mm9_v1_chr16_+_91270319_91270415	46.0744	NHLH1,2.p2	AK158791|Olig1|50914|oligodendrocyte transcription factor 1
mm9_v1_chr14_-_68742863_68742903	29.2189	NHLH1,2.p2	BC128564|Nefm|18040|neurofilament, medium polypeptide	BC119602|Nefm|18040|neurofilament, medium polypeptide	DQ201636|Nefm|18040|neurofilament, medium polypeptide	BC058333|Nefm|18040|neurofilament, medium polypeptide	AK051696|Nefm|18040|neurofilament, medium polypeptide	AK018234|Nefm|18040|neurofilament, medium polypeptide	AK051296|Nefm|18040|neurofilament, medium polypeptide	AK080794|Nefm|18040|neurofilament, medium polypeptide	AK164318|Nefm|18040|neurofilament, medium polypeptide	AK165041|Nefm|18040|neurofilament, medium polypeptide	BC052352|Nefm|18040|neurofilament, medium polypeptide
mm9_v1_chr8_+_128519295_128519355	28.887	NHLH1,2.p2	BC003729|Kcnk1|16525|potassium channel, subfamily K, member 1
mm9_v1_chr14_-_13655592_13655605	28.8332	NHLH1,2.p2	AK122453|Cadps|27062|Ca2+-dependent secretion activator	NM_001042617|Cadps|27062|Ca2+-dependent secretion activator	NM_012061|Cadps|27062|Ca2+-dependent secretion activator
mm9_v1_chr14_-_13655558_13655588	27.3346	NHLH1,2.p2	D86214|Cadps|27062|Ca2+-dependent secretion activator	BC079679|Cadps|27062|Ca2+-dependent secretion activator
mm9_v1_chr2_+_158201373_158201515	24.0923	NHLH1,2.p2	NM_175692|Snhg11|319317|small nucleolar RNA host gene 11	AK157790|Snhg11|319317|small nucleolar RNA host gene 11	AK080745|Snhg11|319317|small nucleolar RNA host gene 11	AK133939|Snhg11|319317|small nucleolar RNA host gene 11	AK138473|Snhg11|319317|small nucleolar RNA host gene 11	BC049241|Snhg11|319317|small nucleolar RNA host gene 11	BC030414|Snhg11|319317|small nucleolar RNA host gene 11
mm9_v1_chr8_+_128519001_128519113	23.8419	NHLH1,2.p2	NM_008430|Kcnk1|16525|potassium channel, subfamily K, member 1	AF033017|Kcnk1|16525|potassium channel, subfamily K, member 1	AK137224|Kcnk1|16525|potassium channel, subfamily K, member 1
mm9_v1_chr9_-_53823107_53823121	22.0351	NHLH1,2.p2	AK132239|Elmod1|270162|ELMO domain containing 1	NM_177769|Elmod1|270162|ELMO domain containing 1
mm9_v1_chr12_+_109572514_109572610	21.448	NHLH1,2.p2	BC018307|Cyp46a1|13116|cytochrome P450, family 46, subfamily a, polypeptide 1	AK140740|Cyp46a1|13116|cytochrome P450, family 46, subfamily a, polypeptide 1	AF094479|Cyp46a1|13116|cytochrome P450, family 46, subfamily a, polypeptide 1	NM_010010|Cyp46a1|13116|cytochrome P450, family 46, subfamily a, polypeptide 1
mm9_v1_chr19_+_47089168_47089192	19.6211	NHLH1,2.p2	BC018383|Ina|226180|internexin neuronal intermediate filament protein, alpha	NM_146100|Ina|226180|internexin neuronal intermediate filament protein, alpha	L36390|Ina|226180|internexin neuronal intermediate filament protein, alpha
mm9_v1_chrX_-_119510890_119511030	19.6055	NHLH1,2.p2	BC027045|Nap1l3|54561|nucleosome assembly protein 1-like 3	AK078521|Nap1l3|54561|nucleosome assembly protein 1-like 3	BC020176|Nap1l3|54561|nucleosome assembly protein 1-like 3	NM_138742|Nap1l3|54561|nucleosome assembly protein 1-like 3	AB010711|Nap1l3|54561|nucleosome assembly protein 1-like 3
mm9_v1_chr4_+_137263376_137263436	19.1705	NHLH1,2.p2	AK019076|Rap1gap|110351|Rap1 GTPase-activating protein
mm9_v1_chr1_-_84692750_84692795	18.4749	NHLH1,2.p2	BC034634|Dner|227325|delta/notch-like EGF-related receptor	NM_152915|Dner|227325|delta/notch-like EGF-related receptor
mm9_v1_chr15_+_78744802_78744815	17.8089	NHLH1,2.p2	BC058388|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase
mm9_v1_chr18_+_82723920_82724127	17.4984	NHLH1,2.p2	AK005129|Mbp|17196|myelin basic protein	M15060|Mbp|17196|myelin basic protein	BC004704|Mbp|17196|myelin basic protein	DQ887821|Mbp|17196|myelin basic protein	M15062|Mbp|17196|myelin basic protein	AK189263|Mbp|17196|myelin basic protein	AK190490|Mbp|17196|myelin basic protein	AK191010|Mbp|17196|myelin basic protein	AK195158|Mbp|17196|myelin basic protein	AK197274|Mbp|17196|myelin basic protein	AK199946|Mbp|17196|myelin basic protein
mm9_v1_chr14_-_124026357_124026365	17.3586	NHLH1,2.p2	AK040761|Nalcn|338370|sodium leak channel, non-selective	AK143219|Nalcn|338370|sodium leak channel, non-selective	NM_177393|Nalcn|338370|sodium leak channel, non-selective
mm9_v1_chr15_+_78744576_78744597	17.1246	NHLH1,2.p2	BC069982|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase
mm9_v1_chr5_-_108978950_108979047	16.631	NHLH1,2.p2	BC014803|Cplx1|12889|complexin 1	D38614|Cplx1|12889|complexin 1	AK158166|Cplx1|12889|complexin 1	AK134820|Cplx1|12889|complexin 1	AK159026|Cplx1|12889|complexin 1	NM_007756|Cplx1|12889|complexin 1
mm9_v1_chr7_+_53651811_53651938	16.4138	NHLH1,2.p2	NM_008421|Kcnc1|16502|potassium voltage gated channel, Shaw-related subfamily, member 1	AK147476|Kcnc1|16502|potassium voltage gated channel, Shaw-related subfamily, member 1	AK147682|Kcnc1|16502|potassium voltage gated channel, Shaw-related subfamily, member 1	NM_001112739|Kcnc1|16502|potassium voltage gated channel, Shaw-related subfamily, member 1
mm9_v1_chr4_-_133053867_133053924	16.3721	NHLH1,2.p2	AY142705|Trnp1|69539|TMF1-regulated nuclear protein 1
mm9_v1_chrX_+_7496899_7497045	16.3403	NHLH1,2.p2	AF181560|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor	NM_013892|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor	AF293356|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor	AK076137|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor	AK002969|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor	BC012263|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor
mm9_v1_chr7_+_64845887_64845914	16.3136	NHLH1,2.p2	AK083107|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	NM_001038701|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm9_v1_chr4_-_133054355_133054483	16.2554	NHLH1,2.p2	BC049168|Trnp1|69539|TMF1-regulated nuclear protein 1	NM_001081156|Trnp1|69539|TMF1-regulated nuclear protein 1
mm9_v1_chr7_+_4071087_4071169	15.1457	NHLH1,2.p2	AK043998|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_001001454|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_001109765|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_021324|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK031550|Ttyh1|57776|tweety homolog 1 (Drosophila)
mm9_v1_chr8_-_73011217_73011286	14.8546	NHLH1,2.p2	AK005155|Tmem59l|67937|transmembrane protein 59-like	BC056172|Tmem59l|67937|transmembrane protein 59-like	NM_182991|Tmem59l|67937|transmembrane protein 59-like
mm9_v1_chr9_+_103014463_103014489	14.8522	NHLH1,2.p2	AB232597|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr15_+_78744862_78744934	14.8097	NHLH1,2.p2	BC037010|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase
mm9_v1_chr18_+_45719464_45719553	14.2371	NHLH1,2.p2	AK087908|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK050390|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr7_+_134094045_134094242	14.0419	NHLH1,2.p2	AK034088|Sez6l2|233878|seizure related 6 homolog like 2	AK165738|Sez6l2|233878|seizure related 6 homolog like 2	BC096615|Sez6l2|233878|seizure related 6 homolog like 2	BC011475|Sez6l2|233878|seizure related 6 homolog like 2	NM_144926|Sez6l2|233878|seizure related 6 homolog like 2
mm9_v1_chr8_+_46744023_46744252	13.8349	NHLH1,2.p2	AK079130|Sorbs2|234214|sorbin and SH3 domain containing 2	AK140498|Sorbs2|234214|sorbin and SH3 domain containing 2	AK050951|Sorbs2|234214|sorbin and SH3 domain containing 2	BC039163|Sorbs2|234214|sorbin and SH3 domain containing 2
mm9_v1_chr18_+_45719732_45719807	13.5981	NHLH1,2.p2	AY123778|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	BC125475|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	BC137656|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AF357240|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AF533008|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AY280964|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	EU478850|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	NM_080465|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr12_-_73509925_73510040	13.2124	NHLH1,2.p2	NM_153457|Rtn1|104001|reticulon 1	AK132364|Rtn1|104001|reticulon 1
mm9_v1_chr4_-_57003214_57003289	13.2026	NHLH1,2.p2	NM_001142965|6430704M03Rik|230235|RIKEN cDNA 6430704M03 gene	BC132345|6430704M03Rik|230235|RIKEN cDNA 6430704M03 gene
mm9_v1_chr1_-_166387998_166388161	13.1323	NHLH1,2.p2	X16646|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	BC094070|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	BC027319|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK005071|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK140862|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK160405|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK161891|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr9_-_54349409_54349432	13.0629	NHLH1,2.p2	AK170274|Dmxl2|235380|Dmx-like 2	AK048831|Dmxl2|235380|Dmx-like 2	AK053672|Dmxl2|235380|Dmx-like 2	NM_172771|Dmxl2|235380|Dmx-like 2
mm9_v1_chr2_+_132607398_132607407	12.8962	NHLH1,2.p2	AK133786|Chgb|12653|chromogranin B	AK019893|Chgb|12653|chromogranin B	AK044172|Chgb|12653|chromogranin B	AK077489|Chgb|12653|chromogranin B	AK133629|Chgb|12653|chromogranin B	AK133739|Chgb|12653|chromogranin B	X53028|Chgb|12653|chromogranin B
mm9_v1_chr9_-_53822931_53822996	12.8123	NHLH1,2.p2	BC049160|Elmod1|270162|ELMO domain containing 1	AK029207|Elmod1|270162|ELMO domain containing 1
mm9_v1_chr2_+_132607408_132607417	12.7019	NHLH1,2.p2	BC014736|Chgb|12653|chromogranin B	X51429|Chgb|12653|chromogranin B
mm9_v1_chr2_+_90730089_90730144	12.6174	NHLH1,2.p2	AK029777|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4
mm9_v1_chr9_-_75459046_75459076	12.5909	NHLH1,2.p2	AF177170|Tmod2|50876|tropomodulin 2
mm9_v1_chr9_+_103014374_103014418	12.5651	NHLH1,2.p2	BC060618|Rab6b|270192|RAB6B, member RAS oncogene family	NM_173781|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr10_-_108447894_108447956	12.4682	NHLH1,2.p2	D37792|Syt1|20979|synaptotagmin I	AK164153|Syt1|20979|synaptotagmin I	AK018163|Syt1|20979|synaptotagmin I
mm9_v1_chr5_-_67009869_67009948	12.3503	NHLH1,2.p2	BC076587|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	AK169495|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	AK004792|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	NM_009686|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	AK167649|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	AK032770|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2
mm9_v1_chr10_-_108447996_108448001	12.228	NHLH1,2.p2	AK013798|Syt1|20979|synaptotagmin I	AK078790|Syt1|20979|synaptotagmin I
mm9_v1_chr5_-_67009992_67010044	12.075	NHLH1,2.p2	AK169959|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	AK153260|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2
mm9_v1_chr4_-_154719714_154719796	12.05	NHLH1,2.p2	AK147300|Prkcz|18762|protein kinase C, zeta
mm9_v1_chr11_-_58751993_58752137	11.9172	NHLH1,2.p2	AK177935|Rnf187|108660|ring finger protein 187	AK196624|Rnf187|108660|ring finger protein 187
mm9_v1_chrX_-_159081510_159081550	11.9138	NHLH1,2.p2	AY263368|Reps2|194590|RALBP1 associated Eps domain containing protein 2	NM_178256|Reps2|194590|RALBP1 associated Eps domain containing protein 2
mm9_v1_chr10_-_108448003_108448027	11.8709	NHLH1,2.p2	BC048187|Syt1|20979|synaptotagmin I	AK019304|Syt1|20979|synaptotagmin I	AK048973|Syt1|20979|synaptotagmin I	AK133578|Syt1|20979|synaptotagmin I
mm9_v1_chr8_-_48374715_48374736	11.7736	NHLH1,2.p2	AK129346|Stox2|71069|storkhead box 2
mm9_v1_chr7_-_31911884_31911980	11.7558	NHLH1,2.p2	BC009652|Scn1b|20266|sodium channel, voltage-gated, type I, beta	NM_011322|Scn1b|20266|sodium channel, voltage-gated, type I, beta
mm9_v1_chr2_+_132607432_132607478	11.7484	NHLH1,2.p2	AK077487|Chgb|12653|chromogranin B
mm9_v1_chr1_-_84692352_84692593	11.6333	NHLH1,2.p2	AB067650|Dner|227325|delta/notch-like EGF-related receptor	AF370126|Dner|227325|delta/notch-like EGF-related receptor	AY032924|Dner|227325|delta/notch-like EGF-related receptor	AK044597|Dner|227325|delta/notch-like EGF-related receptor	AK030642|Dner|227325|delta/notch-like EGF-related receptor
mm9_v1_chr7_-_13623543_13623681	11.6101	NHLH1,2.p2	NM_001168469|Ube2m|22192|ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast)
mm9_v1_chrX_+_162676870_162676901	11.5343	NHLH1,2.p2	NM_001177961|Gpm6b|14758|glycoprotein m6b	NM_001177962|Gpm6b|14758|glycoprotein m6b	NM_023122|Gpm6b|14758|glycoprotein m6b	AK132778|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr15_+_81641832_81641859	11.5291	NHLH1,2.p2	NM_017376|Tef|21685|thyrotroph embryonic factor	AY540631|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr8_-_112692071_112692144	11.5067	NHLH1,2.p2	BC017646|Calb2|12308|calbindin 2	NM_007586|Calb2|12308|calbindin 2	AK032171|Calb2|12308|calbindin 2
mm9_v1_chr7_-_31911733_31911742	11.4848	NHLH1,2.p2	U46681|Scn1b|20266|sodium channel, voltage-gated, type I, beta
mm9_v1_chr17_-_26338254_26338295	11.4521	NHLH1,2.p2	BC002032|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	NM_008113|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma
mm9_v1_chr16_-_85173930_85173941	11.4297	NHLH1,2.p2	AK159718|App|11820|amyloid beta (A4) precursor protein	M18373|App|11820|amyloid beta (A4) precursor protein	U84012|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr7_+_64846558_64846592	11.4261	NHLH1,2.p2	U14420|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	AK039070|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	AK147247|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm9_v1_chr19_-_7292086_7292113	11.3431	NHLH1,2.p2	NM_007750|Cox8a|12868|cytochrome c oxidase, subunit VIIIa
mm9_v1_chr19_-_7292057_7292085	11.3293	NHLH1,2.p2	AK002218|Cox8a|12868|cytochrome c oxidase, subunit VIIIa
mm9_v1_chr5_-_34630913_34631012	11.2396	NHLH1,2.p2	BC139050|Zfyve28|231125|zinc finger, FYVE domain containing 28	BC139051|Zfyve28|231125|zinc finger, FYVE domain containing 28	AK129414|Zfyve28|231125|zinc finger, FYVE domain containing 28	NM_001015039|Zfyve28|231125|zinc finger, FYVE domain containing 28	AK036334|Zfyve28|231125|zinc finger, FYVE domain containing 28
mm9_v1_chr17_-_26338106_26338229	11.2388	NHLH1,2.p2	L42463|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	U73198|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	AK144321|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	BC158003|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma
mm9_v1_chr13_-_47110187_47110218	11.1563	NHLH1,2.p2	BC062644|Nhlrc1|105193|NHL repeat containing 1	BC118952|Nhlrc1|105193|NHL repeat containing 1	AK045746|Nhlrc1|105193|NHL repeat containing 1	BC118951|Nhlrc1|105193|NHL repeat containing 1	NM_175340|Nhlrc1|105193|NHL repeat containing 1
mm9_v1_chr19_+_6427922_6428015	11.1346	NHLH1,2.p2	BC145496|Nrxn2|18190|neurexin II	BC150784|Nrxn2|18190|neurexin II	NM_020253|Nrxn2|18190|neurexin II
mm9_v1_chr3_+_13471681_13471721	11.1291	NHLH1,2.p2	AK079659|Ralyl|76897|RALY RNA binding protein-like	AK032086|Ralyl|76897|RALY RNA binding protein-like
mm9_v1_chr3_+_107698740_107698844	10.98	NHLH1,2.p2	AK028098|Gstm5|14866|glutathione S-transferase, mu 5	NM_010360|Gstm5|14866|glutathione S-transferase, mu 5	U24428|Gstm5|14866|glutathione S-transferase, mu 5	BC008206|Gstm5|14866|glutathione S-transferase, mu 5	AK019317|Gstm5|14866|glutathione S-transferase, mu 5	AK002750|Gstm5|14866|glutathione S-transferase, mu 5
mm9_v1_chr6_-_77929660_77929669	10.9705	NHLH1,2.p2	NM_001109764|Ctnna2|12386|catenin (cadherin associated protein), alpha 2	NM_009819|Ctnna2|12386|catenin (cadherin associated protein), alpha 2	NM_145732|Ctnna2|12386|catenin (cadherin associated protein), alpha 2
mm9_v1_chr12_+_101437735_101437896	10.9499	NHLH1,2.p2	AK150978|Calm1|12313|calmodulin 1	AK151784|Calm1|12313|calmodulin 1	AK151992|Calm1|12313|calmodulin 1	AK159762|Calm1|12313|calmodulin 1	AK160057|Calm1|12313|calmodulin 1	AK160508|Calm1|12313|calmodulin 1	AK162314|Calm1|12313|calmodulin 1	AK169027|Calm1|12313|calmodulin 1	AK167353|Calm1|12313|calmodulin 1	M19381|Calm1|12313|calmodulin 1	AK004673|Calm1|12313|calmodulin 1	AK151923|Calm1|12313|calmodulin 1	AK152148|Calm1|12313|calmodulin 1	AK152850|Calm1|12313|calmodulin 1	AK153348|Calm1|12313|calmodulin 1	AK153546|Calm1|12313|calmodulin 1	AK168002|Calm1|12313|calmodulin 1	AK168803|Calm1|12313|calmodulin 1	AK169055|Calm1|12313|calmodulin 1	AK169640|Calm1|12313|calmodulin 1	AK153426|Calm1|12313|calmodulin 1	AK013695|Calm1|12313|calmodulin 1	AK088141|Calm1|12313|calmodulin 1	AK150288|Calm1|12313|calmodulin 1	AK151001|Calm1|12313|calmodulin 1	AK151552|Calm1|12313|calmodulin 1	AK152897|Calm1|12313|calmodulin 1	AK152719|Calm1|12313|calmodulin 1	AK166308|Calm1|12313|calmodulin 1	AK168663|Calm1|12313|calmodulin 1	AK152715|Calm1|12313|calmodulin 1	AK153004|Calm1|12313|calmodulin 1	BC054805|Calm1|12313|calmodulin 1	NM_009790|Calm1|12313|calmodulin 1	AK161302|Calm1|12313|calmodulin 1	AK168241|Calm1|12313|calmodulin 1	X61432|Calm1|12313|calmodulin 1
mm9_v1_chr9_+_103014445_103014461	10.9019	NHLH1,2.p2	AK035893|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr3_-_125641429_125641514	10.9011	NHLH1,2.p2	AK163650|Ugt8a|22239|UDP galactosyltransferase 8A	AK128994|Ugt8a|22239|UDP galactosyltransferase 8A	AK137364|Ugt8a|22239|UDP galactosyltransferase 8A	AK144005|Ugt8a|22239|UDP galactosyltransferase 8A	NM_011674|Ugt8a|22239|UDP galactosyltransferase 8A	AK078371|Ugt8a|22239|UDP galactosyltransferase 8A
mm9_v1_chr12_+_16660245_16660299	10.8634	NHLH1,2.p2	AK158943|Ntsr2|18217|neurotensin receptor 2	NM_008747|Ntsr2|18217|neurotensin receptor 2	U51908|Ntsr2|18217|neurotensin receptor 2	BC141019|Ntsr2|18217|neurotensin receptor 2	AB041826|Ntsr2|18217|neurotensin receptor 2	AB041827|Ntsr2|18217|neurotensin receptor 2
mm9_v1_chr4_+_53453302_53453555	10.8104	NHLH1,2.p2	AY249865|Slc44a1|100434|solute carrier family 44, member 1	BC113167|Slc44a1|100434|solute carrier family 44, member 1	BC113169|Slc44a1|100434|solute carrier family 44, member 1	AY249866|Slc44a1|100434|solute carrier family 44, member 1
mm9_v1_chrX_+_162676903_162676907	10.7566	NHLH1,2.p2	AF254871|Gpm6b|14758|glycoprotein m6b	AF254876|Gpm6b|14758|glycoprotein m6b	AF254877|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr17_+_44215761_44215847	10.7287	NHLH1,2.p2	NM_032003|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	NM_001168620|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	AK032341|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	AF233377|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	BC089320|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5
mm9_v1_chr16_-_85173851_85173917	10.7274	NHLH1,2.p2	X59379|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr15_+_78744328_78744471	10.6527	NHLH1,2.p2	BC049107|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	NM_020271|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	AY366300|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	AK043228|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	BC046955|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	AB041662|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase
mm9_v1_chr16_-_85173918_85173926	10.5795	NHLH1,2.p2	AK161976|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr12_+_16660521_16660569	10.5766	NHLH1,2.p2	AK081073|Ntsr2|18217|neurotensin receptor 2	AK005368|Ntsr2|18217|neurotensin receptor 2
mm9_v1_chr9_+_103014279_103014299	10.5589	NHLH1,2.p2	AK082732|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr9_-_75458865_75458907	10.5388	NHLH1,2.p2	AF237629|Tmod2|50876|tropomodulin 2
mm9_v1_chr16_-_4419586_4419636	10.5026	NHLH1,2.p2	NM_009624|Adcy9|11515|adenylate cyclase 9	Z50190|Adcy9|11515|adenylate cyclase 9
mm9_v1_chr17_+_44215851_44215893	10.4346	NHLH1,2.p2	AK220510|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	BC138977|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	BC138978|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	BC145484|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5
mm9_v1_chr2_+_90729768_90729873	10.4298	NHLH1,2.p2	AK004340|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4
mm9_v1_chr6_+_115085096_115085107	10.3665	NHLH1,2.p2	BC066004|Syn2|20965|synapsin II	BC085129|Syn2|20965|synapsin II
mm9_v1_chr4_+_129662110_129662138	10.3391	NHLH1,2.p2	AK147485|Bai2|230775|brain-specific angiogenesis inhibitor 2
mm9_v1_chr9_-_35365985_35366129	10.2907	NHLH1,2.p2	AF142630|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	BC024852|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	BC061130|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	AK078340|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	AK050693|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	NM_013932|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25
mm9_v1_chr5_+_137506122_137506164	10.2245	NHLH1,2.p2	NM_001039385|Vgf|381677|VGF nerve growth factor inducible
mm9_v1_chr17_-_25073897_25073943	10.206	NHLH1,2.p2	BC068312|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AB005662|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AF262046|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AF178637|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	BC065105|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163447|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163448|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163449|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163450|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163451|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163453|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_013931|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3
mm9_v1_chr4_+_129985957_129986021	10.2007	NHLH1,2.p2	AK142156|Fabp3|14077|fatty acid binding protein 3, muscle and heart	BC089542|Fabp3|14077|fatty acid binding protein 3, muscle and heart	BC002082|Fabp3|14077|fatty acid binding protein 3, muscle and heart	X14961|Fabp3|14077|fatty acid binding protein 3, muscle and heart	NM_010174|Fabp3|14077|fatty acid binding protein 3, muscle and heart	U02883|Fabp3|14077|fatty acid binding protein 3, muscle and heart
mm9_v1_chr9_+_69137694_69137758	10.1995	NHLH1,2.p2	AK155827|Rora|19883|RAR-related orphan receptor alpha	BC003757|Rora|19883|RAR-related orphan receptor alpha	S82720|Rora|19883|RAR-related orphan receptor alpha	AK149294|Rora|19883|RAR-related orphan receptor alpha
mm9_v1_chr16_-_85173944_85173969	10.1897	NHLH1,2.p2	AK159245|App|11820|amyloid beta (A4) precursor protein	BC070409|App|11820|amyloid beta (A4) precursor protein	AK133639|App|11820|amyloid beta (A4) precursor protein	AK159352|App|11820|amyloid beta (A4) precursor protein	AK030583|App|11820|amyloid beta (A4) precursor protein	AK128971|App|11820|amyloid beta (A4) precursor protein	NM_001198823|App|11820|amyloid beta (A4) precursor protein	NM_001198824|App|11820|amyloid beta (A4) precursor protein	NM_001198825|App|11820|amyloid beta (A4) precursor protein	NM_001198826|App|11820|amyloid beta (A4) precursor protein	NM_007471|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr15_+_81641869_81641976	10.0931	NHLH1,2.p2	AK145125|Tef|21685|thyrotroph embryonic factor	AK154472|Tef|21685|thyrotroph embryonic factor	BC036982|Tef|21685|thyrotroph embryonic factor	AF194420|Tef|21685|thyrotroph embryonic factor	AK147965|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr14_-_55531726_55531986	10.0925	NHLH1,2.p2	BC062878|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AB012808|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AK007059|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	BC005727|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AK163116|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	NM_021551|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17
mm9_v1_chr5_-_17866110_17866320	10.0612	NHLH1,2.p2	BC138862|Gnai1|14677|guanine nucleotide binding protein (G protein), alpha inhibiting 1	BC138865|Gnai1|14677|guanine nucleotide binding protein (G protein), alpha inhibiting 1	BC032995|Gnai1|14677|guanine nucleotide binding protein (G protein), alpha inhibiting 1	NM_010305|Gnai1|14677|guanine nucleotide binding protein (G protein), alpha inhibiting 1
mm9_v1_chr5_+_34326081_34326346	10.0576	NHLH1,2.p2	BC147444|Gm1673|381633|predicted gene 1673	BC147468|Gm1673|381633|predicted gene 1673	BC048625|Gm1673|381633|predicted gene 1673	AK141724|Gm1673|381633|predicted gene 1673	NM_001033458|Gm1673|381633|predicted gene 1673	BC100514|Gm1673|381633|predicted gene 1673	BC055794|Gm1673|381633|predicted gene 1673	AK131594|Gm1673|381633|predicted gene 1673
