mm9_v1_chr18_+_44493726_44493754	5.87444	MSX1,2.p2	AF230979|Myot|58916|myotilin	AK017447|Myot|58916|myotilin	NM_001033621|Myot|58916|myotilin	BC016214|Myot|58916|myotilin	BC064052|Myot|58916|myotilin
mm9_v1_chr1_+_45401303_45401332	5.72911	MSX1,2.p2	AK159868|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr5_-_44485951_44486006	5.66709	MSX1,2.p2	AF305215|Prom1|19126|prominin 1	AY099088|Prom1|19126|prominin 1	AY223521|Prom1|19126|prominin 1	AY223522|Prom1|19126|prominin 1	NM_001163578|Prom1|19126|prominin 1	NM_001163581|Prom1|19126|prominin 1	NM_001163582|Prom1|19126|prominin 1	NM_001163583|Prom1|19126|prominin 1	NM_001163584|Prom1|19126|prominin 1	NM_001163585|Prom1|19126|prominin 1
mm9_v1_chr1_+_51345952_51345993	4.7295	MSX1,2.p2	AK035324|Sdpr|20324|serum deprivation response	BC027005|Sdpr|20324|serum deprivation response	NM_138741|Sdpr|20324|serum deprivation response	AK132324|Sdpr|20324|serum deprivation response
mm9_v1_chr5_-_51848420_51848454	4.22097	MSX1,2.p2	AK032149|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK082685|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK043827|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm9_v1_chr1_+_45390415_45390462	3.83512	MSX1,2.p2	BC039923|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr8_+_96561135_96561146	3.82884	MSX1,2.p2	AK049824|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	BC040267|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1
mm9_v1_chr1_+_45401659_45401671	3.65582	MSX1,2.p2	AK079113|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr1_-_92740348_92740438	3.57214	MSX1,2.p2	AF064749|Col6a3|12835|collagen, type VI, alpha 3
mm9_v1_chr14_-_37911383_37911496	3.46798	MSX1,2.p2	AF426393|Cdhr1|170677|cadherin-related family member 1	BC042454|Cdhr1|170677|cadherin-related family member 1	AK143151|Cdhr1|170677|cadherin-related family member 1	BC058270|Cdhr1|170677|cadherin-related family member 1	NM_130878|Cdhr1|170677|cadherin-related family member 1
mm9_v1_chr8_+_96561097_96561129	3.30726	MSX1,2.p2	AK029629|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	NM_001093757|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	NM_177767|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	AK156765|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1
mm9_v1_chr8_+_96561162_96561175	3.22914	MSX1,2.p2	AK166343|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1
mm9_v1_chr3_+_17695743_17695745	3.17948	MSX1,2.p2	AK046405|6430547I21Rik|320521|RIKEN cDNA 6430547I21 gene	AK032443|6430547I21Rik|320521|RIKEN cDNA 6430547I21 gene
mm9_v1_chr7_+_31337558_31337578	3.09616	MSX1,2.p2	BC051228|Hspb6|243912|heat shock protein, alpha-crystallin-related, B6
mm9_v1_chr1_+_51346086_51346100	2.95001	MSX1,2.p2	AK084096|Sdpr|20324|serum deprivation response
mm9_v1_chr1_+_19198994_19199078	2.72837	MSX1,2.p2	AK017373|Tcfap2b|21419|transcription factor AP-2 beta	NM_009334|Tcfap2b|21419|transcription factor AP-2 beta	AK005128|Tcfap2b|21419|transcription factor AP-2 beta	AK028906|Tcfap2b|21419|transcription factor AP-2 beta	X78197|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr8_+_96561180_96561211	2.69112	MSX1,2.p2	AK122532|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	AK164189|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1
mm9_v1_chr4_+_135354137_135354188	2.65358	MSX1,2.p2	AK033394|Myom3|242702|myomesin family, member 3
mm9_v1_chr13_-_62959751_62959781	2.42667	MSX1,2.p2	AK168374|Fbp2|14120|fructose bisphosphatase 2	AK146946|Fbp2|14120|fructose bisphosphatase 2
mm9_v1_chr7_+_134356373_134356383	2.41843	MSX1,2.p2	U77943|Mylpf|17907|myosin light chain, phosphorylatable, fast skeletal muscle
mm9_v1_chr8_-_96560811_96560953	2.28062	MSX1,2.p2	AK204985|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	BC090834|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK146419|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK160147|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK012308|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK020150|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK019433|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK147061|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	BC008270|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK011688|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21	NM_026623|Nudt21|68219|nudix (nucleoside diphosphate linked moiety X)-type motif 21
mm9_v1_chr17_-_72102224_72102233	2.12061	MSX1,2.p2	BC046516|BC027072|225004|cDNA sequence BC027072	NM_146082|BC027072|225004|cDNA sequence BC027072	BC060373|BC027072|225004|cDNA sequence BC027072
mm9_v1_chr1_-_166368439_166368560	2.03926	MSX1,2.p2	EF437334|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr17_+_49754460_49754540	2.02569	MSX1,2.p2	AK083760|Kif6|319991|kinesin family member 6	NM_177052|Kif6|319991|kinesin family member 6	AK043404|Kif6|319991|kinesin family member 6
mm9_v1_chr13_-_62959656_62959744	2.00885	MSX1,2.p2	AJ132692|Fbp2|14120|fructose bisphosphatase 2	D42083|Fbp2|14120|fructose bisphosphatase 2	BC012720|Fbp2|14120|fructose bisphosphatase 2	AK166898|Fbp2|14120|fructose bisphosphatase 2	NM_007994|Fbp2|14120|fructose bisphosphatase 2	AK166973|Fbp2|14120|fructose bisphosphatase 2
mm9_v1_chr9_+_46721685_46721730	1.80952	MSX1,2.p2	AK038437|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	AK049847|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	AK013669|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	BC054400|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	AK140089|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene
mm9_v1_chr1_+_51346108_51346149	1.77622	MSX1,2.p2	S67386|Sdpr|20324|serum deprivation response	BC020008|Sdpr|20324|serum deprivation response
mm9_v1_chr19_+_56798916_56798947	1.57147	MSX1,2.p2	AK039569|Adrb1|11554|adrenergic receptor, beta 1
mm9_v1_chr3_-_91887051_91887065	1.54679	MSX1,2.p2	BC058223|Lor|16939|loricrin	BC026781|Lor|16939|loricrin	M34398|Lor|16939|loricrin	NM_008508|Lor|16939|loricrin
mm9_v1_chr7_+_138175581_138175593	1.45454	MSX1,2.p2	BC049835|Dmbt1|12945|deleted in malignant brain tumors 1	NM_007769|Dmbt1|12945|deleted in malignant brain tumors 1	U37438|Dmbt1|12945|deleted in malignant brain tumors 1	AB005909|Dmbt1|12945|deleted in malignant brain tumors 1
