492142	1.27121	GUCAGUU	BC079893|Nrxn1|18189|neurexin I	AK005349|Nrxn1|18189|neurexin I	AK139280|Nrxn1|18189|neurexin I	AK163484|Nrxn1|18189|neurexin I	AK037724|Nrxn1|18189|neurexin I	AB093249|Nrxn1|18189|neurexin I	NM_020252|Nrxn1|18189|neurexin I	NM_177284|Nrxn1|18189|neurexin I	AK137407|Nrxn1|18189|neurexin I
mm9_v1_chr3_-_91946657_91946675	1.25521	GUCAGUU	AK015762|4930511M18Rik|75063|RIKEN cDNA 4930511M18 gene	AK005903|Lelp1|69332|late cornified envelope-like proline-rich 1	NM_027042|Lelp1|69332|late cornified envelope-like proline-rich 1
mm9_v1_chr5_+_65522325_65522469	1.25078	GUCAGUU	BC057606|Klhl5|71778|kelch-like 5 (Drosophila)	NM_175174|Klhl5|71778|kelch-like 5 (Drosophila)
mm9_v1_chr3_-_123375305_123375392	1.24783	GUCAGUU	BC112404|Ndst3|83398|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	BC079622|Ndst3|83398|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	NM_031186|Ndst3|83398|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	AF221095|Ndst3|83398|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
mm9_v1_chr10_-_116018526_116018566	1.24424	GUCAGUU	AK149767|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	BC043133|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	AK167834|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	AK202363|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	AK172132|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	BC063105|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	AK078121|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	AK011231|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	BC065171|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	NM_001037846|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	NM_001037847|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	NM_001037848|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	NM_028082|Cnot2|72068|CCR4-NOT transcription complex, subunit 2
mm9_v1_chr2_-_38920925_38921012	1.23648	GUCAGUU	BC043090|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	NM_029793|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK028516|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	BC024637|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	BC053068|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK002954|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK008972|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK044987|Golga1|76899|golgi autoantigen, golgin subfamily a, 1
mm9_v1_chr17_+_71965554_71965636	1.23268	GUCAGUU	NM_175639|Wdr43|72515|WD repeat domain 43	AK012043|Wdr43|72515|WD repeat domain 43	AK152321|Wdr43|72515|WD repeat domain 43	AK032907|Wdr43|72515|WD repeat domain 43	AK080660|Wdr43|72515|WD repeat domain 43	AK129031|Wdr43|72515|WD repeat domain 43
mm9_v1_chr1_+_183081058_183081062	1.23211	GUCAGUU	NM_030131|Cnih4|98417|cornichon homolog 4 (Drosophila)
mm9_v1_chrX_+_106392094_106392130	1.23111	GUCAGUU	NM_001037917|Gm6377|622976|predicted gene 6377	AK080287|Gm6377|622976|predicted gene 6377	AK138683|Gm6377|622976|predicted gene 6377	BC147431|Gm6377|622976|predicted gene 6377	BC147432|Gm6377|622976|predicted gene 6377
mm9_v1_chr4_+_40669908_40669973	1.22895	GUCAGUU	NM_001164671|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	NM_001164672|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1
mm9_v1_chr15_+_25772997_25773018	1.22533	GUCAGUU	NM_001034851|Fam134b|66270|family with sequence similarity 134, member B
mm9_v1_chr17_+_8994520_8994643	1.20887	GUCAGUU	AK014090|Pde10a|23984|phosphodiesterase 10A	AY360383|Pde10a|23984|phosphodiesterase 10A	NM_011866|Pde10a|23984|phosphodiesterase 10A	AK147690|Pde10a|23984|phosphodiesterase 10A
mm9_v1_chr6_-_52859613_52859613	1.20431	GUCAGUU	BC048577|Jazf1|231986|JAZF zinc finger 1	NM_001168277|Jazf1|231986|JAZF zinc finger 1
mm9_v1_chr4_+_149656024_149656024	1.19337	GUCAGUU	NM_001085492|Rere|68703|arginine glutamic acid dipeptide (RE) repeats
mm9_v1_chr5_-_138312923_138313044	1.19177	GUCAGUU	BC147405|Pilrb2|545812|paired immunoglobin-like type 2 receptor beta 2	BC147406|Pilrb2|545812|paired immunoglobin-like type 2 receptor beta 2	AK036467|Pilrb2|545812|paired immunoglobin-like type 2 receptor beta 2	NM_001024932|Pilrb2|545812|paired immunoglobin-like type 2 receptor beta 2
mm9_v1_chr15_-_31297286_31297513	1.18133	GUCAGUU	AK089667|Ankrd33b|67434|ankyrin repeat domain 33B	AK170894|Ankrd33b|67434|ankyrin repeat domain 33B	AK017844|Ankrd33b|67434|ankyrin repeat domain 33B	AK002572|Ankrd33b|67434|ankyrin repeat domain 33B	AK012871|Ankrd33b|67434|ankyrin repeat domain 33B	AK156757|Ankrd33b|67434|ankyrin repeat domain 33B	BC100327|Ankrd33b|67434|ankyrin repeat domain 33B	NM_001164441|Ankrd33b|67434|ankyrin repeat domain 33B	NM_026153|Ankrd33b|67434|ankyrin repeat domain 33B	NM_027496|Ankrd33b|67434|ankyrin repeat domain 33B
mm9_v1_chr9_+_44947045_44947124	1.17571	GUCAGUU	BC139399|Scn4b|399548|sodium channel, type IV, beta	BC139400|Scn4b|399548|sodium channel, type IV, beta	AY669079|Scn4b|399548|sodium channel, type IV, beta	NM_001013390|Scn4b|399548|sodium channel, type IV, beta
mm9_v1_chr9_+_56266618_56266679	1.16298	GUCAGUU	AK088542|Hmg20a|66867|high mobility group 20A	AK032790|Hmg20a|66867|high mobility group 20A	AK039222|Hmg20a|66867|high mobility group 20A	AK004596|Hmg20a|66867|high mobility group 20A	AK086346|Hmg20a|66867|high mobility group 20A	AK154075|Hmg20a|66867|high mobility group 20A	BC013804|Hmg20a|66867|high mobility group 20A	DQ182735|Hmg20a|66867|high mobility group 20A	NM_025812|Hmg20a|66867|high mobility group 20A	AL355705|Hmg20a|66867|high mobility group 20A
mm9_v1_chr17_+_3114963_3115105	1.16085	GUCAGUU	AK157957|Scaf8|106583|SR-related CTD-associated factor 8	AK042381|Scaf8|106583|SR-related CTD-associated factor 8	NM_134123|Scaf8|106583|SR-related CTD-associated factor 8	BC075621|Scaf8|106583|SR-related CTD-associated factor 8	AK122451|Scaf8|106583|SR-related CTD-associated factor 8
mm9_v1_chr1_-_123224303_123224398	1.15197	GUCAGUU	BC015288|Insig2|72999|insulin induced gene 2	AK152076|Insig2|72999|insulin induced gene 2	AF527631|Insig2|72999|insulin induced gene 2	AY156085|Insig2|72999|insulin induced gene 2	BC023067|Insig2|72999|insulin induced gene 2	NM_133748|Insig2|72999|insulin induced gene 2	BC024411|Insig2|72999|insulin induced gene 2	AK154543|Insig2|72999|insulin induced gene 2	AK165634|Insig2|72999|insulin induced gene 2	AK161256|Insig2|72999|insulin induced gene 2
mm9_v1_chr2_-_180947711_180947889	1.14128	GUCAGUU	D26186|Srms|20811|src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	BC125325|Srms|20811|src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	BC120633|Srms|20811|src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	AK038866|Srms|20811|src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	NM_011481|Srms|20811|src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	D49427|Srms|20811|src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites
mm9_v1_chrX_+_148237785_148237953	1.13902	GUCAGUU	AK163416|Huwe1|59026|HECT, UBA and WWE domain containing 1	NM_021523|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK049460|Huwe1|59026|HECT, UBA and WWE domain containing 1	DQ097265|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK045183|Huwe1|59026|HECT, UBA and WWE domain containing 1	AY772010|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK165140|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK165648|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK031374|Huwe1|59026|HECT, UBA and WWE domain containing 1
mm9_v1_chr19_-_36811090_36811095	1.13608	GUCAGUU	BC054739|Ppp1r3c|53412|protein phosphatase 1, regulatory (inhibitor) subunit 3C	NM_016854|Ppp1r3c|53412|protein phosphatase 1, regulatory (inhibitor) subunit 3C
mm9_v1_chr13_+_54472705_54472742	1.13338	GUCAGUU	NM_009946|Cplx2|12890|complexin 2
mm9_v1_chr1_-_65003291_65003407	1.11109	GUCAGUU	AK034959|Plekhm3|241075|pleckstrin homology domain containing, family M, member 3	BC063098|Plekhm3|241075|pleckstrin homology domain containing, family M, member 3	NM_001039493|Plekhm3|241075|pleckstrin homology domain containing, family M, member 3
mm9_v1_chr19_+_38598686_38598698	1.10134	GUCAGUU	AB076247|Plce1|74055|phospholipase C, epsilon 1	NM_019588|Plce1|74055|phospholipase C, epsilon 1	BC138349|Plce1|74055|phospholipase C, epsilon 1	BC138350|Plce1|74055|phospholipase C, epsilon 1	BC145246|Plce1|74055|phospholipase C, epsilon 1
mm9_v1_chr18_-_67712374_67712430	1.09786	GUCAGUU	BC058669|Spire1|68166|spire homolog 1 (Drosophila)	NM_194355|Spire1|68166|spire homolog 1 (Drosophila)	BC094375|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chr7_+_109416314_109416360	1.09664	GUCAGUU	AK041944|Stim1|20866|stromal interaction molecule 1	AK031003|Stim1|20866|stromal interaction molecule 1	AK086594|Stim1|20866|stromal interaction molecule 1	NM_009287|Stim1|20866|stromal interaction molecule 1	BC021644|Stim1|20866|stromal interaction molecule 1
mm9_v1_chr14_-_17407701_17408109	1.08879	GUCAGUU	AK078471|Rarb|218772|retinoic acid receptor, beta	NM_011243|Rarb|218772|retinoic acid receptor, beta	S92180|Rarb|218772|retinoic acid receptor, beta	S56660|Rarb|218772|retinoic acid receptor, beta	AK054178|Rarb|218772|retinoic acid receptor, beta	BC076597|Rarb|218772|retinoic acid receptor, beta	X56573|Rarb|218772|retinoic acid receptor, beta
mm9_v1_chr12_-_80190607_80190656	1.08213	GUCAGUU	BC086806|Pigh|110417|phosphatidylinositol glycan anchor biosynthesis, class H	AK030744|Pigh|110417|phosphatidylinositol glycan anchor biosynthesis, class H	AK020902|Pigh|110417|phosphatidylinositol glycan anchor biosynthesis, class H	AK167892|Pigh|110417|phosphatidylinositol glycan anchor biosynthesis, class H	NM_029988|Pigh|110417|phosphatidylinositol glycan anchor biosynthesis, class H
mm9_v1_chrX_+_131252456_131252527	1.07976	GUCAGUU	NM_001166377|Armcx1|78248|armadillo repeat containing, X-linked 1	NM_001166378|Armcx1|78248|armadillo repeat containing, X-linked 1	NM_001166379|Armcx1|78248|armadillo repeat containing, X-linked 1	NM_001166380|Armcx1|78248|armadillo repeat containing, X-linked 1	NM_030066|Armcx1|78248|armadillo repeat containing, X-linked 1	BC026488|Armcx1|78248|armadillo repeat containing, X-linked 1	AK147002|Armcx1|78248|armadillo repeat containing, X-linked 1	BC068228|Armcx1|78248|armadillo repeat containing, X-linked 1
