mm9_v1_chr14_-_118450875_118451546	15.5581	NANOG.p2	EU554632|Dct|13190|dopachrome tautomerase	AK214181|Dct|13190|dopachrome tautomerase	AK214448|Dct|13190|dopachrome tautomerase	AK217087|Dct|13190|dopachrome tautomerase	AK212164|Dct|13190|dopachrome tautomerase	AK219002|Dct|13190|dopachrome tautomerase	BC082330|Dct|13190|dopachrome tautomerase	AK209892|Dct|13190|dopachrome tautomerase	AK191654|Dct|13190|dopachrome tautomerase	BC067064|Dct|13190|dopachrome tautomerase	X63349|Dct|13190|dopachrome tautomerase	AK033040|Dct|13190|dopachrome tautomerase	NM_010024|Dct|13190|dopachrome tautomerase	AK202452|Dct|13190|dopachrome tautomerase
mm9_v1_chr4_+_80480116_80480211	13.0782	NANOG.p2	AK148332|Tyrp1|22178|tyrosinase-related protein 1	BC076598|Tyrp1|22178|tyrosinase-related protein 1	NM_031202|Tyrp1|22178|tyrosinase-related protein 1	X03687|Tyrp1|22178|tyrosinase-related protein 1	AK148370|Tyrp1|22178|tyrosinase-related protein 1	AK148441|Tyrp1|22178|tyrosinase-related protein 1
mm9_v1_chr14_-_49282546_49282546	11.901	NANOG.p2	BC017609|Otx2|18424|orthodenticle homolog 2 (Drosophila)	NM_144841|Otx2|18424|orthodenticle homolog 2 (Drosophila)
mm9_v1_chr14_-_37911383_37911496	10.2141	NANOG.p2	AF426393|Cdhr1|170677|cadherin-related family member 1	BC042454|Cdhr1|170677|cadherin-related family member 1	AK143151|Cdhr1|170677|cadherin-related family member 1	BC058270|Cdhr1|170677|cadherin-related family member 1	NM_130878|Cdhr1|170677|cadherin-related family member 1
mm9_v1_chr3_+_17695743_17695745	8.58888	NANOG.p2	AK046405|6430547I21Rik|320521|RIKEN cDNA 6430547I21 gene	AK032443|6430547I21Rik|320521|RIKEN cDNA 6430547I21 gene
mm9_v1_chr3_+_107895985_107896200	8.16169	NANOG.p2	BC016272|Gnat2|14686|guanine nucleotide binding protein, alpha transducing 2	NM_008141|Gnat2|14686|guanine nucleotide binding protein, alpha transducing 2	BC131941|Gnat2|14686|guanine nucleotide binding protein, alpha transducing 2	BC131943|Gnat2|14686|guanine nucleotide binding protein, alpha transducing 2	BC085102|Gnat2|14686|guanine nucleotide binding protein, alpha transducing 2	L10666|Gnat2|14686|guanine nucleotide binding protein, alpha transducing 2	AK009388|Gnat2|14686|guanine nucleotide binding protein, alpha transducing 2
mm9_v1_chr9_-_96978102_96978110	6.9506	NANOG.p2	AK087750|Slc25a36|192287|solute carrier family 25, member 36
mm9_v1_chr12_-_11215753_11215777	6.81635	NANOG.p2	AF261105|Msgn1|56184|mesogenin 1	NM_019544|Msgn1|56184|mesogenin 1	BC116996|Msgn1|56184|mesogenin 1
mm9_v1_chr3_-_86352170_86352368	6.77136	NANOG.p2	BC046628|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK053645|Mab21l2|23937|mab-21-like 2 (C. elegans)	NM_011839|Mab21l2|23937|mab-21-like 2 (C. elegans)	BC058730|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK144373|Mab21l2|23937|mab-21-like 2 (C. elegans)
mm9_v1_chr19_+_54003803_54003809	6.7574	NANOG.p2	AK050175|Pdcd4|18569|programmed cell death 4
mm9_v1_chr2_+_119000244_119000254	6.6822	NANOG.p2	AK028753|Gm14137|623781|predicted gene 14137	NM_001039223|Gm14137|623781|predicted gene 14137	BC150984|Gm14137|623781|predicted gene 14137	BC150992|Gm14137|623781|predicted gene 14137
mm9_v1_chr19_-_12840121_12840121	6.65221	NANOG.p2	BC027539|Cntf|12803|ciliary neurotrophic factor	NM_170786|Cntf|12803|ciliary neurotrophic factor
mm9_v1_chr10_+_73284612_73284690	6.58528	NANOG.p2	NM_001142735|Pcdh15|11994|protocadherin 15	NM_001142736|Pcdh15|11994|protocadherin 15	NM_001142737|Pcdh15|11994|protocadherin 15	NM_001142738|Pcdh15|11994|protocadherin 15	NM_001142739|Pcdh15|11994|protocadherin 15	NM_001142740|Pcdh15|11994|protocadherin 15	NM_001142741|Pcdh15|11994|protocadherin 15	NM_001142742|Pcdh15|11994|protocadherin 15	NM_001142743|Pcdh15|11994|protocadherin 15	NM_001142746|Pcdh15|11994|protocadherin 15	NM_001142747|Pcdh15|11994|protocadherin 15	NM_001142748|Pcdh15|11994|protocadherin 15	NM_001142760|Pcdh15|11994|protocadherin 15	NM_023115|Pcdh15|11994|protocadherin 15	AF281899|Pcdh15|11994|protocadherin 15	AY949849|Pcdh15|11994|protocadherin 15	DQ354396|Pcdh15|11994|protocadherin 15	DQ354397|Pcdh15|11994|protocadherin 15	DQ354398|Pcdh15|11994|protocadherin 15	DQ354399|Pcdh15|11994|protocadherin 15	DQ354400|Pcdh15|11994|protocadherin 15	DQ354401|Pcdh15|11994|protocadherin 15	DQ354402|Pcdh15|11994|protocadherin 15	DQ354403|Pcdh15|11994|protocadherin 15	DQ354404|Pcdh15|11994|protocadherin 15	DQ354405|Pcdh15|11994|protocadherin 15	DQ354406|Pcdh15|11994|protocadherin 15	DQ354407|Pcdh15|11994|protocadherin 15	DQ354408|Pcdh15|11994|protocadherin 15	DQ354409|Pcdh15|11994|protocadherin 15	DQ354410|Pcdh15|11994|protocadherin 15	DQ354411|Pcdh15|11994|protocadherin 15	DQ354412|Pcdh15|11994|protocadherin 15	DQ354413|Pcdh15|11994|protocadherin 15	DQ354414|Pcdh15|11994|protocadherin 15	DQ354415|Pcdh15|11994|protocadherin 15	AK139154|Pcdh15|11994|protocadherin 15	DQ354416|Pcdh15|11994|protocadherin 15	DQ354417|Pcdh15|11994|protocadherin 15	DQ354418|Pcdh15|11994|protocadherin 15
mm9_v1_chr3_+_121747377_121747377	6.56645	NANOG.p2	AF000149|Abca4|11304|ATP-binding cassette, sub-family A (ABC1), member 4	BC057853|Abca4|11304|ATP-binding cassette, sub-family A (ABC1), member 4	NM_007378|Abca4|11304|ATP-binding cassette, sub-family A (ABC1), member 4
mm9_v1_chr1_+_6720153_6720223	6.28402	NANOG.p2	AK133743|St18|240690|suppression of tumorigenicity 18	BC118528|St18|240690|suppression of tumorigenicity 18	AK137440|St18|240690|suppression of tumorigenicity 18	AK141513|St18|240690|suppression of tumorigenicity 18
mm9_v1_chr14_+_79915429_79915530	6.23218	NANOG.p2	AK132456|Elf1|13709|E74-like factor 1	U19617|Elf1|13709|E74-like factor 1	AK156098|Elf1|13709|E74-like factor 1	BC037743|Elf1|13709|E74-like factor 1	BC027532|Elf1|13709|E74-like factor 1	BC053914|Elf1|13709|E74-like factor 1
mm9_v1_chr4_-_109959366_109959438	6.17895	NANOG.p2	BC048159|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163399|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_010488|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr1_-_4350323_4350394	6.03129	NANOG.p2	BC038794|Rp1|19888|retinitis pigmentosa 1 (human)	BC120927|Rp1|19888|retinitis pigmentosa 1 (human)	BC120928|Rp1|19888|retinitis pigmentosa 1 (human)	AF155141|Rp1|19888|retinitis pigmentosa 1 (human)	AK044413|Rp1|19888|retinitis pigmentosa 1 (human)	BC096607|Rp1|19888|retinitis pigmentosa 1 (human)	NM_011283|Rp1|19888|retinitis pigmentosa 1 (human)
mm9_v1_chr2_-_62321694_62321709	5.89861	NANOG.p2	BC012975|Gcg|14526|glucagon	AK007911|Gcg|14526|glucagon	AK148544|Gcg|14526|glucagon	AF276754|Gcg|14526|glucagon	NM_008100|Gcg|14526|glucagon
mm9_v1_chr11_-_99184254_99184266	5.68944	NANOG.p2	BC018391|Krt25|70810|keratin 25	NM_133730|Krt25|70810|keratin 25	AK014538|Krt25|70810|keratin 25
mm9_v1_chr17_-_51878720_51878731	5.66048	NANOG.p2	AK081385|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr2_+_129838084_129838109	5.55106	NANOG.p2	L10385|Tgm3|21818|transglutaminase 3, E polypeptide	BC129890|Tgm3|21818|transglutaminase 3, E polypeptide	BC129891|Tgm3|21818|transglutaminase 3, E polypeptide	NM_009374|Tgm3|21818|transglutaminase 3, E polypeptide
mm9_v1_chr3_+_101814059_101814199	5.46455	NANOG.p2	S40532|Nhlh2|18072|nescient helix loop helix 2	AK031747|Nhlh2|18072|nescient helix loop helix 2	NM_178777|Nhlh2|18072|nescient helix loop helix 2	AK053837|Nhlh2|18072|nescient helix loop helix 2	AK053046|Nhlh2|18072|nescient helix loop helix 2	AK082728|Nhlh2|18072|nescient helix loop helix 2	AK084160|Nhlh2|18072|nescient helix loop helix 2	AK084308|Nhlh2|18072|nescient helix loop helix 2	BC058413|Nhlh2|18072|nescient helix loop helix 2
mm9_v1_chr9_+_64658817_64658817	5.3226	NANOG.p2	NM_001162917|Dennd4a|102442|DENN/MADD domain containing 4A
mm9_v1_chr6_-_72382855_72382865	5.25166	NANOG.p2	
mm9_v1_chr9_+_46721685_46721730	5.10894	NANOG.p2	AK038437|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	AK049847|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	AK013669|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	BC054400|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	AK140089|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene
mm9_v1_chr13_-_64599099_64599099	4.86403	NANOG.p2	AK004471|1190003K10Rik|68880|RIKEN cDNA 1190003K10 gene	NM_001195435|1190003K10Rik|68880|RIKEN cDNA 1190003K10 gene
mm9_v1_chr18_-_81183260_81183316	4.85225	NANOG.p2	BC072631|Sall3|20689|sal-like 3 (Drosophila)	NM_178280|Sall3|20689|sal-like 3 (Drosophila)
mm9_v1_chr4_-_109959185_109959241	4.78203	NANOG.p2	D31953|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK014133|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	DQ437511|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr11_+_87032504_87032509	4.74479	NANOG.p2	AK004018|Trim37|68729|tripartite motif-containing 37
mm9_v1_chr11_-_99212407_99212431	4.66085	NANOG.p2	AB013607|Krt27|16675|keratin 27	NM_010666|Krt27|16675|keratin 27	AK077384|Krt27|16675|keratin 27	BC140996|Krt27|16675|keratin 27	BC140997|Krt27|16675|keratin 27
mm9_v1_chr7_-_150085870_150085901	4.48756	NANOG.p2	M69200|Th|21823|tyrosine hydroxylase	NM_009377|Th|21823|tyrosine hydroxylase
mm9_v1_chr1_-_65097587_65097736	4.4786	NANOG.p2	K02584|Cryge|12968|crystallin, gamma E	BC057012|Cryge|12968|crystallin, gamma E	BC078417|Cryge|12968|crystallin, gamma E	AK014301|Cryge|12968|crystallin, gamma E	BC132506|Cryge|12968|crystallin, gamma E	BC132508|Cryge|12968|crystallin, gamma E	NM_007777|Cryge|12968|crystallin, gamma E
mm9_v1_chr6_-_136730254_136730285	4.3573	NANOG.p2	BC099968|Gucy2c|14917|guanylate cyclase 2c	NM_001127318|Gucy2c|14917|guanylate cyclase 2c	NM_145067|Gucy2c|14917|guanylate cyclase 2c	AK136496|Gucy2c|14917|guanylate cyclase 2c
mm9_v1_chr7_+_97535516_97535523	4.33428	NANOG.p2	AB057756|Sytl2|83671|synaptotagmin-like 2
mm9_v1_chr2_+_69058005_69058054	4.27424	NANOG.p2	AK148450|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	Z47787|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	BC111905|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	AK148465|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	NM_021331|G6pc2|14378|glucose-6-phosphatase, catalytic, 2
mm9_v1_chr2_+_153988342_153988366	4.23539	NANOG.p2	AK009835|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	AK010012|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	AK010159|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	NM_025990|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	AK009441|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	AK009629|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	AK009803|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	AK010145|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	AK009329|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	AK009531|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	AK009562|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	AK009580|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	AK009695|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	AK010051|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	AK010158|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	AK010115|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	BC115526|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene	BC115527|2310021H06Rik|67135|RIKEN cDNA 2310021H06 gene
mm9_v1_chr6_+_128995918_128995965	4.20748	NANOG.p2	AK041601|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	NM_153094|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	AK154278|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	BC107177|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	BC107178|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	BC127141|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	BC127142|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	AK170023|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	AY029597|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	DQ237931|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F
mm9_v1_chr6_-_116666759_116666930	4.08187	NANOG.p2	BC116440|Tmem72|319776|transmembrane protein 72	BC116441|Tmem72|319776|transmembrane protein 72	AK085603|Tmem72|319776|transmembrane protein 72	NM_178768|Tmem72|319776|transmembrane protein 72	AK049938|Tmem72|319776|transmembrane protein 72	AK033856|Tmem72|319776|transmembrane protein 72	BC093486|Tmem72|319776|transmembrane protein 72	AK049048|Tmem72|319776|transmembrane protein 72	AK141578|Tmem72|319776|transmembrane protein 72
mm9_v1_chr7_-_16465217_16465303	4.08109	NANOG.p2	BC016502|Crx|12951|cone-rod homeobox containing gene	AK053533|Crx|12951|cone-rod homeobox containing gene	U77615|Crx|12951|cone-rod homeobox containing gene	NM_007770|Crx|12951|cone-rod homeobox containing gene
mm9_v1_chr10_+_39332739_39332739	4.0587	NANOG.p2	AK052190|Traf3ip2|103213|TRAF3 interacting protein 2	NM_134000|Traf3ip2|103213|TRAF3 interacting protein 2
mm9_v1_chr10_+_39332934_39333058	3.96714	NANOG.p2	AK037407|Traf3ip2|103213|TRAF3 interacting protein 2	BC138234|Traf3ip2|103213|TRAF3 interacting protein 2	BC138235|Traf3ip2|103213|TRAF3 interacting protein 2	AK031556|Traf3ip2|103213|TRAF3 interacting protein 2	AK098107|Traf3ip2|103213|TRAF3 interacting protein 2	BC096483|Traf3ip2|103213|TRAF3 interacting protein 2
mm9_v1_chr10_+_126437764_126437859	3.91581	NANOG.p2	NM_009635|Avil|11567|advillin	AF059486|Avil|11567|advillin	AK154851|Avil|11567|advillin	AK155900|Avil|11567|advillin	AK170878|Avil|11567|advillin	AK171324|Avil|11567|advillin	AK171319|Avil|11567|advillin	AF041448|Avil|11567|advillin	BC119222|Avil|11567|advillin	BC120545|Avil|11567|advillin
mm9_v1_chr4_-_109078858_109078861	3.89293	NANOG.p2	
mm9_v1_chr5_-_101001191_101001194	3.78313	NANOG.p2	BC010789|Plac8|231507|placenta-specific 8
mm9_v1_chrX_+_104871850_104871850	3.74837	NANOG.p2	AK084312|Tbx22|245572|T-box 22	NM_145224|Tbx22|245572|T-box 22
mm9_v1_chr7_+_97535490_97535508	3.74127	NANOG.p2	AK051653|Sytl2|83671|synaptotagmin-like 2	NM_001040087|Sytl2|83671|synaptotagmin-like 2	NM_001040088|Sytl2|83671|synaptotagmin-like 2	AK162921|Sytl2|83671|synaptotagmin-like 2	AK027924|Sytl2|83671|synaptotagmin-like 2
mm9_v1_chr5_+_138628733_138628797	3.73753	NANOG.p2	AK011474|Cnpy4|66455|canopy 4 homolog (zebrafish)	AK033219|Cnpy4|66455|canopy 4 homolog (zebrafish)	AK051562|Cnpy4|66455|canopy 4 homolog (zebrafish)	NM_178612|Cnpy4|66455|canopy 4 homolog (zebrafish)	AK012968|Cnpy4|66455|canopy 4 homolog (zebrafish)	BC086647|Cnpy4|66455|canopy 4 homolog (zebrafish)
mm9_v1_chr2_-_58012447_58012596	3.5626	NANOG.p2	AF192525|Cytip|227929|cytohesin 1 interacting protein	AK089364|Cytip|227929|cytohesin 1 interacting protein	AF374273|Cytip|227929|cytohesin 1 interacting protein	AK152784|Cytip|227929|cytohesin 1 interacting protein	AK169575|Cytip|227929|cytohesin 1 interacting protein	BC007144|Cytip|227929|cytohesin 1 interacting protein	AK168343|Cytip|227929|cytohesin 1 interacting protein	AK037842|Cytip|227929|cytohesin 1 interacting protein	AK157859|Cytip|227929|cytohesin 1 interacting protein	AK166254|Cytip|227929|cytohesin 1 interacting protein	AK170544|Cytip|227929|cytohesin 1 interacting protein	AK170796|Cytip|227929|cytohesin 1 interacting protein	AK171467|Cytip|227929|cytohesin 1 interacting protein	AK172380|Cytip|227929|cytohesin 1 interacting protein	NM_139200|Cytip|227929|cytohesin 1 interacting protein	AK170301|Cytip|227929|cytohesin 1 interacting protein	AK172071|Cytip|227929|cytohesin 1 interacting protein	AK030882|Cytip|227929|cytohesin 1 interacting protein
mm9_v1_chr9_-_85637765_85637765	3.55454	NANOG.p2	NM_001081282|Ibtk|108837|inhibitor of Bruton agammaglobulinemia tyrosine kinase
mm9_v1_chr16_-_57754816_57754849	3.54969	NANOG.p2	BC011061|Col8a1|12837|collagen, type VIII, alpha 1	BC058281|Col8a1|12837|collagen, type VIII, alpha 1	AK159542|Col8a1|12837|collagen, type VIII, alpha 1	AK029203|Col8a1|12837|collagen, type VIII, alpha 1	AK018742|Col8a1|12837|collagen, type VIII, alpha 1	AK032048|Col8a1|12837|collagen, type VIII, alpha 1	AK046370|Col8a1|12837|collagen, type VIII, alpha 1	NM_007739|Col8a1|12837|collagen, type VIII, alpha 1
mm9_v1_chr15_+_101303908_101304071	3.53647	NANOG.p2	AK161149|Krt86|16679|keratin 86	NM_010667|Krt86|16679|keratin 86	BC139222|Krt86|16679|keratin 86	X99143|Krt86|16679|keratin 86
mm9_v1_chr9_+_91263809_91263809	3.52805	NANOG.p2	AK046913|Zic4|22774|zinc finger protein of the cerebellum 4	NM_009576|Zic4|22774|zinc finger protein of the cerebellum 4
mm9_v1_chr19_+_7344253_7344253	3.50477	NANOG.p2	NM_054048|Rcor2|104383|REST corepressor 2	X83587|Rcor2|104383|REST corepressor 2
mm9_v1_chr1_+_19198994_19199078	3.41952	NANOG.p2	AK017373|Tcfap2b|21419|transcription factor AP-2 beta	NM_009334|Tcfap2b|21419|transcription factor AP-2 beta	AK005128|Tcfap2b|21419|transcription factor AP-2 beta	AK028906|Tcfap2b|21419|transcription factor AP-2 beta	X78197|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr9_-_109986879_109987026	3.41139	NANOG.p2	AK193613|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm9_v1_chr14_+_27813547_27813547	3.39629	NANOG.p2	NM_010420|Hesx1|15209|homeobox gene expressed in ES cells	U40720|Hesx1|15209|homeobox gene expressed in ES cells
mm9_v1_chr1_+_169298077_169298107	3.39407	NANOG.p2	AK208220|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1
mm9_v1_chr7_-_26506741_26506878	3.16971	NANOG.p2	
mm9_v1_chr12_+_72456427_72456435	3.12802	NANOG.p2	
mm9_v1_chr7_-_86531587_86531645	3.09284	NANOG.p2	BC016268|Rlbp1|19771|retinaldehyde binding protein 1	AK014227|Rlbp1|19771|retinaldehyde binding protein 1
mm9_v1_chr4_+_15211137_15211173	2.94406	NANOG.p2	AK162736|Tmem64|100201|transmembrane protein 64
mm9_v1_chr6_+_143156520_143156614	2.8965	NANOG.p2	AK004338|Etnk1|75320|ethanolamine kinase 1
mm9_v1_chr7_+_29666674_29666675	2.88493	NANOG.p2	AJ289243|Capn12|60594|calpain 12	NM_001110807|Capn12|60594|calpain 12	BC028751|Capn12|60594|calpain 12
mm9_v1_chr7_+_119253816_119253899	2.8266	NANOG.p2	AK015683|Usp47|74996|ubiquitin specific peptidase 47
mm9_v1_chr5_-_101001209_101001243	2.82444	NANOG.p2	AF263458|Plac8|231507|placenta-specific 8	AK007369|Plac8|231507|placenta-specific 8	NM_139198|Plac8|231507|placenta-specific 8	AJ422151|Plac8|231507|placenta-specific 8
mm9_v1_chr5_+_23919268_23919268	2.778	NANOG.p2	BC054460|Accn3|171209|amiloride-sensitive cation channel 3	NM_183000|Accn3|171209|amiloride-sensitive cation channel 3
mm9_v1_chr9_+_92502076_92502169	2.77647	NANOG.p2	
mm9_v1_chrX_-_153853209_153853243	2.77137	NANOG.p2	U49908|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	NM_011077|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	U73910|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	AK158481|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)
mm9_v1_chr2_+_129949020_129949033	2.74782	NANOG.p2	AK037229|Tgm6|241636|transglutaminase 6	AY159126|Tgm6|241636|transglutaminase 6	AY177606|Tgm6|241636|transglutaminase 6	NM_177726|Tgm6|241636|transglutaminase 6	BC112420|Tgm6|241636|transglutaminase 6	BC113796|Tgm6|241636|transglutaminase 6
mm9_v1_chr4_+_109650629_109650657	2.73105	NANOG.p2	NM_172296|Dmrta2|242620|doublesex and mab-3 related transcription factor like family A2	AK080774|Dmrta2|242620|doublesex and mab-3 related transcription factor like family A2	AY145837|Dmrta2|242620|doublesex and mab-3 related transcription factor like family A2
mm9_v1_chr11_+_94871620_94871635	2.73065	NANOG.p2	BC049954|Samd14|217125|sterile alpha motif domain containing 14
mm9_v1_chr4_-_109960078_109960115	2.70675	NANOG.p2	BC052451|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AF041342|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK079088|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001038698|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr5_-_54098762_54098942	2.69213	NANOG.p2	BC020534|Cckar|12425|cholecystokinin A receptor	AK143895|Cckar|12425|cholecystokinin A receptor	AK004730|Cckar|12425|cholecystokinin A receptor	AK146738|Cckar|12425|cholecystokinin A receptor	AK147052|Cckar|12425|cholecystokinin A receptor	NM_009827|Cckar|12425|cholecystokinin A receptor
mm9_v1_chr14_+_124059330_124059403	2.68491	NANOG.p2	AK051773|Itgbl1|223272|integrin, beta-like 1	NM_145467|Itgbl1|223272|integrin, beta-like 1	BC020152|Itgbl1|223272|integrin, beta-like 1	AK029068|Itgbl1|223272|integrin, beta-like 1
mm9_v1_chr12_-_88579550_88579681	2.67012	NANOG.p2	BC125331|4933437F05Rik|71275|RIKEN cDNA 4933437F05 gene	BC125333|4933437F05Rik|71275|RIKEN cDNA 4933437F05 gene	NM_027744|4933437F05Rik|71275|RIKEN cDNA 4933437F05 gene	AK017096|4933437F05Rik|71275|RIKEN cDNA 4933437F05 gene
mm9_v1_chr3_+_89586320_89586446	2.66806	NANOG.p2	AK211403|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr17_+_80706746_80706746	2.64809	NANOG.p2	NM_001145452|Arhgef33|381112|Rho guanine nucleotide exchange factor (GEF) 33
mm9_v1_chr15_-_102196701_102196763	2.61494	NANOG.p2	BC113150|Sp7|170574|Sp7 transcription factor 7	NM_130458|Sp7|170574|Sp7 transcription factor 7	AK032521|Sp7|170574|Sp7 transcription factor 7	AF184902|Sp7|170574|Sp7 transcription factor 7	AK076229|Sp7|170574|Sp7 transcription factor 7
mm9_v1_chr8_-_3625251_3625286	2.50116	NANOG.p2	M21532|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_008790|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chr11_+_95885858_95885868	2.47937	NANOG.p2	AK008308|Gip|14607|gastric inhibitory polypeptide	NM_008119|Gip|14607|gastric inhibitory polypeptide	BC104314|Gip|14607|gastric inhibitory polypeptide	BC104315|Gip|14607|gastric inhibitory polypeptide
mm9_v1_chr1_-_180259089_180259120	2.4733	NANOG.p2	AK049600|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr6_+_30491641_30491643	2.46077	NANOG.p2	NM_001024698|Cpa2|232680|carboxypeptidase A2, pancreatic
mm9_v1_chr10_-_116333934_116333934	2.46049	NANOG.p2	AK144383|Gm239|237558|predicted gene 239	AK144411|Gm239|237558|predicted gene 239	NM_001033333|Gm239|237558|predicted gene 239
mm9_v1_chr1_+_6720087_6720131	2.42148	NANOG.p2	AB097467|St18|240690|suppression of tumorigenicity 18	AJ536155|St18|240690|suppression of tumorigenicity 18	AK032557|St18|240690|suppression of tumorigenicity 18	NM_173868|St18|240690|suppression of tumorigenicity 18
mm9_v1_chr1_-_89291303_89291307	2.39598	NANOG.p2	NM_001110227|Kcnj13|100040591|potassium inwardly-rectifying channel, subfamily J, member 13
mm9_v1_chr1_-_167865030_167865141	2.37273	NANOG.p2	AJ296212|Pou2f1|18986|POU domain, class 2, transcription factor 1	NM_198933|Pou2f1|18986|POU domain, class 2, transcription factor 1	NM_198934|Pou2f1|18986|POU domain, class 2, transcription factor 1	AJ489475|Pou2f1|18986|POU domain, class 2, transcription factor 1	AJ489474|Pou2f1|18986|POU domain, class 2, transcription factor 1	X56230|Pou2f1|18986|POU domain, class 2, transcription factor 1
