mm9_v1_chr17_-_48571942_48571962	54.7784	LHX3,4.p2	AK009047|Apobec2|11811|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2	BC027530|Apobec2|11811|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm9_v1_chr17_-_48572043_48572062	49.1131	LHX3,4.p2	AF161699|Apobec2|11811|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2	NM_009694|Apobec2|11811|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm9_v1_chr6_+_124254668_124254724	16.0949	LHX3,4.p2	NM_001170395|Cd163|93671|CD163 antigen	NM_053094|Cd163|93671|CD163 antigen	AF274883|Cd163|93671|CD163 antigen	BC144848|Cd163|93671|CD163 antigen	BC145793|Cd163|93671|CD163 antigen	DQ058616|Cd163|93671|CD163 antigen	DQ058617|Cd163|93671|CD163 antigen
mm9_v1_chr6_+_4483741_4483796	12.9986	LHX3,4.p2	BC012438|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr11_+_67051128_67051361	11.0211	LHX3,4.p2	DQ066415|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066416|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066417|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	AK138608|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	AY963801|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066418|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle
mm9_v1_chr11_+_67611772_67611789	10.1299	LHX3,4.p2	NM_001013013|Dhrs7c|68460|dehydrogenase/reductase (SDR family) member 7C	AK003267|Dhrs7c|68460|dehydrogenase/reductase (SDR family) member 7C	BC039565|Dhrs7c|68460|dehydrogenase/reductase (SDR family) member 7C
mm9_v1_chr3_+_101949321_101949348	9.33378	LHX3,4.p2	AK132122|Casq2|12373|calsequestrin 2
mm9_v1_chr7_-_52359079_52359191	9.15523	LHX3,4.p2	BC003786|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	D37874|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	AK152879|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	AK146933|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	AK008167|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	AK008360|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	NM_010189|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter
mm9_v1_chr5_-_17394564_17394590	9.04242	LHX3,4.p2	AK128908|Cd36|12491|CD36 antigen
mm9_v1_chr10_-_61960613_61960625	8.63768	LHX3,4.p2	AK087960|Srgn|19073|serglycin
mm9_v1_chr17_-_74242984_74243003	8.50387	LHX3,4.p2	BC003997|Xdh|22436|xanthine dehydrogenase
mm9_v1_chr6_-_3349415_3349463	8.3725	LHX3,4.p2	AK172649|Samd9l|209086|sterile alpha motif domain containing 9-like
mm9_v1_chr5_-_17394776_17394776	8.02493	LHX3,4.p2	NM_001159558|Cd36|12491|CD36 antigen
mm9_v1_chr17_-_34999068_34999191	7.90097	LHX3,4.p2	AK149531|Cfb|14962|complement factor B	BC005451|Cfb|14962|complement factor B	AK098094|Cfb|14962|complement factor B	AK149573|Cfb|14962|complement factor B	M57890|Cfb|14962|complement factor B	AK151246|Cfb|14962|complement factor B
mm9_v1_chr6_+_145882641_145882808	7.89537	LHX3,4.p2	AK162864|Sspn|16651|sarcospan	AK163041|Sspn|16651|sarcospan	AK164430|Sspn|16651|sarcospan	BC021484|Sspn|16651|sarcospan	NM_010656|Sspn|16651|sarcospan	U02487|Sspn|16651|sarcospan	AK148179|Sspn|16651|sarcospan	AK164529|Sspn|16651|sarcospan
mm9_v1_chr1_+_19093102_19093153	7.83601	LHX3,4.p2	AK132112|Tcfap2d|226896|transcription factor AP-2, delta	NM_153154|Tcfap2d|226896|transcription factor AP-2, delta	BC152324|Tcfap2d|226896|transcription factor AP-2, delta	BC152325|Tcfap2d|226896|transcription factor AP-2, delta
mm9_v1_chr2_+_69508174_69508176	7.78607	LHX3,4.p2	AK132646|Kbtbd10|228003|kelch repeat and BTB (POZ) domain containing 10	NM_001081087|Kbtbd10|228003|kelch repeat and BTB (POZ) domain containing 10
mm9_v1_chr17_-_34999458_34999467	7.7613	LHX3,4.p2	NM_001142706|Cfb|14962|complement factor B	NM_008198|Cfb|14962|complement factor B
mm9_v1_chr16_-_11220854_11220973	7.57837	LHX3,4.p2	AK218484|Gspt1|14852|G1 to S phase transition 1
mm9_v1_chr10_+_96945057_96945132	7.53578	LHX3,4.p2	BC132521|Dcn|13179|decorin	BC138564|Dcn|13179|decorin
mm9_v1_chr11_+_67051530_67051557	7.25539	LHX3,4.p2	NM_010855|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066419|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ233297|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle
mm9_v1_chr10_-_61970481_61970509	7.21236	LHX3,4.p2	BC037076|Srgn|19073|serglycin	J04549|Srgn|19073|serglycin	AK157945|Srgn|19073|serglycin	M34603|Srgn|19073|serglycin	NM_011157|Srgn|19073|serglycin	X16133|Srgn|19073|serglycin	AK168124|Srgn|19073|serglycin	AK151357|Srgn|19073|serglycin
mm9_v1_chr17_+_34442808_34442831	6.96766	LHX3,4.p2	NM_010382|H2-Eb1|14969|histocompatibility 2, class II antigen E beta
mm9_v1_chrX_+_130385546_130385673	6.87993	LHX3,4.p2	BC049944|Tnmd|64103|tenomodulin	NM_022322|Tnmd|64103|tenomodulin	AF191768|Tnmd|64103|tenomodulin	AK003748|Tnmd|64103|tenomodulin	AF219993|Tnmd|64103|tenomodulin
mm9_v1_chrX_+_130385690_130385739	6.75733	LHX3,4.p2	AK014761|Tnmd|64103|tenomodulin	BC006919|Tnmd|64103|tenomodulin	AB055422|Tnmd|64103|tenomodulin
mm9_v1_chr8_-_64381465_64381486	6.58528	LHX3,4.p2	AK052489|Palld|72333|palladin, cytoskeletal associated protein	NM_001081390|Palld|72333|palladin, cytoskeletal associated protein
mm9_v1_chr15_+_3230053_3230123	6.55382	LHX3,4.p2	
mm9_v1_chr10_-_62666659_62666699	6.41521	LHX3,4.p2	AK036458|Mypn|68802|myopalladin	AK220521|Mypn|68802|myopalladin	NM_182992|Mypn|68802|myopalladin
mm9_v1_chr9_-_44610921_44611015	6.1369	LHX3,4.p2	BC021608|Ttc36|192653|tetratricopeptide repeat domain 36	AK165811|Ttc36|192653|tetratricopeptide repeat domain 36	BC026825|Ttc36|192653|tetratricopeptide repeat domain 36
mm9_v1_chr18_+_57628139_57628180	6.03407	LHX3,4.p2	NM_001134697|Ctxn3|629147|cortexin 3	AK042789|Ctxn3|629147|cortexin 3
mm9_v1_chr17_+_34442837_34442976	5.80849	LHX3,4.p2	AK155968|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	X52642|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	BC132165|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	BC132163|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	AK160485|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	X52641|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	X07239|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	M36940|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	D90032|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	U28489|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	U28490|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	M36939|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	D90275|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	X00958|H2-Eb1|14969|histocompatibility 2, class II antigen E beta	M28408|H2-Eb1|14969|histocompatibility 2, class II antigen E beta
mm9_v1_chr12_-_74147698_74147707	5.73851	LHX3,4.p2	AK131925|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	NM_009189|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	AK144753|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr6_+_4484651_4484672	5.72818	LHX3,4.p2	AK159120|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr8_+_55635683_55635717	5.63363	LHX3,4.p2	AK003770|Asb5|76294|ankyrin repeat and SOCs box-containing 5	NM_029569|Asb5|76294|ankyrin repeat and SOCs box-containing 5	BC120851|Asb5|76294|ankyrin repeat and SOCs box-containing 5	BC132007|Asb5|76294|ankyrin repeat and SOCs box-containing 5
mm9_v1_chr1_-_164796660_164796743	5.59454	LHX3,4.p2	BC011229|Fmo1|14261|flavin containing monooxygenase 1	NM_010231|Fmo1|14261|flavin containing monooxygenase 1
mm9_v1_chr2_-_28771940_28771959	5.58591	LHX3,4.p2	NM_019446|Barhl1|54422|BarH-like 1 (Drosophila)	AB043980|Barhl1|54422|BarH-like 1 (Drosophila)	BC055731|Barhl1|54422|BarH-like 1 (Drosophila)	NM_001164186|Barhl1|54422|BarH-like 1 (Drosophila)
mm9_v1_chr15_-_103395483_103395508	5.5365	LHX3,4.p2	M93428|Glycam1|14663|glycosylation dependent cell adhesion molecule 1	BC145548|Glycam1|14663|glycosylation dependent cell adhesion molecule 1	BC145832|Glycam1|14663|glycosylation dependent cell adhesion molecule 1	BC145858|Glycam1|14663|glycosylation dependent cell adhesion molecule 1	BC031931|Glycam1|14663|glycosylation dependent cell adhesion molecule 1	AK021358|Glycam1|14663|glycosylation dependent cell adhesion molecule 1	NM_008134|Glycam1|14663|glycosylation dependent cell adhesion molecule 1
mm9_v1_chr13_-_60278859_60278952	5.4664	LHX3,4.p2	NM_008086|Gas1|14451|growth arrest specific 1
mm9_v1_chr15_+_58731646_58731691	5.45121	LHX3,4.p2	AK016137|Rnf139|75841|ring finger protein 139
mm9_v1_chr10_+_96944961_96945010	5.43321	LHX3,4.p2	NM_007833|Dcn|13179|decorin	AK147020|Dcn|13179|decorin
mm9_v1_chr7_-_91763744_91763768	5.31171	LHX3,4.p2	AK164865|Zfand6|65098|zinc finger, AN1-type domain 6
mm9_v1_chr1_-_164796609_164796656	5.3111	LHX3,4.p2	U87456|Fmo1|14261|flavin containing monooxygenase 1
mm9_v1_chr4_-_61179982_61180020	5.29659	LHX3,4.p2	X04115|Mup1|17840|major urinary protein 1
mm9_v1_chr9_-_110649625_110649648	5.21354	LHX3,4.p2	BC013446|Pth1r|19228|parathyroid hormone 1 receptor	NM_011199|Pth1r|19228|parathyroid hormone 1 receptor
mm9_v1_chr4_-_60594496_60594530	5.21044	LHX3,4.p2	M27609|Mup1|17840|major urinary protein 1	X03524|Mup1|17840|major urinary protein 1
mm9_v1_chr12_-_74147683_74147691	5.19967	LHX3,4.p2	BC023304|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr8_+_55635768_55635781	5.08545	LHX3,4.p2	BC108405|Asb5|76294|ankyrin repeat and SOCs box-containing 5	AF398966|Asb5|76294|ankyrin repeat and SOCs box-containing 5
mm9_v1_chr13_+_49639847_49640001	5.08339	LHX3,4.p2	AK014504|Aspn|66695|asporin	AK021386|Aspn|66695|asporin	AK085920|Aspn|66695|asporin	BC034888|Aspn|66695|asporin	BC145904|Aspn|66695|asporin	BC145930|Aspn|66695|asporin
mm9_v1_chr4_-_60594469_60594490	5.0286	LHX3,4.p2	X04115|Mup1|17840|major urinary protein 1
mm9_v1_chr3_-_129035406_129035666	5.02293	LHX3,4.p2	DQ000292|Enpep|13809|glutamyl aminopeptidase	M29961|Enpep|13809|glutamyl aminopeptidase	BC127060|Enpep|13809|glutamyl aminopeptidase	BC064061|Enpep|13809|glutamyl aminopeptidase	AK128975|Enpep|13809|glutamyl aminopeptidase	AK034613|Enpep|13809|glutamyl aminopeptidase	AK146808|Enpep|13809|glutamyl aminopeptidase	NM_007934|Enpep|13809|glutamyl aminopeptidase
mm9_v1_chr7_-_80686630_80686631	4.90412	LHX3,4.p2	AK133596|Chd2|244059|chromodomain helicase DNA binding protein 2	AK040559|Chd2|244059|chromodomain helicase DNA binding protein 2	AK132638|Chd2|244059|chromodomain helicase DNA binding protein 2	AK136686|Chd2|244059|chromodomain helicase DNA binding protein 2	NM_001081345|Chd2|244059|chromodomain helicase DNA binding protein 2
mm9_v1_chr2_-_73418334_73418394	4.85605	LHX3,4.p2	AK132589|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	X03986|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	AK029177|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	NM_007389|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	BC125439|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	BC137678|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
mm9_v1_chr13_+_23931302_23931497	4.84921	LHX3,4.p2	NM_001164743|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3	NM_134069|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3	AK128896|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3	AK143896|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3	BC024459|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3	BC018252|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3	AK165505|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3	BC034179|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3	BC034183|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3
mm9_v1_chr3_+_137949734_137949755	4.84576	LHX3,4.p2	M22611|Adh1|11522|alcohol dehydrogenase 1 (class I)
mm9_v1_chr3_-_112959644_112959644	4.82368	LHX3,4.p2	NM_001190403|Amy2b|545562|amylase 2b	NM_001190404|Amy2b|545562|amylase 2b
mm9_v1_chr11_+_87895626_87895848	4.80596	LHX3,4.p2	AK079148|Vezf1|22344|vascular endothelial zinc finger 1	AK018086|Vezf1|22344|vascular endothelial zinc finger 1
mm9_v1_chr1_-_72330767_72330887	4.73772	LHX3,4.p2	AF232011|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	BC013530|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AF242204|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK090327|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK135714|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK162100|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK010260|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	NM_023523|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase
mm9_v1_chr9_-_44611033_44611045	4.73552	LHX3,4.p2	BC024432|Ttc36|192653|tetratricopeptide repeat domain 36	NM_138951|Ttc36|192653|tetratricopeptide repeat domain 36	BC021613|Ttc36|192653|tetratricopeptide repeat domain 36
mm9_v1_chrM_-_13886_13905	4.67364	LHX3,4.p2	
mm9_v1_chr11_+_76718046_76718079	4.66505	LHX3,4.p2	AK009118|Tmigd1|66601|transmembrane and immunoglobulin domain containing 1	NM_025655|Tmigd1|66601|transmembrane and immunoglobulin domain containing 1	BC061082|Tmigd1|66601|transmembrane and immunoglobulin domain containing 1	BC022683|Tmigd1|66601|transmembrane and immunoglobulin domain containing 1
mm9_v1_chr5_-_69933835_69933870	4.65337	LHX3,4.p2	AK009405|Yipf7|75581|Yip1 domain family, member 7	BC089576|Yipf7|75581|Yip1 domain family, member 7	NM_023784|Yipf7|75581|Yip1 domain family, member 7
mm9_v1_chr2_+_74536666_74536675	4.64783	LHX3,4.p2	AK144746|Hoxd9|15438|homeobox D9
mm9_v1_chr5_+_7960430_7960493	4.63642	LHX3,4.p2	AK040760|Steap4|117167|STEAP family member 4	AJ319746|Steap4|117167|STEAP family member 4	BC006651|Steap4|117167|STEAP family member 4	NM_054098|Steap4|117167|STEAP family member 4	AY029778|Steap4|117167|STEAP family member 4
mm9_v1_chr9_-_44611055_44611072	4.60106	LHX3,4.p2	AK149384|Ttc36|192653|tetratricopeptide repeat domain 36
mm9_v1_chr2_+_35413977_35414092	4.58595	LHX3,4.p2	NM_001114125|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	DQ473307|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr2_+_132673469_132673469	4.56039	LHX3,4.p2	AK016165|Crls1|66586|cardiolipin synthase 1	NM_025646|Crls1|66586|cardiolipin synthase 1
mm9_v1_chr6_-_87793459_87793650	4.55776	LHX3,4.p2	AK211658|Cnbp|12785|cellular nucleic acid binding protein	BC003805|Cnbp|12785|cellular nucleic acid binding protein
mm9_v1_chr1_+_89951985_89952026	4.51738	LHX3,4.p2	BC089569|Ugt1a10|394430|UDP glycosyltransferase 1 family, polypeptide A10	NM_201641|Ugt1a10|394430|UDP glycosyltransferase 1 family, polypeptide A10	AY227201|Ugt1a10|394430|UDP glycosyltransferase 1 family, polypeptide A10
mm9_v1_chr4_+_94405963_94405990	4.49554	LHX3,4.p2	BC050824|Tek|21687|endothelial-specific receptor tyrosine kinase	D13738|Tek|21687|endothelial-specific receptor tyrosine kinase	NM_013690|Tek|21687|endothelial-specific receptor tyrosine kinase
mm9_v1_chr6_-_3349470_3349570	4.48305	LHX3,4.p2	BC079894|Samd9l|209086|sterile alpha motif domain containing 9-like	AK052535|Samd9l|209086|sterile alpha motif domain containing 9-like	NM_010156|Samd9l|209086|sterile alpha motif domain containing 9-like
mm9_v1_chr7_-_56099011_56099046	4.36192	LHX3,4.p2	BC061131|Csrp3|13009|cysteine and glycine-rich protein 3	NM_013808|Csrp3|13009|cysteine and glycine-rich protein 3
mm9_v1_chr7_-_125629996_125630002	4.34377	LHX3,4.p2	AK164927|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2	AK081844|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm9_v1_chr3_+_116265890_116265995	4.20997	LHX3,4.p2	AK035072|Lrrc39|109245|leucine rich repeat containing 39	NM_027321|Lrrc39|109245|leucine rich repeat containing 39	NM_175413|Lrrc39|109245|leucine rich repeat containing 39	AK039277|Lrrc39|109245|leucine rich repeat containing 39	AK079125|Lrrc39|109245|leucine rich repeat containing 39	AK008119|Lrrc39|109245|leucine rich repeat containing 39	AK052159|Lrrc39|109245|leucine rich repeat containing 39	BC119529|Lrrc39|109245|leucine rich repeat containing 39	BC119530|Lrrc39|109245|leucine rich repeat containing 39	AK046671|Lrrc39|109245|leucine rich repeat containing 39
mm9_v1_chr16_-_88563421_88563427	4.0175	LHX3,4.p2	AK133810|Cldn8|54420|claudin 8	NM_018778|Cldn8|54420|claudin 8
mm9_v1_chr17_-_14831233_14831243	4.01116	LHX3,4.p2	AK142552|Thbs2|21826|thrombospondin 2
mm9_v1_chr2_+_74707394_74707441	3.99186	LHX3,4.p2	AK207939|Mtx2|53375|metaxin 2	AK212612|Mtx2|53375|metaxin 2	AK216047|Mtx2|53375|metaxin 2
mm9_v1_chr6_+_29809595_29809632	3.93477	LHX3,4.p2	NM_001171001|Ahcyl2|74340|S-adenosylhomocysteine hydrolase-like 2	AK053527|Ahcyl2|74340|S-adenosylhomocysteine hydrolase-like 2
mm9_v1_chr12_-_105711324_105711536	3.84171	LHX3,4.p2	AB221548|Gsc|14836|goosecoid homeobox	Y13150|Gsc|14836|goosecoid homeobox	NM_010351|Gsc|14836|goosecoid homeobox	Y13149|Gsc|14836|goosecoid homeobox	X99239|Gsc|14836|goosecoid homeobox
mm9_v1_chr10_-_117252126_117252166	3.81706	LHX3,4.p2	
mm9_v1_chr2_-_73291933_73291985	3.79658	LHX3,4.p2	AK156547|Wipf1|215280|WAS/WASL interacting protein family, member 1
mm9_v1_chr1_-_71632834_71632860	3.79348	LHX3,4.p2	BC020287|Fn1|14268|fibronectin 1
mm9_v1_chr10_-_116786025_116786098	3.7633	LHX3,4.p2	AK018657|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chr14_+_27813547_27813547	3.74277	LHX3,4.p2	NM_010420|Hesx1|15209|homeobox gene expressed in ES cells	U40720|Hesx1|15209|homeobox gene expressed in ES cells
mm9_v1_chr19_-_39961258_39961288	3.7351	LHX3,4.p2	NM_001104525|Cyp2c69|100043108|cytochrome P450, family 2, subfamily c, polypeptide 69	BC145630|Cyp2c69|100043108|cytochrome P450, family 2, subfamily c, polypeptide 69
mm9_v1_chr6_+_54839147_54839273	3.71193	LHX3,4.p2	AK078666|Znrf2|387524|zinc and ring finger 2
mm9_v1_chr15_+_10106992_10106998	3.69319	LHX3,4.p2	AK054551|Prlr|19116|prolactin receptor	NM_011169|Prlr|19116|prolactin receptor	AK042147|Prlr|19116|prolactin receptor
mm9_v1_chr16_+_43247396_43247452	3.6436	LHX3,4.p2	AK005028|Zbtb20|56490|zinc finger and BTB domain containing 20	NM_019778|Zbtb20|56490|zinc finger and BTB domain containing 20	NM_181058|Zbtb20|56490|zinc finger and BTB domain containing 20	BC031114|Zbtb20|56490|zinc finger and BTB domain containing 20
mm9_v1_chr8_+_46970860_46970893	3.64084	LHX3,4.p2	AK016447|Pdlim3|53318|PDZ and LIM domain 3	BC070418|Pdlim3|53318|PDZ and LIM domain 3
mm9_v1_chr12_+_82049290_82049329	3.61307	LHX3,4.p2	AK135336|Srsf5|20384|serine/arginine-rich splicing factor 5
mm9_v1_chr10_-_106931783_106931851	3.58412	LHX3,4.p2	BC119209|Myf6|17878|myogenic factor 6	BC119211|Myf6|17878|myogenic factor 6	NM_008657|Myf6|17878|myogenic factor 6	X59060|Myf6|17878|myogenic factor 6	AK029370|Myf6|17878|myogenic factor 6
mm9_v1_chr7_-_110976499_110976501	3.57964	LHX3,4.p2	S71555|Hbb-b1|15129|hemoglobin, beta adult major chain	S71558|Hbb-b1|15129|hemoglobin, beta adult major chain	S71559|Hbb-b1|15129|hemoglobin, beta adult major chain
mm9_v1_chr13_+_49639799_49639811	3.57144	LHX3,4.p2	NM_001172481|Aspn|66695|asporin	NM_025711|Aspn|66695|asporin
mm9_v1_chr9_+_96159123_96159160	3.54682	LHX3,4.p2	NM_001184709|Tfdp2|211586|transcription factor Dp 2	AK033356|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr9_-_15105965_15105999	3.53038	LHX3,4.p2	BC016078|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene	NM_133732|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene
mm9_v1_chr8_-_42140113_42140147	3.52286	LHX3,4.p2	BC043321|Mtus1|102103|mitochondrial tumor suppressor 1	AK043214|Mtus1|102103|mitochondrial tumor suppressor 1	AY626782|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005864|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr10_-_127613494_127613534	3.50899	LHX3,4.p2	BC021627|Rbms2|56516|RNA binding motif, single stranded interacting protein 2	AB026583|Rbms2|56516|RNA binding motif, single stranded interacting protein 2	AK207205|Rbms2|56516|RNA binding motif, single stranded interacting protein 2	AK054482|Rbms2|56516|RNA binding motif, single stranded interacting protein 2
mm9_v1_chr11_-_98862163_98862321	3.47162	LHX3,4.p2	AK138079|Top2a|21973|topoisomerase (DNA) II alpha	BC094326|Top2a|21973|topoisomerase (DNA) II alpha
mm9_v1_chr1_+_45390415_45390462	3.41984	LHX3,4.p2	BC039923|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr6_+_37820779_37820898	3.40243	LHX3,4.p2	AK080890|Trim24|21848|tripartite motif-containing 24	NM_145076|Trim24|21848|tripartite motif-containing 24	S78219|Trim24|21848|tripartite motif-containing 24	S78221|Trim24|21848|tripartite motif-containing 24	AK084870|Trim24|21848|tripartite motif-containing 24	BC056959|Trim24|21848|tripartite motif-containing 24
mm9_v1_chr6_-_3444484_3444497	3.39111	LHX3,4.p2	BC096374|Hepacam2|101202|HEPACAM family member 2	AK033728|Hepacam2|101202|HEPACAM family member 2	AK050501|Hepacam2|101202|HEPACAM family member 2	NM_178899|Hepacam2|101202|HEPACAM family member 2
mm9_v1_chr7_-_56892061_56892218	3.36832	LHX3,4.p2	BC082541|Dbx1|13172|developing brain homeobox 1	NM_001005232|Dbx1|13172|developing brain homeobox 1	S75837|Dbx1|13172|developing brain homeobox 1
mm9_v1_chr6_+_83290548_83290557	3.34616	LHX3,4.p2	AK152254|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)
mm9_v1_chr4_+_129526991_129527050	3.34018	LHX3,4.p2	
mm9_v1_chr10_+_87321789_87322010	3.33725	LHX3,4.p2	NM_001111275|Igf1|16000|insulin-like growth factor 1	NM_010512|Igf1|16000|insulin-like growth factor 1	AK050118|Igf1|16000|insulin-like growth factor 1	AK081019|Igf1|16000|insulin-like growth factor 1	AK165471|Igf1|16000|insulin-like growth factor 1	AY878192|Igf1|16000|insulin-like growth factor 1	AY878193|Igf1|16000|insulin-like growth factor 1	AK052033|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr17_-_56144975_56145021	3.32907	LHX3,4.p2	BC026642|Stap2|106766|signal transducing adaptor family member 2	NM_145934|Stap2|106766|signal transducing adaptor family member 2	AK050172|Stap2|106766|signal transducing adaptor family member 2	AK050131|Stap2|106766|signal transducing adaptor family member 2
mm9_v1_chr11_-_94154354_94154488	3.32558	LHX3,4.p2	BC055921|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)
mm9_v1_chr10_-_36858671_36858801	3.31294	LHX3,4.p2	BC046601|Marcks|17118|myristoylated alanine rich protein kinase C substrate	M60474|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC002068|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC039911|Marcks|17118|myristoylated alanine rich protein kinase C substrate	NM_008538|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr19_-_39887217_39887303	3.30179	LHX3,4.p2	AF047727|Cyp2c40|13099|cytochrome P450, family 2, subfamily c, polypeptide 40	BC139471|Cyp2c40|13099|cytochrome P450, family 2, subfamily c, polypeptide 40	BC139472|Cyp2c40|13099|cytochrome P450, family 2, subfamily c, polypeptide 40	NM_010004|Cyp2c40|13099|cytochrome P450, family 2, subfamily c, polypeptide 40
mm9_v1_chr9_-_15105864_15105946	3.29585	LHX3,4.p2	CT010296|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene	BC011540|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene	BC025213|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene
mm9_v1_chr10_+_101621491_101621538	3.27635	LHX3,4.p2	NM_001162368|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)	AK015051|4930402I19Rik|73798|RIKEN cDNA 4930402I19 gene
mm9_v1_chr9_+_92502076_92502169	3.25466	LHX3,4.p2	
mm9_v1_chr6_-_3295980_3296101	3.2254	LHX3,4.p2	AK035387|9530028C05|330256|hypothetical protein 9530028C05
mm9_v1_chr15_+_102839909_102840036	3.21756	LHX3,4.p2	X16511|Hoxc6|15425|homeobox C6	BC028482|Hoxc6|15425|homeobox C6	NM_010465|Hoxc6|15425|homeobox C6	BC141061|Hoxc6|15425|homeobox C6	AB221685|Hoxc6|15425|homeobox C6
mm9_v1_chr17_-_36169460_36169530	3.2086	LHX3,4.p2	
mm9_v1_chrX_+_147024463_147024599	3.17641	LHX3,4.p2	AK132629|Pfkfb1|18639|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	NM_008824|Pfkfb1|18639|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	BC132561|Pfkfb1|18639|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	BC132563|Pfkfb1|18639|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm9_v1_chr17_-_14831262_14831287	3.16988	LHX3,4.p2	NM_011581|Thbs2|21826|thrombospondin 2
mm9_v1_chr11_+_67013553_67013615	3.16943	LHX3,4.p2	DQ021871|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult	AK041122|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult	AY963800|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult	BC108329|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult	NM_030679|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult
mm9_v1_chr4_-_147183894_147183948	3.14964	LHX3,4.p2	NM_001127189|Gm13157|100041677|predicted gene 13157	AK011687|2610036A22Rik|70190|RIKEN cDNA 2610036A22 gene
mm9_v1_chr4_-_82151180_82151288	3.12017	LHX3,4.p2	AK034793|Nfib|18028|nuclear factor I/B	Y07686|Nfib|18028|nuclear factor I/B	AK146480|Nfib|18028|nuclear factor I/B	NM_001113209|Nfib|18028|nuclear factor I/B	NM_001113210|Nfib|18028|nuclear factor I/B	NM_008687|Nfib|18028|nuclear factor I/B	AK034261|Nfib|18028|nuclear factor I/B	AK087480|Nfib|18028|nuclear factor I/B	AK084941|Nfib|18028|nuclear factor I/B
mm9_v1_chr7_-_53922712_53922746	3.09556	LHX3,4.p2	AK157858|Tph1|21990|tryptophan hydroxylase 1	J04758|Tph1|21990|tryptophan hydroxylase 1	NM_001136084|Tph1|21990|tryptophan hydroxylase 1	AF273257|Tph1|21990|tryptophan hydroxylase 1	AK146134|Tph1|21990|tryptophan hydroxylase 1	AK146171|Tph1|21990|tryptophan hydroxylase 1
mm9_v1_chrX_+_154137193_154137229	3.08429	LHX3,4.p2	BC132358|Smpx|66106|small muscle protein, X-linked	BC138801|Smpx|66106|small muscle protein, X-linked
mm9_v1_chr16_+_45224449_45224465	3.08171	LHX3,4.p2	AK041334|Btla|208154|B and T lymphocyte associated	BC108963|Btla|208154|B and T lymphocyte associated	BC108964|Btla|208154|B and T lymphocyte associated	NM_001037719|Btla|208154|B and T lymphocyte associated	NM_177584|Btla|208154|B and T lymphocyte associated	AY293285|Btla|208154|B and T lymphocyte associated
mm9_v1_chr6_-_69367406_69367460	3.0652	LHX3,4.p2	DQ372799|Igkv4-68|384515|immunoglobulin kappa variable 4-68
mm9_v1_chr15_+_31154176_31154177	3.06061	LHX3,4.p2	AK152216|Dap|223453|death-associated protein
mm9_v1_chr11_+_66984528_66984720	3.05023	LHX3,4.p2	DQ020160|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	NM_001039545|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	AK036437|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	AY963799|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	DQ020161|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	DQ020162|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	BC008538|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult
mm9_v1_chr4_+_34841027_34841057	3.02349	LHX3,4.p2	NM_009889|Cga|12640|glycoprotein hormones, alpha subunit	BC087926|Cga|12640|glycoprotein hormones, alpha subunit	J00643|Cga|12640|glycoprotein hormones, alpha subunit
mm9_v1_chr8_+_46970814_46970842	3.01579	LHX3,4.p2	AF002283|Pdlim3|53318|PDZ and LIM domain 3	NM_016798|Pdlim3|53318|PDZ and LIM domain 3	AK078421|Pdlim3|53318|PDZ and LIM domain 3	AK141331|Pdlim3|53318|PDZ and LIM domain 3	AK164054|Pdlim3|53318|PDZ and LIM domain 3
mm9_v1_chr9_+_108241599_108241672	3.00684	LHX3,4.p2	AK150548|Gpx1|14775|glutathione peroxidase 1	AK002245|Gpx1|14775|glutathione peroxidase 1	AK010999|Gpx1|14775|glutathione peroxidase 1	AK011019|Gpx1|14775|glutathione peroxidase 1	AK028171|Gpx1|14775|glutathione peroxidase 1	AK154833|Gpx1|14775|glutathione peroxidase 1	AK160388|Gpx1|14775|glutathione peroxidase 1	NM_008160|Gpx1|14775|glutathione peroxidase 1	BC086649|Gpx1|14775|glutathione peroxidase 1
mm9_v1_chr2_+_36086059_36086082	2.99675	LHX3,4.p2	AK134163|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AY547265|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	CT010314|Ptgs1|19224|prostaglandin-endoperoxide synthase 1
mm9_v1_chr6_+_4471231_4471253	2.98811	LHX3,4.p2	AK159958|Col1a2|12843|collagen, type I, alpha 2	AK164628|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr3_-_27316628_27316630	2.9534	LHX3,4.p2	AK039335|Fndc3b|72007|fibronectin type III domain containing 3B
mm9_v1_chr2_+_152106052_152106158	2.91702	LHX3,4.p2	AK042898|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide
mm9_v1_chr7_-_22813915_22813915	2.90528	LHX3,4.p2	NM_001166746|Vmn1r111|667292|vomeronasal 1 receptor 111	NM_001166839|Gm4172|100043016|predicted gene 4172	NM_001167168|Gm4220|100043088|predicted gene 4220	NM_001167169|Gm4179|100043029|predicted gene 4179
mm9_v1_chr17_-_36169573_36169660	2.89973	LHX3,4.p2	AF100699|H2-T23|15040|histocompatibility 2, T region locus 23	AF100700|H2-T23|15040|histocompatibility 2, T region locus 23	AF100702|H2-T23|15040|histocompatibility 2, T region locus 23	AF057279|H2-T23|15040|histocompatibility 2, T region locus 23	AF082510|H2-T23|15040|histocompatibility 2, T region locus 23	BC099472|H2-T23|15040|histocompatibility 2, T region locus 23	AB359230|H2-T23|15040|histocompatibility 2, T region locus 23	AK133502|H2-T23|15040|histocompatibility 2, T region locus 23	M11284|H2-T23|15040|histocompatibility 2, T region locus 23	NM_010398|H2-T23|15040|histocompatibility 2, T region locus 23
mm9_v1_chr5_-_72692122_72692149	2.88082	LHX3,4.p2	AK005572|Corin|53419|corin
mm9_v1_chr19_-_44471675_44471892	2.8796	LHX3,4.p2	AK012370|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr17_-_14831095_14831102	2.8648	LHX3,4.p2	L07803|Thbs2|21826|thrombospondin 2	M64866|Thbs2|21826|thrombospondin 2	AK132508|Thbs2|21826|thrombospondin 2
mm9_v1_chr1_-_72905107_72905143	2.85956	LHX3,4.p2	AK011683|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr7_-_20960758_20960758	2.85764	LHX3,4.p2	NM_001166713|Gm5728|435949|predicted gene 5728	NM_001166751|Gm8660|667485|predicted gene 8660
mm9_v1_chr2_-_155771090_155771102	2.82879	LHX3,4.p2	BC034546|Gdf5|14563|growth differentiation factor 5	NM_008109|Gdf5|14563|growth differentiation factor 5	U08337|Gdf5|14563|growth differentiation factor 5
mm9_v1_chr17_-_14831058_14831092	2.81171	LHX3,4.p2	BC053702|Thbs2|21826|thrombospondin 2
mm9_v1_chr4_+_116265582_116265626	2.80598	LHX3,4.p2	BC002292|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1
mm9_v1_chr6_-_68967061_68967109	2.80023	LHX3,4.p2	