mm9_v1_chr3_-_135086338_135086446	1.07938	GUCAGUU	AK005184|Cisd2|67006|CDGSH iron sulfur domain 2	AK003486|Cisd2|67006|CDGSH iron sulfur domain 2	AK004257|Cisd2|67006|CDGSH iron sulfur domain 2	AK046746|Cisd2|67006|CDGSH iron sulfur domain 2	AK005301|Cisd2|67006|CDGSH iron sulfur domain 2	BC058279|Cisd2|67006|CDGSH iron sulfur domain 2	NM_025902|Cisd2|67006|CDGSH iron sulfur domain 2
mm9_v1_chr8_+_97296066_97296079	1.07821	GUCAGUU	NM_009142|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1
mm9_v1_chr4_+_9196439_9196508	1.07423	GUCAGUU	AK034888|Clvs1|74438|clavesin 1	AK083985|Clvs1|74438|clavesin 1	AK047462|Clvs1|74438|clavesin 1	AK083810|Clvs1|74438|clavesin 1	NM_028940|Clvs1|74438|clavesin 1	AK084350|Clvs1|74438|clavesin 1	AK043072|Clvs1|74438|clavesin 1	AK032549|Clvs1|74438|clavesin 1	BC062923|Clvs1|74438|clavesin 1
mm9_v1_chr18_-_67708826_67708826	1.07145	GUCAGUU	BC058320|Spire1|68166|spire homolog 1 (Drosophila)	NM_176832|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chr6_+_29269139_29269198	1.0666	GUCAGUU	AK133908|Fam71f1|330277|family with sequence similarity 71, member F1	BC048651|Fam71f1|330277|family with sequence similarity 71, member F1	NM_207258|Fam71f1|330277|family with sequence similarity 71, member F1	BC147513|Fam71f1|330277|family with sequence similarity 71, member F1	BC172074|Fam71f1|330277|family with sequence similarity 71, member F1	BC172085|Fam71f1|330277|family with sequence similarity 71, member F1	BC172086|Fam71f1|330277|family with sequence similarity 71, member F1	AB473725|Fam71f1|330277|family with sequence similarity 71, member F1
mm9_v1_chr14_+_49791899_49792002	1.06263	GUCAGUU	NM_001081430|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	AK015640|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC157931|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC158065|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC172029|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit
mm9_v1_chr12_+_104553168_104553168	1.06097	GUCAGUU	NM_001195726|Fam181a|544888|family with sequence similarity 181, member A
mm9_v1_chr2_-_44968728_44968798	1.05765	GUCAGUU	AJ535782|Zeb2|24136|zinc finger E-box binding homeobox 2	AK031541|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535780|Zeb2|24136|zinc finger E-box binding homeobox 2	NM_015753|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr6_+_97941776_97941914	1.05543	GUCAGUU	NM_008601|Mitf|17342|microphthalmia-associated transcription factor	U19875|Mitf|17342|microphthalmia-associated transcription factor	Z23066|Mitf|17342|microphthalmia-associated transcription factor	BC108976|Mitf|17342|microphthalmia-associated transcription factor	BC108977|Mitf|17342|microphthalmia-associated transcription factor	AB221657|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr1_+_183282758_183282760	1.05391	GUCAGUU	AK013789|Cnih3|72978|cornichon homolog 3 (Drosophila)	NM_001160211|Cnih3|72978|cornichon homolog 3 (Drosophila)	NM_001160212|Cnih3|72978|cornichon homolog 3 (Drosophila)	NM_028408|Cnih3|72978|cornichon homolog 3 (Drosophila)	AK033911|Cnih3|72978|cornichon homolog 3 (Drosophila)
mm9_v1_chr6_+_126889979_126890004	1.05172	GUCAGUU	AK037095|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK045541|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	NM_138594|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK043521|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK137201|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK042976|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK046707|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed
mm9_v1_chr11_+_32247758_32247888	1.04862	GUCAGUU	NM_177364|Sh3pxd2b|268396|SH3 and PX domains 2B	AK169978|Sh3pxd2b|268396|SH3 and PX domains 2B	AK220175|Sh3pxd2b|268396|SH3 and PX domains 2B	AK090119|Sh3pxd2b|268396|SH3 and PX domains 2B	AK042261|Sh3pxd2b|268396|SH3 and PX domains 2B	BC141306|Sh3pxd2b|268396|SH3 and PX domains 2B	AK043324|Sh3pxd2b|268396|SH3 and PX domains 2B	AK089330|Sh3pxd2b|268396|SH3 and PX domains 2B	AK163471|Sh3pxd2b|268396|SH3 and PX domains 2B	AK171384|Sh3pxd2b|268396|SH3 and PX domains 2B	BC115711|Sh3pxd2b|268396|SH3 and PX domains 2B	BC115764|Sh3pxd2b|268396|SH3 and PX domains 2B	AK154898|Sh3pxd2b|268396|SH3 and PX domains 2B	AB430861|Sh3pxd2b|268396|SH3 and PX domains 2B
mm9_v1_chr15_+_25870456_25870763	1.04549	GUCAGUU	AK167327|Fam134b|66270|family with sequence similarity 134, member B	AK146972|Fam134b|66270|family with sequence similarity 134, member B	BC019494|Fam134b|66270|family with sequence similarity 134, member B	NM_025459|Fam134b|66270|family with sequence similarity 134, member B	BC054415|Fam134b|66270|family with sequence similarity 134, member B
mm9_v1_chr11_+_43495499_43495538	1.0445	GUCAGUU	NM_001164231|Pwwp2a|70802|PWWP domain containing 2A	NM_027557|Pwwp2a|70802|PWWP domain containing 2A	AK173305|Pwwp2a|70802|PWWP domain containing 2A
mm9_v1_chr9_+_108997946_108997990	1.04337	GUCAGUU	NM_172775|Plxnb1|235611|plexin B1
mm9_v1_chr16_+_20517042_20517258	1.04294	GUCAGUU	U41285|Dvl3|13544|dishevelled 3, dsh homolog (Drosophila)	AK052151|Dvl3|13544|dishevelled 3, dsh homolog (Drosophila)	NM_007889|Dvl3|13544|dishevelled 3, dsh homolog (Drosophila)	BC033414|Dvl3|13544|dishevelled 3, dsh homolog (Drosophila)
mm9_v1_chr17_-_27341343_27341419	1.03954	GUCAGUU	AY640307|Lemd2|224640|LEM domain containing 2	AK143224|Lemd2|224640|LEM domain containing 2	NM_146075|Lemd2|224640|LEM domain containing 2
mm9_v1_chr1_+_194014677_194014800	1.03674	GUCAGUU	AK140193|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_001038607|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_010600|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	U04294|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109012|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109013|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm9_v1_chr7_+_125999265_125999288	1.019	GUCAGUU	AK132322|Iqck|434232|IQ motif containing K	AK143223|Iqck|434232|IQ motif containing K	AK138400|Iqck|434232|IQ motif containing K	NM_001081446|Iqck|434232|IQ motif containing K
mm9_v1_chr1_+_17717497_17717562	1.01425	GUCAGUU	AK133870|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1	AK137611|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1	NM_031402|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1	AF329198|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1	AK134273|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1
mm9_v1_chr3_-_19062922_19063101	1.01301	GUCAGUU	AK208595|Armc1|74252|armadillo repeat containing 1	AK213606|Armc1|74252|armadillo repeat containing 1	AK144184|Armc1|74252|armadillo repeat containing 1	AK079299|Armc1|74252|armadillo repeat containing 1	AK167233|Armc1|74252|armadillo repeat containing 1	BC051067|Armc1|74252|armadillo repeat containing 1	BC021451|Armc1|74252|armadillo repeat containing 1	NM_028840|Armc1|74252|armadillo repeat containing 1	AK009402|Armc1|74252|armadillo repeat containing 1	AK082783|Armc1|74252|armadillo repeat containing 1	AK145993|Armc1|74252|armadillo repeat containing 1
mm9_v1_chrX_-_20527674_20527737	1.00105	GUCAGUU	BC054474|Elk1|13712|ELK1, member of ETS oncogene family	AK132354|Elk1|13712|ELK1, member of ETS oncogene family	NM_007922|Elk1|13712|ELK1, member of ETS oncogene family	AK082260|Elk1|13712|ELK1, member of ETS oncogene family
mm9_v1_chr15_+_96117952_96118007	0.996258	GUCAGUU	AK007269|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)	NM_175251|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)
mm9_v1_chr11_-_69648350_69648356	0.994138	GUCAGUU	AK173159|Nlgn2|216856|neuroligin 2	NM_198862|Nlgn2|216856|neuroligin 2
mm9_v1_chr4_-_115453621_115453638	0.993424	GUCAGUU	BC119474|4930544O15Rik|75173|RIKEN cDNA 4930544O15 gene	BC152479|4930544O15Rik|75173|RIKEN cDNA 4930544O15 gene	AK016041|4930544O15Rik|75173|RIKEN cDNA 4930544O15 gene	NM_029196|4930544O15Rik|75173|RIKEN cDNA 4930544O15 gene
mm9_v1_chr9_+_55889639_55889686	0.984028	GUCAGUU	AK041996|Rcn2|26611|reticulocalbin 2	NM_011992|Rcn2|26611|reticulocalbin 2	AF049125|Rcn2|26611|reticulocalbin 2	AK077486|Rcn2|26611|reticulocalbin 2	AK077734|Rcn2|26611|reticulocalbin 2	AK079156|Rcn2|26611|reticulocalbin 2	AK169765|Rcn2|26611|reticulocalbin 2	AK078106|Rcn2|26611|reticulocalbin 2	BC132320|Rcn2|26611|reticulocalbin 2	BC145668|Rcn2|26611|reticulocalbin 2
mm9_v1_chr8_+_125935441_125935463	0.981217	GUCAGUU	AK012528|Tubb3|22152|tubulin, beta 3	AK051298|Tubb3|22152|tubulin, beta 3	AK082942|Tubb3|22152|tubulin, beta 3	AK149014|Tubb3|22152|tubulin, beta 3	BC088749|Tubb3|22152|tubulin, beta 3	BC031357|Tubb3|22152|tubulin, beta 3	NM_023279|Tubb3|22152|tubulin, beta 3
mm9_v1_chr16_-_18289209_18289363	0.980859	GUCAGUU	AK086233|Dgcr8|94223|DiGeorge syndrome critical region gene 8	AB086857|Dgcr8|94223|DiGeorge syndrome critical region gene 8	NM_033324|Dgcr8|94223|DiGeorge syndrome critical region gene 8	BC062919|Dgcr8|94223|DiGeorge syndrome critical region gene 8	BC066118|Dgcr8|94223|DiGeorge syndrome critical region gene 8
mm9_v1_chr4_+_33219530_33219530	0.980698	GUCAGUU	AF024620|Gabrr1|14408|gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	NM_008075|Gabrr1|14408|gamma-aminobutyric acid (GABA) C receptor, subunit rho 1
mm9_v1_chr1_+_55462764_55462802	0.9764	GUCAGUU	AK083136|Plcl1|227120|phospholipase C-like 1	AK161943|Plcl1|227120|phospholipase C-like 1	NM_001114663|Plcl1|227120|phospholipase C-like 1	AK135610|Plcl1|227120|phospholipase C-like 1
mm9_v1_chr11_-_54674080_54674223	0.973092	GUCAGUU	NM_029327|Lyrm7|75530|LYR motif containing 7	BC139403|Lyrm7|75530|LYR motif containing 7	BC139406|Lyrm7|75530|LYR motif containing 7
mm9_v1_chr5_-_124171015_124171067	0.968416	GUCAGUU	AK156770|Zcchc8|70650|zinc finger, CCHC domain containing 8	AK032349|Zcchc8|70650|zinc finger, CCHC domain containing 8	NM_027494|Zcchc8|70650|zinc finger, CCHC domain containing 8
mm9_v1_chr4_+_15192892_15192977	0.959005	GUCAGUU	AK156282|Tmem64|100201|transmembrane protein 64	NM_181401|Tmem64|100201|transmembrane protein 64	AY147882|Tmem64|100201|transmembrane protein 64	BC030341|Tmem64|100201|transmembrane protein 64
mm9_v1_chr11_+_6963421_6963491	0.956801	GUCAGUU	NM_009622|Adcy1|432530|adenylate cyclase 1
mm9_v1_chr12_-_106923394_106923487	0.951207	GUCAGUU	AK085790|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	AK083213|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	BC062182|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	AK086802|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	NM_029654|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)