mm9_v1_chr6_+_115881925_115881944	2.35353	NANOG.p2	AK044333|Rho|212541|rhodopsin	AK044412|Rho|212541|rhodopsin	BC094460|Rho|212541|rhodopsin	BC031766|Rho|212541|rhodopsin	BC013125|Rho|212541|rhodopsin	NM_145383|Rho|212541|rhodopsin
mm9_v1_chr16_+_88829238_88829254	2.33555	NANOG.p2	AK132534|Krtap15|26560|keratin associated protein 15	NM_013713|Krtap15|26560|keratin associated protein 15	BC116219|Krtap15|26560|keratin associated protein 15
mm9_v1_chr5_-_123438517_123438541	2.32044	NANOG.p2	NM_001005866|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr3_-_63654912_63654960	2.31852	NANOG.p2	AY691172|Plch1|269437|phospholipase C, eta 1	AY691173|Plch1|269437|phospholipase C, eta 1	AY691174|Plch1|269437|phospholipase C, eta 1	NM_001177732|Plch1|269437|phospholipase C, eta 1	NM_001177733|Plch1|269437|phospholipase C, eta 1	NM_183191|Plch1|269437|phospholipase C, eta 1	BC055005|Plch1|269437|phospholipase C, eta 1
mm9_v1_chr12_+_87702066_87702202	2.25682	NANOG.p2	AK052256|Esrrb|26380|estrogen related receptor, beta	NM_001159500|Esrrb|26380|estrogen related receptor, beta	BC132595|Esrrb|26380|estrogen related receptor, beta	BC132597|Esrrb|26380|estrogen related receptor, beta
mm9_v1_chr7_-_149865451_149865614	2.22571	NANOG.p2	BC145554|Ins2|16334|insulin II	BC132650|Ins2|16334|insulin II	BC132652|Ins2|16334|insulin II	Z47785|Ins2|16334|insulin II	AY899305|Ins2|16334|insulin II	BC066208|Ins2|16334|insulin II	BC099934|Ins2|16334|insulin II	AK007612|Ins2|16334|insulin II	GQ915612|Ins2|16334|insulin II	NM_001185083|Ins2|16334|insulin II	NM_001185084|Ins2|16334|insulin II	NM_008387|Ins2|16334|insulin II
mm9_v1_chrX_-_35087783_35087783	2.2093	NANOG.p2	NM_001100465|Rhox2h|622301|reproductive homeobox 2H
mm9_v1_chr11_-_33103458_33103587	2.1972	NANOG.p2	AJ223801|Tlx3|27140|T-cell leukemia, homeobox 3	BC141308|Tlx3|27140|T-cell leukemia, homeobox 3	BC145631|Tlx3|27140|T-cell leukemia, homeobox 3	AK141870|Tlx3|27140|T-cell leukemia, homeobox 3	NM_019916|Tlx3|27140|T-cell leukemia, homeobox 3
mm9_v1_chr1_+_106665395_106665416	2.1786	NANOG.p2	AK034475|Cdh20|23836|cadherin 20	NM_011800|Cdh20|23836|cadherin 20	BC119606|Cdh20|23836|cadherin 20	BC119607|Cdh20|23836|cadherin 20
mm9_v1_chr11_+_11014018_11014018	2.17017	NANOG.p2	AK141514|Vwc2|319922|von Willebrand factor C domain containing 2	NM_177033|Vwc2|319922|von Willebrand factor C domain containing 2
mm9_v1_chr1_-_79436564_79436664	2.13205	NANOG.p2	BC048249|Scg2|20254|secretogranin II	BC014717|Scg2|20254|secretogranin II	NM_009129|Scg2|20254|secretogranin II
mm9_v1_chr19_-_29409041_29409159	2.132	NANOG.p2	BC111817|Rln1|19773|relaxin 1	BC148202|Rln1|19773|relaxin 1	Z27088|Rln1|19773|relaxin 1	BC132654|Rln1|19773|relaxin 1	BC132656|Rln1|19773|relaxin 1	NM_011272|Rln1|19773|relaxin 1
mm9_v1_chrX_+_34944974_34944974	2.12702	NANOG.p2	NM_001085348|Rhox2e|100040016|reproductive homeobox 2E
mm9_v1_chr11_-_94154354_94154488	2.12691	NANOG.p2	BC055921|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)
mm9_v1_chr11_-_99427891_99427943	2.12017	NANOG.p2	D86424|Krtap3-1|69473|keratin associated protein 3-1	BC060278|Krtap3-1|69473|keratin associated protein 3-1	NM_023511|Krtap3-1|69473|keratin associated protein 3-1
mm9_v1_chr12_+_39510297_39510297	2.09532	NANOG.p2	AK032224|Etv1|14009|ets variant gene 1	NM_001163154|Etv1|14009|ets variant gene 1
mm9_v1_chr7_-_91763744_91763768	2.0545	NANOG.p2	AK164865|Zfand6|65098|zinc finger, AN1-type domain 6
mm9_v1_chr3_-_154718282_154718370	2.03521	NANOG.p2	AK052882|Tnni3k|435766|TNNI3 interacting kinase	BC139368|Tnni3k|435766|TNNI3 interacting kinase	BC139394|Tnni3k|435766|TNNI3 interacting kinase	AK084817|Tnni3k|435766|TNNI3 interacting kinase	AY526095|Tnni3k|435766|TNNI3 interacting kinase	AY526096|Tnni3k|435766|TNNI3 interacting kinase	NM_177066|Tnni3k|435766|TNNI3 interacting kinase
mm9_v1_chr15_-_101723333_101723350	2.02475	NANOG.p2	AK009075|Krt76|77055|keratin 76	AK036802|Krt76|77055|keratin 76	AK137676|Krt76|77055|keratin 76	NM_001033177|Krt76|77055|keratin 76
mm9_v1_chr10_-_20880559_20880789	2.01927	NANOG.p2	X02774|Myb|17863|myeloblastosis oncogene	AK132250|Myb|17863|myeloblastosis oncogene	AK137965|Myb|17863|myeloblastosis oncogene	BC011513|Myb|17863|myeloblastosis oncogene	AK088079|Myb|17863|myeloblastosis oncogene	AK088598|Myb|17863|myeloblastosis oncogene	M12848|Myb|17863|myeloblastosis oncogene	NM_001198914|Myb|17863|myeloblastosis oncogene	NM_010848|Myb|17863|myeloblastosis oncogene
mm9_v1_chr11_-_102807774_102807774	2.00658	NANOG.p2	AF095155|C1ql1|23829|complement component 1, q subcomponent-like 1	BC118980|C1ql1|23829|complement component 1, q subcomponent-like 1	NM_011795|C1ql1|23829|complement component 1, q subcomponent-like 1
mm9_v1_chr9_+_69855789_69855998	1.99588	NANOG.p2	AF071429|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK161900|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2
mm9_v1_chr12_-_105711324_105711536	1.98856	NANOG.p2	AB221548|Gsc|14836|goosecoid homeobox	Y13150|Gsc|14836|goosecoid homeobox	NM_010351|Gsc|14836|goosecoid homeobox	Y13149|Gsc|14836|goosecoid homeobox	X99239|Gsc|14836|goosecoid homeobox
mm9_v1_chr18_+_44264117_44264290	1.95099	NANOG.p2	DQ437332|Spink12|78242|serine peptidase inhibitor, Kazal type 11	AK136616|Spink12|78242|serine peptidase inhibitor, Kazal type 11	NM_030061|Spink12|78242|serine peptidase inhibitor, Kazal type 11	AK020352|Spink12|78242|serine peptidase inhibitor, Kazal type 11	BC145914|Spink12|78242|serine peptidase inhibitor, Kazal type 11	BC145916|Spink12|78242|serine peptidase inhibitor, Kazal type 11
mm9_v1_chr10_+_41250456_41250646	1.93096	NANOG.p2	AK217133|Cd164|53599|CD164 antigen	AK135616|Cd164|53599|CD164 antigen
mm9_v1_chr11_+_101848369_101848394	1.92579	NANOG.p2	AK005669|1700006E09Rik|75437|RIKEN cDNA 1700006E09 gene	NM_029287|1700006E09Rik|75437|RIKEN cDNA 1700006E09 gene	BC116819|1700006E09Rik|75437|RIKEN cDNA 1700006E09 gene	BC116821|1700006E09Rik|75437|RIKEN cDNA 1700006E09 gene	BC100517|1700006E09Rik|75437|RIKEN cDNA 1700006E09 gene
mm9_v1_chrX_+_34784986_34784992	1.9226	NANOG.p2	AK015997|Rhox2a|75199|reproductive homeobox 2A	DQ058639|Rhox2a|75199|reproductive homeobox 2A	NM_001085348|Rhox2e|100040016|reproductive homeobox 2E	NM_029203|Rhox2a|75199|reproductive homeobox 2A	BC132216|Rhox2a|75199|reproductive homeobox 2A	BC132220|Rhox2a|75199|reproductive homeobox 2A	BC145534|Rhox2a|75199|reproductive homeobox 2A
mm9_v1_chr17_+_47047407_47047438	1.92172	NANOG.p2	AK136280|Prph2|19133|peripherin 2	AK044549|Prph2|19133|peripherin 2	NM_008938|Prph2|19133|peripherin 2	X14770|Prph2|19133|peripherin 2	BC085266|Prph2|19133|peripherin 2	BC028958|Prph2|19133|peripherin 2
mm9_v1_chr16_+_37580238_37580255	1.89287	NANOG.p2	NM_013547|Hgd|15233|homogentisate 1, 2-dioxygenase
mm9_v1_chr17_+_49754460_49754540	1.87711	NANOG.p2	AK083760|Kif6|319991|kinesin family member 6	NM_177052|Kif6|319991|kinesin family member 6	AK043404|Kif6|319991|kinesin family member 6
mm9_v1_chr6_+_134874663_134874674	1.87387	NANOG.p2	AK154276|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	AK169586|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B
mm9_v1_chr8_+_13037791_13037837	1.8528	NANOG.p2	AK149449|F10|14058|coagulation factor X	AJ222677|F10|14058|coagulation factor X	AF087644|F10|14058|coagulation factor X	CT010325|F10|14058|coagulation factor X
mm9_v1_chr6_-_98877291_98877410	1.85259	NANOG.p2	
mm9_v1_chrX_-_35057976_35057976	1.84523	NANOG.p2	NM_001114153|Rhox2g|434766|reproductive homeobox 2G
mm9_v1_chr15_-_66644199_66644302	1.84086	NANOG.p2	AJ131777|Sla|20491|src-like adaptor	AK037901|Sla|20491|src-like adaptor	AK137954|Sla|20491|src-like adaptor
mm9_v1_chr1_-_65149923_65149948	1.79129	NANOG.p2	BC056430|Cryga|12964|crystallin, gamma A	NM_007774|Cryga|12964|crystallin, gamma A
mm9_v1_chr11_-_99199267_99199279	1.77607	NANOG.p2	BC116672|Krt26|320864|keratin 26	AK132445|Krt26|320864|keratin 26	AK028682|Krt26|320864|keratin 26	AK162718|Krt26|320864|keratin 26	NM_001033397|Krt26|320864|keratin 26	AK028591|Krt26|320864|keratin 26
mm9_v1_chr15_+_39491073_39491119	1.76879	NANOG.p2	AK054553|Rims2|116838|regulating synaptic membrane exocytosis 2	AK032619|Rims2|116838|regulating synaptic membrane exocytosis 2
mm9_v1_chr18_+_57628139_57628180	1.7652	NANOG.p2	NM_001134697|Ctxn3|629147|cortexin 3	AK042789|Ctxn3|629147|cortexin 3
mm9_v1_chr15_+_80453912_80453951	1.74094	NANOG.p2	AF055465|Grap2|17444|GRB2-related adaptor protein 2	NM_010815|Grap2|17444|GRB2-related adaptor protein 2	AK156939|Grap2|17444|GRB2-related adaptor protein 2	AJ011735|Grap2|17444|GRB2-related adaptor protein 2	AF129477|Grap2|17444|GRB2-related adaptor protein 2	AF236118|Grap2|17444|GRB2-related adaptor protein 2
mm9_v1_chr4_+_64785795_64785812	1.72	NANOG.p2	AF439513|Pappa|18491|pregnancy-associated plasma protein A	AF439514|Pappa|18491|pregnancy-associated plasma protein A
mm9_v1_chr17_-_72102224_72102233	1.71865	NANOG.p2	BC046516|BC027072|225004|cDNA sequence BC027072	NM_146082|BC027072|225004|cDNA sequence BC027072	BC060373|BC027072|225004|cDNA sequence BC027072
mm9_v1_chr12_+_53800302_53800317	1.71796	NANOG.p2	DQ233645|Akap6|238161|A kinase (PRKA) anchor protein 6
mm9_v1_chr18_+_37467108_37467135	1.71477	NANOG.p2	AK036169|Pcdhb4|93875|protocadherin beta 4	AK143280|Pcdhb4|93875|protocadherin beta 4	AK160730|Pcdhb4|93875|protocadherin beta 4	NM_053129|Pcdhb4|93875|protocadherin beta 4	AK029277|Pcdhb4|93875|protocadherin beta 4	BC053098|Pcdhb4|93875|protocadherin beta 4
mm9_v1_chr2_+_163372889_163372923	1.70484	NANOG.p2	AK143948|Hnf4a|15378|hepatic nuclear factor 4, alpha	BC039220|Hnf4a|15378|hepatic nuclear factor 4, alpha	NM_008261|Hnf4a|15378|hepatic nuclear factor 4, alpha
mm9_v1_chr7_+_130267661_130267769	1.68195	NANOG.p2	AK147327|Tnrc6a|233833|trinucleotide repeat containing 6a	AK008599|Tnrc6a|233833|trinucleotide repeat containing 6a	BC026849|Tnrc6a|233833|trinucleotide repeat containing 6a	AK083848|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr11_-_33893151_33893192	1.66791	NANOG.p2	AK048178|Kcnip1|70357|Kv channel-interacting protein 1	AK081845|Kcnip1|70357|Kv channel-interacting protein 1	DQ148494|Kcnip1|70357|Kv channel-interacting protein 1	NM_001190886|Kcnip1|70357|Kv channel-interacting protein 1
mm9_v1_chr5_+_140019846_140019918	1.6593	NANOG.p2	AK082472|Uncx|22255|UNC homeobox	NM_013702|Uncx|22255|UNC homeobox	AF247550|Uncx|22255|UNC homeobox	Z96107|Uncx|22255|UNC homeobox	BC051973|Uncx|22255|UNC homeobox	AJ001116|Uncx|22255|UNC homeobox	S83543|Uncx|22255|UNC homeobox
mm9_v1_chr2_-_165709697_165709718	1.65517	NANOG.p2	AK003657|Zmynd8|228880|zinc finger, MYND-type containing 8
mm9_v1_chr15_-_101404334_101404334	1.64899	NANOG.p2	AK028972|Krt75|109052|keratin 75	AK037233|Krt75|109052|keratin 75	AK076367|Krt75|109052|keratin 75	BC137935|Krt75|109052|keratin 75	BC137936|Krt75|109052|keratin 75	NM_133357|Krt75|109052|keratin 75
mm9_v1_chr5_+_27588462_27588514	1.64157	NANOG.p2	NM_001136060|Dpp6|13483|dipeptidylpeptidase 6	AK031903|Dpp6|13483|dipeptidylpeptidase 6
mm9_v1_chr10_-_106922986_106923189	1.63891	NANOG.p2	X56182|Myf5|17877|myogenic factor 5	BC132144|Myf5|17877|myogenic factor 5	AK044894|Myf5|17877|myogenic factor 5	AK083402|Myf5|17877|myogenic factor 5	NM_008656|Myf5|17877|myogenic factor 5
mm9_v1_chr6_+_54251485_54251608	1.63501	NANOG.p2	
mm9_v1_chr15_+_8918001_8918118	1.63413	NANOG.p2	AK048152|Ranbp3l|223332|RAN binding protein 3-like	AK132406|Ranbp3l|223332|RAN binding protein 3-like	BC058706|Ranbp3l|223332|RAN binding protein 3-like	NM_198024|Ranbp3l|223332|RAN binding protein 3-like
mm9_v1_chr19_-_39723518_39723548	1.61334	NANOG.p2	BC092260|Cyp2c67|545288|cytochrome P450, family 2, subfamily c, polypeptide 67	BC106142|Cyp2c67|545288|cytochrome P450, family 2, subfamily c, polypeptide 67	NM_001024719|Cyp2c67|545288|cytochrome P450, family 2, subfamily c, polypeptide 67	AK149389|Cyp2c67|545288|cytochrome P450, family 2, subfamily c, polypeptide 67
mm9_v1_chr4_-_126540249_126540348	1.60977	NANOG.p2	AK018207|Zmym4|67785|zinc finger, MYM-type 4
mm9_v1_chr7_+_104840013_104840128	1.60062	NANOG.p2	AK021117|Rsf1|233532|remodeling and spacing factor 1
mm9_v1_chr2_-_127346987_127347085	1.59915	NANOG.p2	AF274050|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	DQ148499|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF300870|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC057329|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC026980|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC047139|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AK165711|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF184624|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr10_+_128143313_128143342	1.57958	NANOG.p2	AK012808|Pmel|20431|premelanosome protein	AK131956|Pmel|20431|premelanosome protein	NM_021882|Pmel|20431|premelanosome protein	BC075667|Pmel|20431|premelanosome protein	BC082555|Pmel|20431|premelanosome protein	U14133|Pmel|20431|premelanosome protein
mm9_v1_chr1_-_175157322_175157359	1.57287	NANOG.p2	BC125457|Fcer1a|14125|Fc receptor, IgE, high affinity I, alpha polypeptide	BC125455|Fcer1a|14125|Fc receptor, IgE, high affinity I, alpha polypeptide	BC145138|Fcer1a|14125|Fc receptor, IgE, high affinity I, alpha polypeptide	J05018|Fcer1a|14125|Fc receptor, IgE, high affinity I, alpha polypeptide	NM_010184|Fcer1a|14125|Fc receptor, IgE, high affinity I, alpha polypeptide
mm9_v1_chr1_-_173165051_173165079	1.57239	NANOG.p2	
mm9_v1_chr4_+_133109291_133109339	1.56568	NANOG.p2	AK004930|Nr0b2|23957|nuclear receptor subfamily 0, group B, member 2	BC019540|Nr0b2|23957|nuclear receptor subfamily 0, group B, member 2	NM_011850|Nr0b2|23957|nuclear receptor subfamily 0, group B, member 2	AY360323|Nr0b2|23957|nuclear receptor subfamily 0, group B, member 2	AY360324|Nr0b2|23957|nuclear receptor subfamily 0, group B, member 2
mm9_v1_chr7_+_86418127_86418181	1.56077	NANOG.p2	AK008690|Abhd2|54608|abhydrolase domain containing 2	AK053460|Abhd2|54608|abhydrolase domain containing 2	AK139526|Abhd2|54608|abhydrolase domain containing 2	NM_018811|Abhd2|54608|abhydrolase domain containing 2	AF546701|Abhd2|54608|abhydrolase domain containing 2	BC089477|Abhd2|54608|abhydrolase domain containing 2	AF201730|Abhd2|54608|abhydrolase domain containing 2	BC027098|Abhd2|54608|abhydrolase domain containing 2
mm9_v1_chr11_+_94871643_94871672	1.56045	NANOG.p2	AK044765|Samd14|217125|sterile alpha motif domain containing 14	BC034054|Samd14|217125|sterile alpha motif domain containing 14
mm9_v1_chr9_+_75623899_75624064	1.54899	NANOG.p2	L41145|Bmp5|12160|bone morphogenetic protein 5	BC100751|Bmp5|12160|bone morphogenetic protein 5	BC100752|Bmp5|12160|bone morphogenetic protein 5	BC100753|Bmp5|12160|bone morphogenetic protein 5	BC100754|Bmp5|12160|bone morphogenetic protein 5	AK160412|Bmp5|12160|bone morphogenetic protein 5
mm9_v1_chr1_+_109258889_109258923	1.52852	NANOG.p2	AK009003|Serpinb11|66957|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	AK009855|Serpinb11|66957|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	NM_025867|Serpinb11|66957|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	BC010313|Serpinb11|66957|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11
mm9_v1_chr4_-_129167980_129168013	1.51806	NANOG.p2	AF201734|Tssk3|58864|testis-specific serine kinase 3	AF298901|Tssk3|58864|testis-specific serine kinase 3	AK005983|Tssk3|58864|testis-specific serine kinase 3	BC048470|Tssk3|58864|testis-specific serine kinase 3	AK019840|Tssk3|58864|testis-specific serine kinase 3	NM_080442|Tssk3|58864|testis-specific serine kinase 3
mm9_v1_chr2_-_27118325_27118417	1.51142	NANOG.p2	AK012893|Vav2|22325|vav 2 oncogene	BC025845|Vav2|22325|vav 2 oncogene
mm9_v1_chr4_+_150302107_150302108	1.50743	NANOG.p2	NM_001077509|Tnfrsf9|21942|tumor necrosis factor receptor superfamily, member 9	AK154625|Tnfrsf9|21942|tumor necrosis factor receptor superfamily, member 9
mm9_v1_chr5_+_19413335_19413335	1.49619	NANOG.p2	AK147530|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_001170745|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_015823|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chr19_-_8040489_8040530	1.49336	NANOG.p2	AB056443|AB056442|171405|cDNA sequence AB056442	AB056442|AB056442|171405|cDNA sequence AB056442	NM_134256|AB056442|171405|cDNA sequence AB056442
mm9_v1_chr5_-_138628389_138628461	1.47589	NANOG.p2	AK207383|Taf6|21343|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC058583|Taf6|21343|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_009315|Taf6|21343|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK154867|Taf6|21343|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr2_-_167124096_167124195	1.46474	NANOG.p2	
mm9_v1_chr7_-_19895354_19895395	1.46355	NANOG.p2	NM_008036|Fosb|14282|FBJ osteosarcoma oncogene B
mm9_v1_chr1_+_174486066_174486068	1.45942	NANOG.p2	AK037228|Vsig8|240916|V-set and immunoglobulin domain containing 8	NM_177723|Vsig8|240916|V-set and immunoglobulin domain containing 8
mm9_v1_chr8_-_3625510_3625544	1.4582	NANOG.p2	BC014694|Pcp2|18545|Purkinje cell protein 2 (L7)	BC028982|Pcp2|18545|Purkinje cell protein 2 (L7)	BC024853|Pcp2|18545|Purkinje cell protein 2 (L7)	EU164759|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_001129803|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chr15_+_58731646_58731691	1.45196	NANOG.p2	AK016137|Rnf139|75841|ring finger protein 139
mm9_v1_chr17_-_27304602_27304708	1.43931	NANOG.p2	BC141263|Ip6k3|271424|inositol hexaphosphate kinase 3	AK052857|Ip6k3|271424|inositol hexaphosphate kinase 3	NM_173027|Ip6k3|271424|inositol hexaphosphate kinase 3
mm9_v1_chr5_-_52541869_52541943	1.43002	NANOG.p2	AK208682|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15
mm9_v1_chr9_+_118387306_118387461	1.42472	NANOG.p2	NM_001164789|Eomes|13813|eomesodermin homolog (Xenopus laevis)	NM_010136|Eomes|13813|eomesodermin homolog (Xenopus laevis)	AB031037|Eomes|13813|eomesodermin homolog (Xenopus laevis)	BC094319|Eomes|13813|eomesodermin homolog (Xenopus laevis)
mm9_v1_chr2_-_127347102_127347108	1.4226	NANOG.p2	AF287732|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF287733|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	NM_019789|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr7_+_36234110_36234197	1.42209	NANOG.p2	AF192310|Slc7a9|30962|solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	NM_001199015|Slc7a9|30962|solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	AK142541|Slc7a9|30962|solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	NM_001199016|Slc7a9|30962|solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	AK164714|Slc7a9|30962|solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	BC010746|Slc7a9|30962|solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	AJ249198|Slc7a9|30962|solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	NM_021291|Slc7a9|30962|solute carrier family 7 (cationic amino acid transporter, y+ system), member 9
mm9_v1_chr6_+_13821522_13821573	1.42036	NANOG.p2	AK143417|1110019D14Rik|76311|RIKEN cDNA 1110019D14 gene	AK003812|1110019D14Rik|76311|RIKEN cDNA 1110019D14 gene
mm9_v1_chr8_+_4238862_4238907	1.40902	NANOG.p2	AB005654|Map2k7|26400|mitogen-activated protein kinase kinase 7	AK028772|Map2k7|26400|mitogen-activated protein kinase kinase 7	U74463|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chr11_-_99471502_99471502	1.3911	NANOG.p2	NM_001099346|Gm11937|100041488|predicted gene 11937
mm9_v1_chr1_-_180259336_180259529	1.37294	NANOG.p2	AK049375|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK080656|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr7_-_52965801_52965838	1.37185	NANOG.p2	AK198375|Sphk2|56632|sphingosine kinase 2	AK202851|Sphk2|56632|sphingosine kinase 2
mm9_v1_chr16_+_37580303_37580398	1.37138	NANOG.p2	BC024369|Hgd|15233|homogentisate 1, 2-dioxygenase	BC037628|Hgd|15233|homogentisate 1, 2-dioxygenase	AK050193|Hgd|15233|homogentisate 1, 2-dioxygenase	BC044758|Hgd|15233|homogentisate 1, 2-dioxygenase	AK002584|Hgd|15233|homogentisate 1, 2-dioxygenase
mm9_v1_chr8_+_97197870_97198051	1.36692	NANOG.p2	AK185594|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK195499|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK205549|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK207967|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK212239|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK214075|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK216087|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK218146|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK220110|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK206178|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK190102|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK205025|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK005851|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein
mm9_v1_chr19_+_31943250_31943302	1.36224	NANOG.p2	NM_001081074|A1cf|69865|APOBEC1 complementation factor	AY566862|A1cf|69865|APOBEC1 complementation factor	AY566863|A1cf|69865|APOBEC1 complementation factor	AY566864|A1cf|69865|APOBEC1 complementation factor	AK007970|A1cf|69865|APOBEC1 complementation factor	BC089622|A1cf|69865|APOBEC1 complementation factor
mm9_v1_chr12_+_53800369_53800393	1.36034	NANOG.p2	AK147248|Akap6|238161|A kinase (PRKA) anchor protein 6	AK147371|Akap6|238161|A kinase (PRKA) anchor protein 6	NM_198111|Akap6|238161|A kinase (PRKA) anchor protein 6
mm9_v1_chr5_+_37442095_37442154	1.34642	NANOG.p2	NM_178394|Jakmip1|76071|janus kinase and microtubule interacting protein 1	AK077298|Jakmip1|76071|janus kinase and microtubule interacting protein 1	AK143621|Jakmip1|76071|janus kinase and microtubule interacting protein 1
mm9_v1_chr4_-_136891931_136891995	1.34377	NANOG.p2	AK213611|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	M79301|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L11318|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L78075|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)
mm9_v1_chr10_+_58866370_58866441	1.3433	NANOG.p2	AK008035|Pla2g12b|69836|phospholipase A2, group XIIB	AY358033|Pla2g12b|69836|phospholipase A2, group XIIB	AF339738|Pla2g12b|69836|phospholipase A2, group XIIB	BC021592|Pla2g12b|69836|phospholipase A2, group XIIB	NM_023530|Pla2g12b|69836|phospholipase A2, group XIIB
mm9_v1_chr5_+_29972960_29973052	1.33385	NANOG.p2	AK185151|Ube3c|100763|ubiquitin protein ligase E3C	AK203997|Ube3c|100763|ubiquitin protein ligase E3C	AK049125|Ube3c|100763|ubiquitin protein ligase E3C
mm9_v1_chr9_+_32201569_32201569	1.33222	NANOG.p2	BC020525|Kcnj1|56379|potassium inwardly-rectifying channel, subfamily J, member 1	NM_001168354|Kcnj1|56379|potassium inwardly-rectifying channel, subfamily J, member 1