mm9_v1_chr2_+_25264823_25264862	1.43833	MSX1,2.p2	
mm9_v1_chrX_+_130385546_130385673	1.43059	MSX1,2.p2	BC049944|Tnmd|64103|tenomodulin	NM_022322|Tnmd|64103|tenomodulin	AF191768|Tnmd|64103|tenomodulin	AK003748|Tnmd|64103|tenomodulin	AF219993|Tnmd|64103|tenomodulin
mm9_v1_chr14_-_52530382_52530466	1.41491	MSX1,2.p2	AK076514|Ndrg2|29811|N-myc downstream regulated gene 2	AK173136|Ndrg2|29811|N-myc downstream regulated gene 2
mm9_v1_chr2_-_77357674_77357722	1.37379	MSX1,2.p2	AK078551|Zfp385b|241494|zinc finger protein 385B	AK050293|Zfp385b|241494|zinc finger protein 385B	NM_001113400|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr9_-_45743950_45744018	1.33151	MSX1,2.p2	BC003795|Tagln|21345|transgelin	AK002880|Tagln|21345|transgelin	L41154|Tagln|21345|transgelin	U36588|Tagln|21345|transgelin	AK077235|Tagln|21345|transgelin
mm9_v1_chr15_+_58770843_58770951	1.29684	MSX1,2.p2	AJ300739|Ndufb9|66218|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9
mm9_v1_chr1_-_137155012_137155048	1.28853	MSX1,2.p2	BC138692|Elf3|13710|E74-like factor 3	BC145380|Elf3|13710|E74-like factor 3	AF016294|Elf3|13710|E74-like factor 3	AK143135|Elf3|13710|E74-like factor 3	NM_001163131|Elf3|13710|E74-like factor 3	NM_007921|Elf3|13710|E74-like factor 3
mm9_v1_chr14_+_119187092_119187139	1.27933	MSX1,2.p2	NM_001160096|Cldn10|58187|claudin 10	NM_001160097|Cldn10|58187|claudin 10	NM_001160098|Cldn10|58187|claudin 10	NM_023878|Cldn10|58187|claudin 10	AK020131|Cldn10|58187|claudin 10	BC021770|Cldn10|58187|claudin 10
mm9_v1_chr10_-_61693914_61693931	1.26682	MSX1,2.p2	BC003872|Tspan15|70423|tetraspanin 15
mm9_v1_chrX_+_130385690_130385739	1.24689	MSX1,2.p2	AK014761|Tnmd|64103|tenomodulin	BC006919|Tnmd|64103|tenomodulin	AB055422|Tnmd|64103|tenomodulin
mm9_v1_chr12_-_77896481_77896489	1.22453	MSX1,2.p2	BC066825|Gpx2|14776|glutathione peroxidase 2	BC039658|Gpx2|14776|glutathione peroxidase 2
mm9_v1_chr6_+_125271356_125271401	1.18155	MSX1,2.p2	AK140389|Scnn1a|20276|sodium channel, nonvoltage-gated 1 alpha	NM_011324|Scnn1a|20276|sodium channel, nonvoltage-gated 1 alpha	BC022748|Scnn1a|20276|sodium channel, nonvoltage-gated 1 alpha
mm9_v1_chr8_-_49928495_49928639	1.17158	MSX1,2.p2	AK013771|2900073C17Rik|73020|RIKEN cDNA 2900073C17 gene
mm9_v1_chr11_+_70470701_70470714	1.14497	MSX1,2.p2	X70182|Eno3|13808|enolase 3, beta muscle	AK002485|Eno3|13808|enolase 3, beta muscle	NM_001136062|Eno3|13808|enolase 3, beta muscle	X57747|Eno3|13808|enolase 3, beta muscle
mm9_v1_chr11_-_20731016_20731238	1.13374	MSX1,2.p2	AK041053|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK167557|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	BC019131|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	NM_173752|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK156350|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene
mm9_v1_chr17_-_37727295_37727325	1.06484	MSX1,2.p2	NM_146287|Olfr114|258284|olfactory receptor 114	BC132209|Olfr114|258284|olfactory receptor 114	BC132573|Olfr114|258284|olfactory receptor 114
mm9_v1_chr6_+_112223751_112223811	1.06389	MSX1,2.p2	AK075847|Lmcd1|30937|LIM and cysteine-rich domains 1	NM_144799|Lmcd1|30937|LIM and cysteine-rich domains 1	AK159946|Lmcd1|30937|LIM and cysteine-rich domains 1	BC019124|Lmcd1|30937|LIM and cysteine-rich domains 1
mm9_v1_chrX_+_136335346_136335366	1.05362	MSX1,2.p2	NM_016675|Cldn2|12738|claudin 2	BC085494|Cldn2|12738|claudin 2
mm9_v1_chr9_-_103125934_103125973	1.04719	MSX1,2.p2	BC018573|Trf|22041|transferrin
mm9_v1_chrX_+_21292025_21292267	1.02318	MSX1,2.p2	NM_020049|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	AF161714|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	AF320226|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	AK018553|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	BC129908|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	BC129909|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	AB033285|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14
mm9_v1_chr8_-_37631772_37631789	1.00666	MSX1,2.p2	BC048730|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr1_+_159436875_159436945	0.989327	MSX1,2.p2	NM_033354|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	BC059194|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	AK173302|Sec16b|89867|SEC16 homolog B (S. cerevisiae)
mm9_v1_chr13_-_21384553_21384554	0.975335	MSX1,2.p2	AK029731|Gpx5|14780|glutathione peroxidase 5	BC100749|Gpx5|14780|glutathione peroxidase 5	BC103588|Gpx5|14780|glutathione peroxidase 5	BC103589|Gpx5|14780|glutathione peroxidase 5	BC105648|Gpx5|14780|glutathione peroxidase 5	NM_010343|Gpx5|14780|glutathione peroxidase 5
mm9_v1_chrX_-_92361778_92361824	0.974648	MSX1,2.p2	AK038840|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	AK122280|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	AK139416|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	NM_001033329|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9
mm9_v1_chr11_+_61022240_61022343	0.96786	MSX1,2.p2	AK144241|Aldh3a1|11670|aldehyde dehydrogenase family 3, subfamily A1	NM_001112725|Aldh3a1|11670|aldehyde dehydrogenase family 3, subfamily A1	NM_007436|Aldh3a1|11670|aldehyde dehydrogenase family 3, subfamily A1	U12785|Aldh3a1|11670|aldehyde dehydrogenase family 3, subfamily A1	AF072815|Aldh3a1|11670|aldehyde dehydrogenase family 3, subfamily A1	BC144946|Aldh3a1|11670|aldehyde dehydrogenase family 3, subfamily A1	BC150677|Aldh3a1|11670|aldehyde dehydrogenase family 3, subfamily A1
mm9_v1_chr4_-_106979732_106979773	0.945495	MSX1,2.p2	AK002549|Dio1|13370|deiodinase, iodothyronine, type I	BC089608|Dio1|13370|deiodinase, iodothyronine, type I	NM_007860|Dio1|13370|deiodinase, iodothyronine, type I	U49861|Dio1|13370|deiodinase, iodothyronine, type I	BC019786|Dio1|13370|deiodinase, iodothyronine, type I	BC037080|Dio1|13370|deiodinase, iodothyronine, type I
mm9_v1_chr19_+_25746900_25746909	0.938169	MSX1,2.p2	AF539811|Dmrt2|226049|doublesex and mab-3 related transcription factor 2	AK044891|Dmrt2|226049|doublesex and mab-3 related transcription factor 2	NM_145831|Dmrt2|226049|doublesex and mab-3 related transcription factor 2	AK140347|Dmrt2|226049|doublesex and mab-3 related transcription factor 2	AK140337|Dmrt2|226049|doublesex and mab-3 related transcription factor 2