mm9_v1_chr12_+_70994091_70994091	10.0465	NHLH1,2.p2	NM_178628|Atl1|73991|atlastin GTPase 1
mm9_v1_chr17_+_25854439_25854493	9.92373	NHLH1,2.p2	AB030194|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13	BC048431|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13	BC059712|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13
mm9_v1_chr4_-_139802683_139802745	9.87627	NHLH1,2.p2	BC055811|Igsf21|230868|immunoglobin superfamily, member 21	AK137439|Igsf21|230868|immunoglobin superfamily, member 21	NM_198610|Igsf21|230868|immunoglobin superfamily, member 21
mm9_v1_chr7_+_129432810_129432849	9.87477	NHLH1,2.p2	X53532|Prkcb|18751|protein kinase C, beta	BC127083|Prkcb|18751|protein kinase C, beta	X59274|Prkcb|18751|protein kinase C, beta
mm9_v1_chr11_+_101017307_101017403	9.82656	NHLH1,2.p2	BC051439|Tubg2|103768|tubulin, gamma 2	AB158481|Tubg2|103768|tubulin, gamma 2
mm9_v1_chrX_-_56387565_56387612	9.80799	NHLH1,2.p2	BC018238|Fgf13|14168|fibroblast growth factor 13	NM_010200|Fgf13|14168|fibroblast growth factor 13
mm9_v1_chr19_-_7292009_7292055	9.8069	NHLH1,2.p2	BC120708|Cox8a|12868|cytochrome c oxidase, subunit VIIIa	BC120710|Cox8a|12868|cytochrome c oxidase, subunit VIIIa	U37721|Cox8a|12868|cytochrome c oxidase, subunit VIIIa	AK002524|Cox8a|12868|cytochrome c oxidase, subunit VIIIa	AK008594|Cox8a|12868|cytochrome c oxidase, subunit VIIIa
mm9_v1_chr4_+_155068566_155068580	9.71422	NHLH1,2.p2	AK047240|B930041F14Rik|230991|RIKEN cDNA B930041F14 gene	NM_178699|B930041F14Rik|230991|RIKEN cDNA B930041F14 gene
mm9_v1_chr16_-_4419805_4419869	9.69017	NHLH1,2.p2	U30602|Adcy9|11515|adenylate cyclase 9
mm9_v1_chrX_-_20498021_20498157	9.67767	NHLH1,2.p2	BC022954|Syn1|20964|synapsin I	NM_001110780|Syn1|20964|synapsin I	NM_013680|Syn1|20964|synapsin I
mm9_v1_chr13_-_25029458_25029547	9.65556	NHLH1,2.p2	AK051603|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	BC138703|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK159485|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK166313|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK144030|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK052703|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	NM_172532|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1
mm9_v1_chr8_-_113917651_113917728	9.63915	NHLH1,2.p2	AY660882|Fa2h|338521|fatty acid 2-hydroxylase	BC046985|Fa2h|338521|fatty acid 2-hydroxylase	BC111912|Fa2h|338521|fatty acid 2-hydroxylase	BC128080|Fa2h|338521|fatty acid 2-hydroxylase	BC128081|Fa2h|338521|fatty acid 2-hydroxylase	AK090338|Fa2h|338521|fatty acid 2-hydroxylase	AK033736|Fa2h|338521|fatty acid 2-hydroxylase	AK161502|Fa2h|338521|fatty acid 2-hydroxylase	NM_178086|Fa2h|338521|fatty acid 2-hydroxylase
mm9_v1_chr7_+_19876447_19876478	9.58215	NHLH1,2.p2	NM_001025364|Rtn2|20167|reticulon 2 (Z-band associated protein)	AK160500|Rtn2|20167|reticulon 2 (Z-band associated protein)	AF038539|Rtn2|20167|reticulon 2 (Z-band associated protein)
mm9_v1_chr2_+_132607013_132607168	9.54712	NHLH1,2.p2	AK158857|Chgb|12653|chromogranin B	NM_007694|Chgb|12653|chromogranin B
mm9_v1_chr16_-_85173978_85173998	9.48198	NHLH1,2.p2	AK147543|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr17_+_69506165_69506202	9.47453	NHLH1,2.p2	BC152368|Epb4.1l3|13823|erythrocyte protein band 4.1-like 3	BC152548|Epb4.1l3|13823|erythrocyte protein band 4.1-like 3
mm9_v1_chr13_+_64263131_64263227	9.41918	NHLH1,2.p2	AK016800|Habp4|56541|hyaluronic acid binding protein 4	BC082806|Habp4|56541|hyaluronic acid binding protein 4	NM_019986|Habp4|56541|hyaluronic acid binding protein 4	AK144206|Habp4|56541|hyaluronic acid binding protein 4	AK146525|Habp4|56541|hyaluronic acid binding protein 4	AF227684|Habp4|56541|hyaluronic acid binding protein 4
mm9_v1_chr10_-_108447674_108447736	9.40773	NHLH1,2.p2	BC042519|Syt1|20979|synaptotagmin I	NM_009306|Syt1|20979|synaptotagmin I
mm9_v1_chr15_-_33617572_33617639	9.31987	NHLH1,2.p2	AK087510|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	AK173253|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	BC079547|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	NM_001085421|Tspyl5|239364|testis-specific protein, Y-encoded-like 5
mm9_v1_chr18_+_82754377_82754564	9.30882	NHLH1,2.p2	AK002947|Mbp|17196|myelin basic protein	AK203705|Mbp|17196|myelin basic protein	AK194025|Mbp|17196|myelin basic protein
mm9_v1_chr4_+_155068450_155068511	9.1685	NHLH1,2.p2	AK046537|B930041F14Rik|230991|RIKEN cDNA B930041F14 gene
mm9_v1_chr16_-_20621287_20621552	9.12149	NHLH1,2.p2	AK013788|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147550|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147736|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147745|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC157896|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	NM_028420|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2
mm9_v1_chr7_-_13623158_13623326	9.11494	NHLH1,2.p2	BC021792|Ube2m|22192|ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast)	NM_145578|Ube2m|22192|ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast)
mm9_v1_chr15_-_98638348_98638375	8.94929	NHLH1,2.p2	AK158894|Ddn|13199|dendrin	NM_001013741|Ddn|13199|dendrin
mm9_v1_chr7_+_64846528_64846556	8.94092	NHLH1,2.p2	AK083051|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	NM_008071|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm9_v1_chr18_+_82723854_82723899	8.85864	NHLH1,2.p2	NM_001025251|Mbp|17196|myelin basic protein	NM_001025255|Mbp|17196|myelin basic protein	NM_001025256|Mbp|17196|myelin basic protein	NM_001025258|Mbp|17196|myelin basic protein	NM_001025259|Mbp|17196|myelin basic protein	AK079621|Mbp|17196|myelin basic protein	NM_001025254|Mbp|17196|myelin basic protein
mm9_v1_chr16_+_91270009_91270054	8.81762	NHLH1,2.p2	NM_016968|Olig1|50914|oligodendrocyte transcription factor 1	AK144435|Olig1|50914|oligodendrocyte transcription factor 1	AB038696|Olig1|50914|oligodendrocyte transcription factor 1	BC046316|Olig1|50914|oligodendrocyte transcription factor 1
mm9_v1_chr8_-_41720091_41720170	8.78843	NHLH1,2.p2	AK028160|Mtmr7|54384|myotubularin related protein 7	AK081973|Mtmr7|54384|myotubularin related protein 7	BC032254|Mtmr7|54384|myotubularin related protein 7	AK148768|Mtmr7|54384|myotubularin related protein 7	NM_001040699|Mtmr7|54384|myotubularin related protein 7
mm9_v1_chr2_+_25258568_25258631	8.77868	NHLH1,2.p2	BC003320|Npdc1|18146|neural proliferation, differentiation and control gene 1	NM_008721|Npdc1|18146|neural proliferation, differentiation and control gene 1
mm9_v1_chr10_+_77315603_77315603	8.76585	NHLH1,2.p2	NM_001162944|Gm10318|622629|predicted gene 10318
mm9_v1_chr3_+_138405156_138405310	8.71983	NHLH1,2.p2	NM_019571|Tspan5|56224|tetraspanin 5	AF121344|Tspan5|56224|tetraspanin 5	AK013350|Tspan5|56224|tetraspanin 5	BC058695|Tspan5|56224|tetraspanin 5	BC046784|Tspan5|56224|tetraspanin 5
mm9_v1_chr4_-_91066674_91066674	8.69157	NHLH1,2.p2	BC049125|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	BC058393|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207685|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr2_-_148558110_148558202	8.6468	NHLH1,2.p2	AK078224|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	BC038362|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	AK083184|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	NM_019632|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	BC049874|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta
mm9_v1_chr15_+_30102306_30102347	8.63661	NHLH1,2.p2	NM_008729|Ctnnd2|18163|catenin (cadherin associated protein), delta 2	U90331|Ctnnd2|18163|catenin (cadherin associated protein), delta 2
mm9_v1_chr4_-_124527811_124527973	8.58988	NHLH1,2.p2	NM_001142727|1110065P20Rik|68920|RIKEN cDNA 1110065P20 gene
mm9_v1_chr11_-_86887549_86887638	8.57036	NHLH1,2.p2	BC016541|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1	AK011487|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1	AK013864|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1	AK016023|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1	AK167812|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1	NM_025638|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1
mm9_v1_chr18_+_82723907_82723917	8.5516	NHLH1,2.p2	AK147966|Mbp|17196|myelin basic protein
mm9_v1_chr3_+_31048841_31049071	8.50289	NHLH1,2.p2	NM_008770|Cldn11|18417|claudin 11	AK005088|Cldn11|18417|claudin 11	AK005171|Cldn11|18417|claudin 11	AK161698|Cldn11|18417|claudin 11	BC021659|Cldn11|18417|claudin 11	U19582|Cldn11|18417|claudin 11	AF124426|Cldn11|18417|claudin 11
mm9_v1_chr3_+_7366586_7366727	8.44551	NHLH1,2.p2	NM_008862|Pkia|18767|protein kinase inhibitor, alpha	BC048244|Pkia|18767|protein kinase inhibitor, alpha	AK139347|Pkia|18767|protein kinase inhibitor, alpha
mm9_v1_chr7_-_52230091_52230104	8.3057	NHLH1,2.p2	AK087747|Cpt1c|78070|carnitine palmitoyltransferase 1c	BC083317|Cpt1c|78070|carnitine palmitoyltransferase 1c
mm9_v1_chr7_-_52230117_52230178	8.24807	NHLH1,2.p2	AF320000|Cpt1c|78070|carnitine palmitoyltransferase 1c	NM_153679|Cpt1c|78070|carnitine palmitoyltransferase 1c	BC066155|Cpt1c|78070|carnitine palmitoyltransferase 1c
mm9_v1_chr18_+_82753560_82753917	8.22497	NHLH1,2.p2	AK205832|Mbp|17196|myelin basic protein	AK195683|Mbp|17196|myelin basic protein	AK198099|Mbp|17196|myelin basic protein
mm9_v1_chr9_+_69137659_69137691	8.22232	NHLH1,2.p2	Z82994|Rora|19883|RAR-related orphan receptor alpha
mm9_v1_chr9_-_86775282_86775289	8.20095	NHLH1,2.p2	BC052454|Snap91|20616|synaptosomal-associated protein 91
mm9_v1_chr7_-_31911754_31911789	8.1984	NHLH1,2.p2	U85786|Scn1b|20266|sodium channel, voltage-gated, type I, beta
mm9_v1_chr2_-_130468507_130468540	8.18118	NHLH1,2.p2	AK161711|Prosapip1|241638|ProSAPiP1 protein	AK148251|Prosapip1|241638|ProSAPiP1 protein	NM_197945|Prosapip1|241638|ProSAPiP1 protein
mm9_v1_chr11_-_4847968_4848115	8.16977	NHLH1,2.p2	AK122388|Nefh|380684|neurofilament, heavy polypeptide	NM_010904|Nefh|380684|neurofilament, heavy polypeptide	M35131|Nefh|380684|neurofilament, heavy polypeptide
mm9_v1_chr14_-_119324535_119324628	8.14414	NHLH1,2.p2	AK141247|Dzip1|66573|DAZ interacting protein 1	BC098211|Dzip1|66573|DAZ interacting protein 1
mm9_v1_chr10_+_98377759_98377828	8.13621	NHLH1,2.p2	AK133920|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	NM_026482|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	AK170163|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	BC024831|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	AK170926|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chr14_-_46277274_46277306	8.0899	NHLH1,2.p2	AK048690|Ddhd1|114874|DDHD domain containing 1
mm9_v1_chr2_-_156817751_156817861	8.01451	NHLH1,2.p2	AK002272|Ndrg3|29812|N-myc downstream regulated gene 3	AB033922|Ndrg3|29812|N-myc downstream regulated gene 3	BC018504|Ndrg3|29812|N-myc downstream regulated gene 3	AK036277|Ndrg3|29812|N-myc downstream regulated gene 3	AK037487|Ndrg3|29812|N-myc downstream regulated gene 3	AK029378|Ndrg3|29812|N-myc downstream regulated gene 3	AK004689|Ndrg3|29812|N-myc downstream regulated gene 3	AK154927|Ndrg3|29812|N-myc downstream regulated gene 3	NM_013865|Ndrg3|29812|N-myc downstream regulated gene 3	NM_180956|Ndrg3|29812|N-myc downstream regulated gene 3
mm9_v1_chr4_+_155068604_155068624	7.99205	NHLH1,2.p2	AK048841|B930041F14Rik|230991|RIKEN cDNA B930041F14 gene	BC147231|B930041F14Rik|230991|RIKEN cDNA B930041F14 gene	BC147232|B930041F14Rik|230991|RIKEN cDNA B930041F14 gene
mm9_v1_chr6_-_77929543_77929562	7.98388	NHLH1,2.p2	BC051995|Ctnna2|12386|catenin (cadherin associated protein), alpha 2	AK035033|Ctnna2|12386|catenin (cadherin associated protein), alpha 2
mm9_v1_chr17_+_87506971_87507037	7.91668	NHLH1,2.p2	BC053015|Socs5|56468|suppressor of cytokine signaling 5	NM_019654|Socs5|56468|suppressor of cytokine signaling 5	AK135099|Socs5|56468|suppressor of cytokine signaling 5
mm9_v1_chr17_+_24641034_24641180	7.88725	NHLH1,2.p2	AK049987|Caskin1|268932|CASK interacting protein 1
mm9_v1_chr9_-_86775154_86775279	7.85967	NHLH1,2.p2	M83985|Snap91|20616|synaptosomal-associated protein 91	NM_013669|Snap91|20616|synaptosomal-associated protein 91	BC031773|Snap91|20616|synaptosomal-associated protein 91	AK159570|Snap91|20616|synaptosomal-associated protein 91	AK147087|Snap91|20616|synaptosomal-associated protein 91
mm9_v1_chr19_+_4855128_4855169	7.85849	NHLH1,2.p2	NM_019861|Ctsf|56464|cathepsin F	AK165416|Ctsf|56464|cathepsin F
mm9_v1_chr1_-_46910333_46910455	7.82813	NHLH1,2.p2	BC062918|Slc39a10|227059|solute carrier family 39 (zinc transporter), member 10	NM_172653|Slc39a10|227059|solute carrier family 39 (zinc transporter), member 10	BC052880|Slc39a10|227059|solute carrier family 39 (zinc transporter), member 10
mm9_v1_chr1_+_160292470_160292548	7.81782	NHLH1,2.p2	AK164117|Astn1|11899|astrotactin 1	NM_007495|Astn1|11899|astrotactin 1	BC094666|Astn1|11899|astrotactin 1
mm9_v1_chr7_-_52230179_52230183	7.78597	NHLH1,2.p2	AK035790|Cpt1c|78070|carnitine palmitoyltransferase 1c
mm9_v1_chr8_-_75877407_75877449	7.78056	NHLH1,2.p2	AK122328|Large|16795|like-glycosyltransferase
mm9_v1_chr11_-_74424353_74424416	7.7158	NHLH1,2.p2	AK147290|Rap1gap2|380711|RAP1 GTPase activating protein 2
mm9_v1_chr8_-_87461251_87461273	7.711	NHLH1,2.p2	BC054524|Mast1|56527|microtubule associated serine/threonine kinase 1	NM_019945|Mast1|56527|microtubule associated serine/threonine kinase 1	AK141034|Mast1|56527|microtubule associated serine/threonine kinase 1
mm9_v1_chr17_+_74154214_74154436	7.70456	NHLH1,2.p2	AK051717|Ehd3|57440|EH-domain containing 3	AF506002|Ehd3|57440|EH-domain containing 3	BC046596|Ehd3|57440|EH-domain containing 3
mm9_v1_chr18_+_82754829_82754843	7.68952	NHLH1,2.p2	AK193989|Mbp|17196|myelin basic protein	AK198113|Mbp|17196|myelin basic protein	AK200233|Mbp|17196|myelin basic protein	AK200632|Mbp|17196|myelin basic protein	AK201435|Mbp|17196|myelin basic protein	AK201834|Mbp|17196|myelin basic protein	AK202354|Mbp|17196|myelin basic protein	AK209511|Mbp|17196|myelin basic protein
mm9_v1_chr8_-_48374755_48374779	7.68383	NHLH1,2.p2	AK053894|Stox2|71069|storkhead box 2	NM_001114311|Stox2|71069|storkhead box 2
mm9_v1_chr14_-_46277772_46277802	7.63409	NHLH1,2.p2	AK155294|Ddhd1|114874|DDHD domain containing 1	AK170271|Ddhd1|114874|DDHD domain containing 1
mm9_v1_chr19_-_45890238_45890540	7.60083	NHLH1,2.p2	AJ278536|Kcnip2|80906|Kv channel-interacting protein 2	AJ278537|Kcnip2|80906|Kv channel-interacting protein 2	AF439339|Kcnip2|80906|Kv channel-interacting protein 2	AF439340|Kcnip2|80906|Kv channel-interacting protein 2	AF439341|Kcnip2|80906|Kv channel-interacting protein 2	DQ148496|Kcnip2|80906|Kv channel-interacting protein 2	DQ148497|Kcnip2|80906|Kv channel-interacting protein 2	DQ148498|Kcnip2|80906|Kv channel-interacting protein 2	NM_030716|Kcnip2|80906|Kv channel-interacting protein 2	NM_145703|Kcnip2|80906|Kv channel-interacting protein 2	NM_145704|Kcnip2|80906|Kv channel-interacting protein 2	BC132215|Kcnip2|80906|Kv channel-interacting protein 2	BC138496|Kcnip2|80906|Kv channel-interacting protein 2	BC056434|Kcnip2|80906|Kv channel-interacting protein 2
mm9_v1_chr11_-_59263437_59263506	7.55115	NHLH1,2.p2	BC023182|Snap47|67826|synaptosomal-associated protein, 47	NM_144521|Snap47|67826|synaptosomal-associated protein, 47	BC029025|Snap47|67826|synaptosomal-associated protein, 47	AK028053|Snap47|67826|synaptosomal-associated protein, 47	AK081883|Snap47|67826|synaptosomal-associated protein, 47	AK075640|Snap47|67826|synaptosomal-associated protein, 47	AK049330|Snap47|67826|synaptosomal-associated protein, 47
mm9_v1_chr7_+_17530050_17530063	7.52886	NHLH1,2.p2	AK143183|Pnmal2|434128|PNMA-like 2
mm9_v1_chr15_+_74394184_74394274	7.52735	NHLH1,2.p2	AK046831|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr6_-_92484838_92484854	7.52603	NHLH1,2.p2	AK147576|Prickle2|243548|prickle homolog 2 (Drosophila)	AK147628|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134459|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr2_+_3035629_3035684	7.50103	NHLH1,2.p2	NM_001081161|Fam171a1|269233|family with sequence similarity 171, member A1	AK032237|Fam171a1|269233|family with sequence similarity 171, member A1
mm9_v1_chr1_-_166388431_166388540	7.49393	NHLH1,2.p2	AK010677|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	NM_009721|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr9_-_75458954_75458978	7.42933	NHLH1,2.p2	AK079077|Tmod2|50876|tropomodulin 2	AK164178|Tmod2|50876|tropomodulin 2
mm9_v1_chr13_+_48356795_48356817	7.3703	NHLH1,2.p2	NM_031166|Id4|15904|inhibitor of DNA binding 4	X75018|Id4|15904|inhibitor of DNA binding 4	BC145367|Id4|15904|inhibitor of DNA binding 4
mm9_v1_chr17_+_46390828_46391138	7.35568	NHLH1,2.p2	AK134769|Gm88|224813|predicted gene 88	NM_001111142|Gm88|224813|predicted gene 88	BC147714|Gm88|224813|predicted gene 88	BC172136|Gm88|224813|predicted gene 88
mm9_v1_chr7_+_17529961_17530046	7.35238	NHLH1,2.p2	AK140282|Pnmal2|434128|PNMA-like 2	NM_001099636|Pnmal2|434128|PNMA-like 2
mm9_v1_chr2_+_164312087_164312169	7.34548	NHLH1,2.p2	AK013571|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr17_+_43938887_43938898	7.33292	NHLH1,2.p2	AK138768|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr17_-_37160143_37160232	7.29594	NHLH1,2.p2	AY566830|Mog|17441|myelin oligodendrocyte glycoprotein	BC080860|Mog|17441|myelin oligodendrocyte glycoprotein	U64572|Mog|17441|myelin oligodendrocyte glycoprotein	BC050763|Mog|17441|myelin oligodendrocyte glycoprotein	AK135036|Mog|17441|myelin oligodendrocyte glycoprotein
mm9_v1_chr19_+_47089736_47089849	7.29589	NHLH1,2.p2	AK144917|Ina|226180|internexin neuronal intermediate filament protein, alpha
mm9_v1_chr2_+_25258653_25258768	7.29221	NHLH1,2.p2	AK146466|Npdc1|18146|neural proliferation, differentiation and control gene 1	L03814|Npdc1|18146|neural proliferation, differentiation and control gene 1	X67209|Npdc1|18146|neural proliferation, differentiation and control gene 1
mm9_v1_chr2_+_157387284_157387395	7.22466	NHLH1,2.p2	AY644389|Nnat|18111|neuronatin
mm9_v1_chr3_+_14886253_14886451	7.22408	NHLH1,2.p2	NM_009801|Car2|12349|carbonic anhydrase 2	U37705|Car2|12349|carbonic anhydrase 2
mm9_v1_chr4_-_154719834_154719909	7.21779	NHLH1,2.p2	AB110830|Prkcz|18762|protein kinase C, zeta	AK042562|Prkcz|18762|protein kinase C, zeta	AK049959|Prkcz|18762|protein kinase C, zeta	NM_001039079|Prkcz|18762|protein kinase C, zeta	BC072590|Prkcz|18762|protein kinase C, zeta
mm9_v1_chr9_+_106356125_106356294	7.19822	NHLH1,2.p2	NM_021567|Pcbp4|59092|poly(rC) binding protein 4	AK004580|Pcbp4|59092|poly(rC) binding protein 4	AK005383|Pcbp4|59092|poly(rC) binding protein 4	AK077632|Pcbp4|59092|poly(rC) binding protein 4	AK082005|Pcbp4|59092|poly(rC) binding protein 4	BC010694|Pcbp4|59092|poly(rC) binding protein 4	AF176328|Pcbp4|59092|poly(rC) binding protein 4
mm9_v1_chr2_+_97306600_97306623	7.18493	NHLH1,2.p2	
mm9_v1_chr6_-_77929685_77929694	7.18078	NHLH1,2.p2	AK158916|Ctnna2|12386|catenin (cadherin associated protein), alpha 2
mm9_v1_chr11_-_120645428_120645541	7.17216	NHLH1,2.p2	AF015770|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	AK004573|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	U94350|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	BC066023|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	NM_009053|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm9_v1_chr15_-_58654964_58655084	7.13199	NHLH1,2.p2	BC096426|Tmem65|74868|transmembrane protein 65	NM_175212|Tmem65|74868|transmembrane protein 65	AK031886|Tmem65|74868|transmembrane protein 65	AK015335|Tmem65|74868|transmembrane protein 65
mm9_v1_chr17_+_74154180_74154211	7.11659	NHLH1,2.p2	AK141265|Ehd3|57440|EH-domain containing 3	NM_020578|Ehd3|57440|EH-domain containing 3	AK128964|Ehd3|57440|EH-domain containing 3	AF155883|Ehd3|57440|EH-domain containing 3
mm9_v1_chr13_-_25361773_25361915	7.10111	NHLH1,2.p2	AK138191|Nrsn1|22360|neurensin 1	D83206|Nrsn1|22360|neurensin 1	AK160941|Nrsn1|22360|neurensin 1	NM_009513|Nrsn1|22360|neurensin 1
mm9_v1_chr4_-_57002965_57003009	7.00164	NHLH1,2.p2	AK038461|6430704M03Rik|230235|RIKEN cDNA 6430704M03 gene	AK078331|6430704M03Rik|230235|RIKEN cDNA 6430704M03 gene
mm9_v1_chr16_+_17276384_17276419	6.99	NHLH1,2.p2	NM_177473|Tmem191c|224019|transmembrane protein 191C	AK016675|Tmem191c|224019|transmembrane protein 191C
mm9_v1_chr18_-_60783889_60783905	6.98772	NHLH1,2.p2	AK158933|Synpo|104027|synaptopodin	AK171288|Synpo|104027|synaptopodin
mm9_v1_chr6_+_107479719_107479841	6.98054	NHLH1,2.p2	AK139965|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK139355|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK164849|Lrrn1|16979|leucine rich repeat protein 1, neuronal	D45913|Lrrn1|16979|leucine rich repeat protein 1, neuronal	NM_008516|Lrrn1|16979|leucine rich repeat protein 1, neuronal	BC058701|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK160841|Lrrn1|16979|leucine rich repeat protein 1, neuronal
mm9_v1_chr14_-_46277816_46277821	6.96427	NHLH1,2.p2	DQ272481|Ddhd1|114874|DDHD domain containing 1	DQ272482|Ddhd1|114874|DDHD domain containing 1	NM_001039106|Ddhd1|114874|DDHD domain containing 1	NM_001042719|Ddhd1|114874|DDHD domain containing 1	NM_176845|Ddhd1|114874|DDHD domain containing 1
mm9_v1_chr19_+_10525829_10525836	6.96106	NHLH1,2.p2	
mm9_v1_chrX_+_100551808_100551914	6.93636	NHLH1,2.p2	NM_009767|Chic1|12212|cysteine-rich hydrophobic domain 1	AK034427|Chic1|12212|cysteine-rich hydrophobic domain 1	AK135974|Chic1|12212|cysteine-rich hydrophobic domain 1	Y11896|Chic1|12212|cysteine-rich hydrophobic domain 1	BC132322|Chic1|12212|cysteine-rich hydrophobic domain 1	BC138730|Chic1|12212|cysteine-rich hydrophobic domain 1	AK013993|Chic1|12212|cysteine-rich hydrophobic domain 1
mm9_v1_chr5_+_27143896_27143973	6.91669	NHLH1,2.p2	AF092507|Dpp6|13483|dipeptidylpeptidase 6	NM_010075|Dpp6|13483|dipeptidylpeptidase 6	AK082186|Dpp6|13483|dipeptidylpeptidase 6
mm9_v1_chr4_+_53453277_53453295	6.91268	NHLH1,2.p2	AK077951|Slc44a1|100434|solute carrier family 44, member 1	NM_001159633|Slc44a1|100434|solute carrier family 44, member 1	NM_133891|Slc44a1|100434|solute carrier family 44, member 1
mm9_v1_chr4_+_137280366_137280389	6.90939	NHLH1,2.p2	AK005063|Rap1gap|110351|Rap1 GTPase-activating protein
mm9_v1_chr15_+_34167780_34167904	6.9003	NHLH1,2.p2	NM_033521|Laptm4b|114128|lysosomal-associated protein transmembrane 4B	AK077933|Laptm4b|114128|lysosomal-associated protein transmembrane 4B	EU561010|Laptm4b|114128|lysosomal-associated protein transmembrane 4B	AK166014|Laptm4b|114128|lysosomal-associated protein transmembrane 4B	AK082807|Laptm4b|114128|lysosomal-associated protein transmembrane 4B	AK146868|Laptm4b|114128|lysosomal-associated protein transmembrane 4B
mm9_v1_chr4_-_124527556_124527622	6.89676	NHLH1,2.p2	AK021268|1110065P20Rik|68920|RIKEN cDNA 1110065P20 gene	AK004382|1110065P20Rik|68920|RIKEN cDNA 1110065P20 gene
mm9_v1_chr3_+_145421621_145421769	6.89257	NHLH1,2.p2	AK143507|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	AK148907|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	NM_026993|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	AK010430|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	BC034505|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1
mm9_v1_chr11_+_101017197_101017233	6.87547	NHLH1,2.p2	NM_134028|Tubg2|103768|tubulin, gamma 2	BC019652|Tubg2|103768|tubulin, gamma 2	BC078446|Tubg2|103768|tubulin, gamma 2
mm9_v1_chr16_-_44139087_44139164	6.8513	NHLH1,2.p2	AK140873|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	BC038392|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK150742|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK166857|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK149833|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK153403|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK154869|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK160792|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK170721|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	NM_007508|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A
mm9_v1_chr13_-_12199109_12199211	6.83181	NHLH1,2.p2	BC043140|Ryr2|20191|ryanodine receptor 2, cardiac	BC059061|Ryr2|20191|ryanodine receptor 2, cardiac	NM_023868|Ryr2|20191|ryanodine receptor 2, cardiac