mm9_v1_chr2_-_79296732_79296799	1.32937	NANOG.p2	BC094611|Neurod1|18012|neurogenic differentiation 1	BC018241|Neurod1|18012|neurogenic differentiation 1	AK018781|Neurod1|18012|neurogenic differentiation 1	AK005073|Neurod1|18012|neurogenic differentiation 1	NM_010894|Neurod1|18012|neurogenic differentiation 1	AK028055|Neurod1|18012|neurogenic differentiation 1
mm9_v1_chr1_-_89283173_89283296	1.32176	NANOG.p2	
mm9_v1_chr2_+_9802878_9802989	1.31868	NANOG.p2	AK015124|4930412O13Rik|381347|RIKEN cDNA 4930412O13 gene	AK029605|4930412O13Rik|381347|RIKEN cDNA 4930412O13 gene
mm9_v1_chr7_-_94641859_94642021	1.31251	NANOG.p2	M26729|Tyr|22173|tyrosinase	AK148341|Tyr|22173|tyrosinase	BC079678|Tyr|22173|tyrosinase	AK148432|Tyr|22173|tyrosinase	D00440|Tyr|22173|tyrosinase	M24560|Tyr|22173|tyrosinase	NM_011661|Tyr|22173|tyrosinase	D00131|Tyr|22173|tyrosinase	AK148172|Tyr|22173|tyrosinase	AK148357|Tyr|22173|tyrosinase	AK014619|Tyr|22173|tyrosinase	AY526904|Tyr|22173|tyrosinase	X12782|Tyr|22173|tyrosinase	M20234|Tyr|22173|tyrosinase
mm9_v1_chr7_+_86418082_86418112	1.3006	NANOG.p2	AK153642|Abhd2|54608|abhydrolase domain containing 2
mm9_v1_chr17_+_35670145_35670217	1.29944	NANOG.p2	AK137759|Psors1c2|57390|psoriasis susceptibility 1 candidate 2 (human)	NM_020576|Psors1c2|57390|psoriasis susceptibility 1 candidate 2 (human)	AF484421|Psors1c2|57390|psoriasis susceptibility 1 candidate 2 (human)	AF159091|Psors1c2|57390|psoriasis susceptibility 1 candidate 2 (human)	BC110561|Psors1c2|57390|psoriasis susceptibility 1 candidate 2 (human)
mm9_v1_chr3_+_89324085_89324085	1.29781	NANOG.p2	AK137738|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	AK170218|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	NM_080466|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm9_v1_chr3_-_20142068_20142081	1.29755	NANOG.p2	BC108409|Cpa3|12873|carboxypeptidase A3, mast cell	J05118|Cpa3|12873|carboxypeptidase A3, mast cell	AK088906|Cpa3|12873|carboxypeptidase A3, mast cell	NM_007753|Cpa3|12873|carboxypeptidase A3, mast cell
mm9_v1_chr5_+_27588579_27588623	1.29181	NANOG.p2	BC048383|Dpp6|13483|dipeptidylpeptidase 6
mm9_v1_chr16_+_20692792_20692908	1.27947	NANOG.p2	
mm9_v1_chr7_+_130267398_130267398	1.26683	NANOG.p2	NM_144925|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr13_+_8202111_8202186	1.26253	NANOG.p2	AK134964|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK051460|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK043249|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK139079|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK139273|Adarb2|94191|adenosine deaminase, RNA-specific, B2	NM_052977|Adarb2|94191|adenosine deaminase, RNA-specific, B2	BC059822|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK046083|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK033916|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK045538|Adarb2|94191|adenosine deaminase, RNA-specific, B2	BC052426|Adarb2|94191|adenosine deaminase, RNA-specific, B2
mm9_v1_chr6_+_57159851_57159851	1.25552	NANOG.p2	NM_053235|Vmn1r13|113862|vomeronasal 1 receptor 13
mm9_v1_chr9_+_106366204_106366267	1.25481	NANOG.p2	
mm9_v1_chr17_+_74898763_74898780	1.24692	NANOG.p2	AK086213|Yipf4|67864|Yip1 domain family, member 4
mm9_v1_chr10_-_116786025_116786098	1.23393	NANOG.p2	AK018657|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chr1_-_129998984_129999039	1.22321	NANOG.p2	BC066035|Zranb3|226409|zinc finger, RAN-binding domain containing 3	NM_027678|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK042139|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK083641|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK084943|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK085488|Zranb3|226409|zinc finger, RAN-binding domain containing 3
mm9_v1_chr5_+_89012600_89012641	1.21744	NANOG.p2	AK045610|Rufy3|52822|RUN and FYVE domain containing 3	AK083242|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr8_+_108214805_108214805	1.21674	NANOG.p2	AK031012|Rltpr|234695|RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing	NM_001033320|Rltpr|234695|RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing
mm9_v1_chr1_+_65973093_65973127	1.20361	NANOG.p2	AK013953|Crygf|12969|crystallin, gamma F	NM_027010|Crygf|12969|crystallin, gamma F	BC056453|Crygf|12969|crystallin, gamma F	M64543|Crygf|12969|crystallin, gamma F
mm9_v1_chr2_+_90620127_90620146	1.1993	NANOG.p2	BC039616|Fnbp4|55935|formin binding protein 4
mm9_v1_chr2_-_164063436_164063437	1.19355	NANOG.p2	AK020661|Svs2|53878|seminal vesicle secretory protein 2
mm9_v1_chr3_-_144512249_144512265	1.19226	NANOG.p2	BC058766|Clca4|229927|chloride channel calcium activated 4	AY008277|Clca4|229927|chloride channel calcium activated 4	NM_139148|Clca4|229927|chloride channel calcium activated 4
mm9_v1_chr6_-_23198140_23198361	1.19097	NANOG.p2	AK014242|Fezf1|73191|Fez family zinc finger 1	BC119565|Fezf1|73191|Fez family zinc finger 1	BC119566|Fezf1|73191|Fez family zinc finger 1	NM_028462|Fezf1|73191|Fez family zinc finger 1	BC049157|Fezf1|73191|Fez family zinc finger 1
mm9_v1_chr14_-_73762324_73762328	1.18195	NANOG.p2	AK010248|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr9_-_37476762_37476806	1.17456	NANOG.p2	AK036933|Panx3|208098|pannexin 3	BC052822|Panx3|208098|pannexin 3	AK028288|Panx3|208098|pannexin 3	AK014690|Panx3|208098|pannexin 3	NM_172454|Panx3|208098|pannexin 3
mm9_v1_chr14_+_117324651_117324783	1.17184	NANOG.p2	AF105268|Gpc6|23888|glypican 6	AK149312|Gpc6|23888|glypican 6	AK132531|Gpc6|23888|glypican 6
mm9_v1_chr16_-_58890041_58890043	1.17152	NANOG.p2	BC127221|Olfr178|258999|olfactory receptor 178	BC111099|Olfr178|258999|olfactory receptor 178	NM_146997|Olfr178|258999|olfactory receptor 178
mm9_v1_chr17_-_35971913_35971974	1.16667	NANOG.p2	AK188748|Tubb5|22154|tubulin, beta 5	AK196888|Tubb5|22154|tubulin, beta 5
mm9_v1_chr6_-_102414660_102414660	1.16595	NANOG.p2	NM_008779|Cntn3|18488|contactin 3
mm9_v1_chr1_-_38014596_38014603	1.16058	NANOG.p2	BC119394|Lyg1|69541|lysozyme G-like 1	BC119396|Lyg1|69541|lysozyme G-like 1	AK009014|Lyg1|69541|lysozyme G-like 1	NM_027111|Lyg1|69541|lysozyme G-like 1
mm9_v1_chr11_-_99236216_99236218	1.15844	NANOG.p2	AB288231|Krt28|70843|keratin 28	AK014642|Krt28|70843|keratin 28	NM_027574|Krt28|70843|keratin 28
mm9_v1_chr1_+_24258538_24258666	1.15778	NANOG.p2	AK017395|Col9a1|12839|collagen, type IX, alpha 1
mm9_v1_chr15_-_8273428_8273486	1.15377	NANOG.p2	AK135347|Nipbl|71175|Nipped-B homolog (Drosophila)
mm9_v1_chr17_+_78907402_78907511	1.15315	NANOG.p2	AK158117|Vit|74199|vitrin	NM_001197028|Vit|74199|vitrin	NM_028813|Vit|74199|vitrin	BC034120|Vit|74199|vitrin	AF454755|Vit|74199|vitrin	AK013193|Vit|74199|vitrin	AK051606|Vit|74199|vitrin
mm9_v1_chr9_+_35024031_35024058	1.15262	NANOG.p2	AK219602|Srpr|67398|signal recognition particle receptor ('docking protein')
mm9_v1_chr11_-_30371807_30371828	1.1394	NANOG.p2	BC049719|4930505A04Rik|75087|RIKEN cDNA 4930505A04 gene	AK015698|4930505A04Rik|75087|RIKEN cDNA 4930505A04 gene	NM_001100394|4930505A04Rik|75087|RIKEN cDNA 4930505A04 gene
mm9_v1_chr2_+_125860507_125860527	1.13922	NANOG.p2	AK086639|Fgf7|14178|fibroblast growth factor 7	BC052847|Fgf7|14178|fibroblast growth factor 7
mm9_v1_chr3_+_93272675_93272675	1.13906	NANOG.p2	AK017244|Tchhl1|71325|trichohyalin-like 1	NM_027762|Tchhl1|71325|trichohyalin-like 1
mm9_v1_chr9_-_53012444_53012529	1.13206	NANOG.p2	AK166787|Ddx10|77591|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
mm9_v1_chr6_+_15135505_15135508	1.12838	NANOG.p2	BC062926|Foxp2|114142|forkhead box P2	NM_212435|Foxp2|114142|forkhead box P2	BC058960|Foxp2|114142|forkhead box P2
mm9_v1_chrX_+_97710893_97711108	1.12263	NANOG.p2	AK218313|Igbp1|18518|immunoglobulin (CD79A) binding protein 1	AK210875|Igbp1|18518|immunoglobulin (CD79A) binding protein 1
mm9_v1_chr18_+_61847568_61847591	1.11022	NANOG.p2	AK003506|Il17b|56069|interleukin 17B	AF184970|Il17b|56069|interleukin 17B	AF218726|Il17b|56069|interleukin 17B	BC002271|Il17b|56069|interleukin 17B	NM_019508|Il17b|56069|interleukin 17B	AF250308|Il17b|56069|interleukin 17B
mm9_v1_chr19_-_11735008_11735048	1.10146	NANOG.p2	BC099498|Plac1l|225922|placenta-specific 1-like	AK143411|Plac1l|225922|placenta-specific 1-like	NM_001037634|Plac1l|225922|placenta-specific 1-like
mm9_v1_chr13_-_93258004_93258035	1.09696	NANOG.p2	AK134948|Zfyve16|218441|zinc finger, FYVE domain containing 16
mm9_v1_chr10_+_127335573_127335617	1.09425	NANOG.p2	AK037184|Sdr9c7|70061|4short chain dehydrogenase/reductase family 9C, member 7	BC064820|Sdr9c7|70061|4short chain dehydrogenase/reductase family 9C, member 7	NM_027301|Sdr9c7|70061|4short chain dehydrogenase/reductase family 9C, member 7	AY044433|Sdr9c7|70061|4short chain dehydrogenase/reductase family 9C, member 7
mm9_v1_chr11_+_19879583_19879598	1.0842	NANOG.p2	
mm9_v1_chr15_+_44259636_44259698	1.06946	NANOG.p2	AK007877|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AF173297|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	BC048361|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	NM_175009|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AK032957|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AK162511|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AK160628|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AK016562|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AK087816|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)
mm9_v1_chr11_-_97372344_97372370	1.06407	NANOG.p2	AK051643|Srcin1|56013|SRC kinase signaling inhibitor 1
mm9_v1_chr2_+_59192308_59192366	1.06358	NANOG.p2	AK021168|Pkp4|227937|plakophilin 4
mm9_v1_chr5_-_67490295_67490393	1.06036	NANOG.p2	AK052579|Phox2b|18935|paired-like homeobox 2b	BC079610|Phox2b|18935|paired-like homeobox 2b	NM_008888|Phox2b|18935|paired-like homeobox 2b	Y14493|Phox2b|18935|paired-like homeobox 2b
mm9_v1_chr17_+_29629987_29630031	1.05842	NANOG.p2	AK154127|Pim1|18712|proviral integration site 1
mm9_v1_chr2_+_26775279_26775409	1.05655	NANOG.p2	AK215042|Surf2|20931|surfeit gene 2
mm9_v1_chr1_+_89652645_89652774	1.05644	NANOG.p2	AK030983|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	NM_029846|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK145673|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK155358|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK163246|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK170073|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	BC049122|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK048873|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK005181|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087879|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087880|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087881|Atg16l1|77040|autophagy-related 16-like 1 (yeast)
mm9_v1_chr10_+_19890580_19890589	1.05243	NANOG.p2	AK138516|1700026H06Rik|70376|RIKEN cDNA 1700026H06 gene	AK138667|1700026H06Rik|70376|RIKEN cDNA 1700026H06 gene
mm9_v1_chr3_+_5090275_5090294	1.051	NANOG.p2	
mm9_v1_chr12_+_34613289_34613297	1.05025	NANOG.p2	AF517121|Ferd3l|114712|Fer3-like (Drosophila)	NM_033522|Ferd3l|114712|Fer3-like (Drosophila)	BC111576|Ferd3l|114712|Fer3-like (Drosophila)
mm9_v1_chr5_-_63157309_63157425	1.04718	NANOG.p2	AK037027|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK039153|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK041540|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	NM_178407|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm9_v1_chr6_+_126965559_126965657	1.0426	NANOG.p2	NM_010204|Fgf6|14177|fibroblast growth factor 6	AK086530|Fgf6|14177|fibroblast growth factor 6	M92416|Fgf6|14177|fibroblast growth factor 6
mm9_v1_chr16_-_56690646_56690662	1.04144	NANOG.p2	
mm9_v1_chr17_+_27693821_27693843	1.03661	NANOG.p2	J04179|Hmga1|15361|high mobility group AT-hook 1
mm9_v1_chr13_+_55546643_55546728	1.02781	NANOG.p2	NM_001038018|Grk6|26385|G protein-coupled receptor kinase 6	NM_001112711|Grk6|26385|G protein-coupled receptor kinase 6	NM_011938|Grk6|26385|G protein-coupled receptor kinase 6	BC057206|Grk6|26385|G protein-coupled receptor kinase 6
mm9_v1_chr12_+_91570569_91570694	1.01969	NANOG.p2	AJ006804|Nrxn3|18191|neurexin III
mm9_v1_chr4_+_8617550_8617602	1.01796	NANOG.p2	AK171857|Chd7|320790|chromodomain helicase DNA binding protein 7	AK172025|Chd7|320790|chromodomain helicase DNA binding protein 7
mm9_v1_chr16_-_85550617_85550674	1.01347	NANOG.p2	BC099957|Cyyr1|224405|cysteine and tyrosine-rich protein 1	NM_144853|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK031840|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AY061854|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK171936|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK163137|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK158088|Cyyr1|224405|cysteine and tyrosine-rich protein 1
mm9_v1_chr12_-_58646914_58647013	1.00967	NANOG.p2	X74936|Foxa1|15375|forkhead box A1	U44752|Foxa1|15375|forkhead box A1
mm9_v1_chr9_+_51021793_51021824	1.00186	NANOG.p2	Z54283|Pou2af1|18985|POU domain, class 2, associating factor 1	NM_011136|Pou2af1|18985|POU domain, class 2, associating factor 1	U43788|Pou2af1|18985|POU domain, class 2, associating factor 1	AK088587|Pou2af1|18985|POU domain, class 2, associating factor 1	AK135080|Pou2af1|18985|POU domain, class 2, associating factor 1	BC058611|Pou2af1|18985|POU domain, class 2, associating factor 1
mm9_v1_chr12_-_88605193_88605194	0.999715	NANOG.p2	NM_134044|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator	BC023716|Vipar|104799|VPS33B interacting protein, apical-basolateral polarity regulator
mm9_v1_chrX_+_71518323_71518327	0.999646	NANOG.p2	
mm9_v1_chr3_-_116126932_116126949	0.995911	NANOG.p2	AK043956|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK052560|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK142294|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001080818|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001173553|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)
mm9_v1_chr8_-_90483392_90483493	0.993199	NANOG.p2	AY256893|Zfp423|94187|zinc finger protein 423	AK122365|Zfp423|94187|zinc finger protein 423	NM_033327|Zfp423|94187|zinc finger protein 423
mm9_v1_chr17_+_69788665_69788722	0.991441	NANOG.p2	NM_001145192|A330050F15Rik|320722|RIKEN cDNA A330050F15 gene	AK039494|A330050F15Rik|320722|RIKEN cDNA A330050F15 gene
mm9_v1_chr1_-_52714729_52714742	0.990822	NANOG.p2	BC016598|Mfsd6|98682|major facilitator superfamily domain containing 6
mm9_v1_chr18_-_14002490_14002628	0.987845	NANOG.p2	BC023458|Zfp521|225207|zinc finger protein 521
mm9_v1_chr17_+_35153523_35153582	0.986071	NANOG.p2	AF134319|D17H6S56E-3|27762|DNA segment, Chr 17, human D6S56E 3	NM_138582|D17H6S56E-3|27762|DNA segment, Chr 17, human D6S56E 3	BC137792|D17H6S56E-3|27762|DNA segment, Chr 17, human D6S56E 3	BC144911|D17H6S56E-3|27762|DNA segment, Chr 17, human D6S56E 3
mm9_v1_chr4_+_43519895_43519908	0.985166	NANOG.p2	AB086322|Car9|230099|carbonic anhydrase 9	AJ245857|Car9|230099|carbonic anhydrase 9	EF122497|Car9|230099|carbonic anhydrase 9	AK136579|Car9|230099|carbonic anhydrase 9	AK137719|Car9|230099|carbonic anhydrase 9	NM_139305|Car9|230099|carbonic anhydrase 9	BC120544|Car9|230099|carbonic anhydrase 9	BC120546|Car9|230099|carbonic anhydrase 9	BC057148|Car9|230099|carbonic anhydrase 9
mm9_v1_chr11_-_102440432_102440463	0.98174	NANOG.p2	AK144330|Gm11627|100040792|predicted gene 11627
mm9_v1_chr19_+_39585311_39585360	0.979549	NANOG.p2	BC139290|Cyp2c39|13098|cytochrome P450, family 2, subfamily c, polypeptide 39	BC139291|Cyp2c39|13098|cytochrome P450, family 2, subfamily c, polypeptide 39	NM_010003|Cyp2c39|13098|cytochrome P450, family 2, subfamily c, polypeptide 39	BC057911|Cyp2c39|13098|cytochrome P450, family 2, subfamily c, polypeptide 39	AF047726|Cyp2c39|13098|cytochrome P450, family 2, subfamily c, polypeptide 39
mm9_v1_chr9_+_77899730_77899780	0.978415	NANOG.p2	D88612|Gcm1|14531|glial cells missing homolog 1 (Drosophila)	U59876|Gcm1|14531|glial cells missing homolog 1 (Drosophila)	BC066866|Gcm1|14531|glial cells missing homolog 1 (Drosophila)	NM_008103|Gcm1|14531|glial cells missing homolog 1 (Drosophila)	AK142574|Gcm1|14531|glial cells missing homolog 1 (Drosophila)
mm9_v1_chr10_+_74636715_74636718	0.9762	NANOG.p2	AK017213|Bcr|110279|breakpoint cluster region
mm9_v1_chr5_+_31216069_31216111	0.975348	NANOG.p2	AK052368|Emilin1|100952|elastin microfibril interfacer 1	AK088995|Emilin1|100952|elastin microfibril interfacer 1	AK020015|Emilin1|100952|elastin microfibril interfacer 1
mm9_v1_chr5_+_88885015_88885035	0.974277	NANOG.p2	AK017250|Ambn|11698|ameloblastin	BC087927|Ambn|11698|ameloblastin	NM_009664|Ambn|11698|ameloblastin	U65021|Ambn|11698|ameloblastin
mm9_v1_chr13_+_55546808_55546869	0.969558	NANOG.p2	AK146119|Grk6|26385|G protein-coupled receptor kinase 6	AF040747|Grk6|26385|G protein-coupled receptor kinase 6	AF040748|Grk6|26385|G protein-coupled receptor kinase 6	AF040749|Grk6|26385|G protein-coupled receptor kinase 6	BC075719|Grk6|26385|G protein-coupled receptor kinase 6	Y15798|Grk6|26385|G protein-coupled receptor kinase 6	Y15799|Grk6|26385|G protein-coupled receptor kinase 6	Y15797|Grk6|26385|G protein-coupled receptor kinase 6	Y15800|Grk6|26385|G protein-coupled receptor kinase 6
mm9_v1_chr1_+_166081951_166082088	0.967014	NANOG.p2	AK137521|F5|14067|coagulation factor V	AK139240|F5|14067|coagulation factor V	AK137537|F5|14067|coagulation factor V	NM_007976|F5|14067|coagulation factor V	U52925|F5|14067|coagulation factor V
mm9_v1_chr12_+_59312790_59312790	0.965785	NANOG.p2	AK046464|Sstr1|20605|somatostatin receptor 1	NM_009216|Sstr1|20605|somatostatin receptor 1
mm9_v1_chrX_+_54465272_54465331	0.952563	NANOG.p2	BC119225|Cd40lg|21947|CD40 ligand	NM_011616|Cd40lg|21947|CD40 ligand	X65453|Cd40lg|21947|CD40 ligand	EU274582|Cd40lg|21947|CD40 ligand
mm9_v1_chr16_-_97985323_97985396	0.950771	NANOG.p2	BC057871|Ripk4|72388|receptor-interacting serine-threonine kinase 4	AK145203|Ripk4|72388|receptor-interacting serine-threonine kinase 4	AF302127|Ripk4|72388|receptor-interacting serine-threonine kinase 4	NM_023663|Ripk4|72388|receptor-interacting serine-threonine kinase 4	AK010133|Ripk4|72388|receptor-interacting serine-threonine kinase 4
mm9_v1_chr9_+_7628229_7628230	0.950491	NANOG.p2	BC152335|Mmp20|30800|matrix metallopeptidase 20 (enamelysin)	BC152336|Mmp20|30800|matrix metallopeptidase 20 (enamelysin)	AF155933|Mmp20|30800|matrix metallopeptidase 20 (enamelysin)	NM_013903|Mmp20|30800|matrix metallopeptidase 20 (enamelysin)
mm9_v1_chr2_-_155771090_155771102	0.943045	NANOG.p2	BC034546|Gdf5|14563|growth differentiation factor 5	NM_008109|Gdf5|14563|growth differentiation factor 5	U08337|Gdf5|14563|growth differentiation factor 5
mm9_v1_chr11_-_99464621_99464621	0.942504	NANOG.p2	NM_001127354|Gm11938|100041412|predicted gene 11938
mm9_v1_chr10_+_101621491_101621538	0.942132	NANOG.p2	NM_001162368|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)	AK015051|4930402I19Rik|73798|RIKEN cDNA 4930402I19 gene
mm9_v1_chr11_-_87639611_87639615	0.94132	NANOG.p2	BC016212|Lpo|76113|lactoperoxidase	NM_080420|Lpo|76113|lactoperoxidase
mm9_v1_chr17_+_9181197_9181252	0.93956	NANOG.p2	NM_025851|1700010I14Rik|66931|RIKEN cDNA 1700010I14 gene	AK161278|1700010I14Rik|66931|RIKEN cDNA 1700010I14 gene	AK005830|1700010I14Rik|66931|RIKEN cDNA 1700010I14 gene	BC050753|1700010I14Rik|66931|RIKEN cDNA 1700010I14 gene	AK006307|1700010I14Rik|66931|RIKEN cDNA 1700010I14 gene	AK015220|1700010I14Rik|66931|RIKEN cDNA 1700010I14 gene	BC061078|1700010I14Rik|66931|RIKEN cDNA 1700010I14 gene
mm9_v1_chr10_-_26095736_26095813	0.92926	NANOG.p2	BC082309|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)	AK031398|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)
mm9_v1_chr3_-_88214215_88214225	0.922045	NANOG.p2	BC034333|Pmf1|67037|polyamine-modulated factor 1
mm9_v1_chr8_+_59799779_59799785	0.921175	NANOG.p2	AK035160|Hand2|15111|heart and neural crest derivatives expressed transcript 2	NM_010402|Hand2|15111|heart and neural crest derivatives expressed transcript 2
mm9_v1_chr8_-_3624988_3625048	0.913636	NANOG.p2	AK003002|Pcp2|18545|Purkinje cell protein 2 (L7)	AK160398|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_001129804|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chr19_+_37772297_37772373	0.908607	NANOG.p2	NM_007811|Cyp26a1|13082|cytochrome P450, family 26, subfamily a, polypeptide 1	Y12657|Cyp26a1|13082|cytochrome P450, family 26, subfamily a, polypeptide 1	AF115769|Cyp26a1|13082|cytochrome P450, family 26, subfamily a, polypeptide 1
mm9_v1_chr11_-_99412144_99412178	0.903099	NANOG.p2	BC120760|Krtap3-3|66380|keratin associated protein 3-3	BC120762|Krtap3-3|66380|keratin associated protein 3-3	AK009410|Krtap3-3|66380|keratin associated protein 3-3	AK010142|Krtap3-3|66380|keratin associated protein 3-3	NM_025524|Krtap3-3|66380|keratin associated protein 3-3	AK009052|Krtap3-3|66380|keratin associated protein 3-3
mm9_v1_chr5_+_89012596_89012599	0.895984	NANOG.p2	BC049127|Rufy3|52822|RUN and FYVE domain containing 3	NM_027530|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr17_+_37035062_37035074	0.894898	NANOG.p2	AK033650|Trim31|224762|tripartite motif-containing 31	BC026666|Trim31|224762|tripartite motif-containing 31	NM_146077|Trim31|224762|tripartite motif-containing 31
mm9_v1_chr1_+_59543450_59543567	0.885702	NANOG.p2	
mm9_v1_chr19_-_21028691_21028691	0.885552	NANOG.p2	AF417579|Tmc1|13409|transmembrane channel-like gene family 1	NM_028953|Tmc1|13409|transmembrane channel-like gene family 1
mm9_v1_chr12_-_57714253_57714270	0.884929	NANOG.p2	BC150762|Nkx2-9|18094|NK2 transcription factor related, locus 9 (Drosophila)	Y15741|Nkx2-9|18094|NK2 transcription factor related, locus 9 (Drosophila)	NM_008701|Nkx2-9|18094|NK2 transcription factor related, locus 9 (Drosophila)
mm9_v1_chr3_-_88214230_88214284	0.88103	NANOG.p2	BC037139|Pmf1|67037|polyamine-modulated factor 1	BC049223|Pmf1|67037|polyamine-modulated factor 1	AK011174|Pmf1|67037|polyamine-modulated factor 1	AK012113|Pmf1|67037|polyamine-modulated factor 1	AK168200|Pmf1|67037|polyamine-modulated factor 1	NM_025928|Pmf1|67037|polyamine-modulated factor 1	AK013787|Pmf1|67037|polyamine-modulated factor 1	AF348509|Pmf1|67037|polyamine-modulated factor 1	AF348510|Pmf1|67037|polyamine-modulated factor 1	AK150603|Pmf1|67037|polyamine-modulated factor 1	AK078308|Pmf1|67037|polyamine-modulated factor 1
mm9_v1_chr16_+_33794452_33794574	0.880751	NANOG.p2	BC024321|Muc13|17063|mucin 13, epithelial transmembrane	AK132274|Muc13|17063|mucin 13, epithelial transmembrane
mm9_v1_chr7_+_4289325_4289370	0.873448	NANOG.p2	AK079401|Ncr1|17086|natural cytotoxicity triggering receptor 1	BC115364|Ncr1|17086|natural cytotoxicity triggering receptor 1	NM_010746|Ncr1|17086|natural cytotoxicity triggering receptor 1	AJ223765|Ncr1|17086|natural cytotoxicity triggering receptor 1	BC042788|Ncr1|17086|natural cytotoxicity triggering receptor 1	AK172251|Ncr1|17086|natural cytotoxicity triggering receptor 1