mm9_v1_chr2_-_62411970_62412077	0.928962	MSX1,2.p2	BC019190|Fap|14089|fibroblast activation protein	AK051959|Fap|14089|fibroblast activation protein	NM_007986|Fap|14089|fibroblast activation protein	Y10007|Fap|14089|fibroblast activation protein
mm9_v1_chr12_-_77896410_77896435	0.915063	MSX1,2.p2	BC010823|Gpx2|14776|glutathione peroxidase 2	AK131940|Gpx2|14776|glutathione peroxidase 2
mm9_v1_chr6_+_30400873_30400960	0.891715	MSX1,2.p2	
mm9_v1_chrX_-_92361694_92361718	0.887293	MSX1,2.p2	BC067031|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9
mm9_v1_chr6_-_57485419_57485488	0.886581	MSX1,2.p2	BC092238|Ppm1k|243382|protein phosphatase 1K (PP2C domain containing)	NM_175523|Ppm1k|243382|protein phosphatase 1K (PP2C domain containing)	AK044610|Ppm1k|243382|protein phosphatase 1K (PP2C domain containing)
mm9_v1_chr9_-_45744036_45744140	0.876397	MSX1,2.p2	NM_011526|Tagln|21345|transgelin
mm9_v1_chr3_+_97432797_97432807	0.854044	MSX1,2.p2	BC022991|Fmo5|14263|flavin containing monooxygenase 5
mm9_v1_chr9_+_5345475_5345506	0.840912	MSX1,2.p2	AK077256|Casp12|12364|caspase 12	AK080045|Casp12|12364|caspase 12	NM_009808|Casp12|12364|caspase 12	AK046681|Casp12|12364|caspase 12	BC028979|Casp12|12364|caspase 12	AK161525|Casp12|12364|caspase 12	AK053407|Casp12|12364|caspase 12	AK030309|Casp12|12364|caspase 12	AY675223|Casp12|12364|caspase 12	AY675224|Casp12|12364|caspase 12
mm9_v1_chr11_+_60351159_60351225	0.826471	MSX1,2.p2	NM_172943|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)
mm9_v1_chrX_+_160577312_160577325	0.816842	MSX1,2.p2	EF408739|Ace2|70008|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	EF408740|Ace2|70008|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
mm9_v1_chr8_-_73919683_73919738	0.780081	MSX1,2.p2	BC026453|Ushbp1|234395|Usher syndrome 1C binding protein 1	AK043798|Ushbp1|234395|Usher syndrome 1C binding protein 1	NM_181418|Ushbp1|234395|Usher syndrome 1C binding protein 1	AK034939|Ushbp1|234395|Usher syndrome 1C binding protein 1
mm9_v1_chr11_+_112643501_112643595	0.722682	MSX1,2.p2	NM_011448|Sox9|20682|SRY-box containing gene 9	AK049986|Sox9|20682|SRY-box containing gene 9	AK030187|Sox9|20682|SRY-box containing gene 9	AK031516|Sox9|20682|SRY-box containing gene 9	BC023796|Sox9|20682|SRY-box containing gene 9	BC023808|Sox9|20682|SRY-box containing gene 9	BC024958|Sox9|20682|SRY-box containing gene 9	BC023953|Sox9|20682|SRY-box containing gene 9	AK220197|Sox9|20682|SRY-box containing gene 9	BC034264|Sox9|20682|SRY-box containing gene 9
mm9_v1_chr7_-_127345462_127345501	0.687305	MSX1,2.p2	BC045159|Crym|12971|crystallin, mu	AK138422|Crym|12971|crystallin, mu	AK163781|Crym|12971|crystallin, mu	AK143116|Crym|12971|crystallin, mu	AK163801|Crym|12971|crystallin, mu	AF039391|Crym|12971|crystallin, mu	NM_016669|Crym|12971|crystallin, mu
mm9_v1_chrX_-_159402493_159402530	0.686801	MSX1,2.p2	AF136283|S100g|12309|S100 calcium binding protein G	AF028071|S100g|12309|S100 calcium binding protein G	AK146558|S100g|12309|S100 calcium binding protein G	AF293948|S100g|12309|S100 calcium binding protein G	AF293949|S100g|12309|S100 calcium binding protein G	NM_009789|S100g|12309|S100 calcium binding protein G
mm9_v1_chr13_+_9171776_9171813	0.675565	MSX1,2.p2	AK148903|Larp4b|217980|La ribonucleoprotein domain family, member 4B
mm9_v1_chr3_+_159502646_159502709	0.673661	MSX1,2.p2	BC075615|Wls|68151|wntless homolog (Drosophila)	NM_026582|Wls|68151|wntless homolog (Drosophila)	AK029053|Wls|68151|wntless homolog (Drosophila)	AK044810|Wls|68151|wntless homolog (Drosophila)	AK019886|Wls|68151|wntless homolog (Drosophila)	AK029104|Wls|68151|wntless homolog (Drosophila)	AK029315|Wls|68151|wntless homolog (Drosophila)	AK031444|Wls|68151|wntless homolog (Drosophila)	AK049842|Wls|68151|wntless homolog (Drosophila)	AK128912|Wls|68151|wntless homolog (Drosophila)	AK159207|Wls|68151|wntless homolog (Drosophila)	AK159977|Wls|68151|wntless homolog (Drosophila)	AK077407|Wls|68151|wntless homolog (Drosophila)
mm9_v1_chr16_+_43247396_43247452	0.668052	MSX1,2.p2	AK005028|Zbtb20|56490|zinc finger and BTB domain containing 20	NM_019778|Zbtb20|56490|zinc finger and BTB domain containing 20	NM_181058|Zbtb20|56490|zinc finger and BTB domain containing 20	BC031114|Zbtb20|56490|zinc finger and BTB domain containing 20
mm9_v1_chr6_-_58974400_58974495	0.659095	MSX1,2.p2	BC005554|Fam13a|58909|family with sequence similarity 13, member A	BC060978|Fam13a|58909|family with sequence similarity 13, member A	AK052421|Fam13a|58909|family with sequence similarity 13, member A	BC054053|Fam13a|58909|family with sequence similarity 13, member A	AJ510136|Fam13a|58909|family with sequence similarity 13, member A	AK054311|Fam13a|58909|family with sequence similarity 13, member A	BC080861|Fam13a|58909|family with sequence similarity 13, member A	NM_153574|Fam13a|58909|family with sequence similarity 13, member A
mm9_v1_chr14_-_69151731_69151797	0.656118	MSX1,2.p2	AF013107|Adam7|11500|a disintegrin and metallopeptidase domain 7	AK136692|Adam7|11500|a disintegrin and metallopeptidase domain 7	NM_007402|Adam7|11500|a disintegrin and metallopeptidase domain 7	AK020312|Adam7|11500|a disintegrin and metallopeptidase domain 7
mm9_v1_chr9_+_46036703_46036712	0.650364	MSX1,2.p2	NM_009692|Apoa1|11806|apolipoprotein A-I
mm9_v1_chr14_+_66963139_66963219	0.639446	MSX1,2.p2	BC014707|Stmn4|56471|stathmin-like 4	BC046752|Stmn4|56471|stathmin-like 4	NM_019675|Stmn4|56471|stathmin-like 4
mm9_v1_chr1_-_42749940_42749978	0.636799	MSX1,2.p2	BC059892|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	BC058417|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr14_+_55050437_55050513	0.634835	MSX1,2.p2	AK155117|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK088476|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK165014|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	NM_008608|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK163601|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	BC076638|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	U54984|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK149907|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK040968|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK138611|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK134340|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK149636|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)