mm9_v1_chr3_-_67319413_67319444	2.77496	LHX3,4.p2	AK077393|Rarres1|109222|retinoic acid receptor responder (tazarotene induced) 1	NM_001164763|Rarres1|109222|retinoic acid receptor responder (tazarotene induced) 1
mm9_v1_chr19_-_44472087_44472105	2.77166	LHX3,4.p2	AK078704|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr14_+_119380708_119380718	2.768	LHX3,4.p2	
mm9_v1_chr1_+_169528838_169528848	2.70027	LHX3,4.p2	M84819|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr1_-_140071630_140071766	2.69641	LHX3,4.p2	M11934|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	M92933|Ptprc|19264|protein tyrosine phosphatase, receptor type, C
mm9_v1_chr7_+_148127289_148127427	2.67374	LHX3,4.p2	AK171694|Athl1|212974|ATH1, acid trehalase-like 1 (yeast)
mm9_v1_chr17_+_13208071_13208135	2.66622	LHX3,4.p2	AK206580|Sod2|20656|superoxide dismutase 2, mitochondrial
mm9_v1_chr1_-_140071818_140071883	2.65503	LHX3,4.p2	BC131655|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	AK088215|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	BC028512|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	M14342|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	AK154893|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	AK171802|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	AK054056|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	NM_001111316|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	NM_011210|Ptprc|19264|protein tyrosine phosphatase, receptor type, C
mm9_v1_chr6_-_87793898_87794088	2.64628	LHX3,4.p2	AK207643|Cnbp|12785|cellular nucleic acid binding protein	AK188144|Cnbp|12785|cellular nucleic acid binding protein
mm9_v1_chr7_-_21095882_21095882	2.61561	LHX3,4.p2	NM_001166737|Vmn1r103|667129|vomeronasal 1 receptor 103
mm9_v1_chr14_+_27707789_27707789	2.59783	LHX3,4.p2	AK052884|Asb14|142687|ankyrin repeat and SOCS box-containing 14	NM_001170748|Asb14|142687|ankyrin repeat and SOCS box-containing 14	NM_080856|Asb14|142687|ankyrin repeat and SOCS box-containing 14
mm9_v1_chr15_+_31154137_31154175	2.59566	LHX3,4.p2	NM_146057|Dap|223453|death-associated protein	AK171259|Dap|223453|death-associated protein	AK152884|Dap|223453|death-associated protein
mm9_v1_chr3_-_103546233_103546253	2.55458	LHX3,4.p2	AK031871|Hipk1|15257|homeodomain interacting protein kinase 1
mm9_v1_chr11_-_106175797_106175983	2.52453	LHX3,4.p2	CT010358|Cd79b|15985|CD79B antigen	AK143573|Cd79b|15985|CD79B antigen	BC012226|Cd79b|15985|CD79B antigen	NM_008339|Cd79b|15985|CD79B antigen	J03857|Cd79b|15985|CD79B antigen
mm9_v1_chr2_+_112307393_112307430	2.51722	LHX3,4.p2	AK045622|2900064A13Rik|73024|RIKEN cDNA 2900064A13 gene
mm9_v1_chr8_+_116657473_116657573	2.51267	LHX3,4.p2	AK088191|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	NM_024437|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	NM_024446|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AF338424|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK004924|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	BC069843|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK011172|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	BC033046|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK008824|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7
mm9_v1_chr1_-_141982814_141983012	2.50026	LHX3,4.p2	AK075670|Cfh|12628|complement component factor h	M31980|Cfh|12628|complement component factor h
mm9_v1_chr10_+_101621712_101621712	2.49289	LHX3,4.p2	AK032009|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)	NM_001162369|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm9_v1_chr10_+_23614493_23614678	2.48522	LHX3,4.p2	NM_011704|Vnn1|22361|vanin 1	AK145984|Vnn1|22361|vanin 1	AK002773|Vnn1|22361|vanin 1	AK167427|Vnn1|22361|vanin 1	AJ132098|Vnn1|22361|vanin 1	BC019203|Vnn1|22361|vanin 1
mm9_v1_chr3_+_88342459_88342597	2.47458	LHX3,4.p2	AK012557|Mex3a|72640|mex3 homolog A (C. elegans)
mm9_v1_chrX_-_136406046_136406192	2.47379	LHX3,4.p2	BC132153|Morc4|75746|microrchidia 4	BC132497|Morc4|75746|microrchidia 4	BC098483|Morc4|75746|microrchidia 4	AK017472|Morc4|75746|microrchidia 4	AK048519|Morc4|75746|microrchidia 4	AK164017|Morc4|75746|microrchidia 4	AK053895|Morc4|75746|microrchidia 4	AK032807|Morc4|75746|microrchidia 4	NM_001193309|Morc4|75746|microrchidia 4	NM_029413|Morc4|75746|microrchidia 4
mm9_v1_chr9_-_103256690_103256767	2.47113	LHX3,4.p2	BC030486|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC064103|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3
mm9_v1_chrX_-_103207106_103207254	2.46144	LHX3,4.p2	AK144696|Magt1|67075|magnesium transporter 1	AK012185|Magt1|67075|magnesium transporter 1	AK013243|Magt1|67075|magnesium transporter 1	AK136622|Magt1|67075|magnesium transporter 1	BC003881|Magt1|67075|magnesium transporter 1	AK018623|Magt1|67075|magnesium transporter 1	AK010320|Magt1|67075|magnesium transporter 1	DQ000005|Magt1|67075|magnesium transporter 1	NM_001190409|Magt1|67075|magnesium transporter 1	NM_025952|Magt1|67075|magnesium transporter 1
mm9_v1_chr6_-_115568804_115568831	2.43403	LHX3,4.p2	AK189599|Raf1|110157|v-raf-leukemia viral oncogene 1
mm9_v1_chr1_+_141398282_141398309	2.36051	LHX3,4.p2	NM_031164|F13b|14060|coagulation factor XIII, beta subunit	AK149397|F13b|14060|coagulation factor XIII, beta subunit	D10071|F13b|14060|coagulation factor XIII, beta subunit	BC030166|F13b|14060|coagulation factor XIII, beta subunit
mm9_v1_chrX_+_154137114_154137143	2.36033	LHX3,4.p2	BC051197|Smpx|66106|small muscle protein, X-linked	BC061051|Smpx|66106|small muscle protein, X-linked
mm9_v1_chr11_-_46520535_46520580	2.34586	LHX3,4.p2	BC025096|Timd2|171284|T-cell immunoglobulin and mucin domain containing 2	BC028829|Timd2|171284|T-cell immunoglobulin and mucin domain containing 2
mm9_v1_chr10_-_118293979_118293989	2.3366	LHX3,4.p2	AK007736|Dyrk2|69181|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm9_v1_chr3_+_89866717_89866721	2.33382	LHX3,4.p2	AK007060|1700094D03Rik|73545|RIKEN cDNA 1700094D03 gene	NM_028567|1700094D03Rik|73545|RIKEN cDNA 1700094D03 gene	BC048560|1700094D03Rik|73545|RIKEN cDNA 1700094D03 gene
mm9_v1_chr7_-_23628623_23628623	2.33193	LHX3,4.p2	NM_001166758|Vmn1r159|670857|vomeronasal 1 receptor 159
mm9_v1_chr6_-_130287518_130287643	2.32703	LHX3,4.p2	U56404|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	U56405|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC101952|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC103543|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC103544|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC103545|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC132524|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC132526|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC145192|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC145193|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	U10305|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	AK159595|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	U49868|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	NM_010648|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	U09739|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3
mm9_v1_chr7_-_21838802_21838802	2.32354	LHX3,4.p2	NM_001166715|Vmn1r120|435953|vomeronasal 1 receptor 120
mm9_v1_chr12_-_102988596_102988615	2.30619	LHX3,4.p2	
mm9_v1_chr1_+_90203286_90203286	2.30476	LHX3,4.p2	BC117934|Trpm8|171382|transient receptor potential cation channel, subfamily M, member 8	NM_134252|Trpm8|171382|transient receptor potential cation channel, subfamily M, member 8
mm9_v1_chr13_+_27334298_27334313	2.28682	LHX3,4.p2	AK005542|Prl3b1|18776|prolactin family 3, subfamily b, member 1	AK005543|Prl3b1|18776|prolactin family 3, subfamily b, member 1	AK131667|Prl3b1|18776|prolactin family 3, subfamily b, member 1	M14647|Prl3b1|18776|prolactin family 3, subfamily b, member 1	NM_008865|Prl3b1|18776|prolactin family 3, subfamily b, member 1	AK167483|Prl3b1|18776|prolactin family 3, subfamily b, member 1	BC099386|Prl3b1|18776|prolactin family 3, subfamily b, member 1
mm9_v1_chr9_+_44206431_44206438	2.27	LHX3,4.p2	AK003620|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4	AF080469|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm9_v1_chr7_-_110976314_110976437	2.26404	LHX3,4.p2	AB020013|Hbb-b1|15129|hemoglobin, beta adult major chain	AB020014|Hbb-b2|15130|hemoglobin, beta adult minor chain	AB020015|Hbb-b1|15129|hemoglobin, beta adult major chain	AB020016|Hbb-b2|15130|hemoglobin, beta adult minor chain	AB020017|Hbb-b2|15130|hemoglobin, beta adult minor chain	AB364477|Hbb-b1|15129|hemoglobin, beta adult major chain	AB364478|Hbb-b2|15130|hemoglobin, beta adult minor chain	AF149782|Hbb-b2|15130|hemoglobin, beta adult minor chain
mm9_v1_chr7_-_23284696_23284696	2.25999	LHX3,4.p2	NM_001166712|Vmn1r151|435947|vomeronasal 1 receptor 151
mm9_v1_chr2_-_38640034_38640034	2.25206	LHX3,4.p2	NM_001159548|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	NM_001159549|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1
mm9_v1_chr4_+_147320793_147320843	2.2516	LHX3,4.p2	AK183513|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	AK197606|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	AK209381|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene
mm9_v1_chr11_-_100068823_100068834	2.24355	LHX3,4.p2	BC011074|Krt14|16664|keratin 14	NM_016958|Krt14|16664|keratin 14
mm9_v1_chr7_+_22296798_22296798	2.24337	LHX3,4.p2	NM_001166753|Vmn1r155|667530|vomeronasal 1 receptor 155	NM_001166759|Vmn1r107|673977|vomeronasal 1 receptor 107	NM_001166846|Vmn1r110|100043561|vomeronasal 1 receptor 110	NM_001166848|Vmn1r130|100043596|vomeronasal 1 receptor 130	NM_001166849|Vmn1r137|100043614|vomeronasal 1 receptor 137	NM_001166850|Vmn1r165|100043667|vomeronasal 1 receptor 165
mm9_v1_chr11_+_60351469_60351612	2.22882	LHX3,4.p2	AK053695|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	AK049130|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	AK169700|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	BC052076|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	AK053700|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	AK162072|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	AK163294|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)
mm9_v1_chr13_+_27149438_27149473	2.22491	LHX3,4.p2	NM_001163530|Prl|19109|prolactin	NM_011164|Prl|19109|prolactin	AK017547|Prl|19109|prolactin	AK161619|Prl|19109|prolactin	AK077493|Prl|19109|prolactin	AK017520|Prl|19109|prolactin	X04418|Prl|19109|prolactin	AK017521|Prl|19109|prolactin	AK017579|Prl|19109|prolactin	AK017584|Prl|19109|prolactin	AK133645|Prl|19109|prolactin	AK133736|Prl|19109|prolactin	AK133752|Prl|19109|prolactin	AK161553|Prl|19109|prolactin	AK161557|Prl|19109|prolactin	AK161565|Prl|19109|prolactin	AK161594|Prl|19109|prolactin	BC061141|Prl|19109|prolactin	X02892|Prl|19109|prolactin	AK017562|Prl|19109|prolactin
mm9_v1_chr9_-_96632093_96632093	2.21754	LHX3,4.p2	AK044467|Zbtb38|245007|zinc finger and BTB domain containing 38	NM_175537|Zbtb38|245007|zinc finger and BTB domain containing 38
mm9_v1_chr2_+_36086008_36086055	2.20832	LHX3,4.p2	AK138432|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK046457|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK142741|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK163609|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK170664|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK160886|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	BC005573|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	BC023322|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	M34141|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK170414|Ptgs1|19224|prostaglandin-endoperoxide synthase 1
mm9_v1_chr3_+_142283605_142283716	2.19017	LHX3,4.p2	BC032882|Gbp2|14469|guanylate binding protein 2	AF077007|Gbp2|14469|guanylate binding protein 2	NM_010260|Gbp2|14469|guanylate binding protein 2	BC011336|Gbp2|14469|guanylate binding protein 2	AJ007970|Gbp2|14469|guanylate binding protein 2	BC049141|Gbp2|14469|guanylate binding protein 2	AF109168|Gbp2|14469|guanylate binding protein 2	AK150138|Gbp2|14469|guanylate binding protein 2
mm9_v1_chr19_-_39723518_39723548	2.18674	LHX3,4.p2	BC092260|Cyp2c67|545288|cytochrome P450, family 2, subfamily c, polypeptide 67	BC106142|Cyp2c67|545288|cytochrome P450, family 2, subfamily c, polypeptide 67	NM_001024719|Cyp2c67|545288|cytochrome P450, family 2, subfamily c, polypeptide 67	AK149389|Cyp2c67|545288|cytochrome P450, family 2, subfamily c, polypeptide 67
mm9_v1_chr4_+_64785207_64785207	2.16735	LHX3,4.p2	NM_021362|Pappa|18491|pregnancy-associated plasma protein A
mm9_v1_chr7_-_20753725_20753725	2.14708	LHX3,4.p2	NM_001166723|Vmn1r94|620537|vomeronasal 1 receptor 94	NM_001166749|Vmn1r142|667464|vomeronasal 1 receptor 142
mm9_v1_chr19_+_20676453_20676504	2.10444	LHX3,4.p2	M74570|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	BC044729|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	BC054386|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	NM_013467|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	BC035322|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	S75713|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1
mm9_v1_chr4_+_97444450_97444485	2.07799	LHX3,4.p2	AK054310|Nfia|18027|nuclear factor I/A	AK137731|Nfia|18027|nuclear factor I/A
mm9_v1_chr10_+_97110043_97110069	2.07077	LHX3,4.p2	AK137179|Epyc|13516|epiphycan	D78274|Epyc|13516|epiphycan
mm9_v1_chr14_+_124059330_124059403	2.06949	LHX3,4.p2	AK051773|Itgbl1|223272|integrin, beta-like 1	NM_145467|Itgbl1|223272|integrin, beta-like 1	BC020152|Itgbl1|223272|integrin, beta-like 1	AK029068|Itgbl1|223272|integrin, beta-like 1
mm9_v1_chr2_+_110561733_110561771	2.05957	LHX3,4.p2	AY198336|Muc15|269328|mucin 15	AK052840|Muc15|269328|mucin 15	AK142590|Muc15|269328|mucin 15	NM_172979|Muc15|269328|mucin 15	BC094506|Muc15|269328|mucin 15	BC116796|Muc15|269328|mucin 15	BC119176|Muc15|269328|mucin 15
mm9_v1_chr7_+_107307748_107307807	2.03932	LHX3,4.p2	AK011925|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	BC115472|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	NM_026010|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	BC115473|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	AK008917|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	AK013127|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)
mm9_v1_chr5_+_88354611_88354672	2.0356	LHX3,4.p2	AK021350|Csn3|12994|casein kappa	AK085710|Csn3|12994|casein kappa	AK164788|Csn3|12994|casein kappa	BC005653|Csn3|12994|casein kappa	BC035443|Csn3|12994|casein kappa	BC049949|Csn3|12994|casein kappa	BC004601|Csn3|12994|casein kappa	BC050269|Csn3|12994|casein kappa	AK142607|Csn3|12994|casein kappa	NM_007786|Csn3|12994|casein kappa	AK142673|Csn3|12994|casein kappa	M10114|Csn3|12994|casein kappa
mm9_v1_chr18_+_50355539_50355658	2.01674	LHX3,4.p2	
mm9_v1_chr7_-_23014502_23014502	2.00778	LHX3,4.p2	NM_001166742|Vmn1r118|667259|vomeronasal 1 receptor 118	NM_001167150|Gm8453|667094|predicted gene 8453	NM_001167151|Gm4498|100043523|predicted gene 4498
mm9_v1_chr3_+_79690856_79690884	1.9982	LHX3,4.p2	AK052367|Fam198b|68659|family with sequence similarity 198, member B
mm9_v1_chr17_+_23949101_23949124	1.96594	LHX3,4.p2	AK081577|Srrm2|75956|serine/arginine repetitive matrix 2
mm9_v1_chr3_-_14778441_14778459	1.96554	LHX3,4.p2	BC110681|Car1|12346|carbonic anhydrase 1	BC011223|Car1|12346|carbonic anhydrase 1	AK033719|Car1|12346|carbonic anhydrase 1	AK162331|Car1|12346|carbonic anhydrase 1	NM_001083957|Car1|12346|carbonic anhydrase 1
mm9_v1_chr3_-_131047840_131047850	1.95278	LHX3,4.p2	NM_028943|Sgms2|74442|sphingomyelin synthase 2	BC117782|Sgms2|74442|sphingomyelin synthase 2	AK016659|Sgms2|74442|sphingomyelin synthase 2
mm9_v1_chr7_-_23156057_23156057	1.94975	LHX3,4.p2	NM_001166713|Gm5728|435949|predicted gene 5728	NM_001166751|Gm8660|667485|predicted gene 8660
mm9_v1_chr12_-_114665550_114665585	1.94354	LHX3,4.p2	AK134155|Ighg|380794|Immunoglobulin heavy chain (gamma polypeptide)
mm9_v1_chr7_+_21119185_21119185	1.91685	LHX3,4.p2	NM_001166738|Vmn1r104|667135|vomeronasal 1 receptor 104	NM_001166752|Vmn1r152|667504|vomeronasal 1 receptor 152
mm9_v1_chr5_-_89088843_89089007	1.90959	LHX3,4.p2	AK208573|Grsf1|231413|G-rich RNA sequence binding factor 1	AK211991|Grsf1|231413|G-rich RNA sequence binding factor 1
mm9_v1_chr2_+_9802878_9802989	1.90495	LHX3,4.p2	AK015124|4930412O13Rik|381347|RIKEN cDNA 4930412O13 gene	AK029605|4930412O13Rik|381347|RIKEN cDNA 4930412O13 gene
mm9_v1_chr7_+_23307985_23307985	1.89174	LHX3,4.p2	NM_001166738|Vmn1r104|667135|vomeronasal 1 receptor 104	NM_001166752|Vmn1r152|667504|vomeronasal 1 receptor 152
mm9_v1_chr9_+_123429291_123429490	1.89139	LHX3,4.p2	AK180316|Limd1|29806|LIM domains containing 1	AK212225|Limd1|29806|LIM domains containing 1	AK215267|Limd1|29806|LIM domains containing 1	AK215631|Limd1|29806|LIM domains containing 1	AK216846|Limd1|29806|LIM domains containing 1	AK220081|Limd1|29806|LIM domains containing 1	AK210611|Limd1|29806|LIM domains containing 1
mm9_v1_chr7_+_16633755_16633793	1.87946	LHX3,4.p2	AK008102|2010004M13Rik|76511|RIKEN cDNA 2010004M13 gene
mm9_v1_chr18_-_39572137_39572180	1.87395	LHX3,4.p2	AK171439|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	AK163857|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr2_+_31071798_31071895	1.85683	LHX3,4.p2	AK200289|Gpr107|277463|G protein-coupled receptor 107
mm9_v1_chr1_+_174437040_174437140	1.84539	LHX3,4.p2	AK019231|Tagln2|21346|transgelin 2
mm9_v1_chr6_-_138028436_138028436	1.81406	LHX3,4.p2	NM_177787|Slc15a5|277898|solute carrier family 15, member 5
mm9_v1_chr1_-_45559904_45559916	1.80731	LHX3,4.p2	AK147220|Col5a2|12832|collagen, type V, alpha 2	AK080811|Col5a2|12832|collagen, type V, alpha 2	AK084285|Col5a2|12832|collagen, type V, alpha 2	AK132413|Col5a2|12832|collagen, type V, alpha 2	AK151929|Col5a2|12832|collagen, type V, alpha 2
mm9_v1_chr1_+_78507634_78507743	1.80477	LHX3,4.p2	NM_026713|Mogat1|68393|monoacylglycerol O-acyltransferase 1	BC031920|Mogat1|68393|monoacylglycerol O-acyltransferase 1
mm9_v1_chr17_-_31266539_31266557	1.79951	LHX3,4.p2	BC011042|Tff3|21786|trefoil factor 3, intestinal	AK008538|Tff3|21786|trefoil factor 3, intestinal	D38410|Tff3|21786|trefoil factor 3, intestinal	NM_011575|Tff3|21786|trefoil factor 3, intestinal
mm9_v1_chr7_+_108966826_108966826	1.78077	LHX3,4.p2	NM_008887|Phox2a|11859|paired-like homeobox 2a
mm9_v1_chr5_-_87853212_87853227	1.77728	LHX3,4.p2	BC015272|Ugt2b38|100559|UDP glucuronosyltransferase 2 family, polypeptide B38	BC057169|Ugt2b38|100559|UDP glucuronosyltransferase 2 family, polypeptide B38	BC069923|Ugt2b38|100559|UDP glucuronosyltransferase 2 family, polypeptide B38	AK034801|Ugt2b38|100559|UDP glucuronosyltransferase 2 family, polypeptide B38	NM_133894|Ugt2b38|100559|UDP glucuronosyltransferase 2 family, polypeptide B38
mm9_v1_chr1_+_34529567_34529633	1.77011	LHX3,4.p2	AK014043|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18
mm9_v1_chr7_-_21919146_21919146	1.76635	LHX3,4.p2	NM_001166714|Vmn1r122|435951|vomeronasal 1 receptor 122
mm9_v1_chr1_-_164816645_164816658	1.76212	LHX3,4.p2	AK129026|Fmo2|55990|flavin containing monooxygenase 2
mm9_v1_chr19_+_38470458_38470592	1.76164	LHX3,4.p2	BC137663|Tmem20|240660|transmembrane protein 20	BC137664|Tmem20|240660|transmembrane protein 20	AK041618|Tmem20|240660|transmembrane protein 20	NM_175507|Tmem20|240660|transmembrane protein 20	AK030517|Tmem20|240660|transmembrane protein 20	AK171987|Tmem20|240660|transmembrane protein 20	AK052365|Tmem20|240660|transmembrane protein 20
mm9_v1_chr4_+_116269290_116269349	1.75182	LHX3,4.p2	AK029257|Ccdc17|622665|coiled-coil domain containing 17	NM_001037916|Ccdc17|622665|coiled-coil domain containing 17	BC150874|Ccdc17|622665|coiled-coil domain containing 17	BC172023|Ccdc17|622665|coiled-coil domain containing 17
mm9_v1_chr2_+_162760505_162760606	1.75122	LHX3,4.p2	
mm9_v1_chr16_-_95680888_95680987	1.74148	LHX3,4.p2	AK142379|Erg|13876|avian erythroblastosis virus E-26 (v-ets) oncogene related
mm9_v1_chr9_+_21330620_21330720	1.73809	LHX3,4.p2	NM_001198794|AB124611|382062|cDNA sequence AB124611	NM_206536|AB124611|382062|cDNA sequence AB124611	AK154442|AB124611|382062|cDNA sequence AB124611	AK168311|AB124611|382062|cDNA sequence AB124611	AK170200|AB124611|382062|cDNA sequence AB124611	AK162293|AB124611|382062|cDNA sequence AB124611	AK137593|AB124611|382062|cDNA sequence AB124611	AB124611|AB124611|382062|cDNA sequence AB124611	AB124612|AB124611|382062|cDNA sequence AB124611
mm9_v1_chr19_-_45309725_45309963	1.7366	LHX3,4.p2	AB108497|Lbx1|16814|ladybird homeobox homolog 1 (Drosophila)	NM_010691|Lbx1|16814|ladybird homeobox homolog 1 (Drosophila)	BC119177|Lbx1|16814|ladybird homeobox homolog 1 (Drosophila)	BC120586|Lbx1|16814|ladybird homeobox homolog 1 (Drosophila)
mm9_v1_chr3_-_142054771_142054814	1.72501	LHX3,4.p2	DQ177283|Pdlim5|56376|PDZ and LIM domain 5	HM369794|Pdlim5|56376|PDZ and LIM domain 5	HM369795|Pdlim5|56376|PDZ and LIM domain 5	HM369796|Pdlim5|56376|PDZ and LIM domain 5	HM369797|Pdlim5|56376|PDZ and LIM domain 5	HM369798|Pdlim5|56376|PDZ and LIM domain 5	NM_001190857|Pdlim5|56376|PDZ and LIM domain 5	NM_022554|Pdlim5|56376|PDZ and LIM domain 5	AB016587|Pdlim5|56376|PDZ and LIM domain 5
mm9_v1_chr7_+_22617369_22617369	1.71412	LHX3,4.p2	NM_001166747|Vmn1r135|667404|vomeronasal 1 receptor 135	NM_001166755|Vmn1r163|667586|vomeronasal 1 receptor 163
mm9_v1_chr8_-_72433344_72433376	1.71243	LHX3,4.p2	AK004386|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr13_-_74832039_74832154	1.71043	LHX3,4.p2	AK037098|Cast|12380|calpastatin
mm9_v1_chr8_-_11199802_11199859	1.7088	LHX3,4.p2	X92439|Col4a1|12826|collagen, type IV, alpha 1
mm9_v1_chr10_+_128236561_128236694	1.69766	LHX3,4.p2	AK135651|Mmp19|58223|matrix metallopeptidase 19
mm9_v1_chr6_-_30908981_30908989	1.69044	LHX3,4.p2	DQ534758|Klf14|619665|Kruppel-like factor 14	AK030435|Klf14|619665|Kruppel-like factor 14	NM_001135093|Klf14|619665|Kruppel-like factor 14
mm9_v1_chr6_-_101266541_101266557	1.68884	LHX3,4.p2	AK020657|9530086O07Rik|78741|RIKEN cDNA 9530086O07 gene
mm9_v1_chrM_+_13543_13577	1.68429	LHX3,4.p2	
mm9_v1_chr5_-_88956788_88956921	1.6833	LHX3,4.p2	J00544|Igj|16069|immunoglobulin joining chain	AK078865|Igj|16069|immunoglobulin joining chain	M90766|Igj|16069|immunoglobulin joining chain	BC006026|Igj|16069|immunoglobulin joining chain	AK160344|Igj|16069|immunoglobulin joining chain	NM_152839|Igj|16069|immunoglobulin joining chain
mm9_v1_chr7_-_22949053_22949053	1.67031	LHX3,4.p2	NM_001166723|Vmn1r94|620537|vomeronasal 1 receptor 94	NM_001166749|Vmn1r142|667464|vomeronasal 1 receptor 142
mm9_v1_chr11_-_94254221_94254308	1.66859	LHX3,4.p2	BC048825|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AK155664|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AY841885|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	BC150788|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AF534127|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AF534128|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AF534129|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AY795569|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AK149551|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	NM_029600|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AK156615|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AK172420|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3
mm9_v1_chr16_-_35697586_35697611	1.66802	LHX3,4.p2	AK211101|Dirc2|224132|disrupted in renal carcinoma 2 (human)
mm9_v1_chr6_-_115542515_115542614	1.66162	LHX3,4.p2	AK028760|2510049J12Rik|70291|RIKEN cDNA 2510049J12 gene	AK011120|2510049J12Rik|70291|RIKEN cDNA 2510049J12 gene	NM_001101431|2510049J12Rik|70291|RIKEN cDNA 2510049J12 gene
mm9_v1_chr19_-_36763823_36763968	1.65536	LHX3,4.p2	AK142254|1500017E21Rik|668215|RIKEN cDNA 1500017E21 gene
mm9_v1_chr17_-_40379205_40379215	1.65276	LHX3,4.p2	BC132536|Crisp3|11572|cysteine-rich secretory protein 3	BC132538|Crisp3|11572|cysteine-rich secretory protein 3	L05560|Crisp3|11572|cysteine-rich secretory protein 3	NM_009639|Crisp3|11572|cysteine-rich secretory protein 3	BC114345|Crisp3|11572|cysteine-rich secretory protein 3	M92850|Crisp3|11572|cysteine-rich secretory protein 3	BC022573|Crisp3|11572|cysteine-rich secretory protein 3
mm9_v1_chr10_-_5734448_5734544	1.64696	LHX3,4.p2	EU791538|Esr1|13982|estrogen receptor 1 (alpha)	AK036627|Esr1|13982|estrogen receptor 1 (alpha)	NM_007956|Esr1|13982|estrogen receptor 1 (alpha)	AJ272164|Esr1|13982|estrogen receptor 1 (alpha)	AK039911|Esr1|13982|estrogen receptor 1 (alpha)	AK041525|Esr1|13982|estrogen receptor 1 (alpha)	AK033270|Esr1|13982|estrogen receptor 1 (alpha)
mm9_v1_chr7_-_87550315_87550316	1.64575	LHX3,4.p2	AK020294|Furin|18550|furin (paired basic amino acid cleaving enzyme)	NM_001081454|Furin|18550|furin (paired basic amino acid cleaving enzyme)
mm9_v1_chr19_-_39815529_39815559	1.64365	LHX3,4.p2	BC019468|Cyp2c68|433247|cytochrome P450, family 2, subfamily c, polypeptide 68
mm9_v1_chr1_-_142079842_142079987	1.62465	LHX3,4.p2	M31979|Cfh|12628|complement component factor h	BC066092|Cfh|12628|complement component factor h	AK087707|Cfh|12628|complement component factor h	M12660|Cfh|12628|complement component factor h	AK052688|Cfh|12628|complement component factor h	NM_009888|Cfh|12628|complement component factor h
mm9_v1_chr6_+_135313010_135313048	1.61942	LHX3,4.p2	AK158369|Emp1|13730|epithelial membrane protein 1	AK159752|Emp1|13730|epithelial membrane protein 1	AK171061|Emp1|13730|epithelial membrane protein 1	AK172607|Emp1|13730|epithelial membrane protein 1	AK157366|Emp1|13730|epithelial membrane protein 1	AK171675|Emp1|13730|epithelial membrane protein 1	AK172705|Emp1|13730|epithelial membrane protein 1	BC034257|Emp1|13730|epithelial membrane protein 1
mm9_v1_chr15_-_82624668_82624681	1.60924	LHX3,4.p2	AK004915|Cyp2d26|76279|cytochrome P450, family 2, subfamily d, polypeptide 26	NM_029562|Cyp2d26|76279|cytochrome P450, family 2, subfamily d, polypeptide 26
mm9_v1_chr7_+_21947203_21947203	1.60276	LHX3,4.p2	NM_001166707|Vmn1r123|384695|vomeronasal 1 receptor 123
mm9_v1_chr7_+_23656242_23656242	1.60158	LHX3,4.p2	NM_001166724|Vmn1r160|620758|vomeronasal 1 receptor 160
mm9_v1_chr3_+_54165028_54165059	1.59509	LHX3,4.p2	NM_001198765|Postn|50706|periostin, osteoblast specific factor	NM_001198766|Postn|50706|periostin, osteoblast specific factor	NM_015784|Postn|50706|periostin, osteoblast specific factor	AK030756|Postn|50706|periostin, osteoblast specific factor	AK154049|Postn|50706|periostin, osteoblast specific factor	D13664|Postn|50706|periostin, osteoblast specific factor	BC007141|Postn|50706|periostin, osteoblast specific factor	AY651928|Postn|50706|periostin, osteoblast specific factor	BC031449|Postn|50706|periostin, osteoblast specific factor
mm9_v1_chr1_+_173770709_173770788	1.59036	LHX3,4.p2	NM_013489|Cd84|12523|CD84 antigen	AF043445|Cd84|12523|CD84 antigen	AK171067|Cd84|12523|CD84 antigen	AK037385|Cd84|12523|CD84 antigen	AK040694|Cd84|12523|CD84 antigen	AK156464|Cd84|12523|CD84 antigen	AK157075|Cd84|12523|CD84 antigen	BC140952|Cd84|12523|CD84 antigen	BC144736|Cd84|12523|CD84 antigen	AK154834|Cd84|12523|CD84 antigen	AB196812|Cd84|12523|CD84 antigen	AB196813|Cd84|12523|CD84 antigen	AB196814|Cd84|12523|CD84 antigen	AB196815|Cd84|12523|CD84 antigen
mm9_v1_chr9_+_44206258_44206258	1.58612	LHX3,4.p2	BC075655|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4	NM_008063|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm9_v1_chr7_+_21657274_21657274	1.58523	LHX3,4.p2	NM_001166744|Vmn1r116|667268|vomeronasal 1 receptor 116
mm9_v1_chr5_+_130263548_130263603	1.58223	LHX3,4.p2	AK199226|Gbas|14467|glioblastoma amplified sequence
mm9_v1_chrM_+_13320_13486	1.57469	LHX3,4.p2	
mm9_v1_chr3_+_125106995_125107008	1.57113	LHX3,4.p2	AF520870|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	AK140992|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	NM_022565|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
mm9_v1_chr1_+_169528706_169528770	1.5696	LHX3,4.p2	X66225|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr13_-_84204320_84204376	1.54844	LHX3,4.p2	AK082072|LOC553095|553095|hypothetical LOC553095
mm9_v1_chr5_-_66000506_66000618	1.53419	LHX3,4.p2	AK083707|B230308N11Rik|320060|RIKEN cDNA B230308N11 gene
mm9_v1_chr11_+_57985140_57985189	1.52427	LHX3,4.p2	NM_175001|Mrpl22|216767|mitochondrial ribosomal protein L22	AK077615|Mrpl22|216767|mitochondrial ribosomal protein L22	BC061191|Mrpl22|216767|mitochondrial ribosomal protein L22	AK086913|Mrpl22|216767|mitochondrial ribosomal protein L22	AK164417|Mrpl22|216767|mitochondrial ribosomal protein L22
mm9_v1_chr4_-_82151590_82151637	1.51391	LHX3,4.p2	Y07685|Nfib|18028|nuclear factor I/B
mm9_v1_chr7_-_110976438_110976438	1.5074	LHX3,4.p2	M10524|Hbb-b1|15129|hemoglobin, beta adult major chain
mm9_v1_chr11_+_58234612_58234640	1.4961	LHX3,4.p2	NM_027239|1810065E05Rik|69864|RIKEN cDNA 1810065E05 gene	BC026941|1810065E05Rik|69864|RIKEN cDNA 1810065E05 gene
mm9_v1_chr1_-_135557934_135557977	1.47734	LHX3,4.p2	AK148376|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK078105|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK145740|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK167700|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK041148|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK017663|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK035705|Zbed6|667118|zinc finger, BED domain containing 6	NM_144530|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr19_-_39815590_39815597	1.47487	LHX3,4.p2	NM_001039555|Cyp2c68|433247|cytochrome P450, family 2, subfamily c, polypeptide 68