mm9_v1_chr17_-_27865833_27865918	0.873187	NANOG.p2	AB019436|Spdef|30051|SAM pointed domain containing ets transcription factor	AK078863|Spdef|30051|SAM pointed domain containing ets transcription factor	NM_013891|Spdef|30051|SAM pointed domain containing ets transcription factor
mm9_v1_chr6_-_72382995_72383001	0.87133	NANOG.p2	
mm9_v1_chr4_-_91066674_91066674	0.863564	NANOG.p2	BC049125|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	BC058393|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207685|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr12_+_120084801_120084801	0.856958	NANOG.p2	AK053093|Sp8|320145|trans-acting transcription factor 8	NM_177082|Sp8|320145|trans-acting transcription factor 8
mm9_v1_chr6_-_50604391_50604439	0.855029	NANOG.p2	AB040289|Npvf|60531|neuropeptide VF precursor	AF330058|Npvf|60531|neuropeptide VF precursor	NM_021892|Npvf|60531|neuropeptide VF precursor	AK138200|Npvf|60531|neuropeptide VF precursor	BC116905|Npvf|60531|neuropeptide VF precursor	BC116907|Npvf|60531|neuropeptide VF precursor
mm9_v1_chr10_-_13108775_13108775	0.849153	NANOG.p2	AK139466|Phactr2|215789|phosphatase and actin regulator 2	NM_001195066|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr15_+_91991704_91991862	0.843383	NANOG.p2	NM_001159647|Cntn1|12805|contactin 1	BC066864|Cntn1|12805|contactin 1
mm9_v1_chr15_-_5058532_5058532	0.843055	NANOG.p2	NM_001163138|Card6|239319|caspase recruitment domain family, member 6
mm9_v1_chr15_-_100518324_100518351	0.837987	NANOG.p2	BC011218|Cela1|109901|chymotrypsin-like elastase family, member 1	AK007931|Cela1|109901|chymotrypsin-like elastase family, member 1	AK007392|Cela1|109901|chymotrypsin-like elastase family, member 1	NM_033612|Cela1|109901|chymotrypsin-like elastase family, member 1
mm9_v1_chrX_+_97170927_97171053	0.837795	NANOG.p2	AK028502|Eda|13607|ectodysplasin-A	AF016627|Eda|13607|ectodysplasin-A	AF016628|Eda|13607|ectodysplasin-A	AF016629|Eda|13607|ectodysplasin-A	AF016630|Eda|13607|ectodysplasin-A	DQ168876|Eda|13607|ectodysplasin-A	DQ168877|Eda|13607|ectodysplasin-A	DQ168878|Eda|13607|ectodysplasin-A	DQ168879|Eda|13607|ectodysplasin-A	DQ168880|Eda|13607|ectodysplasin-A	DQ168881|Eda|13607|ectodysplasin-A	NM_001177937|Eda|13607|ectodysplasin-A	NM_001177938|Eda|13607|ectodysplasin-A	NM_001177939|Eda|13607|ectodysplasin-A	NM_001177940|Eda|13607|ectodysplasin-A	NM_001177941|Eda|13607|ectodysplasin-A	NM_001177942|Eda|13607|ectodysplasin-A	NM_001177943|Eda|13607|ectodysplasin-A	NM_001177944|Eda|13607|ectodysplasin-A	NM_010099|Eda|13607|ectodysplasin-A	AF016631|Eda|13607|ectodysplasin-A	AJ243657|Eda|13607|ectodysplasin-A	AK040754|Eda|13607|ectodysplasin-A	AF004435|Eda|13607|ectodysplasin-A	AJ243658|Eda|13607|ectodysplasin-A	AK137551|Eda|13607|ectodysplasin-A	BC125387|Eda|13607|ectodysplasin-A	BC144790|Eda|13607|ectodysplasin-A	BC144791|Eda|13607|ectodysplasin-A
mm9_v1_chr5_-_87911282_87911282	0.834385	NANOG.p2	BC048920|Ugt2a2|552899|UDP glucuronosyltransferase 2 family, polypeptide A2	BC058786|Ugt2a2|552899|UDP glucuronosyltransferase 2 family, polypeptide A2	NM_001024148|Ugt2a2|552899|UDP glucuronosyltransferase 2 family, polypeptide A2
mm9_v1_chr17_-_51971946_51971971	0.832783	NANOG.p2	AK088563|Satb1|20230|special AT-rich sequence binding protein 1	AK134040|Satb1|20230|special AT-rich sequence binding protein 1	U05252|Satb1|20230|special AT-rich sequence binding protein 1	AK037740|Satb1|20230|special AT-rich sequence binding protein 1	NM_009122|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr2_+_27020999_27021026	0.827209	NANOG.p2	BC141022|Dbh|13166|dopamine beta hydroxylase	BC171949|Dbh|13166|dopamine beta hydroxylase	AK132245|Dbh|13166|dopamine beta hydroxylase	NM_138942|Dbh|13166|dopamine beta hydroxylase
mm9_v1_chr7_+_111054855_111054855	0.824405	NANOG.p2	BC137766|Olfr65|18365|olfactory receptor 65	NM_013616|Olfr65|18365|olfactory receptor 65
mm9_v1_chr2_+_153956082_153956082	0.820073	NANOG.p2	AK006829|1700058C13Rik|73388|RIKEN cDNA 1700058C13 gene	BC049691|1700058C13Rik|73388|RIKEN cDNA 1700058C13 gene	NM_028528|1700058C13Rik|73388|RIKEN cDNA 1700058C13 gene
mm9_v1_chr15_-_101648565_101648599	0.819421	NANOG.p2	BC120485|Krt2|16681|keratin 2	BC139485|Krt2|16681|keratin 2	X74784|Krt2|16681|keratin 2	AK161078|Krt2|16681|keratin 2	AK132476|Krt2|16681|keratin 2	AK161098|Krt2|16681|keratin 2	NM_010668|Krt2|16681|keratin 2
mm9_v1_chr1_-_55044032_55044295	0.816482	NANOG.p2	AK077993|Sf3b1|81898|splicing factor 3b, subunit 1	AK087700|Sf3b1|81898|splicing factor 3b, subunit 1
mm9_v1_chr1_-_14299936_14300280	0.814582	NANOG.p2	BC066860|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK045320|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK042412|Eya1|14048|eyes absent 1 homolog (Drosophila)	BC060260|Eya1|14048|eyes absent 1 homolog (Drosophila)	NM_010164|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK153788|Eya1|14048|eyes absent 1 homolog (Drosophila)
mm9_v1_chr11_-_69648350_69648356	0.81032	NANOG.p2	AK173159|Nlgn2|216856|neuroligin 2	NM_198862|Nlgn2|216856|neuroligin 2
mm9_v1_chr10_-_25798022_25798082	0.80274	NANOG.p2	AK165025|Tmem200a|77220|transmembrane protein 200A	BC141266|Tmem200a|77220|transmembrane protein 200A	BC141267|Tmem200a|77220|transmembrane protein 200A
mm9_v1_chr15_-_42508294_42508522	0.798674	NANOG.p2	U83509|Angpt1|11600|angiopoietin 1	BC067410|Angpt1|11600|angiopoietin 1	NM_009640|Angpt1|11600|angiopoietin 1	AK172868|Angpt1|11600|angiopoietin 1	AK012027|Angpt1|11600|angiopoietin 1	AK088439|Angpt1|11600|angiopoietin 1
mm9_v1_chr15_+_92427539_92427556	0.794043	NANOG.p2	NM_001164594|Pdzrn4|239618|PDZ domain containing RING finger 4	AK135524|Pdzrn4|239618|PDZ domain containing RING finger 4
mm9_v1_chr7_+_134094045_134094242	0.782969	NANOG.p2	AK034088|Sez6l2|233878|seizure related 6 homolog like 2	AK165738|Sez6l2|233878|seizure related 6 homolog like 2	BC096615|Sez6l2|233878|seizure related 6 homolog like 2	BC011475|Sez6l2|233878|seizure related 6 homolog like 2	NM_144926|Sez6l2|233878|seizure related 6 homolog like 2
mm9_v1_chr4_-_151510433_151510433	0.778423	NANOG.p2	AF540942|Espn|56226|espin	AF540943|Espn|56226|espin	AF540944|Espn|56226|espin	AF540945|Espn|56226|espin	NM_207688|Espn|56226|espin	NM_207689|Espn|56226|espin	NM_207690|Espn|56226|espin	NM_207691|Espn|56226|espin
mm9_v1_chr2_+_61642509_61642690	0.778155	NANOG.p2	BC052737|Tbr1|21375|T-box brain gene 1	NM_009322|Tbr1|21375|T-box brain gene 1	AK158835|Tbr1|21375|T-box brain gene 1	BC058399|Tbr1|21375|T-box brain gene 1	U49251|Tbr1|21375|T-box brain gene 1
mm9_v1_chr16_-_92826239_92826287	0.769847	NANOG.p2	BC069929|Runx1|12394|runt related transcription factor 1	AK137493|Runx1|12394|runt related transcription factor 1
mm9_v1_chr11_+_87476588_87476588	0.761104	NANOG.p2	AK032782|Rnf43|207742|ring finger protein 43	NM_172448|Rnf43|207742|ring finger protein 43
mm9_v1_chr10_+_127931369_127931415	0.756774	NANOG.p2	AK017625|Myl6b|216459|myosin, light polypeptide 6B
mm9_v1_chr15_+_98929891_98929938	0.756692	NANOG.p2	AK013323|Dnajc22|72778|DnaJ (Hsp40) homolog, subfamily C, member 22	BC039633|Dnajc22|72778|DnaJ (Hsp40) homolog, subfamily C, member 22	NM_176835|Dnajc22|72778|DnaJ (Hsp40) homolog, subfamily C, member 22	AK050294|Dnajc22|72778|DnaJ (Hsp40) homolog, subfamily C, member 22
mm9_v1_chr5_+_104599721_104599730	0.755367	NANOG.p2	U67916|Dspp|666279|dentin sialophosphoprotein	BC116172|Dspp|666279|dentin sialophosphoprotein	BC116173|Dspp|666279|dentin sialophosphoprotein	BC129802|Dspp|666279|dentin sialophosphoprotein	NM_010080|Dspp|666279|dentin sialophosphoprotein
mm9_v1_chr9_-_71011053_71011095	0.749826	NANOG.p2	BC024105|Aqp9|64008|aquaporin 9	AK050042|Aqp9|64008|aquaporin 9	NM_022026|Aqp9|64008|aquaporin 9
mm9_v1_chr2_-_147011990_147012137	0.747322	NANOG.p2	AK043561|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	BC138159|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	BC138160|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	U31566|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	AK141002|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	NM_001077632|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	NM_010919|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)
mm9_v1_chr9_-_103595136_103595138	0.745055	NANOG.p2	AK132350|Tmem108|81907|transmembrane protein 108
mm9_v1_chr12_-_88729144_88729282	0.742262	NANOG.p2	U27455|Sptlc2|20773|serine palmitoyltransferase, long chain base subunit 2	X95642|Sptlc2|20773|serine palmitoyltransferase, long chain base subunit 2	AK089019|Sptlc2|20773|serine palmitoyltransferase, long chain base subunit 2	AK008871|Sptlc2|20773|serine palmitoyltransferase, long chain base subunit 2	AK044917|Sptlc2|20773|serine palmitoyltransferase, long chain base subunit 2	AK159346|Sptlc2|20773|serine palmitoyltransferase, long chain base subunit 2	NM_011479|Sptlc2|20773|serine palmitoyltransferase, long chain base subunit 2	BC003227|Sptlc2|20773|serine palmitoyltransferase, long chain base subunit 2	AK057644|Sptlc2|20773|serine palmitoyltransferase, long chain base subunit 2
mm9_v1_chrX_+_130385546_130385673	0.741529	NANOG.p2	BC049944|Tnmd|64103|tenomodulin	NM_022322|Tnmd|64103|tenomodulin	AF191768|Tnmd|64103|tenomodulin	AK003748|Tnmd|64103|tenomodulin	AF219993|Tnmd|64103|tenomodulin
mm9_v1_chr5_+_31216131_31216188	0.740825	NANOG.p2	AK138020|Emilin1|100952|elastin microfibril interfacer 1	BC005481|Emilin1|100952|elastin microfibril interfacer 1	NM_133918|Emilin1|100952|elastin microfibril interfacer 1	AK029337|Emilin1|100952|elastin microfibril interfacer 1
mm9_v1_chr4_-_132066370_132066424	0.740536	NANOG.p2	BC005672|Sesn2|230784|sestrin 2	NM_144907|Sesn2|230784|sestrin 2	AK170228|Sesn2|230784|sestrin 2	AK170547|Sesn2|230784|sestrin 2	AK143788|Sesn2|230784|sestrin 2
mm9_v1_chr10_+_34109784_34109787	0.738391	NANOG.p2	NM_009925|Col10a1|12813|collagen, type X, alpha 1
mm9_v1_chr2_-_121282428_121282516	0.7355	NANOG.p2	BC026459|Serinc4|574418|serine incorporator 4	BC083132|Serinc4|574418|serine incorporator 4	NM_001025371|Serinc4|574418|serine incorporator 4	AK044479|Serinc4|574418|serine incorporator 4
mm9_v1_chr11_+_68702054_68702054	0.722986	NANOG.p2	AK028294|Rnf222|320040|ring finger protein 222	NM_177060|Rnf222|320040|ring finger protein 222
mm9_v1_chr1_-_138856866_138857085	0.71952	NANOG.p2	AB221629|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	BC137845|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	M81385|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	NM_030676|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2
mm9_v1_chr8_+_97197548_97197604	0.716033	NANOG.p2	AK209782|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein
mm9_v1_chr10_-_13043959_13044096	0.714713	NANOG.p2	BC130264|Phactr2|215789|phosphatase and actin regulator 2	AK142930|Phactr2|215789|phosphatase and actin regulator 2	NM_001033257|Phactr2|215789|phosphatase and actin regulator 2	NM_001195096|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr11_-_69229653_69229709	0.71316	NANOG.p2	BC075632|Kdm6b|216850|KDM1 lysine (K)-specific demethylase 6B
mm9_v1_chr19_-_4287408_4287579	0.71195	NANOG.p2	AK153543|Adrbk1|110355|adrenergic receptor kinase, beta 1
mm9_v1_chr10_-_60895433_60895442	0.708904	NANOG.p2	AK216330|Eif4ebp2|13688|eukaryotic translation initiation factor 4E binding protein 2
mm9_v1_chr11_+_117623703_117623821	0.708143	NANOG.p2	AK137381|Tnrc6c|217351|trinucleotide repeat containing 6C
mm9_v1_chr16_-_92826307_92826318	0.707031	NANOG.p2	AK165307|Runx1|12394|runt related transcription factor 1	AK145098|Runx1|12394|runt related transcription factor 1	NM_001111021|Runx1|12394|runt related transcription factor 1	NM_001111022|Runx1|12394|runt related transcription factor 1	AK040240|Runx1|12394|runt related transcription factor 1
mm9_v1_chrX_+_90920450_90920749	0.70287	NANOG.p2	NM_211138|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	BC048917|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189949|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK032027|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chr2_+_163372996_163373098	0.702013	NANOG.p2	D29015|Hnf4a|15378|hepatic nuclear factor 4, alpha	EF193393|Hnf4a|15378|hepatic nuclear factor 4, alpha
mm9_v1_chr10_+_101621712_101621712	0.701724	NANOG.p2	AK032009|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)	NM_001162369|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm9_v1_chr12_-_16747022_16747030	0.697262	NANOG.p2	AK147337|Greb1|268527|gene regulated by estrogen in breast cancer protein
mm9_v1_chr17_+_70871393_70871416	0.695283	NANOG.p2	AK036307|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr13_-_76081343_76081394	0.694069	NANOG.p2	AK081381|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr1_+_134195202_134195202	0.686551	NANOG.p2	AK080356|Klhdc8a|213417|kelch domain containing 8A	NM_144810|Klhdc8a|213417|kelch domain containing 8A
mm9_v1_chr17_-_45611774_45611886	0.68506	NANOG.p2	AY336501|Spats1|71020|spermatogenesis associated, serine-rich 1	AK016586|Spats1|71020|spermatogenesis associated, serine-rich 1	AK165435|Spats1|71020|spermatogenesis associated, serine-rich 1	BC131909|Spats1|71020|spermatogenesis associated, serine-rich 1	AK005865|Spats1|71020|spermatogenesis associated, serine-rich 1	NM_027649|Spats1|71020|spermatogenesis associated, serine-rich 1
mm9_v1_chr7_-_49128039_49128039	0.682953	NANOG.p2	NM_001105055|Vmn2r58|628422|vomeronasal 2, receptor 58
mm9_v1_chr12_+_75028976_75029036	0.680788	NANOG.p2	AK076395|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr12_-_57636046_57636092	0.680593	NANOG.p2	AB221567|Nkx2-1|21869|NK2 homeobox 1	NM_001146198|Nkx2-1|21869|NK2 homeobox 1
mm9_v1_chr6_-_130287518_130287643	0.678107	NANOG.p2	U56404|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	U56405|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC101952|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC103543|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC103544|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC103545|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC132524|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC132526|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC145192|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC145193|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	U10305|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	AK159595|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	U49868|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	NM_010648|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	U09739|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3
mm9_v1_chr14_+_55506625_55506792	0.676953	NANOG.p2	AK020321|Bcl2l2|12050|BCL2-like 2	AK020923|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr19_-_44060949_44061012	0.675282	NANOG.p2	BC014692|Cpn1|93721|carboxypeptidase N, polypeptide 1	AB021969|Cpn1|93721|carboxypeptidase N, polypeptide 1	AF326477|Cpn1|93721|carboxypeptidase N, polypeptide 1	NM_030703|Cpn1|93721|carboxypeptidase N, polypeptide 1
mm9_v1_chr13_+_3564316_3564379	0.673483	NANOG.p2	AF095728|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2
mm9_v1_chr14_-_51765134_51765162	0.66887	NANOG.p2	AK019019|Rnase1|19752|ribonuclease, RNase A family, 1 (pancreatic)
mm9_v1_chr3_-_91927868_91927868	0.668556	NANOG.p2	AK079463|Prr9|109314|proline rich 9	NM_175424|Prr9|109314|proline rich 9
mm9_v1_chr15_+_80629020_80629144	0.668556	NANOG.p2	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr1_-_74590801_74590859	0.668434	NANOG.p2	BC139091|Usp37|319651|ubiquitin specific peptidase 37	AK133317|Usp37|319651|ubiquitin specific peptidase 37	AK030013|Usp37|319651|ubiquitin specific peptidase 37	NM_176972|Usp37|319651|ubiquitin specific peptidase 37
mm9_v1_chr6_-_115568804_115568831	0.668243	NANOG.p2	AK189599|Raf1|110157|v-raf-leukemia viral oncogene 1
mm9_v1_chr9_+_94570310_94570389	0.667228	NANOG.p2	NM_177909|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK037058|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	BC153825|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	BC099942|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK172687|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK156494|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9
mm9_v1_chr12_+_78576551_78576710	0.667157	NANOG.p2	AK188352|Fut8|53618|fucosyltransferase 8	AK210295|Fut8|53618|fucosyltransferase 8	AK216622|Fut8|53618|fucosyltransferase 8
mm9_v1_chr5_-_49280703_49280795	0.659327	NANOG.p2	AF453243|Kcnip4|80334|Kv channel interacting protein 4	AK165773|Kcnip4|80334|Kv channel interacting protein 4	AK049662|Kcnip4|80334|Kv channel interacting protein 4	DQ148503|Kcnip4|80334|Kv channel interacting protein 4	AK039048|Kcnip4|80334|Kv channel interacting protein 4	NM_030265|Kcnip4|80334|Kv channel interacting protein 4
mm9_v1_chr16_-_89420354_89420355	0.650943	NANOG.p2	BC116356|Krtap6-2|16701|keratin associated protein 6-2	BC116357|Krtap6-2|16701|keratin associated protein 6-2	D89902|Krtap6-2|16701|keratin associated protein 6-2	NM_010673|Krtap6-2|16701|keratin associated protein 6-2
mm9_v1_chr15_+_9365782_9365824	0.645426	NANOG.p2	AK006467|Capsl|75568|calcyphosine-like	NM_029341|Capsl|75568|calcyphosine-like	BC061015|Capsl|75568|calcyphosine-like
mm9_v1_chr12_-_76815494_76815519	0.644973	NANOG.p2	
mm9_v1_chr2_-_26923387_26923387	0.640707	NANOG.p2	NM_001159602|Tmem8c|66139|transmembrane protein 8C
mm9_v1_chr7_-_116867284_116867363	0.639574	NANOG.p2	BC051019|BC051019|57355|cDNA sequence BC051019	NM_001040700|BC051019|57355|cDNA sequence BC051019	AK143006|BC051019|57355|cDNA sequence BC051019
mm9_v1_chr5_+_104754347_104754401	0.638743	NANOG.p2	AF298661|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)	NM_053172|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)	AK158231|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)	AK158330|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)	AF314964|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)	BC119162|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)
mm9_v1_chr5_+_73398142_73398230	0.635714	NANOG.p2	AK087479|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4	AK149202|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4	NM_173403|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4	BC132529|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4	BC138048|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4
mm9_v1_chr11_-_99105293_99105435	0.634096	NANOG.p2	BC079890|Krt222|268481|keratin 222	AK031954|Krt222|268481|keratin 222	NM_172946|Krt222|268481|keratin 222	AK044068|Krt222|268481|keratin 222	AK138778|Krt222|268481|keratin 222
mm9_v1_chr2_-_155979971_155980032	0.631751	NANOG.p2	AK046526|Rbm39|170791|RNA binding motif protein 39
mm9_v1_chr17_-_31335918_31335919	0.623863	NANOG.p2	NM_001163776|Tmprss3|140765|transmembrane protease, serine 3	AK158203|Tmprss3|140765|transmembrane protease, serine 3
mm9_v1_chr15_+_78860623_78860757	0.623401	NANOG.p2	
mm9_v1_chr4_-_106812064_106812078	0.623036	NANOG.p2	AK186076|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene
mm9_v1_chr2_+_181501718_181501871	0.620357	NANOG.p2	AK165786|Myt1|17932|myelin transcription factor 1	NM_001171616|Myt1|17932|myelin transcription factor 1	NM_008665|Myt1|17932|myelin transcription factor 1	AB082378|Myt1|17932|myelin transcription factor 1	AK082994|Myt1|17932|myelin transcription factor 1
mm9_v1_chr6_+_57354359_57354457	0.618263	NANOG.p2	BC125351|Vmn1r19|171200|vomeronasal 1 receptor 19	BC132235|Vmn1r19|171200|vomeronasal 1 receptor 19	NM_134182|Vmn1r19|171200|vomeronasal 1 receptor 19
mm9_v1_chr9_-_42062436_42062522	0.615466	NANOG.p2	AK050439|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)	AK165139|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)
mm9_v1_chr14_-_31756446_31756482	0.614126	NANOG.p2	BC013465|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	X70391|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	BC028814|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	AK149500|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	NM_008406|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1
mm9_v1_chr15_-_82742536_82742563	0.611215	NANOG.p2	BC138038|Tcf20|21411|transcription factor 20	BC171946|Tcf20|21411|transcription factor 20	AY007594|Tcf20|21411|transcription factor 20	NM_001114140|Tcf20|21411|transcription factor 20	NM_013836|Tcf20|21411|transcription factor 20
mm9_v1_chr6_+_106068758_106068758	0.606962	NANOG.p2	AK043507|Cntn4|269784|contactin 4	NM_001109751|Cntn4|269784|contactin 4
mm9_v1_chr1_-_173957316_173957398	0.605789	NANOG.p2	AK033128|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AY035370|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AK129311|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	BC052195|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	NM_033509|Vangl2|93840|vang-like 2 (van gogh, Drosophila)
mm9_v1_chr15_-_101363197_101363254	0.605598	NANOG.p2	AY028607|Krt84|16680|keratin 84	BC114971|Krt84|16680|keratin 84	NM_008474|Krt84|16680|keratin 84
mm9_v1_chrX_+_109608882_109608925	0.604379	NANOG.p2	AK017156|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene	NM_001168590|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene	NM_026333|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene	AK008319|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene	BC139480|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene	BC139481|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene
mm9_v1_chr5_-_147396407_147396450	0.603381	NANOG.p2	D21061|Gpr12|14738|G-protein coupled receptor 12
mm9_v1_chr10_-_101953046_101953066	0.602525	NANOG.p2	AF304160|Nts|67405|neurotensin	BC043024|Nts|67405|neurotensin	NM_024435|Nts|67405|neurotensin	AK017202|Nts|67405|neurotensin	AK017212|Nts|67405|neurotensin
mm9_v1_chr1_-_178766242_178766293	0.599788	NANOG.p2	BC064076|Hmga2-ps1|15365|high mobility group AT-hook 2, pseudogene 1	AK033703|Hmga2-ps1|15365|high mobility group AT-hook 2, pseudogene 1
mm9_v1_chr7_+_133924996_133925020	0.598619	NANOG.p2	BC140951|Tbx6|21389|T-box 6	NM_011538|Tbx6|21389|T-box 6	U57331|Tbx6|21389|T-box 6	AY654733|Tbx6|21389|T-box 6
mm9_v1_chr4_+_66488606_66488658	0.597936	NANOG.p2	BC029856|Tlr4|21898|toll-like receptor 4	AK014533|Tlr4|21898|toll-like receptor 4	AK030348|Tlr4|21898|toll-like receptor 4	AF095353|Tlr4|21898|toll-like receptor 4