mm9_v1_chr7_+_72789752_72789811	6.80921	NHLH1,2.p2	AK044290|Tarsl2|272396|threonyl-tRNA synthetase-like 2	NM_172310|Tarsl2|272396|threonyl-tRNA synthetase-like 2	AK041280|Tarsl2|272396|threonyl-tRNA synthetase-like 2	BC039225|Tarsl2|272396|threonyl-tRNA synthetase-like 2	AK079416|Tarsl2|272396|threonyl-tRNA synthetase-like 2	AK040927|Tarsl2|272396|threonyl-tRNA synthetase-like 2
mm9_v1_chr2_+_31951149_31951239	6.79779	NHLH1,2.p2	AK052883|Ppapdc3|227721|phosphatidic acid phosphatase type 2 domain containing 3	NM_145521|Ppapdc3|227721|phosphatidic acid phosphatase type 2 domain containing 3	BC016136|Ppapdc3|227721|phosphatidic acid phosphatase type 2 domain containing 3
mm9_v1_chr16_+_6349108_6349144	6.7945	NHLH1,2.p2	AK134833|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr17_-_37160241_37160342	6.71356	NHLH1,2.p2	AK013504|Mog|17441|myelin oligodendrocyte glycoprotein	NM_010814|Mog|17441|myelin oligodendrocyte glycoprotein
mm9_v1_chr15_+_34167908_34168078	6.71218	NHLH1,2.p2	AK077269|Laptm4b|114128|lysosomal-associated protein transmembrane 4B	AK079581|Laptm4b|114128|lysosomal-associated protein transmembrane 4B	BC019120|Laptm4b|114128|lysosomal-associated protein transmembrane 4B	AF317418|Laptm4b|114128|lysosomal-associated protein transmembrane 4B
mm9_v1_chr17_+_43938905_43938991	6.68399	NHLH1,2.p2	AK136805|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr7_-_36340851_36340869	6.65794	NHLH1,2.p2	X04097|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19	BC138674|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19	BC138675|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19
mm9_v1_chr1_+_179372452_179372537	6.60891	NHLH1,2.p2	BC050909|Zfp238|30928|zinc finger protein 238
mm9_v1_chrX_-_70905384_70905478	6.60581	NHLH1,2.p2	BC055891|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	BC051996|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	AK158755|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase
mm9_v1_chr2_+_81893814_81893814	6.59357	NHLH1,2.p2	AK049881|Zfp804a|241514|zinc finger protein 804A	NM_175513|Zfp804a|241514|zinc finger protein 804A
mm9_v1_chr17_-_25073798_25073887	6.57016	NHLH1,2.p2	AB043123|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AB043124|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AB043125|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AF178636|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	BC060603|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AB093282|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3
mm9_v1_chr17_+_69506083_69506155	6.56434	NHLH1,2.p2	BC079858|Epb4.1l3|13823|erythrocyte protein band 4.1-like 3	AK031156|Epb4.1l3|13823|erythrocyte protein band 4.1-like 3	AF152247|Epb4.1l3|13823|erythrocyte protein band 4.1-like 3	AK053532|Epb4.1l3|13823|erythrocyte protein band 4.1-like 3	NM_013813|Epb4.1l3|13823|erythrocyte protein band 4.1-like 3
mm9_v1_chr6_-_92656148_92656177	6.5594	NHLH1,2.p2	BC099897|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001081146|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr7_+_120909625_120909653	6.5358	NHLH1,2.p2	BC020531|Spon1|233744|spondin 1, (f-spondin) extracellular matrix protein
mm9_v1_chr11_-_35612058_35612106	6.53133	NHLH1,2.p2	BC052068|Fbll1|237730|fibrillarin-like 1	AK140117|Fbll1|237730|fibrillarin-like 1
mm9_v1_chr2_-_162486882_162486956	6.53082	NHLH1,2.p2	AF244125|Ptprt|19281|protein tyrosine phosphatase, receptor type, T	NM_021464|Ptprt|19281|protein tyrosine phosphatase, receptor type, T
mm9_v1_chr11_-_35612385_35612385	6.50289	NHLH1,2.p2	NM_001004147|Fbll1|237730|fibrillarin-like 1
mm9_v1_chr2_+_164311639_164311740	6.49922	NHLH1,2.p2	NM_001048227|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr3_-_57651621_57651757	6.49632	NHLH1,2.p2	NM_019410|Pfn2|18645|profilin 2
mm9_v1_chr4_+_43460181_43460289	6.43725	NHLH1,2.p2	
mm9_v1_chr19_+_44368557_44368575	6.43518	NHLH1,2.p2	AK083922|Scd2|20250|stearoyl-Coenzyme A desaturase 2
mm9_v1_chr7_-_67149962_67150045	6.43229	NHLH1,2.p2	BC069894|Snrpn|20646|small nuclear ribonucleoprotein N	BC024880|Snrpn|20646|small nuclear ribonucleoprotein N	BC019589|Snrpn|20646|small nuclear ribonucleoprotein N	BC132082|Snurf|84704|SNRPN upstream reading frame	BC132084|Snurf|84704|SNRPN upstream reading frame	AK013607|Snrpn|20646|small nuclear ribonucleoprotein N	AK144386|Snrpn|20646|small nuclear ribonucleoprotein N	AF101042|Snurf|84704|SNRPN upstream reading frame	NM_013670|Snrpn|20646|small nuclear ribonucleoprotein N	NM_033174|Snurf|84704|SNRPN upstream reading frame
mm9_v1_chr17_+_25854116_25854176	6.36667	NHLH1,2.p2	NM_022422|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13	AK018778|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13	AY029485|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13
mm9_v1_chr11_-_101140242_101140279	6.36031	NHLH1,2.p2	AK003955|Ccdc56|52469|coiled-coil domain containing 56	BC026206|Ccdc56|52469|coiled-coil domain containing 56	AK019025|Ccdc56|52469|coiled-coil domain containing 56	NM_026618|Ccdc56|52469|coiled-coil domain containing 56
mm9_v1_chr1_+_160292665_160292848	6.29214	NHLH1,2.p2	AK147450|Astn1|11899|astrotactin 1	AK138576|Astn1|11899|astrotactin 1	AK045561|Astn1|11899|astrotactin 1	AK165200|Astn1|11899|astrotactin 1	U48797|Astn1|11899|astrotactin 1	AB093222|Astn1|11899|astrotactin 1
mm9_v1_chr7_+_52419317_52419319	6.28777	NHLH1,2.p2	AK159064|Slc17a7|72961|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
mm9_v1_chr8_-_87461220_87461246	6.28431	NHLH1,2.p2	AF077818|Mast1|56527|microtubule associated serine/threonine kinase 1
mm9_v1_chr10_-_61573705_61573762	6.2796	NHLH1,2.p2	BC024943|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene	AK008338|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene	AK035688|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene	NM_027251|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene
mm9_v1_chr7_+_138079669_138079779	6.25956	NHLH1,2.p2	NM_019564|Htra1|56213|HtrA serine peptidase 1	AK128916|Htra1|56213|HtrA serine peptidase 1	AK132270|Htra1|56213|HtrA serine peptidase 1	AF179369|Htra1|56213|HtrA serine peptidase 1	AF172994|Htra1|56213|HtrA serine peptidase 1	BC013516|Htra1|56213|HtrA serine peptidase 1
mm9_v1_chr6_-_77929575_77929581	6.24661	NHLH1,2.p2	BC079648|Ctnna2|12386|catenin (cadherin associated protein), alpha 2	D25281|Ctnna2|12386|catenin (cadherin associated protein), alpha 2	D25282|Ctnna2|12386|catenin (cadherin associated protein), alpha 2
mm9_v1_chr2_-_148701164_148701201	6.238	NHLH1,2.p2	AK161856|Cst3|13010|cystatin C	AK151160|Cst3|13010|cystatin C	AK013676|Cst3|13010|cystatin C	AK153533|Cst3|13010|cystatin C	AK166430|Cst3|13010|cystatin C
mm9_v1_chr3_-_97692613_97692634	6.23657	NHLH1,2.p2	BC028274|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	BC141185|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	BC145504|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_001039376|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr14_-_7937970_7937970	6.18374	NHLH1,2.p2	NM_001024712|Gm3696|100042149|predicted gene 3696
mm9_v1_chr11_-_103815317_103815332	6.17356	NHLH1,2.p2	AK085086|Nsf|18195|N-ethylmaleimide sensitive fusion protein	U10120|Nsf|18195|N-ethylmaleimide sensitive fusion protein
mm9_v1_chr13_-_78338131_78338242	6.17057	NHLH1,2.p2	BC108408|Nr2f1|13865|nuclear receptor subfamily 2, group F, member 1	X74134|Nr2f1|13865|nuclear receptor subfamily 2, group F, member 1	NM_010151|Nr2f1|13865|nuclear receptor subfamily 2, group F, member 1
mm9_v1_chr2_+_156439426_156439464	6.1697	NHLH1,2.p2	NM_146128|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr16_+_17276434_17276446	6.16607	NHLH1,2.p2	AB041601|Tmem191c|224019|transmembrane protein 191C
mm9_v1_chr1_-_37776633_37776680	6.16507	NHLH1,2.p2	AK039052|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene	BC072639|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene	NM_028096|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene
mm9_v1_chr2_-_170232008_170232013	6.15417	NHLH1,2.p2	AK008957|Bcas1|76960|breast carcinoma amplified sequence 1	AK031825|Bcas1|76960|breast carcinoma amplified sequence 1
mm9_v1_chr1_+_66515003_66515020	6.13993	NHLH1,2.p2	AK043914|Unc80|329178|unc-80 homolog (C. elegans)	FJ210934|Unc80|329178|unc-80 homolog (C. elegans)	NM_175510|Unc80|329178|unc-80 homolog (C. elegans)
mm9_v1_chr2_+_76244603_76244617	6.13766	NHLH1,2.p2	AK037703|Osbpl6|99031|oxysterol binding protein-like 6	AK157944|Osbpl6|99031|oxysterol binding protein-like 6	AK220498|Osbpl6|99031|oxysterol binding protein-like 6
mm9_v1_chr3_+_145421870_145422044	6.08659	NHLH1,2.p2	AK149185|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1
mm9_v1_chr2_+_177876858_177876930	6.07932	NHLH1,2.p2	BC059869|Phactr3|74189|phosphatase and actin regulator 3	AK032242|Phactr3|74189|phosphatase and actin regulator 3	AY501387|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr9_-_121905086_121905164	6.03527	NHLH1,2.p2	BC025056|C85492|215494|expressed sequence C85492	BC030931|C85492|215494|expressed sequence C85492	AK042747|C85492|215494|expressed sequence C85492	AK133802|C85492|215494|expressed sequence C85492	AK034473|C85492|215494|expressed sequence C85492	AK054403|C85492|215494|expressed sequence C85492	NM_153540|C85492|215494|expressed sequence C85492
mm9_v1_chr9_-_108469672_108469775	6.02305	NHLH1,2.p2	AF235017|Ndufaf3|66706|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	NM_023247|Ndufaf3|66706|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	BC027513|Ndufaf3|66706|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3
mm9_v1_chr10_-_32609590_32609720	6.01637	NHLH1,2.p2	BC141063|Nkain2|432450|Na+/K+ transporting ATPase interacting 2	DQ065606|Nkain2|432450|Na+/K+ transporting ATPase interacting 2	DQ065607|Nkain2|432450|Na+/K+ transporting ATPase interacting 2	EF058049|Nkain2|432450|Na+/K+ transporting ATPase interacting 2	NM_001013411|Nkain2|432450|Na+/K+ transporting ATPase interacting 2	NM_001025286|Nkain2|432450|Na+/K+ transporting ATPase interacting 2
mm9_v1_chr6_+_30688050_30688066	6.00145	NHLH1,2.p2	AK031718|Mest|17294|mesoderm specific transcript	AK032881|Mest|17294|mesoderm specific transcript	AK034949|Mest|17294|mesoderm specific transcript	AK146457|Mest|17294|mesoderm specific transcript	AK168714|Mest|17294|mesoderm specific transcript	AK168732|Mest|17294|mesoderm specific transcript	AK168743|Mest|17294|mesoderm specific transcript	AK168995|Mest|17294|mesoderm specific transcript	AK169095|Mest|17294|mesoderm specific transcript	AK169266|Mest|17294|mesoderm specific transcript	D16262|Mest|17294|mesoderm specific transcript	NM_008590|Mest|17294|mesoderm specific transcript	BC006639|Mest|17294|mesoderm specific transcript
mm9_v1_chr11_-_46125777_46125868	6.00036	NHLH1,2.p2	AK018280|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AF334144|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AK030397|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AK147971|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	BC056974|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AK147586|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	NM_133769|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2
mm9_v1_chr18_+_45719101_45719122	5.99079	NHLH1,2.p2	AK149082|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK039033|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr9_-_75459125_75459169	5.97663	NHLH1,2.p2	AK147581|Tmod2|50876|tropomodulin 2	NM_016711|Tmod2|50876|tropomodulin 2
mm9_v1_chr7_-_112730004_112730048	5.96128	NHLH1,2.p2	AK144340|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1	AK030748|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1	NM_009685|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1
mm9_v1_chr19_-_37281762_37281782	5.94386	NHLH1,2.p2	BC128377|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	AY313774|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	NM_198300|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3
mm9_v1_chr2_+_31951030_31951062	5.9318	NHLH1,2.p2	AK134638|Ppapdc3|227721|phosphatidic acid phosphatase type 2 domain containing 3
mm9_v1_chr2_-_148701203_148701269	5.93037	NHLH1,2.p2	AK002438|Cst3|13010|cystatin C	NM_009976|Cst3|13010|cystatin C	AK014368|Cst3|13010|cystatin C	AK131728|Cst3|13010|cystatin C	AK146333|Cst3|13010|cystatin C
mm9_v1_chr1_-_169323901_169323998	5.92161	NHLH1,2.p2	AK135742|Mgst3|66447|microsomal glutathione S-transferase 3	AK003309|Mgst3|66447|microsomal glutathione S-transferase 3	AK008533|Mgst3|66447|microsomal glutathione S-transferase 3	AK003476|Mgst3|66447|microsomal glutathione S-transferase 3	AK003492|Mgst3|66447|microsomal glutathione S-transferase 3	AK003246|Mgst3|66447|microsomal glutathione S-transferase 3	NM_025569|Mgst3|66447|microsomal glutathione S-transferase 3
mm9_v1_chr2_-_148700920_148700989	5.90248	NHLH1,2.p2	AK212642|Cst3|13010|cystatin C
mm9_v1_chr10_+_77298691_77298691	5.8973	NHLH1,2.p2	AK079449|Krtap10-10|544710|keratin associated protein 10-10	NM_001024709|Krtap10-10|544710|keratin associated protein 10-10
mm9_v1_chr11_-_115229039_115229044	5.88241	NHLH1,2.p2	AK138882|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene
mm9_v1_chr11_-_116274124_116274168	5.87704	NHLH1,2.p2	BC053070|Rnf157|217340|ring finger protein 157
mm9_v1_chr15_+_83610459_83610521	5.86873	NHLH1,2.p2	AK165755|Mpped1|223726|metallophosphoesterase domain containing 1
mm9_v1_chr2_+_164311755_164311970	5.83751	NHLH1,2.p2	BC030298|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2	NM_026797|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr8_-_55809700_55809720	5.81948	NHLH1,2.p2	AK013889|Wdr17|244484|WD repeat domain 17	AK020995|Wdr17|244484|WD repeat domain 17	AK044241|Wdr17|244484|WD repeat domain 17	NM_001172152|Wdr17|244484|WD repeat domain 17
mm9_v1_chr13_-_78337844_78338043	5.81434	NHLH1,2.p2	U07625|Nr2f1|13865|nuclear receptor subfamily 2, group F, member 1	BC048695|Nr2f1|13865|nuclear receptor subfamily 2, group F, member 1
mm9_v1_chr1_-_84281018_84281160	5.80462	NHLH1,2.p2	AK035542|Pid1|98496|phosphotyrosine interaction domain containing 1	AK083256|Pid1|98496|phosphotyrosine interaction domain containing 1	AK150971|Pid1|98496|phosphotyrosine interaction domain containing 1
mm9_v1_chr2_-_148701108_148701112	5.80411	NHLH1,2.p2	AF311741|Cst3|13010|cystatin C	AF483486|Cst3|13010|cystatin C	AF483487|Cst3|13010|cystatin C
mm9_v1_chr2_-_25174498_25174656	5.76116	NHLH1,2.p2	D10028|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	BC039157|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	AK158175|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	AK036204|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	AK158140|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)
mm9_v1_chr14_-_56519012_56519108	5.7347	NHLH1,2.p2	AK009339|Sdr39u1|654795|short chain dehydrogenase/reductase family 39U, member 1	BC087941|Sdr39u1|654795|short chain dehydrogenase/reductase family 39U, member 1	AK049709|Sdr39u1|654795|short chain dehydrogenase/reductase family 39U, member 1	NM_001082975|Sdr39u1|654795|short chain dehydrogenase/reductase family 39U, member 1
mm9_v1_chrX_+_91881454_91881500	5.73371	NHLH1,2.p2	BC117825|Gspt2|14853|G1 to S phase transition 2	BC117826|Gspt2|14853|G1 to S phase transition 2
mm9_v1_chr2_-_148701126_148701154	5.71663	NHLH1,2.p2	M59470|Cst3|13010|cystatin C	BC002072|Cst3|13010|cystatin C
mm9_v1_chr6_-_58857000_58857134	5.71119	NHLH1,2.p2	AB041556|Nap1l5|58243|nucleosome assembly protein 1-like 5	BC046332|Nap1l5|58243|nucleosome assembly protein 1-like 5	NM_021432|Nap1l5|58243|nucleosome assembly protein 1-like 5
mm9_v1_chr2_-_5635517_5635531	5.69943	NHLH1,2.p2	AK147657|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK162754|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID
mm9_v1_chr8_+_35217603_35217630	5.69352	NHLH1,2.p2	NM_026432|Tmem66|67887|transmembrane protein 66	AK077118|Tmem66|67887|transmembrane protein 66
mm9_v1_chr9_-_75458918_75458929	5.67178	NHLH1,2.p2	AK018223|Tmod2|50876|tropomodulin 2
mm9_v1_chr18_-_43058544_43058664	5.67002	NHLH1,2.p2	AK039592|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	BC088979|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	NM_027531|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	AK018119|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm9_v1_chr7_+_25266986_25267120	5.65361	NHLH1,2.p2	AK143204|Cadm4|260299|cell adhesion molecule 4	NM_153112|Cadm4|260299|cell adhesion molecule 4	AY059394|Cadm4|260299|cell adhesion molecule 4
mm9_v1_chr2_+_25356281_25356297	5.64726	NHLH1,2.p2	AK019715|Fbxw5|30839|F-box and WD-40 domain protein 5	NM_013908|Fbxw5|30839|F-box and WD-40 domain protein 5
mm9_v1_chr12_-_17183330_17183422	5.64369	NHLH1,2.p2	BC053089|Kcnf1|382571|potassium voltage-gated channel, subfamily F, member 1	AK137367|Kcnf1|382571|potassium voltage-gated channel, subfamily F, member 1
mm9_v1_chr6_-_115201866_115201882	5.64278	NHLH1,2.p2	AK079347|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK140367|Timp4|110595|tissue inhibitor of metalloproteinase 4	NM_080639|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr2_+_177876710_177876721	5.64094	NHLH1,2.p2	BC058621|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr7_+_52419289_52419313	5.63467	NHLH1,2.p2	NM_182993|Slc17a7|72961|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
mm9_v1_chr5_-_125342745_125342763	5.60822	NHLH1,2.p2	AK136203|Ccdc92|215707|coiled-coil domain containing 92
mm9_v1_chr19_+_44368578_44368583	5.60073	NHLH1,2.p2	AK083085|Scd2|20250|stearoyl-Coenzyme A desaturase 2
mm9_v1_chr4_-_109149274_109149287	5.58699	NHLH1,2.p2	BC028255|Rnf11|29864|ring finger protein 11
mm9_v1_chr8_+_96334879_96334940	5.57454	NHLH1,2.p2	BC051989|Gnao1|14681|guanine nucleotide binding protein, alpha O
mm9_v1_chr2_+_102498839_102498845	5.57065	NHLH1,2.p2	AK134609|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077514|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AK140095|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr11_-_120645076_120645236	5.57025	NHLH1,2.p2	AK218494|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	AK207192|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm9_v1_chr2_+_177876635_177876639	5.55865	NHLH1,2.p2	AK135144|Phactr3|74189|phosphatase and actin regulator 3	NM_028806|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr14_-_8491067_8491129	5.55684	NHLH1,2.p2	AK049619|Gm2897|100040671|predicted gene 2897
mm9_v1_chr8_-_89996474_89996540	5.55481	NHLH1,2.p2	AK158818|Cbln1|12404|cerebellin 1 precursor protein	NM_019626|Cbln1|12404|cerebellin 1 precursor protein	AK158885|Cbln1|12404|cerebellin 1 precursor protein
mm9_v1_chr9_+_110148568_110148708	5.51925	NHLH1,2.p2	AF461091|Cspg5|29873|chondroitin sulfate proteoglycan 5
mm9_v1_chr4_-_137882142_137882214	5.51843	NHLH1,2.p2	AB053476|Pink1|68943|PTEN induced putative kinase 1	BC069968|Pink1|68943|PTEN induced putative kinase 1	AK220318|Pink1|68943|PTEN induced putative kinase 1	BC018594|Pink1|68943|PTEN induced putative kinase 1	BC067066|Pink1|68943|PTEN induced putative kinase 1	AF316872|Pink1|68943|PTEN induced putative kinase 1	AK050322|Pink1|68943|PTEN induced putative kinase 1	AK165480|Pink1|68943|PTEN induced putative kinase 1	AK155474|Pink1|68943|PTEN induced putative kinase 1	NM_026880|Pink1|68943|PTEN induced putative kinase 1
mm9_v1_chr9_-_108469265_108469296	5.51459	NHLH1,2.p2	AK005252|Ndufaf3|66706|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	AK014634|Ndufaf3|66706|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3
mm9_v1_chr3_-_80717517_80717574	5.48141	NHLH1,2.p2	BC027094|Glrb|14658|glycine receptor, beta subunit	BC037605|Glrb|14658|glycine receptor, beta subunit	NM_010298|Glrb|14658|glycine receptor, beta subunit
mm9_v1_chr4_-_128798939_128798983	5.46817	NHLH1,2.p2	NM_001130419|Hpca|15444|hippocalcin
mm9_v1_chr13_+_97841524_97841597	5.46398	NHLH1,2.p2	AK173051|Fam169a|320557|family with sequence similarity 169, member A	NM_001100458|Fam169a|320557|family with sequence similarity 169, member A
mm9_v1_chr5_+_130924661_130924722	5.45285	NHLH1,2.p2	NM_021371|Caln1|140904|calneuron 1	AB041539|Caln1|140904|calneuron 1	BC057129|Caln1|140904|calneuron 1	BC058963|Caln1|140904|calneuron 1	AK158892|Caln1|140904|calneuron 1
mm9_v1_chr15_+_38908403_38908501	5.44514	NHLH1,2.p2	AK090258|Cthrc1|68588|collagen triple helix repeat containing 1	AK076498|Cthrc1|68588|collagen triple helix repeat containing 1	AK151282|Cthrc1|68588|collagen triple helix repeat containing 1	NM_026778|Cthrc1|68588|collagen triple helix repeat containing 1	AK003674|Cthrc1|68588|collagen triple helix repeat containing 1	BC131907|Cthrc1|68588|collagen triple helix repeat containing 1	BC144745|Cthrc1|68588|collagen triple helix repeat containing 1
mm9_v1_chr17_-_36045556_36045571	5.44396	NHLH1,2.p2	AK042804|Atat1|73242|alpha tubulin acetyltransferase 1
mm9_v1_chrX_-_70905062_70905211	5.4431	NHLH1,2.p2	AK134665|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	AF181984|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	NM_012040|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase
mm9_v1_chr4_-_151235861_151235879	5.43202	NHLH1,2.p2	AK158710|Camta1|100072|calmodulin binding transcription activator 1	NM_001081557|Camta1|100072|calmodulin binding transcription activator 1	NM_001195565|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr14_+_77556622_77556644	5.42762	NHLH1,2.p2	AK051821|Enox1|239188|ecto-NOX disulfide-thiol exchanger 1	NM_172813|Enox1|239188|ecto-NOX disulfide-thiol exchanger 1	AK045500|Enox1|239188|ecto-NOX disulfide-thiol exchanger 1
mm9_v1_chr8_-_85966340_85966438	5.42755	NHLH1,2.p2	AK076085|Scoc|56367|short coiled-coil protein	BC092071|Scoc|56367|short coiled-coil protein	BC085265|Scoc|56367|short coiled-coil protein	BC108407|Scoc|56367|short coiled-coil protein	AF115778|Scoc|56367|short coiled-coil protein	BC017629|Scoc|56367|short coiled-coil protein	AK088272|Scoc|56367|short coiled-coil protein	AK003095|Scoc|56367|short coiled-coil protein	AK167488|Scoc|56367|short coiled-coil protein
mm9_v1_chr11_-_110198978_110199029	5.42479	NHLH1,2.p2	AK047188|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5	AF491842|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5	BC064823|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5	AK035955|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5	NM_147219|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5
mm9_v1_chr11_+_42233258_42233286	5.4156	NHLH1,2.p2	AK090279|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	NM_008070|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	BC145973|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	BC145975|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2
mm9_v1_chr4_-_134828699_134828733	5.41466	NHLH1,2.p2	AK170942|Clic4|29876|chloride intracellular channel 4 (mitochondrial)
mm9_v1_chr13_-_96020120_96020284	5.40961	NHLH1,2.p2	EF644173|Pde8b|218461|phosphodiesterase 8B	NM_172263|Pde8b|218461|phosphodiesterase 8B	BC032286|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr6_-_125115316_125115426	5.40473	NHLH1,2.p2	BC096042|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase
mm9_v1_chr3_-_88576415_88576522	5.38281	NHLH1,2.p2	AK158745|Syt11|229521|synaptotagmin XI	AK144169|Syt11|229521|synaptotagmin XI	AK164082|Syt11|229521|synaptotagmin XI	BC054526|Syt11|229521|synaptotagmin XI	AK164368|Syt11|229521|synaptotagmin XI	NM_018804|Syt11|229521|synaptotagmin XI
mm9_v1_chr11_-_105805442_105805573	5.36856	NHLH1,2.p2	AK169711|Cyb561|13056|cytochrome b-561	AK014395|Cyb561|13056|cytochrome b-561	NM_007805|Cyb561|13056|cytochrome b-561	U16297|Cyb561|13056|cytochrome b-561	BC006732|Cyb561|13056|cytochrome b-561	AK158978|Cyb561|13056|cytochrome b-561
mm9_v1_chr8_-_85966482_85966569	5.36202	NHLH1,2.p2	NM_019708|Scoc|56367|short coiled-coil protein
mm9_v1_chr12_+_79327673_79327723	5.35134	NHLH1,2.p2	AK082353|Gphn|268566|gephyrin	BC127058|Gphn|268566|gephyrin
mm9_v1_chr4_-_128798481_128798555	5.32857	NHLH1,2.p2	BC049607|Hpca|15444|hippocalcin	NM_010471|Hpca|15444|hippocalcin	AK002992|Hpca|15444|hippocalcin
mm9_v1_chr11_-_65601657_65601750	5.32508	NHLH1,2.p2	AK187893|Map2k4|26398|mitogen-activated protein kinase kinase 4	U18310|Map2k4|26398|mitogen-activated protein kinase kinase 4