mm9_v1_chr11_+_75578548_75578573	1.46649	LHX3,4.p2	AK204716|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK199717|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr10_+_32803288_32803366	1.45589	LHX3,4.p2	NM_029726|Trdn|76757|triadin	AK009816|Trdn|76757|triadin	AF223415|Trdn|76757|triadin	AF223416|Trdn|76757|triadin	BC034343|Trdn|76757|triadin	AF223417|Trdn|76757|triadin
mm9_v1_chr4_+_98697606_98697678	1.45381	LHX3,4.p2	AK149450|Angptl3|30924|angiopoietin-like 3	NM_013913|Angptl3|30924|angiopoietin-like 3	AK149555|Angptl3|30924|angiopoietin-like 3	BC019491|Angptl3|30924|angiopoietin-like 3	AF162224|Angptl3|30924|angiopoietin-like 3
mm9_v1_chr1_+_40497472_40497552	1.44976	LHX3,4.p2	NM_001025602|Il1rl1|17082|interleukin 1 receptor-like 1	D13695|Il1rl1|17082|interleukin 1 receptor-like 1
mm9_v1_chr1_-_82287990_82288082	1.44503	LHX3,4.p2	AK045317|Irs1|16367|insulin receptor substrate 1	NM_010570|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr6_-_50604391_50604439	1.43494	LHX3,4.p2	AB040289|Npvf|60531|neuropeptide VF precursor	AF330058|Npvf|60531|neuropeptide VF precursor	NM_021892|Npvf|60531|neuropeptide VF precursor	AK138200|Npvf|60531|neuropeptide VF precursor	BC116905|Npvf|60531|neuropeptide VF precursor	BC116907|Npvf|60531|neuropeptide VF precursor
mm9_v1_chr1_+_89470601_89470620	1.41556	LHX3,4.p2	AK145284|Neu2|23956|neuraminidase 2	NM_001160163|Neu2|23956|neuraminidase 2	NM_001160164|Neu2|23956|neuraminidase 2	FJ613504|Neu2|23956|neuraminidase 2
mm9_v1_chr14_+_79915429_79915530	1.40292	LHX3,4.p2	AK132456|Elf1|13709|E74-like factor 1	U19617|Elf1|13709|E74-like factor 1	AK156098|Elf1|13709|E74-like factor 1	BC037743|Elf1|13709|E74-like factor 1	BC027532|Elf1|13709|E74-like factor 1	BC053914|Elf1|13709|E74-like factor 1
mm9_v1_chr7_+_23840558_23840558	1.39905	LHX3,4.p2	NM_001166747|Vmn1r135|667404|vomeronasal 1 receptor 135	NM_001166755|Vmn1r163|667586|vomeronasal 1 receptor 163
mm9_v1_chr1_-_167090729_167090903	1.39749	LHX3,4.p2	AF345520|Tbx19|83993|T-box 19	BC120635|Tbx19|83993|T-box 19	BC137731|Tbx19|83993|T-box 19	AF348321|Tbx19|83993|T-box 19	AK038666|Tbx19|83993|T-box 19	NM_032005|Tbx19|83993|T-box 19
mm9_v1_chr2_-_58012447_58012596	1.39281	LHX3,4.p2	AF192525|Cytip|227929|cytohesin 1 interacting protein	AK089364|Cytip|227929|cytohesin 1 interacting protein	AF374273|Cytip|227929|cytohesin 1 interacting protein	AK152784|Cytip|227929|cytohesin 1 interacting protein	AK169575|Cytip|227929|cytohesin 1 interacting protein	BC007144|Cytip|227929|cytohesin 1 interacting protein	AK168343|Cytip|227929|cytohesin 1 interacting protein	AK037842|Cytip|227929|cytohesin 1 interacting protein	AK157859|Cytip|227929|cytohesin 1 interacting protein	AK166254|Cytip|227929|cytohesin 1 interacting protein	AK170544|Cytip|227929|cytohesin 1 interacting protein	AK170796|Cytip|227929|cytohesin 1 interacting protein	AK171467|Cytip|227929|cytohesin 1 interacting protein	AK172380|Cytip|227929|cytohesin 1 interacting protein	NM_139200|Cytip|227929|cytohesin 1 interacting protein	AK170301|Cytip|227929|cytohesin 1 interacting protein	AK172071|Cytip|227929|cytohesin 1 interacting protein	AK030882|Cytip|227929|cytohesin 1 interacting protein
mm9_v1_chr7_-_22104879_22104879	1.37718	LHX3,4.p2	NM_001166726|Vmn1r127|621561|vomeronasal 1 receptor 127
mm9_v1_chr17_+_34729159_34729288	1.3708	LHX3,4.p2	AK159623|Pbx2|18515|pre B-cell leukemia transcription factor 2	BC010287|Pbx2|18515|pre B-cell leukemia transcription factor 2	BC062147|Pbx2|18515|pre B-cell leukemia transcription factor 2
mm9_v1_chr4_-_115840142_115840210	1.36392	LHX3,4.p2	BC003448|Tspan1|66805|tetraspanin 1	AK007428|Tspan1|66805|tetraspanin 1	AK078869|Tspan1|66805|tetraspanin 1	AK162521|Tspan1|66805|tetraspanin 1	NM_133681|Tspan1|66805|tetraspanin 1
mm9_v1_chr7_+_20779058_20779058	1.35045	LHX3,4.p2	NM_001166750|Vmn1r143|667469|vomeronasal 1 receptor 143	NM_001167538|Vmn1r95|100312475|vomeronasal 1 receptor, 95
mm9_v1_chr8_-_8667108_8667134	1.3372	LHX3,4.p2	AK034581|Arglu1|234023|arginine and glutamate rich 1
mm9_v1_chr13_-_102462584_102462601	1.33146	LHX3,4.p2	AK046259|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	NM_001024955|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chr7_-_23804941_23804941	1.32712	LHX3,4.p2	NM_001167166|Gm4216|100043083|predicted gene 4216	NM_001167167|Gm4177|100043025|predicted gene 4177
mm9_v1_chr7_-_22581746_22581746	1.32712	LHX3,4.p2	NM_001167166|Gm4216|100043083|predicted gene 4216	NM_001167167|Gm4177|100043025|predicted gene 4177
mm9_v1_chr11_+_79153388_79153393	1.32353	LHX3,4.p2	AK085050|Nf1|18015|neurofibromatosis 1	NM_010897|Nf1|18015|neurofibromatosis 1
mm9_v1_chr16_-_92400226_92400324	1.32298	LHX3,4.p2	AF237790|Rcan1|54720|regulator of calcineurin 1	AF263239|Rcan1|54720|regulator of calcineurin 1	BC013551|Rcan1|54720|regulator of calcineurin 1	AK077283|Rcan1|54720|regulator of calcineurin 1	NM_019466|Rcan1|54720|regulator of calcineurin 1
mm9_v1_chr2_+_122607734_122607734	1.31729	LHX3,4.p2	AF174535|Sqrdl|59010|sulfide quinone reductase-like (yeast)	NM_021507|Sqrdl|59010|sulfide quinone reductase-like (yeast)
mm9_v1_chr9_-_32348863_32349036	1.30672	LHX3,4.p2	BC138791|Fli1|14247|Friend leukemia integration 1	BC138792|Fli1|14247|Friend leukemia integration 1	AK042111|Fli1|14247|Friend leukemia integration 1	AK154714|Fli1|14247|Friend leukemia integration 1	NM_008026|Fli1|14247|Friend leukemia integration 1	AK036655|Fli1|14247|Friend leukemia integration 1	X59421|Fli1|14247|Friend leukemia integration 1
mm9_v1_chr1_-_45559866_45559893	1.30636	LHX3,4.p2	BC055077|Col5a2|12832|collagen, type V, alpha 2
mm9_v1_chr7_+_22974395_22974395	1.30357	LHX3,4.p2	NM_001166750|Vmn1r143|667469|vomeronasal 1 receptor 143	NM_001167538|Vmn1r95|100312475|vomeronasal 1 receptor, 95
mm9_v1_chr19_-_34952377_34952406	1.28429	LHX3,4.p2	AF200357|Pank1|75735|pantothenate kinase 1	AK050222|Pank1|75735|pantothenate kinase 1	NM_023792|Pank1|75735|pantothenate kinase 1
mm9_v1_chr2_+_163332550_163332692	1.28223	LHX3,4.p2	AF015275|Hnf4a|15378|hepatic nuclear factor 4, alpha	FJ608819|Hnf4a|15378|hepatic nuclear factor 4, alpha	FJ608820|Hnf4a|15378|hepatic nuclear factor 4, alpha	FJ608821|Hnf4a|15378|hepatic nuclear factor 4, alpha	EF193391|Hnf4a|15378|hepatic nuclear factor 4, alpha
mm9_v1_chr7_+_21453935_21453935	1.27667	LHX3,4.p2	NM_001166753|Vmn1r155|667530|vomeronasal 1 receptor 155	NM_001166759|Vmn1r107|673977|vomeronasal 1 receptor 107	NM_001166846|Vmn1r110|100043561|vomeronasal 1 receptor 110	NM_001166848|Vmn1r130|100043596|vomeronasal 1 receptor 130	NM_001166849|Vmn1r137|100043614|vomeronasal 1 receptor 137	NM_001166850|Vmn1r165|100043667|vomeronasal 1 receptor 165
mm9_v1_chr7_+_23443036_23443036	1.27667	LHX3,4.p2	NM_001166753|Vmn1r155|667530|vomeronasal 1 receptor 155	NM_001166759|Vmn1r107|673977|vomeronasal 1 receptor 107	NM_001166846|Vmn1r110|100043561|vomeronasal 1 receptor 110	NM_001166848|Vmn1r130|100043596|vomeronasal 1 receptor 130	NM_001166849|Vmn1r137|100043614|vomeronasal 1 receptor 137	NM_001166850|Vmn1r165|100043667|vomeronasal 1 receptor 165
mm9_v1_chr7_+_21254266_21254266	1.27667	LHX3,4.p2	NM_001166753|Vmn1r155|667530|vomeronasal 1 receptor 155	NM_001166759|Vmn1r107|673977|vomeronasal 1 receptor 107	NM_001166846|Vmn1r110|100043561|vomeronasal 1 receptor 110	NM_001166848|Vmn1r130|100043596|vomeronasal 1 receptor 130	NM_001166849|Vmn1r137|100043614|vomeronasal 1 receptor 137	NM_001166850|Vmn1r165|100043667|vomeronasal 1 receptor 165
mm9_v1_chr7_+_138712015_138712162	1.27429	LHX3,4.p2	AK039977|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	AK079742|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)
mm9_v1_chr7_+_24002350_24002350	1.27347	LHX3,4.p2	BC154405|Vmn1r178|232959|vomeronasal 1 receptor 178	NM_001166753|Vmn1r155|667530|vomeronasal 1 receptor 155	NM_001166759|Vmn1r107|673977|vomeronasal 1 receptor 107	NM_001166846|Vmn1r110|100043561|vomeronasal 1 receptor 110	NM_001166848|Vmn1r130|100043596|vomeronasal 1 receptor 130	NM_001166849|Vmn1r137|100043614|vomeronasal 1 receptor 137	NM_001166850|Vmn1r165|100043667|vomeronasal 1 receptor 165
mm9_v1_chr7_+_22779605_22779605	1.27347	LHX3,4.p2	NM_001166753|Vmn1r155|667530|vomeronasal 1 receptor 155	NM_001166759|Vmn1r107|673977|vomeronasal 1 receptor 107	NM_001166846|Vmn1r110|100043561|vomeronasal 1 receptor 110	NM_001166848|Vmn1r130|100043596|vomeronasal 1 receptor 130	NM_001166849|Vmn1r137|100043614|vomeronasal 1 receptor 137	NM_001166850|Vmn1r165|100043667|vomeronasal 1 receptor 165
mm9_v1_chrX_+_154137049_154137065	1.25494	LHX3,4.p2	AJ245772|Smpx|66106|small muscle protein, X-linked	NM_025357|Smpx|66106|small muscle protein, X-linked	AK009857|Smpx|66106|small muscle protein, X-linked	AK010172|Smpx|66106|small muscle protein, X-linked	AY026524|Smpx|66106|small muscle protein, X-linked	AK003105|Smpx|66106|small muscle protein, X-linked	AF364070|Smpx|66106|small muscle protein, X-linked
mm9_v1_chr6_-_130143018_130143129	1.2545	LHX3,4.p2	BC116376|Klra6|16637|killer cell lectin-like receptor, subfamily A, member 6	BC131790|Klra5|16636|killer cell lectin-like receptor, subfamily A, member 5	AF237686|Klra9|16640|killer cell lectin-like receptor subfamily A, member 9	NM_010651|Klra9|16640|killer cell lectin-like receptor subfamily A, member 9	U49865|Klra9|16640|killer cell lectin-like receptor subfamily A, member 9	U49866|Klra9|16640|killer cell lectin-like receptor subfamily A, member 9	U49867|Klra9|16640|killer cell lectin-like receptor subfamily A, member 9
mm9_v1_chr3_+_95354031_95354039	1.25127	LHX3,4.p2	AJ223208|Ctss|13040|cathepsin S
mm9_v1_chr13_-_104554635_104554661	1.25044	LHX3,4.p2	AK081447|Srsf12|218543|serine/arginine-rich splicing factor 12	AK037115|Srsf12|218543|serine/arginine-rich splicing factor 12	AK033354|Srsf12|218543|serine/arginine-rich splicing factor 12	NM_172592|Srsf12|218543|serine/arginine-rich splicing factor 12
mm9_v1_chr16_+_20692792_20692908	1.2454	LHX3,4.p2	
mm9_v1_chr9_+_96159666_96159703	1.2399	LHX3,4.p2	NM_001184710|Tfdp2|211586|transcription factor Dp 2	NM_001184711|Tfdp2|211586|transcription factor Dp 2	AK158829|Tfdp2|211586|transcription factor Dp 2	BC092230|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr12_-_102988510_102988573	1.23746	LHX3,4.p2	AK203388|Fbln5|23876|fibulin 5	AK212054|Fbln5|23876|fibulin 5
mm9_v1_chr7_-_53086135_53086313	1.23659	LHX3,4.p2	BC008121|Grwd1|101612|glutamate-rich WD repeat containing 1	BC083143|Grwd1|101612|glutamate-rich WD repeat containing 1	BC028896|Grwd1|101612|glutamate-rich WD repeat containing 1	NM_153419|Grwd1|101612|glutamate-rich WD repeat containing 1	AK077611|Grwd1|101612|glutamate-rich WD repeat containing 1	AB001539|Grwd1|101612|glutamate-rich WD repeat containing 1
mm9_v1_chr6_+_13821522_13821573	1.23464	LHX3,4.p2	AK143417|1110019D14Rik|76311|RIKEN cDNA 1110019D14 gene	AK003812|1110019D14Rik|76311|RIKEN cDNA 1110019D14 gene
mm9_v1_chr11_-_46503858_46503858	1.23401	LHX3,4.p2	AB009015|Timd2|171284|T-cell immunoglobulin and mucin domain containing 2	NM_001161356|Timd2|171284|T-cell immunoglobulin and mucin domain containing 2
mm9_v1_chr2_-_6110280_6110381	1.22938	LHX3,4.p2	AK209830|Echdc3|67856|enoyl Coenzyme A hydratase domain containing 3
mm9_v1_chr8_+_131238027_131238047	1.22937	LHX3,4.p2	AK141253|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chr1_+_59543450_59543567	1.22839	LHX3,4.p2	
mm9_v1_chr10_+_127335573_127335617	1.22738	LHX3,4.p2	AK037184|Sdr9c7|70061|4short chain dehydrogenase/reductase family 9C, member 7	BC064820|Sdr9c7|70061|4short chain dehydrogenase/reductase family 9C, member 7	NM_027301|Sdr9c7|70061|4short chain dehydrogenase/reductase family 9C, member 7	AY044433|Sdr9c7|70061|4short chain dehydrogenase/reductase family 9C, member 7
mm9_v1_chr16_-_44016471_44016548	1.214	LHX3,4.p2	BC037472|Gramd1c|207798|GRAM domain containing 1C	AK129016|Gramd1c|207798|GRAM domain containing 1C	AK035257|Gramd1c|207798|GRAM domain containing 1C	NM_153528|Gramd1c|207798|GRAM domain containing 1C
mm9_v1_chr19_+_12873115_12873132	1.20306	LHX3,4.p2	BC026563|Lpxn|107321|leupaxin
mm9_v1_chr7_-_110976439_110976454	1.19812	LHX3,4.p2	AK002258|Hbb-b1|15129|hemoglobin, beta adult major chain	AK003096|Hbb-b1|15129|hemoglobin, beta adult major chain	AK003472|Hbb-b1|15129|hemoglobin, beta adult major chain	AK005442|Hbb-b1|15129|hemoglobin, beta adult major chain	AK010902|Hbb-b1|15129|hemoglobin, beta adult major chain	AK010980|Hbb-b1|15129|hemoglobin, beta adult major chain	AK010981|Hbb-b1|15129|hemoglobin, beta adult major chain	AK010991|Hbb-b1|15129|hemoglobin, beta adult major chain	AK010993|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011006|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011013|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011016|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011027|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011067|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011077|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011083|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011102|Hbb-b1|15129|hemoglobin, beta adult major chain	AK027904|Hbb-b1|15129|hemoglobin, beta adult major chain	AK088149|Hbb-b1|15129|hemoglobin, beta adult major chain	AK133714|Hbb-b1|15129|hemoglobin, beta adult major chain	AK160629|Hbb-b1|15129|hemoglobin, beta adult major chain	AK161021|Hbb-b1|15129|hemoglobin, beta adult major chain	AK165490|Hbb-b1|15129|hemoglobin, beta adult major chain	AK168562|Hbb-b1|15129|hemoglobin, beta adult major chain	AK168826|Hbb-b1|15129|hemoglobin, beta adult major chain	AK168846|Hbb-b1|15129|hemoglobin, beta adult major chain	AK005490|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011069|Hbb-b1|15129|hemoglobin, beta adult major chain	AK027903|Hbb-b1|15129|hemoglobin, beta adult major chain	AK147001|Hbb-b1|15129|hemoglobin, beta adult major chain
mm9_v1_chr11_-_48805585_48805759	1.18479	LHX3,4.p2	L38444|Tgtp2|100039796|T-cell specific GTPase 2	U15636|Tgtp1|21822|T-cell specific GTPase 1	AK145236|Gm12185|620913|predicted gene 12185	BC034256|Tgtp1|21822|T-cell specific GTPase 1	BC085259|Tgtp1|21822|T-cell specific GTPase 1	BC093522|Tgtp1|21822|T-cell specific GTPase 1	AK089836|Tgtp1|21822|T-cell specific GTPase 1	AK163978|Tgtp1|21822|T-cell specific GTPase 1	AK172473|Tgtp1|21822|T-cell specific GTPase 1	AK172580|Tgtp2|100039796|T-cell specific GTPase 2	NM_011579|Tgtp1|21822|T-cell specific GTPase 1	NM_001145164|Tgtp2|100039796|T-cell specific GTPase 2	AK166353|Tgtp1|21822|T-cell specific GTPase 1
mm9_v1_chr18_-_57134974_57135060	1.17573	LHX3,4.p2	BC116244|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	BC116245|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	BC127172|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	AK021208|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	AK053997|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	AK140255|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	NM_029909|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene
mm9_v1_chr4_+_95224197_95224229	1.17489	LHX3,4.p2	NM_001113412|Fggy|75578|FGGY carbohydrate kinase domain containing	AK138439|Fggy|75578|FGGY carbohydrate kinase domain containing	AK082737|Fggy|75578|FGGY carbohydrate kinase domain containing
mm9_v1_chr6_-_51413182_51413233	1.1677	LHX3,4.p2	AK049735|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr9_-_85637765_85637765	1.13494	LHX3,4.p2	NM_001081282|Ibtk|108837|inhibitor of Bruton agammaglobulinemia tyrosine kinase
mm9_v1_chr8_-_87186691_87186755	1.13426	LHX3,4.p2	AK172332|Ier2|15936|immediate early response 2	BC002067|Ier2|15936|immediate early response 2	AK170433|Ier2|15936|immediate early response 2	AK032692|Ier2|15936|immediate early response 2	AK144601|Ier2|15936|immediate early response 2	AK150860|Ier2|15936|immediate early response 2	AK152747|Ier2|15936|immediate early response 2	M31042|Ier2|15936|immediate early response 2	NM_010499|Ier2|15936|immediate early response 2	M59821|Ier2|15936|immediate early response 2
mm9_v1_chr5_+_90919739_90919752	1.13197	LHX3,4.p2	NM_007423|Afp|11576|alpha fetoprotein
mm9_v1_chr17_+_45704145_45704512	1.13125	LHX3,4.p2	AK211181|Slc35b2|73836|solute carrier family 35, member B2	AK212100|Slc35b2|73836|solute carrier family 35, member B2	AK207266|Slc35b2|73836|solute carrier family 35, member B2	AK212091|Slc35b2|73836|solute carrier family 35, member B2	AK214463|Slc35b2|73836|solute carrier family 35, member B2
mm9_v1_chr14_+_80400057_80400108	1.12352	LHX3,4.p2	BC141127|Olfm4|380924|olfactomedin 4	BC145436|Olfm4|380924|olfactomedin 4	AK133536|Olfm4|380924|olfactomedin 4	NM_001030294|Olfm4|380924|olfactomedin 4
mm9_v1_chr6_+_135312948_135312972	1.12105	LHX3,4.p2	BC046299|Emp1|13730|epithelial membrane protein 1	NM_010128|Emp1|13730|epithelial membrane protein 1	X98403|Emp1|13730|epithelial membrane protein 1
mm9_v1_chr5_-_88128419_88128445	1.11312	LHX3,4.p2	BC019114|Csn2|12991|casein beta	BC013332|Csn2|12991|casein beta	BC092098|Csn2|12991|casein beta	BC020356|Csn2|12991|casein beta	BC050270|Csn2|12991|casein beta	BC020383|Csn2|12991|casein beta	BC021153|Csn2|12991|casein beta	BC057671|Csn2|12991|casein beta	BC080709|Csn2|12991|casein beta	AK164792|Csn2|12991|casein beta	AK164793|Csn2|12991|casein beta	AK085729|Csn2|12991|casein beta	AK021324|Csn2|12991|casein beta	AK021328|Csn2|12991|casein beta	AK052803|Csn2|12991|casein beta	AK052805|Csn2|12991|casein beta	AK052822|Csn2|12991|casein beta	AK085678|Csn2|12991|casein beta	AK085694|Csn2|12991|casein beta	AK085698|Csn2|12991|casein beta	AK085756|Csn2|12991|casein beta	AK142616|Csn2|12991|casein beta	AK142620|Csn2|12991|casein beta	AK142631|Csn2|12991|casein beta	AK142635|Csn2|12991|casein beta	AK164747|Csn2|12991|casein beta	AK164761|Csn2|12991|casein beta	AK164791|Csn2|12991|casein beta	AK164794|Csn2|12991|casein beta	NM_009972|Csn2|12991|casein beta	X04490|Csn2|12991|casein beta
mm9_v1_chr18_-_84849981_84849981	1.11104	LHX3,4.p2	AK168856|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)
mm9_v1_chr8_+_86247034_86247066	1.10126	LHX3,4.p2	
mm9_v1_chr19_-_41288465_41288553	1.09844	LHX3,4.p2	AK077835|Tm9sf3|107358|transmembrane 9 superfamily member 3
mm9_v1_chr14_-_21553783_21553783	1.09841	LHX3,4.p2	AF520868|Ndst2|17423|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	NM_010811|Ndst2|17423|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2
mm9_v1_chr1_-_173165051_173165079	1.09008	LHX3,4.p2	
mm9_v1_chr1_-_152011986_152012077	1.08701	LHX3,4.p2	
mm9_v1_chr3_+_32335072_32335127	1.05981	LHX3,4.p2	BC089038|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	NM_008839|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	BC130228|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	U03279|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm9_v1_chr7_+_22399110_22399110	1.05943	LHX3,4.p2	NM_001166748|Vmn1r139|667444|vomeronasal 1 receptor 139
mm9_v1_chr7_+_22881885_22881885	1.05943	LHX3,4.p2	NM_001166748|Vmn1r139|667444|vomeronasal 1 receptor 139
mm9_v1_chr7_+_21556203_21556203	1.05943	LHX3,4.p2	NM_001166847|Vmn1r112|100043569|vomeronasal 1 receptor 112
mm9_v1_chr7_+_23546715_23546715	1.05943	LHX3,4.p2	NM_001166754|Vmn1r157|667551|vomeronasal 1 receptor 157	NM_001166845|Vmn1r109|100043559|vomeronasal 1 receptor 109
mm9_v1_chr8_+_48907496_48907496	1.05017	LHX3,4.p2	NM_001111318|Cldn24|100039801|claudin 22-like
mm9_v1_chr18_-_36886375_36886388	1.04857	LHX3,4.p2	AK149744|Cd14|12475|CD14 antigen
mm9_v1_chr1_-_135557925_135557932	1.04792	LHX3,4.p2	BC066163|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr8_-_5105158_5105231	1.04666	LHX3,4.p2	D87059|Slc10a2|20494|solute carrier family 10, member 2	BC120703|Slc10a2|20494|solute carrier family 10, member 2	BC125290|Slc10a2|20494|solute carrier family 10, member 2	AB002693|Slc10a2|20494|solute carrier family 10, member 2	AY529655|Slc10a2|20494|solute carrier family 10, member 2	AY529656|Slc10a2|20494|solute carrier family 10, member 2	NM_011388|Slc10a2|20494|solute carrier family 10, member 2
mm9_v1_chr2_-_181406313_181406348	1.0446	LHX3,4.p2	L35032|Sox18|20672|SRY-box containing gene 18	BC006612|Sox18|20672|SRY-box containing gene 18	AK144281|Sox18|20672|SRY-box containing gene 18	NM_009236|Sox18|20672|SRY-box containing gene 18
mm9_v1_chr4_+_8617550_8617602	1.03839	LHX3,4.p2	AK171857|Chd7|320790|chromodomain helicase DNA binding protein 7	AK172025|Chd7|320790|chromodomain helicase DNA binding protein 7
mm9_v1_chr19_+_12873063_12873098	1.0379	LHX3,4.p2	AK039922|Lpxn|107321|leupaxin	AB071194|Lpxn|107321|leupaxin	NM_134152|Lpxn|107321|leupaxin
mm9_v1_chr3_-_73512139_73512177	1.03703	LHX3,4.p2	AK052200|Bche|12038|butyrylcholinesterase	BC099977|Bche|12038|butyrylcholinesterase
mm9_v1_chr3_+_59885782_59885794	1.03414	LHX3,4.p2	AF295367|Sucnr1|84112|succinate receptor 1	AK080866|Sucnr1|84112|succinate receptor 1	NM_032400|Sucnr1|84112|succinate receptor 1
mm9_v1_chr5_+_104631633_104631713	1.03319	LHX3,4.p2	AK132177|Dmp1|13406|dentin matrix protein 1	AK157973|Dmp1|13406|dentin matrix protein 1	NM_016779|Dmp1|13406|dentin matrix protein 1	U65020|Dmp1|13406|dentin matrix protein 1	BC113753|Dmp1|13406|dentin matrix protein 1
mm9_v1_chrX_+_132758579_132758588	1.03236	LHX3,4.p2	NM_001127169|Tceal7|100040972|transcription elongation factor A (SII)-like 7	AK003800|Tceal7|100040972|transcription elongation factor A (SII)-like 7
mm9_v1_chr7_+_20686506_20686506	1.03034	LHX3,4.p2	NM_001166736|Vmn1r91|667067|vomeronasal 1 receptor 91
mm9_v1_chr9_+_118972535_118972604	1.02602	LHX3,4.p2	BC022664|Vill|22351|villin-like	AK166652|Vill|22351|villin-like
mm9_v1_chr6_-_24118065_24118091	1.01872	LHX3,4.p2	BC040789|Slc13a1|55961|solute carrier family 13 (sodium/sulfate symporters), member 1	BC049981|Slc13a1|55961|solute carrier family 13 (sodium/sulfate symporters), member 1	AK019876|Slc13a1|55961|solute carrier family 13 (sodium/sulfate symporters), member 1	AF199365|Slc13a1|55961|solute carrier family 13 (sodium/sulfate symporters), member 1	AF199366|Slc13a1|55961|solute carrier family 13 (sodium/sulfate symporters), member 1	AK128899|Slc13a1|55961|solute carrier family 13 (sodium/sulfate symporters), member 1	NM_019481|Slc13a1|55961|solute carrier family 13 (sodium/sulfate symporters), member 1
mm9_v1_chr1_-_69732373_69732533	1.00984	LHX3,4.p2	BC138606|Ikzf2|22779|IKAROS family zinc finger 2	BC138608|Ikzf2|22779|IKAROS family zinc finger 2	AK047925|Ikzf2|22779|IKAROS family zinc finger 2	AF044257|Ikzf2|22779|IKAROS family zinc finger 2	NM_011770|Ikzf2|22779|IKAROS family zinc finger 2
mm9_v1_chr3_-_102586596_102586636	1.00774	LHX3,4.p2	M35719|Tshb|22094|thyroid stimulating hormone, beta subunit	M35720|Tshb|22094|thyroid stimulating hormone, beta subunit	M35721|Tshb|22094|thyroid stimulating hormone, beta subunit	M35723|Tshb|22094|thyroid stimulating hormone, beta subunit	NM_001165939|Tshb|22094|thyroid stimulating hormone, beta subunit	NM_001165940|Tshb|22094|thyroid stimulating hormone, beta subunit	NM_009432|Tshb|22094|thyroid stimulating hormone, beta subunit
mm9_v1_chr13_+_63116293_63116526	1.00203	LHX3,4.p2	AK141931|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene	NM_028079|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene	BC141279|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene	AJ810420|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene
mm9_v1_chr8_-_3467624_3467679	0.99244	LHX3,4.p2	BC062135|Pex11c|69129|peroxisomal biogenesis factor 11 gamma	AK007848|Pex11c|69129|peroxisomal biogenesis factor 11 gamma	AK007582|Pex11c|69129|peroxisomal biogenesis factor 11 gamma	NM_026951|Pex11c|69129|peroxisomal biogenesis factor 11 gamma	AK165461|Pex11c|69129|peroxisomal biogenesis factor 11 gamma	BC024096|Pex11c|69129|peroxisomal biogenesis factor 11 gamma
mm9_v1_chr18_-_36886307_36886353	0.991306	LHX3,4.p2	BC057889|Cd14|12475|CD14 antigen	NM_009841|Cd14|12475|CD14 antigen
mm9_v1_chr9_+_44884261_44884391	0.986307	LHX3,4.p2	
mm9_v1_chr15_-_82624638_82624663	0.979326	LHX3,4.p2	BC023241|Cyp2d26|76279|cytochrome P450, family 2, subfamily d, polypeptide 26
mm9_v1_chr5_+_90919768_90919776	0.962485	LHX3,4.p2	BC066206|Afp|11576|alpha fetoprotein
mm9_v1_chr1_+_21230664_21230669	0.95972	LHX3,4.p2	NM_001077353|Gsta3|14859|glutathione S-transferase, alpha 3	NM_010356|Gsta3|14859|glutathione S-transferase, alpha 3
mm9_v1_chr19_-_21028691_21028691	0.955261	LHX3,4.p2	AF417579|Tmc1|13409|transmembrane channel-like gene family 1	NM_028953|Tmc1|13409|transmembrane channel-like gene family 1
mm9_v1_chr16_-_97985323_97985396	0.953153	LHX3,4.p2	BC057871|Ripk4|72388|receptor-interacting serine-threonine kinase 4	AK145203|Ripk4|72388|receptor-interacting serine-threonine kinase 4	AF302127|Ripk4|72388|receptor-interacting serine-threonine kinase 4	NM_023663|Ripk4|72388|receptor-interacting serine-threonine kinase 4	AK010133|Ripk4|72388|receptor-interacting serine-threonine kinase 4
mm9_v1_chr11_+_93905501_93905545	0.950408	LHX3,4.p2	AK014060|Spag9|70834|sperm associated antigen 9	AK079365|Spag9|70834|sperm associated antigen 9	NM_001025428|Spag9|70834|sperm associated antigen 9	NM_001025429|Spag9|70834|sperm associated antigen 9	NM_001025430|Spag9|70834|sperm associated antigen 9	AK172961|Spag9|70834|sperm associated antigen 9
mm9_v1_chr13_+_113657736_113657889	0.943007	LHX3,4.p2	
mm9_v1_chr3_-_116671573_116671671	0.941794	LHX3,4.p2	AF263246|Palmd|114301|palmdelphin	AL391037|Palmd|114301|palmdelphin	AJ312215|Palmd|114301|palmdelphin	AK171869|Palmd|114301|palmdelphin	BC010193|Palmd|114301|palmdelphin	AK043695|Palmd|114301|palmdelphin	AK014531|Palmd|114301|palmdelphin
mm9_v1_chr15_+_34044603_34044618	0.939471	LHX3,4.p2	AK218970|Mtdh|67154|metadherin
mm9_v1_chr15_+_102840224_102840225	0.933191	LHX3,4.p2	AK050798|Hoxc6|15425|homeobox C6
mm9_v1_chr15_-_99609351_99609491	0.932112	LHX3,4.p2	AK003890|Lima1|65970|LIM domain and actin binding 1
mm9_v1_chr17_-_46168654_46168719	0.926011	LHX3,4.p2	AY707864|Vegfa|22339|vascular endothelial growth factor A	AY750956|Vegfa|22339|vascular endothelial growth factor A	AY750957|Vegfa|22339|vascular endothelial growth factor A	EF028705|Vegfa|22339|vascular endothelial growth factor A	BC061468|Vegfa|22339|vascular endothelial growth factor A
mm9_v1_chr11_+_84008939_84008965	0.925969	LHX3,4.p2	NM_133360|Acaca|107476|acetyl-Coenzyme A carboxylase alpha	AY451393|Acaca|107476|acetyl-Coenzyme A carboxylase alpha
mm9_v1_chr8_-_3154851_3154868	0.924536	LHX3,4.p2	AK085344|Insr|16337|insulin receptor
mm9_v1_chr4_-_14548903_14548926	0.922729	LHX3,4.p2	BC026928|Slc26a7|208890|solute carrier family 26, member 7	AK054327|Slc26a7|208890|solute carrier family 26, member 7	NM_145947|Slc26a7|208890|solute carrier family 26, member 7
mm9_v1_chr3_-_116671720_116671775	0.922684	LHX3,4.p2	AK136939|Palmd|114301|palmdelphin
mm9_v1_chr17_-_36248574_36248638	0.917982	LHX3,4.p2	AF100703|H2-T23|15040|histocompatibility 2, T region locus 23	AF041855|H2-T23|15040|histocompatibility 2, T region locus 23	L00606|H2-T23|15040|histocompatibility 2, T region locus 23	BC005648|H2-T23|15040|histocompatibility 2, T region locus 23	AK083376|C920025E04Rik|667803|RIKEN cDNA C920025E04 gene	AK083387|C920025E04Rik|667803|RIKEN cDNA C920025E04 gene
mm9_v1_chr5_-_92776027_92776042	0.902473	LHX3,4.p2	AK150987|Cxcl10|15945|chemokine (C-X-C motif) ligand 10
mm9_v1_chr13_+_49703402_49703439	0.893441	LHX3,4.p2	AK028300|Ogn|18295|osteoglycin	AK160760|Ogn|18295|osteoglycin	AK053650|Ogn|18295|osteoglycin	NM_008760|Ogn|18295|osteoglycin
mm9_v1_chr4_+_116269256_116269264	0.892978	LHX3,4.p2	AK076542|Ccdc17|622665|coiled-coil domain containing 17
mm9_v1_chr7_+_21357946_21357946	0.889805	LHX3,4.p2	NM_001166754|Vmn1r157|667551|vomeronasal 1 receptor 157	NM_001166845|Vmn1r109|100043559|vomeronasal 1 receptor 109
mm9_v1_chr7_-_53927906_53927906	0.88429	LHX3,4.p2	BC072582|Tph1|21990|tryptophan hydroxylase 1	NM_009414|Tph1|21990|tryptophan hydroxylase 1
mm9_v1_chr15_-_96861590_96861647	0.882729	LHX3,4.p2	BC024072|Slc38a4|69354|solute carrier family 38, member 4	BC024123|Slc38a4|69354|solute carrier family 38, member 4	AB055004|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr4_-_104548965_104549005	0.881622	LHX3,4.p2	AB077296|C8a|230558|complement component 8, alpha polypeptide	AB077297|C8a|230558|complement component 8, alpha polypeptide	AB077298|C8a|230558|complement component 8, alpha polypeptide	BC027748|C8a|230558|complement component 8, alpha polypeptide	AK090245|C8a|230558|complement component 8, alpha polypeptide	AB077295|C8a|230558|complement component 8, alpha polypeptide	NM_146148|C8a|230558|complement component 8, alpha polypeptide
mm9_v1_chr3_-_116671869_116671896	0.880024	LHX3,4.p2	NM_023245|Palmd|114301|palmdelphin
mm9_v1_chr8_+_89240252_89240401	0.878757	LHX3,4.p2	AK197630|Lonp2|66887|lon peptidase 2, peroxisomal
mm9_v1_chr10_+_89280918_89280988	0.877752	LHX3,4.p2	AK079985|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK046432|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK008586|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like
mm9_v1_chr16_+_36081360_36081360	0.875931	LHX3,4.p2	NM_001159422|Ccdc58|381045|coiled-coil domain containing 58
mm9_v1_chr7_+_29222465_29222512	0.874091	LHX3,4.p2	AK002834|Gmfg|63986|glia maturation factor, gamma	AK014214|Gmfg|63986|glia maturation factor, gamma	NM_022024|Gmfg|63986|glia maturation factor, gamma	AF297221|Gmfg|63986|glia maturation factor, gamma	BC011488|Gmfg|63986|glia maturation factor, gamma
mm9_v1_chr4_-_134081867_134082196	0.872672	LHX3,4.p2	AK196748|Fam54b|76824|family with sequence similarity 54, member B	AK205711|Fam54b|76824|family with sequence similarity 54, member B	AK194688|Fam54b|76824|family with sequence similarity 54, member B
mm9_v1_chr5_+_88095232_88095257	0.866404	LHX3,4.p2	AK052808|Csn1s1|12990|casein alpha s1	AK085690|Csn1s1|12990|casein alpha s1	BC003859|Csn1s1|12990|casein alpha s1	BC006024|Csn1s1|12990|casein alpha s1	BC007192|Csn1s1|12990|casein alpha s1	BC008278|Csn1s1|12990|casein alpha s1	BC040246|Csn1s1|12990|casein alpha s1	NM_007784|Csn1s1|12990|casein alpha s1	BC002101|Csn1s1|12990|casein alpha s1
mm9_v1_chr2_-_4984983_4985031	0.861182	LHX3,4.p2	BC061185|Optn|71648|optineurin	NM_181848|Optn|71648|optineurin