mm9_v1_chr2_+_167757825_167757866	0.947481	GUCAGUU	AK157431|Ptpn1|19246|protein tyrosine phosphatase, non-receptor type 1	NM_011201|Ptpn1|19246|protein tyrosine phosphatase, non-receptor type 1	AK165567|Ptpn1|19246|protein tyrosine phosphatase, non-receptor type 1
mm9_v1_chrX_+_78315963_78315999	0.945028	GUCAGUU	NM_138751|Tmem47|192216|transmembrane protein 47
mm9_v1_chr9_-_108208272_108208302	0.929622	GUCAGUU	BC019397|Tcta|102791|T-cell leukemia translocation altered gene	NM_133986|Tcta|102791|T-cell leukemia translocation altered gene
mm9_v1_chr6_+_81991613_81991706	0.92451	GUCAGUU	AK145140|Fam176a|232146|family with sequence similarity 176, member A	NM_145570|Fam176a|232146|family with sequence similarity 176, member A	BC027150|Fam176a|232146|family with sequence similarity 176, member A	AK166504|Fam176a|232146|family with sequence similarity 176, member A	BC014699|Fam176a|232146|family with sequence similarity 176, member A
mm9_v1_chr3_-_113332817_113333068	0.923766	GUCAGUU	AK173272|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	AK179549|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	AK187884|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	AK084372|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	AK013288|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	AK161974|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	AK163729|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	AK134241|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	BC043695|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	AK161063|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	NM_001038696|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3	NM_026043|Rnpc3|67225|RNA-binding region (RNP1, RRM) containing 3
mm9_v1_chr16_+_17070249_17070422	0.922961	GUCAGUU	AK011452|Ypel1|106369|yippee-like 1 (Drosophila)	AK076063|Ypel1|106369|yippee-like 1 (Drosophila)	AK133401|Ypel1|106369|yippee-like 1 (Drosophila)	AF190624|Ypel1|106369|yippee-like 1 (Drosophila)	BC049737|Ypel1|106369|yippee-like 1 (Drosophila)	AK139453|Ypel1|106369|yippee-like 1 (Drosophila)	AK006137|Ypel1|106369|yippee-like 1 (Drosophila)	AK006858|Ypel1|106369|yippee-like 1 (Drosophila)	AK005955|Ypel1|106369|yippee-like 1 (Drosophila)	AK006049|Ypel1|106369|yippee-like 1 (Drosophila)	AK019819|Ypel1|106369|yippee-like 1 (Drosophila)	AK014931|Ypel1|106369|yippee-like 1 (Drosophila)	NM_023249|Ypel1|106369|yippee-like 1 (Drosophila)	AK018910|Ypel1|106369|yippee-like 1 (Drosophila)	AK006505|Ypel1|106369|yippee-like 1 (Drosophila)
mm9_v1_chr12_+_66137309_66137322	0.921558	GUCAGUU	AK154170|Prpf39|328110|PRP39 pre-mRNA processing factor 39 homolog (yeast)	NM_177806|Prpf39|328110|PRP39 pre-mRNA processing factor 39 homolog (yeast)
mm9_v1_chr10_+_66590005_66590005	0.915732	GUCAGUU	NM_207221|Jmjd1c|108829|jumonji domain containing 1C
mm9_v1_chr9_+_32503600_32503674	0.909662	GUCAGUU	NM_001038642|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	NM_011808|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	BC010588|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	AK168247|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain
mm9_v1_chr14_+_70953862_70953862	0.908531	GUCAGUU	BC049182|Hr|15460|hairless	NM_021877|Hr|15460|hairless
mm9_v1_chr11_+_60351159_60351225	0.904261	GUCAGUU	NM_172943|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)
mm9_v1_chr6_-_24614975_24615061	0.888967	GUCAGUU	AK143969|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	AK014104|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	BC058642|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	NM_001167745|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	NM_028459|Wasl|73178|Wiskott-Aldrich syndrome-like (human)
mm9_v1_chr6_+_90319485_90319663	0.868194	GUCAGUU	AK081005|Zxdc|80292|ZXD family zinc finger C	NM_030260|Zxdc|80292|ZXD family zinc finger C	NM_173002|Zxdc|80292|ZXD family zinc finger C	BC003332|Zxdc|80292|ZXD family zinc finger C	AK042190|Zxdc|80292|ZXD family zinc finger C	AK044529|Zxdc|80292|ZXD family zinc finger C	AK030287|Zxdc|80292|ZXD family zinc finger C	AK047538|Zxdc|80292|ZXD family zinc finger C	AK042392|Zxdc|80292|ZXD family zinc finger C	AK080307|Zxdc|80292|ZXD family zinc finger C	AK044429|Zxdc|80292|ZXD family zinc finger C	AK044948|Zxdc|80292|ZXD family zinc finger C	AK169517|Zxdc|80292|ZXD family zinc finger C	AK047079|Zxdc|80292|ZXD family zinc finger C	AK137347|Zxdc|80292|ZXD family zinc finger C	AK141613|Zxdc|80292|ZXD family zinc finger C
mm9_v1_chr6_-_83391623_83391671	0.857828	GUCAGUU	AK044758|Tet3|194388|tet oncogene family member 3	AK046543|Tet3|194388|tet oncogene family member 3	AK046552|Tet3|194388|tet oncogene family member 3	AK046553|Tet3|194388|tet oncogene family member 3	NM_183138|Tet3|194388|tet oncogene family member 3
mm9_v1_chr18_+_42213320_42213410	0.853655	GUCAGUU	AK033601|Sh3rf2|269016|SH3 domain containing ring finger 2	AK029168|Sh3rf2|269016|SH3 domain containing ring finger 2	NM_001146299|Sh3rf2|269016|SH3 domain containing ring finger 2	NM_172966|Sh3rf2|269016|SH3 domain containing ring finger 2	BC137955|Sh3rf2|269016|SH3 domain containing ring finger 2	BC145060|Sh3rf2|269016|SH3 domain containing ring finger 2
mm9_v1_chr6_-_128776236_128776348	0.852754	GUCAGUU	X64719|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	AF338321|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	AF338322|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	DQ237928|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	AF354259|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	AF354260|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	AK030702|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	BC132126|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	BC132128|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	AF324826|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	AF342896|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	M77677|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	BC055379|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	BC100580|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	AK138766|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	AK041228|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	NM_030599|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B	AK169820|Klrb1b|80782|killer cell lectin-like receptor subfamily B member 1B
mm9_v1_chr14_-_61656804_61656823	0.852614	GUCAGUU	NM_001164155|Tnfrsf19|29820|tumor necrosis factor receptor superfamily, member 19
mm9_v1_chr6_-_30643681_30643723	0.846224	GUCAGUU	BC031892|Tsga14|83922|testis specific gene A14	NM_031998|Tsga14|83922|testis specific gene A14	AK161461|Tsga14|83922|testis specific gene A14	AK166974|Tsga14|83922|testis specific gene A14	AK019270|Tsga14|83922|testis specific gene A14	AK132495|Tsga14|83922|testis specific gene A14	AJ278891|Tsga14|83922|testis specific gene A14	AK006059|Tsga14|83922|testis specific gene A14	AK170213|Tsga14|83922|testis specific gene A14
mm9_v1_chr6_-_141895336_141895482	0.844511	GUCAGUU	AK165360|Slco1a1|28248|solute carrier organic anion transporter family, member 1a1	NM_013797|Slco1a1|28248|solute carrier organic anion transporter family, member 1a1
mm9_v1_chr6_-_116623789_116623853	0.841341	GUCAGUU	AK139284|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK170955|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	BC023245|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK089460|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	BC060709|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK036528|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK053578|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK151561|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK152639|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK164357|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK160584|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK171198|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	NM_178045|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4
mm9_v1_chr9_-_40812668_40812668	0.837389	GUCAGUU	AF001104|Crtam|54698|cytotoxic and regulatory T cell molecule	BC117715|Crtam|54698|cytotoxic and regulatory T cell molecule	BC117716|Crtam|54698|cytotoxic and regulatory T cell molecule	NM_019465|Crtam|54698|cytotoxic and regulatory T cell molecule
mm9_v1_chr4_-_142802606_142802625	0.834807	GUCAGUU	AK087820|Prdm2|110593|PR domain containing 2, with ZNF domain	NM_001081355|Prdm2|110593|PR domain containing 2, with ZNF domain
mm9_v1_chr9_+_3404047_3404117	0.833214	GUCAGUU	BC125483|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC125485|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK083386|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK045423|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	NM_027545|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK014327|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK031423|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC100536|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC051218|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC043480|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)
mm9_v1_chr3_+_121747377_121747377	0.830685	GUCAGUU	AF000149|Abca4|11304|ATP-binding cassette, sub-family A (ABC1), member 4	BC057853|Abca4|11304|ATP-binding cassette, sub-family A (ABC1), member 4	NM_007378|Abca4|11304|ATP-binding cassette, sub-family A (ABC1), member 4
mm9_v1_chr9_-_53344748_53344787	0.830447	GUCAGUU	AK031702|Atm|11920|ataxia telangiectasia mutated homolog (human)	NM_007499|Atm|11920|ataxia telangiectasia mutated homolog (human)	AK139863|Atm|11920|ataxia telangiectasia mutated homolog (human)
mm9_v1_chr13_+_20277293_20277293	0.823381	GUCAGUU	AF398883|Elmo1|140580|engulfment and cell motility 1, ced-12 homolog (C. elegans)	NM_080288|Elmo1|140580|engulfment and cell motility 1, ced-12 homolog (C. elegans)
mm9_v1_chr3_+_89635281_89635319	0.817565	GUCAGUU	AK034662|She|214547|src homology 2 domain-containing transforming protein E	AK157580|She|214547|src homology 2 domain-containing transforming protein E	NM_172530|She|214547|src homology 2 domain-containing transforming protein E	BC109362|She|214547|src homology 2 domain-containing transforming protein E	BC109363|She|214547|src homology 2 domain-containing transforming protein E