mm9_v1_chr15_-_83936183_83936238	5.31754	NHLH1,2.p2	BC054757|Sult4a1|29859|sulfotransferase family 4A, member 1	NM_013873|Sult4a1|29859|sulfotransferase family 4A, member 1
mm9_v1_chr1_+_34068669_34068669	5.31105	NHLH1,2.p2	AF396878|Dst|13518|dystonin	AF396879|Dst|13518|dystonin	NM_133833|Dst|13518|dystonin	NM_134448|Dst|13518|dystonin	U22452|Dst|13518|dystonin
mm9_v1_chr5_-_136410393_136410481	5.30323	NHLH1,2.p2	BC008129|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK088847|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AF058799|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AB073970|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK164356|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK076615|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK148618|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK153307|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr8_+_35217674_35217675	5.30072	NHLH1,2.p2	BC013497|Tmem66|67887|transmembrane protein 66
mm9_v1_chr11_+_31770920_31770944	5.28867	NHLH1,2.p2	AK173229|Cpeb4|67579|cytoplasmic polyadenylation element binding protein 4
mm9_v1_chr19_+_44368588_44368593	5.28593	NHLH1,2.p2	BC040384|Scd2|20250|stearoyl-Coenzyme A desaturase 2
mm9_v1_chr7_+_129432585_129432762	5.27324	NHLH1,2.p2	NM_008855|Prkcb|18751|protein kinase C, beta	AK051862|Prkcb|18751|protein kinase C, beta
mm9_v1_chr1_+_174242443_174242549	5.27112	NHLH1,2.p2	AK158522|Igsf8|140559|immunoglobulin superfamily, member 8	AK146221|Igsf8|140559|immunoglobulin superfamily, member 8	AK150239|Igsf8|140559|immunoglobulin superfamily, member 8	AK168363|Igsf8|140559|immunoglobulin superfamily, member 8	AK140254|Igsf8|140559|immunoglobulin superfamily, member 8	AK146104|Igsf8|140559|immunoglobulin superfamily, member 8	BC048387|Igsf8|140559|immunoglobulin superfamily, member 8	NM_080419|Igsf8|140559|immunoglobulin superfamily, member 8
mm9_v1_chr18_+_35000283_35000409	5.26458	NHLH1,2.p2	BC020184|Reep2|225362|receptor accessory protein 2	NM_144865|Reep2|225362|receptor accessory protein 2	AK147333|Reep2|225362|receptor accessory protein 2	AY562230|Reep2|225362|receptor accessory protein 2	EU555417|Reep2|225362|receptor accessory protein 2
mm9_v1_chr2_+_55289530_55289587	5.24779	NHLH1,2.p2	AK046778|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3	D45022|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3	NM_008426|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3	BC103671|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3	BC103673|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3	BC103674|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3	BC103672|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3
mm9_v1_chr6_+_71657791_71657963	5.23934	NHLH1,2.p2	AK035238|Reep1|52250|receptor accessory protein 1	AK045056|Reep1|52250|receptor accessory protein 1	NM_178608|Reep1|52250|receptor accessory protein 1	AK053158|Reep1|52250|receptor accessory protein 1	AK136916|Reep1|52250|receptor accessory protein 1	BC046826|Reep1|52250|receptor accessory protein 1	AY562229|Reep1|52250|receptor accessory protein 1
mm9_v1_chr6_-_8728094_8728149	5.23396	NHLH1,2.p2	BC002030|Ica1|15893|islet cell autoantigen 1	AK192988|Ica1|15893|islet cell autoantigen 1	U26459|Ica1|15893|islet cell autoantigen 1
mm9_v1_chr2_+_49474775_49474833	5.21052	NHLH1,2.p2	BC067051|Kif5c|16574|kinesin family member 5C	NM_008449|Kif5c|16574|kinesin family member 5C
mm9_v1_chr3_+_14886681_14886724	5.21044	NHLH1,2.p2	AK146015|Car2|12349|carbonic anhydrase 2	AK002333|Car2|12349|carbonic anhydrase 2	BC044806|Car2|12349|carbonic anhydrase 2	BC055291|Car2|12349|carbonic anhydrase 2	K00811|Car2|12349|carbonic anhydrase 2
mm9_v1_chr2_+_49474840_49474940	5.189	NHLH1,2.p2	AK158884|Kif5c|16574|kinesin family member 5C	AB093244|Kif5c|16574|kinesin family member 5C
mm9_v1_chr4_-_109149038_109149266	5.18157	NHLH1,2.p2	BC010299|Rnf11|29864|ring finger protein 11	NM_013876|Rnf11|29864|ring finger protein 11	AK014254|Rnf11|29864|ring finger protein 11
mm9_v1_chr14_+_55555300_55555355	5.15446	NHLH1,2.p2	AK005168|Cmtm5|67272|CKLF-like MARVEL transmembrane domain containing 5	AK013666|Cmtm5|67272|CKLF-like MARVEL transmembrane domain containing 5	NM_026066|Cmtm5|67272|CKLF-like MARVEL transmembrane domain containing 5	AY241867|Cmtm5|67272|CKLF-like MARVEL transmembrane domain containing 5	BC049665|Cmtm5|67272|CKLF-like MARVEL transmembrane domain containing 5	DQ115983|Cmtm5|67272|CKLF-like MARVEL transmembrane domain containing 5	AK005375|Cmtm5|67272|CKLF-like MARVEL transmembrane domain containing 5
mm9_v1_chr8_+_35217633_35217673	5.14016	NHLH1,2.p2	BC022616|Tmem66|67887|transmembrane protein 66	AK093942|Tmem66|67887|transmembrane protein 66
mm9_v1_chr19_+_44368576_44368577	5.13692	NHLH1,2.p2	M26270|Scd2|20250|stearoyl-Coenzyme A desaturase 2
mm9_v1_chrX_-_56387239_56387321	5.13086	NHLH1,2.p2	U66202|Fgf13|14168|fibroblast growth factor 13	AF020737|Fgf13|14168|fibroblast growth factor 13
mm9_v1_chr2_+_70400179_70400352	5.12882	NHLH1,2.p2	AK054554|Gad1|14415|glutamic acid decarboxylase 1	NM_008077|Gad1|14415|glutamic acid decarboxylase 1	AK148497|Gad1|14415|glutamic acid decarboxylase 1	AK160868|Gad1|14415|glutamic acid decarboxylase 1	AK136801|Gad1|14415|glutamic acid decarboxylase 1	BC027059|Gad1|14415|glutamic acid decarboxylase 1	AF326547|Gad1|14415|glutamic acid decarboxylase 1	AF326548|Gad1|14415|glutamic acid decarboxylase 1	Z49976|Gad1|14415|glutamic acid decarboxylase 1
mm9_v1_chr3_+_136333083_136333098	5.11544	NHLH1,2.p2	AK146387|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr6_+_118016385_118016436	5.11072	NHLH1,2.p2	NM_027526|Rasgef1a|70727|RasGEF domain family, member 1A	BC138284|Rasgef1a|70727|RasGEF domain family, member 1A	BC145232|Rasgef1a|70727|RasGEF domain family, member 1A	BC145752|Rasgef1a|70727|RasGEF domain family, member 1A
mm9_v1_chr11_-_119908236_119908480	5.10217	NHLH1,2.p2	AY236858|Aatk|11302|apoptosis-associated tyrosine kinase	AY236859|Aatk|11302|apoptosis-associated tyrosine kinase	AB288871|Aatk|11302|apoptosis-associated tyrosine kinase	AB093253|Aatk|11302|apoptosis-associated tyrosine kinase	NM_001198785|Aatk|11302|apoptosis-associated tyrosine kinase	NM_007377|Aatk|11302|apoptosis-associated tyrosine kinase	BC042837|Aatk|11302|apoptosis-associated tyrosine kinase	BC052323|Aatk|11302|apoptosis-associated tyrosine kinase
mm9_v1_chr13_-_69878721_69878801	5.09466	NHLH1,2.p2	NM_001145162|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1
mm9_v1_chr14_+_64225366_64225366	5.08171	NHLH1,2.p2	NM_173393|Xkr6|219149|X Kell blood group precursor related family member 6 homolog
mm9_v1_chrX_+_7215705_7215836	5.04999	NHLH1,2.p2	NM_009305|Syp|20977|synaptophysin	AK034291|Syp|20977|synaptophysin	AK043756|Syp|20977|synaptophysin	AK090259|Syp|20977|synaptophysin	BC052354|Syp|20977|synaptophysin	BC014823|Syp|20977|synaptophysin	X95818|Syp|20977|synaptophysin
mm9_v1_chr7_+_71646515_71646591	5.04456	NHLH1,2.p2	BC057620|Apba2|11784|amyloid beta (A4) precursor protein-binding, family A, member 2	NM_007461|Apba2|11784|amyloid beta (A4) precursor protein-binding, family A, member 2
mm9_v1_chr19_+_46836085_46836138	5.04303	NHLH1,2.p2	AK053711|Cnnm2|94219|cyclin M2	AK159616|Cnnm2|94219|cyclin M2	AK044400|Cnnm2|94219|cyclin M2	NM_001102471|Cnnm2|94219|cyclin M2	NM_033569|Cnnm2|94219|cyclin M2	BC012956|Cnnm2|94219|cyclin M2	AK032006|Cnnm2|94219|cyclin M2
mm9_v1_chr6_-_115201846_115201865	5.03474	NHLH1,2.p2	BC064046|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK038820|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK040814|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr2_-_180689380_180689413	5.01475	NHLH1,2.p2	BC061107|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	AK021096|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	NM_001141933|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	NM_021426|Nkain4|58237|Na+/K+ transporting ATPase interacting 4
mm9_v1_chr4_+_138011061_138011100	5.00811	NHLH1,2.p2	NM_025451|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1	AY523601|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm9_v1_chr4_+_122860705_122860828	5.00681	NHLH1,2.p2	AK032591|Hpcal4|170638|hippocalcin-like 4	NM_174998|Hpcal4|170638|hippocalcin-like 4
mm9_v1_chr7_+_30074296_30074361	5.0036	NHLH1,2.p2	AF352573|Ppp1r14a|68458|protein phosphatase 1, regulatory (inhibitor) subunit 14A	BC010832|Ppp1r14a|68458|protein phosphatase 1, regulatory (inhibitor) subunit 14A	NM_026731|Ppp1r14a|68458|protein phosphatase 1, regulatory (inhibitor) subunit 14A	AY050672|Ppp1r14a|68458|protein phosphatase 1, regulatory (inhibitor) subunit 14A	AK003249|Ppp1r14a|68458|protein phosphatase 1, regulatory (inhibitor) subunit 14A
mm9_v1_chr7_-_148513391_148513554	4.99338	NHLH1,2.p2	AK144333|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)	AK158586|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)	FJ377319|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)	AF102818|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)	AK082115|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)	FJ377318|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)	AK146546|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)
mm9_v1_chr10_-_6980199_6980474	4.99057	NHLH1,2.p2	AK042973|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	NM_133485|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AK047607|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AK085997|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AF407167|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c
mm9_v1_chr7_+_128535786_128535809	4.98032	NHLH1,2.p2	NM_001081327|Hs3st2|195646|heparan sulfate (glucosamine) 3-O-sulfotransferase 2
mm9_v1_chr15_-_74502981_74503002	4.97758	NHLH1,2.p2	AF162777|Arc|11838|activity regulated cytoskeletal-associated protein	BC023127|Arc|11838|activity regulated cytoskeletal-associated protein	AK170446|Arc|11838|activity regulated cytoskeletal-associated protein	AK157822|Arc|11838|activity regulated cytoskeletal-associated protein	NM_018790|Arc|11838|activity regulated cytoskeletal-associated protein
mm9_v1_chr2_-_25174662_25174740	4.97631	NHLH1,2.p2	AK090286|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_001177656|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_001177657|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_008169|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)
mm9_v1_chr15_+_83610434_83610456	4.9496	NHLH1,2.p2	AK048421|Mpped1|223726|metallophosphoesterase domain containing 1	NM_172610|Mpped1|223726|metallophosphoesterase domain containing 1
mm9_v1_chr12_-_11443284_11443537	4.93524	NHLH1,2.p2	BC046226|Vsnl1|26950|visinin-like 1	AK144454|Vsnl1|26950|visinin-like 1	AK160224|Vsnl1|26950|visinin-like 1	AJ489331|Vsnl1|26950|visinin-like 1	NM_012038|Vsnl1|26950|visinin-like 1
mm9_v1_chr2_-_30214724_30214844	4.93008	NHLH1,2.p2	AF426314|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	BC024477|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	NM_139302|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	AK155248|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	AK152409|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	AK152502|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	EF676083|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	AK167762|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	BC028859|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2
mm9_v1_chr15_-_75397030_75397077	4.92705	NHLH1,2.p2	AK034884|Ly6h|23934|lymphocyte antigen 6 complex, locus H	NM_001135689|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr9_-_44607274_44607334	4.92475	NHLH1,2.p2	AK090375|Tmem25|71687|transmembrane protein 25	AK165827|Tmem25|71687|transmembrane protein 25	AK002841|Tmem25|71687|transmembrane protein 25	NM_027865|Tmem25|71687|transmembrane protein 25	BC060057|Tmem25|71687|transmembrane protein 25	BC060243|Tmem25|71687|transmembrane protein 25	AK154206|Tmem25|71687|transmembrane protein 25	AK165199|Tmem25|71687|transmembrane protein 25
mm9_v1_chr19_+_45635070_45635130	4.91526	NHLH1,2.p2	BC027559|Dpcd|226162|deleted in primary ciliary dyskinesia	AK077347|Dpcd|226162|deleted in primary ciliary dyskinesia	NM_172639|Dpcd|226162|deleted in primary ciliary dyskinesia
mm9_v1_chr12_-_73509668_73509745	4.91426	NHLH1,2.p2	BC053926|Rtn1|104001|reticulon 1	BC058579|Rtn1|104001|reticulon 1
mm9_v1_chr14_-_122196929_122196955	4.90868	NHLH1,2.p2	NM_134074|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr12_+_79327630_79327650	4.90362	NHLH1,2.p2	AK144569|Gphn|268566|gephyrin	NM_145965|Gphn|268566|gephyrin	NM_172952|Gphn|268566|gephyrin
mm9_v1_chr11_+_72832523_72832554	4.89429	NHLH1,2.p2	BC017529|Camkk1|55984|calcium/calmodulin-dependent protein kinase kinase 1, alpha	AF117384|Camkk1|55984|calcium/calmodulin-dependent protein kinase kinase 1, alpha
mm9_v1_chr4_-_91042997_91043190	4.89093	NHLH1,2.p2	AK149201|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	AK141919|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_001177883|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr10_-_75022948_75023074	4.88237	NHLH1,2.p2	BC055322|AI646023|192734|expressed sequence AI646023	BC056492|AI646023|192734|expressed sequence AI646023	NM_198860|AI646023|192734|expressed sequence AI646023
mm9_v1_chr16_-_17576750_17576790	4.8802	NHLH1,2.p2	AK030586|Slc7a4|224022|solute carrier family 7 (cationic amino acid transporter, y+ system), member 4	AK043772|Slc7a4|224022|solute carrier family 7 (cationic amino acid transporter, y+ system), member 4	NM_144852|Slc7a4|224022|solute carrier family 7 (cationic amino acid transporter, y+ system), member 4
mm9_v1_chr19_+_23833310_23833547	4.87299	NHLH1,2.p2	NM_177034|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147583|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147623|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	BC141181|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1
mm9_v1_chr10_+_126921038_126921212	4.85554	NHLH1,2.p2	BC023826|R3hdm2|71750|R3H domain containing 2
mm9_v1_chr16_-_85173764_85173823	4.85103	NHLH1,2.p2	AK218334|App|11820|amyloid beta (A4) precursor protein	AY267348|App|11820|amyloid beta (A4) precursor protein	AK148439|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr1_-_84281164_84281254	4.85048	NHLH1,2.p2	BC080290|Pid1|98496|phosphotyrosine interaction domain containing 1	AK164328|Pid1|98496|phosphotyrosine interaction domain containing 1	AK151267|Pid1|98496|phosphotyrosine interaction domain containing 1	AK163691|Pid1|98496|phosphotyrosine interaction domain containing 1	NM_001003948|Pid1|98496|phosphotyrosine interaction domain containing 1
mm9_v1_chr7_-_36340213_36340340	4.84894	NHLH1,2.p2	AK179860|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19	AK183336|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19
mm9_v1_chr11_+_87394609_87394632	4.82867	NHLH1,2.p2	NM_011129|Sept4|18952|septin 4	X61452|Sept4|18952|septin 4
mm9_v1_chr12_-_112910475_112910550	4.82207	NHLH1,2.p2	BC106109|Ckb|12709|creatine kinase, brain	BC015271|Ckb|12709|creatine kinase, brain	AK014299|Ckb|12709|creatine kinase, brain	BC058257|Ckb|12709|creatine kinase, brain	AK148885|Ckb|12709|creatine kinase, brain	AK152388|Ckb|12709|creatine kinase, brain	AK153484|Ckb|12709|creatine kinase, brain	AK161990|Ckb|12709|creatine kinase, brain	AK002467|Ckb|12709|creatine kinase, brain	AK165779|Ckb|12709|creatine kinase, brain	AK166980|Ckb|12709|creatine kinase, brain	AK167034|Ckb|12709|creatine kinase, brain	NM_021273|Ckb|12709|creatine kinase, brain
mm9_v1_chr8_-_126039251_126039279	4.80897	NHLH1,2.p2	AK013173|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1
mm9_v1_chr8_+_10153910_10154187	4.80366	NHLH1,2.p2	BC072580|Myo16|244281|myosin XVI	NM_001081397|Myo16|244281|myosin XVI	BC151049|Myo16|244281|myosin XVI	BC151051|Myo16|244281|myosin XVI	BC157966|Myo16|244281|myosin XVI	BC172122|Myo16|244281|myosin XVI	BC082311|Myo16|244281|myosin XVI	AK082350|Myo16|244281|myosin XVI
mm9_v1_chr10_-_70807521_70807640	4.79537	NHLH1,2.p2	AK131605|Cisd1|52637|CDGSH iron sulfur domain 1	AK167898|Cisd1|52637|CDGSH iron sulfur domain 1	BC013522|Cisd1|52637|CDGSH iron sulfur domain 1	AK131595|Cisd1|52637|CDGSH iron sulfur domain 1	AK075907|Cisd1|52637|CDGSH iron sulfur domain 1	NM_134007|Cisd1|52637|CDGSH iron sulfur domain 1	AK131812|Cisd1|52637|CDGSH iron sulfur domain 1	AK131995|Cisd1|52637|CDGSH iron sulfur domain 1	BC019860|Cisd1|52637|CDGSH iron sulfur domain 1	BC021952|Cisd1|52637|CDGSH iron sulfur domain 1
mm9_v1_chr2_-_115890247_115890356	4.78473	NHLH1,2.p2	AK158513|Meis2|17536|Meis homeobox 2	AK158839|Meis2|17536|Meis homeobox 2	NM_001159569|Meis2|17536|Meis homeobox 2	NM_001159570|Meis2|17536|Meis homeobox 2
mm9_v1_chr9_-_56483379_56483515	4.77997	NHLH1,2.p2	AK034084|Lingo1|235402|leucine rich repeat and Ig domain containing 1
mm9_v1_chr7_-_125849230_125849252	4.77964	NHLH1,2.p2	AF212860|Gde1|56209|glycerophosphodiester phosphodiesterase 1	AK005361|Gde1|56209|glycerophosphodiester phosphodiesterase 1	NM_019580|Gde1|56209|glycerophosphodiester phosphodiesterase 1
mm9_v1_chr3_-_69402739_69402860	4.76983	NHLH1,2.p2	AK088407|B3galnt1|26879|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	NM_020026|B3galnt1|26879|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1
mm9_v1_chr7_-_125849167_125849210	4.75052	NHLH1,2.p2	AK186739|Gde1|56209|glycerophosphodiester phosphodiesterase 1	BC003902|Gde1|56209|glycerophosphodiester phosphodiesterase 1
mm9_v1_chr16_-_35769389_35769480	4.74461	NHLH1,2.p2	BC037460|Dirc2|224132|disrupted in renal carcinoma 2 (human)	AK034214|Dirc2|224132|disrupted in renal carcinoma 2 (human)	NM_153550|Dirc2|224132|disrupted in renal carcinoma 2 (human)	AK172331|Dirc2|224132|disrupted in renal carcinoma 2 (human)
mm9_v1_chr5_+_34339351_34339354	4.72681	NHLH1,2.p2	AK147594|Nat8l|269642|N-acetyltransferase 8-like
mm9_v1_chr8_+_126329865_126330035	4.71539	NHLH1,2.p2	NM_009003|Rab4a|19341|RAB4A, member RAS oncogene family	AK136566|Rab4a|19341|RAB4A, member RAS oncogene family	AK145452|Rab4a|19341|RAB4A, member RAS oncogene family	D86563|Rab4a|19341|RAB4A, member RAS oncogene family	AK161877|Rab4a|19341|RAB4A, member RAS oncogene family	BC138508|Rab4a|19341|RAB4A, member RAS oncogene family	AB232591|Rab4a|19341|RAB4A, member RAS oncogene family
mm9_v1_chr11_+_83223154_83223242	4.70589	NHLH1,2.p2	AK045997|Rasl10b|276952|RAS-like, family 10, member B
mm9_v1_chr11_-_74403603_74403659	4.66788	NHLH1,2.p2	NM_001015046|Rap1gap2|380711|RAP1 GTPase activating protein 2
mm9_v1_chr11_+_72832489_72832515	4.66783	NHLH1,2.p2	AK144483|Camkk1|55984|calcium/calmodulin-dependent protein kinase kinase 1, alpha	NM_018883|Camkk1|55984|calcium/calmodulin-dependent protein kinase kinase 1, alpha
mm9_v1_chr11_-_79317471_79317554	4.64836	NHLH1,2.p2	BC024757|Omg|18377|oligodendrocyte myelin glycoprotein
mm9_v1_chrX_+_133200982_133201022	4.63832	NHLH1,2.p2	AK003156|Tceal3|594844|transcription elongation factor A (SII)-like 3	AK017585|Tceal3|594844|transcription elongation factor A (SII)-like 3	BC027131|Tceal3|594844|transcription elongation factor A (SII)-like 3
mm9_v1_chr11_-_59263508_59263510	4.63389	NHLH1,2.p2	AK144165|Snap47|67826|synaptosomal-associated protein, 47
mm9_v1_chr15_-_36426471_36426537	4.62746	NHLH1,2.p2	AK088304|Ankrd46|68839|ankyrin repeat domain 46	AK148049|Ankrd46|68839|ankyrin repeat domain 46	BC094595|Ankrd46|68839|ankyrin repeat domain 46	BC086659|Ankrd46|68839|ankyrin repeat domain 46
mm9_v1_chr13_+_104899814_104899860	4.61838	NHLH1,2.p2	AK049820|Sgtb|218544|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
mm9_v1_chr5_+_34339551_34339692	4.61764	NHLH1,2.p2	BC075616|Nat8l|269642|N-acetyltransferase 8-like	DQ174094|Nat8l|269642|N-acetyltransferase 8-like
mm9_v1_chr12_-_73171976_73172111	4.61066	NHLH1,2.p2	BC114990|Gpr135|238252|G protein-coupled receptor 135	BC115824|Gpr135|238252|G protein-coupled receptor 135	AY288425|Gpr135|238252|G protein-coupled receptor 135	BC148305|Gpr135|238252|G protein-coupled receptor 135	NM_181752|Gpr135|238252|G protein-coupled receptor 135	BC062104|Gpr135|238252|G protein-coupled receptor 135	BC139332|Gpr135|238252|G protein-coupled receptor 135	BC139335|Gpr135|238252|G protein-coupled receptor 135	AK141053|Gpr135|238252|G protein-coupled receptor 135	AK132237|Gpr135|238252|G protein-coupled receptor 135
mm9_v1_chr13_-_100286521_100286556	4.60125	NHLH1,2.p2	NM_008634|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr2_-_122436933_122437055	4.59726	NHLH1,2.p2	BC003879|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK153450|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK145862|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK146052|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK151313|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK007325|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK145914|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK146111|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK152069|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	NM_025961|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)
mm9_v1_chr11_-_79317583_79317590	4.58488	NHLH1,2.p2	NM_019409|Omg|18377|oligodendrocyte myelin glycoprotein	AK136910|Omg|18377|oligodendrocyte myelin glycoprotein
mm9_v1_chr3_+_64913289_64913311	4.58311	NHLH1,2.p2	AK031362|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	AK138467|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	X97281|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm9_v1_chr7_-_36340918_36340946	4.58246	NHLH1,2.p2	BC051553|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19	NM_033080|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19
mm9_v1_chr8_-_4259126_4259300	4.58091	NHLH1,2.p2	AK158759|Ctxn1|330695|cortexin 1	BC028881|Ctxn1|330695|cortexin 1	AK154120|Ctxn1|330695|cortexin 1	NM_183315|Ctxn1|330695|cortexin 1
mm9_v1_chr8_+_122638031_122638087	4.57409	NHLH1,2.p2	AK032447|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	AK046401|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	AK051096|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	NM_001163761|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	NM_001163762|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	NM_172286|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	AK133157|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	AK172108|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	AK122299|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene
mm9_v1_chr9_+_15043488_15043639	4.57286	NHLH1,2.p2	AK008621|2200002K05Rik|69137|RIKEN cDNA 2200002K05 gene	AK034938|2200002K05Rik|69137|RIKEN cDNA 2200002K05 gene	NM_026955|2200002K05Rik|69137|RIKEN cDNA 2200002K05 gene	BC055786|2200002K05Rik|69137|RIKEN cDNA 2200002K05 gene
mm9_v1_chr16_-_10542689_10542847	4.55744	NHLH1,2.p2	AK183993|Dexi|58239|dexamethasone-induced transcript	AF152470|Dexi|58239|dexamethasone-induced transcript
mm9_v1_chr7_+_52962402_52962473	4.55479	NHLH1,2.p2	BC064094|Dbp|13170|D site albumin promoter binding protein
mm9_v1_chr19_-_5457470_5457607	4.53845	NHLH1,2.p2	BC016659|Ccdc85b|240514|coiled-coil domain containing 85B	BC094592|Ccdc85b|240514|coiled-coil domain containing 85B	BC058411|Ccdc85b|240514|coiled-coil domain containing 85B	NM_198616|Ccdc85b|240514|coiled-coil domain containing 85B
mm9_v1_chr15_-_75397601_75397641	4.52588	NHLH1,2.p2	NM_011837|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr2_+_124962427_124962427	4.52527	NHLH1,2.p2	AK141570|Ctxn2|381418|cortexin 2	NM_001162934|Ctxn2|381418|cortexin 2
mm9_v1_chr1_+_196446006_196446022	4.51909	NHLH1,2.p2	NM_008882|Plxna2|18845|plexin A2
mm9_v1_chr7_-_125849255_125849313	4.51838	NHLH1,2.p2	AK004583|Gde1|56209|glycerophosphodiester phosphodiesterase 1	AK150807|Gde1|56209|glycerophosphodiester phosphodiesterase 1
mm9_v1_chr13_-_100286446_100286519	4.48009	NHLH1,2.p2	BC019183|Mtap1b|17755|microtubule-associated protein 1B	BC046287|Mtap1b|17755|microtubule-associated protein 1B	BC052016|Mtap1b|17755|microtubule-associated protein 1B	BC078457|Mtap1b|17755|microtubule-associated protein 1B	BC138033|Mtap1b|17755|microtubule-associated protein 1B	BC138034|Mtap1b|17755|microtubule-associated protein 1B	BC037105|Mtap1b|17755|microtubule-associated protein 1B	X51396|Mtap1b|17755|microtubule-associated protein 1B	AK158307|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr7_+_69493148_69493265	4.46141	NHLH1,2.p2	NM_010882|Ndn|17984|necdin	BC147249|Ndn|17984|necdin	BC147250|Ndn|17984|necdin	AK005078|Ndn|17984|necdin	AK075729|Ndn|17984|necdin	AK076025|Ndn|17984|necdin	AK078129|Ndn|17984|necdin	AK135444|Ndn|17984|necdin	AK149086|Ndn|17984|necdin	AK075735|Ndn|17984|necdin	M80840|Ndn|17984|necdin