mm9_v1_chr10_+_61155793_61155924	0.631086	MSX1,2.p2	
mm9_v1_chr6_+_58783693_58783693	0.62772	MSX1,2.p2	BC042574|Herc3|73998|hect domain and RLD 3	BC145978|Herc3|73998|hect domain and RLD 3	BC145980|Herc3|73998|hect domain and RLD 3	NM_028705|Herc3|73998|hect domain and RLD 3
mm9_v1_chr11_-_73138102_73138139	0.621025	MSX1,2.p2	BC024934|Aspa|11484|aspartoacylase	AK002859|Aspa|11484|aspartoacylase	AK008354|Aspa|11484|aspartoacylase	NM_023113|Aspa|11484|aspartoacylase
mm9_v1_chr5_+_130263548_130263603	0.619114	MSX1,2.p2	AK199226|Gbas|14467|glioblastoma amplified sequence
mm9_v1_chr16_+_14705932_14706066	0.610547	MSX1,2.p2	AK133968|Snai2|20583|snail homolog 2 (Drosophila)	BC062164|Snai2|20583|snail homolog 2 (Drosophila)	NM_011415|Snai2|20583|snail homolog 2 (Drosophila)	U79550|Snai2|20583|snail homolog 2 (Drosophila)	U97059|Snai2|20583|snail homolog 2 (Drosophila)
mm9_v1_chr12_-_77896363_77896387	0.587988	MSX1,2.p2	BC054848|Gpx2|14776|glutathione peroxidase 2	BC034335|Gpx2|14776|glutathione peroxidase 2
mm9_v1_chr19_-_34316029_34316112	0.587191	MSX1,2.p2	AK080187|Acta2|11475|actin, alpha 2, smooth muscle, aorta	AK137170|Acta2|11475|actin, alpha 2, smooth muscle, aorta
mm9_v1_chr10_-_6606128_6606213	0.585995	MSX1,2.p2	AK033676|Plekhg1|213783|pleckstrin homology domain containing, family G (with RhoGef domain) member 1	AK034403|Plekhg1|213783|pleckstrin homology domain containing, family G (with RhoGef domain) member 1	NM_001159942|Plekhg1|213783|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
mm9_v1_chr8_+_72696276_72696336	0.571062	MSX1,2.p2	AK032711|Tmem161a|234371|transmembrane protein 161A	AK082916|Tmem161a|234371|transmembrane protein 161A	AK049979|Tmem161a|234371|transmembrane protein 161A	NM_145597|Tmem161a|234371|transmembrane protein 161A	AK082758|Tmem161a|234371|transmembrane protein 161A	AK147962|Tmem161a|234371|transmembrane protein 161A	AK088569|Tmem161a|234371|transmembrane protein 161A	AK167517|Tmem161a|234371|transmembrane protein 161A	BC021367|Tmem161a|234371|transmembrane protein 161A
mm9_v1_chr8_-_114400574_114400649	0.569607	MSX1,2.p2	AK018496|Tmem170|66817|transmembrane protein 170	NM_025781|Tmem170|66817|transmembrane protein 170	AK007926|Tmem170|66817|transmembrane protein 170	BC139377|Tmem170|66817|transmembrane protein 170	BC145964|Tmem170|66817|transmembrane protein 170
mm9_v1_chr16_-_38800293_38800318	0.562522	MSX1,2.p2	BC046604|Upk1b|22268|uroplakin 1B	AK083101|Upk1b|22268|uroplakin 1B	AK086926|Upk1b|22268|uroplakin 1B	AK053004|Upk1b|22268|uroplakin 1B	NM_178924|Upk1b|22268|uroplakin 1B
mm9_v1_chr10_+_97110043_97110069	0.556558	MSX1,2.p2	AK137179|Epyc|13516|epiphycan	D78274|Epyc|13516|epiphycan
mm9_v1_chr11_-_70501430_70501474	0.546306	MSX1,2.p2	AK039670|Camta2|216874|calmodulin binding transcription activator 2	BC049133|Camta2|216874|calmodulin binding transcription activator 2	BC056395|Camta2|216874|calmodulin binding transcription activator 2	AK169118|Camta2|216874|calmodulin binding transcription activator 2	AK150186|Camta2|216874|calmodulin binding transcription activator 2
mm9_v1_chr5_-_84846256_84846332	0.534748	MSX1,2.p2	AK089143|Epha5|13839|Eph receptor A5
mm9_v1_chr5_-_84846348_84846408	0.531605	MSX1,2.p2	BC057401|Epha5|13839|Eph receptor A5	AK133698|Epha5|13839|Eph receptor A5	AK034289|Epha5|13839|Eph receptor A5	AK049740|Epha5|13839|Eph receptor A5	NM_007937|Epha5|13839|Eph receptor A5
mm9_v1_chrX_+_160577257_160577273	0.529807	MSX1,2.p2	NM_001130513|Ace2|70008|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
mm9_v1_chr3_-_27316628_27316630	0.529015	MSX1,2.p2	AK039335|Fndc3b|72007|fibronectin type III domain containing 3B
mm9_v1_chr8_+_106625524_106625609	0.521845	MSX1,2.p2	NM_009868|Cdh5|12562|cadherin 5	AK164474|Cdh5|12562|cadherin 5	D63942|Cdh5|12562|cadherin 5	AK167620|Cdh5|12562|cadherin 5	BC054790|Cdh5|12562|cadherin 5	X83930|Cdh5|12562|cadherin 5
mm9_v1_chr8_-_109589522_109589543	0.520285	MSX1,2.p2	AK007830|Tmed6|66269|transmembrane emp24 protein transport domain containing 6	AK007320|Tmed6|66269|transmembrane emp24 protein transport domain containing 6	AK007518|Tmed6|66269|transmembrane emp24 protein transport domain containing 6	AK007885|Tmed6|66269|transmembrane emp24 protein transport domain containing 6	BC086923|Tmed6|66269|transmembrane emp24 protein transport domain containing 6	NM_025458|Tmed6|66269|transmembrane emp24 protein transport domain containing 6
mm9_v1_chr17_-_74242984_74243003	0.512356	MSX1,2.p2	BC003997|Xdh|22436|xanthine dehydrogenase
mm9_v1_chr1_-_155698278_155698324	0.505393	MSX1,2.p2	BC120491|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	BC131905|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	AJ554213|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	AK136655|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	AK136685|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	DQ402363|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	NM_178243|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene
mm9_v1_chr7_+_148646992_148647040	0.493519	MSX1,2.p2	BC048916|Efcab4a|213573|EF-hand calcium binding domain 4A	NM_001025103|Efcab4a|213573|EF-hand calcium binding domain 4A	BC098333|Efcab4a|213573|EF-hand calcium binding domain 4A
mm9_v1_chr9_+_46036788_46036792	0.49262	MSX1,2.p2	AK076187|Apoa1|11806|apolipoprotein A-I	AK131864|Apoa1|11806|apolipoprotein A-I	AK149576|Apoa1|11806|apolipoprotein A-I	AK161536|Apoa1|11806|apolipoprotein A-I	X64262|Apoa1|11806|apolipoprotein A-I
mm9_v1_chr14_+_119380708_119380718	0.487264	MSX1,2.p2	
mm9_v1_chr1_-_94076857_94076917	0.484162	MSX1,2.p2	AK155250|Hdac4|208727|histone deacetylase 4
mm9_v1_chrX_+_9829439_9829558	0.479236	MSX1,2.p2	AK050930|Otc|18416|ornithine transcarbamylase	NM_008769|Otc|18416|ornithine transcarbamylase	BC024893|Otc|18416|ornithine transcarbamylase	M17030|Otc|18416|ornithine transcarbamylase