mm9_v1_chr6_-_124181801_124181801	0.859451	LHX3,4.p2	NM_001104642|Vmn2r27|232367|vomeronasal 2, receptor27
mm9_v1_chr14_+_56384798_56384867	0.856685	LHX3,4.p2	AK155181|Ltb4r1|16995|leukotriene B4 receptor 1	NM_008519|Ltb4r1|16995|leukotriene B4 receptor 1	AF044030|Ltb4r1|16995|leukotriene B4 receptor 1	AK010895|Ltb4r1|16995|leukotriene B4 receptor 1	AF110104|Ltb4r1|16995|leukotriene B4 receptor 1	BC064063|Ltb4r1|16995|leukotriene B4 receptor 1
mm9_v1_chr3_-_20174589_20174650	0.853701	LHX3,4.p2	AK003061|Cpb1|76703|carboxypeptidase B1 (tissue)	BC138759|Cpb1|76703|carboxypeptidase B1 (tissue)	BC138762|Cpb1|76703|carboxypeptidase B1 (tissue)	NM_029706|Cpb1|76703|carboxypeptidase B1 (tissue)
mm9_v1_chr8_-_8666771_8666782	0.852249	LHX3,4.p2	AK038412|Arglu1|234023|arginine and glutamate rich 1
mm9_v1_chr11_-_76592473_76592508	0.846435	LHX3,4.p2	AK052903|Cpd|12874|carboxypeptidase D
mm9_v1_chr6_+_128995918_128995965	0.840969	LHX3,4.p2	AK041601|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	NM_153094|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	AK154278|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	BC107177|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	BC107178|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	BC127141|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	BC127142|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	AK170023|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	AY029597|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	DQ237931|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F
mm9_v1_chr5_-_92378648_92378678	0.839632	LHX3,4.p2	AK007543|Rchy1|68098|ring finger and CHY zinc finger domain containing 1
mm9_v1_chrX_+_12870471_12870561	0.837467	LHX3,4.p2	AK002917|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
mm9_v1_chr5_+_90919758_90919765	0.83193	LHX3,4.p2	AK075972|Afp|11576|alpha fetoprotein	AK076197|Afp|11576|alpha fetoprotein	AK146513|Afp|11576|alpha fetoprotein	AK146524|Afp|11576|alpha fetoprotein	AK168426|Afp|11576|alpha fetoprotein	AK168574|Afp|11576|alpha fetoprotein	AK168751|Afp|11576|alpha fetoprotein	AK169046|Afp|11576|alpha fetoprotein	AK169054|Afp|11576|alpha fetoprotein	AK010934|Afp|11576|alpha fetoprotein	AK076053|Afp|11576|alpha fetoprotein	AK145975|Afp|11576|alpha fetoprotein	AK168576|Afp|11576|alpha fetoprotein	AK168883|Afp|11576|alpha fetoprotein	AK169147|Afp|11576|alpha fetoprotein	AK167549|Afp|11576|alpha fetoprotein	V00743|Afp|11576|alpha fetoprotein
mm9_v1_chr15_-_42508294_42508522	0.831792	LHX3,4.p2	U83509|Angpt1|11600|angiopoietin 1	BC067410|Angpt1|11600|angiopoietin 1	NM_009640|Angpt1|11600|angiopoietin 1	AK172868|Angpt1|11600|angiopoietin 1	AK012027|Angpt1|11600|angiopoietin 1	AK088439|Angpt1|11600|angiopoietin 1
mm9_v1_chr3_+_122122640_122122910	0.82672	LHX3,4.p2	AK158241|Bcar3|29815|breast cancer anti-estrogen resistance 3	NM_013867|Bcar3|29815|breast cancer anti-estrogen resistance 3	BC023930|Bcar3|29815|breast cancer anti-estrogen resistance 3	AF179566|Bcar3|29815|breast cancer anti-estrogen resistance 3	AK167578|Bcar3|29815|breast cancer anti-estrogen resistance 3	AK143894|Bcar3|29815|breast cancer anti-estrogen resistance 3
mm9_v1_chr9_+_65246294_65246323	0.824235	LHX3,4.p2	NM_001033158|Rasl12|70784|RAS-like, family 12	NM_001162923|Rasl12|70784|RAS-like, family 12	AK087136|Rasl12|70784|RAS-like, family 12	BC125036|Rasl12|70784|RAS-like, family 12
mm9_v1_chr15_+_31154178_31154275	0.823432	LHX3,4.p2	BC024876|Dap|223453|death-associated protein	BC010828|Dap|223453|death-associated protein	AK169162|Dap|223453|death-associated protein	BC057669|Dap|223453|death-associated protein	AK167579|Dap|223453|death-associated protein	AK014991|Dap|223453|death-associated protein	AK167688|Dap|223453|death-associated protein
mm9_v1_chr7_+_138175581_138175593	0.821728	LHX3,4.p2	BC049835|Dmbt1|12945|deleted in malignant brain tumors 1	NM_007769|Dmbt1|12945|deleted in malignant brain tumors 1	U37438|Dmbt1|12945|deleted in malignant brain tumors 1	AB005909|Dmbt1|12945|deleted in malignant brain tumors 1
mm9_v1_chr15_-_58220798_58220828	0.82004	LHX3,4.p2	BC013521|Anxa13|69787|annexin A13	AJ306451|Anxa13|69787|annexin A13	NM_027211|Anxa13|69787|annexin A13
mm9_v1_chr7_-_108986297_108986435	0.818993	LHX3,4.p2	AK133359|Inppl1|16332|inositol polyphosphate phosphatase-like 1	AK149873|Inppl1|16332|inositol polyphosphate phosphatase-like 1	NM_001122739|Inppl1|16332|inositol polyphosphate phosphatase-like 1	BC063080|Inppl1|16332|inositol polyphosphate phosphatase-like 1
mm9_v1_chr7_-_21630003_21630003	0.81738	LHX3,4.p2	NM_001166745|Vmn1r115|667273|vomeronasal 1 receptor 115
mm9_v1_chr19_-_34952328_34952347	0.815183	LHX3,4.p2	BC023496|Pank1|75735|pantothenate kinase 1
mm9_v1_chr1_-_71461469_71461483	0.806821	LHX3,4.p2	AK014713|Abca12|74591|ATP-binding cassette, sub-family A (ABC1), member 12	AK028781|Abca12|74591|ATP-binding cassette, sub-family A (ABC1), member 12	AK029031|Abca12|74591|ATP-binding cassette, sub-family A (ABC1), member 12	NM_175210|Abca12|74591|ATP-binding cassette, sub-family A (ABC1), member 12
mm9_v1_chr1_-_132558108_132558210	0.800681	LHX3,4.p2	AK136735|C4bp|12269|complement component 4 binding protein	AK162345|C4bp|12269|complement component 4 binding protein	AB094486|C4bp|12269|complement component 4 binding protein	AK149477|C4bp|12269|complement component 4 binding protein	BC012257|C4bp|12269|complement component 4 binding protein	AB094485|C4bp|12269|complement component 4 binding protein	NM_007576|C4bp|12269|complement component 4 binding protein	AK050344|C4bp|12269|complement component 4 binding protein	AK149468|C4bp|12269|complement component 4 binding protein	M17122|C4bp|12269|complement component 4 binding protein
mm9_v1_chr3_+_144260300_144260351	0.794912	LHX3,4.p2	AK205282|Sep15|93684|selenoprotein	AK213933|Sep15|93684|selenoprotein	AK218207|Sep15|93684|selenoprotein
mm9_v1_chr11_-_99489523_99489552	0.794574	LHX3,4.p2	BC147087|Krtap4-1|665891|keratin associated protein 4-1	BC147088|Krtap4-1|665891|keratin associated protein 4-1	AK137752|Krtap4-1|665891|keratin associated protein 4-1	NM_001048196|Krtap4-1|665891|keratin associated protein 4-1
mm9_v1_chr16_+_59148654_59148677	0.793873	LHX3,4.p2	BC119110|Olfr195|259000|olfactory receptor 195	NM_146998|Olfr195|259000|olfactory receptor 195
mm9_v1_chr5_-_87964170_87964216	0.787972	LHX3,4.p2	BC024361|Sult1b1|56362|sulfotransferase family 1B, member 1
mm9_v1_chr2_+_152987262_152987297	0.78661	LHX3,4.p2	AK162435|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK048158|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK171487|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	BC110309|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK088012|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK047497|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK087048|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AB093220|Tm9sf4|99237|transmembrane 9 superfamily protein member 4
mm9_v1_chr7_-_77511242_77511282	0.780614	LHX3,4.p2	AK012573|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	AK012322|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2
mm9_v1_chr19_+_58586482_58586511	0.774793	LHX3,4.p2	AK005864|1700011F14Rik|75645|RIKEN cDNA 1700011F14 gene	NM_029372|1700011F14Rik|75645|RIKEN cDNA 1700011F14 gene	BC049707|1700011F14Rik|75645|RIKEN cDNA 1700011F14 gene
mm9_v1_chr8_+_86090622_86090714	0.77397	LHX3,4.p2	AK003300|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	NM_025843|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	AK002678|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	BC034787|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	BC056984|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7
mm9_v1_chr2_+_70312979_70313222	0.771689	LHX3,4.p2	AK036234|Sp5|64406|trans-acting transcription factor 5	NM_022435|Sp5|64406|trans-acting transcription factor 5	BC116691|Sp5|64406|trans-acting transcription factor 5	BC117505|Sp5|64406|trans-acting transcription factor 5	AF279479|Sp5|64406|trans-acting transcription factor 5
mm9_v1_chr7_+_22057197_22057197	0.768967	LHX3,4.p2	NM_001166740|Vmn1r125|667215|vomeronasal 1 receptor 125
mm9_v1_chr17_+_5343877_5344040	0.768317	LHX3,4.p2	AK049919|Arid1b|239985|AT rich interactive domain 1B (SWI-like)	AK021005|Arid1b|239985|AT rich interactive domain 1B (SWI-like)	AK048918|Arid1b|239985|AT rich interactive domain 1B (SWI-like)
mm9_v1_chr1_-_95342168_95342227	0.767872	LHX3,4.p2	BC035301|Hdlbp|110611|high density lipoprotein (HDL) binding protein	BC008524|Hdlbp|110611|high density lipoprotein (HDL) binding protein	AK153965|Hdlbp|110611|high density lipoprotein (HDL) binding protein
mm9_v1_chr2_+_36085945_36085997	0.767111	LHX3,4.p2	AK159907|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	NM_008969|Ptgs1|19224|prostaglandin-endoperoxide synthase 1
mm9_v1_chr4_+_115273542_115273542	0.765674	LHX3,4.p2	NM_001100181|Cyp4a32|100040843|cytochrome P450, family 4, subfamily a, polypeptide 32
mm9_v1_chr4_-_106812064_106812078	0.764033	LHX3,4.p2	AK186076|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene
mm9_v1_chrX_+_35688564_35688695	0.762408	LHX3,4.p2	AK004245|Atp1b4|67821|ATPase, (Na+)/K+ transporting, beta 4 polypeptide
mm9_v1_chr19_-_47766512_47766583	0.761962	LHX3,4.p2	BC125031|Col17a1|12821|collagen, type XVII, alpha 1	BC125032|Col17a1|12821|collagen, type XVII, alpha 1	NM_007732|Col17a1|12821|collagen, type XVII, alpha 1	L08407|Col17a1|12821|collagen, type XVII, alpha 1
mm9_v1_chr5_-_65324796_65324842	0.759897	LHX3,4.p2	AK143721|Tlr1|21897|toll-like receptor 1
mm9_v1_chr6_-_13821449_13821517	0.758722	LHX3,4.p2	BC070405|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK002763|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK011259|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK035027|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK136158|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK028169|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK152937|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene
mm9_v1_chr2_+_174171525_174171529	0.757286	LHX3,4.p2	AK187312|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK215851|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr11_-_6333725_6333827	0.752336	LHX3,4.p2	AK178770|H2afv|77605|H2A histone family, member V
mm9_v1_chr3_+_93136665_93136689	0.752263	LHX3,4.p2	AK004070|Hrnr|68723|hornerin
mm9_v1_chr17_-_44873596_44873596	0.746449	LHX3,4.p2	D14636|Runx2|12393|runt related transcription factor 2	D14637|Runx2|12393|runt related transcription factor 2	NM_001145920|Runx2|12393|runt related transcription factor 2
mm9_v1_chr5_-_135489006_135489022	0.744548	LHX3,4.p2	AK008014|2010001M06Rik|69812|RIKEN cDNA 2010001M06 gene
mm9_v1_chr6_-_142421466_142421628	0.743243	LHX3,4.p2	BC021322|Gys2|232493|glycogen synthase 2	BC158081|Gys2|232493|glycogen synthase 2	NM_145572|Gys2|232493|glycogen synthase 2
mm9_v1_chr1_-_36330235_36330291	0.735826	LHX3,4.p2	BC056622|Neurl3|214854|neuralized homolog 3 homolog (Drosophila)	AF321278|Neurl3|214854|neuralized homolog 3 homolog (Drosophila)	NM_153408|Neurl3|214854|neuralized homolog 3 homolog (Drosophila)	AK040949|Neurl3|214854|neuralized homolog 3 homolog (Drosophila)	AK156207|Neurl3|214854|neuralized homolog 3 homolog (Drosophila)
mm9_v1_chr19_-_44060949_44061012	0.733884	LHX3,4.p2	BC014692|Cpn1|93721|carboxypeptidase N, polypeptide 1	AB021969|Cpn1|93721|carboxypeptidase N, polypeptide 1	AF326477|Cpn1|93721|carboxypeptidase N, polypeptide 1	NM_030703|Cpn1|93721|carboxypeptidase N, polypeptide 1
mm9_v1_chr17_-_46155601_46155620	0.732171	LHX3,4.p2	AK031905|Vegfa|22339|vascular endothelial growth factor A
mm9_v1_chr9_+_92502908_92503003	0.730635	LHX3,4.p2	AK218100|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2
mm9_v1_chr6_-_101327849_101327941	0.723395	LHX3,4.p2	AK173098|Pdzrn3|55983|PDZ domain containing RING finger 3	HM560981|Pdzrn3|55983|PDZ domain containing RING finger 3	AF127084|Pdzrn3|55983|PDZ domain containing RING finger 3	AF127085|Pdzrn3|55983|PDZ domain containing RING finger 3	NM_018884|Pdzrn3|55983|PDZ domain containing RING finger 3
mm9_v1_chr13_+_23625779_23625779	0.720475	LHX3,4.p2	BC125011|Hist1h2af|319173|histone cluster 1, H2af	NM_175661|Hist1h2af|319173|histone cluster 1, H2af
mm9_v1_chr9_-_70782614_70782614	0.719005	LHX3,4.p2	BC021841|Lipc|15450|lipase, hepatic	NM_008280|Lipc|15450|lipase, hepatic
mm9_v1_chr13_+_4232981_4233025	0.718837	LHX3,4.p2	BC087964|Akr1c19|432720|aldo-keto reductase family 1, member C19	NM_001013785|Akr1c19|432720|aldo-keto reductase family 1, member C19
mm9_v1_chr12_-_77896363_77896387	0.716484	LHX3,4.p2	BC054848|Gpx2|14776|glutathione peroxidase 2	BC034335|Gpx2|14776|glutathione peroxidase 2
mm9_v1_chr11_-_69229653_69229709	0.709303	LHX3,4.p2	BC075632|Kdm6b|216850|KDM1 lysine (K)-specific demethylase 6B
mm9_v1_chrX_+_97170927_97171053	0.706036	LHX3,4.p2	AK028502|Eda|13607|ectodysplasin-A	AF016627|Eda|13607|ectodysplasin-A	AF016628|Eda|13607|ectodysplasin-A	AF016629|Eda|13607|ectodysplasin-A	AF016630|Eda|13607|ectodysplasin-A	DQ168876|Eda|13607|ectodysplasin-A	DQ168877|Eda|13607|ectodysplasin-A	DQ168878|Eda|13607|ectodysplasin-A	DQ168879|Eda|13607|ectodysplasin-A	DQ168880|Eda|13607|ectodysplasin-A	DQ168881|Eda|13607|ectodysplasin-A	NM_001177937|Eda|13607|ectodysplasin-A	NM_001177938|Eda|13607|ectodysplasin-A	NM_001177939|Eda|13607|ectodysplasin-A	NM_001177940|Eda|13607|ectodysplasin-A	NM_001177941|Eda|13607|ectodysplasin-A	NM_001177942|Eda|13607|ectodysplasin-A	NM_001177943|Eda|13607|ectodysplasin-A	NM_001177944|Eda|13607|ectodysplasin-A	NM_010099|Eda|13607|ectodysplasin-A	AF016631|Eda|13607|ectodysplasin-A	AJ243657|Eda|13607|ectodysplasin-A	AK040754|Eda|13607|ectodysplasin-A	AF004435|Eda|13607|ectodysplasin-A	AJ243658|Eda|13607|ectodysplasin-A	AK137551|Eda|13607|ectodysplasin-A	BC125387|Eda|13607|ectodysplasin-A	BC144790|Eda|13607|ectodysplasin-A	BC144791|Eda|13607|ectodysplasin-A
mm9_v1_chr9_-_104239997_104240057	0.70448	LHX3,4.p2	AF210243|Acpp|56318|acid phosphatase, prostate	AK020693|Acpp|56318|acid phosphatase, prostate	AK029273|Acpp|56318|acid phosphatase, prostate	AK163330|Acpp|56318|acid phosphatase, prostate	BC139826|Acpp|56318|acid phosphatase, prostate	NM_019807|Acpp|56318|acid phosphatase, prostate	NM_207668|Acpp|56318|acid phosphatase, prostate	AK076383|Acpp|56318|acid phosphatase, prostate
mm9_v1_chr9_-_21571635_21571709	0.703475	LHX3,4.p2	AK189211|Kank2|235041|KN motif and ankyrin repeat domains 2
mm9_v1_chr19_-_32061015_32061042	0.703187	LHX3,4.p2	AK135485|Asah2|54447|N-acylsphingosine amidohydrolase 2
mm9_v1_chr7_-_4965804_4965854	0.703024	LHX3,4.p2	BC138231|Fiz1|23877|Flt3 interacting zinc finger protein 1	BC138232|Fiz1|23877|Flt3 interacting zinc finger protein 1	BC145207|Fiz1|23877|Flt3 interacting zinc finger protein 1	AF126747|Fiz1|23877|Flt3 interacting zinc finger protein 1	BC006633|Fiz1|23877|Flt3 interacting zinc finger protein 1	NM_011813|Fiz1|23877|Flt3 interacting zinc finger protein 1
mm9_v1_chr15_-_99609024_99609168	0.699214	LHX3,4.p2	AK181177|Lima1|65970|LIM domain and actin binding 1
mm9_v1_chr3_-_113159420_113159575	0.698691	LHX3,4.p2	BC100579|Amy2a5|109959|amylase 2a5	BC094924|Amy2a5|109959|amylase 2a5	AK078968|Amy2a5|109959|amylase 2a5	X02576|Amy2a5|109959|amylase 2a5	V00718|Amy2a5|109959|amylase 2a5	X02577|Amy2a5|109959|amylase 2a5	X02578|Amy2a5|109959|amylase 2a5	X02579|Amy2a5|109959|amylase 2a5	AK133526|Amy2a5|109959|amylase 2a5	NM_001042711|Amy2a5|109959|amylase 2a5	NM_001160150|Amy2a4|100043684|amylase 2a4	NM_001160151|Amy2a3|100043686|amylase 2a3	NM_001160152|Amy2a2|100043688|amylase 2a2
mm9_v1_chr7_+_21003290_21003290	0.696058	LHX3,4.p2	NM_001166844|Vmn1r100|100043536|vomeronasal 1 receptor 100
mm9_v1_chr16_+_87553574_87553800	0.694819	LHX3,4.p2	AY033899|ORF63|224419|open reading frame 63	NM_144854|ORF63|224419|open reading frame 63	AK041664|ORF63|224419|open reading frame 63	BC115624|ORF63|224419|open reading frame 63	BC115625|ORF63|224419|open reading frame 63
mm9_v1_chr14_-_73768214_73768311	0.691231	LHX3,4.p2	AK198503|Itm2b|16432|integral membrane protein 2B	AK197360|Itm2b|16432|integral membrane protein 2B	AB030204|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr7_+_139802303_139802366	0.680059	LHX3,4.p2	NM_029609|Lhpp|76429|phospholysine phosphohistidine inorganic pyrophosphate phosphatase	AK009207|Lhpp|76429|phospholysine phosphohistidine inorganic pyrophosphate phosphatase	BC065789|Lhpp|76429|phospholysine phosphohistidine inorganic pyrophosphate phosphatase
mm9_v1_chr3_-_154718282_154718370	0.678781	LHX3,4.p2	AK052882|Tnni3k|435766|TNNI3 interacting kinase	BC139368|Tnni3k|435766|TNNI3 interacting kinase	BC139394|Tnni3k|435766|TNNI3 interacting kinase	AK084817|Tnni3k|435766|TNNI3 interacting kinase	AY526095|Tnni3k|435766|TNNI3 interacting kinase	AY526096|Tnni3k|435766|TNNI3 interacting kinase	NM_177066|Tnni3k|435766|TNNI3 interacting kinase
mm9_v1_chr11_+_93905443_93905464	0.67844	LHX3,4.p2	AK147537|Spag9|70834|sperm associated antigen 9	AK147431|Spag9|70834|sperm associated antigen 9
mm9_v1_chr15_+_7090525_7090548	0.678198	LHX3,4.p2	D17444|Lifr|16880|leukemia inhibitory factor receptor	D26177|Lifr|16880|leukemia inhibitory factor receptor	S73495|Lifr|16880|leukemia inhibitory factor receptor	S73496|Lifr|16880|leukemia inhibitory factor receptor	NM_013584|Lifr|16880|leukemia inhibitory factor receptor	BC031929|Lifr|16880|leukemia inhibitory factor receptor
mm9_v1_chr7_-_15031917_15031936	0.676446	LHX3,4.p2	EU486167|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	AK041070|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	NM_175250|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	EU486166|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene
mm9_v1_chr7_+_23198601_23198601	0.674722	LHX3,4.p2	NM_001166844|Vmn1r100|100043536|vomeronasal 1 receptor 100
mm9_v1_chr19_-_20465115_20465131	0.673274	LHX3,4.p2	BC002289|Anxa1|16952|annexin A1
mm9_v1_chr2_+_105744791_105744850	0.666719	LHX3,4.p2	AK005356|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011278|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	NM_028260|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011382|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK078300|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011466|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK015978|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011618|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011872|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011420|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK135670|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK009570|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK010075|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK012181|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK168202|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	BC008259|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
mm9_v1_chr13_-_23790310_23790328	0.665331	LHX3,4.p2	BC115451|Hist1h4c|319155|histone cluster 1, H4c	BC115450|Hist1h4c|319155|histone cluster 1, H4c	BC139809|Hist1h4c|319155|histone cluster 1, H4c	NM_178208|Hist1h4c|319155|histone cluster 1, H4c
mm9_v1_chr11_-_99236216_99236218	0.656947	LHX3,4.p2	AB288231|Krt28|70843|keratin 28	AK014642|Krt28|70843|keratin 28	NM_027574|Krt28|70843|keratin 28
mm9_v1_chr19_-_39537540_39537568	0.656341	LHX3,4.p2	AF047725|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	AK050051|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	BC150721|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	NM_010002|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38
mm9_v1_chr12_-_55896488_55896574	0.654248	LHX3,4.p2	BC025911|Snx6|72183|sorting nexin 6
mm9_v1_chr1_+_166053832_166053832	0.653827	LHX3,4.p2	BC109158|Selp|20344|selectin, platelet	BC109159|Selp|20344|selectin, platelet	M87861|Selp|20344|selectin, platelet	NM_011347|Selp|20344|selectin, platelet
mm9_v1_chr16_-_38433223_38433224	0.650926	LHX3,4.p2	BC030670|Pla1a|85031|phospholipase A1 member A	AF063498|Pla1a|85031|phospholipase A1 member A	NM_134102|Pla1a|85031|phospholipase A1 member A
mm9_v1_chr3_-_113094211_113094366	0.650276	LHX3,4.p2	BC100579|Amy2a5|109959|amylase 2a5	BC094924|Amy2a5|109959|amylase 2a5	AK078968|Amy2a5|109959|amylase 2a5	X02576|Amy2a5|109959|amylase 2a5	V00718|Amy2a5|109959|amylase 2a5	X02577|Amy2a5|109959|amylase 2a5	X02578|Amy2a5|109959|amylase 2a5	X02579|Amy2a5|109959|amylase 2a5	AK133526|Amy2a5|109959|amylase 2a5	NM_001042711|Amy2a5|109959|amylase 2a5	NM_001160150|Amy2a4|100043684|amylase 2a4	NM_001160151|Amy2a3|100043686|amylase 2a3	NM_001160152|Amy2a2|100043688|amylase 2a2
mm9_v1_chr3_-_113061599_113061616	0.6489	LHX3,4.p2	BC100579|Amy2a5|109959|amylase 2a5	BC094924|Amy2a5|109959|amylase 2a5	AK078968|Amy2a5|109959|amylase 2a5	X02576|Amy2a5|109959|amylase 2a5	V00718|Amy2a5|109959|amylase 2a5	X02577|Amy2a5|109959|amylase 2a5	X02578|Amy2a5|109959|amylase 2a5	X02579|Amy2a5|109959|amylase 2a5	AK133526|Amy2a5|109959|amylase 2a5	NM_001042711|Amy2a5|109959|amylase 2a5
mm9_v1_chr19_+_25107619_25107625	0.643686	LHX3,4.p2	BC087907|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4
mm9_v1_chr14_-_69151731_69151797	0.64347	LHX3,4.p2	AF013107|Adam7|11500|a disintegrin and metallopeptidase domain 7	AK136692|Adam7|11500|a disintegrin and metallopeptidase domain 7	NM_007402|Adam7|11500|a disintegrin and metallopeptidase domain 7	AK020312|Adam7|11500|a disintegrin and metallopeptidase domain 7
mm9_v1_chr2_+_87366184_87366358	0.643003	LHX3,4.p2	BC090254|Srp9|27058|signal recognition particle 9
mm9_v1_chr2_-_60589059_60589160	0.641669	LHX3,4.p2	AK011205|Rbms1|56878|RNA binding motif, single stranded interacting protein 1
mm9_v1_chr3_-_113126814_113126969	0.637543	LHX3,4.p2	BC100579|Amy2a5|109959|amylase 2a5	BC094924|Amy2a5|109959|amylase 2a5	AK078968|Amy2a5|109959|amylase 2a5	X02576|Amy2a5|109959|amylase 2a5	V00718|Amy2a5|109959|amylase 2a5	X02577|Amy2a5|109959|amylase 2a5	X02578|Amy2a5|109959|amylase 2a5	X02579|Amy2a5|109959|amylase 2a5	AK133526|Amy2a5|109959|amylase 2a5	NM_001042711|Amy2a5|109959|amylase 2a5	NM_001160150|Amy2a4|100043684|amylase 2a4	NM_001160151|Amy2a3|100043686|amylase 2a3	NM_001160152|Amy2a2|100043688|amylase 2a2
mm9_v1_chr12_+_111723922_111723992	0.637505	LHX3,4.p2	AK031584|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081457|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081458|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_012023|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	BC003979|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr16_+_43321404_43321450	0.635952	LHX3,4.p2	
mm9_v1_chr2_-_148676641_148676677	0.631668	LHX3,4.p2	BC104302|9230104L09Rik|77705|RIKEN cDNA 9230104L09 gene	BC104303|9230104L09Rik|77705|RIKEN cDNA 9230104L09 gene	AK020314|9230104L09Rik|77705|RIKEN cDNA 9230104L09 gene	NM_029960|9230104L09Rik|77705|RIKEN cDNA 9230104L09 gene
mm9_v1_chr3_-_75073981_75073999	0.631429	LHX3,4.p2	AF251276|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2	AK007347|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2	AK008931|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2	NM_026460|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2
mm9_v1_chr3_+_93324437_93324454	0.630401	LHX3,4.p2	BC021916|S100a11|20195|S100 calcium binding protein A11 (calgizzarin)
mm9_v1_chr6_+_34730416_34730462	0.629216	LHX3,4.p2	AK029793|Agbl3|76223|ATP/GTP binding protein-like 3	DQ867031|Agbl3|76223|ATP/GTP binding protein-like 3	DQ867032|Agbl3|76223|ATP/GTP binding protein-like 3	NM_178630|Agbl3|76223|ATP/GTP binding protein-like 3	AK054066|Agbl3|76223|ATP/GTP binding protein-like 3	AK018326|Agbl3|76223|ATP/GTP binding protein-like 3
mm9_v1_chr11_+_59120429_59120467	0.627923	LHX3,4.p2	AK087490|Wnt9a|216795|wingless-type MMTV integration site 9A	NM_139298|Wnt9a|216795|wingless-type MMTV integration site 9A	BC066165|Wnt9a|216795|wingless-type MMTV integration site 9A	AB072311|Wnt9a|216795|wingless-type MMTV integration site 9A
mm9_v1_chr5_-_87998014_87998030	0.620483	LHX3,4.p2	AK160466|Sult1d1|53315|sulfotransferase family 1D, member 1	NM_016771|Sult1d1|53315|sulfotransferase family 1D, member 1
mm9_v1_chr2_-_9981155_9981246	0.619445	LHX3,4.p2	AK187037|Atp5c1|11949|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
mm9_v1_chr9_-_70452528_70452545	0.618701	LHX3,4.p2	AK041072|Fam63b|235461|family with sequence similarity 63, member B
mm9_v1_chr17_-_56175896_56176097	0.618286	LHX3,4.p2	AK162715|Sh3gl1|20405|SH3-domain GRB2-like 1	BC138602|Sh3gl1|20405|SH3-domain GRB2-like 1	BC138603|Sh3gl1|20405|SH3-domain GRB2-like 1	BC145345|Sh3gl1|20405|SH3-domain GRB2-like 1	NM_013664|Sh3gl1|20405|SH3-domain GRB2-like 1	U58885|Sh3gl1|20405|SH3-domain GRB2-like 1	AK167505|Sh3gl1|20405|SH3-domain GRB2-like 1	AK154836|Sh3gl1|20405|SH3-domain GRB2-like 1
mm9_v1_chr1_+_135247242_135247279	0.613409	LHX3,4.p2	J00621|Ren2|19702|renin 2 tandem duplication of Ren1	AK052685|Ren1|19701|renin 1 structural	AK085309|Ren1|19701|renin 1 structural	NM_031192|Ren1|19701|renin 1 structural	BC061053|Ren1|19701|renin 1 structural	BC011157|Ren2|19702|renin 2 tandem duplication of Ren1	BC011473|Ren2|19702|renin 2 tandem duplication of Ren1	X16642|Ren1|19701|renin 1 structural	BC024331|Ren1|19701|renin 1 structural
mm9_v1_chr11_+_62875160_62875262	0.613341	LHX3,4.p2	AK016718|Tekt3|71062|tektin 3	AY252101|Tekt3|71062|tektin 3	NM_027660|Tekt3|71062|tektin 3	BC139074|Tekt3|71062|tektin 3	BC139075|Tekt3|71062|tektin 3	BC127605|Tekt3|71062|tektin 3	BC128270|Tekt3|71062|tektin 3
mm9_v1_chr5_-_64360058_64360140	0.610511	LHX3,4.p2	AK133845|Rell1|100532|RELT-like 1	AK159944|Rell1|100532|RELT-like 1	AK161061|Rell1|100532|RELT-like 1	BC031198|Rell1|100532|RELT-like 1	BC066137|Rell1|100532|RELT-like 1	BC066160|Rell1|100532|RELT-like 1	AK140108|Rell1|100532|RELT-like 1	NM_145923|Rell1|100532|RELT-like 1
mm9_v1_chrX_+_93651684_93651766	0.608156	LHX3,4.p2	NM_001159627|Heph|15203|hephaestin	NM_181273|Heph|15203|hephaestin	AK081330|Heph|15203|hephaestin	AK129194|Heph|15203|hephaestin	AK032895|Heph|15203|hephaestin	AK086923|Heph|15203|hephaestin
mm9_v1_chr1_-_39608846_39608882	0.606071	LHX3,4.p2	AK040602|Rnf149|67702|ring finger protein 149
mm9_v1_chr12_+_60196786_60196786	0.604445	LHX3,4.p2	AF390177|Mia2|338320|melanoma inhibitory activity 2	NM_177321|Mia2|338320|melanoma inhibitory activity 2
mm9_v1_chr13_+_81022644_81022695	0.597956	LHX3,4.p2	AK088288|Arrdc3|105171|arrestin domain containing 3	AK084951|Arrdc3|105171|arrestin domain containing 3	BC054844|Arrdc3|105171|arrestin domain containing 3	NM_001042591|Arrdc3|105171|arrestin domain containing 3	BC044762|Arrdc3|105171|arrestin domain containing 3	BC098474|Arrdc3|105171|arrestin domain containing 3	AK122499|Arrdc3|105171|arrestin domain containing 3
mm9_v1_chr14_-_65035722_65035811	0.59631	LHX3,4.p2	AK018338|Msra|110265|methionine sulfoxide reductase A
mm9_v1_chr7_+_29225955_29226034	0.591745	LHX3,4.p2	AK009967|Gmfg|63986|glia maturation factor, gamma	NM_001039192|Gmfg|63986|glia maturation factor, gamma	AB003588|Gmfg|63986|glia maturation factor, gamma
mm9_v1_chr6_-_29457924_29457972	0.59167	LHX3,4.p2	BC119794|Kcp|333088|kielin/chordin-like protein	NM_001029985|Kcp|333088|kielin/chordin-like protein	AY884211|Kcp|333088|kielin/chordin-like protein	AK154369|Kcp|333088|kielin/chordin-like protein
mm9_v1_chr11_+_43534658_43534687	0.58851	LHX3,4.p2	AK086604|Pwwp2a|70802|PWWP domain containing 2A	AK039984|Pwwp2a|70802|PWWP domain containing 2A
mm9_v1_chr8_-_95603838_95603915	0.586975	LHX3,4.p2	NM_001081372|Ces1b|382044|carboxylesterase 1B
mm9_v1_chr6_+_29479250_29479325	0.586381	LHX3,4.p2	AK156220|Irf5|27056|interferon regulatory factor 5
mm9_v1_chr7_-_29678773_29678890	0.585647	LHX3,4.p2	AK195007|Actn4|60595|actinin alpha 4
mm9_v1_chr6_+_123212124_123212192	0.58488	LHX3,4.p2	NM_001163161|Clec4d|17474|C-type lectin domain family 4, member d	NM_010819|Clec4d|17474|C-type lectin domain family 4, member d	AK155919|Clec4d|17474|C-type lectin domain family 4, member d	AK089500|Clec4d|17474|C-type lectin domain family 4, member d	AK171409|Clec4d|17474|C-type lectin domain family 4, member d	AK170692|Clec4d|17474|C-type lectin domain family 4, member d	AF061272|Clec4d|17474|C-type lectin domain family 4, member d
mm9_v1_chr13_+_27437541_27437557	0.582531	LHX3,4.p2	AK131668|Prl8a2|13529|prolactin family 8, subfamily a, member 2	AK146049|Prl8a2|13529|prolactin family 8, subfamily a, member 2	BC061150|Prl8a2|13529|prolactin family 8, subfamily a, member 2	AF015729|Prl8a2|13529|prolactin family 8, subfamily a, member 2	AF011385|Prl8a2|13529|prolactin family 8, subfamily a, member 2	NM_010088|Prl8a2|13529|prolactin family 8, subfamily a, member 2
mm9_v1_chr13_-_53568111_53568148	0.570727	LHX3,4.p2	AK131974|Msx2|17702|homeobox, msh-like 2	BC141132|Msx2|17702|homeobox, msh-like 2	AK133846|Msx2|17702|homeobox, msh-like 2	NM_013601|Msx2|17702|homeobox, msh-like 2
mm9_v1_chr12_-_52849709_52849723	0.566437	LHX3,4.p2	AK077185|Hectd1|207304|HECT domain containing 1
mm9_v1_chr3_+_63100101_63100109	0.566066	LHX3,4.p2	AK033824|Mme|17380|membrane metallo endopeptidase
mm9_v1_chr2_-_163450863_163450871	0.562726	LHX3,4.p2	AK003471|Serinc3|26943|serine incorporator 3
mm9_v1_chr9_+_35367050_35367089	0.557399	LHX3,4.p2	AK019213|Pus3|67049|pseudouridine synthase 3	AK079095|Pus3|67049|pseudouridine synthase 3	NM_023292|Pus3|67049|pseudouridine synthase 3	AK017552|Pus3|67049|pseudouridine synthase 3	BC029253|Pus3|67049|pseudouridine synthase 3
mm9_v1_chr4_-_147808800_147808920	0.557054	LHX3,4.p2	
mm9_v1_chr15_+_102864825_102864872	0.556738	LHX3,4.p2	NM_013553|Hoxc4|15423|homeobox C4	X69019|Hoxc4|15423|homeobox C4	BC144778|Hoxc4|15423|homeobox C4	BC150664|Hoxc4|15423|homeobox C4
mm9_v1_chr19_+_32694494_32694583	0.552099	LHX3,4.p2	AK128962|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	BC090997|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	NM_011864|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	AF052453|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	AF085144|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2