mm9_v1_chr14_+_27399015_27399092	0.815473	GUCAGUU	AK054295|Fam116a|211922|family with sequence similarity 116, member A	NM_001134465|Fam116a|211922|family with sequence similarity 116, member A	NM_145969|Fam116a|211922|family with sequence similarity 116, member A	AK132219|Fam116a|211922|family with sequence similarity 116, member A	AK131163|Fam116a|211922|family with sequence similarity 116, member A	BC025603|Fam116a|211922|family with sequence similarity 116, member A	AK161908|Fam116a|211922|family with sequence similarity 116, member A	AK054197|Fam116a|211922|family with sequence similarity 116, member A
mm9_v1_chr11_-_86171026_86171057	0.814437	GUCAGUU	NM_001080931|Med13|327987|mediator complex subunit 13
mm9_v1_chr19_+_3323262_3323319	0.811754	GUCAGUU	NM_013495|Cpt1a|12894|carnitine palmitoyltransferase 1a, liver	BC054791|Cpt1a|12894|carnitine palmitoyltransferase 1a, liver
mm9_v1_chrX_-_34529689_34529693	0.793347	GUCAGUU	NM_001177324|Sept6|56526|septin 6	NM_019942|Sept6|56526|septin 6
mm9_v1_chr15_+_100701068_100701116	0.790639	GUCAGUU	NM_001077499|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AK158609|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr15_+_100766701_100766755	0.786119	GUCAGUU	NM_011323|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	U26707|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AF049617|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr8_+_63111621_63111675	0.779403	GUCAGUU	AK089654|Mfap3l|71306|microfibrillar-associated protein 3-like	NM_027756|Mfap3l|71306|microfibrillar-associated protein 3-like	BC095950|Mfap3l|71306|microfibrillar-associated protein 3-like
mm9_v1_chr4_+_141349526_141349778	0.769408	GUCAGUU	BC056447|Casp9|12371|caspase 9	NM_015733|Casp9|12371|caspase 9	AK156500|Casp9|12371|caspase 9	AK085095|Casp9|12371|caspase 9	BC056372|Casp9|12371|caspase 9	AK162863|Casp9|12371|caspase 9	AK085561|Casp9|12371|caspase 9	AK154495|Casp9|12371|caspase 9	AB019600|Casp9|12371|caspase 9	AB019601|Casp9|12371|caspase 9	CT010400|Casp9|12371|caspase 9	AK085152|Casp9|12371|caspase 9
mm9_v1_chr3_-_138738152_138738164	0.768682	GUCAGUU	AK158465|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	NM_001040690|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	NM_145544|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	AK172052|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1
mm9_v1_chr2_+_173485260_173485380	0.767418	GUCAGUU	AK147619|Rab22a|19334|RAB22A, member RAS oncogene family	AK150617|Rab22a|19334|RAB22A, member RAS oncogene family	AK146594|Rab22a|19334|RAB22A, member RAS oncogene family	NM_024436|Rab22a|19334|RAB22A, member RAS oncogene family	AK021398|Rab22a|19334|RAB22A, member RAS oncogene family	AK149200|Rab22a|19334|RAB22A, member RAS oncogene family	BC006596|Rab22a|19334|RAB22A, member RAS oncogene family	AK014407|Rab22a|19334|RAB22A, member RAS oncogene family	AK031667|Rab22a|19334|RAB22A, member RAS oncogene family
mm9_v1_chr5_+_118619772_118619918	0.76023	GUCAGUU	BC128022|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)	D83698|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)	NM_007545|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)
mm9_v1_chrX_-_39265047_39265129	0.753687	GUCAGUU	AK140950|Thoc2|331401|THO complex 2	AK138023|Thoc2|331401|THO complex 2	NM_001033422|Thoc2|331401|THO complex 2	AK137966|Thoc2|331401|THO complex 2
mm9_v1_chr14_-_61665691_61665691	0.752176	GUCAGUU	NM_013869|Tnfrsf19|29820|tumor necrosis factor receptor superfamily, member 19
mm9_v1_chr10_+_98377759_98377828	0.747774	GUCAGUU	AK133920|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	NM_026482|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	AK170163|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	BC024831|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	AK170926|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chr11_+_34214821_34214821	0.747667	GUCAGUU	BC072605|Fam196b|574403|family with sequence similarity 196, member B	NM_001025382|Fam196b|574403|family with sequence similarity 196, member B
mm9_v1_chr19_-_46470175_46470258	0.743784	GUCAGUU	BC007131|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK010632|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AB010297|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	NM_016860|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK019518|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK168889|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK088062|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK167450|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK162248|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
mm9_v1_chr11_+_78317000_78317014	0.740424	GUCAGUU	AK139838|Sebox|18292|SEBOX homeobox	AK143429|Sebox|18292|SEBOX homeobox	BC098184|Sebox|18292|SEBOX homeobox	NM_008759|Sebox|18292|SEBOX homeobox
mm9_v1_chr1_+_132628552_132628703	0.7275	GUCAGUU	AK053179|AA986860|212439|expressed sequence AA986860	NM_177604|AA986860|212439|expressed sequence AA986860	AK028957|AA986860|212439|expressed sequence AA986860	AK086121|AA986860|212439|expressed sequence AA986860
mm9_v1_chr5_+_144861227_144861325	0.71164	GUCAGUU	AK158724|Lmtk2|231876|lemur tyrosine kinase 2	NM_001081109|Lmtk2|231876|lemur tyrosine kinase 2
mm9_v1_chr12_+_88367442_88367513	0.71057	GUCAGUU	AK034410|Tmem63c|217733|transmembrane protein 63c	AK043536|Tmem63c|217733|transmembrane protein 63c	BC056936|Tmem63c|217733|transmembrane protein 63c	BC057088|Tmem63c|217733|transmembrane protein 63c	NM_172583|Tmem63c|217733|transmembrane protein 63c
mm9_v1_chr15_+_44027680_44027795	0.703387	GUCAGUU	AK134591|Trhr|22045|thyrotropin releasing hormone receptor	NM_013696|Trhr|22045|thyrotropin releasing hormone receptor	M59811|Trhr|22045|thyrotropin releasing hormone receptor	M94384|Trhr|22045|thyrotropin releasing hormone receptor	BC109005|Trhr|22045|thyrotropin releasing hormone receptor	BC109006|Trhr|22045|thyrotropin releasing hormone receptor	BC128269|Trhr|22045|thyrotropin releasing hormone receptor
mm9_v1_chr16_+_18348311_18348366	0.698287	GUCAGUU	BC052393|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome	BC056980|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome	NM_033474|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome
mm9_v1_chr8_+_63134353_63134353	0.697574	GUCAGUU	AK016959|Mfap3l|71306|microfibrillar-associated protein 3-like	NM_001177882|Mfap3l|71306|microfibrillar-associated protein 3-like
mm9_v1_chr4_+_21858472_21858503	0.695436	GUCAGUU	AK144924|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	NM_175234|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK081616|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK082464|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK018081|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene
mm9_v1_chr5_+_77269623_77269643	0.693259	GUCAGUU	AK030106|C530008M17Rik|320827|RIKEN cDNA C530008M17 gene	NM_001163793|C530008M17Rik|320827|RIKEN cDNA C530008M17 gene	AK015929|C530008M17Rik|320827|RIKEN cDNA C530008M17 gene
mm9_v1_chr7_-_128217980_128218068	0.679202	GUCAGUU	AK156382|Igsf6|80719|immunoglobulin superfamily, member 6	AK040569|Igsf6|80719|immunoglobulin superfamily, member 6	AK163058|Igsf6|80719|immunoglobulin superfamily, member 6	AK151417|Igsf6|80719|immunoglobulin superfamily, member 6	AK152186|Igsf6|80719|immunoglobulin superfamily, member 6	BC057951|Igsf6|80719|immunoglobulin superfamily, member 6	AJ278575|Igsf6|80719|immunoglobulin superfamily, member 6	NM_030691|Igsf6|80719|immunoglobulin superfamily, member 6
mm9_v1_chr3_+_130813214_130813388	0.677879	GUCAGUU	BC057543|Lef1|16842|lymphoid enhancer binding factor 1	AK131979|Lef1|16842|lymphoid enhancer binding factor 1	AK158769|Lef1|16842|lymphoid enhancer binding factor 1	NM_010703|Lef1|16842|lymphoid enhancer binding factor 1	X58636|Lef1|16842|lymphoid enhancer binding factor 1
mm9_v1_chr16_-_17576750_17576790	0.675772	GUCAGUU	AK030586|Slc7a4|224022|solute carrier family 7 (cationic amino acid transporter, y+ system), member 4	AK043772|Slc7a4|224022|solute carrier family 7 (cationic amino acid transporter, y+ system), member 4	NM_144852|Slc7a4|224022|solute carrier family 7 (cationic amino acid transporter, y+ system), member 4
mm9_v1_chr11_-_86358252_86358308	0.670019	GUCAGUU	BC038491|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	BC071244|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK032724|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK085687|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK135716|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK163258|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	NM_001114334|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	NM_028259|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1
mm9_v1_chr3_-_84386546_84386619	0.664953	GUCAGUU	NM_001081093|Arfip1|99889|ADP-ribosylation factor interacting protein 1
mm9_v1_chr1_+_145587576_145587576	0.664521	GUCAGUU	AK142654|Glrx2|69367|glutaredoxin 2 (thioltransferase)	NM_001038594|Glrx2|69367|glutaredoxin 2 (thioltransferase)
mm9_v1_chr19_+_10257363_10257524	0.659113	GUCAGUU	NM_146094|Fads1|76267|fatty acid desaturase 1	BC026831|Fads1|76267|fatty acid desaturase 1	AK154367|Fads1|76267|fatty acid desaturase 1	BC022139|Fads1|76267|fatty acid desaturase 1	BC026848|Fads1|76267|fatty acid desaturase 1	AB072976|Fads1|76267|fatty acid desaturase 1	AK080706|Fads1|76267|fatty acid desaturase 1	AF061504|Fads1|76267|fatty acid desaturase 1	AK083959|Fads1|76267|fatty acid desaturase 1	BC063053|Fads1|76267|fatty acid desaturase 1
mm9_v1_chr8_-_123191878_123192011	0.65841	GUCAGUU	AK042704|Cox4nb|18117|COX4 neighbor	AK148190|Cox4nb|18117|COX4 neighbor	BC009103|Cox4nb|18117|COX4 neighbor	AK143131|Cox4nb|18117|COX4 neighbor	AK161438|Cox4nb|18117|COX4 neighbor	AF052621|Cox4nb|18117|COX4 neighbor	AK164130|Cox4nb|18117|COX4 neighbor	NM_010926|Cox4nb|18117|COX4 neighbor