mm9_v1_chr5_-_51848420_51848454	0.592853	NANOG.p2	AK032149|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK082685|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK043827|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm9_v1_chr15_-_43701569_43701581	0.592278	NANOG.p2	BC076589|Tmem74|239408|transmembrane protein 74	AK046420|Tmem74|239408|transmembrane protein 74	NM_175502|Tmem74|239408|transmembrane protein 74	AK045145|Tmem74|239408|transmembrane protein 74
mm9_v1_chr3_+_125106995_125107008	0.591958	NANOG.p2	AF520870|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	AK140992|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	NM_022565|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
mm9_v1_chr4_+_19207954_19207996	0.590816	NANOG.p2	BC100395|Cngb3|30952|cyclic nucleotide gated channel beta 3	AJ243572|Cngb3|30952|cyclic nucleotide gated channel beta 3	NM_013927|Cngb3|30952|cyclic nucleotide gated channel beta 3
mm9_v1_chr1_+_173085648_173085681	0.590266	NANOG.p2	AK157960|Mpz|17528|myelin protein zero	BC139139|Mpz|17528|myelin protein zero	BC141226|Mpz|17528|myelin protein zero
mm9_v1_chr11_+_67611772_67611789	0.589843	NANOG.p2	NM_001013013|Dhrs7c|68460|dehydrogenase/reductase (SDR family) member 7C	AK003267|Dhrs7c|68460|dehydrogenase/reductase (SDR family) member 7C	BC039565|Dhrs7c|68460|dehydrogenase/reductase (SDR family) member 7C
mm9_v1_chr10_+_85061155_85061265	0.58708	NANOG.p2	NM_001017525|Btbd11|74007|BTB (POZ) domain containing 11	AK044022|Btbd11|74007|BTB (POZ) domain containing 11
mm9_v1_chr7_+_77509969_77510044	0.584343	NANOG.p2	BC070425|B130024G19Rik|434198|RIKEN cDNA B130024G19 gene
mm9_v1_chr11_-_83242956_83243022	0.583432	NANOG.p2	NM_001013759|Gas2l2|237891|growth arrest-specific 2 like 2	BC147480|Gas2l2|237891|growth arrest-specific 2 like 2	BC150847|Gas2l2|237891|growth arrest-specific 2 like 2
mm9_v1_chr14_+_34754224_34754255	0.577264	NANOG.p2	AF156890|Gdf2|12165|growth differentiation factor 2	AK147029|Gdf2|12165|growth differentiation factor 2	NM_019506|Gdf2|12165|growth differentiation factor 2	BC103625|Gdf2|12165|growth differentiation factor 2	BC103679|Gdf2|12165|growth differentiation factor 2	BC103680|Gdf2|12165|growth differentiation factor 2	BC103681|Gdf2|12165|growth differentiation factor 2
mm9_v1_chr16_+_30065419_30065442	0.577196	NANOG.p2	AK133538|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	AK132536|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	BC018375|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	BC051428|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	NM_008235|Hes1|15205|hairy and enhancer of split 1 (Drosophila)
mm9_v1_chr16_+_49911557_49911575	0.575215	NANOG.p2	AK164165|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	AK021021|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm9_v1_chr6_+_58257261_58257290	0.574414	NANOG.p2	BC150722|Vmn1r29|113859|vomeronasal 1 receptor 29	NM_053232|Vmn1r29|113859|vomeronasal 1 receptor 29
mm9_v1_chr1_+_100028032_100028043	0.573702	NANOG.p2	AK007349|1810006J02Rik|69030|RIKEN cDNA 1810006J02 gene
mm9_v1_chr8_+_23734514_23734514	0.564049	NANOG.p2	BC018400|Dkk4|234130|dickkopf homolog 4 (Xenopus laevis)	NM_145592|Dkk4|234130|dickkopf homolog 4 (Xenopus laevis)
mm9_v1_chr14_-_53110720_53110720	0.563932	NANOG.p2	BC119163|Olfr1507|57269|olfactory receptor 1507	BC119165|Olfr1507|57269|olfactory receptor 1507	NM_020512|Olfr1507|57269|olfactory receptor 1507
mm9_v1_chr18_+_34480612_34480673	0.563315	NANOG.p2	AK137301|Apc|11789|adenomatosis polyposis coli
mm9_v1_chr15_-_79363346_79363346	0.562376	NANOG.p2	NM_152806|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
mm9_v1_chr11_+_118295166_118295166	0.561372	NANOG.p2	AF192499|C1qtnf1|56745|C1q and tumor necrosis factor related protein 1	NM_019959|C1qtnf1|56745|C1q and tumor necrosis factor related protein 1
mm9_v1_chr2_+_4480799_4480871	0.560402	NANOG.p2	AK077327|Frmd4a|209630|FERM domain containing 4A	NM_001177844|Frmd4a|209630|FERM domain containing 4A	AK148414|Frmd4a|209630|FERM domain containing 4A	AK029073|Frmd4a|209630|FERM domain containing 4A	AK171532|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr9_-_96531911_96531965	0.558366	NANOG.p2	AB056433|Rasa2|114713|RAS p21 protein activator 2	AK034434|Rasa2|114713|RAS p21 protein activator 2	NM_053268|Rasa2|114713|RAS p21 protein activator 2	AK154499|Rasa2|114713|RAS p21 protein activator 2	AK166654|Rasa2|114713|RAS p21 protein activator 2
mm9_v1_chr7_+_77510266_77510283	0.556987	NANOG.p2	AK045070|B130024G19Rik|434198|RIKEN cDNA B130024G19 gene
mm9_v1_chr11_-_99489523_99489552	0.555399	NANOG.p2	BC147087|Krtap4-1|665891|keratin associated protein 4-1	BC147088|Krtap4-1|665891|keratin associated protein 4-1	AK137752|Krtap4-1|665891|keratin associated protein 4-1	NM_001048196|Krtap4-1|665891|keratin associated protein 4-1
mm9_v1_chr13_-_56353523_56353523	0.552368	NANOG.p2	BC062148|Neurog1|18014|neurogenin 1	NM_010896|Neurog1|18014|neurogenin 1
mm9_v1_chr7_+_52436364_52436364	0.549557	NANOG.p2	AY048587|Pth2|114640|parathyroid hormone 2	NM_053256|Pth2|114640|parathyroid hormone 2
mm9_v1_chr12_-_35213738_35213753	0.546346	NANOG.p2	BC098187|Hdac9|79221|histone deacetylase 9	NM_024124|Hdac9|79221|histone deacetylase 9
mm9_v1_chr6_-_35258102_35258131	0.543974	NANOG.p2	BC089161|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK036354|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	NM_172892|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK038937|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK139428|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4
mm9_v1_chr15_-_102347434_102347445	0.540909	NANOG.p2	NM_001163643|Map3k12|26404|mitogen-activated protein kinase kinase kinase 12	NM_009582|Map3k12|26404|mitogen-activated protein kinase kinase kinase 12
mm9_v1_chr8_-_119098475_119098517	0.53988	NANOG.p2	
mm9_v1_chr18_+_24762433_24762495	0.53928	NANOG.p2	AK050960|Elp2|58523|elongation protein 2 homolog (S. cerevisiae)	AK147826|Elp2|58523|elongation protein 2 homolog (S. cerevisiae)	AK168370|Elp2|58523|elongation protein 2 homolog (S. cerevisiae)	NM_021448|Elp2|58523|elongation protein 2 homolog (S. cerevisiae)	AK033246|Elp2|58523|elongation protein 2 homolog (S. cerevisiae)	AK034457|Elp2|58523|elongation protein 2 homolog (S. cerevisiae)	AK167725|Elp2|58523|elongation protein 2 homolog (S. cerevisiae)	AK167853|Elp2|58523|elongation protein 2 homolog (S. cerevisiae)	BC015284|Elp2|58523|elongation protein 2 homolog (S. cerevisiae)	BC051943|Elp2|58523|elongation protein 2 homolog (S. cerevisiae)	AK044699|Elp2|58523|elongation protein 2 homolog (S. cerevisiae)	AF291064|Elp2|58523|elongation protein 2 homolog (S. cerevisiae)
mm9_v1_chrX_-_47141382_47141419	0.539189	NANOG.p2	BC119264|Igsf1|209268|immunoglobulin superfamily, member 1	BC119266|Igsf1|209268|immunoglobulin superfamily, member 1	BC144762|Igsf1|209268|immunoglobulin superfamily, member 1	AK076427|Igsf1|209268|immunoglobulin superfamily, member 1	AY227774|Igsf1|209268|immunoglobulin superfamily, member 1	AK030701|Igsf1|209268|immunoglobulin superfamily, member 1	NM_183336|Igsf1|209268|immunoglobulin superfamily, member 1
mm9_v1_chr1_+_58267240_58267313	0.537069	NANOG.p2	AK158427|Aox4|71872|aldehyde oxidase 4	NM_023631|Aox4|71872|aldehyde oxidase 4	AK160953|Aox4|71872|aldehyde oxidase 4	AK081746|Aox4|71872|aldehyde oxidase 4	AF233581|Aox4|71872|aldehyde oxidase 4	BC117975|Aox4|71872|aldehyde oxidase 4	BC117976|Aox4|71872|aldehyde oxidase 4
mm9_v1_chr1_-_173957407_173957430	0.536518	NANOG.p2	AK049613|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AK046036|Vangl2|93840|vang-like 2 (van gogh, Drosophila)
mm9_v1_chr5_-_122907269_122907331	0.534297	NANOG.p2	AK195483|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK198267|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK202908|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK209825|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	BC022584|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr18_+_37514924_37514931	0.5335	NANOG.p2	AY013790|Pcdhb8|93879|protocadherin beta 8	BC116268|Pcdhb8|93879|protocadherin beta 8	BC127160|Pcdhb8|93879|protocadherin beta 8	NM_053133|Pcdhb8|93879|protocadherin beta 8	BC116269|Pcdhb8|93879|protocadherin beta 8
mm9_v1_chrX_+_71372802_71372832	0.531376	NANOG.p2	AF190672|Opn1mw|14539|opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)	AK149287|Opn1mw|14539|opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)	NM_008106|Opn1mw|14539|opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)	BC014826|Opn1mw|14539|opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)	AF011389|Opn1mw|14539|opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)
mm9_v1_chr3_+_105261699_105261733	0.530826	NANOG.p2	BC141097|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	BC141098|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AF107781|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AF107782|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	NM_019931|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr1_+_136186579_136186632	0.530346	NANOG.p2	NM_031189|Myog|17928|myogenin	X15784|Myog|17928|myogenin	D90156|Myog|17928|myogenin	BC068019|Myog|17928|myogenin	AB221643|Myog|17928|myogenin
mm9_v1_chr7_+_4085699_4085709	0.529767	NANOG.p2	AK081274|Ttyh1|57776|tweety homolog 1 (Drosophila)
mm9_v1_chr9_-_73781373_73781373	0.527965	NANOG.p2	NM_001081153|Unc13c|208898|unc-13 homolog C (C. elegans)
mm9_v1_chr15_-_101573522_101573539	0.52386	NANOG.p2	BC125346|Krt71|56735|keratin 71	BC125348|Krt71|56735|keratin 71	AB033744|Krt71|56735|keratin 71	AB100413|Krt71|56735|keratin 71	AY033497|Krt71|56735|keratin 71	NM_019956|Krt71|56735|keratin 71	AK003610|Krt71|56735|keratin 71	AK003704|Krt71|56735|keratin 71
mm9_v1_chr8_+_124474475_124474479	0.523442	NANOG.p2	AK170884|Banp|53325|BTG3 associated nuclear protein	AF091234|Banp|53325|BTG3 associated nuclear protein	AF235503|Banp|53325|BTG3 associated nuclear protein
mm9_v1_chr16_-_88708151_88708206	0.523149	NANOG.p2	BC133700|2310061N02Rik|69661|RIKEN cDNA 2310061N02 gene	AK010010|2310061N02Rik|69661|RIKEN cDNA 2310061N02 gene	NM_027155|2310061N02Rik|69661|RIKEN cDNA 2310061N02 gene
mm9_v1_chr7_+_152024499_152024558	0.522286	NANOG.p2	AK133901|Fgf3|14174|fibroblast growth factor 3	X52014|Fgf3|14174|fibroblast growth factor 3	NM_008007|Fgf3|14174|fibroblast growth factor 3	BC117059|Fgf3|14174|fibroblast growth factor 3	BC117061|Fgf3|14174|fibroblast growth factor 3
mm9_v1_chr2_+_109120894_109121025	0.518768	NANOG.p2	BC016095|Kif18a|228421|kinesin family member 18A	NM_139303|Kif18a|228421|kinesin family member 18A	AK049197|Kif18a|228421|kinesin family member 18A	AK135735|Kif18a|228421|kinesin family member 18A	AK082913|Kif18a|228421|kinesin family member 18A	AK041469|Kif18a|228421|kinesin family member 18A	AK044795|Kif18a|228421|kinesin family member 18A	AK164649|Kif18a|228421|kinesin family member 18A	AK036722|Kif18a|228421|kinesin family member 18A	AK164114|Kif18a|228421|kinesin family member 18A
mm9_v1_chr19_+_56623108_56623165	0.516409	NANOG.p2	AK004564|Nhlrc2|66866|NHL repeat containing 2	AK002650|Nhlrc2|66866|NHL repeat containing 2
mm9_v1_chr2_+_51893618_51893676	0.515951	NANOG.p2	AK139985|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6	NM_009398|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6	U83903|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6	BC021155|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6
mm9_v1_chr6_+_57020888_57020888	0.51586	NANOG.p2	BC132241|Vmn1r9|171203|vomeronasal 1 receptor 9	BC132577|Vmn1r9|171203|vomeronasal 1 receptor 9	NM_134185|Vmn1r9|171203|vomeronasal 1 receptor 9
mm9_v1_chr4_+_133624366_133624437	0.513936	NANOG.p2	AK145690|Aim1l|230806|absent in melanoma 1-like	NM_001162970|Aim1l|230806|absent in melanoma 1-like	BC150738|Aim1l|230806|absent in melanoma 1-like
mm9_v1_chr13_+_78337168_78337277	0.512804	NANOG.p2	AK082108|A830082K12Rik|320174|RIKEN cDNA A830082K12 gene
mm9_v1_chr19_+_8665743_8665780	0.506625	NANOG.p2	NM_001164634|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	NM_031194|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	AK031962|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8
mm9_v1_chr12_+_73889998_73890039	0.50588	NANOG.p2	AK009105|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform
mm9_v1_chr9_-_29770699_29770842	0.503062	NANOG.p2	AK138263|Ntm|235106|neurotrimin	AK045973|Ntm|235106|neurotrimin	AK046377|Ntm|235106|neurotrimin	NM_172290|Ntm|235106|neurotrimin	AK042854|Ntm|235106|neurotrimin	AK140516|Ntm|235106|neurotrimin	AK020998|Ntm|235106|neurotrimin	AK020745|Ntm|235106|neurotrimin
mm9_v1_chr7_-_77511242_77511282	0.496239	NANOG.p2	AK012573|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	AK012322|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2
mm9_v1_chr11_+_95343299_95343327	0.495731	NANOG.p2	
mm9_v1_chr17_+_34462609_34462619	0.494573	NANOG.p2	AK157199|H2-Eb2|381091|histocompatibility 2, class II antigen E beta2	AK137912|H2-Eb2|381091|histocompatibility 2, class II antigen E beta2	BC150834|H2-Eb2|381091|histocompatibility 2, class II antigen E beta2	NM_001033978|H2-Eb2|381091|histocompatibility 2, class II antigen E beta2
mm9_v1_chr11_-_106642684_106642809	0.489728	NANOG.p2	AK149022|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr10_+_80611198_80611320	0.488487	NANOG.p2	AK078088|Zbtb7a|16969|zinc finger and BTB domain containing 7a
mm9_v1_chr3_-_153573930_153573930	0.486669	NANOG.p2	NM_001163479|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit
mm9_v1_chr18_+_4165829_4165870	0.485283	NANOG.p2	AK006241|Lyzl1|67328|lysozyme-like 1	AK006630|Lyzl1|67328|lysozyme-like 1	NM_026092|Lyzl1|67328|lysozyme-like 1	BC048450|Lyzl1|67328|lysozyme-like 1	AY572447|Lyzl1|67328|lysozyme-like 1
mm9_v1_chr8_-_49928495_49928639	0.483515	NANOG.p2	AK013771|2900073C17Rik|73020|RIKEN cDNA 2900073C17 gene
mm9_v1_chr7_-_105310843_105310876	0.480354	NANOG.p2	BC014767|Capn5|12337|calpain 5
mm9_v1_chr17_-_20761835_20761840	0.479544	NANOG.p2	BC134352|Fpr-rs3|14290|formyl peptide receptor, related sequence 3	NM_008040|Fpr-rs3|14290|formyl peptide receptor, related sequence 3
mm9_v1_chr3_-_107957795_107957821	0.4794	NANOG.p2	AK032627|Gpr61|229714|G protein-coupled receptor 61	AK133702|Gpr61|229714|G protein-coupled receptor 61	NM_175470|Gpr61|229714|G protein-coupled receptor 61
mm9_v1_chr7_-_106289649_106289650	0.478954	NANOG.p2	AK154903|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr4_-_94595442_94595518	0.475854	NANOG.p2	AB438105|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	AB438106|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	AK006446|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	DQ336137|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	AK016313|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	BC089517|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	NM_027089|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	AK016738|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	EU828781|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene	EU828782|4930579C15Rik|67753|RIKEN cDNA 4930579C15 gene
mm9_v1_chr9_+_75623367_75623480	0.473375	NANOG.p2	BC141283|Bmp5|12160|bone morphogenetic protein 5
mm9_v1_chr7_+_97575023_97575086	0.462479	NANOG.p2	BC060150|Ccdc89|70054|coiled-coil domain containing 89
mm9_v1_chr2_+_80478960_80478972	0.457204	NANOG.p2	NM_027091|Nup35|69482|nucleoporin 35	AK089997|Nup35|69482|nucleoporin 35
mm9_v1_chr13_+_27248667_27248686	0.449409	NANOG.p2	AF525161|Prl3d3|215029|prolactin family 3, subfamily d, member 3	NM_172156|Prl3d3|215029|prolactin family 3, subfamily d, member 3	BC068253|Prl3d3|215029|prolactin family 3, subfamily d, member 3
mm9_v1_chrX_+_23270202_23270284	0.446563	NANOG.p2	AK049071|Wdr44|72404|WD repeat domain 44	AK088885|Wdr44|72404|WD repeat domain 44	BC068151|Wdr44|72404|WD repeat domain 44	NM_175180|Wdr44|72404|WD repeat domain 44	BC049191|Wdr44|72404|WD repeat domain 44	AK011669|Wdr44|72404|WD repeat domain 44
mm9_v1_chr6_-_90612275_90612375	0.445764	NANOG.p2	AK044711|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr10_-_60895686_60895691	0.444843	NANOG.p2	AK147814|Eif4ebp2|13688|eukaryotic translation initiation factor 4E binding protein 2
mm9_v1_chr2_+_142904128_142904227	0.444618	NANOG.p2	BC139152|Otor|57329|otoraplin	BC139153|Otor|57329|otoraplin	AK047965|Otor|57329|otoraplin	AJ243939|Otor|57329|otoraplin	AF243504|Otor|57329|otoraplin	NM_020595|Otor|57329|otoraplin
mm9_v1_chr8_+_85872246_85872370	0.442788	NANOG.p2	HM067443|4933434I20Rik|67555|RIKEN cDNA 4933434I20 gene	AK016272|4933434I20Rik|67555|RIKEN cDNA 4933434I20 gene	NM_026233|4933434I20Rik|67555|RIKEN cDNA 4933434I20 gene
mm9_v1_chr9_-_15162159_15162231	0.440446	NANOG.p2	NM_176976|5830418K08Rik|319675|RIKEN cDNA 5830418K08 gene
mm9_v1_chrX_+_21292025_21292267	0.438324	NANOG.p2	NM_020049|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	AF161714|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	AF320226|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	AK018553|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	BC129908|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	BC129909|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	AB033285|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14
mm9_v1_chr19_-_46107484_46107619	0.438219	NANOG.p2	AK210031|Ldb1|16825|LIM domain binding 1
mm9_v1_chr14_+_79826199_79826317	0.437295	NANOG.p2	AK135854|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7	BC096019|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7	NM_001024135|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7
mm9_v1_chr8_-_46380114_46380132	0.435966	NANOG.p2	BC026555|Klkb1|16621|kallikrein B, plasma 1
mm9_v1_chr2_-_35959513_35959579	0.435275	NANOG.p2	BC065077|Lhx6|16874|LIM homeobox protein 6	AB031039|Lhx6|16874|LIM homeobox protein 6	AB031040|Lhx6|16874|LIM homeobox protein 6	NM_001083126|Lhx6|16874|LIM homeobox protein 6	NM_001083127|Lhx6|16874|LIM homeobox protein 6
mm9_v1_chr8_+_96561097_96561129	0.433947	NANOG.p2	AK029629|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	NM_001093757|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	NM_177767|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	AK156765|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1
mm9_v1_chr14_+_63665827_63665903	0.431918	NANOG.p2	AK079042|Defb42|619548|defensin beta 42	DQ012046|Defb42|619548|defensin beta 42	NM_001034910|Defb42|619548|defensin beta 42
mm9_v1_chrX_+_54296250_54296269	0.431589	NANOG.p2	AK038616|Brs3|12209|bombesin-like receptor 3	NM_009766|Brs3|12209|bombesin-like receptor 3	BC106961|Brs3|12209|bombesin-like receptor 3	BC106962|Brs3|12209|bombesin-like receptor 3
mm9_v1_chr18_+_67624482_67624504	0.430261	NANOG.p2	NM_144867|Slmo1|225655|slowmo homolog 1 (Drosophila)
mm9_v1_chr14_-_96918064_96918252	0.430256	NANOG.p2	AK031932|Klhl1|93688|kelch-like 1 (Drosophila)	AF252281|Klhl1|93688|kelch-like 1 (Drosophila)	BC094584|Klhl1|93688|kelch-like 1 (Drosophila)	NM_053105|Klhl1|93688|kelch-like 1 (Drosophila)
mm9_v1_chr8_+_72696276_72696336	0.426802	NANOG.p2	AK032711|Tmem161a|234371|transmembrane protein 161A	AK082916|Tmem161a|234371|transmembrane protein 161A	AK049979|Tmem161a|234371|transmembrane protein 161A	NM_145597|Tmem161a|234371|transmembrane protein 161A	AK082758|Tmem161a|234371|transmembrane protein 161A	AK147962|Tmem161a|234371|transmembrane protein 161A	AK088569|Tmem161a|234371|transmembrane protein 161A	AK167517|Tmem161a|234371|transmembrane protein 161A	BC021367|Tmem161a|234371|transmembrane protein 161A
mm9_v1_chr18_-_55149819_55149833	0.424222	NANOG.p2	AK051334|Zfp608|269023|zinc finger protein 608	NM_175751|Zfp608|269023|zinc finger protein 608
mm9_v1_chr5_-_53499398_53499436	0.423796	NANOG.p2	AK009811|Sel1l3|231238|sel-1 suppressor of lin-12-like 3 (C. elegans)
mm9_v1_chr16_-_63863905_63864000	0.422258	NANOG.p2	BC138641|Epha3|13837|Eph receptor A3	BC138643|Epha3|13837|Eph receptor A3	BC145349|Epha3|13837|Eph receptor A3	AK132335|Epha3|13837|Eph receptor A3	BC060164|Epha3|13837|Eph receptor A3	M68513|Epha3|13837|Eph receptor A3	M68515|Epha3|13837|Eph receptor A3	AK084921|Epha3|13837|Eph receptor A3	AK041935|Epha3|13837|Eph receptor A3	AK045219|Epha3|13837|Eph receptor A3	NM_010140|Epha3|13837|Eph receptor A3	BC093483|Epha3|13837|Eph receptor A3	AK089119|Epha3|13837|Eph receptor A3
mm9_v1_chr9_+_13632152_13632249	0.421661	NANOG.p2	AK145026|Fam76b|72826|family with sequence similarity 76, member B	BC043120|Fam76b|72826|family with sequence similarity 76, member B	NM_176836|Fam76b|72826|family with sequence similarity 76, member B	AK052430|Fam76b|72826|family with sequence similarity 76, member B	BC050870|Fam76b|72826|family with sequence similarity 76, member B
mm9_v1_chr10_+_3366075_3366075	0.419794	NANOG.p2	AK157384|Ipcef1|320495|interaction protein for cytohesin exchange factors 1	NM_001170800|Ipcef1|320495|interaction protein for cytohesin exchange factors 1	NM_001170801|Ipcef1|320495|interaction protein for cytohesin exchange factors 1	NM_001170802|Ipcef1|320495|interaction protein for cytohesin exchange factors 1
mm9_v1_chr7_+_49515422_49515422	0.418499	NANOG.p2	NM_001105058|Vmn2r61|637873|vomeronasal 2, receptor 61
mm9_v1_chr6_+_113339088_113339253	0.418365	NANOG.p2	AK003923|Arpc4|68089|actin related protein 2/3 complex, subunit 4	AK029462|Ttll3|101100|tubulin tyrosine ligase-like family, member 3	NM_001142732|Ttll3|101100|tubulin tyrosine ligase-like family, member 3
mm9_v1_chr7_+_138686380_138686476	0.418353	NANOG.p2	BC139482|Hmx3|15373|H6 homeobox 3	BC139483|Hmx3|15373|H6 homeobox 3	NM_008257|Hmx3|15373|H6 homeobox 3
mm9_v1_chr6_+_57087346_57087346	0.416219	NANOG.p2	BC104398|Vmn1r11|113860|vomeronasal 1 receptor 11	BC104399|Vmn1r11|113860|vomeronasal 1 receptor 11	NM_053233|Vmn1r11|113860|vomeronasal 1 receptor 11
mm9_v1_chr2_-_165710128_165710217	0.415537	NANOG.p2	AK038961|Zmynd8|228880|zinc finger, MYND-type containing 8	AK155864|Zmynd8|228880|zinc finger, MYND-type containing 8	BC048186|Zmynd8|228880|zinc finger, MYND-type containing 8	NM_027230|Zmynd8|228880|zinc finger, MYND-type containing 8
mm9_v1_chr6_-_72383243_72383360	0.411553	NANOG.p2	AK191201|Mat2a|232087|methionine adenosyltransferase II, alpha	AK191379|Mat2a|232087|methionine adenosyltransferase II, alpha	AK192240|Mat2a|232087|methionine adenosyltransferase II, alpha	AK195580|Mat2a|232087|methionine adenosyltransferase II, alpha	AK196623|Mat2a|232087|methionine adenosyltransferase II, alpha	AK197103|Mat2a|232087|methionine adenosyltransferase II, alpha	AK200816|Mat2a|232087|methionine adenosyltransferase II, alpha	AK203805|Mat2a|232087|methionine adenosyltransferase II, alpha	AK203913|Mat2a|232087|methionine adenosyltransferase II, alpha	AK201922|Mat2a|232087|methionine adenosyltransferase II, alpha