mm9_v1_chr3_+_121656136_121656252	0.550591	LHX3,4.p2	BC040387|Arhgap29|214137|Rho GTPase activating protein 29	NM_172525|Arhgap29|214137|Rho GTPase activating protein 29
mm9_v1_chr19_-_8479532_8479600	0.548962	LHX3,4.p2	BC132146|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	BC132336|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	BC016496|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	BC050265|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	AK052592|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	AK040781|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	AK050438|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	AK080180|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	NM_177002|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	AK057654|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene
mm9_v1_chr2_-_84281089_84281145	0.544503	LHX3,4.p2	AK084706|Tfpi|21788|tissue factor pathway inhibitor
mm9_v1_chr7_+_133924996_133925020	0.544388	LHX3,4.p2	BC140951|Tbx6|21389|T-box 6	NM_011538|Tbx6|21389|T-box 6	U57331|Tbx6|21389|T-box 6	AY654733|Tbx6|21389|T-box 6
mm9_v1_chr6_-_87483228_87483252	0.54265	LHX3,4.p2	AK169897|Arhgap25|232201|Rho GTPase activating protein 25	NM_001037727|Arhgap25|232201|Rho GTPase activating protein 25	AK159598|Arhgap25|232201|Rho GTPase activating protein 25	AK159941|Arhgap25|232201|Rho GTPase activating protein 25
mm9_v1_chr19_+_44567961_44568029	0.53906	LHX3,4.p2	AK050992|Wnt8b|22423|wingless related MMTV integration site 8b	NM_011720|Wnt8b|22423|wingless related MMTV integration site 8b	AF130349|Wnt8b|22423|wingless related MMTV integration site 8b	BC119544|Wnt8b|22423|wingless related MMTV integration site 8b
mm9_v1_chr19_+_55969810_55969810	0.537431	LHX3,4.p2	NM_001142924|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box
mm9_v1_chr3_-_14808320_14808364	0.528004	LHX3,4.p2	BC132432|Car1|12346|carbonic anhydrase 1	BC132434|Car1|12346|carbonic anhydrase 1	M32452|Car1|12346|carbonic anhydrase 1	AK172076|Car1|12346|carbonic anhydrase 1	AK003066|Car1|12346|carbonic anhydrase 1	AK146372|Car1|12346|carbonic anhydrase 1	AK167969|Car1|12346|carbonic anhydrase 1	NM_009799|Car1|12346|carbonic anhydrase 1
mm9_v1_chr3_-_57098670_57098869	0.527571	LHX3,4.p2	L15429|Tm4sf1|17112|transmembrane 4 superfamily member 1	L15443|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK133556|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK077326|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK164718|Tm4sf1|17112|transmembrane 4 superfamily member 1
mm9_v1_chr4_+_134676559_134676571	0.523955	LHX3,4.p2	NM_019732|Runx3|12399|runt related transcription factor 3	AK155436|Runx3|12399|runt related transcription factor 3	AK155802|Runx3|12399|runt related transcription factor 3
mm9_v1_chr9_-_123883223_123883240	0.522231	LHX3,4.p2	AK036597|Ccr1|12768|chemokine (C-C motif) receptor 1	BC011092|Ccr1|12768|chemokine (C-C motif) receptor 1
mm9_v1_chr14_+_63665827_63665903	0.522054	LHX3,4.p2	AK079042|Defb42|619548|defensin beta 42	DQ012046|Defb42|619548|defensin beta 42	NM_001034910|Defb42|619548|defensin beta 42
mm9_v1_chr16_-_20610796_20610837	0.519238	LHX3,4.p2	BC031893|Alg3|208624|asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)	AK090067|Alg3|208624|asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)	AK149510|Alg3|208624|asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)	NM_145939|Alg3|208624|asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)
mm9_v1_chr9_-_106060406_106060468	0.516632	LHX3,4.p2	AK052709|Glyctk|235582|glycerate kinase	BC036136|Glyctk|235582|glycerate kinase	BC025935|Glyctk|235582|glycerate kinase	AF455785|Glyctk|235582|glycerate kinase	BC025834|Glyctk|235582|glycerate kinase	BC033063|Glyctk|235582|glycerate kinase	AK049425|Glyctk|235582|glycerate kinase	AK050182|Glyctk|235582|glycerate kinase	NM_001039586|Glyctk|235582|glycerate kinase	NM_174846|Glyctk|235582|glycerate kinase
mm9_v1_chr3_+_59533707_59533707	0.516243	LHX3,4.p2	NM_001101531|Gm5538|433597|predicted gene 5538
mm9_v1_chr5_-_123271207_123271281	0.510007	LHX3,4.p2	AK152528|Anapc5|59008|anaphase-promoting complex subunit 5	BC010339|Anapc5|59008|anaphase-promoting complex subunit 5	AK013978|Anapc5|59008|anaphase-promoting complex subunit 5	AK031432|Anapc5|59008|anaphase-promoting complex subunit 5	AK168135|Anapc5|59008|anaphase-promoting complex subunit 5
mm9_v1_chr12_-_57637894_57637894	0.507887	LHX3,4.p2	BC057607|Nkx2-1|21869|NK2 homeobox 1	NM_009385|Nkx2-1|21869|NK2 homeobox 1
mm9_v1_chr17_+_56752805_56752873	0.50733	LHX3,4.p2	NM_018730|Rpl36|54217|ribosomal protein L36	AK003115|Rpl36|54217|ribosomal protein L36	BC086914|Rpl36|54217|ribosomal protein L36	BC021595|Rpl36|54217|ribosomal protein L36	X75895|Rpl36|54217|ribosomal protein L36
mm9_v1_chr18_+_21230844_21230846	0.506842	LHX3,4.p2	AK098127|Mep1b|17288|meprin 1 beta	L15193|Mep1b|17288|meprin 1 beta	NM_008586|Mep1b|17288|meprin 1 beta	BC145979|Mep1b|17288|meprin 1 beta	BC125627|Mep1b|17288|meprin 1 beta
mm9_v1_chr2_-_134380065_134380100	0.501169	LHX3,4.p2	BC018587|Hao1|15112|hydroxyacid oxidase 1, liver	AF104312|Hao1|15112|hydroxyacid oxidase 1, liver	BC119535|Hao1|15112|hydroxyacid oxidase 1, liver	BC119536|Hao1|15112|hydroxyacid oxidase 1, liver	NM_010403|Hao1|15112|hydroxyacid oxidase 1, liver	AK149565|Hao1|15112|hydroxyacid oxidase 1, liver
mm9_v1_chr8_+_28164658_28164830	0.497852	LHX3,4.p2	AK219818|Prosc|114863|proline synthetase co-transcribed
mm9_v1_chr1_-_135517936_135517963	0.494503	LHX3,4.p2	AK003350|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr19_-_41289045_41289143	0.493327	LHX3,4.p2	AK004050|Tm9sf3|107358|transmembrane 9 superfamily member 3
mm9_v1_chr10_-_19627418_19627496	0.493265	LHX3,4.p2	AK160195|Pex7|18634|peroxisomal biogenesis factor 7	BC132213|Pex7|18634|peroxisomal biogenesis factor 7	BC132503|Pex7|18634|peroxisomal biogenesis factor 7	BC145300|Pex7|18634|peroxisomal biogenesis factor 7	U69171|Pex7|18634|peroxisomal biogenesis factor 7	AK053868|Pex7|18634|peroxisomal biogenesis factor 7	AK004687|Pex7|18634|peroxisomal biogenesis factor 7	NM_001161825|Pex7|18634|peroxisomal biogenesis factor 7	NM_008822|Pex7|18634|peroxisomal biogenesis factor 7
mm9_v1_chr5_-_87997908_87998005	0.490507	LHX3,4.p2	AF026073|Sult1d1|53315|sulfotransferase family 1D, member 1	AK133530|Sult1d1|53315|sulfotransferase family 1D, member 1	U32371|Sult1d1|53315|sulfotransferase family 1D, member 1	BC066190|Sult1d1|53315|sulfotransferase family 1D, member 1	BC010752|Sult1d1|53315|sulfotransferase family 1D, member 1
mm9_v1_chr5_-_89886732_89886828	0.488798	LHX3,4.p2	M55413|Gc|14473|group specific component	AK010965|Gc|14473|group specific component	BC010762|Gc|14473|group specific component	BC051395|Gc|14473|group specific component	NM_008096|Gc|14473|group specific component
mm9_v1_chr4_+_64785795_64785812	0.486818	LHX3,4.p2	AF439513|Pappa|18491|pregnancy-associated plasma protein A	AF439514|Pappa|18491|pregnancy-associated plasma protein A
mm9_v1_chr13_-_55650696_55650820	0.486205	LHX3,4.p2	BC023015|Fam193b|212483|family with sequence similarity 193, member B	BC021381|Fam193b|212483|family with sequence similarity 193, member B
mm9_v1_chr3_-_95674541_95674541	0.485681	LHX3,4.p2	BC027546|Mrps21|66292|mitochondrial ribosomal protein S21	BC125658|Mrps21|66292|mitochondrial ribosomal protein S21	BC125660|Mrps21|66292|mitochondrial ribosomal protein S21	NM_078479|Mrps21|66292|mitochondrial ribosomal protein S21
mm9_v1_chr11_-_100683830_100683883	0.483728	LHX3,4.p2	AY040231|Stat5b|20851|signal transducer and activator of transcription 5B	AY042906|Stat5b|20851|signal transducer and activator of transcription 5B	AY044901|Stat5b|20851|signal transducer and activator of transcription 5B	AY044902|Stat5b|20851|signal transducer and activator of transcription 5B	AY044903|Stat5b|20851|signal transducer and activator of transcription 5B	U21110|Stat5b|20851|signal transducer and activator of transcription 5B	AK088966|Stat5b|20851|signal transducer and activator of transcription 5B	AK154014|Stat5b|20851|signal transducer and activator of transcription 5B	NM_011489|Stat5b|20851|signal transducer and activator of transcription 5B
mm9_v1_chr17_-_35183469_35183583	0.48223	LHX3,4.p2	BC030034|Msh5|17687|mutS homolog 5 (E. coli)	BC141113|Msh5|17687|mutS homolog 5 (E. coli)	BC145406|Msh5|17687|mutS homolog 5 (E. coli)	BC145407|Msh5|17687|mutS homolog 5 (E. coli)	NM_013600|Msh5|17687|mutS homolog 5 (E. coli)	AF146227|Msh5|17687|mutS homolog 5 (E. coli)
mm9_v1_chr1_-_37973274_37973337	0.48215	LHX3,4.p2	BC147562|Lyg2|332427|lysozyme G-like 2	BC147567|Lyg2|332427|lysozyme G-like 2	AK132442|Lyg2|332427|lysozyme G-like 2	NM_001033427|Lyg2|332427|lysozyme G-like 2
mm9_v1_chr14_-_122314994_122315068	0.481705	LHX3,4.p2	AK172401|Gpr18|110168|G protein-coupled receptor 18	BC034872|Gpr18|110168|G protein-coupled receptor 18	NM_182806|Gpr18|110168|G protein-coupled receptor 18	AK157029|Gpr18|110168|G protein-coupled receptor 18	AK156868|Gpr18|110168|G protein-coupled receptor 18	AK156039|Gpr18|110168|G protein-coupled receptor 18
mm9_v1_chr15_+_81575277_81575277	0.477592	LHX3,4.p2	NM_001081016|Zc3h7b|20286|zinc finger CCCH type containing 7B
mm9_v1_chr4_+_97444494_97444517	0.471623	LHX3,4.p2	AK052204|Nfia|18027|nuclear factor I/A
mm9_v1_chr19_+_41624128_41624128	0.466745	LHX3,4.p2	AK041090|Lcor|212391|ligand dependent nuclear receptor corepressor	NM_172154|Lcor|212391|ligand dependent nuclear receptor corepressor
mm9_v1_chr6_-_141895265_141895330	0.465893	LHX3,4.p2	BC041147|Slco1a1|28248|solute carrier organic anion transporter family, member 1a1	AF148218|Slco1a1|28248|solute carrier organic anion transporter family, member 1a1	AF223067|Slco1a1|28248|solute carrier organic anion transporter family, member 1a1	AY195868|Slco1a1|28248|solute carrier organic anion transporter family, member 1a1	AY195869|Slco1a1|28248|solute carrier organic anion transporter family, member 1a1	AY243579|Slco1a1|28248|solute carrier organic anion transporter family, member 1a1	AB031813|Slco1a1|28248|solute carrier organic anion transporter family, member 1a1	AK041125|Slco1a1|28248|solute carrier organic anion transporter family, member 1a1
mm9_v1_chr4_-_134323845_134323948	0.464364	LHX3,4.p2	BC021467|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK159800|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	BC066808|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	BC067411|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK167290|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK029008|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK148340|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	NM_145554|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1
mm9_v1_chr3_+_127336055_127336062	0.46375	LHX3,4.p2	AK143190|Neurog2|11924|neurogenin 2	BC055743|Neurog2|11924|neurogenin 2	NM_009718|Neurog2|11924|neurogenin 2
mm9_v1_chr2_+_120229566_120229631	0.463123	LHX3,4.p2	AK036238|Ganc|76051|glucosidase, alpha; neutral C	NM_172672|Ganc|76051|glucosidase, alpha; neutral C
mm9_v1_chr3_+_132772586_132772695	0.461063	LHX3,4.p2	AK015941|Ints12|71793|integrator complex subunit 12
mm9_v1_chr9_-_51137021_51137021	0.458862	LHX3,4.p2	AK007796|1810046K07Rik|69809|RIKEN cDNA 1810046K07 gene	NM_027217|1810046K07Rik|69809|RIKEN cDNA 1810046K07 gene
mm9_v1_chr2_+_74560034_74560034	0.458028	LHX3,4.p2	NM_010469|Hoxd4|15436|homeobox D4
mm9_v1_chr13_-_55201578_55201611	0.455439	LHX3,4.p2	BC051659|Uimc1|20184|ubiquitin interaction motif containing 1	BC066220|Uimc1|20184|ubiquitin interaction motif containing 1	AK083342|Uimc1|20184|ubiquitin interaction motif containing 1	BC037092|Uimc1|20184|ubiquitin interaction motif containing 1	BC040808|Uimc1|20184|ubiquitin interaction motif containing 1
mm9_v1_chr15_-_66644199_66644302	0.455071	LHX3,4.p2	AJ131777|Sla|20491|src-like adaptor	AK037901|Sla|20491|src-like adaptor	AK137954|Sla|20491|src-like adaptor
mm9_v1_chr6_-_13557981_13558062	0.454068	LHX3,4.p2	BC024911|Tmem168|101118|transmembrane protein 168	BC007160|Tmem168|101118|transmembrane protein 168	AK054353|Tmem168|101118|transmembrane protein 168	AK152957|Tmem168|101118|transmembrane protein 168	AK034589|Tmem168|101118|transmembrane protein 168	AK170302|Tmem168|101118|transmembrane protein 168	AK018471|Tmem168|101118|transmembrane protein 168	AK051532|Tmem168|101118|transmembrane protein 168	NM_028990|Tmem168|101118|transmembrane protein 168
mm9_v1_chr11_+_93905557_93905590	0.452513	LHX3,4.p2	BC052058|Spag9|70834|sperm associated antigen 9	BC060100|Spag9|70834|sperm associated antigen 9	BC094670|Spag9|70834|sperm associated antigen 9
mm9_v1_chr8_-_42300504_42300520	0.451011	LHX3,4.p2	AF478470|Fgl1|234199|fibrinogen-like protein 1	AK083397|Fgl1|234199|fibrinogen-like protein 1	NM_145594|Fgl1|234199|fibrinogen-like protein 1
mm9_v1_chr6_-_52177368_52177368	0.448758	LHX3,4.p2	AB005457|Hoxa9|15405|homeobox A9	NM_010456|Hoxa9|15405|homeobox A9
mm9_v1_chr9_+_5308846_5308883	0.447627	LHX3,4.p2	AK078836|Casp4|12363|caspase 4, apoptosis-related cysteine peptidase	AK138730|Casp4|12363|caspase 4, apoptosis-related cysteine peptidase	AK151547|Casp4|12363|caspase 4, apoptosis-related cysteine peptidase	BC061255|Casp4|12363|caspase 4, apoptosis-related cysteine peptidase	NM_007609|Casp4|12363|caspase 4, apoptosis-related cysteine peptidase	AK156667|Casp4|12363|caspase 4, apoptosis-related cysteine peptidase	AK160328|Casp4|12363|caspase 4, apoptosis-related cysteine peptidase	AK171877|Casp4|12363|caspase 4, apoptosis-related cysteine peptidase	U59463|Casp4|12363|caspase 4, apoptosis-related cysteine peptidase	Y13089|Casp4|12363|caspase 4, apoptosis-related cysteine peptidase
mm9_v1_chr9_-_62644026_62644272	0.447055	LHX3,4.p2	AK078303|Fem1b|14155|feminization 1 homolog b (C. elegans)	AK160393|Fem1b|14155|feminization 1 homolog b (C. elegans)
mm9_v1_chr3_+_63100128_63100144	0.443094	LHX3,4.p2	AK040730|Mme|17380|membrane metallo endopeptidase	AK080202|Mme|17380|membrane metallo endopeptidase	BC034092|Mme|17380|membrane metallo endopeptidase
mm9_v1_chr15_+_25682945_25682960	0.442262	LHX3,4.p2	AK161653|Myo10|17909|myosin X
mm9_v1_chr17_-_28536455_28536544	0.441473	LHX3,4.p2	AK199818|Fkbp5|14229|FK506 binding protein 5
mm9_v1_chr3_-_40659202_40659202	0.440681	LHX3,4.p2	AK077188|Gm10731|100039043|predicted gene 10731	NM_001129886|Gm10731|100039043|predicted gene 10731
mm9_v1_chrX_+_98835386_98835624	0.438517	LHX3,4.p2	AK076418|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	NM_139144|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	AK163296|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	BC025097|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	BC057319|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	BC037194|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	BC055851|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	AF363030|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
mm9_v1_chr19_-_8206403_8206471	0.437018	LHX3,4.p2	BC139174|Gm5631|434674|predicted gene 5631	AK052719|Gm5631|434674|predicted gene 5631	NM_001013820|Gm5631|434674|predicted gene 5631
mm9_v1_chr10_-_26095736_26095813	0.437009	LHX3,4.p2	BC082309|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)	AK031398|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)
mm9_v1_chr8_+_34807688_34807718	0.436241	LHX3,4.p2	AK027984|Gsr|14782|glutathione reductase
mm9_v1_chr8_-_96496001_96496082	0.435344	LHX3,4.p2	AK197102|Amfr|23802|autocrine motility factor receptor
mm9_v1_chrX_-_7258190_7258376	0.433252	LHX3,4.p2	BC099459|Magix|54634|MAGI family member, X-linked	NM_018832|Magix|54634|MAGI family member, X-linked	AK158091|Magix|54634|MAGI family member, X-linked	AK077898|Magix|54634|MAGI family member, X-linked
mm9_v1_chr7_+_74792295_74792398	0.432906	LHX3,4.p2	AK086049|Ttc23|67009|tetratricopeptide repeat domain 23	AK165626|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168475|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168476|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168477|Ttc23|67009|tetratricopeptide repeat domain 23	NM_025905|Ttc23|67009|tetratricopeptide repeat domain 23	AK141754|Ttc23|67009|tetratricopeptide repeat domain 23	BC038179|Ttc23|67009|tetratricopeptide repeat domain 23	AK005431|Ttc23|67009|tetratricopeptide repeat domain 23	AK084269|Ttc23|67009|tetratricopeptide repeat domain 23	AK166555|Ttc23|67009|tetratricopeptide repeat domain 23	AK166613|Ttc23|67009|tetratricopeptide repeat domain 23
mm9_v1_chr13_+_75977323_75977523	0.432372	LHX3,4.p2	NM_053108|Glrx|93692|glutaredoxin	AK013722|Glrx|93692|glutaredoxin	AK153086|Glrx|93692|glutaredoxin	AF109314|Glrx|93692|glutaredoxin	AB013137|Glrx|93692|glutaredoxin	BC012642|Glrx|93692|glutaredoxin	BC054418|Glrx|93692|glutaredoxin	AF276917|Glrx|93692|glutaredoxin
mm9_v1_chr4_-_82151657_82151695	0.42781	LHX3,4.p2	AK148573|Nfib|18028|nuclear factor I/B	Y07687|Nfib|18028|nuclear factor I/B	AK047576|Nfib|18028|nuclear factor I/B
mm9_v1_chr9_+_38280332_38280333	0.426995	LHX3,4.p2	BC150476|Olfr905|258800|olfactory receptor 905	NM_146804|Olfr905|258800|olfactory receptor 905
mm9_v1_chr13_+_83643032_83643032	0.424141	LHX3,4.p2	NM_001170537|Mef2c|17260|myocyte enhancer factor 2C	NM_025282|Mef2c|17260|myocyte enhancer factor 2C
mm9_v1_chrX_+_103222548_103222685	0.422647	LHX3,4.p2	AK017506|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK033254|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	NM_001109757|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	NM_009726|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK155643|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK171563|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK172209|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	U03434|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	U71091|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	BC141395|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide
mm9_v1_chr6_-_83486194_83486260	0.420063	LHX3,4.p2	AK146631|Actg2|11468|actin, gamma 2, smooth muscle, enteric	AK168649|Actg2|11468|actin, gamma 2, smooth muscle, enteric	BC002042|Actg2|11468|actin, gamma 2, smooth muscle, enteric	NM_009610|Actg2|11468|actin, gamma 2, smooth muscle, enteric
mm9_v1_chr10_+_103605568_103605568	0.419754	LHX3,4.p2	NM_001177535|Gm4340|100043292|predicted gene 4340
mm9_v1_chr10_+_103614078_103614078	0.419754	LHX3,4.p2	NM_001177535|Gm4340|100043292|predicted gene 4340
mm9_v1_chr4_-_19849637_19849704	0.418925	LHX3,4.p2	AK089507|Atp6v0d2|242341|ATPase, H+ transporting, lysosomal V0 subunit D2	BC087899|Atp6v0d2|242341|ATPase, H+ transporting, lysosomal V0 subunit D2	AK170578|Atp6v0d2|242341|ATPase, H+ transporting, lysosomal V0 subunit D2	AK170659|Atp6v0d2|242341|ATPase, H+ transporting, lysosomal V0 subunit D2	AB088358|Atp6v0d2|242341|ATPase, H+ transporting, lysosomal V0 subunit D2	AK170405|Atp6v0d2|242341|ATPase, H+ transporting, lysosomal V0 subunit D2	AK170072|Atp6v0d2|242341|ATPase, H+ transporting, lysosomal V0 subunit D2	AK137586|Atp6v0d2|242341|ATPase, H+ transporting, lysosomal V0 subunit D2	AY517482|Atp6v0d2|242341|ATPase, H+ transporting, lysosomal V0 subunit D2
mm9_v1_chr1_-_39608739_39608803	0.417764	LHX3,4.p2	AK020327|Rnf149|67702|ring finger protein 149
mm9_v1_chr2_+_83564607_83564841	0.410447	LHX3,4.p2	AK140647|Itgav|16410|integrin alpha V	AK080357|Itgav|16410|integrin alpha V	AK020674|Itgav|16410|integrin alpha V	AK149984|Itgav|16410|integrin alpha V	U14135|Itgav|16410|integrin alpha V	BC021600|Itgav|16410|integrin alpha V	BC133682|Itgav|16410|integrin alpha V
mm9_v1_chr15_-_56526052_56526100	0.407018	LHX3,4.p2	U52524|Has2|15117|hyaluronan synthase 2	BC080281|Has2|15117|hyaluronan synthase 2	U69695|Has2|15117|hyaluronan synthase 2	AK045020|Has2|15117|hyaluronan synthase 2	AK079729|Has2|15117|hyaluronan synthase 2	NM_008216|Has2|15117|hyaluronan synthase 2
mm9_v1_chr6_+_38542722_38542769	0.404682	LHX3,4.p2	BC002314|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)
mm9_v1_chrX_-_71491736_71491773	0.403925	LHX3,4.p2	BC038478|Flna|192176|filamin, alpha	AK089311|Flna|192176|filamin, alpha
mm9_v1_chr3_+_19869841_19869871	0.403764	LHX3,4.p2	AK160035|Cp|12870|ceruloplasmin
mm9_v1_chr9_-_57531425_57531441	0.402035	LHX3,4.p2	X04283|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	BC018298|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2
mm9_v1_chr9_-_71743854_71743929	0.400102	LHX3,4.p2	AK135376|Tcf12|21406|transcription factor 12	AK132002|Tcf12|21406|transcription factor 12	AK133958|Tcf12|21406|transcription factor 12	AK078415|Tcf12|21406|transcription factor 12
mm9_v1_chr1_-_55044032_55044295	0.398801	LHX3,4.p2	AK077993|Sf3b1|81898|splicing factor 3b, subunit 1	AK087700|Sf3b1|81898|splicing factor 3b, subunit 1
mm9_v1_chr1_-_127289729_127289773	0.398531	LHX3,4.p2	
mm9_v1_chr9_-_119213954_119213965	0.397842	LHX3,4.p2	AK031790|Oxsr1|108737|oxidative-stress responsive 1	AK075837|Oxsr1|108737|oxidative-stress responsive 1	NM_133985|Oxsr1|108737|oxidative-stress responsive 1
mm9_v1_chr9_+_89094110_89094142	0.397405	LHX3,4.p2	BC116241|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b	NM_007534|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b	BC028762|Bcl2a1a|12044|B-cell leukemia/lymphoma 2 related protein A1a	AK138369|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b	BC100462|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b	AK152200|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b
mm9_v1_chr11_-_65083442_65083498	0.394049	LHX3,4.p2	AF384055|Myocd|214384|myocardin	AY303755|Myocd|214384|myocardin	NM_145136|Myocd|214384|myocardin	NM_146386|Myocd|214384|myocardin	AK142216|Myocd|214384|myocardin
mm9_v1_chr6_+_58546610_58546665	0.392271	LHX3,4.p2	BC053730|Abcg2|26357|ATP-binding cassette, sub-family G (WHITE), member 2	NM_011920|Abcg2|26357|ATP-binding cassette, sub-family G (WHITE), member 2
mm9_v1_chr5_-_138040961_138040963	0.390379	LHX3,4.p2	AK004495|Mospd3|68929|motile sperm domain containing 3
mm9_v1_chr19_+_34175422_34175462	0.388664	LHX3,4.p2	AK019504|Lipm|78753|lipase, family member M	AK037091|Lipm|78753|lipase, family member M	NM_023903|Lipm|78753|lipase, family member M	AK037214|Lipm|78753|lipase, family member M	AK085719|Lipm|78753|lipase, family member M	BC031933|Lipm|78753|lipase, family member M
mm9_v1_chr17_-_28697643_28697658	0.388243	LHX3,4.p2	BC042935|Clps|109791|colipase, pancreatic	AF414676|Clps|109791|colipase, pancreatic	AF414677|Clps|109791|colipase, pancreatic	AK028141|Clps|109791|colipase, pancreatic	AK008635|Clps|109791|colipase, pancreatic	AK008834|Clps|109791|colipase, pancreatic	AK008839|Clps|109791|colipase, pancreatic	AK008874|Clps|109791|colipase, pancreatic	AK008879|Clps|109791|colipase, pancreatic	AK019005|Clps|109791|colipase, pancreatic	AK019047|Clps|109791|colipase, pancreatic	AK008815|Clps|109791|colipase, pancreatic	NM_025469|Clps|109791|colipase, pancreatic
mm9_v1_chr1_-_158585297_158585426	0.388056	LHX3,4.p2	AK208420|Tor3a|30935|torsin family 3, member A
mm9_v1_chr8_-_22235728_22235728	0.387034	LHX3,4.p2	AY761183|Gm14851|634825|predicted gene 14851	NM_001177482|Gm14851|634825|predicted gene 14851
mm9_v1_chr4_+_134483092_134483164	0.386231	LHX3,4.p2	
mm9_v1_chr6_+_5340417_5340708	0.385785	LHX3,4.p2	AK132068|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK018373|Asb4|65255|ankyrin repeat and SOCS box-containing 4	BC054745|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK076004|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AF155355|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK133894|Asb4|65255|ankyrin repeat and SOCS box-containing 4
mm9_v1_chr3_+_93272675_93272675	0.379443	LHX3,4.p2	AK017244|Tchhl1|71325|trichohyalin-like 1	NM_027762|Tchhl1|71325|trichohyalin-like 1
mm9_v1_chr18_+_12287232_12287358	0.379392	LHX3,4.p2	AK167309|Riok3|66878|RIO kinase 3 (yeast)	AK004748|Riok3|66878|RIO kinase 3 (yeast)	AK134327|Riok3|66878|RIO kinase 3 (yeast)	AK170882|Riok3|66878|RIO kinase 3 (yeast)	AK054308|Riok3|66878|RIO kinase 3 (yeast)	BC033271|Riok3|66878|RIO kinase 3 (yeast)	AK131635|Riok3|66878|RIO kinase 3 (yeast)	AK147074|Riok3|66878|RIO kinase 3 (yeast)	NM_024182|Riok3|66878|RIO kinase 3 (yeast)
mm9_v1_chr9_+_120868808_120869094	0.377977	LHX3,4.p2	AK208830|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK209437|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK209047|Ctnnb1|12387|catenin (cadherin associated protein), beta 1
mm9_v1_chrX_-_163645313_163645419	0.376917	LHX3,4.p2	AK205579|Tmsb4x|19241|thymosin, beta 4, X chromosome
mm9_v1_chr19_-_57290515_57290521	0.376189	LHX3,4.p2	BC141083|Ablim1|226251|actin-binding LIM protein 1	AF404774|Ablim1|226251|actin-binding LIM protein 1	NM_178688|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr11_-_106474237_106474312	0.376147	LHX3,4.p2	AK129434|Tex2|21763|testis expressed gene 2	NM_198292|Tex2|21763|testis expressed gene 2	AK168397|Tex2|21763|testis expressed gene 2
mm9_v1_chr1_-_138856866_138857085	0.375811	LHX3,4.p2	AB221629|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	BC137845|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	M81385|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	NM_030676|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2
mm9_v1_chr17_+_23797470_23797489	0.375522	LHX3,4.p2	AK133729|Ccdc64b|212733|coiled-coil domain containing 64B	AK036793|Ccdc64b|212733|coiled-coil domain containing 64B	BC038613|Ccdc64b|212733|coiled-coil domain containing 64B	NM_153784|Ccdc64b|212733|coiled-coil domain containing 64B
mm9_v1_chr6_-_39050297_39050406	0.371819	LHX3,4.p2	BC024579|Parp12|243771|poly (ADP-ribose) polymerase family, member 12
mm9_v1_chr19_+_26822892_26822948	0.370483	LHX3,4.p2	NM_026003|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	AK011935|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm9_v1_chr3_+_19408594_19408651	0.3699	LHX3,4.p2	NM_001163536|Dnajc5b|66326|DnaJ (Hsp40) homolog, subfamily C, member 5 beta	NM_025489|Dnajc5b|66326|DnaJ (Hsp40) homolog, subfamily C, member 5 beta	AK005725|Dnajc5b|66326|DnaJ (Hsp40) homolog, subfamily C, member 5 beta	AK005749|Dnajc5b|66326|DnaJ (Hsp40) homolog, subfamily C, member 5 beta	BC049579|Dnajc5b|66326|DnaJ (Hsp40) homolog, subfamily C, member 5 beta
mm9_v1_chr12_+_112783003_112783121	0.369421	LHX3,4.p2	AK218038|Eif5|217869|eukaryotic translation initiation factor 5
mm9_v1_chr18_-_35064624_35064726	0.366283	LHX3,4.p2	AK195141|Etf1|225363|eukaryotic translation termination factor 1	AK218551|Etf1|225363|eukaryotic translation termination factor 1
mm9_v1_chrX_+_54043764_54043779	0.363715	LHX3,4.p2	BC055725|Fhl1|14199|four and a half LIM domains 1
mm9_v1_chr9_+_43552516_43552726	0.3613	LHX3,4.p2	BC060694|Pvrl1|58235|poliovirus receptor-related 1	NM_021424|Pvrl1|58235|poliovirus receptor-related 1	AF297665|Pvrl1|58235|poliovirus receptor-related 1	AF239762|Pvrl1|58235|poliovirus receptor-related 1	AF270977|Pvrl1|58235|poliovirus receptor-related 1
mm9_v1_chr16_-_17144515_17144515	0.360902	LHX3,4.p2	AK015290|Ccdc116|76872|coiled-coil domain containing 116	NM_029779|Ccdc116|76872|coiled-coil domain containing 116
mm9_v1_chr18_+_70728508_70728589	0.360603	LHX3,4.p2	AK082825|Mbd2|17191|methyl-CpG binding domain protein 2
mm9_v1_chr3_+_95466898_95466910	0.360076	LHX3,4.p2	
mm9_v1_chr5_-_92776160_92776261	0.355572	LHX3,4.p2	AK152838|Cxcl10|15945|chemokine (C-X-C motif) ligand 10
mm9_v1_chrX_-_91368427_91368500	0.355314	LHX3,4.p2	BC028506|Zfx|22764|zinc finger protein X-linked	M32308|Zfx|22764|zinc finger protein X-linked
mm9_v1_chr16_+_22920486_22920556	0.354812	LHX3,4.p2	AY138460|Fetub|59083|fetuin beta	BC018341|Fetub|59083|fetuin beta
mm9_v1_chr16_-_45844343_45844346	0.354354	LHX3,4.p2	AK049595|Phldb2|208177|pleckstrin homology-like domain, family B, member 2	BC050915|Phldb2|208177|pleckstrin homology-like domain, family B, member 2	BC060683|Phldb2|208177|pleckstrin homology-like domain, family B, member 2
mm9_v1_chr11_+_82988687_82988701	0.354071	LHX3,4.p2	BC044865|Slfn4|20558|schlafen 4	NM_011410|Slfn4|20558|schlafen 4	AK137559|Slfn4|20558|schlafen 4	AK137689|Slfn4|20558|schlafen 4
mm9_v1_chr15_+_81575472_81575548	0.352849	LHX3,4.p2	AK165492|Zc3h7b|20286|zinc finger CCCH type containing 7B	AK147978|Zc3h7b|20286|zinc finger CCCH type containing 7B	AK147484|Zc3h7b|20286|zinc finger CCCH type containing 7B	BC059923|Zc3h7b|20286|zinc finger CCCH type containing 7B	AK171949|Zc3h7b|20286|zinc finger CCCH type containing 7B
mm9_v1_chr9_-_44550590_44550598	0.351713	LHX3,4.p2	
mm9_v1_chr18_+_69843588_69843609	0.348153	LHX3,4.p2	AK017365|Tcf4|21413|transcription factor 4
mm9_v1_chr9_+_43118845_43118930	0.347976	LHX3,4.p2	NM_023655|Trim29|72169|tripartite motif-containing 29	BC027353|Trim29|72169|tripartite motif-containing 29
mm9_v1_chr1_-_93308194_93308203	0.347881	LHX3,4.p2	
mm9_v1_chr3_+_159502646_159502709	0.347288	LHX3,4.p2	BC075615|Wls|68151|wntless homolog (Drosophila)	NM_026582|Wls|68151|wntless homolog (Drosophila)	AK029053|Wls|68151|wntless homolog (Drosophila)	AK044810|Wls|68151|wntless homolog (Drosophila)	AK019886|Wls|68151|wntless homolog (Drosophila)	AK029104|Wls|68151|wntless homolog (Drosophila)	AK029315|Wls|68151|wntless homolog (Drosophila)	AK031444|Wls|68151|wntless homolog (Drosophila)	AK049842|Wls|68151|wntless homolog (Drosophila)	AK128912|Wls|68151|wntless homolog (Drosophila)	AK159207|Wls|68151|wntless homolog (Drosophila)	AK159977|Wls|68151|wntless homolog (Drosophila)	AK077407|Wls|68151|wntless homolog (Drosophila)
mm9_v1_chr8_-_42300477_42300498	0.346045	LHX3,4.p2	BC021946|Fgl1|234199|fibrinogen-like protein 1	BC029734|Fgl1|234199|fibrinogen-like protein 1
mm9_v1_chr1_+_169548381_169548439	0.344109	LHX3,4.p2	NM_001159731|Rxrg|20183|retinoid X receptor gamma	S62952|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr17_-_47147441_47147496	0.343988	LHX3,4.p2	BC075642|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2	AK147445|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2	AK143202|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2	NM_001177374|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2	NM_146078|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2