mm9_v1_chr6_-_149050201_149050210	0.656996	GUCAGUU	NM_177192|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr6_-_85911593_85911675	0.654605	GUCAGUU	BC067028|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	AK040232|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	AK079991|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	AK081629|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	AK088941|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	NM_028099|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
mm9_v1_chr3_+_107397948_107398023	0.640585	GUCAGUU	NM_007441|Alx3|11694|aristaless-like homeobox 3	U96109|Alx3|11694|aristaless-like homeobox 3	AK142019|Alx3|11694|aristaless-like homeobox 3
mm9_v1_chr3_+_82161952_82161996	0.63047	GUCAGUU	AK138540|Mtap9|213582|microtubule-associated protein 9	AK038737|Mtap9|213582|microtubule-associated protein 9	NM_001081230|Mtap9|213582|microtubule-associated protein 9
mm9_v1_chr1_+_158488917_158488917	0.628307	GUCAGUU	NM_001136104|Abl2|11352|v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)	NM_009595|Abl2|11352|v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)
mm9_v1_chr18_+_32322742_32322855	0.622691	GUCAGUU	AK036364|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	NM_011946|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	AK143367|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	AK050667|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	U43186|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2
mm9_v1_chr2_+_4638844_4638934	0.617461	GUCAGUU	AK053896|Bend7|209645|BEN domain containing 7	NM_001190400|Bend7|209645|BEN domain containing 7	NM_178663|Bend7|209645|BEN domain containing 7	AK042822|Bend7|209645|BEN domain containing 7
mm9_v1_chr7_-_74790088_74790121	0.613919	GUCAGUU	AK004904|Lrrc28|67867|leucine rich repeat containing 28	AK008713|Lrrc28|67867|leucine rich repeat containing 28	AK159417|Lrrc28|67867|leucine rich repeat containing 28	AK050154|Lrrc28|67867|leucine rich repeat containing 28	AK077270|Lrrc28|67867|leucine rich repeat containing 28	NM_027413|Lrrc28|67867|leucine rich repeat containing 28	NM_175124|Lrrc28|67867|leucine rich repeat containing 28
mm9_v1_chr14_+_55244146_55244163	0.606599	GUCAGUU	AK162727|Psmb11|73902|proteasome (prosome, macropain) subunit, beta type, 11	NM_175204|Psmb11|73902|proteasome (prosome, macropain) subunit, beta type, 11	AK017902|Psmb11|73902|proteasome (prosome, macropain) subunit, beta type, 11	AK037368|Psmb11|73902|proteasome (prosome, macropain) subunit, beta type, 11	AK041393|Psmb11|73902|proteasome (prosome, macropain) subunit, beta type, 11	BC117732|Psmb11|73902|proteasome (prosome, macropain) subunit, beta type, 11	BC117733|Psmb11|73902|proteasome (prosome, macropain) subunit, beta type, 11	AB299436|Psmb11|73902|proteasome (prosome, macropain) subunit, beta type, 11
mm9_v1_chr7_-_35841565_35841620	0.605659	GUCAGUU	NM_009884|Cebpg|12611|CCAAT/enhancer binding protein (C/EBP), gamma	S80556|Cebpg|12611|CCAAT/enhancer binding protein (C/EBP), gamma
mm9_v1_chr1_+_145586478_145586478	0.587589	GUCAGUU	AK005853|Glrx2|69367|glutaredoxin 2 (thioltransferase)	NM_001038593|Glrx2|69367|glutaredoxin 2 (thioltransferase)
mm9_v1_chr1_+_179375951_179375951	0.587484	GUCAGUU	AF140224|Zfp238|30928|zinc finger protein 238	NM_013915|Zfp238|30928|zinc finger protein 238
mm9_v1_chr19_+_45438212_45438344	0.576945	GUCAGUU	NM_001037758|Btrc|12234|beta-transducin repeat containing protein	NM_009771|Btrc|12234|beta-transducin repeat containing protein	AK220183|Btrc|12234|beta-transducin repeat containing protein	AK145624|Btrc|12234|beta-transducin repeat containing protein	AK052317|Btrc|12234|beta-transducin repeat containing protein	AK083257|Btrc|12234|beta-transducin repeat containing protein	AF081887|Btrc|12234|beta-transducin repeat containing protein	AK032221|Btrc|12234|beta-transducin repeat containing protein	AK145091|Btrc|12234|beta-transducin repeat containing protein	BC052879|Btrc|12234|beta-transducin repeat containing protein	BC003989|Btrc|12234|beta-transducin repeat containing protein	AF099932|Btrc|12234|beta-transducin repeat containing protein	AF110396|Btrc|12234|beta-transducin repeat containing protein	AF112979|Btrc|12234|beta-transducin repeat containing protein	AK180045|Btrc|12234|beta-transducin repeat containing protein	AK188552|Btrc|12234|beta-transducin repeat containing protein	AK189588|Btrc|12234|beta-transducin repeat containing protein
mm9_v1_chr8_-_127275549_127275749	0.573493	GUCAGUU	BC023460|Fam89a|69627|family with sequence similarity 89, member A	BC115734|Fam89a|69627|family with sequence similarity 89, member A	BC115819|Fam89a|69627|family with sequence similarity 89, member A	NM_001081120|Fam89a|69627|family with sequence similarity 89, member A
mm9_v1_chr7_+_62090614_62090614	0.569546	GUCAGUU	AY164459|Luzp2|233271|leucine zipper protein 2	NM_178705|Luzp2|233271|leucine zipper protein 2
mm9_v1_chr13_-_100286521_100286556	0.566262	GUCAGUU	NM_008634|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr5_+_28643698_28643741	0.549715	GUCAGUU	NM_028234|Rbm33|381626|RNA binding motif protein 33	AK014289|Rbm33|381626|RNA binding motif protein 33
mm9_v1_chr4_+_6292817_6292904	0.547514	GUCAGUU	AK169415|Sdcbp|53378|syndecan binding protein	NM_001098227|Sdcbp|53378|syndecan binding protein	NM_016807|Sdcbp|53378|syndecan binding protein	AK033412|Sdcbp|53378|syndecan binding protein	AF003693|Sdcbp|53378|syndecan binding protein	AK150721|Sdcbp|53378|syndecan binding protein	AK152080|Sdcbp|53378|syndecan binding protein	AK159677|Sdcbp|53378|syndecan binding protein	AK150623|Sdcbp|53378|syndecan binding protein	AK152552|Sdcbp|53378|syndecan binding protein	AK153112|Sdcbp|53378|syndecan binding protein	AK169219|Sdcbp|53378|syndecan binding protein	AK045668|Sdcbp|53378|syndecan binding protein	AK168004|Sdcbp|53378|syndecan binding protein	AK028429|Sdcbp|53378|syndecan binding protein	AK146085|Sdcbp|53378|syndecan binding protein	AK150544|Sdcbp|53378|syndecan binding protein	AK150996|Sdcbp|53378|syndecan binding protein	AK151050|Sdcbp|53378|syndecan binding protein	AK152017|Sdcbp|53378|syndecan binding protein	AK152434|Sdcbp|53378|syndecan binding protein	AK153042|Sdcbp|53378|syndecan binding protein	AK159538|Sdcbp|53378|syndecan binding protein	AK169687|Sdcbp|53378|syndecan binding protein	AK171162|Sdcbp|53378|syndecan binding protein	AK150707|Sdcbp|53378|syndecan binding protein	AK152001|Sdcbp|53378|syndecan binding protein	AK152577|Sdcbp|53378|syndecan binding protein	AK152855|Sdcbp|53378|syndecan binding protein	AK152109|Sdcbp|53378|syndecan binding protein	AK150801|Sdcbp|53378|syndecan binding protein	AK014678|Sdcbp|53378|syndecan binding protein	AK150321|Sdcbp|53378|syndecan binding protein	AK150661|Sdcbp|53378|syndecan binding protein	AK150736|Sdcbp|53378|syndecan binding protein	AK159124|Sdcbp|53378|syndecan binding protein	AK165657|Sdcbp|53378|syndecan binding protein	AK167513|Sdcbp|53378|syndecan binding protein	AK168777|Sdcbp|53378|syndecan binding protein	BC019400|Sdcbp|53378|syndecan binding protein	AK150278|Sdcbp|53378|syndecan binding protein	AF077527|Sdcbp|53378|syndecan binding protein	AK159323|Sdcbp|53378|syndecan binding protein
mm9_v1_chr4_+_87740516_87740554	0.543424	GUCAGUU	NM_001081184|BC057079|230393|cDNA sequence BC057079	AK164030|BC057079|230393|cDNA sequence BC057079
mm9_v1_chr1_+_145586675_145586780	0.539269	GUCAGUU	NM_001038592|Glrx2|69367|glutaredoxin 2 (thioltransferase)	NM_023505|Glrx2|69367|glutaredoxin 2 (thioltransferase)	BC065387|Glrx2|69367|glutaredoxin 2 (thioltransferase)	AF380337|Glrx2|69367|glutaredoxin 2 (thioltransferase)	BC132031|Glrx2|69367|glutaredoxin 2 (thioltransferase)	BC132033|Glrx2|69367|glutaredoxin 2 (thioltransferase)	BC145303|Glrx2|69367|glutaredoxin 2 (thioltransferase)	BC145304|Glrx2|69367|glutaredoxin 2 (thioltransferase)	AF276918|Glrx2|69367|glutaredoxin 2 (thioltransferase)
mm9_v1_chr16_-_92359659_92359712	0.536279	GUCAGUU	BC094276|Kcne1|16509|potassium voltage-gated channel, Isk-related subfamily, member 1	AK008938|Kcne1|16509|potassium voltage-gated channel, Isk-related subfamily, member 1	AK028907|Kcne1|16509|potassium voltage-gated channel, Isk-related subfamily, member 1	NM_008424|Kcne1|16509|potassium voltage-gated channel, Isk-related subfamily, member 1
mm9_v1_chr4_-_107791061_107791155	0.535187	GUCAGUU	M91458|Scp2|20280|sterol carrier protein 2, liver	BC034613|Scp2|20280|sterol carrier protein 2, liver	AK004860|Scp2|20280|sterol carrier protein 2, liver	BC018384|Scp2|20280|sterol carrier protein 2, liver	NM_011327|Scp2|20280|sterol carrier protein 2, liver
mm9_v1_chr3_+_32335072_32335127	0.529216	GUCAGUU	BC089038|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	NM_008839|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	BC130228|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	U03279|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm9_v1_chr6_+_29997972_29998071	0.524501	GUCAGUU	AK082580|Nrf1|18181|nuclear respiratory factor 1	NM_001164226|Nrf1|18181|nuclear respiratory factor 1	NM_001164227|Nrf1|18181|nuclear respiratory factor 1	NM_001164228|Nrf1|18181|nuclear respiratory factor 1	NM_001164230|Nrf1|18181|nuclear respiratory factor 1	NM_010938|Nrf1|18181|nuclear respiratory factor 1	AK029034|Nrf1|18181|nuclear respiratory factor 1	AK014494|Nrf1|18181|nuclear respiratory factor 1	AK036604|Nrf1|18181|nuclear respiratory factor 1	AK037697|Nrf1|18181|nuclear respiratory factor 1	AF098077|Nrf1|18181|nuclear respiratory factor 1	AF064728|Nrf1|18181|nuclear respiratory factor 1	AK050861|Nrf1|18181|nuclear respiratory factor 1	AK134483|Nrf1|18181|nuclear respiratory factor 1
mm9_v1_chrX_+_39421012_39421147	0.523774	GUCAGUU	NM_009688|Xiap|11798|X-linked inhibitor of apoptosis
mm9_v1_chr4_+_135979438_135979444	0.523473	GUCAGUU	AK082016|Htr1d|15552|5-hydroxytryptamine (serotonin) receptor 1D	NM_008309|Htr1d|15552|5-hydroxytryptamine (serotonin) receptor 1D	BC103532|Htr1d|15552|5-hydroxytryptamine (serotonin) receptor 1D	BC103536|Htr1d|15552|5-hydroxytryptamine (serotonin) receptor 1D	BC103535|Htr1d|15552|5-hydroxytryptamine (serotonin) receptor 1D
mm9_v1_chr4_+_17780628_17780643	0.520581	GUCAGUU	BC057926|Mmp16|17389|matrix metallopeptidase 16	NM_019724|Mmp16|17389|matrix metallopeptidase 16
mm9_v1_chr7_-_111656285_111656372	0.515173	GUCAGUU	AF220015|Trim30a|20128|tripartite motif-containing 30A	BC056631|Trim30d|209387|tripartite motif-containing 30D	AK164938|Trim30d|209387|tripartite motif-containing 30D	AK136456|Trim30d|209387|tripartite motif-containing 30D	NM_001167828|Trim30d|209387|tripartite motif-containing 30D	NM_199146|Trim30d|209387|tripartite motif-containing 30D