mm9_v1_chr17_-_49703661_49703689	0.404433	NANOG.p2	BC050043|Daam2|76441|dishevelled associated activator of morphogenesis 2	NM_001008231|Daam2|76441|dishevelled associated activator of morphogenesis 2	AY426536|Daam2|76441|dishevelled associated activator of morphogenesis 2
mm9_v1_chr3_+_95466898_95466910	0.403662	NANOG.p2	
mm9_v1_chr5_-_135489006_135489022	0.40217	NANOG.p2	AK008014|2010001M06Rik|69812|RIKEN cDNA 2010001M06 gene
mm9_v1_chr15_-_44259378_44259454	0.399904	NANOG.p2	AK167855|Nudcd1|67429|NudC domain containing 1	AK168122|Nudcd1|67429|NudC domain containing 1	AK029339|Nudcd1|67429|NudC domain containing 1	BC031583|Nudcd1|67429|NudC domain containing 1	AK077673|Nudcd1|67429|NudC domain containing 1	AK083587|Nudcd1|67429|NudC domain containing 1
mm9_v1_chr2_+_70312979_70313222	0.396864	NANOG.p2	AK036234|Sp5|64406|trans-acting transcription factor 5	NM_022435|Sp5|64406|trans-acting transcription factor 5	BC116691|Sp5|64406|trans-acting transcription factor 5	BC117505|Sp5|64406|trans-acting transcription factor 5	AF279479|Sp5|64406|trans-acting transcription factor 5
mm9_v1_chr7_-_106289616_106289631	0.394996	NANOG.p2	BC034176|Uvrag|78610|UV radiation resistance associated gene	AK020590|Uvrag|78610|UV radiation resistance associated gene	AK043084|Uvrag|78610|UV radiation resistance associated gene	AK165185|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr1_+_40522396_40522520	0.393407	NANOG.p2	AK089237|Il18r1|16182|interleukin 18 receptor 1	NM_001161842|Il18r1|16182|interleukin 18 receptor 1	AK170705|Il18r1|16182|interleukin 18 receptor 1	NM_001161843|Il18r1|16182|interleukin 18 receptor 1	BC023240|Il18r1|16182|interleukin 18 receptor 1
mm9_v1_chr7_-_106289639_106289648	0.393264	NANOG.p2	AK165015|Uvrag|78610|UV radiation resistance associated gene	AK078085|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr8_+_124474484_124474529	0.390797	NANOG.p2	BC021650|Banp|53325|BTG3 associated nuclear protein	BC022168|Banp|53325|BTG3 associated nuclear protein	AK154088|Banp|53325|BTG3 associated nuclear protein
mm9_v1_chr11_-_51799215_51799347	0.389847	NANOG.p2	AK190260|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)
mm9_v1_chr1_+_111880313_111880391	0.388985	NANOG.p2	AK034096|Cdh7|241201|cadherin 7, type 2	NM_172853|Cdh7|241201|cadherin 7, type 2	AK137369|Cdh7|241201|cadherin 7, type 2
mm9_v1_chr5_-_92483744_92484066	0.387829	NANOG.p2	AK169571|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK220349|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr1_+_155756310_155756313	0.387597	NANOG.p2	AK146463|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK158643|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK159888|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK152497|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)
mm9_v1_chr12_+_103366928_103366945	0.385581	NANOG.p2	AK044368|Slc24a4|238384|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	AK044239|Slc24a4|238384|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm9_v1_chr5_-_84846348_84846408	0.384237	NANOG.p2	BC057401|Epha5|13839|Eph receptor A5	AK133698|Epha5|13839|Eph receptor A5	AK034289|Epha5|13839|Eph receptor A5	AK049740|Epha5|13839|Eph receptor A5	NM_007937|Epha5|13839|Eph receptor A5
mm9_v1_chr15_+_32107043_32107046	0.383811	NANOG.p2	BC111811|Tas2r119|57254|taste receptor, type 2, member 119	BC128079|Tas2r119|57254|taste receptor, type 2, member 119	BC152359|Tas2r119|57254|taste receptor, type 2, member 119	NM_020503|Tas2r119|57254|taste receptor, type 2, member 119	BC128078|Tas2r119|57254|taste receptor, type 2, member 119
mm9_v1_chr2_-_34610751_34610751	0.381876	NANOG.p2	BC060123|Gapvd1|66691|GTPase activating protein and VPS9 domains 1	NM_025709|Gapvd1|66691|GTPase activating protein and VPS9 domains 1
mm9_v1_chr17_+_18158696_18158700	0.380701	NANOG.p2	BC115535|Fpr-rs4|14291|formyl peptide receptor, related sequence 4	NM_008041|Fpr-rs4|14291|formyl peptide receptor, related sequence 4	BC115534|Fpr-rs4|14291|formyl peptide receptor, related sequence 4
mm9_v1_chr9_-_40153864_40153891	0.380245	NANOG.p2	BC070451|Gramd1b|235283|GRAM domain containing 1B
mm9_v1_chr3_+_90404135_90404166	0.378995	NANOG.p2	AK133717|S100a3|20197|S100 calcium binding protein A3	AF004941|S100a3|20197|S100 calcium binding protein A3	NM_011310|S100a3|20197|S100 calcium binding protein A3	BC099893|S100a3|20197|S100 calcium binding protein A3	BC100690|S100a3|20197|S100 calcium binding protein A3	BC100696|S100a3|20197|S100 calcium binding protein A3	BC100697|S100a3|20197|S100 calcium binding protein A3	AK161105|S100a3|20197|S100 calcium binding protein A3
mm9_v1_chr9_+_98390955_98390986	0.378446	NANOG.p2	NM_009034|Rbp2|19660|retinol binding protein 2, cellular	AK003312|Rbp2|19660|retinol binding protein 2, cellular	X74154|Rbp2|19660|retinol binding protein 2, cellular	BC125551|Rbp2|19660|retinol binding protein 2, cellular	BC125553|Rbp2|19660|retinol binding protein 2, cellular
mm9_v1_chrX_+_104344792_104344792	0.377781	NANOG.p2	NM_001122595|A630033H20Rik|213438|RIKEN cDNA A630033H20 gene
mm9_v1_chr15_+_76098518_76098558	0.376751	NANOG.p2	AB032199|Spatc1|74281|spermatogenesis and centriole associated 1	AK006994|Spatc1|74281|spermatogenesis and centriole associated 1	NM_028852|Spatc1|74281|spermatogenesis and centriole associated 1	BC116725|Spatc1|74281|spermatogenesis and centriole associated 1	BC118509|Spatc1|74281|spermatogenesis and centriole associated 1
mm9_v1_chr2_+_167340686_167340879	0.37551	NANOG.p2	BC019989|Rnf114|81018|ring finger protein 114	AK216194|Rnf114|81018|ring finger protein 114	AK003584|Rnf114|81018|ring finger protein 114
mm9_v1_chr13_-_76081142_76081219	0.373735	NANOG.p2	AK139158|Rhobtb3|73296|Rho-related BTB domain containing 3	AK020938|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr6_-_89890500_89890500	0.373674	NANOG.p2	NM_011684|Vmn1r45|22297|vomeronasal 1 receptor 45
mm9_v1_chr14_+_66963139_66963219	0.372341	NANOG.p2	BC014707|Stmn4|56471|stathmin-like 4	BC046752|Stmn4|56471|stathmin-like 4	NM_019675|Stmn4|56471|stathmin-like 4
mm9_v1_chr1_+_165978346_165978413	0.372027	NANOG.p2	AK153623|Sele|20339|selectin, endothelial cell	M87862|Sele|20339|selectin, endothelial cell	NM_011345|Sele|20339|selectin, endothelial cell	BC119083|Sele|20339|selectin, endothelial cell	BC120795|Sele|20339|selectin, endothelial cell
mm9_v1_chr11_+_96143218_96143218	0.371044	NANOG.p2	NM_010461|Hoxb8|15416|homeobox B8	X13721|Hoxb8|15416|homeobox B8
mm9_v1_chr19_+_58586482_58586511	0.369388	NANOG.p2	AK005864|1700011F14Rik|75645|RIKEN cDNA 1700011F14 gene	NM_029372|1700011F14Rik|75645|RIKEN cDNA 1700011F14 gene	BC049707|1700011F14Rik|75645|RIKEN cDNA 1700011F14 gene
mm9_v1_chr18_-_38443954_38444055	0.367616	NANOG.p2	BC127076|Pcdh12|53601|protocadherin 12	Y08715|Pcdh12|53601|protocadherin 12	AK048100|Pcdh12|53601|protocadherin 12	NM_017378|Pcdh12|53601|protocadherin 12	AK028374|Pcdh12|53601|protocadherin 12
mm9_v1_chr11_+_79845841_79845980	0.36533	NANOG.p2	AK076010|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)
mm9_v1_chr12_+_54349663_54349663	0.364615	NANOG.p2	AF173871|Npas3|27386|neuronal PAS domain protein 3	BC120885|Npas3|27386|neuronal PAS domain protein 3	BC148199|Npas3|27386|neuronal PAS domain protein 3	NM_013780|Npas3|27386|neuronal PAS domain protein 3
mm9_v1_chr18_+_37133455_37133703	0.362509	NANOG.p2	BC080863|Pcdha7|12939|protocadherin alpha 7	AY013765|Pcdha7|12939|protocadherin alpha 7	NM_009957|Pcdha7|12939|protocadherin alpha 7	AB008179|Pcdha7|12939|protocadherin alpha 7	EU854476|Pcdha7|12939|protocadherin alpha 7
mm9_v1_chr15_-_44259348_44259361	0.361631	NANOG.p2	
mm9_v1_chr2_-_125971986_125971986	0.359612	NANOG.p2	NM_029455|4930525F21Rik|75823|RIKEN cDNA 4930525F21 gene
mm9_v1_chr6_-_130143018_130143129	0.358482	NANOG.p2	BC116376|Klra6|16637|killer cell lectin-like receptor, subfamily A, member 6	BC131790|Klra5|16636|killer cell lectin-like receptor, subfamily A, member 5	AF237686|Klra9|16640|killer cell lectin-like receptor subfamily A, member 9	NM_010651|Klra9|16640|killer cell lectin-like receptor subfamily A, member 9	U49865|Klra9|16640|killer cell lectin-like receptor subfamily A, member 9	U49866|Klra9|16640|killer cell lectin-like receptor subfamily A, member 9	U49867|Klra9|16640|killer cell lectin-like receptor subfamily A, member 9
mm9_v1_chrX_+_104344953_104344955	0.354932	NANOG.p2	NM_175442|A630033H20Rik|213438|RIKEN cDNA A630033H20 gene	AK041740|A630033H20Rik|213438|RIKEN cDNA A630033H20 gene
mm9_v1_chr16_-_45724422_45724643	0.354595	NANOG.p2	BC043027|Tagln3|56370|transgelin 3	AB031291|Tagln3|56370|transgelin 3	AK013484|Tagln3|56370|transgelin 3	BC055338|Tagln3|56370|transgelin 3	NM_019754|Tagln3|56370|transgelin 3
mm9_v1_chr2_-_168592528_168592700	0.352515	NANOG.p2	AY463371|Sall4|99377|sal-like 4 (Drosophila)	AY463372|Sall4|99377|sal-like 4 (Drosophila)	AY463373|Sall4|99377|sal-like 4 (Drosophila)	AK049188|Sall4|99377|sal-like 4 (Drosophila)	AK145388|Sall4|99377|sal-like 4 (Drosophila)	BC099928|Sall4|99377|sal-like 4 (Drosophila)	BC053716|Sall4|99377|sal-like 4 (Drosophila)	NM_175303|Sall4|99377|sal-like 4 (Drosophila)	NM_201395|Sall4|99377|sal-like 4 (Drosophila)	NM_201396|Sall4|99377|sal-like 4 (Drosophila)
mm9_v1_chr6_+_64992861_64992872	0.34977	NANOG.p2	AK147884|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm9_v1_chr12_-_82480450_82480472	0.348755	NANOG.p2	BC141094|Gm4787|214321|predicted gene 4787	NM_001038995|Gm4787|214321|predicted gene 4787
mm9_v1_chr4_-_140953962_140954110	0.347648	NANOG.p2	AY373832|Clcnka|12733|chloride channel Ka	NM_001146307|Clcnka|12733|chloride channel Ka	AF124848|Clcnka|12733|chloride channel Ka
mm9_v1_chr19_+_8829988_8830019	0.34665	NANOG.p2	
mm9_v1_chr5_-_141124884_141125029	0.344054	NANOG.p2	AK052340|Ttyh3|78339|tweety homolog 3 (Drosophila)	BC059083|Ttyh3|78339|tweety homolog 3 (Drosophila)	BC062917|Ttyh3|78339|tweety homolog 3 (Drosophila)	NM_175274|Ttyh3|78339|tweety homolog 3 (Drosophila)
mm9_v1_chr2_-_25089722_25089726	0.343466	NANOG.p2	AB054999|Slc34a3|142681|solute carrier family 34 (sodium phosphate), member 3	NM_080854|Slc34a3|142681|solute carrier family 34 (sodium phosphate), member 3
mm9_v1_chr16_-_19983049_19983121	0.342936	NANOG.p2	AY350736|Klhl6|239743|kelch-like 6 (Drosophila)	BC100568|Klhl6|239743|kelch-like 6 (Drosophila)	NM_183390|Klhl6|239743|kelch-like 6 (Drosophila)
mm9_v1_chr13_-_38694739_38694840	0.338611	NANOG.p2	
mm9_v1_chr2_-_26284968_26285031	0.337966	NANOG.p2	AK122242|Sec16a|227648|SEC16 homolog A (S. cerevisiae)
mm9_v1_chr12_-_58647074_58647107	0.331619	NANOG.p2	BC096524|Foxa1|15375|forkhead box A1	NM_008259|Foxa1|15375|forkhead box A1
mm9_v1_chr18_+_61799306_61799327	0.328467	NANOG.p2	AK143260|LOC545261|545261|hypothetical protein LOC545261
mm9_v1_chr11_-_120092784_120092898	0.327511	NANOG.p2	AK034741|2900052L18Rik|76835|RIKEN cDNA 2900052L18 gene	AK162948|2900052L18Rik|76835|RIKEN cDNA 2900052L18 gene	AK013668|2900052L18Rik|76835|RIKEN cDNA 2900052L18 gene
mm9_v1_chr3_-_108692732_108692925	0.325382	NANOG.p2	BC111898|Fndc7|320181|fibronectin type III domain containing 7	BC113188|Fndc7|320181|fibronectin type III domain containing 7	AK053989|Fndc7|320181|fibronectin type III domain containing 7	AK054241|Fndc7|320181|fibronectin type III domain containing 7	NM_001165965|Fndc7|320181|fibronectin type III domain containing 7	NM_177091|Fndc7|320181|fibronectin type III domain containing 7
mm9_v1_chr1_+_129702056_129702170	0.325187	NANOG.p2	AK033697|Ccnt2|72949|cyclin T2
mm9_v1_chr8_+_96561135_96561146	0.324917	NANOG.p2	AK049824|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	BC040267|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1
mm9_v1_chr11_+_102254816_102254873	0.324665	NANOG.p2	BC046319|Rundc3a|51799|RUN domain containing 3A
mm9_v1_chr3_-_94812818_94812845	0.324249	NANOG.p2	BC039950|Zfp687|78266|zinc finger protein 687	BC036979|Zfp687|78266|zinc finger protein 687
mm9_v1_chr19_-_56622502_56622559	0.324063	NANOG.p2	NM_018831|Dclre1a|55947|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm9_v1_chr3_-_108229641_108229684	0.323898	NANOG.p2	
mm9_v1_chr16_-_88962877_88963117	0.323781	NANOG.p2	AF345296|Krtap16-6|170655|keratin associated protein 16-6	BC107303|Krtap16-10|71369|keratin associated protein 16-10	BC107304|Krtap16-10|71369|keratin associated protein 16-10	BC119504|Krtap16-10|71369|keratin associated protein 16-10	BC127231|Krtap16-10|71369|keratin associated protein 16-10	BC127232|Krtap16-10|71369|keratin associated protein 16-10	BC132658|Krtap16-10|71369|keratin associated protein 16-10	BC132660|Krtap16-10|71369|keratin associated protein 16-10	AK017265|Krtap16-10|71369|keratin associated protein 16-10	NM_183296|Krtap16-10|71369|keratin associated protein 16-10
mm9_v1_chrX_+_148237785_148237953	0.321391	NANOG.p2	AK163416|Huwe1|59026|HECT, UBA and WWE domain containing 1	NM_021523|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK049460|Huwe1|59026|HECT, UBA and WWE domain containing 1	DQ097265|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK045183|Huwe1|59026|HECT, UBA and WWE domain containing 1	AY772010|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK165140|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK165648|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK031374|Huwe1|59026|HECT, UBA and WWE domain containing 1
mm9_v1_chr10_-_51351236_51351263	0.320356	NANOG.p2	AY735399|Gprc6a|210198|G protein-coupled receptor, family C, group 6, member A	AY735400|Gprc6a|210198|G protein-coupled receptor, family C, group 6, member A	AY735401|Gprc6a|210198|G protein-coupled receptor, family C, group 6, member A	AY101365|Gprc6a|210198|G protein-coupled receptor, family C, group 6, member A	BC108998|Gprc6a|210198|G protein-coupled receptor, family C, group 6, member A	NM_153071|Gprc6a|210198|G protein-coupled receptor, family C, group 6, member A
mm9_v1_chr8_-_119606348_119606348	0.319621	NANOG.p2	AY164484|Pkd1l2|76645|polycystic kidney disease 1 like 2	NM_029686|Pkd1l2|76645|polycystic kidney disease 1 like 2
mm9_v1_chr7_+_97574821_97574821	0.31839	NANOG.p2	NM_027298|Ccdc89|70054|coiled-coil domain containing 89
mm9_v1_chr7_-_49314350_49314350	0.316877	NANOG.p2	NM_001105056|Vmn2r59|628444|vomeronasal 2, receptor 59
mm9_v1_chr6_-_57340560_57340659	0.316518	NANOG.p2	NM_134181|Vmn1r18|171199|vomeronasal 1 receptor 18	BC132061|Vmn1r18|171199|vomeronasal 1 receptor 18	BC138409|Vmn1r18|171199|vomeronasal 1 receptor 18
mm9_v1_chr3_+_105673775_105673824	0.314949	NANOG.p2	BC100416|Adora3|11542|adenosine A3 receptor	NM_001174169|Adora3|11542|adenosine A3 receptor	AK016304|Adora3|11542|adenosine A3 receptor	AK005581|Adora3|11542|adenosine A3 receptor	NM_027025|Adora3|11542|adenosine A3 receptor
mm9_v1_chr8_+_4238780_4238837	0.308842	NANOG.p2	AK165184|Map2k7|26400|mitogen-activated protein kinase kinase 7	BC070467|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF060944|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF060945|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF060946|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF060947|Map2k7|26400|mitogen-activated protein kinase kinase 7	AK031137|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chr7_-_115210309_115210309	0.307696	NANOG.p2	NM_020291|Olfr480|56861|olfactory receptor 480
mm9_v1_chr15_-_79359998_79360114	0.30664	NANOG.p2	AK079294|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	AK011338|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	AK079442|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	AK164451|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
mm9_v1_chr10_-_116585527_116585608	0.304966	NANOG.p2	BC043109|Frs2|327826|fibroblast growth factor receptor substrate 2	NM_177798|Frs2|327826|fibroblast growth factor receptor substrate 2	AK028813|Frs2|327826|fibroblast growth factor receptor substrate 2	AK163442|Frs2|327826|fibroblast growth factor receptor substrate 2	BC055334|Frs2|327826|fibroblast growth factor receptor substrate 2	AK138144|Frs2|327826|fibroblast growth factor receptor substrate 2
mm9_v1_chr17_+_5975585_5975739	0.303237	NANOG.p2	AK163512|Synj2|20975|synaptojanin 2	NM_001113351|Synj2|20975|synaptojanin 2	NM_011523|Synj2|20975|synaptojanin 2	AF041862|Synj2|20975|synaptojanin 2	BC060214|Synj2|20975|synaptojanin 2
mm9_v1_chr19_+_9052495_9052648	0.299752	NANOG.p2	AK011087|Eef1g|67160|eukaryotic translation elongation factor 1 gamma
mm9_v1_chr2_-_6642489_6642726	0.29973	NANOG.p2	AK137555|Celf2|14007|CUGBP, Elav-like family member 2	AK151818|Celf2|14007|CUGBP, Elav-like family member 2	AK152628|Celf2|14007|CUGBP, Elav-like family member 2	AK153267|Celf2|14007|CUGBP, Elav-like family member 2	AK162651|Celf2|14007|CUGBP, Elav-like family member 2	AK172648|Celf2|14007|CUGBP, Elav-like family member 2	AK169542|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr17_-_65944300_65944335	0.299114	NANOG.p2	AK149040|Vapa|30960|vesicle-associated membrane protein, associated protein A
mm9_v1_chr19_-_41289045_41289143	0.298335	NANOG.p2	AK004050|Tm9sf3|107358|transmembrane 9 superfamily member 3
mm9_v1_chrX_+_51028002_51028007	0.298192	NANOG.p2	AK015678|4930502E18Rik|75013|RIKEN cDNA 4930502E18 gene	BC115663|4930502E18Rik|75013|RIKEN cDNA 4930502E18 gene	BC115664|4930502E18Rik|75013|RIKEN cDNA 4930502E18 gene	NM_029142|4930502E18Rik|75013|RIKEN cDNA 4930502E18 gene
mm9_v1_chr5_-_117565990_117566025	0.297955	NANOG.p2	NM_001122666|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	NM_178622|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)
mm9_v1_chr6_+_53523365_53523387	0.297181	NANOG.p2	AK052230|Creb5|231991|cAMP responsive element binding protein 5	AK052451|Creb5|231991|cAMP responsive element binding protein 5	AK154148|Creb5|231991|cAMP responsive element binding protein 5	NM_172728|Creb5|231991|cAMP responsive element binding protein 5	AK170128|Creb5|231991|cAMP responsive element binding protein 5	AK155537|Creb5|231991|cAMP responsive element binding protein 5	BC098487|Creb5|231991|cAMP responsive element binding protein 5
mm9_v1_chr7_+_51036423_51036448	0.294842	NANOG.p2	NM_133712|Klk10|69540|kallikrein related-peptidase 10	AK009000|Klk10|69540|kallikrein related-peptidase 10	BC002100|Klk10|69540|kallikrein related-peptidase 10
mm9_v1_chr6_+_64992810_64992853	0.294615	NANOG.p2	AK134442|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	AK011724|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	AK122454|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm9_v1_chr13_+_119503505_119503505	0.294054	NANOG.p2	AK045267|Fgf10|14165|fibroblast growth factor 10	NM_008002|Fgf10|14165|fibroblast growth factor 10
mm9_v1_chr16_-_88896693_88896694	0.28416	NANOG.p2	NM_010676|Krtap8-2|16704|keratin associated protein 8-2	D86422|Krtap8-2|16704|keratin associated protein 8-2
mm9_v1_chr1_+_158769044_158769153	0.27946	NANOG.p2	AK142319|Angptl1|72713|angiopoietin-like 1	AK012888|Angptl1|72713|angiopoietin-like 1	BC082563|Angptl1|72713|angiopoietin-like 1	NM_028333|Angptl1|72713|angiopoietin-like 1
mm9_v1_chrX_-_7182450_7182545	0.279294	NANOG.p2	BC011195|Ccdc22|54638|coiled-coil domain containing 22	AK010536|Ccdc22|54638|coiled-coil domain containing 22	AF229637|Ccdc22|54638|coiled-coil domain containing 22	AK039573|Ccdc22|54638|coiled-coil domain containing 22	NM_138603|Ccdc22|54638|coiled-coil domain containing 22
mm9_v1_chr17_-_90487479_90487653	0.277922	NANOG.p2	AK032032|Nrxn1|18189|neurexin I
mm9_v1_chr18_-_20273110_20273273	0.276802	NANOG.p2	BC109161|Dsc1|13505|desmocollin 1	BC109162|Dsc1|13505|desmocollin 1	AK036893|Dsc1|13505|desmocollin 1	AK081826|Dsc1|13505|desmocollin 1	X97986|Dsc1|13505|desmocollin 1	AK079441|Dsc1|13505|desmocollin 1	NM_013504|Dsc1|13505|desmocollin 1
mm9_v1_chr3_-_141645214_141645214	0.276475	NANOG.p2	BC065143|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B	NM_007560|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B
mm9_v1_chr6_+_70557402_70557430	0.275338	NANOG.p2	
mm9_v1_chr17_+_18561067_18561067	0.27514	NANOG.p2	NM_001102581|Vmn2r95|328759|vomeronasal 2, receptor 95
mm9_v1_chr6_+_97941776_97941914	0.27409	NANOG.p2	NM_008601|Mitf|17342|microphthalmia-associated transcription factor	U19875|Mitf|17342|microphthalmia-associated transcription factor	Z23066|Mitf|17342|microphthalmia-associated transcription factor	BC108976|Mitf|17342|microphthalmia-associated transcription factor	BC108977|Mitf|17342|microphthalmia-associated transcription factor	AB221657|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr7_-_106289651_106289675	0.273675	NANOG.p2	NM_178635|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr8_+_24780132_24780145	0.27339	NANOG.p2	AK140391|Zmat4|320158|zinc finger, matrin type 4	AK140413|Zmat4|320158|zinc finger, matrin type 4	NM_177086|Zmat4|320158|zinc finger, matrin type 4	AK036254|Zmat4|320158|zinc finger, matrin type 4	AK134793|Zmat4|320158|zinc finger, matrin type 4	BC065110|Zmat4|320158|zinc finger, matrin type 4	BC079657|Zmat4|320158|zinc finger, matrin type 4
mm9_v1_chr15_-_41700964_41701265	0.269576	NANOG.p2	AK138943|Abra|223513|actin-binding Rho activating protein	AK045186|Abra|223513|actin-binding Rho activating protein	AF504061|Abra|223513|actin-binding Rho activating protein	BC119198|Abra|223513|actin-binding Rho activating protein	BC120842|Abra|223513|actin-binding Rho activating protein	AK081696|Abra|223513|actin-binding Rho activating protein	NM_175456|Abra|223513|actin-binding Rho activating protein
mm9_v1_chr7_-_34977928_34978057	0.269444	NANOG.p2	BC025090|Pdcd2l|68079|programmed cell death 2-like	BC038524|Pdcd2l|68079|programmed cell death 2-like
mm9_v1_chr1_-_73062445_73062472	0.267251	NANOG.p2	X12521|Tnp1|21958|transition protein 1	AK006495|Tnp1|21958|transition protein 1	BC061170|Tnp1|21958|transition protein 1	BC048494|Tnp1|21958|transition protein 1	NM_009407|Tnp1|21958|transition protein 1
mm9_v1_chr14_+_45607785_45607874	0.263605	NANOG.p2	NM_008964|Ptger2|19217|prostaglandin E receptor 2 (subtype EP2)	AK036531|Ptger2|19217|prostaglandin E receptor 2 (subtype EP2)	AK086904|Ptger2|19217|prostaglandin E receptor 2 (subtype EP2)
mm9_v1_chr7_-_4965804_4965854	0.263256	NANOG.p2	BC138231|Fiz1|23877|Flt3 interacting zinc finger protein 1	BC138232|Fiz1|23877|Flt3 interacting zinc finger protein 1	BC145207|Fiz1|23877|Flt3 interacting zinc finger protein 1	AF126747|Fiz1|23877|Flt3 interacting zinc finger protein 1	BC006633|Fiz1|23877|Flt3 interacting zinc finger protein 1	NM_011813|Fiz1|23877|Flt3 interacting zinc finger protein 1
mm9_v1_chr8_+_73222913_73223172	0.262497	NANOG.p2	X15358|Jund|16478|Jun proto-oncogene related gene d
mm9_v1_chr7_-_110926856_110926856	0.25957	NANOG.p2	NM_013620|Olfr68|18369|olfactory receptor 68
mm9_v1_chr16_+_38362258_38362337	0.259474	NANOG.p2	NM_001081984|Popdc2|64082|popeye domain containing 2	BC064005|Popdc2|64082|popeye domain containing 2	NM_022318|Popdc2|64082|popeye domain containing 2	AK084713|Popdc2|64082|popeye domain containing 2	AF204175|Popdc2|64082|popeye domain containing 2