mm9_v1_chr17_-_25570566_25570712	4.45871	NHLH1,2.p2	BC138026|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit	BC058206|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit
mm9_v1_chr2_+_25284190_25284289	4.44556	NHLH1,2.p2	AK169438|Abca2|11305|ATP-binding cassette, sub-family A (ABC1), member 2	NM_007379|Abca2|11305|ATP-binding cassette, sub-family A (ABC1), member 2	X75927|Abca2|11305|ATP-binding cassette, sub-family A (ABC1), member 2
mm9_v1_chr5_-_143084635_143084646	4.44093	NHLH1,2.p2	AY134664|Mmd2|75104|monocyte to macrophage differentiation-associated 2
mm9_v1_chr1_-_94998418_94998474	4.43602	NHLH1,2.p2	BC045161|Kif1a|16560|kinesin family member 1A	BC054538|Kif1a|16560|kinesin family member 1A	BC062891|Kif1a|16560|kinesin family member 1A	NM_001110315|Kif1a|16560|kinesin family member 1A	NM_008440|Kif1a|16560|kinesin family member 1A
mm9_v1_chr3_+_13471643_13471656	4.43131	NHLH1,2.p2	NM_001163328|Ralyl|76897|RALY RNA binding protein-like	NM_178631|Ralyl|76897|RALY RNA binding protein-like
mm9_v1_chr2_+_92439758_92439886	4.3993	NHLH1,2.p2	NM_023850|Chst1|76969|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
mm9_v1_chr18_-_43847367_43847426	4.39637	NHLH1,2.p2	AK133750|Jakmip2|76217|janus kinase and microtubule interacting protein 2	NM_001163637|Jakmip2|76217|janus kinase and microtubule interacting protein 2
mm9_v1_chr6_-_54516326_54516404	4.39245	NHLH1,2.p2	BC023889|Scrn1|69938|secernin 1	AK089968|Scrn1|69938|secernin 1	AK129084|Scrn1|69938|secernin 1	AK082953|Scrn1|69938|secernin 1	NM_027268|Scrn1|69938|secernin 1	AK145904|Scrn1|69938|secernin 1	AK050481|Scrn1|69938|secernin 1	AK012765|Scrn1|69938|secernin 1	AK032573|Scrn1|69938|secernin 1
mm9_v1_chr7_+_52955569_52955641	4.38966	NHLH1,2.p2	AB079601|Car11|12348|carbonic anhydrase 11
mm9_v1_chr8_+_125135519_125135565	4.38882	NHLH1,2.p2	NM_021502|Trappc2l|59005|trafficking protein particle complex 2-like	AB030200|Trappc2l|59005|trafficking protein particle complex 2-like	BC028502|Trappc2l|59005|trafficking protein particle complex 2-like	AK007526|Trappc2l|59005|trafficking protein particle complex 2-like	BC114968|Trappc2l|59005|trafficking protein particle complex 2-like
mm9_v1_chr2_-_180689328_180689372	4.37737	NHLH1,2.p2	EF058055|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	EF058056|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	EF058057|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	BC089330|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	AB030182|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	AK007632|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	AK005262|Nkain4|58237|Na+/K+ transporting ATPase interacting 4
mm9_v1_chr7_+_17460662_17460665	4.36978	NHLH1,2.p2	DQ832319|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)	NM_001081655|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm9_v1_chr3_-_152003317_152003373	4.36803	NHLH1,2.p2	BC138328|Fam73a|215708|family with sequence similarity 73, member A	BC138329|Fam73a|215708|family with sequence similarity 73, member A	AK166051|Fam73a|215708|family with sequence similarity 73, member A	BC059928|Fam73a|215708|family with sequence similarity 73, member A	AK044739|Fam73a|215708|family with sequence similarity 73, member A	BC098205|Fam73a|215708|family with sequence similarity 73, member A	AK045347|Fam73a|215708|family with sequence similarity 73, member A	AK143366|Fam73a|215708|family with sequence similarity 73, member A	AK085017|Fam73a|215708|family with sequence similarity 73, member A	NM_001162375|Fam73a|215708|family with sequence similarity 73, member A	NM_174868|Fam73a|215708|family with sequence similarity 73, member A
mm9_v1_chr5_-_125342474_125342590	4.35905	NHLH1,2.p2	BC021492|Ccdc92|215707|coiled-coil domain containing 92	AK028192|Ccdc92|215707|coiled-coil domain containing 92	AK165371|Ccdc92|215707|coiled-coil domain containing 92	NM_144819|Ccdc92|215707|coiled-coil domain containing 92
mm9_v1_chr13_-_69877709_69877899	4.35447	NHLH1,2.p2	BC058543|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1	BC116979|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1	BC116981|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1
mm9_v1_chr13_-_92901406_92901450	4.34448	NHLH1,2.p2	NM_009027|Rasgrf2|19418|RAS protein-specific guanine nucleotide-releasing factor 2	U67326|Rasgrf2|19418|RAS protein-specific guanine nucleotide-releasing factor 2
mm9_v1_chr6_-_50211753_50211973	4.32888	NHLH1,2.p2	AK089459|Dfna5|54722|deafness, autosomal dominant 5 (human)	AK171278|Dfna5|54722|deafness, autosomal dominant 5 (human)	AF073309|Dfna5|54722|deafness, autosomal dominant 5 (human)	NM_018769|Dfna5|54722|deafness, autosomal dominant 5 (human)	BC051962|Dfna5|54722|deafness, autosomal dominant 5 (human)	BC086618|Dfna5|54722|deafness, autosomal dominant 5 (human)	AK041358|Dfna5|54722|deafness, autosomal dominant 5 (human)
mm9_v1_chr7_-_28338185_28338214	4.32814	NHLH1,2.p2	BC076586|Pld3|18807|phospholipase D family, member 3
mm9_v1_chr8_-_126039287_126039398	4.30629	NHLH1,2.p2	BC046622|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	AK028187|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	AK163434|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	NM_001170975|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	NM_001170976|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	NM_028146|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1
mm9_v1_chr14_+_112074336_112074336	4.30378	NHLH1,2.p2	NM_198865|Slitrk5|75409|SLIT and NTRK-like family, member 5
mm9_v1_chrX_+_53862956_53863040	4.28679	NHLH1,2.p2	NM_172780|Slc9a6|236794|solute carrier family 9 (sodium/hydrogen exchanger), member 6	AK032326|Slc9a6|236794|solute carrier family 9 (sodium/hydrogen exchanger), member 6	BC130221|Slc9a6|236794|solute carrier family 9 (sodium/hydrogen exchanger), member 6	AK122232|Slc9a6|236794|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm9_v1_chr16_+_94592307_94592357	4.28001	NHLH1,2.p2	AK088273|Ttc3|22129|tetratricopeptide repeat domain 3	NM_009441|Ttc3|22129|tetratricopeptide repeat domain 3	AK053765|Ttc3|22129|tetratricopeptide repeat domain 3	AK170087|Ttc3|22129|tetratricopeptide repeat domain 3
mm9_v1_chr4_+_104829867_104829919	4.27538	NHLH1,2.p2	AK159136|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr14_-_76956445_76956583	4.26539	NHLH1,2.p2	AY425619|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	NM_001160326|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	AK012850|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2
mm9_v1_chr10_-_18463500_18463563	4.26049	NHLH1,2.p2	AK165602|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK148343|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK147963|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK147679|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	NM_001033258|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed
mm9_v1_chr7_-_20281956_20282388	4.25449	NHLH1,2.p2	
mm9_v1_chrX_+_162676910_162677002	4.25157	NHLH1,2.p2	BC025165|Gpm6b|14758|glycoprotein m6b	AK016567|Gpm6b|14758|glycoprotein m6b	AK020224|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr16_+_7069927_7069947	4.25054	NHLH1,2.p2	AF191501|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	NM_183188|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr1_+_196446049_196446240	4.24978	NHLH1,2.p2	D86949|Plxna2|18845|plexin A2	BC068155|Plxna2|18845|plexin A2
mm9_v1_chr10_+_78243239_78243246	4.24122	NHLH1,2.p2	AK159197|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6	NM_009200|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6	D83262|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
mm9_v1_chr12_-_93087514_93087619	4.23544	NHLH1,2.p2	AF063095|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK160936|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	BC026816|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK005023|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK146022|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK161546|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK160420|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK005544|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK220502|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	NM_001039089|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	NM_011344|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)
mm9_v1_chr7_+_137836279_137836292	4.23407	NHLH1,2.p2	AK165603|Tacc2|57752|transforming, acidic coiled-coil containing protein 2
mm9_v1_chr7_+_52955153_52955456	4.23034	NHLH1,2.p2	AK140073|Car11|12348|carbonic anhydrase 11	AK013465|Car11|12348|carbonic anhydrase 11	AY075026|Car11|12348|carbonic anhydrase 11	NM_009800|Car11|12348|carbonic anhydrase 11	BC019393|Car11|12348|carbonic anhydrase 11
mm9_v1_chr7_-_28338127_28338176	4.22462	NHLH1,2.p2	BC068170|Pld3|18807|phospholipase D family, member 3	AF026124|Pld3|18807|phospholipase D family, member 3	NM_011116|Pld3|18807|phospholipase D family, member 3
mm9_v1_chr18_-_74224541_74224647	4.21493	NHLH1,2.p2	AK157930|Mapk4|225724|mitogen-activated protein kinase 4	AK046051|Mapk4|225724|mitogen-activated protein kinase 4	AK079654|Mapk4|225724|mitogen-activated protein kinase 4	NM_172632|Mapk4|225724|mitogen-activated protein kinase 4
mm9_v1_chr14_-_124591742_124591767	4.2112	NHLH1,2.p2	U66204|Fgf14|14169|fibroblast growth factor 14	NM_010201|Fgf14|14169|fibroblast growth factor 14
mm9_v1_chr6_-_148392841_148392873	4.20815	NHLH1,2.p2	AK137545|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1	AK046396|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1	NM_198967|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1
mm9_v1_chr11_-_6375845_6375919	4.20286	NHLH1,2.p2	AF017630|Purb|19291|purine rich element binding protein B	NM_011221|Purb|19291|purine rich element binding protein B
mm9_v1_chr6_+_91106773_91106820	4.1997	NHLH1,2.p2	AK045994|Hdac11|232232|histone deacetylase 11	BC016208|Hdac11|232232|histone deacetylase 11	NM_144919|Hdac11|232232|histone deacetylase 11
mm9_v1_chr6_-_142456402_142456478	4.19315	NHLH1,2.p2	X51905|Ldhb|16832|lactate dehydrogenase B	AK002257|Ldhb|16832|lactate dehydrogenase B	BC087888|Ldhb|16832|lactate dehydrogenase B	BC046755|Ldhb|16832|lactate dehydrogenase B	NM_008492|Ldhb|16832|lactate dehydrogenase B	AK131637|Ldhb|16832|lactate dehydrogenase B	AK019391|Ldhb|16832|lactate dehydrogenase B
mm9_v1_chr17_+_8994520_8994643	4.19233	NHLH1,2.p2	AK014090|Pde10a|23984|phosphodiesterase 10A	AY360383|Pde10a|23984|phosphodiesterase 10A	NM_011866|Pde10a|23984|phosphodiesterase 10A	AK147690|Pde10a|23984|phosphodiesterase 10A
mm9_v1_chr8_-_124102548_124102765	4.19145	NHLH1,2.p2	AB041586|Fbxo31|76454|F-box protein 31	AK163641|Fbxo31|76454|F-box protein 31	BC026929|Fbxo31|76454|F-box protein 31	AK140412|Fbxo31|76454|F-box protein 31	NM_133765|Fbxo31|76454|F-box protein 31
mm9_v1_chr14_+_3049284_3049307	4.18698	NHLH1,2.p2	BC028273|Gm2897|100040671|predicted gene 2897	NM_001177715|Gm2897|100040671|predicted gene 2897	NM_001177714|Gm2897|100040671|predicted gene 2897	AK049619|Gm2897|100040671|predicted gene 2897
mm9_v1_chr4_-_137882005_137882036	4.16819	NHLH1,2.p2	BC018561|Pink1|68943|PTEN induced putative kinase 1
mm9_v1_chr14_+_58143613_58143864	4.16306	NHLH1,2.p2	AK131917|Il17d|239114|interleukin 17D	NM_145837|Il17d|239114|interleukin 17D	AF458063|Il17d|239114|interleukin 17D
mm9_v1_chr2_-_180869796_180869941	4.16227	NHLH1,2.p2	AF490773|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000494|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000495|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000496|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000497|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000498|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000499|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000500|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000501|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000502|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000503|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000504|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	BC145453|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001003824|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001003825|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006668|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006669|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006674|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006675|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006676|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006677|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006678|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006679|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006680|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_010611|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2
mm9_v1_chr9_+_86465577_86465659	4.16176	NHLH1,2.p2	NM_001145969|Rwdd2a|69519|RWD domain containing 2A	AK006533|Rwdd2a|69519|RWD domain containing 2A	BC115691|Rwdd2a|69519|RWD domain containing 2A	BC115692|Rwdd2a|69519|RWD domain containing 2A	NM_001145968|Rwdd2a|69519|RWD domain containing 2A	NM_027100|Rwdd2a|69519|RWD domain containing 2A
mm9_v1_chr5_-_143084677_143084746	4.15793	NHLH1,2.p2	AY424299|Mmd2|75104|monocyte to macrophage differentiation-associated 2	BC025064|Mmd2|75104|monocyte to macrophage differentiation-associated 2	NM_175217|Mmd2|75104|monocyte to macrophage differentiation-associated 2
mm9_v1_chr15_-_36426538_36426542	4.15475	NHLH1,2.p2	AB076382|Ankrd46|68839|ankyrin repeat domain 46
mm9_v1_chr9_-_21856445_21856470	4.15422	NHLH1,2.p2	U29148|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	BC052097|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	AK090281|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	NM_010487|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)
mm9_v1_chr3_-_143867852_143867939	4.14896	NHLH1,2.p2	AK080534|Lmo4|16911|LIM domain only 4	BC010278|Lmo4|16911|LIM domain only 4	AF096996|Lmo4|16911|LIM domain only 4
mm9_v1_chr5_+_89012596_89012599	4.14833	NHLH1,2.p2	BC049127|Rufy3|52822|RUN and FYVE domain containing 3	NM_027530|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr1_-_159342068_159342217	4.1462	NHLH1,2.p2	BC120902|Rasal2|226525|RAS protein activator like 2
mm9_v1_chr2_+_118605431_118605659	4.14204	NHLH1,2.p2	AK045560|Disp2|214240|dispatched homolog 2 (Drosophila)	NM_170593|Disp2|214240|dispatched homolog 2 (Drosophila)	AK036480|Disp2|214240|dispatched homolog 2 (Drosophila)	AK038938|Disp2|214240|dispatched homolog 2 (Drosophila)	AK035975|Disp2|214240|dispatched homolog 2 (Drosophila)	AY150699|Disp2|214240|dispatched homolog 2 (Drosophila)	BC118526|Disp2|214240|dispatched homolog 2 (Drosophila)
mm9_v1_chrX_+_53984926_53984997	4.12757	NHLH1,2.p2	AK128904|Fhl1|14199|four and a half LIM domains 1	NM_010211|Fhl1|14199|four and a half LIM domains 1	U77039|Fhl1|14199|four and a half LIM domains 1
mm9_v1_chr1_+_174242554_174242688	4.11453	NHLH1,2.p2	AF439263|Igsf8|140559|immunoglobulin superfamily, member 8	AF411055|Igsf8|140559|immunoglobulin superfamily, member 8	AK213338|Igsf8|140559|immunoglobulin superfamily, member 8
mm9_v1_chr18_+_32536898_32536994	4.10781	NHLH1,2.p2	BC065160|Bin1|30948|bridging integrator 1
mm9_v1_chr6_+_7505070_7505199	4.10674	NHLH1,2.p2	D17584|Tac1|21333|tachykinin 1	NM_009311|Tac1|21333|tachykinin 1	BC117081|Tac1|21333|tachykinin 1	BC119122|Tac1|21333|tachykinin 1	BC144737|Tac1|21333|tachykinin 1
mm9_v1_chr2_-_92232506_92232632	4.07981	NHLH1,2.p2	AF109769|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF109770|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF109771|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chr14_-_68743060_68743060	4.07614	NHLH1,2.p2	NM_008691|Nefm|18040|neurofilament, medium polypeptide
mm9_v1_chr10_-_61693963_61693977	4.0677	NHLH1,2.p2	AK012471|Tspan15|70423|tetraspanin 15	NM_197996|Tspan15|70423|tetraspanin 15	AK172169|Tspan15|70423|tetraspanin 15
mm9_v1_chr11_-_76384852_76384920	4.06543	NHLH1,2.p2	AK142364|Abr|109934|active BCR-related gene	NM_198895|Abr|109934|active BCR-related gene
mm9_v1_chr7_+_28043932_28043952	4.04368	NHLH1,2.p2	BC098097|Numbl|18223|numb-like	BC068116|Numbl|18223|numb-like
mm9_v1_chr1_-_134539434_134539434	4.03357	NHLH1,2.p2	NM_001160316|Nfasc|269116|neurofascin
mm9_v1_chr19_+_27291507_27291624	4.01929	NHLH1,2.p2	AK044683|Vldlr|22359|very low density lipoprotein receptor	AK076172|Vldlr|22359|very low density lipoprotein receptor	NM_001161420|Vldlr|22359|very low density lipoprotein receptor	NM_013703|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr8_-_88364846_88364855	4.01706	NHLH1,2.p2	NM_028007|Itfg1|71927|integrin alpha FG-GAP repeat containing 1
mm9_v1_chr5_-_36740713_36740796	4.00902	NHLH1,2.p2	BC138873|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	BC138875|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	AK053853|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	AY004316|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	AB093294|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	AK047881|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	NM_030889|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2
mm9_v1_chr4_+_148919218_148919225	3.99627	NHLH1,2.p2	AK003595|Ctnnbip1|67087|catenin beta interacting protein 1	NM_001141930|Ctnnbip1|67087|catenin beta interacting protein 1
mm9_v1_chr11_+_29592897_29592944	3.99436	NHLH1,2.p2	NM_194052|Rtn4|68585|reticulon 4	NM_194053|Rtn4|68585|reticulon 4	NM_194054|Rtn4|68585|reticulon 4
mm9_v1_chr13_+_46513668_46513668	3.98942	NHLH1,2.p2	NM_001081425|Rbm24|666794|RNA binding motif protein 24
mm9_v1_chr2_-_80287552_80287621	3.98468	NHLH1,2.p2	AK029941|Frzb|20378|frizzled-related protein	NM_011356|Frzb|20378|frizzled-related protein
mm9_v1_chr11_-_58752374_58752457	3.98376	NHLH1,2.p2	AK076158|Rnf187|108660|ring finger protein 187	AB030190|Rnf187|108660|ring finger protein 187	BC072613|Rnf187|108660|ring finger protein 187	AK088973|Rnf187|108660|ring finger protein 187	NM_022423|Rnf187|108660|ring finger protein 187	AK075944|Rnf187|108660|ring finger protein 187
mm9_v1_chr6_-_136824323_136824329	3.98017	NHLH1,2.p2	AK018719|Mgp|17313|matrix Gla protein	AK159591|Mgp|17313|matrix Gla protein	AK159931|Mgp|17313|matrix Gla protein	NM_008597|Mgp|17313|matrix Gla protein
mm9_v1_chr8_-_88364760_88364825	3.97952	NHLH1,2.p2	AK132242|Itfg1|71927|integrin alpha FG-GAP repeat containing 1	BC003977|Itfg1|71927|integrin alpha FG-GAP repeat containing 1	AK141948|Itfg1|71927|integrin alpha FG-GAP repeat containing 1
mm9_v1_chr1_-_79855177_79855208	3.97025	NHLH1,2.p2	BC010675|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2
mm9_v1_chr16_+_5885447_5885760	3.97002	NHLH1,2.p2	AB041596|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	AK158194|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr7_+_134072351_134072419	3.96422	NHLH1,2.p2	AK075722|Kctd13|233877|potassium channel tetramerisation domain containing 13	NM_172747|Kctd13|233877|potassium channel tetramerisation domain containing 13	BC079607|Kctd13|233877|potassium channel tetramerisation domain containing 13	AF534881|Kctd13|233877|potassium channel tetramerisation domain containing 13
mm9_v1_chrX_-_154481041_154481154	3.95419	NHLH1,2.p2	BC043093|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2	BC060716|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2	NM_177751|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2	AK122399|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2	AK141544|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2
mm9_v1_chr19_-_10379342_10379355	3.95174	NHLH1,2.p2	AK147384|Dagla|269060|diacylglycerol lipase, alpha
mm9_v1_chr11_+_68505416_68505481	3.94818	NHLH1,2.p2	NM_175260|Myh10|77579|myosin, heavy polypeptide 10, non-muscle
mm9_v1_chr15_+_74346835_74346839	3.94646	NHLH1,2.p2	AK147494|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr5_+_89012547_89012592	3.93463	NHLH1,2.p2	AK018184|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr7_+_137836057_137836069	3.92495	NHLH1,2.p2	AB041546|Tacc2|57752|transforming, acidic coiled-coil containing protein 2	NM_021314|Tacc2|57752|transforming, acidic coiled-coil containing protein 2
mm9_v1_chr16_-_31948214_31948358	3.91597	NHLH1,2.p2	
mm9_v1_chr4_-_109959185_109959241	3.90976	NHLH1,2.p2	D31953|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK014133|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	DQ437511|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr2_+_123915670_123915704	3.90545	NHLH1,2.p2	AK122515|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr15_+_98465328_98465599	3.90089	NHLH1,2.p2	U20372|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit	AF498245|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit	AF498246|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit
mm9_v1_chr14_+_104049411_104049445	3.89409	NHLH1,2.p2	AK036190|Slain1|105439|SLAIN motif family, member 1
mm9_v1_chr1_-_95532242_95532249	3.89389	NHLH1,2.p2	AK152917|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr1_+_91351373_91351428	3.88576	NHLH1,2.p2	AK147503|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	NM_001037136|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	NM_178119|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	AK046523|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	AK129289|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm9_v1_chr18_+_36446680_36446818	3.88482	NHLH1,2.p2	AF017631|Pura|19290|purine rich element binding protein A
mm9_v1_chr18_-_16967100_16967238	3.88464	NHLH1,2.p2	AB008811|Cdh2|12558|cadherin 2	M31131|Cdh2|12558|cadherin 2
mm9_v1_chr1_-_133964541_133964638	3.87785	NHLH1,2.p2	AK162495|Mfsd4|213006|major facilitator superfamily domain containing 4	AK048692|Mfsd4|213006|major facilitator superfamily domain containing 4	NM_001114662|Mfsd4|213006|major facilitator superfamily domain containing 4	NM_172510|Mfsd4|213006|major facilitator superfamily domain containing 4
mm9_v1_chr7_-_51926142_51926212	3.87723	NHLH1,2.p2	AY363100|Myh14|71960|myosin, heavy polypeptide 14
mm9_v1_chr2_+_164313584_164313634	3.87509	NHLH1,2.p2	NM_001048229|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr4_+_33069972_33070146	3.87383	NHLH1,2.p2	NM_027491|Rragd|52187|Ras-related GTP binding D	AF490406|Rragd|52187|Ras-related GTP binding D
mm9_v1_chr15_-_36426543_36426556	3.87266	NHLH1,2.p2	BC035553|Ankrd46|68839|ankyrin repeat domain 46	NM_175134|Ankrd46|68839|ankyrin repeat domain 46
mm9_v1_chr3_-_138738152_138738164	3.86852	NHLH1,2.p2	AK158465|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	NM_001040690|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	NM_145544|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	AK172052|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1
mm9_v1_chr7_-_31230564_31230571	3.85975	NHLH1,2.p2	L04538|Aplp1|11803|amyloid beta (A4) precursor-like protein 1
mm9_v1_chr15_+_39491073_39491119	3.85518	NHLH1,2.p2	AK054553|Rims2|116838|regulating synaptic membrane exocytosis 2	AK032619|Rims2|116838|regulating synaptic membrane exocytosis 2
mm9_v1_chr15_+_98465193_98465247	3.8464	NHLH1,2.p2	NM_007581|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit	AK148088|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit
mm9_v1_chr10_+_40657980_40658124	3.83756	NHLH1,2.p2	AK080786|Wasf1|83767|WASP family 1
mm9_v1_chr10_+_78243274_78243338	3.83735	NHLH1,2.p2	BC138120|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6	BC138140|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
mm9_v1_chr11_+_29592946_29593072	3.82979	NHLH1,2.p2	AK220511|Rtn4|68585|reticulon 4	AY102281|Rtn4|68585|reticulon 4	AY102282|Rtn4|68585|reticulon 4	AY102284|Rtn4|68585|reticulon 4	AY114152|Rtn4|68585|reticulon 4	AY114153|Rtn4|68585|reticulon 4	AK034902|Rtn4|68585|reticulon 4	BC056373|Rtn4|68585|reticulon 4