mm9_v1_chr10_-_126788827_126788884	0.49984	GUCAGUU	NM_008382|Inhbe|16326|inhibin beta E	U96386|Inhbe|16326|inhibin beta E
mm9_v1_chr4_-_126106749_126106807	0.494909	GUCAGUU	AK035042|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK083652|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK171118|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK154436|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	NM_153402|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3
mm9_v1_chr5_+_110564841_110564902	0.491604	GUCAGUU	NM_172717|Chfr|231600|checkpoint with forkhead and ring finger domains	AK039281|Chfr|231600|checkpoint with forkhead and ring finger domains	AK133154|Chfr|231600|checkpoint with forkhead and ring finger domains	AK154038|Chfr|231600|checkpoint with forkhead and ring finger domains	AK048930|Chfr|231600|checkpoint with forkhead and ring finger domains	AK147892|Chfr|231600|checkpoint with forkhead and ring finger domains	AK077629|Chfr|231600|checkpoint with forkhead and ring finger domains	AK148436|Chfr|231600|checkpoint with forkhead and ring finger domains	AK155295|Chfr|231600|checkpoint with forkhead and ring finger domains	AK155525|Chfr|231600|checkpoint with forkhead and ring finger domains	AK052473|Chfr|231600|checkpoint with forkhead and ring finger domains	AK169193|Chfr|231600|checkpoint with forkhead and ring finger domains	BC049792|Chfr|231600|checkpoint with forkhead and ring finger domains	AK169182|Chfr|231600|checkpoint with forkhead and ring finger domains
mm9_v1_chr6_-_53018566_53018625	0.48965	GUCAGUU	AK043767|Jazf1|231986|JAZF zinc finger 1	AK050474|Jazf1|231986|JAZF zinc finger 1	NM_173406|Jazf1|231986|JAZF zinc finger 1
mm9_v1_chr9_+_111174321_111174442	0.480656	GUCAGUU	BC018474|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	NM_175266|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK032284|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK043518|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK030084|Epm2aip1|77781|EPM2A (laforin) interacting protein 1
mm9_v1_chr5_-_128097687_128097794	0.475339	GUCAGUU	BC016233|Slc15a4|100561|solute carrier family 15, member 4	NM_133895|Slc15a4|100561|solute carrier family 15, member 4	AY050630|Slc15a4|100561|solute carrier family 15, member 4	AK048529|Slc15a4|100561|solute carrier family 15, member 4	AK154238|Slc15a4|100561|solute carrier family 15, member 4
mm9_v1_chr4_+_115500670_115500814	0.474738	GUCAGUU	AK084014|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	AK148476|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	NM_175308|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC099740|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC137587|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC137589|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)
mm9_v1_chr17_+_70911084_70911126	0.47234	GUCAGUU	NM_001128181|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK136926|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr19_+_4139744_4139808	0.469563	GUCAGUU	AK044225|Gpr152|269053|G protein-coupled receptor 152	AK044366|Gpr152|269053|G protein-coupled receptor 152	BC099681|Gpr152|269053|G protein-coupled receptor 152	NM_206973|Gpr152|269053|G protein-coupled receptor 152
mm9_v1_chr6_-_71212223_71212274	0.469216	GUCAGUU	AK027936|Smyd1|12180|SET and MYND domain containing 1	AK076266|Smyd1|12180|SET and MYND domain containing 1	AK142153|Smyd1|12180|SET and MYND domain containing 1	U76373|Smyd1|12180|SET and MYND domain containing 1	U76374|Smyd1|12180|SET and MYND domain containing 1	AK142252|Smyd1|12180|SET and MYND domain containing 1	BC076601|Smyd1|12180|SET and MYND domain containing 1	NM_001160127|Smyd1|12180|SET and MYND domain containing 1	NM_009762|Smyd1|12180|SET and MYND domain containing 1
mm9_v1_chr5_-_5380077_5380250	0.461884	GUCAGUU	AK129226|Cdk14|18647|cyclin-dependent kinase 14	AK016370|Cdk14|18647|cyclin-dependent kinase 14	AK051411|Cdk14|18647|cyclin-dependent kinase 14	AK083790|Cdk14|18647|cyclin-dependent kinase 14	AF033655|Cdk14|18647|cyclin-dependent kinase 14	AK051283|Cdk14|18647|cyclin-dependent kinase 14	AK045083|Cdk14|18647|cyclin-dependent kinase 14	NM_011074|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr2_+_90585526_90585673	0.461791	GUCAGUU	NM_018828|Fnbp4|55935|formin binding protein 4	U40750|Fnbp4|55935|formin binding protein 4
mm9_v1_chr9_-_65239349_65239458	0.458171	GUCAGUU	AK048611|Kbtbd13|74492|kelch repeat and BTB (POZ) domain containing 13	BC139793|Kbtbd13|74492|kelch repeat and BTB (POZ) domain containing 13	NM_028974|Kbtbd13|74492|kelch repeat and BTB (POZ) domain containing 13
mm9_v1_chr8_-_75094915_75095130	0.456701	GUCAGUU	BC037511|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK152451|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK152748|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK035786|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK151539|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	NM_172396|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AF140607|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	BC055692|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK009731|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK148562|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK149156|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK169625|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK018610|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	BC060963|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK206814|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene
mm9_v1_chr2_-_68309996_68310080	0.451543	GUCAGUU	AK017292|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AF099988|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	BC064443|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	NM_016866|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AK148456|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)
mm9_v1_chr13_-_107726930_107727002	0.442292	GUCAGUU	BC031900|Ipo11|76582|importin 11	BC029746|Ipo11|76582|importin 11	NM_029665|Ipo11|76582|importin 11
mm9_v1_chr8_+_63133900_63133900	0.442168	GUCAGUU	AK133407|Mfap3l|71306|microfibrillar-associated protein 3-like	NM_001177881|Mfap3l|71306|microfibrillar-associated protein 3-like
mm9_v1_chr15_-_36212893_36212934	0.437775	GUCAGUU	NM_013923|Rnf19a|30945|ring finger protein 19A
mm9_v1_chr3_+_9250566_9250566	0.435704	GUCAGUU	NM_177660|Zbtb10|229055|zinc finger and BTB domain containing 10
mm9_v1_chr1_+_94807981_94807981	0.419015	GUCAGUU	BC031789|Rnpepl1|108657|arginyl aminopeptidase (aminopeptidase B)-like 1	NM_181405|Rnpepl1|108657|arginyl aminopeptidase (aminopeptidase B)-like 1
mm9_v1_chr5_+_91223558_91223596	0.415155	GUCAGUU	AK142955|Cxcl15|20309|chemokine (C-X-C motif) ligand 15	NM_011339|Cxcl15|20309|chemokine (C-X-C motif) ligand 15	BC061138|Cxcl15|20309|chemokine (C-X-C motif) ligand 15	AF082859|Cxcl15|20309|chemokine (C-X-C motif) ligand 15
mm9_v1_chr1_-_179178874_179178897	0.410198	GUCAGUU	AF124142|Akt3|23797|thymoma viral proto-oncogene 3	BC066861|Akt3|23797|thymoma viral proto-oncogene 3	NM_011785|Akt3|23797|thymoma viral proto-oncogene 3
mm9_v1_chr6_-_137118238_137118241	0.399747	GUCAGUU	NM_001164212|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor	NM_001164214|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor
mm9_v1_chr6_+_119429620_119429803	0.398878	GUCAGUU	NM_133940|Fbxl14|101358|F-box and leucine-rich repeat protein 14	AK036124|Fbxl14|101358|F-box and leucine-rich repeat protein 14	AK084506|Fbxl14|101358|F-box and leucine-rich repeat protein 14	AK155154|Fbxl14|101358|F-box and leucine-rich repeat protein 14	BC021329|Fbxl14|101358|F-box and leucine-rich repeat protein 14
mm9_v1_chr6_-_92133945_92134035	0.398689	GUCAGUU	AK131114|Mrps25|64658|mitochondrial ribosomal protein S25	AK013196|Mrps25|64658|mitochondrial ribosomal protein S25	AK004037|Mrps25|64658|mitochondrial ribosomal protein S25	BC022953|Mrps25|64658|mitochondrial ribosomal protein S25	NM_025578|Mrps25|64658|mitochondrial ribosomal protein S25
mm9_v1_chr8_+_36650839_36650928	0.388014	GUCAGUU	BC082308|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1	NM_001081279|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1
mm9_v1_chrX_-_50723622_50723678	0.387503	GUCAGUU	BC100442|Mospd1|70380|motile sperm domain containing 1	BC018329|Mospd1|70380|motile sperm domain containing 1	BC085100|Mospd1|70380|motile sperm domain containing 1	AK007533|Mospd1|70380|motile sperm domain containing 1	NM_027409|Mospd1|70380|motile sperm domain containing 1	AK088275|Mospd1|70380|motile sperm domain containing 1	AK139795|Mospd1|70380|motile sperm domain containing 1
mm9_v1_chr9_+_120448935_120448954	0.387347	GUCAGUU	NM_178676|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	AK032057|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3
mm9_v1_chr18_+_42671130_42671146	0.382934	GUCAGUU	NM_001039474|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr14_+_31528800_31528932	0.379672	GUCAGUU	AK154826|Sfmbt1|54650|Scm-like with four mbt domains 1	NM_001166532|Sfmbt1|54650|Scm-like with four mbt domains 1	BC036972|Sfmbt1|54650|Scm-like with four mbt domains 1	AK142330|Sfmbt1|54650|Scm-like with four mbt domains 1	BC018217|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr11_+_77306825_77306918	0.374723	GUCAGUU	BC079870|Git1|216963|G protein-coupled receptor kinase-interactor 1	NM_001004144|Git1|216963|G protein-coupled receptor kinase-interactor 1
mm9_v1_chr11_+_54911540_54911679	0.374067	GUCAGUU	AK149642|Gm2a|14667|GM2 ganglioside activator protein	AK152256|Gm2a|14667|GM2 ganglioside activator protein	U09816|Gm2a|14667|GM2 ganglioside activator protein	BC004651|Gm2a|14667|GM2 ganglioside activator protein	NM_010299|Gm2a|14667|GM2 ganglioside activator protein	L19526|Gm2a|14667|GM2 ganglioside activator protein	CT010289|Gm2a|14667|GM2 ganglioside activator protein	AK179394|Gm2a|14667|GM2 ganglioside activator protein	AK181597|Gm2a|14667|GM2 ganglioside activator protein
mm9_v1_chr7_+_71432538_71432641	0.368561	GUCAGUU	AK088715|Mtmr10|233315|myotubularin related protein 10	NM_172742|Mtmr10|233315|myotubularin related protein 10	BC041672|Mtmr10|233315|myotubularin related protein 10