mm9_v1_chr16_-_21995441_21995614	0.343342	LHX3,4.p2	AY093499|Liph|239759|lipase, member H	AK048150|Liph|239759|lipase, member H	NM_153404|Liph|239759|lipase, member H	BC037489|Liph|239759|lipase, member H	AK161067|Liph|239759|lipase, member H	AK035498|Liph|239759|lipase, member H	AK134352|Liph|239759|lipase, member H	AK136503|Liph|239759|lipase, member H	AK162492|Liph|239759|lipase, member H	AK137278|Liph|239759|lipase, member H	NM_001083894|Liph|239759|lipase, member H
mm9_v1_chr10_+_100055019_100055050	0.343277	LHX3,4.p2	NM_001081246|1700017N19Rik|66605|RIKEN cDNA 1700017N19 gene	AK014917|1700017N19Rik|66605|RIKEN cDNA 1700017N19 gene	AK006074|1700017N19Rik|66605|RIKEN cDNA 1700017N19 gene
mm9_v1_chr2_-_106899807_106899807	0.342584	LHX3,4.p2	AK017593|Fshb|14308|follicle stimulating hormone beta	BC061159|Fshb|14308|follicle stimulating hormone beta	NM_008045|Fshb|14308|follicle stimulating hormone beta
mm9_v1_chr6_-_66509701_66509701	0.339498	LHX3,4.p2	AK029205|Vmn1r32|171188|vomeronasal 1 receptor 32	NM_134170|Vmn1r32|171188|vomeronasal 1 receptor 32
mm9_v1_chr11_-_103265172_103265227	0.338099	LHX3,4.p2	AK154703|Plekhm1|353047|pleckstrin homology domain containing, family M (with RUN domain) member 1
mm9_v1_chr4_+_115511802_115511871	0.338055	LHX3,4.p2	AK141298|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	AK010697|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	AK169982|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	Y11091|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	AK155934|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	NM_021461|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	BC021369|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1
mm9_v1_chr10_+_63283802_63283803	0.337894	LHX3,4.p2	AK015241|Ctnna3|216033|catenin (cadherin associated protein), alpha 3	NM_001164519|Ctnna3|216033|catenin (cadherin associated protein), alpha 3	DQ380430|Ctnna3|216033|catenin (cadherin associated protein), alpha 3
mm9_v1_chr6_-_141895336_141895482	0.335453	LHX3,4.p2	AK165360|Slco1a1|28248|solute carrier organic anion transporter family, member 1a1	NM_013797|Slco1a1|28248|solute carrier organic anion transporter family, member 1a1
mm9_v1_chr5_+_130663030_130663049	0.334835	LHX3,4.p2	AK044568|Rabgef1|56715|RAB guanine nucleotide exchange factor (GEF) 1	BC018229|Rabgef1|56715|RAB guanine nucleotide exchange factor (GEF) 1	NM_019983|Rabgef1|56715|RAB guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr6_+_66846377_66846490	0.333272	LHX3,4.p2	NM_001177556|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	NM_001177557|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	NM_001177559|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	NM_001177560|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	NM_025278|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK005561|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	BC040685|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK162342|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK166035|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK159872|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK148765|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK033422|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12
mm9_v1_chrX_+_54032914_54032920	0.332383	LHX3,4.p2	BC029024|Fhl1|14199|four and a half LIM domains 1
mm9_v1_chr16_-_26371711_26371924	0.33095	LHX3,4.p2	CT010299|Cldn1|12737|claudin 1	EU076705|Cldn1|12737|claudin 1	BC008536|Cldn1|12737|claudin 1	AF072127|Cldn1|12737|claudin 1	AK054207|Cldn1|12737|claudin 1	BC002003|Cldn1|12737|claudin 1	AK036762|Cldn1|12737|claudin 1	AK028428|Cldn1|12737|claudin 1	AK081601|Cldn1|12737|claudin 1	AK036780|Cldn1|12737|claudin 1	AK040604|Cldn1|12737|claudin 1	NM_016674|Cldn1|12737|claudin 1
mm9_v1_chr11_+_46624300_46624301	0.330686	LHX3,4.p2	AK080212|Timd4|276891|T-cell immunoglobulin and mucin domain containing 4	NM_178759|Timd4|276891|T-cell immunoglobulin and mucin domain containing 4	AK046560|Timd4|276891|T-cell immunoglobulin and mucin domain containing 4	AK079787|Timd4|276891|T-cell immunoglobulin and mucin domain containing 4	AK080042|Timd4|276891|T-cell immunoglobulin and mucin domain containing 4	AY376716|Timd4|276891|T-cell immunoglobulin and mucin domain containing 4	AY376717|Timd4|276891|T-cell immunoglobulin and mucin domain containing 4
mm9_v1_chr11_-_53236630_53236639	0.330554	LHX3,4.p2	BC089593|Leap2|259301|liver-expressed antimicrobial peptide 2	AJ409055|Leap2|259301|liver-expressed antimicrobial peptide 2	NM_153069|Leap2|259301|liver-expressed antimicrobial peptide 2
mm9_v1_chr1_+_75432535_75432608	0.326243	LHX3,4.p2	AK144311|Gmppa|69080|GDP-mannose pyrophosphorylase A	AK150473|Gmppa|69080|GDP-mannose pyrophosphorylase A	AK182835|Gmppa|69080|GDP-mannose pyrophosphorylase A	AK198797|Gmppa|69080|GDP-mannose pyrophosphorylase A	BC008116|Gmppa|69080|GDP-mannose pyrophosphorylase A
mm9_v1_chr13_+_49704471_49704523	0.325459	LHX3,4.p2	AK075638|Ogn|18295|osteoglycin	AK163772|Ogn|18295|osteoglycin	D31951|Ogn|18295|osteoglycin	BC021939|Ogn|18295|osteoglycin
mm9_v1_chr11_-_69362609_69362611	0.324806	LHX3,4.p2	NM_001081330|Dnahc2|327954|dynein, axonemal, heavy chain 2	AK051796|Dnahc2|327954|dynein, axonemal, heavy chain 2
mm9_v1_chr5_+_121913189_121913205	0.324543	LHX3,4.p2	NM_001161626|Tmem116|77462|transmembrane protein 116	NM_001161627|Tmem116|77462|transmembrane protein 116	BC019151|Tmem116|77462|transmembrane protein 116
mm9_v1_chr11_+_69727523_69727631	0.32338	LHX3,4.p2	AF153696|Gps2|56310|G protein pathway suppressor 2
mm9_v1_chr13_-_25112189_25112247	0.323051	LHX3,4.p2	NM_001013389|Mrs2|380836|MRS2 magnesium homeostasis factor homolog (S. cerevisiae)
mm9_v1_chr1_-_69154627_69154642	0.322821	LHX3,4.p2	AK144050|Erbb4|13869|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	NM_010154|Erbb4|13869|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)
mm9_v1_chr2_-_13413502_13413502	0.322022	LHX3,4.p2	NM_001081084|Cubn|65969|cubilin (intrinsic factor-cobalamin receptor)
mm9_v1_chr16_-_16829386_16829548	0.31945	LHX3,4.p2	AF173866|Spag6|50525|sperm associated antigen 6	BC090660|Spag6|50525|sperm associated antigen 6	AK053966|Spag6|50525|sperm associated antigen 6	AK005732|Spag6|50525|sperm associated antigen 6	BC100455|Spag6|50525|sperm associated antigen 6	AK054199|Spag6|50525|sperm associated antigen 6	NM_015773|Spag6|50525|sperm associated antigen 6	AK164680|Spag6|50525|sperm associated antigen 6
mm9_v1_chr2_+_10292073_10292144	0.316615	LHX3,4.p2	AK147557|Sfmbt2|353282|Scm-like with four mbt domains 2	NM_001198808|Sfmbt2|353282|Scm-like with four mbt domains 2	AK049505|Sfmbt2|353282|Scm-like with four mbt domains 2	AK168444|Sfmbt2|353282|Scm-like with four mbt domains 2
mm9_v1_chr19_+_56362397_56362451	0.315237	LHX3,4.p2	AK132407|Habp2|226243|hyaluronic acid binding protein 2	AK128915|Habp2|226243|hyaluronic acid binding protein 2	AK149504|Habp2|226243|hyaluronic acid binding protein 2	BC031775|Habp2|226243|hyaluronic acid binding protein 2	NM_146101|Habp2|226243|hyaluronic acid binding protein 2
mm9_v1_chr2_+_109120894_109121025	0.31434	LHX3,4.p2	BC016095|Kif18a|228421|kinesin family member 18A	NM_139303|Kif18a|228421|kinesin family member 18A	AK049197|Kif18a|228421|kinesin family member 18A	AK135735|Kif18a|228421|kinesin family member 18A	AK082913|Kif18a|228421|kinesin family member 18A	AK041469|Kif18a|228421|kinesin family member 18A	AK044795|Kif18a|228421|kinesin family member 18A	AK164649|Kif18a|228421|kinesin family member 18A	AK036722|Kif18a|228421|kinesin family member 18A	AK164114|Kif18a|228421|kinesin family member 18A
mm9_v1_chr11_+_52202137_52202376	0.31415	LHX3,4.p2	AK217498|Vdac1|22333|voltage-dependent anion channel 1	AK210208|Vdac1|22333|voltage-dependent anion channel 1	AK215454|Vdac1|22333|voltage-dependent anion channel 1	AK207573|Vdac1|22333|voltage-dependent anion channel 1
mm9_v1_chr7_+_77510266_77510283	0.311088	LHX3,4.p2	AK045070|B130024G19Rik|434198|RIKEN cDNA B130024G19 gene
mm9_v1_chr17_+_28829512_28829512	0.310064	LHX3,4.p2	AK151348|Mapk14|26416|mitogen-activated protein kinase 14	AK153025|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168513|Mapk14|26416|mitogen-activated protein kinase 14
mm9_v1_chr12_-_32017267_32017279	0.309144	LHX3,4.p2	AK209175|Dld|13382|dihydrolipoamide dehydrogenase
mm9_v1_chr12_-_55896648_55896721	0.307504	LHX3,4.p2	AK011640|Snx6|72183|sorting nexin 6	AK013158|Snx6|72183|sorting nexin 6	NM_026998|Snx6|72183|sorting nexin 6	BC061028|Snx6|72183|sorting nexin 6
mm9_v1_chr4_+_115236321_115236321	0.307325	LHX3,4.p2	NM_201640|Cyp4a31|666168|cytochrome P450, family 4, subfamily a, polypeptide 31
mm9_v1_chr14_-_103379725_103379759	0.306872	LHX3,4.p2	AK086988|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK032276|Kctd12|239217|potassium channel tetramerisation domain containing 12
mm9_v1_chr19_+_23241546_23241602	0.306611	LHX3,4.p2	AK009928|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr8_-_87297283_87297318	0.306068	LHX3,4.p2	BC090626|Nfix|18032|nuclear factor I/X
mm9_v1_chr15_+_61817102_61817119	0.303145	LHX3,4.p2	AK087961|Myc|17869|myelocytomatosis oncogene	AK133952|Myc|17869|myelocytomatosis oncogene
mm9_v1_chr4_-_43834304_43834304	0.302172	LHX3,4.p2	BC101957|Olfr156|29846|olfactory receptor 156	BC101961|Olfr156|29846|olfactory receptor 156	BC103551|Olfr156|29846|olfactory receptor 156	BC104727|Olfr156|29846|olfactory receptor 156	NM_019474|Olfr156|29846|olfactory receptor 156
mm9_v1_chr2_+_152452736_152452765	0.300732	LHX3,4.p2	AK084460|Rem1|19700|rad and gem related GTP binding protein 1	AK053133|Rem1|19700|rad and gem related GTP binding protein 1	NM_009047|Rem1|19700|rad and gem related GTP binding protein 1	U91601|Rem1|19700|rad and gem related GTP binding protein 1
mm9_v1_chr8_-_3748926_3748983	0.300109	LHX3,4.p2	AK171639|Cd209a|170786|CD209a antigen	AF373408|Cd209a|170786|CD209a antigen	AF374470|Cd209a|170786|CD209a antigen	BC111095|Cd209a|170786|CD209a antigen	AK054139|Cd209a|170786|CD209a antigen	AY049062|Cd209a|170786|CD209a antigen	NM_133238|Cd209a|170786|CD209a antigen
mm9_v1_chr14_-_26588341_26588548	0.298152	LHX3,4.p2	NM_001101433|Zcchc24|71918|zinc finger, CCHC domain containing 24	BC147263|Zcchc24|71918|zinc finger, CCHC domain containing 24	BC147264|Zcchc24|71918|zinc finger, CCHC domain containing 24
mm9_v1_chr3_+_66023884_66023904	0.298103	LHX3,4.p2	X83601|Ptx3|19288|pentraxin related gene
mm9_v1_chr8_+_22274328_22274385	0.29755	LHX3,4.p2	NM_001177485|Gm15284|100038927|predicted gene 15284	AJ564869|Defa-rs2|13222|defensin, alpha, related sequence 2
mm9_v1_chr11_-_106646226_106646242	0.297528	LHX3,4.p2	AK013106|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr10_-_53638995_53639134	0.296322	LHX3,4.p2	AK204950|Man1a|17155|mannosidase 1, alpha	AK192972|Man1a|17155|mannosidase 1, alpha	AK191835|Man1a|17155|mannosidase 1, alpha	AK196316|Man1a|17155|mannosidase 1, alpha	AK196883|Man1a|17155|mannosidase 1, alpha	AK201818|Man1a|17155|mannosidase 1, alpha	AK211829|Man1a|17155|mannosidase 1, alpha
mm9_v1_chr10_-_85474581_85474639	0.296294	LHX3,4.p2	BC112376|Bpil2|270757|bactericidal/permeability-increasing protein-like 2	AK028764|Bpil2|270757|bactericidal/permeability-increasing protein-like 2	NM_177772|Bpil2|270757|bactericidal/permeability-increasing protein-like 2	AK132518|Bpil2|270757|bactericidal/permeability-increasing protein-like 2
mm9_v1_chr19_+_30307417_30307431	0.29468	LHX3,4.p2	AK149484|Mbl2|17195|mannose-binding lectin (protein C) 2	S42294|Mbl2|17195|mannose-binding lectin (protein C) 2	BC010760|Mbl2|17195|mannose-binding lectin (protein C) 2
mm9_v1_chr7_-_116875215_116875245	0.29385	LHX3,4.p2	AJ277605|Ascl3|56787|achaete-scute complex homolog 3 (Drosophila)	AB046448|Ascl3|56787|achaete-scute complex homolog 3 (Drosophila)	BC104347|Ascl3|56787|achaete-scute complex homolog 3 (Drosophila)	BC104346|Ascl3|56787|achaete-scute complex homolog 3 (Drosophila)	NM_020051|Ascl3|56787|achaete-scute complex homolog 3 (Drosophila)
mm9_v1_chr11_-_51414445_51414449	0.292762	LHX3,4.p2	
mm9_v1_chr19_+_30307446_30307456	0.292323	LHX3,4.p2	D11440|Mbl2|17195|mannose-binding lectin (protein C) 2	NM_010776|Mbl2|17195|mannose-binding lectin (protein C) 2
mm9_v1_chr9_+_54828686_54828686	0.290622	LHX3,4.p2	NM_176844|Chrna5|110835|cholinergic receptor, nicotinic, alpha polypeptide 5
mm9_v1_chr12_+_34613289_34613297	0.290433	LHX3,4.p2	AF517121|Ferd3l|114712|Fer3-like (Drosophila)	NM_033522|Ferd3l|114712|Fer3-like (Drosophila)	BC111576|Ferd3l|114712|Fer3-like (Drosophila)
mm9_v1_chr5_+_119214935_119215085	0.286554	LHX3,4.p2	AK083611|Med13l|76199|mediator complex subunit 13-like
mm9_v1_chr1_+_75432496_75432530	0.285644	LHX3,4.p2	NM_133708|Gmppa|69080|GDP-mannose pyrophosphorylase A	AK007463|Gmppa|69080|GDP-mannose pyrophosphorylase A
mm9_v1_chr17_-_33783578_33783579	0.282548	LHX3,4.p2	AK150477|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M
mm9_v1_chr19_-_34240392_34240542	0.282103	LHX3,4.p2	BC003460|Ankrd22|52024|ankyrin repeat domain 22	AK017408|Ankrd22|52024|ankyrin repeat domain 22	AK037242|Ankrd22|52024|ankyrin repeat domain 22	AK017360|Ankrd22|52024|ankyrin repeat domain 22	NM_024204|Ankrd22|52024|ankyrin repeat domain 22	AK012869|Ankrd22|52024|ankyrin repeat domain 22
mm9_v1_chr8_+_42416046_42416071	0.280722	LHX3,4.p2	AK040482|Pcm1|18536|pericentriolar material 1
mm9_v1_chr17_+_19499098_19499098	0.279465	LHX3,4.p2	NM_001104551|Vmn2r99|665376|vomeronasal 2, receptor 99
mm9_v1_chrX_+_54032858_54032889	0.278246	LHX3,4.p2	NM_001077362|Fhl1|14199|four and a half LIM domains 1
mm9_v1_chr19_-_20465158_20465166	0.274523	LHX3,4.p2	AK167612|Anxa1|16952|annexin A1	AK171422|Anxa1|16952|annexin A1	NM_010730|Anxa1|16952|annexin A1	AK002681|Anxa1|16952|annexin A1	AK037064|Anxa1|16952|annexin A1	AK140838|Anxa1|16952|annexin A1	AK150564|Anxa1|16952|annexin A1	AK150718|Anxa1|16952|annexin A1	AK153156|Anxa1|16952|annexin A1	AK153490|Anxa1|16952|annexin A1	AK154568|Anxa1|16952|annexin A1	AK170612|Anxa1|16952|annexin A1	AK049455|Anxa1|16952|annexin A1
mm9_v1_chr9_-_113617224_113617390	0.274291	LHX3,4.p2	AJ005073|Pdcd6ip|18571|programmed cell death 6 interacting protein	AJ005074|Pdcd6ip|18571|programmed cell death 6 interacting protein	BC051123|Pdcd6ip|18571|programmed cell death 6 interacting protein	BC026823|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK167574|Pdcd6ip|18571|programmed cell death 6 interacting protein	AF119955|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK029827|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK129340|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK147736|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK031256|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK033943|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK145893|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK169704|Pdcd6ip|18571|programmed cell death 6 interacting protein	NM_001164677|Pdcd6ip|18571|programmed cell death 6 interacting protein	NM_001164678|Pdcd6ip|18571|programmed cell death 6 interacting protein	NM_011052|Pdcd6ip|18571|programmed cell death 6 interacting protein
mm9_v1_chr5_-_100845171_100845280	0.272903	LHX3,4.p2	BC043942|Sec31a|69162|Sec31 homolog A (S. cerevisiae)	AK134681|Sec31a|69162|Sec31 homolog A (S. cerevisiae)	AK143455|Sec31a|69162|Sec31 homolog A (S. cerevisiae)	NM_026969|Sec31a|69162|Sec31 homolog A (S. cerevisiae)
mm9_v1_chr18_-_46440360_46440503	0.272683	LHX3,4.p2	AK028188|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	AK170240|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	BC141021|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	AK081731|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	NM_172627|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit
mm9_v1_chr4_-_70071302_70071482	0.27252	LHX3,4.p2	BC086696|Cdk5rap2|214444|CDK5 regulatory subunit associated protein 2	AK013550|Cdk5rap2|214444|CDK5 regulatory subunit associated protein 2	AK129411|Cdk5rap2|214444|CDK5 regulatory subunit associated protein 2	NM_145990|Cdk5rap2|214444|CDK5 regulatory subunit associated protein 2	BC079888|Cdk5rap2|214444|CDK5 regulatory subunit associated protein 2
mm9_v1_chr19_-_17414057_17414057	0.272321	LHX3,4.p2	NM_001136484|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	U19265|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2
mm9_v1_chr7_+_134732211_134732297	0.268078	LHX3,4.p2	NM_172281|Rnf40|233900|ring finger protein 40	AK089805|Rnf40|233900|ring finger protein 40	AK154982|Rnf40|233900|ring finger protein 40	AK171462|Rnf40|233900|ring finger protein 40	AK129184|Rnf40|233900|ring finger protein 40	BC038348|Rnf40|233900|ring finger protein 40
mm9_v1_chr10_+_90564953_90564975	0.266792	LHX3,4.p2	AK209988|Ikbip|67454|IKBKB interacting protein
mm9_v1_chr2_+_143768541_143768569	0.266759	LHX3,4.p2	AK011761|Dstn|56431|destrin
mm9_v1_chr7_-_35833597_35833632	0.265586	LHX3,4.p2	AK087103|Cebpg|12611|CCAAT/enhancer binding protein (C/EBP), gamma
mm9_v1_chr5_-_124053691_124053818	0.265251	LHX3,4.p2	AK030387|Clip1|56430|CAP-GLY domain containing linker protein 1
mm9_v1_chr4_-_109125244_109125254	0.265209	LHX3,4.p2	AK139182|Rnf11|29864|ring finger protein 11
mm9_v1_chr8_-_71601126_71601131	0.2651	LHX3,4.p2	AK076433|Slc18a1|110877|solute carrier family 18 (vesicular monoamine), member 1	AK144034|Slc18a1|110877|solute carrier family 18 (vesicular monoamine), member 1
mm9_v1_chr4_+_146237770_146237770	0.264607	LHX3,4.p2	NM_027285|1700029I01Rik|70005|RIKEN cDNA 1700029I01 gene
mm9_v1_chrX_+_102959815_102959879	0.260864	LHX3,4.p2	BC132641|Fgf16|80903|fibroblast growth factor 16	BC137993|Fgf16|80903|fibroblast growth factor 16	NM_030614|Fgf16|80903|fibroblast growth factor 16	AB049219|Fgf16|80903|fibroblast growth factor 16	AF292104|Fgf16|80903|fibroblast growth factor 16
mm9_v1_chr18_-_3281709_3281744	0.25923	LHX3,4.p2	AJ292222|Crem|12916|cAMP responsive element modulator	AJ311667|Crem|12916|cAMP responsive element modulator	S67786|Crem|12916|cAMP responsive element modulator	NM_001110854|Crem|12916|cAMP responsive element modulator	NM_001110855|Crem|12916|cAMP responsive element modulator
mm9_v1_chr7_-_38804503_38804582	0.259046	LHX3,4.p2	AK160558|C80913|19777|expressed sequence C80913	AK155994|C80913|19777|expressed sequence C80913	AK166566|C80913|19777|expressed sequence C80913	AK170929|C80913|19777|expressed sequence C80913	NM_011274|C80913|19777|expressed sequence C80913
mm9_v1_chr1_+_162917586_162917638	0.258732	LHX3,4.p2	BC033377|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	AK050295|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chr13_-_104623606_104623708	0.257664	LHX3,4.p2	BC005691|Erbb2ip|59079|Erbb2 interacting protein
mm9_v1_chr15_-_12479631_12479703	0.25763	LHX3,4.p2	AK021207|Pdzd2|68070|PDZ domain containing 2
mm9_v1_chr13_-_101222818_101222823	0.257112	LHX3,4.p2	AF135491|Naip1|17940|NLR family, apoptosis inhibitory protein 1	NM_008670|Naip1|17940|NLR family, apoptosis inhibitory protein 1	BC047215|Naip1|17940|NLR family, apoptosis inhibitory protein 1
mm9_v1_chr4_-_19849712_19849751	0.256165	LHX3,4.p2	AY145896|Atp6v0d2|242341|ATPase, H+ transporting, lysosomal V0 subunit D2	NM_175406|Atp6v0d2|242341|ATPase, H+ transporting, lysosomal V0 subunit D2	AK075745|Atp6v0d2|242341|ATPase, H+ transporting, lysosomal V0 subunit D2
mm9_v1_chr11_-_65083322_65083378	0.254988	LHX3,4.p2	BC141281|Myocd|214384|myocardin	BC145607|Myocd|214384|myocardin
mm9_v1_chr17_-_47147501_47147513	0.254346	LHX3,4.p2	AK083320|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2	AK134196|C79242|98068|expressed sequence C79242
mm9_v1_chrX_-_43809499_43809524	0.25395	LHX3,4.p2	NM_001085510|Gm4987|245405|predicted gene 4987
mm9_v1_chr9_-_70782366_70782427	0.253683	LHX3,4.p2	AY228765|Lipc|15450|lipase, hepatic	X58426|Lipc|15450|lipase, hepatic	BC094050|Lipc|15450|lipase, hepatic
mm9_v1_chr1_-_133173495_133173524	0.253422	LHX3,4.p2	BC037446|Ikbke|56489|inhibitor of kappaB kinase epsilon
mm9_v1_chr12_+_33987379_33987464	0.25283	LHX3,4.p2	NM_001033436|Atxn7l1|380753|ataxin 7-like 1	AK156016|Atxn7l1|380753|ataxin 7-like 1	BC147479|Atxn7l1|380753|ataxin 7-like 1	BC147483|Atxn7l1|380753|ataxin 7-like 1
mm9_v1_chr5_-_100465086_100465197	0.252485	LHX3,4.p2	AK011143|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like
mm9_v1_chr9_+_69855789_69855998	0.25179	LHX3,4.p2	AF071429|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK161900|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2
mm9_v1_chr16_-_36808790_36808790	0.249019	LHX3,4.p2	AB081298|Eaf2|106389|ELL associated factor 2	NM_001113405|Eaf2|106389|ELL associated factor 2
mm9_v1_chr1_-_97564064_97564129	0.246474	LHX3,4.p2	AK041723|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	AK003690|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm9_v1_chr2_+_164323024_164323043	0.246369	LHX3,4.p2	NM_133779|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK049171|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK049990|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK019717|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK090020|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK155057|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK153462|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK153464|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK044499|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK157226|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T
mm9_v1_chr2_-_34916915_34916960	0.24404	LHX3,4.p2	M35525|Hc|15139|hemolytic complement	M35526|Hc|15139|hemolytic complement	AK080166|Hc|15139|hemolytic complement	NM_010406|Hc|15139|hemolytic complement
mm9_v1_chr10_-_124765435_124765590	0.243456	LHX3,4.p2	BC117803|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7	BC117804|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7	BC126960|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7	BC089606|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7	AF058054|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7	NM_011391|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7
mm9_v1_chr19_-_4825413_4825555	0.242418	LHX3,4.p2	
mm9_v1_chr10_-_126719287_126719357	0.242181	LHX3,4.p2	AK034474|Mbd6|110962|methyl-CpG binding domain protein 6
mm9_v1_chr12_-_8546350_8546371	0.239875	LHX3,4.p2	AY795939|Slc7a15|328059|solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	NM_001038660|Slc7a15|328059|solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	AK008024|Slc7a15|328059|solute carrier family 7 (cationic amino acid transporter, y+ system), member 15
mm9_v1_chr8_-_95861063_95861110	0.238789	LHX3,4.p2	AK162328|Ces1g|12623|carboxylesterase 1G	BC026897|Ces1g|12623|carboxylesterase 1G	Y12887|Ces1g|12623|carboxylesterase 1G	AK136446|Ces1g|12623|carboxylesterase 1G	AK136588|Ces1g|12623|carboxylesterase 1G	AK149446|Ces1g|12623|carboxylesterase 1G	NM_021456|Ces1g|12623|carboxylesterase 1G
mm9_v1_chr17_+_29178865_29178883	0.236198	LHX3,4.p2	
mm9_v1_chr12_-_80007923_80007953	0.235469	LHX3,4.p2	BC028902|Plek2|27260|pleckstrin 2	NM_013738|Plek2|27260|pleckstrin 2	AF170564|Plek2|27260|pleckstrin 2
mm9_v1_chrX_-_97790207_97790207	0.233483	LHX3,4.p2	AK076364|P2ry4|57385|pyrimidinergic receptor P2Y, G-protein coupled, 4	NM_020621|P2ry4|57385|pyrimidinergic receptor P2Y, G-protein coupled, 4
mm9_v1_chr12_+_45412878_45412942	0.230586	LHX3,4.p2	AK033938|Pnpla8|67452|patatin-like phospholipase domain containing 8
mm9_v1_chr1_-_187153212_187153265	0.227658	LHX3,4.p2	AK164435|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK051778|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK088965|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK036182|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK008042|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK043729|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	BC052403|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK050358|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK166832|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial
mm9_v1_chr1_-_95342228_95342278	0.224836	LHX3,4.p2	AK048780|Hdlbp|110611|high density lipoprotein (HDL) binding protein	AK161663|Hdlbp|110611|high density lipoprotein (HDL) binding protein	AK132355|Hdlbp|110611|high density lipoprotein (HDL) binding protein
mm9_v1_chr18_+_35776026_35776084	0.22457	LHX3,4.p2	AK012839|Paip2|67869|polyadenylate-binding protein-interacting protein 2
mm9_v1_chr16_+_30065419_30065442	0.223817	LHX3,4.p2	AK133538|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	AK132536|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	BC018375|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	BC051428|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	NM_008235|Hes1|15205|hairy and enhancer of split 1 (Drosophila)
mm9_v1_chr6_-_128572808_128572951	0.220809	LHX3,4.p2	X64723|Klrb1a|17057|killer cell lectin-like receptor subfamily B member 1A	DQ237927|Klrb1a|17057|killer cell lectin-like receptor subfamily B member 1A	M77753|Klrb1a|17057|killer cell lectin-like receptor subfamily B member 1A	AF354261|Klrb1a|17057|killer cell lectin-like receptor subfamily B member 1A	AF354262|Klrb1a|17057|killer cell lectin-like receptor subfamily B member 1A	BC120707|Klrb1a|17057|killer cell lectin-like receptor subfamily B member 1A	BC145045|Klrb1a|17057|killer cell lectin-like receptor subfamily B member 1A	M77676|Klrb1a|17057|killer cell lectin-like receptor subfamily B member 1A	NM_001159902|Klrb1a|17057|killer cell lectin-like receptor subfamily B member 1A	NM_010737|Klrb1a|17057|killer cell lectin-like receptor subfamily B member 1A
mm9_v1_chr7_-_27951724_27951820	0.218129	LHX3,4.p2	AF453879|Egln2|112406|EGL nine homolog 2 (C. elegans)	BC023299|Egln2|112406|EGL nine homolog 2 (C. elegans)	BC086764|Egln2|112406|EGL nine homolog 2 (C. elegans)	AK075582|Egln2|112406|EGL nine homolog 2 (C. elegans)	AK159206|Egln2|112406|EGL nine homolog 2 (C. elegans)	AK167477|Egln2|112406|EGL nine homolog 2 (C. elegans)	AK152223|Egln2|112406|EGL nine homolog 2 (C. elegans)	AK152056|Egln2|112406|EGL nine homolog 2 (C. elegans)	AJ310547|Egln2|112406|EGL nine homolog 2 (C. elegans)	NM_053208|Egln2|112406|EGL nine homolog 2 (C. elegans)
mm9_v1_chr16_-_46120221_46120363	0.213158	LHX3,4.p2	AY029156|Cd96|84544|CD96 antigen	AK040329|Cd96|84544|CD96 antigen	BC052865|Cd96|84544|CD96 antigen	AK154076|Cd96|84544|CD96 antigen	AK156470|Cd96|84544|CD96 antigen	NM_032465|Cd96|84544|CD96 antigen	AK040539|Cd96|84544|CD96 antigen
mm9_v1_chr19_-_11698132_11698208	0.212557	LHX3,4.p2	BC139323|Ms4a2|14126|membrane-spanning 4-domains, subfamily A, member 2	BC139324|Ms4a2|14126|membrane-spanning 4-domains, subfamily A, member 2	J05019|Ms4a2|14126|membrane-spanning 4-domains, subfamily A, member 2	NM_013516|Ms4a2|14126|membrane-spanning 4-domains, subfamily A, member 2	AK161121|Ms4a2|14126|membrane-spanning 4-domains, subfamily A, member 2	AK144021|Ms4a2|14126|membrane-spanning 4-domains, subfamily A, member 2
mm9_v1_chr3_+_66023808_66023844	0.208751	LHX3,4.p2	NM_008987|Ptx3|19288|pentraxin related gene	BC022176|Ptx3|19288|pentraxin related gene
mm9_v1_chr11_-_99505377_99505402	0.206995	LHX3,4.p2	BC115508|Krtap4-7|76444|keratin associated protein 4-7	BC115509|Krtap4-7|76444|keratin associated protein 4-7	AK009665|Krtap4-7|76444|keratin associated protein 4-7	NM_029613|Krtap4-7|76444|keratin associated protein 4-7
mm9_v1_chr11_+_115196047_115196130	0.206569	LHX3,4.p2	NM_027132|Otop3|69602|otopetrin 3	AB087505|Otop3|69602|otopetrin 3	AK043266|Otop3|69602|otopetrin 3	BC145613|Otop3|69602|otopetrin 3	BC150803|Otop3|69602|otopetrin 3
mm9_v1_chr5_+_28168486_28168486	0.204017	LHX3,4.p2	NM_008314|Htr5a|15563|5-hydroxytryptamine (serotonin) receptor 5A
mm9_v1_chr5_-_51848420_51848454	0.203226	LHX3,4.p2	AK032149|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK082685|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK043827|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm9_v1_chr7_-_11242322_11242322	0.2026	LHX3,4.p2	NM_001110020|Gm6900|628596|predicted gene 6900
mm9_v1_chr16_+_20097626_20097705	0.202536	LHX3,4.p2	NM_029436|Klhl24|75785|kelch-like 24 (Drosophila)	AK015239|Klhl24|75785|kelch-like 24 (Drosophila)	AK044892|Klhl24|75785|kelch-like 24 (Drosophila)
mm9_v1_chr8_-_22704936_22704936	0.201963	LHX3,4.p2	NM_001177518|Gm7849|665927|predicted gene 7849	NM_001177526|Gm7861|665956|predicted gene 7861
mm9_v1_chr6_+_123212210_123212220	0.200755	LHX3,4.p2	BC099471|Clec4d|17474|C-type lectin domain family 4, member d	AK150926|Clec4d|17474|C-type lectin domain family 4, member d
mm9_v1_chrX_+_34826611_34826611	0.199284	LHX3,4.p2	BC049546|Rhox2b|100039913|reproductive homeobox 2B	NM_001099316|Rhox2b|100039913|reproductive homeobox 2B
mm9_v1_chr8_-_22466673_22466698	0.198999	LHX3,4.p2	BC117042|Defa-rs1|13218|defensin, alpha, related sequence 1	BC117044|Defa-rs1|13218|defensin, alpha, related sequence 1	M33226|Defa-rs1|13218|defensin, alpha, related sequence 1	BC145556|Defa-rs1|13218|defensin, alpha, related sequence 1	BC171966|Defa-rs1|13218|defensin, alpha, related sequence 1	AK008584|Defa-rs1|13218|defensin, alpha, related sequence 1	NM_007844|Defa-rs1|13218|defensin, alpha, related sequence 1
mm9_v1_chr8_+_67492815_67492895	0.1984	LHX3,4.p2	
mm9_v1_chr14_+_27852148_27852279	0.196035	LHX3,4.p2	AF494210|Il17rd|171463|interleukin 17 receptor D	NM_134437|Il17rd|171463|interleukin 17 receptor D	BC138629|Il17rd|171463|interleukin 17 receptor D	BC066804|Il17rd|171463|interleukin 17 receptor D	AF459444|Il17rd|171463|interleukin 17 receptor D
mm9_v1_chr16_-_90810621_90810657	0.194579	LHX3,4.p2	AK017495|Urb1|207932|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	AK050735|Urb1|207932|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	NM_029497|Urb1|207932|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