mm9_v1_chrX_-_159402465_159402479	0.464277	MSX1,2.p2	BC010751|S100g|12309|S100 calcium binding protein G
mm9_v1_chr7_-_16465217_16465303	0.456551	MSX1,2.p2	BC016502|Crx|12951|cone-rod homeobox containing gene	AK053533|Crx|12951|cone-rod homeobox containing gene	U77615|Crx|12951|cone-rod homeobox containing gene	NM_007770|Crx|12951|cone-rod homeobox containing gene
mm9_v1_chr3_+_159262144_159262196	0.453368	MSX1,2.p2	NM_029987|Rpe65|19892|retinal pigment epithelium 65	AK020906|Rpe65|19892|retinal pigment epithelium 65	BC090656|Rpe65|19892|retinal pigment epithelium 65	BC130028|Rpe65|19892|retinal pigment epithelium 65	AF410461|Rpe65|19892|retinal pigment epithelium 65
mm9_v1_chr4_-_151692589_151692733	0.446845	MSX1,2.p2	BC023223|Rnf207|433809|ring finger protein 207	BC141256|Rnf207|433809|ring finger protein 207	BC141257|Rnf207|433809|ring finger protein 207	AK042379|Rnf207|433809|ring finger protein 207	BC022631|Rnf207|433809|ring finger protein 207	AK052224|Rnf207|433809|ring finger protein 207	NM_001033489|Rnf207|433809|ring finger protein 207
mm9_v1_chr11_+_110829346_110829387	0.443182	MSX1,2.p2	AK078905|Kcnj16|16517|potassium inwardly-rectifying channel, subfamily J, member 16	AK128942|Kcnj16|16517|potassium inwardly-rectifying channel, subfamily J, member 16	NM_010604|Kcnj16|16517|potassium inwardly-rectifying channel, subfamily J, member 16	BC033442|Kcnj16|16517|potassium inwardly-rectifying channel, subfamily J, member 16
mm9_v1_chr3_-_29911982_29912077	0.44281	MSX1,2.p2	AK051098|Mecom|14013|MDS1 and EVI1 complex locus	BC076620|Mecom|14013|MDS1 and EVI1 complex locus
mm9_v1_chr6_+_97879810_97879849	0.429835	MSX1,2.p2	NM_001178049|Mitf|17342|microphthalmia-associated transcription factor	AK052895|Mitf|17342|microphthalmia-associated transcription factor	U19874|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr18_-_44821919_44821954	0.421242	MSX1,2.p2	AK054528|Mcc|328949|mutated in colorectal cancers	NM_001085374|Mcc|328949|mutated in colorectal cancers	AK086823|Mcc|328949|mutated in colorectal cancers
mm9_v1_chr14_+_118559355_118559360	0.412131	MSX1,2.p2	AK040165|Gpr180|58245|G protein-coupled receptor 180
mm9_v1_chr15_-_98780503_98780728	0.411195	MSX1,2.p2	AK199768|Tuba1a|22142|tubulin, alpha 1A	AK216974|Tuba1a|22142|tubulin, alpha 1A
mm9_v1_chr18_-_38443954_38444055	0.408032	MSX1,2.p2	BC127076|Pcdh12|53601|protocadherin 12	Y08715|Pcdh12|53601|protocadherin 12	AK048100|Pcdh12|53601|protocadherin 12	NM_017378|Pcdh12|53601|protocadherin 12	AK028374|Pcdh12|53601|protocadherin 12
mm9_v1_chr12_-_104480335_104480355	0.402572	MSX1,2.p2	BC145454|Prima1|170952|proline rich membrane anchor 1	BC171927|Prima1|170952|proline rich membrane anchor 1	BC171928|Prima1|170952|proline rich membrane anchor 1	BC171929|Prima1|170952|proline rich membrane anchor 1	BC134395|Prima1|170952|proline rich membrane anchor 1	AK140034|Prima1|170952|proline rich membrane anchor 1	AY043275|Prima1|170952|proline rich membrane anchor 1	AY225515|Prima1|170952|proline rich membrane anchor 1	NM_133364|Prima1|170952|proline rich membrane anchor 1
mm9_v1_chr16_-_29541568_29541568	0.399627	MSX1,2.p2	BC048410|Atp13a4|224079|ATPase type 13A4	NM_001164612|Atp13a4|224079|ATPase type 13A4	NM_172613|Atp13a4|224079|ATPase type 13A4
mm9_v1_chr14_+_37881214_37881259	0.39837	MSX1,2.p2	BC037728|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	AK044611|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	AK044383|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	NM_173418|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	BC057628|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2
mm9_v1_chr18_+_37602153_37602224	0.387305	MSX1,2.p2	BC138123|Pcdhb13|93884|protocadherin beta 13	BC138124|Pcdhb13|93884|protocadherin beta 13	AK082435|Pcdhb13|93884|protocadherin beta 13	NM_053138|Pcdhb13|93884|protocadherin beta 13	AY013774|Pcdhb13|93884|protocadherin beta 13
mm9_v1_chr12_-_77896534_77896540	0.367887	MSX1,2.p2	NM_030677|Gpx2|14776|glutathione peroxidase 2
mm9_v1_chr10_-_24919916_24919967	0.360508	MSX1,2.p2	AK086696|Akap7|432442|A kinase (PRKA) anchor protein 7	AK085630|Akap7|432442|A kinase (PRKA) anchor protein 7	AK139238|Akap7|432442|A kinase (PRKA) anchor protein 7
mm9_v1_chr3_+_82811802_82811817	0.352749	MSX1,2.p2	BC019828|Fgg|99571|fibrinogen gamma chain	BC019506|Fgg|99571|fibrinogen gamma chain	NM_133862|Fgg|99571|fibrinogen gamma chain
mm9_v1_chr18_-_25637786_25637794	0.350945	MSX1,2.p2	AK078071|Celf4|108013|CUGBP, Elav-like family member 4
mm9_v1_chr13_-_100785524_100785589	0.34625	MSX1,2.p2	BC027640|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK146865|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK145564|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK146844|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	BC141193|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	BC141194|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK132265|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
mm9_v1_chr3_-_57098670_57098869	0.337987	MSX1,2.p2	L15429|Tm4sf1|17112|transmembrane 4 superfamily member 1	L15443|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK133556|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK077326|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK164718|Tm4sf1|17112|transmembrane 4 superfamily member 1
mm9_v1_chr3_+_97432773_97432782	0.309834	MSX1,2.p2	AK133675|Fmo5|14263|flavin containing monooxygenase 5
mm9_v1_chr9_+_8899832_8899832	0.300953	MSX1,2.p2	NM_008829|Pgr|18667|progesterone receptor
mm9_v1_chr9_-_55983967_55984081	0.294884	MSX1,2.p2	AK212733|Tspan3|56434|tetraspanin 3	AK206202|Tspan3|56434|tetraspanin 3	AK211000|Tspan3|56434|tetraspanin 3	AK216580|Tspan3|56434|tetraspanin 3	AK219763|Tspan3|56434|tetraspanin 3	AK219867|Tspan3|56434|tetraspanin 3	AK206891|Tspan3|56434|tetraspanin 3	AK219936|Tspan3|56434|tetraspanin 3
mm9_v1_chr18_-_61874531_61874583	0.292181	MSX1,2.p2	BC024866|Grpel2|17714|GrpE-like 2, mitochondrial
mm9_v1_chr14_+_55050530_55050726	0.2783	MSX1,2.p2	X83536|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK149988|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	DQ249870|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK198018|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)