mm9_v1_chr11_-_98010872_98010958	0.367725	GUCAGUU	AK220232|Fbxl20|72194|F-box and leucine-rich repeat protein 20	AK161566|Fbxl20|72194|F-box and leucine-rich repeat protein 20	AK144786|Fbxl20|72194|F-box and leucine-rich repeat protein 20	NM_028149|Fbxl20|72194|F-box and leucine-rich repeat protein 20	AK012109|Fbxl20|72194|F-box and leucine-rich repeat protein 20
mm9_v1_chr11_+_59475986_59476013	0.365682	GUCAGUU	AK154807|Mprip|26936|myosin phosphatase Rho interacting protein	NM_012027|Mprip|26936|myosin phosphatase Rho interacting protein	NM_201245|Mprip|26936|myosin phosphatase Rho interacting protein	AK158296|Mprip|26936|myosin phosphatase Rho interacting protein	AK171089|Mprip|26936|myosin phosphatase Rho interacting protein	AK170849|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr11_+_103994160_103994195	0.358239	GUCAGUU	AK158806|Crhr1|12921|corticotropin releasing hormone receptor 1	NM_007762|Crhr1|12921|corticotropin releasing hormone receptor 1
mm9_v1_chr1_+_196765014_196765069	0.352768	GUCAGUU	NM_001111059|Cd34|12490|CD34 antigen	NM_133654|Cd34|12490|CD34 antigen
mm9_v1_chr18_+_34380575_34380671	0.326558	GUCAGUU	AK042021|Apc|11789|adenomatosis polyposis coli	AK080907|Apc|11789|adenomatosis polyposis coli	NM_007462|Apc|11789|adenomatosis polyposis coli	AK046280|Apc|11789|adenomatosis polyposis coli	AK045053|Apc|11789|adenomatosis polyposis coli
mm9_v1_chr1_-_63160764_63160840	0.323259	GUCAGUU	AK049468|Ino80d|227195|INO80 complex subunit D	NM_001081436|Ino80d|227195|INO80 complex subunit D	NM_001114609|Ino80d|227195|INO80 complex subunit D
mm9_v1_chr3_+_157699644_157699694	0.319035	GUCAGUU	AK152244|Lrrc40|67144|leucine rich repeat containing 40	AK011726|Lrrc40|67144|leucine rich repeat containing 40	AK170052|Lrrc40|67144|leucine rich repeat containing 40	AK034978|Lrrc40|67144|leucine rich repeat containing 40	NM_024194|Lrrc40|67144|leucine rich repeat containing 40	AK017814|Lrrc40|67144|leucine rich repeat containing 40	AK163288|Lrrc40|67144|leucine rich repeat containing 40	AK148748|Lrrc40|67144|leucine rich repeat containing 40
mm9_v1_chr7_-_128850659_128850766	0.308936	GUCAGUU	NM_001033173|Usp31|76179|ubiquitin specific peptidase 31
mm9_v1_chr7_-_134004976_134004976	0.307318	GUCAGUU	BC026475|Ino80e|233875|INO80 complex subunit E	NM_153580|Ino80e|233875|INO80 complex subunit E
mm9_v1_chr11_-_118151298_118151557	0.302848	GUCAGUU	AK129363|Usp36|72344|ubiquitin specific peptidase 36	AK079342|Usp36|72344|ubiquitin specific peptidase 36	AK165635|Usp36|72344|ubiquitin specific peptidase 36	AK049205|Usp36|72344|ubiquitin specific peptidase 36	AK028572|Usp36|72344|ubiquitin specific peptidase 36	NM_001033528|Usp36|72344|ubiquitin specific peptidase 36
mm9_v1_chr2_-_170322575_170322644	0.294833	GUCAGUU	D49438|Cyp24a1|13081|cytochrome P450, family 24, subfamily a, polypeptide 1	BC109139|Cyp24a1|13081|cytochrome P450, family 24, subfamily a, polypeptide 1	BC109140|Cyp24a1|13081|cytochrome P450, family 24, subfamily a, polypeptide 1	D89669|Cyp24a1|13081|cytochrome P450, family 24, subfamily a, polypeptide 1	NM_009996|Cyp24a1|13081|cytochrome P450, family 24, subfamily a, polypeptide 1	AK143984|Cyp24a1|13081|cytochrome P450, family 24, subfamily a, polypeptide 1	AK159109|Cyp24a1|13081|cytochrome P450, family 24, subfamily a, polypeptide 1	AK159481|Cyp24a1|13081|cytochrome P450, family 24, subfamily a, polypeptide 1	AK159527|Cyp24a1|13081|cytochrome P450, family 24, subfamily a, polypeptide 1	AK159852|Cyp24a1|13081|cytochrome P450, family 24, subfamily a, polypeptide 1	AK159954|Cyp24a1|13081|cytochrome P450, family 24, subfamily a, polypeptide 1	AK159976|Cyp24a1|13081|cytochrome P450, family 24, subfamily a, polypeptide 1	AK164697|Cyp24a1|13081|cytochrome P450, family 24, subfamily a, polypeptide 1
mm9_v1_chr1_+_173080843_173080843	0.289855	GUCAGUU	AK089180|Mpz|17528|myelin protein zero	NM_008623|Mpz|17528|myelin protein zero
mm9_v1_chr17_-_10512217_10512250	0.282567	GUCAGUU	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr9_-_123771243_123771245	0.277443	GUCAGUU	AK089908|Xcr1|23832|chemokine (C motif) receptor 1	AK040878|Xcr1|23832|chemokine (C motif) receptor 1	NM_011798|Xcr1|23832|chemokine (C motif) receptor 1
mm9_v1_chr6_-_3714466_3714712	0.276614	GUCAGUU	AK162391|Calcr|12311|calcitonin receptor	U18542|Calcr|12311|calcitonin receptor	AK039161|Calcr|12311|calcitonin receptor	AK138275|Calcr|12311|calcitonin receptor	NM_007588|Calcr|12311|calcitonin receptor
mm9_v1_chr15_-_57723937_57723989	0.27518	GUCAGUU	AK152901|Derl1|67819|Der1-like domain family, member 1	AK148018|Derl1|67819|Der1-like domain family, member 1	AK152197|Derl1|67819|Der1-like domain family, member 1	AK043420|Derl1|67819|Der1-like domain family, member 1	NM_024207|Derl1|67819|Der1-like domain family, member 1	AK007435|Derl1|67819|Der1-like domain family, member 1
mm9_v1_chr16_-_18235102_18235235	0.260307	GUCAGUU	AY668947|Zdhhc8|27801|zinc finger, DHHC domain containing 8	AY894892|Zdhhc8|27801|zinc finger, DHHC domain containing 8	NM_172151|Zdhhc8|27801|zinc finger, DHHC domain containing 8
mm9_v1_chr5_-_144493077_144493148	0.258608	GUCAGUU	NM_029749|Usp42|76800|ubiquitin specific peptidase 42
mm9_v1_chr9_-_53475610_53475616	0.257624	GUCAGUU	AK031955|Cul5|75717|cullin 5	NM_001161618|Cul5|75717|cullin 5	NM_027807|Cul5|75717|cullin 5
mm9_v1_chr8_-_89269853_89269958	0.255962	GUCAGUU	BC046317|Siah1a|20437|seven in absentia 1A	NM_009172|Siah1a|20437|seven in absentia 1A
mm9_v1_chr13_+_35833181_35833351	0.255064	GUCAGUU	BC062123|Cdyl|12593|chromodomain protein, Y chromosome-like	AK156509|Cdyl|12593|chromodomain protein, Y chromosome-like	NM_001123386|Cdyl|12593|chromodomain protein, Y chromosome-like
mm9_v1_chr10_-_75931858_75931858	0.247411	GUCAGUU	BC057308|Ybey|216119|ybeY metallopeptidase	NM_172550|Ybey|216119|ybeY metallopeptidase
mm9_v1_chr5_+_111847185_111847185	0.242282	GUCAGUU	NM_001081235|Mn1|433938|meningioma 1
mm9_v1_chr5_+_120284671_120284671	0.241133	GUCAGUU	BC090639|Tbx5|21388|T-box 5	NM_011537|Tbx5|21388|T-box 5
mm9_v1_chr2_+_23012016_23012208	0.233597	GUCAGUU	AK032273|Yme1l1|27377|YME1-like 1 (S. cerevisiae)	AK045141|Yme1l1|27377|YME1-like 1 (S. cerevisiae)	AF090430|Yme1l1|27377|YME1-like 1 (S. cerevisiae)	AY136287|Yme1l1|27377|YME1-like 1 (S. cerevisiae)	BC007128|Yme1l1|27377|YME1-like 1 (S. cerevisiae)	AK079175|Yme1l1|27377|YME1-like 1 (S. cerevisiae)	NM_013771|Yme1l1|27377|YME1-like 1 (S. cerevisiae)	AK137665|Yme1l1|27377|YME1-like 1 (S. cerevisiae)	AY136286|Yme1l1|27377|YME1-like 1 (S. cerevisiae)
mm9_v1_chr12_+_25659777_25659836	0.232915	GUCAGUU	AK021172|Kidins220|77480|kinase D-interacting substrate 220	NM_001081378|Kidins220|77480|kinase D-interacting substrate 220	BC157898|Kidins220|77480|kinase D-interacting substrate 220
mm9_v1_chr19_-_5912757_5912865	0.231695	GUCAGUU	U10435|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK215194|Dpf2|19708|D4, zinc and double PHD fingers family 2	BC012709|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK138047|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144848|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK019051|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144106|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK004812|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144954|Dpf2|19708|D4, zinc and double PHD fingers family 2	U43921|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK145851|Dpf2|19708|D4, zinc and double PHD fingers family 2	NM_011262|Dpf2|19708|D4, zinc and double PHD fingers family 2
mm9_v1_chr11_-_53113895_53113995	0.230765	GUCAGUU	AK155305|Hspa4|15525|heat shock protein 4	AK053601|Hspa4|15525|heat shock protein 4	AK054010|Hspa4|15525|heat shock protein 4	AK133772|Hspa4|15525|heat shock protein 4	AK220167|Hspa4|15525|heat shock protein 4	AK143543|Hspa4|15525|heat shock protein 4	AK171940|Hspa4|15525|heat shock protein 4	AK166102|Hspa4|15525|heat shock protein 4	NM_008300|Hspa4|15525|heat shock protein 4
mm9_v1_chr13_-_17896909_17896930	0.225913	GUCAGUU	AK173265|Cdk13|69562|cyclin-dependent kinase 13	NM_001081058|Cdk13|69562|cyclin-dependent kinase 13	NM_027118|Cdk13|69562|cyclin-dependent kinase 13
mm9_v1_chr11_-_90499370_90499421	0.225047	GUCAGUU	BC032881|Stxbp4|20913|syntaxin binding protein 4	AK012293|Stxbp4|20913|syntaxin binding protein 4	AK032998|Stxbp4|20913|syntaxin binding protein 4	AK049001|Stxbp4|20913|syntaxin binding protein 4	NM_011505|Stxbp4|20913|syntaxin binding protein 4
mm9_v1_chr14_+_31528034_31528081	0.223878	GUCAGUU	NM_019460|Sfmbt1|54650|Scm-like with four mbt domains 1	BC066188|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr6_-_71390592_71390638	0.215777	GUCAGUU	AK164384|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)	NM_024288|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
mm9_v1_chr8_+_131209533_131209569	0.214506	GUCAGUU	NM_010578|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chr9_-_85220730_85220905	0.2091	GUCAGUU	NM_001160378|Fam46a|212943|family with sequence similarity 46, member A	AK135132|Fam46a|212943|family with sequence similarity 46, member A	NM_001160379|Fam46a|212943|family with sequence similarity 46, member A
mm9_v1_chr9_+_71063591_71063595	0.200781	GUCAGUU	NM_009022|Aldh1a2|19378|aldehyde dehydrogenase family 1, subfamily A2
mm9_v1_chr7_-_30017388_30017620	0.195393	GUCAGUU	AK163847|Kcnk6|52150|potassium inwardly-rectifying channel, subfamily K, member 6	AK036882|Kcnk6|52150|potassium inwardly-rectifying channel, subfamily K, member 6	DQ185135|Kcnk6|52150|potassium inwardly-rectifying channel, subfamily K, member 6	AK171038|Kcnk6|52150|potassium inwardly-rectifying channel, subfamily K, member 6	AK132480|Kcnk6|52150|potassium inwardly-rectifying channel, subfamily K, member 6	NM_001033525|Kcnk6|52150|potassium inwardly-rectifying channel, subfamily K, member 6
mm9_v1_chr9_+_113650560_113650629	0.194869	GUCAGUU	AJ276961|Clasp2|76499|CLIP associating protein 2	NM_001114347|Clasp2|76499|CLIP associating protein 2	AK034560|Clasp2|76499|CLIP associating protein 2
mm9_v1_chr3_+_109143558_109143678	0.188948	GUCAGUU	AK033253|Vav3|57257|vav 3 oncogene	NM_020505|Vav3|57257|vav 3 oncogene	AK041249|Vav3|57257|vav 3 oncogene
mm9_v1_chr5_+_32761332_32761346	0.183195	GUCAGUU	NM_172707|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK166416|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr7_+_97591287_97591327	0.177779	GUCAGUU	NM_145151|Crebzf|233490|CREB/ATF bZIP transcription factor