mm9_v1_chr7_-_31230577_31230646	3.82809	NHLH1,2.p2	BC021877|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	NM_007467|Aplp1|11803|amyloid beta (A4) precursor-like protein 1
mm9_v1_chr15_-_63891810_63892112	3.82454	NHLH1,2.p2	AK075613|Fam49b|223601|family with sequence similarity 49, member B	AK043641|Fam49b|223601|family with sequence similarity 49, member B	AK028062|Fam49b|223601|family with sequence similarity 49, member B	NM_144846|Fam49b|223601|family with sequence similarity 49, member B
mm9_v1_chr17_-_45823145_45823192	3.82342	NHLH1,2.p2	NM_198167|Tmem63b|224807|transmembrane protein 63b	AK159673|Tmem63b|224807|transmembrane protein 63b
mm9_v1_chr19_+_4855178_4855267	3.82296	NHLH1,2.p2	AF197480|Ctsf|56464|cathepsin F	BC051131|Ctsf|56464|cathepsin F	AF136280|Ctsf|56464|cathepsin F	BC058758|Ctsf|56464|cathepsin F	AK017474|Ctsf|56464|cathepsin F	AK075862|Ctsf|56464|cathepsin F	AJ131851|Ctsf|56464|cathepsin F
mm9_v1_chr2_-_32702729_32702816	3.81047	NHLH1,2.p2	NM_009295|Stxbp1|20910|syntaxin binding protein 1	NM_001113569|Stxbp1|20910|syntaxin binding protein 1
mm9_v1_chr15_-_83936038_83936094	3.8086	NHLH1,2.p2	AK010293|Sult4a1|29859|sulfotransferase family 4A, member 1	AK003034|Sult4a1|29859|sulfotransferase family 4A, member 1	AF059257|Sult4a1|29859|sulfotransferase family 4A, member 1	BC051132|Sult4a1|29859|sulfotransferase family 4A, member 1	AK046368|Sult4a1|29859|sulfotransferase family 4A, member 1	AK032195|Sult4a1|29859|sulfotransferase family 4A, member 1	AK159034|Sult4a1|29859|sulfotransferase family 4A, member 1
mm9_v1_chr6_+_115084919_115085009	3.80486	NHLH1,2.p2	AF096867|Syn2|20965|synapsin II	NM_001111015|Syn2|20965|synapsin II	NM_013681|Syn2|20965|synapsin II	BC053427|Syn2|20965|synapsin II
mm9_v1_chr10_+_79167197_79167254	3.79896	NHLH1,2.p2	AY089967|Bsg|12215|basigin	AK002332|Bsg|12215|basigin	AK011364|Bsg|12215|basigin	AK147225|Bsg|12215|basigin	D00611|Bsg|12215|basigin	S63813|Bsg|12215|basigin	Y16256|Bsg|12215|basigin
mm9_v1_chr7_+_137836116_137836140	3.79534	NHLH1,2.p2	AK165194|Tacc2|57752|transforming, acidic coiled-coil containing protein 2
mm9_v1_chr9_-_56008770_56008818	3.77744	NHLH1,2.p2	AK159914|Tspan3|56434|tetraspanin 3
mm9_v1_chr17_-_24826812_24826871	3.76756	NHLH1,2.p2	AK048753|Syngr3|20974|synaptogyrin 3	AK082167|Syngr3|20974|synaptogyrin 3	BC025022|Syngr3|20974|synaptogyrin 3	AK080129|Syngr3|20974|synaptogyrin 3	AK087538|Syngr3|20974|synaptogyrin 3
mm9_v1_chr15_+_41620484_41620584	3.76539	NHLH1,2.p2	NM_001130165|Oxr1|170719|oxidation resistance 1	BC089183|Oxr1|170719|oxidation resistance 1
mm9_v1_chr9_-_45714959_45715007	3.76353	NHLH1,2.p2	AK051527|Rnf214|235315|ring finger protein 214	NM_178709|Rnf214|235315|ring finger protein 214	AK046997|Rnf214|235315|ring finger protein 214	AK030208|Rnf214|235315|ring finger protein 214
mm9_v1_chr7_-_31230463_31230562	3.75756	NHLH1,2.p2	BC106158|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	AK170818|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	AK160871|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	AK154992|Aplp1|11803|amyloid beta (A4) precursor-like protein 1
mm9_v1_chr11_+_87394647_87394667	3.75576	NHLH1,2.p2	AB078010|Sept4|18952|septin 4
mm9_v1_chr19_-_59018112_59018143	3.74317	NHLH1,2.p2	AK076683|Hspa12a|73442|heat shock protein 12A	AK076668|Hspa12a|73442|heat shock protein 12A	AK087732|Hspa12a|73442|heat shock protein 12A
mm9_v1_chr18_+_38578583_38578694	3.73338	NHLH1,2.p2	AF220209|Ndfip1|65113|Nedd4 family interacting protein 1	AK050560|Ndfip1|65113|Nedd4 family interacting protein 1	BC026372|Ndfip1|65113|Nedd4 family interacting protein 1	NM_022996|Ndfip1|65113|Nedd4 family interacting protein 1	BC020359|Ndfip1|65113|Nedd4 family interacting protein 1
mm9_v1_chr9_-_56008819_56008825	3.72164	NHLH1,2.p2	AK159418|Tspan3|56434|tetraspanin 3
mm9_v1_chr12_-_17183693_17183693	3.72074	NHLH1,2.p2	NM_201531|Kcnf1|382571|potassium voltage-gated channel, subfamily F, member 1
mm9_v1_chr4_-_109959366_109959438	3.71137	NHLH1,2.p2	BC048159|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163399|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_010488|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr3_+_68298129_68298184	3.70412	NHLH1,2.p2	AK146930|Schip1|30953|schwannomin interacting protein 1	AK168005|Schip1|30953|schwannomin interacting protein 1
mm9_v1_chr10_+_79167255_79167267	3.69819	NHLH1,2.p2	BC010270|Bsg|12215|basigin
mm9_v1_chr18_+_67247984_67247998	3.69698	NHLH1,2.p2	AK045484|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type	BC078439|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type	NM_177137|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type
mm9_v1_chr14_-_24823370_24823426	3.69363	NHLH1,2.p2	AK142894|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	BC065068|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	NM_010610|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
mm9_v1_chr11_+_70658310_70658476	3.69286	NHLH1,2.p2	AK205489|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AB001750|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	D86066|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	BC129853|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	BC129854|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AF248489|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AF248490|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1
mm9_v1_chr16_+_17276720_17276769	3.69186	NHLH1,2.p2	BC058760|Tmem191c|224019|transmembrane protein 191C
mm9_v1_chr16_+_94592373_94592458	3.68478	NHLH1,2.p2	AK165850|Ttc3|22129|tetratricopeptide repeat domain 3	AK166120|Ttc3|22129|tetratricopeptide repeat domain 3	BC019173|Ttc3|22129|tetratricopeptide repeat domain 3	BC057207|Ttc3|22129|tetratricopeptide repeat domain 3	AK084201|Ttc3|22129|tetratricopeptide repeat domain 3	AK166164|Ttc3|22129|tetratricopeptide repeat domain 3	AK166298|Ttc3|22129|tetratricopeptide repeat domain 3	AK089974|Ttc3|22129|tetratricopeptide repeat domain 3	BC037654|Ttc3|22129|tetratricopeptide repeat domain 3	AK220495|Ttc3|22129|tetratricopeptide repeat domain 3
mm9_v1_chr9_-_56008595_56008764	3.67937	NHLH1,2.p2	AK089494|Tspan3|56434|tetraspanin 3	AK154919|Tspan3|56434|tetraspanin 3	AB009021|Tspan3|56434|tetraspanin 3	AF133427|Tspan3|56434|tetraspanin 3	AB072450|Tspan3|56434|tetraspanin 3	AK053325|Tspan3|56434|tetraspanin 3	AK141951|Tspan3|56434|tetraspanin 3	AK006798|Tspan3|56434|tetraspanin 3	AK152175|Tspan3|56434|tetraspanin 3
mm9_v1_chr11_+_29593657_29593773	3.67825	NHLH1,2.p2	AK211699|Rtn4|68585|reticulon 4	AK218123|Rtn4|68585|reticulon 4	AY102280|Rtn4|68585|reticulon 4	NM_194051|Rtn4|68585|reticulon 4
mm9_v1_chr2_+_14525932_14526000	3.67529	NHLH1,2.p2	AK034054|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	NM_023116|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	FM872408|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	BC109156|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	BC109157|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit
mm9_v1_chr9_-_62384846_62384857	3.67218	NHLH1,2.p2	AK087414|Coro2b|235431|coronin, actin binding protein, 2B	NM_175484|Coro2b|235431|coronin, actin binding protein, 2B
mm9_v1_chr1_-_79855229_79855247	3.66115	NHLH1,2.p2	NM_009255|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2
mm9_v1_chr18_+_32536846_32536879	3.65322	NHLH1,2.p2	NM_001083334|Bin1|30948|bridging integrator 1	NM_009668|Bin1|30948|bridging integrator 1
mm9_v1_chr15_-_99358387_99358595	3.65293	NHLH1,2.p2	AK158960|Faim2|72393|Fas apoptotic inhibitory molecule 2	NM_001038658|Faim2|72393|Fas apoptotic inhibitory molecule 2	NM_028224|Faim2|72393|Fas apoptotic inhibitory molecule 2	BC072560|Faim2|72393|Fas apoptotic inhibitory molecule 2
mm9_v1_chr10_-_79076744_79076769	3.64599	NHLH1,2.p2	BC089008|C2cd4c|237397|C2 calcium-dependent domain containing 4C	NM_198614|C2cd4c|237397|C2 calcium-dependent domain containing 4C	AK029946|C2cd4c|237397|C2 calcium-dependent domain containing 4C	NM_001168624|C2cd4c|237397|C2 calcium-dependent domain containing 4C
mm9_v1_chr8_-_88224652_88224792	3.63987	NHLH1,2.p2	BC151050|Neto2|74513|neuropilin (NRP) and tolloid (TLL)-like 2	BC157941|Neto2|74513|neuropilin (NRP) and tolloid (TLL)-like 2	BC172104|Neto2|74513|neuropilin (NRP) and tolloid (TLL)-like 2	BC172139|Neto2|74513|neuropilin (NRP) and tolloid (TLL)-like 2	AK081462|Neto2|74513|neuropilin (NRP) and tolloid (TLL)-like 2	AK017458|Neto2|74513|neuropilin (NRP) and tolloid (TLL)-like 2
mm9_v1_chr1_-_79855209_79855213	3.63923	NHLH1,2.p2	AK045954|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK047856|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK051332|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK159687|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK160700|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK164270|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	X70296|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2
mm9_v1_chr12_-_42212538_42212554	3.6391	NHLH1,2.p2	AK036316|Lrrn3|16981|leucine rich repeat protein 3, neuronal	D49802|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr1_-_94998392_94998412	3.63877	NHLH1,2.p2	AK138237|Kif1a|16560|kinesin family member 1A	BC034863|Kif1a|16560|kinesin family member 1A	D29951|Kif1a|16560|kinesin family member 1A	AK147640|Kif1a|16560|kinesin family member 1A
mm9_v1_chr5_+_118426792_118426794	3.635	NHLH1,2.p2	AB093270|Fbxo21|231670|F-box protein 21
mm9_v1_chrX_-_61530170_61530177	3.63317	NHLH1,2.p2	AK053065|Slitrk4|245446|SLIT and NTRK-like family, member 4	NM_178740|Slitrk4|245446|SLIT and NTRK-like family, member 4
mm9_v1_chrX_+_132373572_132373652	3.62256	NHLH1,2.p2	NM_001163015|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	NM_001163016|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	NM_001163017|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	AK030638|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	AK081764|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	BC117924|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	BC117923|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2
mm9_v1_chr8_+_86423968_86424035	3.62226	NHLH1,2.p2	NM_181039|Lphn1|330814|latrophilin 1	AK147455|Lphn1|330814|latrophilin 1
mm9_v1_chr7_+_137789668_137789799	3.60351	NHLH1,2.p2	AK145721|Tacc2|57752|transforming, acidic coiled-coil containing protein 2	AK050985|Tacc2|57752|transforming, acidic coiled-coil containing protein 2	AK137273|Tacc2|57752|transforming, acidic coiled-coil containing protein 2
mm9_v1_chr11_+_87394543_87394570	3.60156	NHLH1,2.p2	AK135143|Sept4|18952|septin 4	BC055101|Sept4|18952|septin 4	BC037673|Sept4|18952|septin 4
mm9_v1_chr12_-_77923303_77923517	3.59828	NHLH1,2.p2	AB232610|Rab15|104886|RAB15, member RAS oncogene family	AK158637|Rab15|104886|RAB15, member RAS oncogene family	BC013790|Rab15|104886|RAB15, member RAS oncogene family	AK158768|Rab15|104886|RAB15, member RAS oncogene family	BC027769|Rab15|104886|RAB15, member RAS oncogene family	NM_134050|Rab15|104886|RAB15, member RAS oncogene family
mm9_v1_chr8_-_30330079_30330107	3.58798	NHLH1,2.p2	AJ487854|Unc5d|210801|unc-5 homolog D (C. elegans)	NM_153135|Unc5d|210801|unc-5 homolog D (C. elegans)
mm9_v1_chr2_+_164312023_164312078	3.58627	NHLH1,2.p2	BC019947|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2	AY187289|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr17_-_27650285_27650347	3.57538	NHLH1,2.p2	BC072635|Grm4|268934|glutamate receptor, metabotropic 4
mm9_v1_chr8_+_35217685_35217743	3.57079	NHLH1,2.p2	AK007787|Tmem66|67887|transmembrane protein 66	AK075744|Tmem66|67887|transmembrane protein 66	AK088728|Tmem66|67887|transmembrane protein 66
mm9_v1_chr17_+_5492538_5492652	3.56025	NHLH1,2.p2	BC059814|Zdhhc14|224454|zinc finger, DHHC domain containing 14	AK080845|Zdhhc14|224454|zinc finger, DHHC domain containing 14	AK036699|Zdhhc14|224454|zinc finger, DHHC domain containing 14	NM_146073|Zdhhc14|224454|zinc finger, DHHC domain containing 14	AK041648|Zdhhc14|224454|zinc finger, DHHC domain containing 14	AK046719|Zdhhc14|224454|zinc finger, DHHC domain containing 14
mm9_v1_chr15_-_27955680_27955732	3.55493	NHLH1,2.p2	BC067059|Trio|223435|triple functional domain (PTPRF interacting)
mm9_v1_chr3_+_137530638_137530776	3.55338	NHLH1,2.p2	NM_001033155|Dnajb14|70604|DnaJ (Hsp40) homolog, subfamily B, member 14	AK017735|Dnajb14|70604|DnaJ (Hsp40) homolog, subfamily B, member 14
mm9_v1_chr18_-_43059156_43059171	3.55036	NHLH1,2.p2	AK079059|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm9_v1_chr5_+_89012537_89012542	3.54563	NHLH1,2.p2	AK013185|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chrX_+_5624624_5624624	3.54248	NHLH1,2.p2	AK048263|Nudt11|58242|nudix (nucleoside diphosphate linked moiety X)-type motif 11	NM_021431|Nudt11|58242|nudix (nucleoside diphosphate linked moiety X)-type motif 11
mm9_v1_chr18_-_13021181_13021221	3.53769	NHLH1,2.p2	AK168366|Osbpl1a|64291|oxysterol binding protein-like 1A	BC092247|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr8_-_89996089_89996284	3.52462	NHLH1,2.p2	AK161846|Cbln1|12404|cerebellin 1 precursor protein	BC051956|Cbln1|12404|cerebellin 1 precursor protein	BC055730|Cbln1|12404|cerebellin 1 precursor protein	BC132120|Cbln1|12404|cerebellin 1 precursor protein	BC132122|Cbln1|12404|cerebellin 1 precursor protein
mm9_v1_chr11_-_33893151_33893192	3.51478	NHLH1,2.p2	AK048178|Kcnip1|70357|Kv channel-interacting protein 1	AK081845|Kcnip1|70357|Kv channel-interacting protein 1	DQ148494|Kcnip1|70357|Kv channel-interacting protein 1	NM_001190886|Kcnip1|70357|Kv channel-interacting protein 1
mm9_v1_chr17_+_43938789_43938843	3.51346	NHLH1,2.p2	NM_207649|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr5_-_136386767_136386839	3.51219	NHLH1,2.p2	AK192492|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr18_+_32536882_32536891	3.51154	NHLH1,2.p2	U60884|Bin1|30948|bridging integrator 1
mm9_v1_chrX_-_148776674_148776969	3.50351	NHLH1,2.p2	BC004006|Tspyl2|52808|TSPY-like 2	BC043694|Tspyl2|52808|TSPY-like 2	AY273809|Tspyl2|52808|TSPY-like 2	BC054393|Tspyl2|52808|TSPY-like 2	AK018700|Tspyl2|52808|TSPY-like 2
mm9_v1_chr9_-_56008828_56008912	3.49814	NHLH1,2.p2	AK159621|Tspan3|56434|tetraspanin 3	AK159324|Tspan3|56434|tetraspanin 3	AK169068|Tspan3|56434|tetraspanin 3	BC043072|Tspan3|56434|tetraspanin 3	AK146130|Tspan3|56434|tetraspanin 3	AK168231|Tspan3|56434|tetraspanin 3	NM_019793|Tspan3|56434|tetraspanin 3
mm9_v1_chr3_-_97628441_97628543	3.49375	NHLH1,2.p2	AK031066|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_001110163|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr14_-_65716932_65716942	3.47507	NHLH1,2.p2	NM_018788|Extl3|54616|exostoses (multiple)-like 3
mm9_v1_chr9_+_15043658_15043696	3.47361	NHLH1,2.p2	AK161045|2200002K05Rik|69137|RIKEN cDNA 2200002K05 gene
mm9_v1_chrX_-_132602648_132602774	3.46746	NHLH1,2.p2	AF097439|Bex2|12069|brain expressed X-linked 2	BC027529|Bex2|12069|brain expressed X-linked 2	AK132005|Bex2|12069|brain expressed X-linked 2	NM_009749|Bex2|12069|brain expressed X-linked 2
mm9_v1_chr1_+_50984361_50984403	3.46672	NHLH1,2.p2	AB041565|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	AK029307|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	NM_019790|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	AK076254|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	AK135038|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	BC034850|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	AB017270|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2
mm9_v1_chr14_-_71035662_71035784	3.46449	NHLH1,2.p2	AK149301|Epb4.9|13829|erythrocyte protein band 4.9	AK158744|Epb4.9|13829|erythrocyte protein band 4.9
mm9_v1_chr7_+_133920438_133920526	3.45317	NHLH1,2.p2	AK003371|Ypel3|66090|yippee-like 3 (Drosophila)	NM_025347|Ypel3|66090|yippee-like 3 (Drosophila)	NM_026875|Ypel3|66090|yippee-like 3 (Drosophila)	AF523353|Ypel3|66090|yippee-like 3 (Drosophila)	AK002925|Ypel3|66090|yippee-like 3 (Drosophila)	BC009171|Ypel3|66090|yippee-like 3 (Drosophila)
mm9_v1_chr6_-_115201790_115201797	3.44277	NHLH1,2.p2	AF282730|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr13_-_69138418_69138432	3.43396	NHLH1,2.p2	AK132312|Adcy2|210044|adenylate cyclase 2	NM_153534|Adcy2|210044|adenylate cyclase 2
mm9_v1_chr4_-_123395382_123395431	3.43169	NHLH1,2.p2	BC002163|BC002163|170658|NADH dehydrogenase Fe-S protein 5 pseudogene	AK152845|Ndufs5|595136|NADH dehydrogenase (ubiquinone) Fe-S protein 5	AK148505|Ndufs5|595136|NADH dehydrogenase (ubiquinone) Fe-S protein 5	NM_001030274|Ndufs5|595136|NADH dehydrogenase (ubiquinone) Fe-S protein 5
mm9_v1_chr18_+_38611212_38611226	3.42792	NHLH1,2.p2	
mm9_v1_chr10_-_40021983_40022002	3.42693	NHLH1,2.p2	AK146840|Amd1|11702|S-adenosylmethionine decarboxylase 1	AK166187|Amd1|11702|S-adenosylmethionine decarboxylase 1	AK168165|Amd1|11702|S-adenosylmethionine decarboxylase 1	AK171238|Amd1|11702|S-adenosylmethionine decarboxylase 1	D12780|Amd1|11702|S-adenosylmethionine decarboxylase 1	NM_007444|Amd2|100041585|S-adenosylmethionine decarboxylase 2	NM_009665|Amd1|11702|S-adenosylmethionine decarboxylase 1
mm9_v1_chr6_-_92431385_92431385	3.41351	NHLH1,2.p2	AK020123|Prickle2|243548|prickle homolog 2 (Drosophila)	AK032631|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134460|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr7_-_31147752_31147790	3.4043	NHLH1,2.p2	BC094593|Lrfn3|233067|leucine rich repeat and fibronectin type III domain containing 3	AK040916|Lrfn3|233067|leucine rich repeat and fibronectin type III domain containing 3	NM_175478|Lrfn3|233067|leucine rich repeat and fibronectin type III domain containing 3
mm9_v1_chr8_-_67171692_67171792	3.404	NHLH1,2.p2	U23184|Cpe|12876|carboxypeptidase E	X61232|Cpe|12876|carboxypeptidase E
mm9_v1_chr6_-_21802087_21802170	3.40013	NHLH1,2.p2	BC065152|Tspan12|269831|tetraspanin 12	AK033554|Tspan12|269831|tetraspanin 12	BC068240|Tspan12|269831|tetraspanin 12
mm9_v1_chr7_-_146374363_146374372	3.39264	NHLH1,2.p2	BC026457|Stk32c|57740|serine/threonine kinase 32C	AK046439|Stk32c|57740|serine/threonine kinase 32C	AB041542|Stk32c|57740|serine/threonine kinase 32C
mm9_v1_chr11_+_71564481_71564540	3.38767	NHLH1,2.p2	BC030477|Wscd1|216881|WSC domain containing 1
mm9_v1_chrX_-_42143166_42143193	3.38495	NHLH1,2.p2	BC068319|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1	AK034343|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1	AK039767|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1
mm9_v1_chr7_+_112788953_112788961	3.38346	NHLH1,2.p2	AK010994|Fxc1|14356|fractured callus expressed transcript 1
mm9_v1_chr11_+_6963421_6963491	3.38332	NHLH1,2.p2	NM_009622|Adcy1|432530|adenylate cyclase 1
mm9_v1_chr2_-_75776467_75776587	3.37394	NHLH1,2.p2	AK147134|Ttc30b|72421|tetratricopeptide repeat domain 30B	AK011097|Ttc30b|72421|tetratricopeptide repeat domain 30B	BC151060|Ttc30b|72421|tetratricopeptide repeat domain 30B	BC151184|Ttc30b|72421|tetratricopeptide repeat domain 30B	NM_028235|Ttc30b|72421|tetratricopeptide repeat domain 30B	BC157929|Ttc30b|72421|tetratricopeptide repeat domain 30B
mm9_v1_chr2_+_72018059_72018093	3.37018	NHLH1,2.p2	AK004874|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4
mm9_v1_chr18_+_82754586_82754645	3.36736	NHLH1,2.p2	AK194642|Mbp|17196|myelin basic protein
mm9_v1_chr17_-_57184507_57184537	3.36011	NHLH1,2.p2	BC060049|Slc25a23|66972|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
mm9_v1_chr8_+_65430028_65430291	3.35973	NHLH1,2.p2	AJ278998|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK049843|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK220280|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK013644|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	BC017601|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	NM_023689|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK164338|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	BC053334|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3
mm9_v1_chrX_+_45872593_45872777	3.35384	NHLH1,2.p2	D83279|Rab33a|19337|RAB33A, member of RAS oncogene family	NM_011228|Rab33a|19337|RAB33A, member of RAS oncogene family	BC104390|Rab33a|19337|RAB33A, member of RAS oncogene family	BC104391|Rab33a|19337|RAB33A, member of RAS oncogene family	AB232628|Rab33a|19337|RAB33A, member of RAS oncogene family
mm9_v1_chr13_-_69138229_69138235	3.35267	NHLH1,2.p2	AK122432|Adcy2|210044|adenylate cyclase 2
mm9_v1_chr2_+_83652846_83652884	3.34829	NHLH1,2.p2	AK052508|Fam171b|241520|family with sequence similarity 171, member B	BC113787|Fam171b|241520|family with sequence similarity 171, member B	NM_175514|Fam171b|241520|family with sequence similarity 171, member B
mm9_v1_chrX_-_92361778_92361824	3.3371	NHLH1,2.p2	AK038840|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	AK122280|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	AK139416|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	NM_001033329|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9
mm9_v1_chr5_-_68238444_68238587	3.32788	NHLH1,2.p2	BC129872|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	U75321|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK220560|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr10_+_7309565_7309776	3.32318	NHLH1,2.p2	AK048919|Lrp11|237253|low density lipoprotein receptor-related protein 11	NM_172784|Lrp11|237253|low density lipoprotein receptor-related protein 11	AK036676|Lrp11|237253|low density lipoprotein receptor-related protein 11	AK050544|Lrp11|237253|low density lipoprotein receptor-related protein 11	AK031994|Lrp11|237253|low density lipoprotein receptor-related protein 11	BC059874|Lrp11|237253|low density lipoprotein receptor-related protein 11
mm9_v1_chr2_-_33226946_33226968	3.31605	NHLH1,2.p2	BC072656|Ralgps1|241308|Ral GEF with PH domain and SH3 binding motif 1	AK170248|Ralgps1|241308|Ral GEF with PH domain and SH3 binding motif 1
mm9_v1_chr7_+_35971403_35971489	3.31276	NHLH1,2.p2	BC027516|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	NM_017394|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	AK031867|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	BC054765|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	AB026688|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10
mm9_v1_chr19_-_6235784_6235886	3.29464	NHLH1,2.p2	AK171041|Ppp2r5b|225849|protein phosphatase 2, regulatory subunit B (B56), beta isoform	AK155872|Ppp2r5b|225849|protein phosphatase 2, regulatory subunit B (B56), beta isoform	AK171178|Ppp2r5b|225849|protein phosphatase 2, regulatory subunit B (B56), beta isoform	NM_198168|Ppp2r5b|225849|protein phosphatase 2, regulatory subunit B (B56), beta isoform	AK034167|Ppp2r5b|225849|protein phosphatase 2, regulatory subunit B (B56), beta isoform	AK171430|Ppp2r5b|225849|protein phosphatase 2, regulatory subunit B (B56), beta isoform
mm9_v1_chr6_-_136824277_136824306	3.28096	NHLH1,2.p2	BC069922|Mgp|17313|matrix Gla protein	BC036991|Mgp|17313|matrix Gla protein	BC079478|Mgp|17313|matrix Gla protein
mm9_v1_chr4_+_104829963_104829965	3.27913	NHLH1,2.p2	BC005558|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chrX_-_61530035_61530158	3.27718	NHLH1,2.p2	BC117890|Slitrk4|245446|SLIT and NTRK-like family, member 4	BC117891|Slitrk4|245446|SLIT and NTRK-like family, member 4	AK046301|Slitrk4|245446|SLIT and NTRK-like family, member 4	AK039763|Slitrk4|245446|SLIT and NTRK-like family, member 4	AK032263|Slitrk4|245446|SLIT and NTRK-like family, member 4
mm9_v1_chr5_-_36826896_36826947	3.27332	NHLH1,2.p2	NM_001170454|Tada2b|231151|transcriptional adaptor 2B
mm9_v1_chr11_-_115228986_115229036	3.25875	NHLH1,2.p2	AK044395|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene	AB087506|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene	AK049861|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene	BC024617|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene	NM_175454|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene
mm9_v1_chr2_+_48805027_48805131	3.2483	NHLH1,2.p2	NM_029924|Mbd5|109241|methyl-CpG binding domain protein 5	AK155574|Mbd5|109241|methyl-CpG binding domain protein 5
mm9_v1_chr16_-_10543121_10543218	3.24607	NHLH1,2.p2	BC017551|Dexi|58239|dexamethasone-induced transcript	AK007644|Dexi|58239|dexamethasone-induced transcript	AK032104|Dexi|58239|dexamethasone-induced transcript	NM_021428|Dexi|58239|dexamethasone-induced transcript