mm9_v1_chr5_+_88805132_88805132	0.194333	LHX3,4.p2	AK017352|Amtn|71421|amelotin	NM_027793|Amtn|71421|amelotin
mm9_v1_chr14_-_34195326_34195332	0.194036	LHX3,4.p2	AK047936|Mapk8|26419|mitogen-activated protein kinase 8	AK053062|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr7_-_140974399_140974445	0.193592	LHX3,4.p2	AK028910|Dhx32|101437|DEAH (Asp-Glu-Ala-His) box polypeptide 32
mm9_v1_chr5_+_28168688_28168939	0.192494	LHX3,4.p2	AK141636|Htr5a|15563|5-hydroxytryptamine (serotonin) receptor 5A	BC115911|Htr5a|15563|5-hydroxytryptamine (serotonin) receptor 5A	BC116654|Htr5a|15563|5-hydroxytryptamine (serotonin) receptor 5A
mm9_v1_chr19_-_8040489_8040530	0.189611	LHX3,4.p2	AB056443|AB056442|171405|cDNA sequence AB056442	AB056442|AB056442|171405|cDNA sequence AB056442	NM_134256|AB056442|171405|cDNA sequence AB056442
mm9_v1_chr9_+_120860017_120860081	0.188942	LHX3,4.p2	AK135743|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	BC043078|Ctnnb1|12387|catenin (cadherin associated protein), beta 1
mm9_v1_chr7_+_125740810_125740810	0.187366	LHX3,4.p2	AK028404|Tmc5|74424|transmembrane channel-like gene family 5	NM_001105252|Tmc5|74424|transmembrane channel-like gene family 5
mm9_v1_chr1_-_154725297_154725297	0.186305	LHX3,4.p2	AK129101|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_001160257|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr4_+_57907600_57907648	0.186304	LHX3,4.p2	BC034188|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr6_+_83068645_83068681	0.185949	LHX3,4.p2	AK219549|Mogs|57377|mannosyl-oligosaccharide glucosidase
mm9_v1_chr6_+_123073408_123073506	0.184056	LHX3,4.p2	AK049002|Clec4a2|26888|C-type lectin domain family 4, member a2	BC006623|Clec4a2|26888|C-type lectin domain family 4, member a2	BC075729|Clec4a2|26888|C-type lectin domain family 4, member a2
mm9_v1_chr2_+_174153230_174153414	0.183925	LHX3,4.p2	AK020895|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AF124383|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK086715|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	BC062654|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AY682719|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr1_+_6720153_6720223	0.183583	LHX3,4.p2	AK133743|St18|240690|suppression of tumorigenicity 18	BC118528|St18|240690|suppression of tumorigenicity 18	AK137440|St18|240690|suppression of tumorigenicity 18	AK141513|St18|240690|suppression of tumorigenicity 18
mm9_v1_chr12_+_89131277_89131277	0.182908	LHX3,4.p2	NM_001177574|Gm2022|100039052|predicted pseudogene 2022
mm9_v1_chr1_-_57029287_57029345	0.181514	LHX3,4.p2	AK129270|Satb2|212712|special AT-rich sequence binding protein 2
mm9_v1_chr3_+_28596824_28596914	0.178225	LHX3,4.p2	AK005068|Slc2a2|20526|solute carrier family 2 (facilitated glucose transporter), member 2	NM_031197|Slc2a2|20526|solute carrier family 2 (facilitated glucose transporter), member 2	AK165430|Slc2a2|20526|solute carrier family 2 (facilitated glucose transporter), member 2	X15684|Slc2a2|20526|solute carrier family 2 (facilitated glucose transporter), member 2	BC034675|Slc2a2|20526|solute carrier family 2 (facilitated glucose transporter), member 2
mm9_v1_chr11_-_70273453_70273485	0.178096	LHX3,4.p2	AK028875|Cxcl16|66102|chemokine (C-X-C motif) ligand 16	NM_023158|Cxcl16|66102|chemokine (C-X-C motif) ligand 16
mm9_v1_chr4_+_146124224_146124224	0.175871	LHX3,4.p2	NM_001177546|Zfp600|667666|zinc finger protein 600
mm9_v1_chr7_+_130267661_130267769	0.175394	LHX3,4.p2	AK147327|Tnrc6a|233833|trinucleotide repeat containing 6a	AK008599|Tnrc6a|233833|trinucleotide repeat containing 6a	BC026849|Tnrc6a|233833|trinucleotide repeat containing 6a	AK083848|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr1_-_173579057_173579105	0.175232	LHX3,4.p2	AB196816|Slamf7|75345|SLAM family member 7	AB196817|Slamf7|75345|SLAM family member 7	AB196818|Slamf7|75345|SLAM family member 7	AB196819|Slamf7|75345|SLAM family member 7	AB196837|Slamf7|75345|SLAM family member 7	AF467909|Slamf7|75345|SLAM family member 7	AF467910|Slamf7|75345|SLAM family member 7	AF467911|Slamf7|75345|SLAM family member 7	BC011154|Slamf7|75345|SLAM family member 7	AK172665|Slamf7|75345|SLAM family member 7
mm9_v1_chr17_-_40456121_40456155	0.173906	LHX3,4.p2	M92849|Crisp1|11571|cysteine-rich secretory protein 1	L05559|Crisp1|11571|cysteine-rich secretory protein 1	BC011150|Crisp1|11571|cysteine-rich secretory protein 1	AK009449|Crisp1|11571|cysteine-rich secretory protein 1	NM_009638|Crisp1|11571|cysteine-rich secretory protein 1
mm9_v1_chr6_+_141578016_141578059	0.172399	LHX3,4.p2	AB031959|Slco1b2|28253|solute carrier organic anion transporter family, member 1b2	NM_020495|Slco1b2|28253|solute carrier organic anion transporter family, member 1b2
mm9_v1_chr6_+_134874663_134874674	0.17066	LHX3,4.p2	AK154276|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	AK169586|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B
mm9_v1_chr5_-_114881393_114881398	0.169018	LHX3,4.p2	
mm9_v1_chrX_-_165625110_165625142	0.168759	LHX3,4.p2	BC059090|Amelx|11704|amelogenin X chromosome	D31768|Amelx|11704|amelogenin X chromosome	D31769|Amelx|11704|amelogenin X chromosome	AK029358|Amelx|11704|amelogenin X chromosome	NM_001081978|Amelx|11704|amelogenin X chromosome	NM_009666|Amelx|11704|amelogenin X chromosome	S74899|Amelx|11704|amelogenin X chromosome
mm9_v1_chr17_+_21520684_21520739	0.168426	LHX3,4.p2	AK043955|Zfp677|210503|zinc finger protein 677	NM_172486|Zfp677|210503|zinc finger protein 677	BC057947|Zfp677|210503|zinc finger protein 677
mm9_v1_chr19_+_46471385_46471515	0.167717	LHX3,4.p2	AJ131692|Sufu|24069|suppressor of fused homolog (Drosophila)	AK016976|Sufu|24069|suppressor of fused homolog (Drosophila)	NM_001025391|Sufu|24069|suppressor of fused homolog (Drosophila)	NM_015752|Sufu|24069|suppressor of fused homolog (Drosophila)	BC048168|Sufu|24069|suppressor of fused homolog (Drosophila)	BC056997|Sufu|24069|suppressor of fused homolog (Drosophila)	AK156410|Sufu|24069|suppressor of fused homolog (Drosophila)	AF134893|Sufu|24069|suppressor of fused homolog (Drosophila)	AJ308626|Sufu|24069|suppressor of fused homolog (Drosophila)	AK015885|Sufu|24069|suppressor of fused homolog (Drosophila)	AK047603|Sufu|24069|suppressor of fused homolog (Drosophila)
mm9_v1_chr12_+_88855265_88855265	0.16767	LHX3,4.p2	AK139584|Gm8300|666806|predicted gene 8300	NM_001177565|Gm8300|666806|predicted gene 8300
mm9_v1_chr19_+_5474686_5474769	0.166793	LHX3,4.p2	NM_021474|Efemp2|58859|epidermal growth factor-containing fibulin-like extracellular matrix protein 2	AK075585|Efemp2|58859|epidermal growth factor-containing fibulin-like extracellular matrix protein 2	NM_001164352|Efemp2|58859|epidermal growth factor-containing fibulin-like extracellular matrix protein 2	AF109122|Efemp2|58859|epidermal growth factor-containing fibulin-like extracellular matrix protein 2
mm9_v1_chr5_-_123438517_123438541	0.166645	LHX3,4.p2	NM_001005866|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr1_-_173579128_173579145	0.166468	LHX3,4.p2	AK040678|Slamf7|75345|SLAM family member 7	AK089525|Slamf7|75345|SLAM family member 7
mm9_v1_chr15_-_66644127_66644154	0.164631	LHX3,4.p2	BC032922|Sla|20491|src-like adaptor	NM_009192|Sla|20491|src-like adaptor
mm9_v1_chr9_-_57531452_57531467	0.163207	LHX3,4.p2	BC054827|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	K02589|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	NM_009993|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	X00479|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2
mm9_v1_chr8_+_126001742_126001839	0.163196	LHX3,4.p2	NM_054070|Afg3l1|114896|AFG3(ATPase family gene 3)-like 1 (yeast)	AK168244|Afg3l1|114896|AFG3(ATPase family gene 3)-like 1 (yeast)	AK167964|Afg3l1|114896|AFG3(ATPase family gene 3)-like 1 (yeast)	AK159647|Afg3l1|114896|AFG3(ATPase family gene 3)-like 1 (yeast)	BC056978|Afg3l1|114896|AFG3(ATPase family gene 3)-like 1 (yeast)	BC060064|Afg3l1|114896|AFG3(ATPase family gene 3)-like 1 (yeast)	AF329695|Afg3l1|114896|AFG3(ATPase family gene 3)-like 1 (yeast)	AK014232|Afg3l1|114896|AFG3(ATPase family gene 3)-like 1 (yeast)
mm9_v1_chr9_+_118387306_118387461	0.163091	LHX3,4.p2	NM_001164789|Eomes|13813|eomesodermin homolog (Xenopus laevis)	NM_010136|Eomes|13813|eomesodermin homolog (Xenopus laevis)	AB031037|Eomes|13813|eomesodermin homolog (Xenopus laevis)	BC094319|Eomes|13813|eomesodermin homolog (Xenopus laevis)
mm9_v1_chr9_-_37519864_37519864	0.16228	LHX3,4.p2	BC130240|Olfr160|80706|olfactory receptor 160	NM_030553|Olfr160|80706|olfactory receptor 160
mm9_v1_chr2_+_164323044_164323060	0.160754	LHX3,4.p2	AK162573|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	BC016520|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	BC034175|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T
mm9_v1_chr1_+_162917640_162917674	0.158046	LHX3,4.p2	BC011165|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	S47225|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chr4_-_147525932_147526290	0.156976	LHX3,4.p2	AF176526|Fbxo6|50762|F-box protein 6	AK144715|Fbxo6|50762|F-box protein 6	AK150612|Fbxo6|50762|F-box protein 6	AK165867|Fbxo6|50762|F-box protein 6	NM_001163704|Fbxo6|50762|F-box protein 6	NM_001163705|Fbxo6|50762|F-box protein 6	NM_015797|Fbxo6|50762|F-box protein 6	AK002840|Fbxo6|50762|F-box protein 6	AK170743|Fbxo6|50762|F-box protein 6	AK171483|Fbxo6|50762|F-box protein 6	NM_001163706|Fbxo6|50762|F-box protein 6	NM_001163707|Fbxo6|50762|F-box protein 6
mm9_v1_chr11_+_16808929_16808957	0.15603	LHX3,4.p2	Z12608|Egfr|13649|epidermal growth factor receptor
mm9_v1_chr10_+_127759512_127759609	0.15553	LHX3,4.p2	AF186115|Cnpy2|56530|canopy 2 homolog (zebrafish)	NM_019953|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK150953|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr17_+_12571494_12571524	0.154109	LHX3,4.p2	BC057186|Plg|18815|plasminogen	AK132254|Plg|18815|plasminogen	J04766|Plg|18815|plasminogen	AK040840|Plg|18815|plasminogen
mm9_v1_chr17_+_30272123_30272409	0.153327	LHX3,4.p2	BC027161|Zfand3|21769|zinc finger, AN1-type domain 3	EF437371|Zfand3|21769|zinc finger, AN1-type domain 3	BC024483|Zfand3|21769|zinc finger, AN1-type domain 3
mm9_v1_chr3_-_95675399_95675461	0.153149	LHX3,4.p2	AK008293|Mrps21|66292|mitochondrial ribosomal protein S21	AB049956|Mrps21|66292|mitochondrial ribosomal protein S21	AK002588|Mrps21|66292|mitochondrial ribosomal protein S21	AK007662|Mrps21|66292|mitochondrial ribosomal protein S21	AK009703|Mrps21|66292|mitochondrial ribosomal protein S21	AK008265|Mrps21|66292|mitochondrial ribosomal protein S21
mm9_v1_chr9_+_92170439_92170579	0.151288	LHX3,4.p2	NM_001195084|Plscr2|18828|phospholipid scramblase 2	NM_008880|Plscr2|18828|phospholipid scramblase 2	AK002410|Plscr2|18828|phospholipid scramblase 2	BC011299|Plscr2|18828|phospholipid scramblase 2	BC002012|Plscr2|18828|phospholipid scramblase 2
mm9_v1_chr3_-_49561168_49561243	0.150587	LHX3,4.p2	AF416735|Pcdh18|73173|protocadherin 18	AK173204|Pcdh18|73173|protocadherin 18	BC052198|Pcdh18|73173|protocadherin 18	AK036560|Pcdh18|73173|protocadherin 18	AK032820|Pcdh18|73173|protocadherin 18	NM_130448|Pcdh18|73173|protocadherin 18
mm9_v1_chr2_+_136357921_136358056	0.147503	LHX3,4.p2	AK029804|Ankrd5|319196|ankyrin repeat domain 5	BC089504|Ankrd5|319196|ankyrin repeat domain 5	BC120825|Ankrd5|319196|ankyrin repeat domain 5	BC144833|Ankrd5|319196|ankyrin repeat domain 5	NM_175667|Ankrd5|319196|ankyrin repeat domain 5
mm9_v1_chr5_+_53981893_53981983	0.147228	LHX3,4.p2	BC051387|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK080359|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK145187|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK090006|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region
mm9_v1_chr3_-_15575064_15575064	0.147032	LHX3,4.p2	AK154879|Sirpb1b|668101|signal-regulatory protein beta 1B	NM_001173460|Sirpb1b|668101|signal-regulatory protein beta 1B
mm9_v1_chr13_+_101439309_101439435	0.14616	LHX3,4.p2	NM_001168386|Ccdc125|76041|coiled-coil domain containing 125	NM_183115|Ccdc125|76041|coiled-coil domain containing 125
mm9_v1_chr16_-_11137100_11137212	0.14526	LHX3,4.p2	AK218593|Zc3h7a|106205|zinc finger CCCH type containing 7 A
mm9_v1_chr15_-_98373055_98373058	0.142487	LHX3,4.p2	AK085131|Ccnt1|12455|cyclin T1	AK052836|Ccnt1|12455|cyclin T1
mm9_v1_chr16_-_35363927_35364003	0.142215	LHX3,4.p2	AK037540|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	AK044615|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	AK007341|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	AK082516|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	NM_133704|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)
mm9_v1_chr4_-_140366562_140366564	0.141472	LHX3,4.p2	AB013849|Padi3|18601|peptidyl arginine deiminase, type III	NM_011060|Padi3|18601|peptidyl arginine deiminase, type III
mm9_v1_chr2_-_72931338_72931457	0.140742	LHX3,4.p2	
mm9_v1_chr14_-_57190668_57190714	0.140613	LHX3,4.p2	BC092399|Cenpj|219103|centromere protein J	AK077045|Cenpj|219103|centromere protein J	NM_001014996|Cenpj|219103|centromere protein J
mm9_v1_chr5_-_100391613_100391631	0.139128	LHX3,4.p2	AK012230|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr1_-_146024404_146024501	0.13812	LHX3,4.p2	AF498319|Rgs13|246709|regulator of G-protein signaling 13	BC049624|Rgs13|246709|regulator of G-protein signaling 13	AK043268|Rgs13|246709|regulator of G-protein signaling 13	NM_153171|Rgs13|246709|regulator of G-protein signaling 13
mm9_v1_chr3_-_131006068_131006148	0.137628	LHX3,4.p2	AK142740|Cyp2u1|71519|cytochrome P450, family 2, subfamily u, polypeptide 1	AK018458|Cyp2u1|71519|cytochrome P450, family 2, subfamily u, polypeptide 1	AK041477|Cyp2u1|71519|cytochrome P450, family 2, subfamily u, polypeptide 1	NM_027816|Cyp2u1|71519|cytochrome P450, family 2, subfamily u, polypeptide 1
mm9_v1_chr17_+_29178771_29178812	0.137603	LHX3,4.p2	
mm9_v1_chr3_-_81779636_81779675	0.137417	LHX3,4.p2	U24493|Tdo2|56720|tryptophan 2,3-dioxygenase	BC018390|Tdo2|56720|tryptophan 2,3-dioxygenase	NM_019911|Tdo2|56720|tryptophan 2,3-dioxygenase	AK132271|Tdo2|56720|tryptophan 2,3-dioxygenase
mm9_v1_chr3_-_58905678_58905742	0.137364	LHX3,4.p2	AK154964|Gpr171|229323|G protein-coupled receptor 171	AK089287|Gpr171|229323|G protein-coupled receptor 171	BC024054|Gpr171|229323|G protein-coupled receptor 171	AK041381|Gpr171|229323|G protein-coupled receptor 171	AK041582|Gpr171|229323|G protein-coupled receptor 171	AK083323|Gpr171|229323|G protein-coupled receptor 171	AK089252|Gpr171|229323|G protein-coupled receptor 171	AK154725|Gpr171|229323|G protein-coupled receptor 171	AK079674|Gpr171|229323|G protein-coupled receptor 171	NM_173398|Gpr171|229323|G protein-coupled receptor 171
mm9_v1_chr12_-_86097486_86097537	0.137177	LHX3,4.p2	
mm9_v1_chr1_-_55283189_55283376	0.135639	LHX3,4.p2	BC026871|Rftn2|74013|raftlin family member 2	AK014318|Rftn2|74013|raftlin family member 2
mm9_v1_chr7_-_134519509_134519563	0.135558	LHX3,4.p2	BC058799|Zfp747|269997|zinc finger protein 747	AK032584|Zfp747|269997|zinc finger protein 747	AK042972|Zfp747|269997|zinc finger protein 747	NM_175560|Zfp747|269997|zinc finger protein 747
mm9_v1_chr6_-_41396095_41396143	0.135533	LHX3,4.p2	NM_001103153|Gm10334|100040233|predicted gene 10334	BC141304|Prss3|22073|protease, serine, 3
mm9_v1_chr2_-_27118325_27118417	0.134024	LHX3,4.p2	AK012893|Vav2|22325|vav 2 oncogene	BC025845|Vav2|22325|vav 2 oncogene
mm9_v1_chr4_-_41685498_41685535	0.133761	LHX3,4.p2	
mm9_v1_chr16_-_17144301_17144301	0.132585	LHX3,4.p2	BC050881|Ccdc116|76872|coiled-coil domain containing 116	NM_001164606|Ccdc116|76872|coiled-coil domain containing 116
mm9_v1_chr6_-_51416921_51416984	0.132358	LHX3,4.p2	BC059107|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr11_-_77997042_77997098	0.132149	LHX3,4.p2	BC026656|Rpl23a|268449|ribosomal protein L23A	BC096637|Rpl23a|268449|ribosomal protein L23A	AF452721|Rpl23a|268449|ribosomal protein L23A	BC029892|Rpl23a|268449|ribosomal protein L23A	AK028387|Rpl23a|268449|ribosomal protein L23A	AK152095|Rpl23a|268449|ribosomal protein L23A	BC086884|Rpl23a|268449|ribosomal protein L23A	BC086883|Rpl23a|268449|ribosomal protein L23A	BC125640|Rpl23a|268449|ribosomal protein L23A	BC125642|Rpl23a|268449|ribosomal protein L23A	NM_207523|Rpl23a|268449|ribosomal protein L23A
mm9_v1_chr1_+_58169979_58170102	0.130405	LHX3,4.p2	NM_023617|Aox3|71724|aldehyde oxidase 3	BC138876|Aox3|71724|aldehyde oxidase 3	AK143048|Aox3|71724|aldehyde oxidase 3	AK054065|Aox3|71724|aldehyde oxidase 3	AK149434|Aox3|71724|aldehyde oxidase 3	BC049853|Aox3|71724|aldehyde oxidase 3	BC024046|Aox3|71724|aldehyde oxidase 3	AY347569|Aox3|71724|aldehyde oxidase 3	AY347570|Aox3|71724|aldehyde oxidase 3
mm9_v1_chr12_-_84828657_84828685	0.129295	LHX3,4.p2	AF362750|Dpf3|70127|D4, zinc and double PHD fingers, family 3	FJ151218|Dpf3|70127|D4, zinc and double PHD fingers, family 3	NM_058212|Dpf3|70127|D4, zinc and double PHD fingers, family 3	AK039011|Dpf3|70127|D4, zinc and double PHD fingers, family 3	AK032649|Dpf3|70127|D4, zinc and double PHD fingers, family 3	AK012970|Dpf3|70127|D4, zinc and double PHD fingers, family 3
mm9_v1_chr7_+_51251248_51251248	0.128684	LHX3,4.p2	BC013660|Klk1b11|16613|kallikrein 1-related peptidase b11	NM_010640|Klk1b11|16613|kallikrein 1-related peptidase b11
mm9_v1_chr4_-_135609279_135609318	0.125486	LHX3,4.p2	AK011211|Rpl11|67025|ribosomal protein L11	AK011800|Rpl11|67025|ribosomal protein L11	AK169053|Rpl11|67025|ribosomal protein L11	AK002998|Rpl11|67025|ribosomal protein L11	AK008422|Rpl11|67025|ribosomal protein L11	AK013923|Rpl11|67025|ribosomal protein L11	AK014593|Rpl11|67025|ribosomal protein L11	AK153486|Rpl11|67025|ribosomal protein L11	AK164445|Rpl11|67025|ribosomal protein L11	NM_025919|Rpl11|67025|ribosomal protein L11	AK088967|Rpl11|67025|ribosomal protein L11
mm9_v1_chr6_-_40985505_40985509	0.125477	LHX3,4.p2	AK007773|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	AK008695|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	AK008460|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	NM_023333|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	BC061093|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene
mm9_v1_chr11_+_46564012_46564012	0.124949	LHX3,4.p2	AK133466|Havcr1|171283|hepatitis A virus cellular receptor 1	NM_001166631|Havcr1|171283|hepatitis A virus cellular receptor 1
mm9_v1_chr11_+_82594636_82594745	0.123685	LHX3,4.p2	NM_010716|Lig3|16882|ligase III, DNA, ATP-dependent	BC026143|Lig3|16882|ligase III, DNA, ATP-dependent	AK031540|Lig3|16882|ligase III, DNA, ATP-dependent	AK156018|Lig3|16882|ligase III, DNA, ATP-dependent	AK010719|Lig3|16882|ligase III, DNA, ATP-dependent	AK150644|Lig3|16882|ligase III, DNA, ATP-dependent	AK167363|Lig3|16882|ligase III, DNA, ATP-dependent	BC049240|Lig3|16882|ligase III, DNA, ATP-dependent	BC083500|Lig3|16882|ligase III, DNA, ATP-dependent	AK143531|Lig3|16882|ligase III, DNA, ATP-dependent
mm9_v1_chr9_-_35936363_35936363	0.122843	LHX3,4.p2	NM_001167587|Gm5916|546123|predicted gene 5916
mm9_v1_chr17_+_88524851_88524851	0.122694	LHX3,4.p2	AK139504|Gm4832|225058|predicted gene 4832	NM_001190356|Gm4832|225058|predicted gene 4832
mm9_v1_chr4_-_147247909_147248045	0.122467	LHX3,4.p2	
mm9_v1_chr14_+_31699648_31699721	0.120831	LHX3,4.p2	NM_001159299|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	NM_018746|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	AK004862|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	AK004893|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	AK050016|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	AK050270|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	AF023919|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	BC016500|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	BC021459|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	BC092258|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	BC094457|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4
mm9_v1_chr1_-_65109982_65110015	0.120438	LHX3,4.p2	K02583|Crygd|12967|crystallin, gamma D	BC057013|Crygd|12967|crystallin, gamma D	AK136286|Crygd|12967|crystallin, gamma D	BC132116|Crygd|12967|crystallin, gamma D	BC132118|Crygd|12967|crystallin, gamma D	NM_007776|Crygd|12967|crystallin, gamma D
mm9_v1_chr18_-_9619426_9619475	0.120092	LHX3,4.p2	AK005743|Cetn1|26369|centrin 1	AK005736|Cetn1|26369|centrin 1	D16301|Cetn1|26369|centrin 1	AK005837|Cetn1|26369|centrin 1	AK015808|Cetn1|26369|centrin 1	AK132753|Cetn1|26369|centrin 1	BC061155|Cetn1|26369|centrin 1	AK006940|Cetn1|26369|centrin 1	BC048488|Cetn1|26369|centrin 1	NM_007593|Cetn1|26369|centrin 1	AK076986|Cetn1|26369|centrin 1
mm9_v1_chr13_+_41012969_41013020	0.120047	LHX3,4.p2	AY236875|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	NM_133219|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK019924|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	BC054845|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm9_v1_chr9_-_40792541_40792554	0.118979	LHX3,4.p2	AK163744|Crtam|54698|cytotoxic and regulatory T cell molecule
mm9_v1_chr14_+_69647294_69647485	0.117911	LHX3,4.p2	AF099098|Stc1|20855|stanniocalcin 1	BC021425|Stc1|20855|stanniocalcin 1	AK134260|Stc1|20855|stanniocalcin 1	NM_009285|Stc1|20855|stanniocalcin 1	AK142220|Stc1|20855|stanniocalcin 1	AK149293|Stc1|20855|stanniocalcin 1	AK149351|Stc1|20855|stanniocalcin 1	AK161960|Stc1|20855|stanniocalcin 1
mm9_v1_chr16_-_88962877_88963117	0.117279	LHX3,4.p2	AF345296|Krtap16-6|170655|keratin associated protein 16-6	BC107303|Krtap16-10|71369|keratin associated protein 16-10	BC107304|Krtap16-10|71369|keratin associated protein 16-10	BC119504|Krtap16-10|71369|keratin associated protein 16-10	BC127231|Krtap16-10|71369|keratin associated protein 16-10	BC127232|Krtap16-10|71369|keratin associated protein 16-10	BC132658|Krtap16-10|71369|keratin associated protein 16-10	BC132660|Krtap16-10|71369|keratin associated protein 16-10	AK017265|Krtap16-10|71369|keratin associated protein 16-10	NM_183296|Krtap16-10|71369|keratin associated protein 16-10
mm9_v1_chrX_+_137212566_137212566	0.114474	LHX3,4.p2	AF196480|Mid2|23947|midline 2	NM_011845|Mid2|23947|midline 2
mm9_v1_chr5_+_33760994_33761117	0.114187	LHX3,4.p2	AK084585|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	AK163728|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene
mm9_v1_chr3_+_135011000_135011069	0.113064	LHX3,4.p2	AK029525|Nhedc1|74446|Na+/H+ exchanger domain containing 1	NM_028946|Nhedc1|74446|Na+/H+ exchanger domain containing 1	AK007064|Nhedc1|74446|Na+/H+ exchanger domain containing 1	AK015318|Nhedc1|74446|Na+/H+ exchanger domain containing 1	AK016883|Nhedc1|74446|Na+/H+ exchanger domain containing 1	AK016917|Nhedc1|74446|Na+/H+ exchanger domain containing 1	BC025002|Nhedc1|74446|Na+/H+ exchanger domain containing 1
mm9_v1_chr3_+_31801595_31801757	0.112455	LHX3,4.p2	AK012400|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	BC046227|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	BC058957|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	NM_028231|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm9_v1_chr7_-_108729674_108729685	0.112144	LHX3,4.p2	AF016463|Art2b|11872|ADP-ribosyltransferase 2b	AF016465|Art2b|11872|ADP-ribosyltransferase 2b	NM_019915|Art2b|11872|ADP-ribosyltransferase 2b	X87612|Art2b|11872|ADP-ribosyltransferase 2b	S79913|Art2a-ps|11871|ADP-ribosyltransferase 2a, pseudogene
mm9_v1_chr5_+_64484146_64484264	0.11059	LHX3,4.p2	BC052762|Pgm1|66681|phosphoglucomutase 1	NM_025700|Pgm1|66681|phosphoglucomutase 1	BC030869|Pgm1|66681|phosphoglucomutase 1	AK014332|Pgm1|66681|phosphoglucomutase 1
mm9_v1_chr11_-_101036732_101036756	0.110279	LHX3,4.p2	AF215983|Ccr10|12777|chemokine (C-C motif) receptor 10	AF208238|Ccr10|12777|chemokine (C-C motif) receptor 10	AF215982|Ccr10|12777|chemokine (C-C motif) receptor 10	AK090044|Ccr10|12777|chemokine (C-C motif) receptor 10	BC117043|Ccr10|12777|chemokine (C-C motif) receptor 10	BC120542|Ccr10|12777|chemokine (C-C motif) receptor 10	NM_007721|Ccr10|12777|chemokine (C-C motif) receptor 10
mm9_v1_chr5_-_138713960_138713994	0.110259	LHX3,4.p2	AK132558|Gal3st4|330217|galactose-3-O-sulfotransferase 4	NM_001033416|Gal3st4|330217|galactose-3-O-sulfotransferase 4	AK138993|Gal3st4|330217|galactose-3-O-sulfotransferase 4
mm9_v1_chrX_+_34944974_34944974	0.109215	LHX3,4.p2	NM_001085348|Rhox2e|100040016|reproductive homeobox 2E
mm9_v1_chr3_+_32607582_32607695	0.109161	LHX3,4.p2	AF041476|Actl6a|56456|actin-like 6A	AK169278|Actl6a|56456|actin-like 6A	AK090154|Actl6a|56456|actin-like 6A	AK167905|Actl6a|56456|actin-like 6A	BC094498|Actl6a|56456|actin-like 6A	AK002724|Actl6a|56456|actin-like 6A	BC001994|Actl6a|56456|actin-like 6A
mm9_v1_chr11_+_29607599_29607721	0.107807	LHX3,4.p2	AB073672|Rtn4|68585|reticulon 4
mm9_v1_chrX_+_34784986_34784992	0.105767	LHX3,4.p2	AK015997|Rhox2a|75199|reproductive homeobox 2A	DQ058639|Rhox2a|75199|reproductive homeobox 2A	NM_001085348|Rhox2e|100040016|reproductive homeobox 2E	NM_029203|Rhox2a|75199|reproductive homeobox 2A	BC132216|Rhox2a|75199|reproductive homeobox 2A	BC132220|Rhox2a|75199|reproductive homeobox 2A	BC145534|Rhox2a|75199|reproductive homeobox 2A
mm9_v1_chr15_+_84022647_84022764	0.104707	LHX3,4.p2	AK159740|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK039949|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	NM_178614|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK144975|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK041783|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK084395|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	BC119178|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	BC119180|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK086633|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK167806|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK161378|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK169066|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK169351|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK003990|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK168510|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)
mm9_v1_chr16_-_36562219_36562219	0.103853	LHX3,4.p2	AF110178|Casr|12374|calcium-sensing receptor	AF110179|Casr|12374|calcium-sensing receptor	NM_013803|Casr|12374|calcium-sensing receptor
mm9_v1_chr14_-_73762840_73762848	0.103633	LHX3,4.p2	AK205546|Itm2b|16432|integral membrane protein 2B	AK205709|Itm2b|16432|integral membrane protein 2B	AK209176|Itm2b|16432|integral membrane protein 2B	AK215843|Itm2b|16432|integral membrane protein 2B	AK217202|Itm2b|16432|integral membrane protein 2B	AK218926|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr6_-_97155541_97155640	0.103421	LHX3,4.p2	BC002002|Uba3|22200|ubiquitin-like modifier activating enzyme 3	BC080776|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK048148|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK032514|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK166655|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK168859|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK043801|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK014433|Uba3|22200|ubiquitin-like modifier activating enzyme 3	NM_001111106|Uba3|22200|ubiquitin-like modifier activating enzyme 3	NM_011666|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK159381|Uba3|22200|ubiquitin-like modifier activating enzyme 3
mm9_v1_chr17_-_46381025_46381091	0.0998825	LHX3,4.p2	
mm9_v1_chr4_-_147016606_147016616	0.0997462	LHX3,4.p2	BC058858|2610305D13Rik|112422|RIKEN cDNA 2610305D13 gene	NM_145078|2610305D13Rik|112422|RIKEN cDNA 2610305D13 gene
mm9_v1_chr5_+_96639133_96639181	0.0996102	LHX3,4.p2	NM_001039084|Mrpl1|94061|mitochondrial ribosomal protein L1	NM_053158|Mrpl1|94061|mitochondrial ribosomal protein L1	AK083978|Mrpl1|94061|mitochondrial ribosomal protein L1	AK142249|Mrpl1|94061|mitochondrial ribosomal protein L1	AK010343|Mrpl1|94061|mitochondrial ribosomal protein L1	AK017938|Mrpl1|94061|mitochondrial ribosomal protein L1	AK172544|Mrpl1|94061|mitochondrial ribosomal protein L1	BC061042|Mrpl1|94061|mitochondrial ribosomal protein L1	AK015476|Mrpl1|94061|mitochondrial ribosomal protein L1	AB049632|Mrpl1|94061|mitochondrial ribosomal protein L1
mm9_v1_chr4_+_145850602_145850602	0.0984065	LHX3,4.p2	NM_001177767|Gm13138|100043034|predicted gene 13138	NM_009051|Rex2|19715|reduced expression 2
mm9_v1_chr4_+_146395958_146395958	0.0984065	LHX3,4.p2	NM_001177767|Gm13138|100043034|predicted gene 13138	NM_009051|Rex2|19715|reduced expression 2
mm9_v1_chr7_+_28345494_28345525	0.0976777	LHX3,4.p2	AK077369|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	NM_001122767|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	AK009941|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	AK140814|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	AK009456|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene
mm9_v1_chrX_-_133267605_133267741	0.0975073	LHX3,4.p2	
mm9_v1_chr11_+_104469313_104469402	0.0971538	LHX3,4.p2	BC125518|Itgb3|16416|integrin beta 3	BC125520|Itgb3|16416|integrin beta 3	NM_016780|Itgb3|16416|integrin beta 3	AK157958|Itgb3|16416|integrin beta 3	AF026509|Itgb3|16416|integrin beta 3	AY541673|Itgb3|16416|integrin beta 3	U83167|Itgb3|16416|integrin beta 3
mm9_v1_chr1_+_74314377_74314414	0.0969151	LHX3,4.p2	AK213157|Arpc2|76709|actin related protein 2/3 complex, subunit 2
mm9_v1_chr1_+_109407998_109408121	0.0963054	LHX3,4.p2	AK081487|Serpinb2|18788|serine (or cysteine) peptidase inhibitor, clade B, member 2	NM_001174170|Serpinb2|18788|serine (or cysteine) peptidase inhibitor, clade B, member 2	NM_011111|Serpinb2|18788|serine (or cysteine) peptidase inhibitor, clade B, member 2	AK090049|Serpinb2|18788|serine (or cysteine) peptidase inhibitor, clade B, member 2