mm9_v1_chr6_+_127022919_127023047	0.257001	NANOG.p2	AK155687|Fgf23|64654|fibroblast growth factor 23	NM_022657|Fgf23|64654|fibroblast growth factor 23	AF263536|Fgf23|64654|fibroblast growth factor 23	BC120605|Fgf23|64654|fibroblast growth factor 23	AB037889|Fgf23|64654|fibroblast growth factor 23
mm9_v1_chr7_-_106289567_106289603	0.255948	NANOG.p2	AK030814|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr16_-_64786146_64786199	0.252611	NANOG.p2	BC068018|Zfp654|72020|zinc finger protein 654	NM_028059|Zfp654|72020|zinc finger protein 654	AK005508|Zfp654|72020|zinc finger protein 654
mm9_v1_chr11_-_102080155_102080242	0.252151	NANOG.p2	AK156008|Hdac5|15184|histone deacetylase 5	AK157159|Hdac5|15184|histone deacetylase 5
mm9_v1_chr9_-_42208011_42208011	0.252108	NANOG.p2	NM_009347|Tecta|21683|tectorin alpha	X99805|Tecta|21683|tectorin alpha
mm9_v1_chr19_+_8692485_8692668	0.251438	NANOG.p2	NM_008766|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	BC021647|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	U52842|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	AK035971|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6
mm9_v1_chr3_-_51129908_51129958	0.247705	NANOG.p2	AF256216|Elf2|69257|E74-like factor 2	AF256217|Elf2|69257|E74-like factor 2	NM_023502|Elf2|69257|E74-like factor 2	BC092057|Elf2|69257|E74-like factor 2
mm9_v1_chr16_+_89031943_89031945	0.247246	NANOG.p2	BC107313|Krtap6-1|16700|keratin associated protein 6-1	BC107314|Krtap6-1|16700|keratin associated protein 6-1	BC127045|Krtap6-1|16700|keratin associated protein 6-1	BC127046|Krtap6-1|16700|keratin associated protein 6-1	D86420|Krtap6-1|16700|keratin associated protein 6-1	NM_010672|Krtap6-1|16700|keratin associated protein 6-1	BC114404|Krtap6-1|16700|keratin associated protein 6-1	BC114532|Krtap6-1|16700|keratin associated protein 6-1
mm9_v1_chr13_-_53568111_53568148	0.244142	NANOG.p2	AK131974|Msx2|17702|homeobox, msh-like 2	BC141132|Msx2|17702|homeobox, msh-like 2	AK133846|Msx2|17702|homeobox, msh-like 2	NM_013601|Msx2|17702|homeobox, msh-like 2
mm9_v1_chr14_-_69151731_69151797	0.243134	NANOG.p2	AF013107|Adam7|11500|a disintegrin and metallopeptidase domain 7	AK136692|Adam7|11500|a disintegrin and metallopeptidase domain 7	NM_007402|Adam7|11500|a disintegrin and metallopeptidase domain 7	AK020312|Adam7|11500|a disintegrin and metallopeptidase domain 7
mm9_v1_chr9_+_48863746_48863781	0.242132	NANOG.p2	AK167937|Zw10|26951|ZW10 homolog (Drosophila), centromere/kinetochore protein
mm9_v1_chr3_+_89225539_89225564	0.240211	NANOG.p2	NM_001113331|Shc1|20416|src homology 2 domain-containing transforming protein C1	AK155158|Shc1|20416|src homology 2 domain-containing transforming protein C1
mm9_v1_chr17_+_70871444_70871503	0.233726	NANOG.p2	NM_001128180|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK161941|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK163689|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr8_-_71601126_71601131	0.233403	NANOG.p2	AK076433|Slc18a1|110877|solute carrier family 18 (vesicular monoamine), member 1	AK144034|Slc18a1|110877|solute carrier family 18 (vesicular monoamine), member 1
mm9_v1_chr2_-_38569891_38570061	0.233149	NANOG.p2	AF511594|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	BC110476|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	BC110477|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	AK144376|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	AK156911|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	AK134378|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	NM_139051|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1
mm9_v1_chr19_-_56622636_56622751	0.232583	NANOG.p2	AK029794|Dclre1a|55947|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)	BC076617|Dclre1a|55947|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm9_v1_chr6_+_70676803_70676846	0.227973	NANOG.p2	
mm9_v1_chr5_-_97885939_97886039	0.226946	NANOG.p2	AK075761|Gk2|14626|glycerol kinase 2	BC061147|Gk2|14626|glycerol kinase 2	AF117734|Gk2|14626|glycerol kinase 2	NM_010294|Gk2|14626|glycerol kinase 2	BC050764|Gk2|14626|glycerol kinase 2
mm9_v1_chr15_+_16707855_16707855	0.226635	NANOG.p2	NM_009869|Cdh9|12565|cadherin 9
mm9_v1_chr17_+_27693518_27693641	0.224186	NANOG.p2	NM_001025427|Hmga1|15361|high mobility group AT-hook 1	NM_001039356|Hmga1|15361|high mobility group AT-hook 1	NM_001166535|Hmga1|15361|high mobility group AT-hook 1	NM_001166536|Hmga1|15361|high mobility group AT-hook 1	NM_001166539|Hmga1|15361|high mobility group AT-hook 1	NM_001166540|Hmga1|15361|high mobility group AT-hook 1	NM_001166541|Hmga1|15361|high mobility group AT-hook 1	NM_001166542|Hmga1|15361|high mobility group AT-hook 1	NM_001166543|Hmga1|15361|high mobility group AT-hook 1	NM_001166544|Hmga1|15361|high mobility group AT-hook 1	NM_001166545|Hmga1|15361|high mobility group AT-hook 1	NM_001166546|Hmga1|15361|high mobility group AT-hook 1	NM_001166537|Hmga1|15361|high mobility group AT-hook 1	NM_016660|Hmga1|15361|high mobility group AT-hook 1	AK171334|Hmga1|15361|high mobility group AT-hook 1	AK155661|Hmga1|15361|high mobility group AT-hook 1	BC013455|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	AK010617|Hmga1|15361|high mobility group AT-hook 1	AK169783|Hmga1|15361|high mobility group AT-hook 1	NM_001166476|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	NM_001166477|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	AK154957|Hmga1|15361|high mobility group AT-hook 1	AK160036|Hmga1|15361|high mobility group AT-hook 1	BC008125|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	BC093496|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1
mm9_v1_chr4_+_134420419_134420535	0.223245	NANOG.p2	BC145805|Rhd|19746|Rh blood group, D antigen	NM_011270|Rhd|19746|Rh blood group, D antigen	AF057524|Rhd|19746|Rh blood group, D antigen	AK089642|Rhd|19746|Rh blood group, D antigen	AF069311|Rhd|19746|Rh blood group, D antigen	AK079335|Rhd|19746|Rh blood group, D antigen	AK171641|Rhd|19746|Rh blood group, D antigen	AB015189|Rhd|19746|Rh blood group, D antigen	AB015190|Rhd|19746|Rh blood group, D antigen	AF047827|Rhd|19746|Rh blood group, D antigen	AK157850|Rhd|19746|Rh blood group, D antigen	AF012430|Rhd|19746|Rh blood group, D antigen
mm9_v1_chr2_+_155970003_155970079	0.223238	NANOG.p2	AY028425|Romo1|67067|reactive oxygen species modulator 1	NM_025946|Romo1|67067|reactive oxygen species modulator 1
mm9_v1_chr3_+_37247574_37247574	0.223063	NANOG.p2	NM_008006|Fgf2|14173|fibroblast growth factor 2
mm9_v1_chr1_-_10710010_10710025	0.220573	NANOG.p2	BC119559|Cpa6|329093|carboxypeptidase A6	BC119560|Cpa6|329093|carboxypeptidase A6	AY773477|Cpa6|329093|carboxypeptidase A6	NM_177834|Cpa6|329093|carboxypeptidase A6	AK078883|Cpa6|329093|carboxypeptidase A6
mm9_v1_chr4_-_96220294_96220351	0.218368	NANOG.p2	AK045421|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	BC050832|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK033614|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	NM_010008|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK084025|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6
mm9_v1_chr12_-_40763924_40763965	0.21817	NANOG.p2	BC029234|Arl4a|11861|ADP-ribosylation factor-like 4A	BC003725|Arl4a|11861|ADP-ribosylation factor-like 4A	AK168618|Arl4a|11861|ADP-ribosylation factor-like 4A	AK048606|Arl4a|11861|ADP-ribosylation factor-like 4A	AK137751|Arl4a|11861|ADP-ribosylation factor-like 4A	NM_007487|Arl4a|11861|ADP-ribosylation factor-like 4A
mm9_v1_chr3_-_33743185_33743231	0.216207	NANOG.p2	AK029948|Ccdc39|51938|coiled-coil domain containing 39	BC138917|Ccdc39|51938|coiled-coil domain containing 39	BC138920|Ccdc39|51938|coiled-coil domain containing 39	AK030087|Ccdc39|51938|coiled-coil domain containing 39	AK163953|Ccdc39|51938|coiled-coil domain containing 39	AK014839|Ccdc39|51938|coiled-coil domain containing 39	AK162849|Ccdc39|51938|coiled-coil domain containing 39	NM_026222|Ccdc39|51938|coiled-coil domain containing 39
mm9_v1_chr10_-_85474581_85474639	0.210919	NANOG.p2	BC112376|Bpil2|270757|bactericidal/permeability-increasing protein-like 2	AK028764|Bpil2|270757|bactericidal/permeability-increasing protein-like 2	NM_177772|Bpil2|270757|bactericidal/permeability-increasing protein-like 2	AK132518|Bpil2|270757|bactericidal/permeability-increasing protein-like 2
mm9_v1_chr9_+_86910371_86910467	0.210803	NANOG.p2	AB212223|Ripply2|382089|ripply2 homolog (zebrafish)	NM_001037907|Ripply2|382089|ripply2 homolog (zebrafish)	AK081203|Ripply2|382089|ripply2 homolog (zebrafish)
mm9_v1_chr17_+_8118823_8118919	0.210494	NANOG.p2	NM_145968|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC030886|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC039780|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC150728|Tagap|72536|T-cell activation Rho GTPase-activating protein
mm9_v1_chr18_-_6516073_6516084	0.210441	NANOG.p2	AK148194|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	AF079765|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	NM_007935|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)
mm9_v1_chr4_-_144376485_144376485	0.207295	NANOG.p2	NM_001126316|Gm438|329993|predicted gene 438
mm9_v1_chr9_+_21420612_21420824	0.206048	NANOG.p2	BC079560|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_001174078|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_001174079|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_011417|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK147285|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK166837|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK160825|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK135308|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK142137|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC061214|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC060229|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC023830|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC032162|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC054056|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC014760|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK051530|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm9_v1_chr19_-_37250472_37250552	0.205335	NANOG.p2	AK147243|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3
mm9_v1_chr1_+_167718811_167718898	0.202423	NANOG.p2	AK138774|Cd247|12503|CD247 antigen	J04967|Cd247|12503|CD247 antigen	NM_001113391|Cd247|12503|CD247 antigen	NM_001113392|Cd247|12503|CD247 antigen	NM_001113393|Cd247|12503|CD247 antigen	NM_001113394|Cd247|12503|CD247 antigen	NM_031162|Cd247|12503|CD247 antigen	AK017904|Cd247|12503|CD247 antigen	AK088087|Cd247|12503|CD247 antigen	L03353|Cd247|12503|CD247 antigen	S51932|Cd247|12503|CD247 antigen	U56258|Cd247|12503|CD247 antigen	X84237|Cd247|12503|CD247 antigen	BC052824|Cd247|12503|CD247 antigen
mm9_v1_chr15_-_94408654_94408675	0.198671	NANOG.p2	
mm9_v1_chr12_+_75002361_75002386	0.197782	NANOG.p2	X95580|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr7_-_53121804_53122050	0.197146	NANOG.p2	AB154244|Grin2d|14814|glutamate receptor, ionotropic, NMDA2D (epsilon 4)	AB154245|Grin2d|14814|glutamate receptor, ionotropic, NMDA2D (epsilon 4)	D12822|Grin2d|14814|glutamate receptor, ionotropic, NMDA2D (epsilon 4)	NM_008172|Grin2d|14814|glutamate receptor, ionotropic, NMDA2D (epsilon 4)
mm9_v1_chr3_+_28162135_28162218	0.194214	NANOG.p2	BC050866|Tnik|665113|TRAF2 and NCK interacting kinase	BC050868|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163007|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163008|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163009|Tnik|665113|TRAF2 and NCK interacting kinase	NM_026910|Tnik|665113|TRAF2 and NCK interacting kinase	AK041777|Tnik|665113|TRAF2 and NCK interacting kinase	AK133568|Tnik|665113|TRAF2 and NCK interacting kinase	AK039113|Tnik|665113|TRAF2 and NCK interacting kinase
mm9_v1_chr19_-_10752469_10752560	0.194075	NANOG.p2	AF240776|Pga5|58803|pepsinogen 5, group I	AK004109|Pga5|58803|pepsinogen 5, group I	AK168924|Pga5|58803|pepsinogen 5, group I	BC119523|Pga5|58803|pepsinogen 5, group I	AK053965|Pga5|58803|pepsinogen 5, group I	NM_021453|Pga5|58803|pepsinogen 5, group I
mm9_v1_chr18_-_75857207_75857349	0.192449	NANOG.p2	BC058104|Ctif|269037|CBP80/20-dependent translation initiation factor	NM_201354|Ctif|269037|CBP80/20-dependent translation initiation factor
mm9_v1_chr16_-_10788722_10788752	0.190042	NANOG.p2	J03494|Tnp2|21959|transition protein 2	BC092529|Tnp2|21959|transition protein 2	NM_013694|Tnp2|21959|transition protein 2	AK005689|Tnp2|21959|transition protein 2
mm9_v1_chr5_-_77543903_77543908	0.185298	NANOG.p2	AK004798|Hopx|74318|HOP homeobox	AK009007|Hopx|74318|HOP homeobox
mm9_v1_chr10_+_79451369_79451426	0.181906	NANOG.p2	BC018482|Cnn2|12798|calponin 2	BC009144|Cnn2|12798|calponin 2	AK189304|Cnn2|12798|calponin 2	BC008181|Cnn2|12798|calponin 2
mm9_v1_chr4_+_119310319_119310342	0.181257	NANOG.p2	AK075814|Guca2a|14915|guanylate cyclase activator 2a (guanylin)	BC012640|Guca2a|14915|guanylate cyclase activator 2a (guanylin)	M95175|Guca2a|14915|guanylate cyclase activator 2a (guanylin)	NM_008190|Guca2a|14915|guanylate cyclase activator 2a (guanylin)	L05516|Guca2a|14915|guanylate cyclase activator 2a (guanylin)
mm9_v1_chrX_+_156278399_156278494	0.180223	NANOG.p2	AK028299|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_001135728|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr18_-_24761954_24762029	0.179786	NANOG.p2	BC055012|Slc39a6|106957|solute carrier family 39 (metal ion transporter), member 6
mm9_v1_chr1_+_75233028_75233040	0.179368	NANOG.p2	AK156083|Dnajb2|56812|DnaJ (Hsp40) homolog, subfamily B, member 2	BC085162|Dnajb2|56812|DnaJ (Hsp40) homolog, subfamily B, member 2
mm9_v1_chr14_-_13178341_13178378	0.179307	NANOG.p2	AK019996|Fezf2|54713|Fez family zinc finger 2	BC055718|Fezf2|54713|Fez family zinc finger 2	NM_080433|Fezf2|54713|Fez family zinc finger 2
mm9_v1_chr3_-_102586596_102586636	0.177969	NANOG.p2	M35719|Tshb|22094|thyroid stimulating hormone, beta subunit	M35720|Tshb|22094|thyroid stimulating hormone, beta subunit	M35721|Tshb|22094|thyroid stimulating hormone, beta subunit	M35723|Tshb|22094|thyroid stimulating hormone, beta subunit	NM_001165939|Tshb|22094|thyroid stimulating hormone, beta subunit	NM_001165940|Tshb|22094|thyroid stimulating hormone, beta subunit	NM_009432|Tshb|22094|thyroid stimulating hormone, beta subunit
mm9_v1_chrX_+_13209894_13209986	0.175678	NANOG.p2	DQ103766|Gpr34|23890|G protein-coupled receptor 34	DQ103767|Gpr34|23890|G protein-coupled receptor 34	NM_011823|Gpr34|23890|G protein-coupled receptor 34	AK033675|Gpr34|23890|G protein-coupled receptor 34	AK039528|Gpr34|23890|G protein-coupled receptor 34	AK039041|Gpr34|23890|G protein-coupled receptor 34	AK140507|Gpr34|23890|G protein-coupled receptor 34
mm9_v1_chr8_-_108092197_108092197	0.175285	NANOG.p2	BC079902|Agrp|11604|agouti related protein	NM_007427|Agrp|11604|agouti related protein
mm9_v1_chr18_-_42356324_42356362	0.174229	NANOG.p2	BC110558|Plac8l1|69401|PLAC8-like 1	BC110559|Plac8l1|69401|PLAC8-like 1	AK006002|Plac8l1|69401|PLAC8-like 1	AK005800|Plac8l1|69401|PLAC8-like 1	NM_027072|Plac8l1|69401|PLAC8-like 1
mm9_v1_chr5_-_143579060_143579087	0.173094	NANOG.p2	BC049818|Tnrc18|231861|trinucleotide repeat containing 18	NM_001122730|Tnrc18|231861|trinucleotide repeat containing 18	NM_178242|Tnrc18|231861|trinucleotide repeat containing 18
mm9_v1_chrX_-_16488889_16488889	0.172952	NANOG.p2	BC090623|Ndp|17986|Norrie disease (pseudoglioma) (human)	NM_010883|Ndp|17986|Norrie disease (pseudoglioma) (human)
mm9_v1_chr7_+_99968402_99968500	0.171062	NANOG.p2	AK017185|Rab30|75985|RAB30, member RAS oncogene family	AB232626|Rab30|75985|RAB30, member RAS oncogene family	AF399756|Rab30|75985|RAB30, member RAS oncogene family
mm9_v1_chr18_-_42900793_42900846	0.170578	NANOG.p2	AF512670|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm9_v1_chr4_+_13678443_13678575	0.16982	NANOG.p2	NM_001111027|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr8_+_47095955_47095964	0.164812	NANOG.p2	BC051150|Lrp2bp|67620|Lrp2 binding protein	NM_026278|Lrp2bp|67620|Lrp2 binding protein	AK007202|Lrp2bp|67620|Lrp2 binding protein	AK015594|Lrp2bp|67620|Lrp2 binding protein
mm9_v1_chr4_-_153531656_153531685	0.164795	NANOG.p2	
mm9_v1_chr4_+_119487105_119487332	0.164631	NANOG.p2	AY454348|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	BC058336|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	NM_010657|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	AY454345|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3
mm9_v1_chr7_+_3596861_3596991	0.162935	NANOG.p2	AK172439|Cnot3|232791|CCR4-NOT transcription complex, subunit 3	NM_146176|Cnot3|232791|CCR4-NOT transcription complex, subunit 3	AK141718|Cnot3|232791|CCR4-NOT transcription complex, subunit 3	AK044755|Cnot3|232791|CCR4-NOT transcription complex, subunit 3	AK031774|Cnot3|232791|CCR4-NOT transcription complex, subunit 3	BC030332|Cnot3|232791|CCR4-NOT transcription complex, subunit 3
mm9_v1_chr12_-_117190935_117191241	0.162569	NANOG.p2	U38853|Igh-VJ558|16061|immunoglobulin heavy chain (J558 family)	AF296431|Igh-VJ558|16061|immunoglobulin heavy chain (J558 family)	AF045497|Ighm|16019|immunoglobulin heavy constant mu
mm9_v1_chr6_+_30561009_30561009	0.160987	NANOG.p2	AF466283|Cpa5|74649|carboxypeptidase A5	AK015256|Cpa5|74649|carboxypeptidase A5	NM_144537|Cpa5|74649|carboxypeptidase A5
mm9_v1_chr6_-_85852526_85852526	0.157634	NANOG.p2	AK006120|1700019G17Rik|75541|RIKEN cDNA 1700019G17 gene	NM_001145895|1700019G17Rik|75541|RIKEN cDNA 1700019G17 gene
mm9_v1_chr4_-_41586992_41587010	0.154585	NANOG.p2	BC021944|Enho|69638|energy homeostasis associated
mm9_v1_chr19_-_8479532_8479600	0.149579	NANOG.p2	BC132146|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	BC132336|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	BC016496|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	BC050265|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	AK052592|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	AK040781|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	AK050438|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	AK080180|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	NM_177002|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	AK057654|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene
mm9_v1_chr1_-_136700389_136700428	0.149342	NANOG.p2	AK035285|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B
mm9_v1_chr4_-_133158082_133158082	0.148232	NANOG.p2	NM_018754|Sfn|55948|stratifin
mm9_v1_chr18_+_56591785_56591811	0.146058	NANOG.p2	NM_026240|Gramd3|107022|GRAM domain containing 3	AK018691|Gramd3|107022|GRAM domain containing 3	AK164050|Gramd3|107022|GRAM domain containing 3
mm9_v1_chr1_+_159436875_159436945	0.144938	NANOG.p2	NM_033354|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	BC059194|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	AK173302|Sec16b|89867|SEC16 homolog B (S. cerevisiae)
mm9_v1_chr4_-_35792385_35792444	0.144828	NANOG.p2	BC137866|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC144985|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC145692|Lingo2|242384|leucine rich repeat and Ig domain containing 2	AK045639|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_001166001|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_175516|Lingo2|242384|leucine rich repeat and Ig domain containing 2
mm9_v1_chr15_+_101278175_101278219	0.141912	NANOG.p2	NM_025487|1700011A15Rik|66322|RIKEN cDNA 1700011A15 gene	BC048463|1700011A15Rik|66322|RIKEN cDNA 1700011A15 gene	AK007046|1700011A15Rik|66322|RIKEN cDNA 1700011A15 gene	AK005855|1700011A15Rik|66322|RIKEN cDNA 1700011A15 gene
mm9_v1_chrX_-_133267605_133267741	0.141484	NANOG.p2	
mm9_v1_chr18_+_74019038_74019047	0.136584	NANOG.p2	AY243876|Mro|71263|maestro	NM_027741|Mro|71263|maestro	AK015725|Mro|71263|maestro
mm9_v1_chr4_-_127008079_127008087	0.136319	NANOG.p2	NM_001160012|Gjb3|14620|gap junction protein, beta 3	AY390400|Gjb3|14620|gap junction protein, beta 3
mm9_v1_chr19_+_8876985_8877044	0.135845	NANOG.p2	AK142256|Zbtb3|75291|zinc finger and BTB domain containing 3	NM_133759|Zbtb3|75291|zinc finger and BTB domain containing 3	AK049258|Zbtb3|75291|zinc finger and BTB domain containing 3	BC119186|Zbtb3|75291|zinc finger and BTB domain containing 3	BC119188|Zbtb3|75291|zinc finger and BTB domain containing 3	NM_001098237|Zbtb3|75291|zinc finger and BTB domain containing 3	BC012410|Zbtb3|75291|zinc finger and BTB domain containing 3
mm9_v1_chr2_+_80479021_80479037	0.135757	NANOG.p2	AK009187|Nup35|69482|nucleoporin 35	AK145775|Nup35|69482|nucleoporin 35
mm9_v1_chr5_+_150331253_150331253	0.134588	NANOG.p2	AK087389|Wdr95|381693|WD40 repeat domain 95	NM_029440|Wdr95|381693|WD40 repeat domain 95
mm9_v1_chr8_+_24263742_24263871	0.132821	NANOG.p2	AK018683|Nkx6-3|74561|NK6 homeobox 3	NM_029002|Nkx6-3|74561|NK6 homeobox 3	AK147163|Nkx6-3|74561|NK6 homeobox 3	BC140994|Nkx6-3|74561|NK6 homeobox 3
mm9_v1_chr10_-_17635007_17635085	0.132105	NANOG.p2	BC094026|Heca|380629|headcase homolog (Drosophila)	AK134782|Heca|380629|headcase homolog (Drosophila)
mm9_v1_chr14_-_94287950_94288026	0.130562	NANOG.p2	NM_001081377|Pcdh9|211712|protocadherin 9	BC157952|Pcdh9|211712|protocadherin 9	BC172098|Pcdh9|211712|protocadherin 9	BC158114|Pcdh9|211712|protocadherin 9	BC158117|Pcdh9|211712|protocadherin 9
mm9_v1_chr5_-_116474254_116474473	0.130058	NANOG.p2	AK088250|Prkab1|19079|protein kinase, AMP-activated, beta 1 non-catalytic subunit	BC016398|Prkab1|19079|protein kinase, AMP-activated, beta 1 non-catalytic subunit	NM_031869|Prkab1|19079|protein kinase, AMP-activated, beta 1 non-catalytic subunit	AK153552|Prkab1|19079|protein kinase, AMP-activated, beta 1 non-catalytic subunit
mm9_v1_chr1_+_12682510_12682540	0.128375	NANOG.p2	NM_001198565|Sulf1|240725|sulfatase 1	NM_001198566|Sulf1|240725|sulfatase 1	AK078756|Sulf1|240725|sulfatase 1
mm9_v1_chr11_+_32646291_32646504	0.128157	NANOG.p2	AK207541|Fbxw11|103583|F-box and WD-40 domain protein 11	AK219433|Fbxw11|103583|F-box and WD-40 domain protein 11	AK216067|Fbxw11|103583|F-box and WD-40 domain protein 11	AK210303|Fbxw11|103583|F-box and WD-40 domain protein 11	AK213659|Fbxw11|103583|F-box and WD-40 domain protein 11	AK215208|Fbxw11|103583|F-box and WD-40 domain protein 11
mm9_v1_chrX_-_47150892_47150921	0.127966	NANOG.p2	AK030452|Igsf1|209268|immunoglobulin superfamily, member 1	BC089474|Igsf1|209268|immunoglobulin superfamily, member 1	AY227771|Igsf1|209268|immunoglobulin superfamily, member 1	AY227772|Igsf1|209268|immunoglobulin superfamily, member 1	BC100420|Igsf1|209268|immunoglobulin superfamily, member 1	NM_177591|Igsf1|209268|immunoglobulin superfamily, member 1	NM_177915|Igsf1|209268|immunoglobulin superfamily, member 1