mm9_v1_chr7_-_112729716_112729793	3.23442	NHLH1,2.p2	AF206720|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1	AK164140|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1	AK083830|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1
mm9_v1_chr5_+_118426774_118426787	3.23308	NHLH1,2.p2	AK049723|Fbxo21|231670|F-box protein 21	NM_145564|Fbxo21|231670|F-box protein 21	AK076521|Fbxo21|231670|F-box protein 21
mm9_v1_chr5_-_136410488_136410547	3.23155	NHLH1,2.p2	NM_018871|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr2_-_32702610_32702727	3.21881	NHLH1,2.p2	AF326545|Stxbp1|20910|syntaxin binding protein 1	AF326563|Stxbp1|20910|syntaxin binding protein 1	D45903|Stxbp1|20910|syntaxin binding protein 1	BC031728|Stxbp1|20910|syntaxin binding protein 1
mm9_v1_chr12_+_87165931_87165970	3.216	NHLH1,2.p2	AB093278|Ttll5|320244|tubulin tyrosine ligase-like family, member 5	AK046017|Ttll5|320244|tubulin tyrosine ligase-like family, member 5
mm9_v1_chr12_+_87165889_87165903	3.20987	NHLH1,2.p2	NM_001081423|Ttll5|320244|tubulin tyrosine ligase-like family, member 5
mm9_v1_chr15_-_75397243_75397344	3.20858	NHLH1,2.p2	AF127091|Ly6h|23934|lymphocyte antigen 6 complex, locus H	BC028758|Ly6h|23934|lymphocyte antigen 6 complex, locus H	NM_001135688|Ly6h|23934|lymphocyte antigen 6 complex, locus H	AK021002|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr16_-_85080242_85080258	3.2047	NHLH1,2.p2	BC005490|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr5_+_118426721_118426771	3.20426	NHLH1,2.p2	BC021871|Fbxo21|231670|F-box protein 21
mm9_v1_chr17_+_34093007_34093064	3.19686	NHLH1,2.p2	AX775735|Vps52|224705|vacuolar protein sorting 52 (yeast)
mm9_v1_chr13_-_58009653_58009693	3.18133	NHLH1,2.p2	AK049019|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	AK039058|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	X92864|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	AK036189|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166463|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166464|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166465|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166466|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_009262|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
mm9_v1_chr4_-_33037783_33037814	3.17827	NHLH1,2.p2	AK135024|Ankrd6|140577|ankyrin repeat domain 6	NM_001012451|Ankrd6|140577|ankyrin repeat domain 6
mm9_v1_chr8_+_35217677_35217684	3.1726	NHLH1,2.p2	BC024888|Tmem66|67887|transmembrane protein 66	AK163218|Tmem66|67887|transmembrane protein 66
mm9_v1_chrX_+_133200913_133200976	3.17205	NHLH1,2.p2	NM_001029978|Tceal3|594844|transcription elongation factor A (SII)-like 3	AK158996|Tceal3|594844|transcription elongation factor A (SII)-like 3
mm9_v1_chr7_-_147288290_147288306	3.17075	NHLH1,2.p2	BC028662|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	AK007494|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	AK042452|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	AK044731|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	AK079410|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	NM_026928|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene
mm9_v1_chr5_+_67137054_67137078	3.16405	NHLH1,2.p2	NM_001001980|Limch1|77569|LIM and calponin homology domains 1
mm9_v1_chr1_-_127808790_127808807	3.16196	NHLH1,2.p2	AB041649|Lypd1|72585|Ly6/Plaur domain containing 1	AK045592|Lypd1|72585|Ly6/Plaur domain containing 1	NM_145100|Lypd1|72585|Ly6/Plaur domain containing 1
mm9_v1_chr18_-_13020914_13021067	3.15758	NHLH1,2.p2	BC015075|Osbpl1a|64291|oxysterol binding protein-like 1A	BC046466|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr7_-_134164627_134164726	3.15638	NHLH1,2.p2	NM_001102563|Prrt2|69017|proline-rich transmembrane protein 2
mm9_v1_chrX_+_20281028_20281089	3.15501	NHLH1,2.p2	NM_145628|Usp11|236733|ubiquitin specific peptidase 11	AK031767|Usp11|236733|ubiquitin specific peptidase 11	AK166523|Usp11|236733|ubiquitin specific peptidase 11	AK049053|Usp11|236733|ubiquitin specific peptidase 11
mm9_v1_chr5_+_27231234_27231317	3.15141	NHLH1,2.p2	AK051708|Dpp6|13483|dipeptidylpeptidase 6	BC085154|Dpp6|13483|dipeptidylpeptidase 6	NM_001198886|Dpp6|13483|dipeptidylpeptidase 6
mm9_v1_chr7_-_146374392_146374419	3.14545	NHLH1,2.p2	NM_021302|Stk32c|57740|serine/threonine kinase 32C
mm9_v1_chr11_-_87172419_87172533	3.1432	NHLH1,2.p2	AK053696|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	BC138900|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	BC138903|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	NM_177167|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)
mm9_v1_chr2_-_121632749_121632811	3.13766	NHLH1,2.p2	AK054484|Frmd5|228564|FERM domain containing 5	BC062889|Frmd5|228564|FERM domain containing 5	AK146383|Frmd5|228564|FERM domain containing 5	AK048865|Frmd5|228564|FERM domain containing 5	NM_172673|Frmd5|228564|FERM domain containing 5
mm9_v1_chr8_+_72839642_72839751	3.11891	NHLH1,2.p2	AK053885|Lass1|93898|LAG1 homolog, ceramide synthase 1	NM_001163282|Gdf1|14559|growth differentiation factor 1	NM_138647|Lass1|93898|LAG1 homolog, ceramide synthase 1	M62301|Gdf1|14559|growth differentiation factor 1	AK162823|Gdf1|14559|growth differentiation factor 1	BC056973|Gdf1|14559|growth differentiation factor 1	BC094351|Gdf1|14559|growth differentiation factor 1	BC132318|Lass1|93898|LAG1 homolog, ceramide synthase 1
mm9_v1_chr8_-_88364656_88364675	3.11275	NHLH1,2.p2	AK009867|Itfg1|71927|integrin alpha FG-GAP repeat containing 1
mm9_v1_chrX_-_35605544_35605615	3.09929	NHLH1,2.p2	BC062956|Fam70a|245386|family with sequence similarity 70, member A	AK077178|Fam70a|245386|family with sequence similarity 70, member A	AK078264|Fam70a|245386|family with sequence similarity 70, member A	AK041985|Fam70a|245386|family with sequence similarity 70, member A	AK045375|Fam70a|245386|family with sequence similarity 70, member A
mm9_v1_chr6_-_126485370_126485572	3.09913	NHLH1,2.p2	BC021787|Kcna5|16493|potassium voltage-gated channel, shaker-related subfamily, member 5	AK146843|Kcna5|16493|potassium voltage-gated channel, shaker-related subfamily, member 5	AF108659|Kcna5|16493|potassium voltage-gated channel, shaker-related subfamily, member 5	L22218|Kcna5|16493|potassium voltage-gated channel, shaker-related subfamily, member 5	NM_145983|Kcna5|16493|potassium voltage-gated channel, shaker-related subfamily, member 5
mm9_v1_chr4_-_86876328_86876443	3.09768	NHLH1,2.p2	AK038800|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK136058|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	NM_172426|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr9_+_44947045_44947124	3.08653	NHLH1,2.p2	BC139399|Scn4b|399548|sodium channel, type IV, beta	BC139400|Scn4b|399548|sodium channel, type IV, beta	AY669079|Scn4b|399548|sodium channel, type IV, beta	NM_001013390|Scn4b|399548|sodium channel, type IV, beta
mm9_v1_chr12_-_88443285_88443488	3.06654	NHLH1,2.p2	AJ245945|Ngb|64242|neuroglobin	AK165775|Ngb|64242|neuroglobin	AK140173|Ngb|64242|neuroglobin	BC024263|Ngb|64242|neuroglobin	NM_022414|Ngb|64242|neuroglobin
mm9_v1_chr1_+_155747072_155747097	3.05384	NHLH1,2.p2	AK137969|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK159106|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK160670|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AY044241|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	NM_008131|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK162685|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK168493|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	BC015086|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	X16314|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)
mm9_v1_chr10_-_6979959_6980009	3.04945	NHLH1,2.p2	BC055717|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c
mm9_v1_chr9_+_43875175_43875249	3.04888	NHLH1,2.p2	AY255638|Usp2|53376|ubiquitin specific peptidase 2	AY255639|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chrX_-_148777014_148777028	3.04858	NHLH1,2.p2	NM_029836|Tspyl2|52808|TSPY-like 2
mm9_v1_chr5_+_36100605_36100668	3.04599	NHLH1,2.p2	AY274116|Ablim2|231148|actin-binding LIM protein 2	BC141125|Ablim2|231148|actin-binding LIM protein 2
mm9_v1_chr8_+_32200076_32200146	3.04406	NHLH1,2.p2	AK009781|Dusp26|66959|dual specificity phosphatase 26 (putative)	NM_025869|Dusp26|66959|dual specificity phosphatase 26 (putative)
mm9_v1_chr12_-_73509537_73509656	3.02768	NHLH1,2.p2	AB074899|Rtn1|104001|reticulon 1	CT010392|Rtn1|104001|reticulon 1	BC030455|Rtn1|104001|reticulon 1
mm9_v1_chr17_-_27270820_27270865	3.02163	NHLH1,2.p2	AK013521|2900010M23Rik|67267|RIKEN cDNA 2900010M23 gene	AK019014|2900010M23Rik|67267|RIKEN cDNA 2900010M23 gene	NM_026063|2900010M23Rik|67267|RIKEN cDNA 2900010M23 gene	BC030629|2900010M23Rik|67267|RIKEN cDNA 2900010M23 gene
mm9_v1_chr4_+_126530769_126530837	3.0189	NHLH1,2.p2	
mm9_v1_chr7_+_129776837_129777102	3.01805	NHLH1,2.p2	BC038148|Prkcb|18751|protein kinase C, beta	BC048553|Prkcb|18751|protein kinase C, beta
mm9_v1_chr10_+_34017221_34017318	3.01574	NHLH1,2.p2	NM_030203|Tspyl4|72480|TSPY-like 4	AK034070|Tspyl4|72480|TSPY-like 4	AK158197|Tspyl4|72480|TSPY-like 4	BC017540|Tspyl4|72480|TSPY-like 4	BC034656|Tspyl4|72480|TSPY-like 4	AK030740|Tspyl4|72480|TSPY-like 4	AK034414|Tspyl4|72480|TSPY-like 4	AK020999|Tspyl4|72480|TSPY-like 4
mm9_v1_chr13_-_52626022_52626049	3.00706	NHLH1,2.p2	BC086799|Diras2|68203|DIRAS family, GTP-binding RAS-like 2
mm9_v1_chrX_+_133527693_133527841	3.00323	NHLH1,2.p2	NM_001035509|Zcchc18|66995|zinc finger, CCHC domain containing 18	NM_001035510|Zcchc18|66995|zinc finger, CCHC domain containing 18	NM_025893|Zcchc18|66995|zinc finger, CCHC domain containing 18	AK005317|Zcchc18|66995|zinc finger, CCHC domain containing 18	BC017627|Zcchc18|66995|zinc finger, CCHC domain containing 18	AK134856|Zcchc18|66995|zinc finger, CCHC domain containing 18
mm9_v1_chr19_-_5510453_5510506	3.00107	NHLH1,2.p2	AK047234|Snx32|225861|sorting nexin 32	BC048922|Snx32|225861|sorting nexin 32	NM_001024560|Snx32|225861|sorting nexin 32	AK037118|Snx32|225861|sorting nexin 32	AK143441|Snx32|225861|sorting nexin 32
mm9_v1_chr13_-_69138164_69138176	2.99612	NHLH1,2.p2	BC037107|Adcy2|210044|adenylate cyclase 2
mm9_v1_chr10_-_77234069_77234069	2.99377	NHLH1,2.p2	NM_001101630|Gm3238|100041261|predicted gene 3238
mm9_v1_chr5_-_136387191_136387399	2.99331	NHLH1,2.p2	AK186358|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr17_-_15963372_15963555	2.99148	NHLH1,2.p2	BC138890|Rgmb|68799|RGM domain family, member B	AK035713|Rgmb|68799|RGM domain family, member B	AK046637|Rgmb|68799|RGM domain family, member B	AK080819|Rgmb|68799|RGM domain family, member B	BC096024|Rgmb|68799|RGM domain family, member B	AK030386|Rgmb|68799|RGM domain family, member B	AK047390|Rgmb|68799|RGM domain family, member B	BC030405|Rgmb|68799|RGM domain family, member B	AJ557514|Rgmb|68799|RGM domain family, member B	NM_178615|Rgmb|68799|RGM domain family, member B
mm9_v1_chr8_-_87296172_87296219	2.98822	NHLH1,2.p2	S81451|Nfix|18032|nuclear factor I/X
mm9_v1_chr3_+_84619399_84619498	2.98173	NHLH1,2.p2	BC085184|Fbxw7|50754|F-box and WD-40 domain protein 7	BC060620|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177773|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr5_+_36100508_36100541	2.9807	NHLH1,2.p2	AK154494|Ablim2|231148|actin-binding LIM protein 2	NM_001177696|Ablim2|231148|actin-binding LIM protein 2	NM_001177697|Ablim2|231148|actin-binding LIM protein 2	NM_001177698|Ablim2|231148|actin-binding LIM protein 2	NM_001177699|Ablim2|231148|actin-binding LIM protein 2	NM_001177700|Ablim2|231148|actin-binding LIM protein 2	NM_177678|Ablim2|231148|actin-binding LIM protein 2
mm9_v1_chr8_+_125641346_125641374	2.97852	NHLH1,2.p2	AK049823|Cpne7|102278|copine VII	BC119328|Cpne7|102278|copine VII	BC137595|Cpne7|102278|copine VII
mm9_v1_chr11_-_58752322_58752362	2.97424	NHLH1,2.p2	AK037991|Rnf187|108660|ring finger protein 187
mm9_v1_chr11_-_69418965_69419018	2.97307	NHLH1,2.p2	X16645|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide
mm9_v1_chr14_-_70553471_70553549	2.97007	NHLH1,2.p2	AK028194|2610301G19Rik|219158|RIKEN cDNA 2610301G19 gene	BC038346|2610301G19Rik|219158|RIKEN cDNA 2610301G19 gene
mm9_v1_chr15_+_91503654_91503682	2.96664	NHLH1,2.p2	AK052591|Lrrk2|66725|leucine-rich repeat kinase 2	NM_025730|Lrrk2|66725|leucine-rich repeat kinase 2
mm9_v1_chr3_+_90345082_90345194	2.96204	NHLH1,2.p2	BC020031|S100a16|67860|S100 calcium binding protein A16	NM_026416|S100a16|67860|S100 calcium binding protein A16
mm9_v1_chr11_+_101329457_101329578	2.95801	NHLH1,2.p2	BC139330|Rnd2|11858|Rho family GTPase 2	BC139331|Rnd2|11858|Rho family GTPase 2
mm9_v1_chr3_-_80717578_80717587	2.95651	NHLH1,2.p2	AK082578|Glrb|14658|glycine receptor, beta subunit
mm9_v1_chr8_+_125641197_125641276	2.94646	NHLH1,2.p2	AK162900|Cpne7|102278|copine VII	NM_170684|Cpne7|102278|copine VII
mm9_v1_chr9_+_45214037_45214172	2.93595	NHLH1,2.p2	AY626243|Fxyd2|11936|FXYD domain-containing ion transport regulator 2	AY626245|Fxyd2|11936|FXYD domain-containing ion transport regulator 2	AK002228|Fxyd2|11936|FXYD domain-containing ion transport regulator 2	NM_007503|Fxyd2|11936|FXYD domain-containing ion transport regulator 2	BC024614|Fxyd2|11936|FXYD domain-containing ion transport regulator 2	AK002215|Fxyd2|11936|FXYD domain-containing ion transport regulator 2
mm9_v1_chr2_-_25947466_25947505	2.93529	NHLH1,2.p2	AK147310|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	AK157946|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr1_+_134776927_134777014	2.93414	NHLH1,2.p2	AK036271|Lrrn2|16980|leucine rich repeat protein 2, neuronal	AK039216|Lrrn2|16980|leucine rich repeat protein 2, neuronal	NM_010732|Lrrn2|16980|leucine rich repeat protein 2, neuronal
mm9_v1_chr5_+_36100547_36100586	2.9283	NHLH1,2.p2	AJ748602|Ablim2|231148|actin-binding LIM protein 2	AJ748603|Ablim2|231148|actin-binding LIM protein 2	AK046243|Ablim2|231148|actin-binding LIM protein 2	AK046879|Ablim2|231148|actin-binding LIM protein 2	AK082707|Ablim2|231148|actin-binding LIM protein 2
mm9_v1_chr12_+_87165987_87166024	2.92355	NHLH1,2.p2	BC035276|Ttll5|320244|tubulin tyrosine ligase-like family, member 5
mm9_v1_chr5_+_30062502_30062604	2.91988	NHLH1,2.p2	AK144182|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK133805|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK152626|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK032039|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK151219|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK169332|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK005680|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AB028854|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AF035962|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	BC083349|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	BC003702|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK153091|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK151752|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK152632|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK169767|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK208008|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6
mm9_v1_chr7_-_147288242_147288252	2.9114	NHLH1,2.p2	AK163708|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene
mm9_v1_chr8_+_71612616_71612811	2.90609	NHLH1,2.p2	AK151200|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	NM_007509|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK170110|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK169155|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK169270|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK151322|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK151586|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK152718|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK152766|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159133|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159153|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159701|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK160080|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159986|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159586|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK169420|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK160854|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK146499|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK153341|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK168852|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	BC046302|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	BC012497|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	Y12634|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	BC085300|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK166669|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK182828|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK205457|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK206476|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209216|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209288|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209472|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209631|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK212223|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK213950|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK215019|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK215298|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK216725|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK217254|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK220015|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK214894|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK185732|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK191995|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2
mm9_v1_chr10_-_120748244_120748244	2.90578	NHLH1,2.p2	NM_029057|Tbc1d30|74694|TBC1 domain family, member 30
mm9_v1_chr6_-_12699189_12699252	2.89144	NHLH1,2.p2	NM_001164805|Thsd7a|330267|thrombospondin, type I, domain containing 7A
mm9_v1_chr4_-_77857594_77857662	2.88448	NHLH1,2.p2	AK086248|Ptprd|19266|protein tyrosine phosphatase, receptor type, D
mm9_v1_chr2_+_76244578_76244594	2.88397	NHLH1,2.p2	AK044411|Osbpl6|99031|oxysterol binding protein-like 6	NM_145525|Osbpl6|99031|oxysterol binding protein-like 6
mm9_v1_chr13_+_93195850_93196061	2.88359	NHLH1,2.p2	AK078203|Ankrd34b|218440|ankyrin repeat domain 34B	AK090387|Ankrd34b|218440|ankyrin repeat domain 34B	NM_175455|Ankrd34b|218440|ankyrin repeat domain 34B	BC096609|Ankrd34b|218440|ankyrin repeat domain 34B	BC119312|Ankrd34b|218440|ankyrin repeat domain 34B	BC119314|Ankrd34b|218440|ankyrin repeat domain 34B
mm9_v1_chr1_+_66221851_66221903	2.88103	NHLH1,2.p2	AK166380|Mtap2|17756|microtubule-associated protein 2	BC052446|Mtap2|17756|microtubule-associated protein 2	NM_001039934|Mtap2|17756|microtubule-associated protein 2	NM_008632|Mtap2|17756|microtubule-associated protein 2	BC150945|Mtap2|17756|microtubule-associated protein 2
mm9_v1_chr8_-_126383327_126383429	2.87711	NHLH1,2.p2	BC024705|1700054N08Rik|73420|RIKEN cDNA 1700054N08 gene	AK086180|1700054N08Rik|73420|RIKEN cDNA 1700054N08 gene
mm9_v1_chr15_-_99358024_99358174	2.87227	NHLH1,2.p2	AF468028|Faim2|72393|Fas apoptotic inhibitory molecule 2	AK013476|Faim2|72393|Fas apoptotic inhibitory molecule 2	BC032278|Faim2|72393|Fas apoptotic inhibitory molecule 2	AK129246|Faim2|72393|Fas apoptotic inhibitory molecule 2	AK081252|Faim2|72393|Fas apoptotic inhibitory molecule 2	AK147343|Faim2|72393|Fas apoptotic inhibitory molecule 2	AK136791|Faim2|72393|Fas apoptotic inhibitory molecule 2	AK030513|Faim2|72393|Fas apoptotic inhibitory molecule 2	AK080839|Faim2|72393|Fas apoptotic inhibitory molecule 2
mm9_v1_chr16_-_67621054_67621188	2.86998	NHLH1,2.p2	AK046800|Cadm2|239857|cell adhesion molecule 2	AK163636|Cadm2|239857|cell adhesion molecule 2	AK038842|Cadm2|239857|cell adhesion molecule 2	AK043760|Cadm2|239857|cell adhesion molecule 2	AK165030|Cadm2|239857|cell adhesion molecule 2	NM_001145977|Cadm2|239857|cell adhesion molecule 2	NM_178721|Cadm2|239857|cell adhesion molecule 2
mm9_v1_chr17_-_24826873_24826911	2.86606	NHLH1,2.p2	AF117207|Syngr3|20974|synaptogyrin 3	AK081164|Syngr3|20974|synaptogyrin 3	NM_011522|Syngr3|20974|synaptogyrin 3
mm9_v1_chrX_+_7305654_7305720	2.86201	NHLH1,2.p2	BC064757|Praf2|54637|PRA1 domain family 2	AK003344|Praf2|54637|PRA1 domain family 2	AK224918|Praf2|54637|PRA1 domain family 2	NM_138602|Praf2|54637|PRA1 domain family 2	AF229636|Praf2|54637|PRA1 domain family 2
mm9_v1_chr2_-_104250490_104250490	2.85832	NHLH1,2.p2	NM_001033347|D430041D05Rik|241589|RIKEN cDNA D430041D05 gene
mm9_v1_chrX_+_91881407_91881417	2.84274	NHLH1,2.p2	NM_008179|Gspt2|14853|G1 to S phase transition 2	AK050859|Gspt2|14853|G1 to S phase transition 2	AK019241|Gspt2|14853|G1 to S phase transition 2
mm9_v1_chr6_-_25639812_25639825	2.84033	NHLH1,2.p2	AK032525|Gpr37|14763|G protein-coupled receptor 37
mm9_v1_chr10_-_75322941_75323054	2.83988	NHLH1,2.p2	AK010691|Mif|17319|macrophage migration inhibitory factor	BC086928|Mif|17319|macrophage migration inhibitory factor	BC100605|Mif|17319|macrophage migration inhibitory factor	L02913|Mif|17319|macrophage migration inhibitory factor	AK152211|Mif|17319|macrophage migration inhibitory factor	BC024895|Mif|17319|macrophage migration inhibitory factor	L10613|Mif|17319|macrophage migration inhibitory factor	AK008939|Mif|17319|macrophage migration inhibitory factor	AK013328|Mif|17319|macrophage migration inhibitory factor	NM_010798|Mif|17319|macrophage migration inhibitory factor
mm9_v1_chr13_+_55050729_55050861	2.83445	NHLH1,2.p2	BC058084|Unc5a|107448|unc-5 homolog A (C. elegans)	AJ487852|Unc5a|107448|unc-5 homolog A (C. elegans)	NM_153131|Unc5a|107448|unc-5 homolog A (C. elegans)
mm9_v1_chr3_-_152331083_152331103	2.83418	NHLH1,2.p2	AK053807|Ak5|229949|adenylate kinase 5	NM_001081277|Ak5|229949|adenylate kinase 5
mm9_v1_chrX_+_130829929_130829942	2.82576	NHLH1,2.p2	AK005180|Tmem35|67564|transmembrane protein 35	AK018535|Tmem35|67564|transmembrane protein 35	AK043881|Tmem35|67564|transmembrane protein 35	AK042538|Tmem35|67564|transmembrane protein 35
mm9_v1_chr11_-_58752365_58752372	2.82339	NHLH1,2.p2	BC096522|Rnf187|108660|ring finger protein 187
mm9_v1_chr17_+_15533165_15533243	2.81348	NHLH1,2.p2	BC066088|Fam120b|67544|family with sequence similarity 120, member B	NM_024203|Fam120b|67544|family with sequence similarity 120, member B	BC085163|Fam120b|67544|family with sequence similarity 120, member B	AK078215|Fam120b|67544|family with sequence similarity 120, member B	AK161912|Fam120b|67544|family with sequence similarity 120, member B	AK051767|Fam120b|67544|family with sequence similarity 120, member B	DQ873694|Fam120b|67544|family with sequence similarity 120, member B	AK132211|Fam120b|67544|family with sequence similarity 120, member B	AK016568|Fam120b|67544|family with sequence similarity 120, member B	AK076185|Fam120b|67544|family with sequence similarity 120, member B
mm9_v1_chr3_+_28680223_28680237	2.81107	NHLH1,2.p2	AY205262|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205263|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205264|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205265|Eif5a2|208691|eukaryotic translation initiation factor 5A2	NM_177586|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AK036127|Eif5a2|208691|eukaryotic translation initiation factor 5A2
mm9_v1_chr11_+_3414884_3414917	2.7906	NHLH1,2.p2	AK079358|Selm|114679|selenoprotein M	AY043488|Selm|114679|selenoprotein M	AK046034|Selm|114679|selenoprotein M	AK035312|Selm|114679|selenoprotein M	AK086243|Selm|114679|selenoprotein M
mm9_v1_chr12_-_42212337_42212337	2.78916	NHLH1,2.p2	BC069041|Lrrn3|16981|leucine rich repeat protein 3, neuronal	NM_010733|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr4_+_42929523_42929598	2.78205	NHLH1,2.p2	AK122428|N28178|230085|expressed sequence N28178
mm9_v1_chr8_+_121868362_121868462	2.77402	NHLH1,2.p2	AK050550|Hsbp1|68196|heat shock factor binding protein 1	AK018708|Hsbp1|68196|heat shock factor binding protein 1	AK078498|Hsbp1|68196|heat shock factor binding protein 1	AK145940|Hsbp1|68196|heat shock factor binding protein 1	BC002153|Hsbp1|68196|heat shock factor binding protein 1	NM_024219|Hsbp1|68196|heat shock factor binding protein 1