mm9_v1_chr11_-_106062079_106062107	0.0954762	LHX3,4.p2	AK011721|Ccdc47|67163|coiled-coil domain containing 47
mm9_v1_chr3_+_94247220_94247297	0.0950581	LHX3,4.p2	AK021196|Mrpl9|78523|mitochondrial ribosomal protein L9	AK161563|Mrpl9|78523|mitochondrial ribosomal protein L9	AK040055|Mrpl9|78523|mitochondrial ribosomal protein L9	AK162023|Mrpl9|78523|mitochondrial ribosomal protein L9	NM_030116|Mrpl9|78523|mitochondrial ribosomal protein L9	AK146237|Mrpl9|78523|mitochondrial ribosomal protein L9	AK046099|Mrpl9|78523|mitochondrial ribosomal protein L9	BC116385|Mrpl9|78523|mitochondrial ribosomal protein L9	BC116386|Mrpl9|78523|mitochondrial ribosomal protein L9	AB049637|Mrpl9|78523|mitochondrial ribosomal protein L9
mm9_v1_chr2_+_90620127_90620146	0.0947493	LHX3,4.p2	BC039616|Fnbp4|55935|formin binding protein 4
mm9_v1_chr14_+_63761507_63761880	0.0924117	LHX3,4.p2	AK201025|Ctsb|13030|cathepsin B	AK201162|Ctsb|13030|cathepsin B	AF062526|Ctsb|13030|cathepsin B
mm9_v1_chr6_+_41304103_41304177	0.0907835	LHX3,4.p2	BC138698|Try10|436522|trypsin 10	BC146017|Try10|436522|trypsin 10	NM_001038996|Try10|436522|trypsin 10	AK133516|Try10|436522|trypsin 10
mm9_v1_chr11_+_72264668_72264732	0.0890447	LHX3,4.p2	AK196252|Mybbp1a|18432|MYB binding protein (P160) 1a	AK190076|Mybbp1a|18432|MYB binding protein (P160) 1a	AK194300|Mybbp1a|18432|MYB binding protein (P160) 1a
mm9_v1_chr13_-_100114593_100114662	0.088558	LHX3,4.p2	BC016563|Ptcd2|68927|pentatricopeptide repeat domain 2	BC025110|Ptcd2|68927|pentatricopeptide repeat domain 2	NM_026873|Ptcd2|68927|pentatricopeptide repeat domain 2	AK004502|Ptcd2|68927|pentatricopeptide repeat domain 2	AK144396|Ptcd2|68927|pentatricopeptide repeat domain 2
mm9_v1_chr3_-_15426426_15426426	0.0854508	LHX3,4.p2	AB112022|Sirpb1a|320832|signal-regulatory protein beta 1A	NM_001002898|Sirpb1a|320832|signal-regulatory protein beta 1A
mm9_v1_chr16_+_78931190_78931192	0.083439	LHX3,4.p2	AK031063|Chodl|246048|chondrolectin	AK076523|Chodl|246048|chondrolectin	AK140910|Chodl|246048|chondrolectin	NM_139134|Chodl|246048|chondrolectin
mm9_v1_chrX_+_34868165_34868165	0.0834078	LHX3,4.p2	NM_001099318|Rhox2c|100039948|reproductive homeobox 2C
mm9_v1_chr7_+_22134391_22134391	0.0833787	LHX3,4.p2	NM_001166739|Vmn1r128|667199|vomeronasal 1 receptor 128
mm9_v1_chr6_-_89890500_89890500	0.0824582	LHX3,4.p2	NM_011684|Vmn1r45|22297|vomeronasal 1 receptor 45
mm9_v1_chr16_+_20674298_20674336	0.0822453	LHX3,4.p2	BC021441|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr11_-_61058671_61058791	0.0814677	LHX3,4.p2	
mm9_v1_chr2_-_84265422_84265424	0.0811902	LHX3,4.p2	AK137210|Calcrl|54598|calcitonin receptor-like	NM_018782|Calcrl|54598|calcitonin receptor-like	AB015595|Calcrl|54598|calcitonin receptor-like
mm9_v1_chr11_+_78640059_78640096	0.0807395	LHX3,4.p2	AK007467|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	AK144380|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	NM_001076681|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene
mm9_v1_chrX_-_159987479_159987608	0.0793366	LHX3,4.p2	BC113145|Grpr|14829|gastrin releasing peptide receptor	M61000|Grpr|14829|gastrin releasing peptide receptor	NM_008177|Grpr|14829|gastrin releasing peptide receptor	AK033473|Grpr|14829|gastrin releasing peptide receptor	M57922|Grpr|14829|gastrin releasing peptide receptor
mm9_v1_chr15_-_79363346_79363346	0.0792938	LHX3,4.p2	NM_152806|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
mm9_v1_chr2_+_162813216_162813237	0.0771545	LHX3,4.p2	NM_013731|Sgk2|27219|serum/glucocorticoid regulated kinase 2	AK050009|Sgk2|27219|serum/glucocorticoid regulated kinase 2
mm9_v1_chr9_+_54711492_54711604	0.0769061	LHX3,4.p2	NM_022655|Ireb2|64602|iron responsive element binding protein 2	BC044665|Ireb2|64602|iron responsive element binding protein 2
mm9_v1_chr11_+_49058980_49059003	0.0757232	LHX3,4.p2	L07037|Mgat1|17308|mannoside acetylglucosaminyltransferase 1
mm9_v1_chr15_-_101573522_101573539	0.075343	LHX3,4.p2	BC125346|Krt71|56735|keratin 71	BC125348|Krt71|56735|keratin 71	AB033744|Krt71|56735|keratin 71	AB100413|Krt71|56735|keratin 71	AY033497|Krt71|56735|keratin 71	NM_019956|Krt71|56735|keratin 71	AK003610|Krt71|56735|keratin 71	AK003704|Krt71|56735|keratin 71
mm9_v1_chr9_-_105999021_105999113	0.0729046	LHX3,4.p2	AM231151|Col6a4|68553|collagen, type VI, alpha 4	NM_026763|Col6a4|68553|collagen, type VI, alpha 4	AB370265|Col6a4|68553|collagen, type VI, alpha 4
mm9_v1_chr6_+_90072636_90072636	0.0703043	LHX3,4.p2	BC046308|Vmn1r51|22296|vomeronasal 1 receptor 51	NM_011683|Vmn1r51|22296|vomeronasal 1 receptor 51
mm9_v1_chr16_-_57292963_57292977	0.0697987	LHX3,4.p2	AK161475|Tmem30c|71027|transmembrane protein 30C	NM_027651|Tmem30c|71027|transmembrane protein 30C	AK016747|Tmem30c|71027|transmembrane protein 30C	AK016597|Tmem30c|71027|transmembrane protein 30C
mm9_v1_chr4_-_35792385_35792444	0.0680007	LHX3,4.p2	BC137866|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC144985|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC145692|Lingo2|242384|leucine rich repeat and Ig domain containing 2	AK045639|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_001166001|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_175516|Lingo2|242384|leucine rich repeat and Ig domain containing 2
mm9_v1_chr12_-_32893074_32893513	0.0673732	LHX3,4.p2	BC051246|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	AK137620|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	NM_001146201|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	AJ249280|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	NM_020272|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	AK137470|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	AK040543|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	AK132553|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	NM_001146200|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide
mm9_v1_chr10_-_20444654_20444883	0.0673257	LHX3,4.p2	AF190639|Pde7b|29863|phosphodiesterase 7B	BC130267|Pde7b|29863|phosphodiesterase 7B	AK020137|Pde7b|29863|phosphodiesterase 7B	AK040876|Pde7b|29863|phosphodiesterase 7B	NM_013875|Pde7b|29863|phosphodiesterase 7B	AK035385|Pde7b|29863|phosphodiesterase 7B
mm9_v1_chrX_+_97710893_97711108	0.0654039	LHX3,4.p2	AK218313|Igbp1|18518|immunoglobulin (CD79A) binding protein 1	AK210875|Igbp1|18518|immunoglobulin (CD79A) binding protein 1
mm9_v1_chr4_-_136158570_136158663	0.064501	LHX3,4.p2	AK129170|Kdm1a|99982|lysine (K)-specific demethylase 1A	BC059885|Kdm1a|99982|lysine (K)-specific demethylase 1A	NM_133872|Kdm1a|99982|lysine (K)-specific demethylase 1A
mm9_v1_chr12_-_85958287_85958415	0.0644267	LHX3,4.p2	AJ001166|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4	AK028420|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4	BC050102|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4	NM_008992|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4
mm9_v1_chr9_-_46128068_46128068	0.0638784	LHX3,4.p2	AK016488|4931429L15Rik|74361|RIKEN cDNA 4931429L15 gene	NM_183104|4931429L15Rik|74361|RIKEN cDNA 4931429L15 gene
mm9_v1_chr9_+_72806591_72806665	0.0637993	LHX3,4.p2	AY428507|Dyx1c1|67685|dyslexia susceptibility 1 candidate 1 homolog (human)	AY464142|Dyx1c1|67685|dyslexia susceptibility 1 candidate 1 homolog (human)	NM_001163725|Dyx1c1|67685|dyslexia susceptibility 1 candidate 1 homolog (human)	NM_026314|Dyx1c1|67685|dyslexia susceptibility 1 candidate 1 homolog (human)	AK076862|Dyx1c1|67685|dyslexia susceptibility 1 candidate 1 homolog (human)	AK161368|Dyx1c1|67685|dyslexia susceptibility 1 candidate 1 homolog (human)	BC026462|Dyx1c1|67685|dyslexia susceptibility 1 candidate 1 homolog (human)
mm9_v1_chr4_+_100151471_100151479	0.0630452	LHX3,4.p2	AK133379|Ube2u|381534|ubiquitin-conjugating enzyme E2U (putative)	NM_001033773|Ube2u|381534|ubiquitin-conjugating enzyme E2U (putative)	BC150880|Ube2u|381534|ubiquitin-conjugating enzyme E2U (putative)	BC150888|Ube2u|381534|ubiquitin-conjugating enzyme E2U (putative)	BC172031|Ube2u|381534|ubiquitin-conjugating enzyme E2U (putative)
mm9_v1_chr7_-_109643286_109643286	0.062106	LHX3,4.p2	BC106987|Olfr545|258837|olfactory receptor 545	BC128265|Olfr545|258837|olfactory receptor 545	BC128266|Olfr545|258837|olfactory receptor 545	NM_146840|Olfr545|258837|olfactory receptor 545
mm9_v1_chr14_+_122433895_122433895	0.0616064	LHX3,4.p2	BC099499|Timm8a2|223262|translocase of inner mitochondrial membrane 8 homolog a2 (yeast)	NM_001037744|Timm8a2|223262|translocase of inner mitochondrial membrane 8 homolog a2 (yeast)
mm9_v1_chr5_-_115119973_115120071	0.0612596	LHX3,4.p2	AK189496|Gltp|56356|glycolipid transfer protein
mm9_v1_chr10_-_58138401_58138443	0.0610656	LHX3,4.p2	BC068315|Edar|13608|ectodysplasin-A receptor	AF160502|Edar|13608|ectodysplasin-A receptor	NM_010100|Edar|13608|ectodysplasin-A receptor
mm9_v1_chr1_+_109258889_109258923	0.0604682	LHX3,4.p2	AK009003|Serpinb11|66957|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	AK009855|Serpinb11|66957|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	NM_025867|Serpinb11|66957|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	BC010313|Serpinb11|66957|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11
mm9_v1_chr15_+_22966203_22966220	0.059497	LHX3,4.p2	AK082311|Cdh18|320865|cadherin 18	AK137430|Cdh18|320865|cadherin 18	NM_001081299|Cdh18|320865|cadherin 18
mm9_v1_chr8_+_110068959_110068969	0.0587205	LHX3,4.p2	AK159248|Wwp2|66894|WW domain containing E3 ubiquitin protein ligase 2
mm9_v1_chr10_-_61441842_61441910	0.0576966	LHX3,4.p2	NM_007731|Col13a1|12817|collagen, type XIII, alpha 1	U30292|Col13a1|12817|collagen, type XIII, alpha 1
mm9_v1_chr4_+_145260599_145260599	0.0568879	LHX3,4.p2	BC096593|Gm13242|100041379|predicted gene 13242	NM_001103158|Gm13242|100041379|predicted gene 13242
mm9_v1_chrX_-_75336699_75336712	0.0566433	LHX3,4.p2	BC125514|Obp1a|18249|odorant binding protein Ia	BC125516|Obp1a|18249|odorant binding protein Ia	AK017455|Obp1a|18249|odorant binding protein Ia	NM_008754|Obp1a|18249|odorant binding protein Ia
mm9_v1_chr2_-_63022140_63022343	0.0560075	LHX3,4.p2	AJ291608|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK052366|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK043768|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK034003|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	NM_133207|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm9_v1_chr9_-_36540210_36540345	0.0559667	LHX3,4.p2	AK017358|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
mm9_v1_chr1_+_6720087_6720131	0.0554699	LHX3,4.p2	AB097467|St18|240690|suppression of tumorigenicity 18	AJ536155|St18|240690|suppression of tumorigenicity 18	AK032557|St18|240690|suppression of tumorigenicity 18	NM_173868|St18|240690|suppression of tumorigenicity 18
mm9_v1_chr12_+_106397899_106397916	0.0536941	LHX3,4.p2	AK136181|Tcl1b1|27379|T-cell leukemia/lymphoma 1B, 1	NM_013773|Tcl1b1|27379|T-cell leukemia/lymphoma 1B, 1	AF195488|Tcl1b1|27379|T-cell leukemia/lymphoma 1B, 1
mm9_v1_chr2_-_35959513_35959579	0.053599	LHX3,4.p2	BC065077|Lhx6|16874|LIM homeobox protein 6	AB031039|Lhx6|16874|LIM homeobox protein 6	AB031040|Lhx6|16874|LIM homeobox protein 6	NM_001083126|Lhx6|16874|LIM homeobox protein 6	NM_001083127|Lhx6|16874|LIM homeobox protein 6
mm9_v1_chrX_-_35254867_35254946	0.0523486	LHX3,4.p2	BC099963|Rhox9|104384|reproductive homeobox 9	BC099451|Rhox9|104384|reproductive homeobox 9	AF201698|Rhox9|104384|reproductive homeobox 9	DQ058646|Rhox9|104384|reproductive homeobox 9	NM_023894|Rhox9|104384|reproductive homeobox 9
mm9_v1_chr12_-_86097674_86097704	0.0519278	LHX3,4.p2	AK212383|Npc2|67963|Niemann Pick type C2	AK216457|Npc2|67963|Niemann Pick type C2
mm9_v1_chr17_+_18718690_18718690	0.0504336	LHX3,4.p2	NM_001104547|Vmn2r96|433070|vomeronasal 2, receptor 96
mm9_v1_chr5_-_94100392_94100534	0.0503488	LHX3,4.p2	BC085232|C87414|381654|expressed sequence C87414	AK163343|C87414|381654|expressed sequence C87414	NM_001164284|C87414|381654|expressed sequence C87414	NM_001164285|C87414|381654|expressed sequence C87414	AK139835|C87414|381654|expressed sequence C87414
mm9_v1_chr2_-_94252368_94252477	0.0499936	LHX3,4.p2	AK212083|Api5|11800|apoptosis inhibitor 5
mm9_v1_chr17_+_28046196_28046431	0.048845	LHX3,4.p2	BC050847|Anks1|224650|ankyrin repeat and SAM domain containing 1	NM_181413|Anks1|224650|ankyrin repeat and SAM domain containing 1	AK129094|Anks1|224650|ankyrin repeat and SAM domain containing 1	AK147273|Anks1|224650|ankyrin repeat and SAM domain containing 1
mm9_v1_chr5_-_121337533_121337629	0.0456991	LHX3,4.p2	X58077|Oas1g|23960|2'-5' oligoadenylate synthetase 1G	BC018470|Oas1g|23960|2'-5' oligoadenylate synthetase 1G	AF480417|Oas1g|23960|2'-5' oligoadenylate synthetase 1G	NM_011852|Oas1g|23960|2'-5' oligoadenylate synthetase 1G	BC043339|Oas1g|23960|2'-5' oligoadenylate synthetase 1G
mm9_v1_chr4_-_73566663_73566663	0.045546	LHX3,4.p2	NM_001126326|Gm11756|623281|predicted gene 11756
mm9_v1_chr15_-_8273428_8273486	0.0454692	LHX3,4.p2	AK135347|Nipbl|71175|Nipped-B homolog (Drosophila)
mm9_v1_chr4_-_144376485_144376485	0.043993	LHX3,4.p2	NM_001126316|Gm438|329993|predicted gene 438
mm9_v1_chr3_-_132545879_132545884	0.0432867	LHX3,4.p2	
mm9_v1_chr1_+_138311847_138311988	0.0425937	LHX3,4.p2	AK004833|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	NM_026500|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	AK013179|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	AK133731|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	AK076462|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	BC023840|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
mm9_v1_chr5_-_77544147_77544201	0.0419951	LHX3,4.p2	AF492703|Hopx|74318|HOP homeobox	NM_175606|Hopx|74318|HOP homeobox	AF534182|Hopx|74318|HOP homeobox
mm9_v1_chr6_-_71773747_71773805	0.0415029	LHX3,4.p2	AK039187|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010369|Mrpl35|66223|mitochondrial ribosomal protein L35	AK012807|Mrpl35|66223|mitochondrial ribosomal protein L35	AK004385|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010223|Mrpl35|66223|mitochondrial ribosomal protein L35	BC028750|Mrpl35|66223|mitochondrial ribosomal protein L35	NM_025430|Mrpl35|66223|mitochondrial ribosomal protein L35
mm9_v1_chr9_-_76171352_76171416	0.0380197	LHX3,4.p2	AY336084|Hcrtr2|387285|hypocretin (orexin) receptor 2	AY336085|Hcrtr2|387285|hypocretin (orexin) receptor 2	BC140957|Hcrtr2|387285|hypocretin (orexin) receptor 2	AK038551|Hcrtr2|387285|hypocretin (orexin) receptor 2	AK048781|Hcrtr2|387285|hypocretin (orexin) receptor 2	NM_198962|Hcrtr2|387285|hypocretin (orexin) receptor 2	AK079572|Hcrtr2|387285|hypocretin (orexin) receptor 2
mm9_v1_chr7_-_110926856_110926856	0.0371038	LHX3,4.p2	NM_013620|Olfr68|18369|olfactory receptor 68
mm9_v1_chrX_-_35087783_35087783	0.0369282	LHX3,4.p2	NM_001100465|Rhox2h|622301|reproductive homeobox 2H
mm9_v1_chr12_-_76836549_76836721	0.0349126	LHX3,4.p2	AF415215|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	BC037592|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	BC026814|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AF247177|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AK154116|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AK043586|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AK149860|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	NM_030750|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1
mm9_v1_chr16_+_88829238_88829254	0.0343376	LHX3,4.p2	AK132534|Krtap15|26560|keratin associated protein 15	NM_013713|Krtap15|26560|keratin associated protein 15	BC116219|Krtap15|26560|keratin associated protein 15
mm9_v1_chr18_-_6202199_6202203	0.033476	LHX3,4.p2	AK038217|Kif5b|16573|kinesin family member 5B
mm9_v1_chr7_+_16335718_16335725	0.0329002	LHX3,4.p2	NM_145709|Obox5|252829|oocyte specific homeobox 5	BC052664|Obox5|252829|oocyte specific homeobox 5
mm9_v1_chr14_-_73762933_73762949	0.0323907	LHX3,4.p2	AK002796|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr11_-_99464621_99464621	0.032012	LHX3,4.p2	NM_001127354|Gm11938|100041412|predicted gene 11938
mm9_v1_chrX_-_75491259_75491259	0.0313673	LHX3,4.p2	NM_001126321|Gm14743|236874|predicted gene 14743
mm9_v1_chr6_+_47870566_47870709	0.0312515	LHX3,4.p2	NM_001145881|Zfp212|232784|Zinc finger protein 212	NM_145576|Zfp212|232784|Zinc finger protein 212	BC088737|Zfp212|232784|Zinc finger protein 212	BC006693|Zfp212|232784|Zinc finger protein 212	AK129476|Zfp212|232784|Zinc finger protein 212
mm9_v1_chr5_-_93611701_93611836	0.031199	LHX3,4.p2	
mm9_v1_chr6_-_129628927_129628990	0.0310511	LHX3,4.p2	AF095447|Klrc1|16641|killer cell lectin-like receptor subfamily C, member 1	AF109782|Klrc1|16641|killer cell lectin-like receptor subfamily C, member 1	AF109783|Klrc1|16641|killer cell lectin-like receptor subfamily C, member 1	AF109784|Klrc1|16641|killer cell lectin-like receptor subfamily C, member 1	NM_001136068|Klrc1|16641|killer cell lectin-like receptor subfamily C, member 1	NM_010652|Klrc1|16641|killer cell lectin-like receptor subfamily C, member 1	AF106009|Klrc1|16641|killer cell lectin-like receptor subfamily C, member 1	AK138801|Klrc1|16641|killer cell lectin-like receptor subfamily C, member 1	AF106008|Klrc1|16641|killer cell lectin-like receptor subfamily C, member 1	BC145003|Klrc1|16641|killer cell lectin-like receptor subfamily C, member 1	BC145694|Klrc1|16641|killer cell lectin-like receptor subfamily C, member 1
mm9_v1_chr3_+_88520743_88520881	0.028884	LHX3,4.p2	NM_001163310|Rit1|19769|Ras-like without CAAX 1	NM_009069|Rit1|19769|Ras-like without CAAX 1	AK014126|Rit1|19769|Ras-like without CAAX 1	AK164196|Rit1|19769|Ras-like without CAAX 1	AK005357|Rit1|19769|Ras-like without CAAX 1	AK168254|Rit1|19769|Ras-like without CAAX 1	BC012694|Rit1|19769|Ras-like without CAAX 1	AK018785|Rit1|19769|Ras-like without CAAX 1	U71205|Rit1|19769|Ras-like without CAAX 1
mm9_v1_chr5_-_87061409_87061448	0.0286846	LHX3,4.p2	AK029032|Tmprss11f|243083|transmembrane protease, serine 11f	AK028587|Tmprss11f|243083|transmembrane protease, serine 11f	AK028447|Tmprss11f|243083|transmembrane protease, serine 11f	AK036957|Tmprss11f|243083|transmembrane protease, serine 11f	NM_178730|Tmprss11f|243083|transmembrane protease, serine 11f
mm9_v1_chr19_-_4439350_4439433	0.0285188	LHX3,4.p2	X84325|Rhod|11854|ras homolog gene family, member D	BC005652|Rhod|11854|ras homolog gene family, member D	AK008880|Rhod|11854|ras homolog gene family, member D	NM_007485|Rhod|11854|ras homolog gene family, member D	BC047989|Rhod|11854|ras homolog gene family, member D	D89821|Rhod|11854|ras homolog gene family, member D
mm9_v1_chr12_+_73885063_73885417	0.0283972	LHX3,4.p2	AK178989|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform	AK181077|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform
mm9_v1_chr2_+_162813260_162813281	0.0278307	LHX3,4.p2	AK136559|Sgk2|27219|serum/glucocorticoid regulated kinase 2	AF169033|Sgk2|27219|serum/glucocorticoid regulated kinase 2
mm9_v1_chr8_-_19892900_19893049	0.0275323	LHX3,4.p2	AK036306|2610005L07Rik|381598|cadherin 11 pseudogene	AK135487|6820431F20Rik|547150|cadherin 11 pseudogene	BC064022|2610005L07Rik|381598|cadherin 11 pseudogene	AK033345|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK170069|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK083828|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK012880|2610005L07Rik|381598|cadherin 11 pseudogene	AK167066|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK132389|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene
mm9_v1_chrX_+_150916544_150916544	0.0261384	LHX3,4.p2	AK016025|4930542N07Rik|75185|RIKEN cDNA 4930542N07 gene	NM_029199|4930542N07Rik|75185|RIKEN cDNA 4930542N07 gene
mm9_v1_chr6_+_86578269_86578294	0.025622	LHX3,4.p2	BC108357|Asprv1|67855|aspartic peptidase, retroviral-like 1
mm9_v1_chr8_-_64601861_64601991	0.02554	LHX3,4.p2	BC125319|Anxa10|26359|annexin A10	BC132207|Anxa10|26359|annexin A10	AJ238978|Anxa10|26359|annexin A10	AK168715|Anxa10|26359|annexin A10	NM_001136089|Anxa10|26359|annexin A10	AK131880|Anxa10|26359|annexin A10	AK008772|Anxa10|26359|annexin A10	AK008808|Anxa10|26359|annexin A10	AK020288|Anxa10|26359|annexin A10	NM_011922|Anxa10|26359|annexin A10	AK018597|Anxa10|26359|annexin A10	AK008930|Anxa10|26359|annexin A10
mm9_v1_chr18_-_58169723_58169818	0.0251782	LHX3,4.p2	BC063774|Fbn2|14119|fibrillin 2
mm9_v1_chr10_+_127759640_127759648	0.023566	LHX3,4.p2	AK013014|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK019927|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chrX_+_130722039_130722141	0.0233508	LHX3,4.p2	AK016872|Arl13a|74448|ADP-ribosylation factor-like 13A	NM_028947|Arl13a|74448|ADP-ribosylation factor-like 13A	BC100522|Arl13a|74448|ADP-ribosylation factor-like 13A
mm9_v1_chr11_-_87639611_87639615	0.0231726	LHX3,4.p2	BC016212|Lpo|76113|lactoperoxidase	NM_080420|Lpo|76113|lactoperoxidase
mm9_v1_chr17_+_35153523_35153582	0.0228292	LHX3,4.p2	AF134319|D17H6S56E-3|27762|DNA segment, Chr 17, human D6S56E 3	NM_138582|D17H6S56E-3|27762|DNA segment, Chr 17, human D6S56E 3	BC137792|D17H6S56E-3|27762|DNA segment, Chr 17, human D6S56E 3	BC144911|D17H6S56E-3|27762|DNA segment, Chr 17, human D6S56E 3
mm9_v1_chr7_-_111161213_111161263	0.0228148	LHX3,4.p2	NM_147084|Olfr639|259088|olfactory receptor 639	BC145837|Olfr639|259088|olfactory receptor 639
mm9_v1_chr1_+_172238933_172238992	0.0227362	LHX3,4.p2	AK005990|1700015E13Rik|76925|RIKEN cDNA 1700015E13 gene	BC099563|1700015E13Rik|76925|RIKEN cDNA 1700015E13 gene	NM_001039593|1700015E13Rik|76925|RIKEN cDNA 1700015E13 gene	BC132313|1700015E13Rik|76925|RIKEN cDNA 1700015E13 gene	BC132315|1700015E13Rik|76925|RIKEN cDNA 1700015E13 gene
mm9_v1_chr6_-_73419585_73419660	0.0215367	LHX3,4.p2	AK005631|4931417E11Rik|66740|RIKEN cDNA 4931417E11 gene	BC048456|4931417E11Rik|66740|RIKEN cDNA 4931417E11 gene	AK016460|4931417E11Rik|66740|RIKEN cDNA 4931417E11 gene	NM_025737|4931417E11Rik|66740|RIKEN cDNA 4931417E11 gene
mm9_v1_chr12_-_12948513_12948641	0.0206323	LHX3,4.p2	BC005453|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	AK144126|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	AK146913|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	AK146696|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	NM_008709|Mycn|18109|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
mm9_v1_chr13_-_93258004_93258035	0.0205882	LHX3,4.p2	AK134948|Zfyve16|218441|zinc finger, FYVE domain containing 16
mm9_v1_chr11_-_98300224_98300319	0.0204335	LHX3,4.p2	AK002959|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	AK009922|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	AK007795|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	AK041314|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	BC021589|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	NM_025559|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene
mm9_v1_chr10_+_19890580_19890589	0.0201056	LHX3,4.p2	AK138516|1700026H06Rik|70376|RIKEN cDNA 1700026H06 gene	AK138667|1700026H06Rik|70376|RIKEN cDNA 1700026H06 gene
mm9_v1_chr2_-_104857155_104857253	0.0198637	LHX3,4.p2	BC116787|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M	BC116789|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M	AK077480|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M	BC005598|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M	BC103795|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M	NM_145380|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M	AK168066|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M	AK084738|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M	AK146222|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M
mm9_v1_chr5_+_53174293_53174344	0.0189859	LHX3,4.p2	AK138997|Zcchc4|78796|zinc finger, CCHC domain containing 4	AK049511|Zcchc4|78796|zinc finger, CCHC domain containing 4	NM_030185|Zcchc4|78796|zinc finger, CCHC domain containing 4	AK019621|Zcchc4|78796|zinc finger, CCHC domain containing 4	AK143805|Zcchc4|78796|zinc finger, CCHC domain containing 4
mm9_v1_chr1_-_154472199_154472354	0.0152377	LHX3,4.p2	BC017678|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	NM_016846|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	U14103|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	AK169109|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	AK169180|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	AK144218|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1
mm9_v1_chr7_-_14422719_14422773	0.0151346	LHX3,4.p2	L02335|Sult2a1|20859|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 1	BC145167|Sult2a1|20859|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 1	L27121|Sult2a2|100043194|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 2	NM_001111296|Sult2a1|20859|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 1
mm9_v1_chr13_-_98786061_98786107	0.0150631	LHX3,4.p2	AK048676|Rgnef|110596|Rho-guanine nucleotide exchange factor
mm9_v1_chr7_+_24170907_24170919	0.0138073	LHX3,4.p2	AK087774|Nlrp5|23968|NLR family, pyrin domain containing 5	NM_001039143|Nlrp5|23968|NLR family, pyrin domain containing 5	NM_011860|Nlrp5|23968|NLR family, pyrin domain containing 5	BC053384|Nlrp5|23968|NLR family, pyrin domain containing 5
mm9_v1_chr17_+_12571455_12571482	0.0133231	LHX3,4.p2	BC014773|Plg|18815|plasminogen	NM_008877|Plg|18815|plasminogen
mm9_v1_chr4_-_73536983_73537015	0.013113	LHX3,4.p2	BC172045|Gm13871|667780|predicted gene 13871	NM_001085538|Gm11757|623272|predicted gene 11757	NM_001097978|Gm11758|545637|predicted gene 11758	NM_001177578|Gm13871|667780|predicted gene 13871
mm9_v1_chr4_-_73522137_73522169	0.013113	LHX3,4.p2	BC172045|Gm13871|667780|predicted gene 13871	NM_001085538|Gm11757|623272|predicted gene 11757	NM_001097978|Gm11758|545637|predicted gene 11758	NM_001177578|Gm13871|667780|predicted gene 13871
mm9_v1_chr4_-_73551824_73551856	0.013113	LHX3,4.p2	BC172045|Gm13871|667780|predicted gene 13871	NM_001085538|Gm11757|623272|predicted gene 11757	NM_001097978|Gm11758|545637|predicted gene 11758	NM_001177578|Gm13871|667780|predicted gene 13871
mm9_v1_chr9_-_105047257_105047411	0.0129976	LHX3,4.p2	FJ211595|1700080E11Rik|73532|RIKEN cDNA 1700080E11 gene	BC048436|1700080E11Rik|73532|RIKEN cDNA 1700080E11 gene	AK006953|1700080E11Rik|73532|RIKEN cDNA 1700080E11 gene	NM_028562|1700080E11Rik|73532|RIKEN cDNA 1700080E11 gene
mm9_v1_chr13_-_101556356_101556493	0.0123154	LHX3,4.p2	FJ931532|Ccnb1|268697|cyclin B1	AK143597|Ccnb1|268697|cyclin B1	BC080202|Ccnb1|268697|cyclin B1	X64713|Ccnb1|268697|cyclin B1	BC085238|Ccnb1|268697|cyclin B1	BC011478|Ccnb1|268697|cyclin B1	NM_172301|Ccnb1|268697|cyclin B1	X58708|Ccnb1|268697|cyclin B1	AK163259|Ccnb1|268697|cyclin B1	AK168993|Ccnb1|268697|cyclin B1	AK136259|Ccnb1|268697|cyclin B1	AK166686|Ccnb1|268697|cyclin B1	AK167950|Ccnb1|268697|cyclin B1	AK168441|Ccnb1|268697|cyclin B1	AK168502|Ccnb1|268697|cyclin B1	S43105|Ccnb1|268697|cyclin B1
mm9_v1_chr7_-_135034440_135034483	0.012173	LHX3,4.p2	AK220244|Prss53|330657|protease, serine, 53	BC147509|Prss53|330657|protease, serine, 53	BC151010|Prss53|330657|protease, serine, 53	BC151017|Prss53|330657|protease, serine, 53	BC172059|Prss53|330657|protease, serine, 53	NM_001081268|Prss53|330657|protease, serine, 53
mm9_v1_chr16_+_91465229_91465258	0.00904026	LHX3,4.p2	AK020819|A930006K02Rik|78433|RIKEN cDNA A930006K02 gene
mm9_v1_chr4_+_116393559_116393581	0.00692758	LHX3,4.p2	AK047755|Tesk2|230661|testis-specific kinase 2	NM_146151|Tesk2|230661|testis-specific kinase 2	AK031814|Tesk2|230661|testis-specific kinase 2	AK053368|Tesk2|230661|testis-specific kinase 2	BC029766|Tesk2|230661|testis-specific kinase 2
mm9_v1_chr4_+_150371205_150371241	0.00666282	LHX3,4.p2	AF172175|Uts2|24111|urotensin 2	NM_011910|Uts2|24111|urotensin 2	BC107299|Uts2|24111|urotensin 2	BC107300|Uts2|24111|urotensin 2	AY065984|Uts2|24111|urotensin 2
mm9_v1_chr6_+_86578225_86578230	0.0063419	LHX3,4.p2	AK160494|Asprv1|67855|aspartic peptidase, retroviral-like 1
mm9_v1_chr3_+_89908053_89908055	0.00618902	LHX3,4.p2	NM_029937|Nup210l|77595|nucleoporin 210-like	AK019752|Nup210l|77595|nucleoporin 210-like
mm9_v1_chr10_-_90579986_90580013	0.00612971	LHX3,4.p2	AK198800|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK190863|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK184040|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK191542|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK191799|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK194450|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK194768|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK200191|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK200546|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK200877|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK202780|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK203032|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK203930|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK213202|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK215444|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK193469|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK196032|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
mm9_v1_chr11_-_69730589_69730837	0.00597223	LHX3,4.p2	AK207553|Eif5a|276770|eukaryotic translation initiation factor 5A	AK211666|Eif5a|276770|eukaryotic translation initiation factor 5A	AK217079|Eif5a|276770|eukaryotic translation initiation factor 5A	AK189636|Eif5a|276770|eukaryotic translation initiation factor 5A	AK201607|Eif5a|276770|eukaryotic translation initiation factor 5A	AK213375|Eif5a|276770|eukaryotic translation initiation factor 5A	AK218644|Eif5a|276770|eukaryotic translation initiation factor 5A
mm9_v1_chr9_+_72859850_72859978	0.00370012	LHX3,4.p2	BC006717|Ccpg1|72278|cell cycle progression 1
mm9_v1_chr1_+_155599081_155599148	0.000838269	LHX3,4.p2	AK053125|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	AK054205|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