mm9_v1_chr2_+_74536030_74536036	0.277625	MSX1,2.p2	AK134427|Hoxd9|15438|homeobox D9
mm9_v1_chrX_-_141884479_141884623	0.269955	MSX1,2.p2	AK053987|Amot|27494|angiomotin
mm9_v1_chr18_-_35374531_35374610	0.250541	MSX1,2.p2	AK043173|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK046818|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK049920|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK043784|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2
mm9_v1_chrM_+_12383_12506	0.246137	MSX1,2.p2	
mm9_v1_chr4_+_57907600_57907648	0.242614	MSX1,2.p2	BC034188|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr9_-_29770699_29770842	0.236562	MSX1,2.p2	AK138263|Ntm|235106|neurotrimin	AK045973|Ntm|235106|neurotrimin	AK046377|Ntm|235106|neurotrimin	NM_172290|Ntm|235106|neurotrimin	AK042854|Ntm|235106|neurotrimin	AK140516|Ntm|235106|neurotrimin	AK020998|Ntm|235106|neurotrimin	AK020745|Ntm|235106|neurotrimin
mm9_v1_chrX_-_98254969_98254977	0.227429	MSX1,2.p2	AK082794|Tex11|83558|testis expressed gene 11	BC116709|Tex11|83558|testis expressed gene 11	AF285572|Tex11|83558|testis expressed gene 11	AK029799|Tex11|83558|testis expressed gene 11	NM_001167997|Tex11|83558|testis expressed gene 11	NM_031384|Tex11|83558|testis expressed gene 11
mm9_v1_chr2_+_97306600_97306623	0.2274	MSX1,2.p2	
mm9_v1_chr13_+_21404071_21404118	0.219613	MSX1,2.p2	NM_145451|Gpx6|75512|glutathione peroxidase 6	BC013526|Gpx6|75512|glutathione peroxidase 6
mm9_v1_chr18_+_37828606_37828758	0.212375	MSX1,2.p2	AB093250|Pcdhga2|93710|protocadherin gamma subfamily A, 2	BC139178|Pcdhga2|93710|protocadherin gamma subfamily A, 2	AY013796|Pcdhga2|93710|protocadherin gamma subfamily A, 2	NM_033585|Pcdhga2|93710|protocadherin gamma subfamily A, 2
mm9_v1_chr13_+_45485106_45485325	0.203288	MSX1,2.p2	AK034887|Mylip|218203|myosin regulatory light chain interacting protein	AK159478|Mylip|218203|myosin regulatory light chain interacting protein	NM_153789|Mylip|218203|myosin regulatory light chain interacting protein	AK171888|Mylip|218203|myosin regulatory light chain interacting protein	BC010206|Mylip|218203|myosin regulatory light chain interacting protein	AY434449|Mylip|218203|myosin regulatory light chain interacting protein	NM_181043|Mylip|218203|myosin regulatory light chain interacting protein
mm9_v1_chr4_-_62815137_62815208	0.197071	MSX1,2.p2	X68680|Ambp|11699|alpha 1 microglobulin/bikunin	AK004907|Ambp|11699|alpha 1 microglobulin/bikunin	D28812|Ambp|11699|alpha 1 microglobulin/bikunin	NM_007443|Ambp|11699|alpha 1 microglobulin/bikunin	BC021660|Ambp|11699|alpha 1 microglobulin/bikunin
mm9_v1_chr8_+_107872157_107872157	0.196776	MSX1,2.p2	NM_001081332|Slc9a5|277973|solute carrier family 9 (sodium/hydrogen exchanger), member 5
mm9_v1_chr10_-_88720534_88720534	0.195842	MSX1,2.p2	BC065114|Ano4|320091|anoctamin 4	NM_178773|Ano4|320091|anoctamin 4
mm9_v1_chr10_-_53638995_53639134	0.189962	MSX1,2.p2	AK204950|Man1a|17155|mannosidase 1, alpha	AK192972|Man1a|17155|mannosidase 1, alpha	AK191835|Man1a|17155|mannosidase 1, alpha	AK196316|Man1a|17155|mannosidase 1, alpha	AK196883|Man1a|17155|mannosidase 1, alpha	AK201818|Man1a|17155|mannosidase 1, alpha	AK211829|Man1a|17155|mannosidase 1, alpha
mm9_v1_chr4_+_139178802_139178820	0.186608	MSX1,2.p2	BC060650|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1	NM_175438|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1
mm9_v1_chr11_-_76592473_76592508	0.18444	MSX1,2.p2	AK052903|Cpd|12874|carboxypeptidase D
mm9_v1_chr7_-_110926856_110926856	0.181001	MSX1,2.p2	NM_013620|Olfr68|18369|olfactory receptor 68
mm9_v1_chr3_+_136566015_136566156	0.177645	MSX1,2.p2	AK076570|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr19_-_7785715_7785799	0.17672	MSX1,2.p2	AF529221|Slc22a19|207151|solute carrier family 22 (organic anion transporter), member 19	BC021384|Slc22a19|207151|solute carrier family 22 (organic anion transporter), member 19	AK052752|Slc22a19|207151|solute carrier family 22 (organic anion transporter), member 19	AK052603|Slc22a19|207151|solute carrier family 22 (organic anion transporter), member 19	NM_144785|Slc22a19|207151|solute carrier family 22 (organic anion transporter), member 19
mm9_v1_chr2_-_155127037_155127091	0.175885	MSX1,2.p2	BC013076|Pigu|228812|phosphatidylinositol glycan anchor biosynthesis, class U
mm9_v1_chr1_-_20608010_20608144	0.171439	MSX1,2.p2	AY438374|Pkhd1|241035|polycystic kidney and hepatic disease 1	AK143992|Pkhd1|241035|polycystic kidney and hepatic disease 1	AY130764|Pkhd1|241035|polycystic kidney and hepatic disease 1	NM_153179|Pkhd1|241035|polycystic kidney and hepatic disease 1	AK052698|Pkhd1|241035|polycystic kidney and hepatic disease 1
mm9_v1_chr16_-_93930061_93930061	0.17078	MSX1,2.p2	NM_001165926|Cldn14|56173|claudin 14
mm9_v1_chr3_+_19857053_19857266	0.161502	MSX1,2.p2	BC062957|Cp|12870|ceruloplasmin	NM_001042611|Cp|12870|ceruloplasmin	NM_007752|Cp|12870|ceruloplasmin	DQ336396|Cp|12870|ceruloplasmin	AK014835|Cp|12870|ceruloplasmin	AK043248|Cp|12870|ceruloplasmin	U49430|Cp|12870|ceruloplasmin	AK149523|Cp|12870|ceruloplasmin
mm9_v1_chr18_+_37637421_37637642	0.159359	MSX1,2.p2	NM_053141|Pcdhb16|93887|protocadherin beta 16	AK030612|Pcdhb16|93887|protocadherin beta 16	AK036829|Pcdhb16|93887|protocadherin beta 16	BC115720|Pcdhb16|93887|protocadherin beta 16	BC116625|Pcdhb16|93887|protocadherin beta 16	AY013777|Pcdhb16|93887|protocadherin beta 16
mm9_v1_chr9_+_123060076_123060088	0.149955	MSX1,2.p2	U08595|Clec3b|21922|C-type lectin domain family 3, member b	X79199|Clec3b|21922|C-type lectin domain family 3, member b
mm9_v1_chr3_+_93272675_93272675	0.147893	MSX1,2.p2	AK017244|Tchhl1|71325|trichohyalin-like 1	NM_027762|Tchhl1|71325|trichohyalin-like 1
mm9_v1_chr8_-_5105158_5105231	0.146866	MSX1,2.p2	D87059|Slc10a2|20494|solute carrier family 10, member 2	BC120703|Slc10a2|20494|solute carrier family 10, member 2	BC125290|Slc10a2|20494|solute carrier family 10, member 2	AB002693|Slc10a2|20494|solute carrier family 10, member 2	AY529655|Slc10a2|20494|solute carrier family 10, member 2	AY529656|Slc10a2|20494|solute carrier family 10, member 2	NM_011388|Slc10a2|20494|solute carrier family 10, member 2