mm9_v1_chr6_+_34426352_34426399	0.175144	GUCAGUU	AK037239|Bpgm|12183|2,3-bisphosphoglycerate mutase	AK078119|Bpgm|12183|2,3-bisphosphoglycerate mutase	NM_007563|Bpgm|12183|2,3-bisphosphoglycerate mutase	AK171685|Bpgm|12183|2,3-bisphosphoglycerate mutase	AK211952|Bpgm|12183|2,3-bisphosphoglycerate mutase
mm9_v1_chr15_-_103070227_103070257	0.167022	GUCAGUU	BC004707|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001076789|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr1_-_99666564_99666675	0.16614	GUCAGUU	AK087712|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK149804|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK129140|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK166095|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	NM_173760|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2
mm9_v1_chr1_-_137327006_137327084	0.159154	GUCAGUU	AJ309238|Ipo9|226432|importin 9	AF273672|Ipo9|226432|importin 9	AF273673|Ipo9|226432|importin 9	AK036687|Ipo9|226432|importin 9	BC098508|Ipo9|226432|importin 9	BC056469|Ipo9|226432|importin 9	BC079546|Ipo9|226432|importin 9	NM_153774|Ipo9|226432|importin 9
mm9_v1_chr2_-_172284055_172284095	0.15287	GUCAGUU	BC139073|Gcnt7|654821|glucosaminyl (N-acetyl) transferase family member 7	BC139076|Gcnt7|654821|glucosaminyl (N-acetyl) transferase family member 7	AK039414|Gcnt7|654821|glucosaminyl (N-acetyl) transferase family member 7	NM_001039560|Gcnt7|654821|glucosaminyl (N-acetyl) transferase family member 7
mm9_v1_chr7_-_112900699_112900744	0.146879	GUCAGUU	AJ011912|Tpp1|12751|tripeptidyl peptidase I	BC024820|Tpp1|12751|tripeptidyl peptidase I	AK170781|Tpp1|12751|tripeptidyl peptidase I	AK146759|Tpp1|12751|tripeptidyl peptidase I	AK048279|Tpp1|12751|tripeptidyl peptidase I	NM_009906|Tpp1|12751|tripeptidyl peptidase I	AK083832|Tpp1|12751|tripeptidyl peptidase I	AK169924|Tpp1|12751|tripeptidyl peptidase I	AF111172|Tpp1|12751|tripeptidyl peptidase I	AK155021|Tpp1|12751|tripeptidyl peptidase I	AK002418|Tpp1|12751|tripeptidyl peptidase I	AK165669|Tpp1|12751|tripeptidyl peptidase I
mm9_v1_chr6_-_3713622_3713622	0.143474	GUCAGUU	AK133983|Calcr|12311|calcitonin receptor	NM_001042725|Calcr|12311|calcitonin receptor
mm9_v1_chr2_-_63936044_63936094	0.138491	GUCAGUU	AF263913|Fign|60344|fidgetin	AK163474|Fign|60344|fidgetin	AK164536|Fign|60344|fidgetin	NM_021716|Fign|60344|fidgetin	AK143787|Fign|60344|fidgetin	BC059266|Fign|60344|fidgetin
mm9_v1_chr15_+_84062273_84062503	0.136302	GUCAGUU	BC158113|Parvb|170736|parvin, beta	BC138747|Parvb|170736|parvin, beta	BC138748|Parvb|170736|parvin, beta	NM_133167|Parvb|170736|parvin, beta	AK143614|Parvb|170736|parvin, beta	AF237770|Parvb|170736|parvin, beta	AK147758|Parvb|170736|parvin, beta
mm9_v1_chr7_-_96487247_96487305	0.135859	GUCAGUU	AK013269|Tmem135|72759|transmembrane protein 135	AK028846|Tmem135|72759|transmembrane protein 135	AK047200|Tmem135|72759|transmembrane protein 135	BC033279|Tmem135|72759|transmembrane protein 135	NM_028343|Tmem135|72759|transmembrane protein 135
mm9_v1_chr2_+_32426348_32426407	0.125292	GUCAGUU	BC008256|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2	NM_010073|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2	AK002468|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2	AK086634|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2	AK004241|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2	AB013360|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2
mm9_v1_chr19_-_24299471_24299519	0.12215	GUCAGUU	NM_011597|Tjp2|21873|tight junction protein 2
mm9_v1_chr14_+_31528352_31528352	0.114354	GUCAGUU	AK160573|Sfmbt1|54650|Scm-like with four mbt domains 1	NM_001166531|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chrX_+_117040804_117040804	0.111719	GUCAGUU	AK050551|Pabpc5|93728|poly(A) binding protein, cytoplasmic 5	NM_053114|Pabpc5|93728|poly(A) binding protein, cytoplasmic 5
mm9_v1_chrX_+_97925185_97925339	0.10892	GUCAGUU	NM_023608|Gdpd2|71584|glycerophosphodiester phosphodiesterase domain containing 2	AK031379|Gdpd2|71584|glycerophosphodiester phosphodiesterase domain containing 2	BC038274|Gdpd2|71584|glycerophosphodiester phosphodiesterase domain containing 2	AB048364|Gdpd2|71584|glycerophosphodiester phosphodiesterase domain containing 2
mm9_v1_chr9_-_111592643_111592751	0.108299	GUCAGUU	BC107325|Stac|20840|src homology three (SH3) and cysteine rich domain	BC107326|Stac|20840|src homology three (SH3) and cysteine rich domain	D86639|Stac|20840|src homology three (SH3) and cysteine rich domain	NM_016853|Stac|20840|src homology three (SH3) and cysteine rich domain	AK134777|Stac|20840|src homology three (SH3) and cysteine rich domain	AK143440|Stac|20840|src homology three (SH3) and cysteine rich domain
mm9_v1_chr6_+_147039596_147039596	0.093905	GUCAGUU	NM_001081237|Klhdc5|232539|kelch domain containing 5
mm9_v1_chr14_+_26278670_26278824	0.0778672	GUCAGUU	AK138053|Zmiz1|328365|zinc finger, MIZ-type containing 1	BC058646|Zmiz1|328365|zinc finger, MIZ-type containing 1	AK054366|Zmiz1|328365|zinc finger, MIZ-type containing 1	BC065120|Zmiz1|328365|zinc finger, MIZ-type containing 1	NM_183208|Zmiz1|328365|zinc finger, MIZ-type containing 1	AK169397|Zmiz1|328365|zinc finger, MIZ-type containing 1
mm9_v1_chr3_-_144761960_144762069	0.0666501	GUCAGUU	AY161007|Clca5|229933|chloride channel calcium activated 5	AK048276|Clca5|229933|chloride channel calcium activated 5	AK028704|Clca5|229933|chloride channel calcium activated 5	NM_178697|Clca5|229933|chloride channel calcium activated 5	BC096379|Clca5|229933|chloride channel calcium activated 5	AK035512|Clca5|229933|chloride channel calcium activated 5
mm9_v1_chr2_-_118082593_118082701	0.0574635	GUCAGUU	BC125024|Fsip1|71313|fibrous sheath-interacting protein 1	AK017026|Fsip1|71313|fibrous sheath-interacting protein 1	AK005924|Fsip1|71313|fibrous sheath-interacting protein 1	AF448787|Fsip1|71313|fibrous sheath-interacting protein 1	NM_027759|Fsip1|71313|fibrous sheath-interacting protein 1
mm9_v1_chr5_+_138526303_138526341	0.0519309	GUCAGUU	NM_029869|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	NM_133906|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK036807|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK031759|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020355|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK154831|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020039|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK054323|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1
mm9_v1_chr13_-_38128805_38129027	0.0497713	GUCAGUU	AK016953|Cage1|71213|cancer antigen 1	NM_027724|Cage1|71213|cancer antigen 1	BC082568|Cage1|71213|cancer antigen 1	AK089301|Cage1|71213|cancer antigen 1
mm9_v1_chr6_-_137119016_137119017	0.044335	GUCAGUU	NM_181988|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor	BC026463|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor
mm9_v1_chr13_-_97907844_97907886	0.0314097	GUCAGUU	AK019379|Nsa2|59050|NSA2 ribosome biogenesis homolog (S. cerevisiae)	AK014275|Nsa2|59050|NSA2 ribosome biogenesis homolog (S. cerevisiae)	NM_021552|Nsa2|59050|NSA2 ribosome biogenesis homolog (S. cerevisiae)
mm9_v1_chr18_+_85020800_85020860	0.0292235	GUCAGUU	BC024341|Cyb5|109672|cytochrome b-5	AK002426|Cyb5|109672|cytochrome b-5	AK013210|Cyb5|109672|cytochrome b-5	NM_025797|Cyb5|109672|cytochrome b-5
mm9_v1_chr2_+_37298785_37298902	0.0243789	GUCAGUU	NM_146121|Rabgap1|227800|RAB GTPase activating protein 1	AK031315|Rabgap1|227800|RAB GTPase activating protein 1	AK021286|Rabgap1|227800|RAB GTPase activating protein 1	BC138337|Rabgap1|227800|RAB GTPase activating protein 1
mm9_v1_chr7_+_53039273_53039322	0.0233721	GUCAGUU	BC094377|Lmtk3|381983|lemur tyrosine kinase 3	NM_001005511|Lmtk3|381983|lemur tyrosine kinase 3	AB288873|Lmtk3|381983|lemur tyrosine kinase 3
mm9_v1_chr10_-_70700764_70701027	0.0112342	GUCAGUU	U57939|Tfam|21780|transcription factor A, mitochondrial	AK004857|Tfam|21780|transcription factor A, mitochondrial	BC001987|Tfam|21780|transcription factor A, mitochondrial	BC083084|Tfam|21780|transcription factor A, mitochondrial	AK050446|Tfam|21780|transcription factor A, mitochondrial	AK167348|Tfam|21780|transcription factor A, mitochondrial	NM_009360|Tfam|21780|transcription factor A, mitochondrial	AK163563|Tfam|21780|transcription factor A, mitochondrial	AK017974|Tfam|21780|transcription factor A, mitochondrial	AK161747|Tfam|21780|transcription factor A, mitochondrial	AK167777|Tfam|21780|transcription factor A, mitochondrial	AK169808|Tfam|21780|transcription factor A, mitochondrial	U63859|Tfam|21780|transcription factor A, mitochondrial	U63858|Tfam|21780|transcription factor A, mitochondrial	U63712|Tfam|21780|transcription factor A, mitochondrial
mm9_v1_chr1_-_123229156_123229165	0.0108917	GUCAGUU	AK040703|Insig2|72999|insulin induced gene 2	NM_178082|Insig2|72999|insulin induced gene 2	AY156084|Insig2|72999|insulin induced gene 2
mm9_v1_chr11_-_60727237_60727316	0.00954295	GUCAGUU	BC034332|Gm16515|24083|predicted gene, Gm16515	BC038816|Gm16515|24083|predicted gene, Gm16515	AK004720|Gm16515|24083|predicted gene, Gm16515	AK089179|Gm16515|24083|predicted gene, Gm16515	AK080453|Gm16515|24083|predicted gene, Gm16515	NM_025294|Gm16515|24083|predicted gene, Gm16515
mm9_v1_chr9_-_67680136_67680136	0.00679449	GUCAGUU	NM_001163143|C2cd4a|244911|C2 calcium-dependent domain containing 4A
mm9_v1_chrX_+_140127827_140127856	0.00499864	GUCAGUU	AF082297|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195046|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195047|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AJ496262|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AJ496263|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AM943853|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AM943854|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr7_+_16657269_16657290	0.00381448	GUCAGUU	BC157962|Zfp541|666528|zinc finger protein 541	DQ864732|Zfp541|666528|zinc finger protein 541	NM_001099277|Zfp541|666528|zinc finger protein 541
mm9_v1_chr3_-_137849636_137849676	0.00207239	GUCAGUU	BC150693|4930579F01Rik|67741|RIKEN cDNA 4930579F01 gene	AK016318|4930579F01Rik|67741|RIKEN cDNA 4930579F01 gene	NM_001163385|4930579F01Rik|67741|RIKEN cDNA 4930579F01 gene	NM_001163386|4930579F01Rik|67741|RIKEN cDNA 4930579F01 gene