mm9_v1_chr5_-_136174262_136174403	0.126141	NANOG.p2	
mm9_v1_chr6_+_97879810_97879849	0.126106	NANOG.p2	NM_001178049|Mitf|17342|microphthalmia-associated transcription factor	AK052895|Mitf|17342|microphthalmia-associated transcription factor	U19874|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr10_+_97110043_97110069	0.12193	NANOG.p2	AK137179|Epyc|13516|epiphycan	D78274|Epyc|13516|epiphycan
mm9_v1_chr19_+_42007957_42008102	0.121876	NANOG.p2	NM_023740|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AK151505|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AK168042|Zdhhc16|74168|zinc finger, DHHC domain containing 16	BC010835|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AF176814|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AK183781|Zdhhc16|74168|zinc finger, DHHC domain containing 16
mm9_v1_chr6_+_134932018_134932018	0.12083	NANOG.p2	NM_001109914|Apold1|381823|apolipoprotein L domain containing 1
mm9_v1_chrX_-_6765768_6765839	0.117092	NANOG.p2	AK142227|Clcn5|12728|chloride channel 5	AK145763|Clcn5|12728|chloride channel 5	BC036347|Clcn5|12728|chloride channel 5	AK052990|Clcn5|12728|chloride channel 5	AF134117|Clcn5|12728|chloride channel 5	NM_016691|Clcn5|12728|chloride channel 5
mm9_v1_chr9_-_96233411_96233654	0.117007	NANOG.p2	AK217555|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK213033|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK205378|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK217181|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK178890|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK181142|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK185963|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK212665|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK214140|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK216038|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK218295|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK218384|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide
mm9_v1_chr2_+_55288297_55288380	0.11692	NANOG.p2	BC068167|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3
mm9_v1_chr1_+_189821727_189821874	0.114111	NANOG.p2	BC082324|Esrrg|26381|estrogen-related receptor gamma	NM_011935|Esrrg|26381|estrogen-related receptor gamma	AB093266|Esrrg|26381|estrogen-related receptor gamma	AF117254|Esrrg|26381|estrogen-related receptor gamma	AB221580|Esrrg|26381|estrogen-related receptor gamma
mm9_v1_chr3_-_126701320_126701358	0.114082	NANOG.p2	BC059251|Ank2|109676|ankyrin 2, brain	AK082352|Ank2|109676|ankyrin 2, brain
mm9_v1_chr11_+_52202706_52202713	0.113589	NANOG.p2	AK183628|Vdac1|22333|voltage-dependent anion channel 1	AK195288|Vdac1|22333|voltage-dependent anion channel 1
mm9_v1_chr19_-_32177613_32177629	0.112039	NANOG.p2	BC137898|Asah2|54447|N-acylsphingosine amidohydrolase 2	BC145016|Asah2|54447|N-acylsphingosine amidohydrolase 2	AB037181|Asah2|54447|N-acylsphingosine amidohydrolase 2	NM_018830|Asah2|54447|N-acylsphingosine amidohydrolase 2
mm9_v1_chr11_-_79056525_79056525	0.110198	NANOG.p2	AK048511|Wsb1|78889|WD repeat and SOCS box-containing 1	NM_001042565|Wsb1|78889|WD repeat and SOCS box-containing 1
mm9_v1_chr2_+_173563060_173563229	0.10565	NANOG.p2	BC048231|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	NM_019806|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	BC057123|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK050632|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK081908|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AF115504|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK160925|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK172080|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chr19_-_41289262_41289457	0.104309	NANOG.p2	AK008994|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK159802|Tm9sf3|107358|transmembrane 9 superfamily member 3
mm9_v1_chr11_+_69809250_69809521	0.104304	NANOG.p2	NM_030064|Phf23|78246|PHD finger protein 23	AK019135|Phf23|78246|PHD finger protein 23	AK170729|Phf23|78246|PHD finger protein 23	BC033533|Phf23|78246|PHD finger protein 23	AK031159|Phf23|78246|PHD finger protein 23	AY099326|Phf23|78246|PHD finger protein 23	AY099327|Phf23|78246|PHD finger protein 23
mm9_v1_chr3_+_19431246_19431246	0.103963	NANOG.p2	NM_001163537|Dnajc5b|66326|DnaJ (Hsp40) homolog, subfamily C, member 5 beta
mm9_v1_chr9_-_119893775_119893775	0.103027	NANOG.p2	BC050066|Csrnp1|215418|cysteine-serine-rich nuclear protein 1	NM_153287|Csrnp1|215418|cysteine-serine-rich nuclear protein 1
mm9_v1_chr7_-_21288567_21288567	0.102359	NANOG.p2	NM_001167154|Gm8693|667543|predicted gene 8693	NM_001167155|Gm4144|100042980|predicted gene 4144
mm9_v1_chr9_-_13631482_13631562	0.101795	NANOG.p2	BC056968|Cep57|74360|centrosomal protein 57	AY251192|Cep57|74360|centrosomal protein 57	AK014873|Cep57|74360|centrosomal protein 57	BC030353|Cep57|74360|centrosomal protein 57	AK129053|Cep57|74360|centrosomal protein 57	NM_026665|Cep57|74360|centrosomal protein 57
mm9_v1_chr6_-_71390481_71390504	0.100878	NANOG.p2	BC050876|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
mm9_v1_chr19_-_4906607_4906628	0.100062	NANOG.p2	AK037753|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	BC076577|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK161343|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK045850|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK168901|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	NM_001033128|Bbs1|52028|Bardet-Biedl syndrome 1 (human)
mm9_v1_chr8_+_4238838_4238860	0.0999537	NANOG.p2	AK049267|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chr6_-_40837492_40837492	0.0965602	NANOG.p2	AB065134|Moxd2|194357|monooxygenase, DBH-like 2	NM_139296|Moxd2|194357|monooxygenase, DBH-like 2
mm9_v1_chr11_+_101229029_101229043	0.0929425	NANOG.p2	AK050279|G6pc|14377|glucose-6-phosphatase, catalytic	AK052656|G6pc|14377|glucose-6-phosphatase, catalytic	U00445|G6pc|14377|glucose-6-phosphatase, catalytic	BC013448|G6pc|14377|glucose-6-phosphatase, catalytic	NM_008061|G6pc|14377|glucose-6-phosphatase, catalytic
mm9_v1_chr16_+_23058457_23058465	0.092503	NANOG.p2	AY660571|Kng1|16644|kininogen 1
mm9_v1_chr2_+_32143769_32143812	0.0906923	NANOG.p2	AK077516|Golga2|99412|golgi autoantigen, golgin subfamily a, 2	NM_001080968|Golga2|99412|golgi autoantigen, golgin subfamily a, 2	NM_133852|Golga2|99412|golgi autoantigen, golgin subfamily a, 2
mm9_v1_chr12_+_39506844_39506916	0.0900725	NANOG.p2	NM_007960|Etv1|14009|ets variant gene 1	L10426|Etv1|14009|ets variant gene 1	AK144713|Etv1|14009|ets variant gene 1	BC005645|Etv1|14009|ets variant gene 1
mm9_v1_chr2_+_164595415_164595435	0.0888885	NANOG.p2	AK003722|Ube2c|68612|ubiquitin-conjugating enzyme E2C	AK136186|Ube2c|68612|ubiquitin-conjugating enzyme E2C	NM_026785|Ube2c|68612|ubiquitin-conjugating enzyme E2C
mm9_v1_chr11_+_69831951_69832106	0.0873552	NANOG.p2	NM_001109752|Dlg4|13385|discs, large homolog 4 (Drosophila)	NM_007864|Dlg4|13385|discs, large homolog 4 (Drosophila)
mm9_v1_chr5_-_121459315_121459358	0.0858258	NANOG.p2	D29965|Rph3a|19894|rabphilin 3A	AB112924|Rph3a|19894|rabphilin 3A
mm9_v1_chr10_+_26492282_26492396	0.0840653	NANOG.p2	BC030858|Arhgap18|73910|Rho GTPase activating protein 18	NM_176837|Arhgap18|73910|Rho GTPase activating protein 18	AK087800|Arhgap18|73910|Rho GTPase activating protein 18	AK014728|Arhgap18|73910|Rho GTPase activating protein 18
mm9_v1_chr5_-_138042267_138042299	0.0824089	NANOG.p2	BC039620|Mospd3|68929|motile sperm domain containing 3	NM_030037|Mospd3|68929|motile sperm domain containing 3	BC034167|Mospd3|68929|motile sperm domain containing 3
mm9_v1_chr2_+_164595447_164595456	0.0792088	NANOG.p2	BC147032|Ube2c|68612|ubiquitin-conjugating enzyme E2C	BC147033|Ube2c|68612|ubiquitin-conjugating enzyme E2C	BC171983|Ube2c|68612|ubiquitin-conjugating enzyme E2C
mm9_v1_chr8_+_4238718_4238771	0.0778632	NANOG.p2	NM_001042557|Map2k7|26400|mitogen-activated protein kinase kinase 7	NM_001164172|Map2k7|26400|mitogen-activated protein kinase kinase 7	NM_011944|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF022112|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF022113|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chr16_-_88878143_88878282	0.0774811	NANOG.p2	AF345296|Krtap16-6|170655|keratin associated protein 16-6	AF345295|Krtap16-5|77918|keratin associated protein 16-5	BC115545|Krtap16-5|77918|keratin associated protein 16-5	BC115546|Krtap16-5|77918|keratin associated protein 16-5	AK020697|Krtap16-5|77918|keratin associated protein 16-5	NM_130857|Krtap16-5|77918|keratin associated protein 16-5
mm9_v1_chr18_+_66618186_66618270	0.0739887	NANOG.p2	AK143990|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	AK169914|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	AK043856|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	AK088556|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	AB041230|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	NM_021451|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	BC050821|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1
mm9_v1_chr12_-_74147683_74147691	0.0731775	NANOG.p2	BC023304|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr8_-_28266926_28267017	0.0719325	NANOG.p2	BC091001|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)
mm9_v1_chr19_+_56536126_56536129	0.0691795	NANOG.p2	NM_001164263|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene	NM_172641|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene	AK036908|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene	AK053921|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene
mm9_v1_chrX_+_166123130_166123181	0.0690607	NANOG.p2	AK160120|Mid1|17318|midline 1	NM_010797|Mid1|17318|midline 1	Y14848|Mid1|17318|midline 1
mm9_v1_chr1_-_195196423_195196475	0.0685526	NANOG.p2	AF428262|Camk1g|215303|calcium/calmodulin-dependent protein kinase I gamma	BC021840|Camk1g|215303|calcium/calmodulin-dependent protein kinase I gamma	NM_144817|Camk1g|215303|calcium/calmodulin-dependent protein kinase I gamma
mm9_v1_chr10_+_57351786_57351901	0.067462	NANOG.p2	L02241|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039051|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_008863|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK005281|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK089677|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK083875|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK156851|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK157521|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK171359|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK156950|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific
mm9_v1_chr7_-_23014502_23014502	0.0646897	NANOG.p2	NM_001166742|Vmn1r118|667259|vomeronasal 1 receptor 118	NM_001167150|Gm8453|667094|predicted gene 8453	NM_001167151|Gm4498|100043523|predicted gene 4498
mm9_v1_chr18_+_61747381_61747495	0.0612547	NANOG.p2	AK217508|Csnk1a1|93687|casein kinase 1, alpha 1	AK218260|Csnk1a1|93687|casein kinase 1, alpha 1	AK211333|Csnk1a1|93687|casein kinase 1, alpha 1
mm9_v1_chrX_+_155810110_155810226	0.0599039	NANOG.p2	AK031113|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK030774|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK166629|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK166852|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	NM_025437|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK005185|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK012714|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK012233|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK021283|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK090053|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK165574|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK007301|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK077710|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	BC027284|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK134827|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK134969|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK012464|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked
mm9_v1_chr18_+_74442753_74442835	0.0592549	NANOG.p2	NM_028948|Ccdc11|74453|coiled-coil domain containing 11	AK016821|Ccdc11|74453|coiled-coil domain containing 11	AK162352|Ccdc11|74453|coiled-coil domain containing 11	BC099500|Ccdc11|74453|coiled-coil domain containing 11
mm9_v1_chr11_-_100624237_100624244	0.0569188	NANOG.p2	BC116943|Hcrt|15171|hypocretin	BC116969|Hcrt|15171|hypocretin	AF019566|Hcrt|15171|hypocretin	AF041242|Hcrt|15171|hypocretin	NM_010410|Hcrt|15171|hypocretin
mm9_v1_chr2_+_164595389_164595402	0.0562623	NANOG.p2	AK160740|Ube2c|68612|ubiquitin-conjugating enzyme E2C
mm9_v1_chr9_+_72596925_72596929	0.054527	NANOG.p2	AK195685|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4
mm9_v1_chr3_+_61168428_61168660	0.0535482	NANOG.p2	NM_028712|Rap2b|74012|RAP2B, member of RAS oncogene family	AK045030|Rap2b|74012|RAP2B, member of RAS oncogene family	AK014462|Rap2b|74012|RAP2B, member of RAS oncogene family	AK042941|Rap2b|74012|RAP2B, member of RAS oncogene family	AK163186|Rap2b|74012|RAP2B, member of RAS oncogene family	AK150187|Rap2b|74012|RAP2B, member of RAS oncogene family	BC046528|Rap2b|74012|RAP2B, member of RAS oncogene family
mm9_v1_chr11_+_53246787_53246879	0.0514375	NANOG.p2	NM_008110|Gdf9|14566|growth differentiation factor 9	AK136145|Gdf9|14566|growth differentiation factor 9	BC052667|Gdf9|14566|growth differentiation factor 9	L06444|Gdf9|14566|growth differentiation factor 9
mm9_v1_chr9_-_62644026_62644272	0.0497595	NANOG.p2	AK078303|Fem1b|14155|feminization 1 homolog b (C. elegans)	AK160393|Fem1b|14155|feminization 1 homolog b (C. elegans)
mm9_v1_chr5_+_91188324_91188411	0.0489458	NANOG.p2	NM_009141|Cxcl5|20311|chemokine (C-X-C motif) ligand 5	AK044397|Cxcl5|20311|chemokine (C-X-C motif) ligand 5	AK156787|Cxcl5|20311|chemokine (C-X-C motif) ligand 5	U27267|Cxcl5|20311|chemokine (C-X-C motif) ligand 5	BC024392|Cxcl5|20311|chemokine (C-X-C motif) ligand 5
mm9_v1_chr5_+_90947970_90948068	0.0478016	NANOG.p2	AK143987|Afm|280662|afamin	BC100597|Afm|280662|afamin	NM_145146|Afm|280662|afamin	BC026681|Afm|280662|afamin
mm9_v1_chr10_+_53057491_53057558	0.0471244	NANOG.p2	NM_001141927|Pln|18821|phospholamban	NM_023129|Pln|18821|phospholamban	BC061097|Pln|18821|phospholamban	AK002622|Pln|18821|phospholamban	AK040718|Pln|18821|phospholamban	S46792|Pln|18821|phospholamban	AK142708|Pln|18821|phospholamban	AK052199|Pln|18821|phospholamban
mm9_v1_chr19_+_56536148_56536166	0.0456007	NANOG.p2	BC090250|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene
mm9_v1_chr5_-_100465086_100465197	0.0441597	NANOG.p2	AK011143|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like
mm9_v1_chr4_+_147374850_147374855	0.0417364	NANOG.p2	AK147180|Nppa|230899|natriuretic peptide type A	BC089615|Nppa|230899|natriuretic peptide type A	NM_008725|Nppa|230899|natriuretic peptide type A
mm9_v1_chr2_+_105744791_105744850	0.0407261	NANOG.p2	AK005356|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011278|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	NM_028260|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011382|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK078300|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011466|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK015978|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011618|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011872|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011420|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK135670|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK009570|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK010075|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK012181|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK168202|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	BC008259|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
mm9_v1_chrX_+_130722039_130722141	0.039677	NANOG.p2	AK016872|Arl13a|74448|ADP-ribosylation factor-like 13A	NM_028947|Arl13a|74448|ADP-ribosylation factor-like 13A	BC100522|Arl13a|74448|ADP-ribosylation factor-like 13A
mm9_v1_chr6_-_13785233_13785235	0.0371654	NANOG.p2	AK013598|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr10_+_80657435_80657438	0.0346287	NANOG.p2	AK084504|2310050B05Rik|69678|RIKEN cDNA 2310050B05 gene	AK136697|2310050B05Rik|69678|RIKEN cDNA 2310050B05 gene	AK009897|2310050B05Rik|69678|RIKEN cDNA 2310050B05 gene	AK033837|2310050B05Rik|69678|RIKEN cDNA 2310050B05 gene
mm9_v1_chr13_-_104623606_104623708	0.034206	NANOG.p2	BC005691|Erbb2ip|59079|Erbb2 interacting protein
mm9_v1_chr2_-_62411970_62412077	0.0310065	NANOG.p2	BC019190|Fap|14089|fibroblast activation protein	AK051959|Fap|14089|fibroblast activation protein	NM_007986|Fap|14089|fibroblast activation protein	Y10007|Fap|14089|fibroblast activation protein
mm9_v1_chr10_+_98725871_98725972	0.0278784	NANOG.p2	AK009131|Dusp6|67603|dual specificity phosphatase 6	AK159146|Dusp6|67603|dual specificity phosphatase 6	AK159900|Dusp6|67603|dual specificity phosphatase 6
mm9_v1_chr5_-_71233855_71233855	0.0241162	NANOG.p2	AK034332|Gabrg1|14405|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	NM_010252|Gabrg1|14405|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1
mm9_v1_chr2_+_179805287_179805329	0.0224502	NANOG.p2	AK163448|Gtpbp5|52856|GTP binding protein 5	AK040689|Gtpbp5|52856|GTP binding protein 5	NM_001083328|Gtpbp5|52856|GTP binding protein 5	NM_001083329|Gtpbp5|52856|GTP binding protein 5	NM_028422|Gtpbp5|52856|GTP binding protein 5	NM_181424|Gtpbp5|52856|GTP binding protein 5	AK013710|Gtpbp5|52856|GTP binding protein 5	BC025144|Gtpbp5|52856|GTP binding protein 5
mm9_v1_chr2_-_85359091_85359185	0.02067	NANOG.p2	BC120879|4833423E24Rik|228151|RIKEN cDNA 4833423E24 gene	NM_001081664|4833423E24Rik|228151|RIKEN cDNA 4833423E24 gene	AK076485|4833423E24Rik|228151|RIKEN cDNA 4833423E24 gene
mm9_v1_chr2_-_27331122_27331221	0.018841	NANOG.p2	AK076472|Brd3|67382|bromodomain containing 3	AK136429|Brd3|67382|bromodomain containing 3	BC004832|Brd3|67382|bromodomain containing 3	AF269193|Brd3|67382|bromodomain containing 3	AK161164|Brd3|67382|bromodomain containing 3	AK167573|Brd3|67382|bromodomain containing 3	AK136007|Brd3|67382|bromodomain containing 3	AK160752|Brd3|67382|bromodomain containing 3	AK081471|Brd3|67382|bromodomain containing 3	AK037435|Brd3|67382|bromodomain containing 3	AK159827|Brd3|67382|bromodomain containing 3	NM_001113573|Brd3|67382|bromodomain containing 3	NM_001113574|Brd3|67382|bromodomain containing 3
mm9_v1_chr10_+_89280918_89280988	0.0172774	NANOG.p2	AK079985|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK046432|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK008586|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like
mm9_v1_chr12_-_86682028_86682042	0.0167578	NANOG.p2	
mm9_v1_chr10_+_60938535_60938600	0.011365	NANOG.p2	AK139384|Lrrc20|216011|leucine rich repeat containing 20	AK136380|Lrrc20|216011|leucine rich repeat containing 20	AK145920|Lrrc20|216011|leucine rich repeat containing 20	AK150142|Lrrc20|216011|leucine rich repeat containing 20	BC036304|Lrrc20|216011|leucine rich repeat containing 20	NM_153542|Lrrc20|216011|leucine rich repeat containing 20	AK150246|Lrrc20|216011|leucine rich repeat containing 20
mm9_v1_chr5_-_121459496_121459582	0.00767404	NANOG.p2	BC042585|Rph3a|19894|rabphilin 3A	NM_011286|Rph3a|19894|rabphilin 3A
mm9_v1_chr15_-_81238649_81238728	0.00628188	NANOG.p2	BC104396|Dnajb7|57755|DnaJ (Hsp40) homolog, subfamily B, member 7	BC104397|Dnajb7|57755|DnaJ (Hsp40) homolog, subfamily B, member 7	BC119478|Dnajb7|57755|DnaJ (Hsp40) homolog, subfamily B, member 7	BC048738|Dnajb7|57755|DnaJ (Hsp40) homolog, subfamily B, member 7	AB028855|Dnajb7|57755|DnaJ (Hsp40) homolog, subfamily B, member 7	NM_021317|Dnajb7|57755|DnaJ (Hsp40) homolog, subfamily B, member 7	AK006201|Dnajb7|57755|DnaJ (Hsp40) homolog, subfamily B, member 7	AK077186|Dnajb7|57755|DnaJ (Hsp40) homolog, subfamily B, member 7
mm9_v1_chr13_+_25035416_25035485	0.0059428	NANOG.p2	AY081194|Gpld1|14756|glycosylphosphatidylinositol specific phospholipase D1	AK004957|Gpld1|14756|glycosylphosphatidylinositol specific phospholipase D1	BC019146|Gpld1|14756|glycosylphosphatidylinositol specific phospholipase D1	AY333960|Gpld1|14756|glycosylphosphatidylinositol specific phospholipase D1
mm9_v1_chr2_+_34631709_34631818	0.00573391	NANOG.p2	AK208906|Hspa5|14828|heat shock protein 5
mm9_v1_chr2_-_119586142_119586166	0.00392227	NANOG.p2	BC141299|Ltk|17005|leukocyte tyrosine kinase	M90470|Ltk|17005|leukocyte tyrosine kinase	NM_203345|Ltk|17005|leukocyte tyrosine kinase	NM_206942|Ltk|17005|leukocyte tyrosine kinase
mm9_v1_chr6_+_87378995_87379026	0.00262795	NANOG.p2	BC145044|Bmp10|12154|bone morphogenetic protein 10	BC145983|Bmp10|12154|bone morphogenetic protein 10	NM_009756|Bmp10|12154|bone morphogenetic protein 10	AF101033|Bmp10|12154|bone morphogenetic protein 10
mm9_v1_chr3_-_50247306_50247534	0.00222415	NANOG.p2	AK162233|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK170568|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141402|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141408|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AB022345|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766236|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766237|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK165599|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089202|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037742|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK076322|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK163168|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171252|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171327|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089283|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171192|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037490|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	NM_011990|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm9_v1_chr7_-_139978601_139978617	0.00171753	NANOG.p2	BC035523|Fam53b|77938|family with sequence similarity 53, member B	AK020830|Fam53b|77938|family with sequence similarity 53, member B	NM_175268|Fam53b|77938|family with sequence similarity 53, member B