mm9_v1_chr5_-_17341713_17341713	0.142059	MSX1,2.p2	NM_001159555|Cd36|12491|CD36 antigen	NM_007643|Cd36|12491|CD36 antigen
mm9_v1_chr10_+_127335573_127335617	0.141242	MSX1,2.p2	AK037184|Sdr9c7|70061|4short chain dehydrogenase/reductase family 9C, member 7	BC064820|Sdr9c7|70061|4short chain dehydrogenase/reductase family 9C, member 7	NM_027301|Sdr9c7|70061|4short chain dehydrogenase/reductase family 9C, member 7	AY044433|Sdr9c7|70061|4short chain dehydrogenase/reductase family 9C, member 7
mm9_v1_chr3_-_90499611_90499616	0.137853	MSX1,2.p2	AK143826|S100a9|20202|S100 calcium binding protein A9 (calgranulin B)	M83219|S100a9|20202|S100 calcium binding protein A9 (calgranulin B)	NM_009114|S100a9|20202|S100 calcium binding protein A9 (calgranulin B)
mm9_v1_chr4_+_48197852_48197907	0.137644	MSX1,2.p2	AK018158|Stx17|67727|syntaxin 17
mm9_v1_chr4_+_139209452_139209483	0.134603	MSX1,2.p2	AF337041|Tas1r2|83770|taste receptor, type 1, member 2	NM_031873|Tas1r2|83770|taste receptor, type 1, member 2	BC137740|Tas1r2|83770|taste receptor, type 1, member 2	BC144879|Tas1r2|83770|taste receptor, type 1, member 2	AY032623|Tas1r2|83770|taste receptor, type 1, member 2
mm9_v1_chr15_+_10288309_10288333	0.132681	MSX1,2.p2	BC141248|Agxt2|268782|alanine-glyoxylate aminotransferase 2	BC145576|Agxt2|268782|alanine-glyoxylate aminotransferase 2	AK149538|Agxt2|268782|alanine-glyoxylate aminotransferase 2	NM_001031851|Agxt2|268782|alanine-glyoxylate aminotransferase 2
mm9_v1_chr14_+_120830603_120830641	0.12881	MSX1,2.p2	AK003316|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr4_-_151510433_151510433	0.12809	MSX1,2.p2	AF540942|Espn|56226|espin	AF540943|Espn|56226|espin	AF540944|Espn|56226|espin	AF540945|Espn|56226|espin	NM_207688|Espn|56226|espin	NM_207689|Espn|56226|espin	NM_207690|Espn|56226|espin	NM_207691|Espn|56226|espin
mm9_v1_chr19_+_8876985_8877044	0.123366	MSX1,2.p2	AK142256|Zbtb3|75291|zinc finger and BTB domain containing 3	NM_133759|Zbtb3|75291|zinc finger and BTB domain containing 3	AK049258|Zbtb3|75291|zinc finger and BTB domain containing 3	BC119186|Zbtb3|75291|zinc finger and BTB domain containing 3	BC119188|Zbtb3|75291|zinc finger and BTB domain containing 3	NM_001098237|Zbtb3|75291|zinc finger and BTB domain containing 3	BC012410|Zbtb3|75291|zinc finger and BTB domain containing 3
mm9_v1_chr2_-_132641694_132641790	0.122487	MSX1,2.p2	BC027565|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	BC052648|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK164396|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK017672|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK165976|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK167222|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK129300|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK028755|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	NM_175113|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK014359|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)
mm9_v1_chr11_+_16808929_16808957	0.120286	MSX1,2.p2	Z12608|Egfr|13649|epidermal growth factor receptor
mm9_v1_chr6_-_55631039_55631067	0.12016	MSX1,2.p2	AK144303|Neurod6|11922|neurogenic differentiation 6	BC087831|Neurod6|11922|neurogenic differentiation 6	U29086|Neurod6|11922|neurogenic differentiation 6
mm9_v1_chr7_+_21947203_21947203	0.119264	MSX1,2.p2	NM_001166707|Vmn1r123|384695|vomeronasal 1 receptor 123
mm9_v1_chr4_-_129301106_129301154	0.118683	MSX1,2.p2	AK003287|Ccdc28b|66264|coiled coil domain containing 28B	AK028262|Ccdc28b|66264|coiled coil domain containing 28B	BC028873|Ccdc28b|66264|coiled coil domain containing 28B	NM_025455|Ccdc28b|66264|coiled coil domain containing 28B	AK158016|Ccdc28b|66264|coiled coil domain containing 28B
mm9_v1_chr6_-_55631085_55631098	0.115729	MSX1,2.p2	AK144377|Neurod6|11922|neurogenic differentiation 6
mm9_v1_chr10_+_32803288_32803366	0.112735	MSX1,2.p2	NM_029726|Trdn|76757|triadin	AK009816|Trdn|76757|triadin	AF223415|Trdn|76757|triadin	AF223416|Trdn|76757|triadin	BC034343|Trdn|76757|triadin	AF223417|Trdn|76757|triadin
mm9_v1_chr16_+_22951183_22951214	0.100439	MSX1,2.p2	AY135662|Hrg|94175|histidine-rich glycoprotein	AB055897|Hrg|94175|histidine-rich glycoprotein	BC011168|Hrg|94175|histidine-rich glycoprotein	AF194028|Hrg|94175|histidine-rich glycoprotein
mm9_v1_chr2_-_164063997_164064076	0.0943478	MSX1,2.p2	AK090151|Svs2|53878|seminal vesicle secretory protein 2	AK144524|Svs2|53878|seminal vesicle secretory protein 2	AK165727|Svs2|53878|seminal vesicle secretory protein 2	AK136679|Svs2|53878|seminal vesicle secretory protein 2	AK035204|Svs2|53878|seminal vesicle secretory protein 2	AK040724|Svs2|53878|seminal vesicle secretory protein 2	AK090302|Svs2|53878|seminal vesicle secretory protein 2	AK144285|Svs2|53878|seminal vesicle secretory protein 2	AK144389|Svs2|53878|seminal vesicle secretory protein 2	AK144429|Svs2|53878|seminal vesicle secretory protein 2	AK165704|Svs2|53878|seminal vesicle secretory protein 2	AK165713|Svs2|53878|seminal vesicle secretory protein 2	AK165753|Svs2|53878|seminal vesicle secretory protein 2	AK165825|Svs2|53878|seminal vesicle secretory protein 2	BC107275|Svs2|53878|seminal vesicle secretory protein 2	BC107276|Svs2|53878|seminal vesicle secretory protein 2	NM_017390|Svs2|53878|seminal vesicle secretory protein 2
mm9_v1_chr9_+_53619341_53619344	0.0908795	MSX1,2.p2	NM_028060|Slc35f2|72022|solute carrier family 35, member F2	BC055843|Slc35f2|72022|solute carrier family 35, member F2
mm9_v1_chr3_-_32981940_32981960	0.0849795	MSX1,2.p2	AB032591|Pex5l|58869|peroxisomal biogenesis factor 5-like	AK039764|Pex5l|58869|peroxisomal biogenesis factor 5-like	NM_021483|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr9_+_69855789_69855998	0.0810776	MSX1,2.p2	AF071429|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK161900|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2
mm9_v1_chr18_+_37925619_37925770	0.0808141	MSX1,2.p2	BC054528|Pcdhga12|93724|protocadherin gamma subfamily A, 12	U88550|Pcdhga12|93724|protocadherin gamma subfamily A, 12	AY013795|Pcdhga12|93724|protocadherin gamma subfamily A, 12
mm9_v1_chr11_-_30371807_30371828	0.0787736	MSX1,2.p2	BC049719|4930505A04Rik|75087|RIKEN cDNA 4930505A04 gene	AK015698|4930505A04Rik|75087|RIKEN cDNA 4930505A04 gene	NM_001100394|4930505A04Rik|75087|RIKEN cDNA 4930505A04 gene
mm9_v1_chr11_-_119960005_119960044	0.0781908	MSX1,2.p2	AK154660|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	AK019105|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	BC137580|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	BC144724|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	NM_183137|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene
mm9_v1_chr19_-_59420234_59420350	0.0779256	MSX1,2.p2	AK145020|Pdzd8|107368|PDZ domain containing 8	NM_001033222|Pdzd8|107368|PDZ domain containing 8
mm9_v1_chr2_-_10052196_10052339	0.0700428	MSX1,2.p2	AK133782|Itih2|16425|inter-alpha trypsin inhibitor, heavy chain 2	BC034341|Itih2|16425|inter-alpha trypsin inhibitor, heavy chain 2	X70392|Itih2|16425|inter-alpha trypsin inhibitor, heavy chain 2	NM_010582|Itih2|16425|inter-alpha trypsin inhibitor, heavy chain 2
mm9_v1_chr5_-_69933835_69933870	0.0628905	MSX1,2.p2	AK009405|Yipf7|75581|Yip1 domain family, member 7	BC089576|Yipf7|75581|Yip1 domain family, member 7	NM_023784|Yipf7|75581|Yip1 domain family, member 7
mm9_v1_chr2_+_119000244_119000254	0.062282	MSX1,2.p2	AK028753|Gm14137|623781|predicted gene 14137	NM_001039223|Gm14137|623781|predicted gene 14137	BC150984|Gm14137|623781|predicted gene 14137	BC150992|Gm14137|623781|predicted gene 14137
mm9_v1_chr9_-_46128068_46128068	0.0595754	MSX1,2.p2	AK016488|4931429L15Rik|74361|RIKEN cDNA 4931429L15 gene	NM_183104|4931429L15Rik|74361|RIKEN cDNA 4931429L15 gene
mm9_v1_chr11_-_120238194_120238268	0.0582539	MSX1,2.p2	AK198382|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene
mm9_v1_chr2_-_34916915_34916960	0.0559449	MSX1,2.p2	M35525|Hc|15139|hemolytic complement	M35526|Hc|15139|hemolytic complement	AK080166|Hc|15139|hemolytic complement	NM_010406|Hc|15139|hemolytic complement
mm9_v1_chr5_+_88314719_88314719	0.0557299	MSX1,2.p2	EF113909|Odam|69592|odontogenic, ameloblast asssociated	NM_027128|Odam|69592|odontogenic, ameloblast asssociated
mm9_v1_chr5_-_147396814_147396814	0.0547881	MSX1,2.p2	AK140298|Gpr12|14738|G-protein coupled receptor 12	NM_001010941|Gpr12|14738|G-protein coupled receptor 12
mm9_v1_chr1_-_170362244_170362272	0.0527492	MSX1,2.p2	BC054376|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK037006|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr10_+_90038471_90038471	0.0518505	MSX1,2.p2	BC098373|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177397|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr16_-_91069378_91069389	0.0515983	MSX1,2.p2	AK035767|4932438H23Rik|74387|RIKEN cDNA 4932438H23 gene	AK043035|4932438H23Rik|74387|RIKEN cDNA 4932438H23 gene	AK016554|4932438H23Rik|74387|RIKEN cDNA 4932438H23 gene	NM_001163695|4932438H23Rik|74387|RIKEN cDNA 4932438H23 gene	NM_028905|4932438H23Rik|74387|RIKEN cDNA 4932438H23 gene
mm9_v1_chr18_+_50115628_50115725	0.0472377	MSX1,2.p2	AK046910|Dmxl1|240283|Dmx-like 1
mm9_v1_chr8_-_70498472_70498472	0.0454684	MSX1,2.p2	AB220685|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_177698|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr15_+_18750083_18750083	0.0452988	MSX1,2.p2	AK138606|Cdh10|320873|cadherin 10	NM_009865|Cdh10|320873|cadherin 10
mm9_v1_chr9_+_121643763_121643808	0.0417058	MSX1,2.p2	AK052484|Nktr|18087|natural killer tumor recognition sequence
mm9_v1_chr7_-_115210309_115210309	0.0408926	MSX1,2.p2	NM_020291|Olfr480|56861|olfactory receptor 480
mm9_v1_chr10_-_51310190_51310285	0.0404198	MSX1,2.p2	BC147085|Fam162b|77296|family with sequence similarity 162, member B	BC147086|Fam162b|77296|family with sequence similarity 162, member B	NM_029894|Fam162b|77296|family with sequence similarity 162, member B	AK020485|Fam162b|77296|family with sequence similarity 162, member B
mm9_v1_chr2_+_132641920_132642070	0.0386481	MSX1,2.p2	AK012845|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK019268|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK133858|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	BC046780|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK017607|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	BC052070|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	NM_025676|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)
mm9_v1_chr7_-_140206929_140206929	0.0382976	MSX1,2.p2	NM_001170744|Ctbp2|13017|C-terminal binding protein 2
mm9_v1_chr16_+_22951144_22951164	0.0351965	MSX1,2.p2	NM_053176|Hrg|94175|histidine-rich glycoprotein
mm9_v1_chr1_-_31006599_31006606	0.0334729	MSX1,2.p2	AK148288|Ptp4a1|19243|protein tyrosine phosphatase 4a1	NM_011200|Ptp4a1|19243|protein tyrosine phosphatase 4a1
mm9_v1_chr4_+_73888400_73888400	0.0258704	MSX1,2.p2	BC042424|Kdm4c|76804|lysine (K)-specific demethylase 4C	NM_001172095|Kdm4c|76804|lysine (K)-specific demethylase 4C
mm9_v1_chr13_+_27404495_27404496	0.0147501	MSX1,2.p2	AF015563|Prl6a1|19111|prolactin family 6, subfamily a, member 1	NM_011166|Prl6a1|19111|prolactin family 6, subfamily a, member 1	AF011384|Prl6a1|19111|prolactin family 6, subfamily a, member 1
mm9_v1_chr11_-_6328316_6328333	0.0116175	MSX1,2.p2	
mm9_v1_chr18_-_39572137_39572180	0.0105721	MSX1,2.p2	AK171439|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	AK163857|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr3_+_87973934_87974022	0.00954762	MSX1,2.p2	AK032042|Mef2d|17261|myocyte enhancer factor 2D
mm9_v1_chrX_+_23270202_23270284	0.00478825	MSX1,2.p2	AK049071|Wdr44|72404|WD repeat domain 44	AK088885|Wdr44|72404|WD repeat domain 44	BC068151|Wdr44|72404|WD repeat domain 44	NM_175180|Wdr44|72404|WD repeat domain 44	BC049191|Wdr44|72404|WD repeat domain 44	AK011669|Wdr44|72404|WD repeat domain 44
mm9_v1_chr3_-_89215727_89215795	0.00303044	MSX1,2.p2	BC025817|Flad1|319945|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)	BC046769|Flad1|319945|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)	NM_177041|Flad1|319945|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)	AK161929|Flad1|319945|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)	AK044501|Flad1|319945|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)
mm9_v1_chr19_+_8829988_8830019	0.000106663	MSX1,2.p2	