mm9_v1_chrX_+_8469478_8469488	2.77314	NHLH1,2.p2	NM_175327|B630019K06Rik|102941|RIKEN cDNA B630019K06 gene
mm9_v1_chr15_-_73253534_73253557	2.77163	NHLH1,2.p2	BC030180|Ptk2|14083|PTK2 protein tyrosine kinase 2	AK079821|Ptk2|14083|PTK2 protein tyrosine kinase 2
mm9_v1_chr12_-_21291800_21292119	2.76962	NHLH1,2.p2	AK007635|Itgb1bp1|16413|integrin beta 1 binding protein 1	AK089937|Itgb1bp1|16413|integrin beta 1 binding protein 1	BC021151|Itgb1bp1|16413|integrin beta 1 binding protein 1	AK147929|Itgb1bp1|16413|integrin beta 1 binding protein 1	AK002786|Itgb1bp1|16413|integrin beta 1 binding protein 1	AK004172|Itgb1bp1|16413|integrin beta 1 binding protein 1	AJ001373|Itgb1bp1|16413|integrin beta 1 binding protein 1	AK075577|Itgb1bp1|16413|integrin beta 1 binding protein 1	NM_008403|Itgb1bp1|16413|integrin beta 1 binding protein 1
mm9_v1_chr6_-_125115580_125115612	2.76282	NHLH1,2.p2	BC093508|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC083149|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC091768|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC094037|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK191938|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK192040|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK199608|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK201736|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC085315|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC145810|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC145812|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	M32599|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC023196|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC092267|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC083065|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC095932|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC082592|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC092294|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	NM_008084|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC083079|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC085275|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC083080|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC085274|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC092252|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC020407|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC092264|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC096440|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC096590|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	BC110311|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase
mm9_v1_chr15_-_98593432_98593456	2.75865	NHLH1,2.p2	AK195626|Arf3|11842|ADP-ribosylation factor 3
mm9_v1_chr3_-_97672147_97672234	2.75514	NHLH1,2.p2	AK141917|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_177145|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr2_+_155207542_155207579	2.75161	NHLH1,2.p2	AK170132|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chrX_+_8469507_8469585	2.73977	NHLH1,2.p2	AK046767|B630019K06Rik|102941|RIKEN cDNA B630019K06 gene	BC055780|B630019K06Rik|102941|RIKEN cDNA B630019K06 gene
mm9_v1_chr13_+_118391270_118391304	2.73923	NHLH1,2.p2	AJ225123|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1
mm9_v1_chr11_+_30785357_30785392	2.73822	NHLH1,2.p2	AK141614|Gpr75|237716|G protein-coupled receptor 75
mm9_v1_chr11_-_100217392_100217401	2.73358	NHLH1,2.p2	BC034089|Hap1|15114|huntingtin-associated protein 1	AK138436|Hap1|15114|huntingtin-associated protein 1	AJ000262|Hap1|15114|huntingtin-associated protein 1	AJ002271|Hap1|15114|huntingtin-associated protein 1
mm9_v1_chr6_+_117961386_117961396	2.73284	NHLH1,2.p2	AK158756|Rasgef1a|70727|RasGEF domain family, member 1A
mm9_v1_chr6_-_8728481_8728486	2.7302	NHLH1,2.p2	AK005965|Ica1|15893|islet cell autoantigen 1	NM_010492|Ica1|15893|islet cell autoantigen 1	AK016989|Ica1|15893|islet cell autoantigen 1
mm9_v1_chr2_+_126378563_126378890	2.7282	NHLH1,2.p2	AK165446|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	NM_011978|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AK144069|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	BC013442|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	BC024735|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	BC022170|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AJ223958|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AK144070|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AF033031|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AF072757|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2
mm9_v1_chr12_+_17697604_17697620	2.719	NHLH1,2.p2	NM_016677|Hpcal1|53602|hippocalcin-like 1
mm9_v1_chr11_-_115948258_115948310	2.71603	NHLH1,2.p2	AK079300|Wbp2|22378|WW domain binding protein 2	AK151368|Wbp2|22378|WW domain binding protein 2	AK170317|Wbp2|22378|WW domain binding protein 2	NM_016852|Wbp2|22378|WW domain binding protein 2	U40826|Wbp2|22378|WW domain binding protein 2	AK004824|Wbp2|22378|WW domain binding protein 2	AK146572|Wbp2|22378|WW domain binding protein 2	AK170474|Wbp2|22378|WW domain binding protein 2	BC055058|Wbp2|22378|WW domain binding protein 2
mm9_v1_chr17_+_81343933_81344010	2.71489	NHLH1,2.p2	AK013110|Tmem178|68027|transmembrane protein 178	AK014196|Tmem178|68027|transmembrane protein 178	NM_026516|Tmem178|68027|transmembrane protein 178
mm9_v1_chr11_+_59319186_59319198	2.71198	NHLH1,2.p2	AK017115|4933439C10Rik|74476|RIKEN cDNA 4933439C10 gene	AK163429|4933439C10Rik|74476|RIKEN cDNA 4933439C10 gene
mm9_v1_chrX_-_149204003_149204188	2.70929	NHLH1,2.p2	DQ358971|Shroom2|110380|shroom family member 2	NM_172441|Shroom2|110380|shroom family member 2	EF071946|Shroom2|110380|shroom family member 2
mm9_v1_chr13_+_24937049_24937086	2.70737	NHLH1,2.p2	BC115723|D130043K22Rik|210108|RIKEN cDNA D130043K22 gene	BC115940|D130043K22Rik|210108|RIKEN cDNA D130043K22 gene
mm9_v1_chr19_+_60831889_60831889	2.70391	NHLH1,2.p2	BC085512|Nanos1|332397|nanos homolog 1 (Drosophila)	NM_178421|Nanos1|332397|nanos homolog 1 (Drosophila)
mm9_v1_chr15_-_75911326_75911375	2.70127	NHLH1,2.p2	AK151526|Puf60|67959|poly-U binding splicing factor 60	AK149632|Puf60|67959|poly-U binding splicing factor 60	AK075960|Puf60|67959|poly-U binding splicing factor 60	AK168789|Puf60|67959|poly-U binding splicing factor 60	AK146534|Puf60|67959|poly-U binding splicing factor 60	NM_028364|Puf60|67959|poly-U binding splicing factor 60	NM_133691|Puf60|67959|poly-U binding splicing factor 60
mm9_v1_chr11_+_100924916_100924968	2.69697	NHLH1,2.p2	
mm9_v1_chr2_-_119584234_119584260	2.69339	NHLH1,2.p2	X07984|Ltk|17005|leukocyte tyrosine kinase	X52621|Ltk|17005|leukocyte tyrosine kinase	BC055898|Ltk|17005|leukocyte tyrosine kinase	AK157478|Ltk|17005|leukocyte tyrosine kinase	BC047138|Ltk|17005|leukocyte tyrosine kinase	NM_008523|Ltk|17005|leukocyte tyrosine kinase	NM_206941|Ltk|17005|leukocyte tyrosine kinase
mm9_v1_chrX_+_34138224_34138276	2.69086	NHLH1,2.p2	AF042491|Pgrmc1|53328|progesterone receptor membrane component 1
mm9_v1_chr12_-_51750204_51750242	2.69055	NHLH1,2.p2	NM_008858|Prkd1|18760|protein kinase D1
mm9_v1_chrX_-_159081452_159081495	2.68794	NHLH1,2.p2	BC139012|Reps2|194590|RALBP1 associated Eps domain containing protein 2	BC145500|Reps2|194590|RALBP1 associated Eps domain containing protein 2
mm9_v1_chr16_-_28753298_28753313	2.68566	NHLH1,2.p2	AK018774|Fgf12|14167|fibroblast growth factor 12
mm9_v1_chr3_-_143868114_143868170	2.68556	NHLH1,2.p2	AK033097|Lmo4|16911|LIM domain only 4	AK159590|Lmo4|16911|LIM domain only 4
mm9_v1_chr5_-_8367951_8368174	2.68204	NHLH1,2.p2	BC117707|Adam22|11496|a disintegrin and metallopeptidase domain 22	BC117708|Adam22|11496|a disintegrin and metallopeptidase domain 22	HM004095|Adam22|11496|a disintegrin and metallopeptidase domain 22	AB009674|Adam22|11496|a disintegrin and metallopeptidase domain 22	AK082335|Adam22|11496|a disintegrin and metallopeptidase domain 22	NM_001007220|Adam22|11496|a disintegrin and metallopeptidase domain 22	NM_001007221|Adam22|11496|a disintegrin and metallopeptidase domain 22	NM_001098225|Adam22|11496|a disintegrin and metallopeptidase domain 22	AK042962|Adam22|11496|a disintegrin and metallopeptidase domain 22
mm9_v1_chr10_-_79600131_79600131	2.67843	NHLH1,2.p2	BC052075|Dos|100503659|downstream of Stk11	NM_001195268|Dos|100503659|downstream of Stk11
mm9_v1_chr8_-_41597015_41597116	2.67833	NHLH1,2.p2	AK132063|Cnot7|18983|CCR4-NOT transcription complex, subunit 7	BC006021|Cnot7|18983|CCR4-NOT transcription complex, subunit 7	AK137838|Cnot7|18983|CCR4-NOT transcription complex, subunit 7	AK147048|Cnot7|18983|CCR4-NOT transcription complex, subunit 7	AK166449|Cnot7|18983|CCR4-NOT transcription complex, subunit 7	AK007767|Cnot7|18983|CCR4-NOT transcription complex, subunit 7	AK009561|Cnot7|18983|CCR4-NOT transcription complex, subunit 7
mm9_v1_chr17_-_46624611_46624627	2.6768	NHLH1,2.p2	NM_001162864|Ttbk1|106763|tau tubulin kinase 1
mm9_v1_chr6_+_55402231_55402288	2.67595	NHLH1,2.p2	AK147609|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	D82935|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1
mm9_v1_chr7_-_17509228_17509415	2.67394	NHLH1,2.p2	AK169630|Calm3|12315|calmodulin 3	BC050926|Calm3|12315|calmodulin 3	M19380|Calm3|12315|calmodulin 3	AK165568|Calm3|12315|calmodulin 3	AK153179|Calm3|12315|calmodulin 3	AK152754|Calm3|12315|calmodulin 3	AK151610|Calm3|12315|calmodulin 3	NM_007590|Calm3|12315|calmodulin 3
mm9_v1_chr1_+_57434454_57434500	2.66595	NHLH1,2.p2	NM_028546|1700066M21Rik|73467|RIKEN cDNA 1700066M21 gene
mm9_v1_chr4_+_128561383_128561383	2.66415	NHLH1,2.p2	BC049095|Trim62|67525|tripartite motif-containing 62	NM_178110|Trim62|67525|tripartite motif-containing 62
mm9_v1_chr11_+_53380870_53380943	2.6597	NHLH1,2.p2	AK161223|Kif3a|16568|kinesin family member 3A	NM_008443|Kif3a|16568|kinesin family member 3A	D12645|Kif3a|16568|kinesin family member 3A	AK161920|Kif3a|16568|kinesin family member 3A	AK169425|Kif3a|16568|kinesin family member 3A	BC052707|Kif3a|16568|kinesin family member 3A	BC044720|Kif3a|16568|kinesin family member 3A	AK147078|Kif3a|16568|kinesin family member 3A	BC023936|Kif3a|16568|kinesin family member 3A
mm9_v1_chr2_+_121134843_121134847	2.64981	NHLH1,2.p2	AK018185|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr12_+_75098739_75098790	2.64633	NHLH1,2.p2	AK137129|Syt16|238266|synaptotagmin XVI	AK032606|Syt16|238266|synaptotagmin XVI	NM_172804|Syt16|238266|synaptotagmin XVI
mm9_v1_chr11_-_94335350_94335511	2.63773	NHLH1,2.p2	BC057399|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001112813|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001177888|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001177890|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_009783|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit
mm9_v1_chr3_-_33042050_33042124	2.634	NHLH1,2.p2	AK034497|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr2_-_80287349_80287399	2.63354	NHLH1,2.p2	U88568|Frzb|20378|frizzled-related protein	BC016884|Frzb|20378|frizzled-related protein
mm9_v1_chr17_+_24987445_24987498	2.63337	NHLH1,2.p2	AK147022|Hagh|14651|hydroxyacyl glutathione hydrolase	BC004749|Hagh|14651|hydroxyacyl glutathione hydrolase
mm9_v1_chr5_+_116295259_116295312	2.63183	NHLH1,2.p2	AK145037|Cit|12704|citron
mm9_v1_chr1_-_129574328_129574371	2.63128	NHLH1,2.p2	AK011522|Tmem163|72160|transmembrane protein 163	AK047006|Tmem163|72160|transmembrane protein 163	AK042650|Tmem163|72160|transmembrane protein 163
mm9_v1_chr17_-_25969869_25969905	2.6299	NHLH1,2.p2	AK166630|Stub1|56424|STIP1 homology and U-Box containing protein 1	AK158595|Stub1|56424|STIP1 homology and U-Box containing protein 1
mm9_v1_chr3_-_8666930_8666974	2.62713	NHLH1,2.p2	AB041590|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1
mm9_v1_chr11_-_118770873_118770885	2.62076	NHLH1,2.p2	AK079086|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	NM_001024931|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	NM_001039167|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	NM_001039168|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3
mm9_v1_chr12_+_3960002_3960129	2.61994	NHLH1,2.p2	M30489|Pomc|18976|pro-opiomelanocortin-alpha
mm9_v1_chr9_+_54434140_54434327	2.61613	NHLH1,2.p2	AK158646|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK159051|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK117103|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK152353|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK159666|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK160054|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK150618|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK164038|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168149|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK167822|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK151304|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK153459|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168049|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK010065|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK032787|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK047951|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168034|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK084523|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	BC049956|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	NM_029573|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK169152|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	BC034273|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha
mm9_v1_chr15_-_79604806_79604924	2.61316	NHLH1,2.p2	BC005426|Dnalc4|54152|dynein, axonemal, light chain 4	AK002657|Dnalc4|54152|dynein, axonemal, light chain 4	AB010031|Dnalc4|54152|dynein, axonemal, light chain 4	AK132061|Dnalc4|54152|dynein, axonemal, light chain 4	NM_017470|Dnalc4|54152|dynein, axonemal, light chain 4
mm9_v1_chrX_-_92361694_92361718	2.61243	NHLH1,2.p2	BC067031|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9
mm9_v1_chr17_+_43153490_43153503	2.60958	NHLH1,2.p2	AK043823|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21	NM_178589|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21
mm9_v1_chr6_-_125115619_125115626	2.60445	NHLH1,2.p2	AK160753|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK164415|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	GU214026|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK002273|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK081405|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK140794|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK146435|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK147738|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK147891|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK160399|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK168217|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase
mm9_v1_chr2_+_118502976_118503018	2.60398	NHLH1,2.p2	NM_001145854|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6	AK028788|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6	AK145601|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6
mm9_v1_chr9_-_95650735_95650795	2.60369	NHLH1,2.p2	BC137581|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	BC144726|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	NM_011643|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	U73625|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	U95167|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	U95168|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	U95169|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	AK038676|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1
mm9_v1_chr17_-_45823086_45823135	2.60307	NHLH1,2.p2	AK090200|Tmem63b|224807|transmembrane protein 63b
mm9_v1_chr11_+_101329615_101329668	2.60029	NHLH1,2.p2	BC107022|Rnd2|11858|Rho family GTPase 2	NM_009708|Rnd2|11858|Rho family GTPase 2	BC128475|Rnd2|11858|Rho family GTPase 2	BC127034|Rnd2|11858|Rho family GTPase 2	AF016482|Rnd2|11858|Rho family GTPase 2
mm9_v1_chr17_-_25974021_25974145	2.59912	NHLH1,2.p2	BC021549|Rhbdl1|214951|rhomboid, veinlet-like 1 (Drosophila)	NM_144816|Rhbdl1|214951|rhomboid, veinlet-like 1 (Drosophila)	AK140428|Rhbdl1|214951|rhomboid, veinlet-like 1 (Drosophila)
mm9_v1_chrX_-_22942176_22942193	2.59637	NHLH1,2.p2	AK004677|Klhl13|67455|kelch-like 13 (Drosophila)	NM_026167|Klhl13|67455|kelch-like 13 (Drosophila)	AK045102|Klhl13|67455|kelch-like 13 (Drosophila)	AK051752|Klhl13|67455|kelch-like 13 (Drosophila)
mm9_v1_chr12_+_114378688_114378782	2.59453	NHLH1,2.p2	AF469648|Crip2|68337|cysteine rich protein 2	BC002093|Crip2|68337|cysteine rich protein 2	AK002484|Crip2|68337|cysteine rich protein 2	BC002096|Crip2|68337|cysteine rich protein 2	BC007149|Crip2|68337|cysteine rich protein 2	CT010309|Crip2|68337|cysteine rich protein 2
mm9_v1_chr16_-_13903174_13903239	2.58999	NHLH1,2.p2	AK054329|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK170661|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	NM_001039533|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	NM_053181|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1
mm9_v1_chr2_-_102291924_102291996	2.5899	NHLH1,2.p2	AK051097|Fjx1|14221|four jointed box 1 (Drosophila)	BC051990|Fjx1|14221|four jointed box 1 (Drosophila)	NM_010218|Fjx1|14221|four jointed box 1 (Drosophila)
mm9_v1_chr5_+_18732863_18732863	2.5896	NHLH1,2.p2	NM_001170746|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chr15_+_83622380_83622428	2.58461	NHLH1,2.p2	BC057550|Mpped1|223726|metallophosphoesterase domain containing 1
mm9_v1_chr14_+_21537761_21537875	2.58257	NHLH1,2.p2	BC027155|2310021P13Rik|268721|RIKEN cDNA 2310021P13 gene
mm9_v1_chr14_-_70689267_70689330	2.57847	NHLH1,2.p2	AK133393|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform
mm9_v1_chr13_+_76522408_76522408	2.57713	NHLH1,2.p2	AK047562|Mctp1|78771|multiple C2 domains, transmembrane 1	NM_030174|Mctp1|78771|multiple C2 domains, transmembrane 1
mm9_v1_chr8_+_113557763_113557896	2.57486	NHLH1,2.p2	AK087291|Aars|234734|alanyl-tRNA synthetase	AK158139|Aars|234734|alanyl-tRNA synthetase	AK085725|Aars|234734|alanyl-tRNA synthetase	AY223875|Aars|234734|alanyl-tRNA synthetase	AK150227|Aars|234734|alanyl-tRNA synthetase	AK036738|Aars|234734|alanyl-tRNA synthetase	BC033273|Aars|234734|alanyl-tRNA synthetase	NM_146217|Aars|234734|alanyl-tRNA synthetase	AK183614|Aars|234734|alanyl-tRNA synthetase
mm9_v1_chr17_+_25032050_25032109	2.57395	NHLH1,2.p2	NM_023260|Mrps34|79044|mitochondrial ribosomal protein S34	AK002285|Mrps34|79044|mitochondrial ribosomal protein S34	AK019922|Mrps34|79044|mitochondrial ribosomal protein S34	AK007337|Mrps34|79044|mitochondrial ribosomal protein S34	AK004049|Mrps34|79044|mitochondrial ribosomal protein S34	BC024336|Mrps34|79044|mitochondrial ribosomal protein S34
mm9_v1_chr3_-_88897207_88897284	2.57185	NHLH1,2.p2	AK039664|Rusc1|72296|RUN and SH3 domain containing 1	BC056360|Rusc1|72296|RUN and SH3 domain containing 1	AK042689|Rusc1|72296|RUN and SH3 domain containing 1	NM_001083807|Rusc1|72296|RUN and SH3 domain containing 1	NM_028188|Rusc1|72296|RUN and SH3 domain containing 1
mm9_v1_chr17_-_24336901_24336901	2.56889	NHLH1,2.p2	AK049306|Tbc1d24|224617|TBC1 domain family, member 24	AK161054|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163852|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163853|Tbc1d24|224617|TBC1 domain family, member 24
mm9_v1_chr7_+_70589623_70589657	2.56847	NHLH1,2.p2	AJ430384|Otud7a|170711|OTU domain containing 7A	NM_130880|Otud7a|170711|OTU domain containing 7A
mm9_v1_chr2_-_155518064_155518121	2.56837	NHLH1,2.p2	AK154263|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK156047|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AF130458|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK165259|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK171404|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	BC057330|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK220239|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK076496|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	NM_001163452|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	NM_019828|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein
mm9_v1_chr2_-_80421054_80421454	2.56264	NHLH1,2.p2	AK195509|Nckap1|50884|NCK-associated protein 1	AK191629|Nckap1|50884|NCK-associated protein 1	AK194160|Nckap1|50884|NCK-associated protein 1	AK198467|Nckap1|50884|NCK-associated protein 1	AK204199|Nckap1|50884|NCK-associated protein 1	AK213144|Nckap1|50884|NCK-associated protein 1	BC127067|Nckap1|50884|NCK-associated protein 1	AJ534525|Nckap1|50884|NCK-associated protein 1	NM_016965|Nckap1|50884|NCK-associated protein 1	BC060197|Nckap1|50884|NCK-associated protein 1
mm9_v1_chrX_+_34138197_34138219	2.55718	NHLH1,2.p2	AK162315|Pgrmc1|53328|progesterone receptor membrane component 1	AK169063|Pgrmc1|53328|progesterone receptor membrane component 1	AK153272|Pgrmc1|53328|progesterone receptor membrane component 1	AK159101|Pgrmc1|53328|progesterone receptor membrane component 1	AK166240|Pgrmc1|53328|progesterone receptor membrane component 1	AK167655|Pgrmc1|53328|progesterone receptor membrane component 1	AK168882|Pgrmc1|53328|progesterone receptor membrane component 1	AK168387|Pgrmc1|53328|progesterone receptor membrane component 1	AK159345|Pgrmc1|53328|progesterone receptor membrane component 1	AK159599|Pgrmc1|53328|progesterone receptor membrane component 1	BC006016|Pgrmc1|53328|progesterone receptor membrane component 1	NM_016783|Pgrmc1|53328|progesterone receptor membrane component 1
mm9_v1_chr12_-_82434150_82434166	2.54809	NHLH1,2.p2	AK139260|Slc8a3|110893|solute carrier family 8 (sodium/calcium exchanger), member 3	AF453257|Slc8a3|110893|solute carrier family 8 (sodium/calcium exchanger), member 3	AK044636|Slc8a3|110893|solute carrier family 8 (sodium/calcium exchanger), member 3	NM_001167920|Slc8a3|110893|solute carrier family 8 (sodium/calcium exchanger), member 3	NM_080440|Slc8a3|110893|solute carrier family 8 (sodium/calcium exchanger), member 3
mm9_v1_chr7_+_114514258_114514338	2.54215	NHLH1,2.p2	AK089115|Syt9|60510|synaptotagmin IX	NM_021889|Syt9|60510|synaptotagmin IX	AK156631|Syt9|60510|synaptotagmin IX	BC132495|Syt9|60510|synaptotagmin IX	BC137904|Syt9|60510|synaptotagmin IX	BC145024|Syt9|60510|synaptotagmin IX
mm9_v1_chr9_-_83699706_83699913	2.54015	NHLH1,2.p2	AF277093|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	AK029065|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	BC037030|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	NM_001145974|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	AK030666|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	NM_148941|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4
mm9_v1_chrX_+_130829763_130829919	2.53316	NHLH1,2.p2	BC042623|Tmem35|67564|transmembrane protein 35	NM_026239|Tmem35|67564|transmembrane protein 35	BC050880|Tmem35|67564|transmembrane protein 35
mm9_v1_chr10_-_40021920_40021980	2.52145	NHLH1,2.p2	Z14986|Amd1|11702|S-adenosylmethionine decarboxylase 1	BC092072|Amd1|11702|S-adenosylmethionine decarboxylase 1	BC011110|Amd1|11702|S-adenosylmethionine decarboxylase 1	BC071220|Amd1|11702|S-adenosylmethionine decarboxylase 1
mm9_v1_chr5_+_118426802_118426818	2.51995	NHLH1,2.p2	AK048131|Fbxo21|231670|F-box protein 21	AK048542|Fbxo21|231670|F-box protein 21
mm9_v1_chr11_-_118770859_118770872	2.51847	NHLH1,2.p2	AK049926|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	AK160816|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	AK086669|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3
mm9_v1_chr8_-_13890244_13890296	2.51469	NHLH1,2.p2	BC029192|2410022L05Rik|66423|RIKEN cDNA 2410022L05 gene	AK010573|2410022L05Rik|66423|RIKEN cDNA 2410022L05 gene	AK008882|2410022L05Rik|66423|RIKEN cDNA 2410022L05 gene	NM_025556|2410022L05Rik|66423|RIKEN cDNA 2410022L05 gene
mm9_v1_chr9_+_20673178_20673179	2.50306	NHLH1,2.p2	AK034516|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene
mm9_v1_chr11_+_83223573_83223573	2.50108	NHLH1,2.p2	AK158941|Rasl10b|276952|RAS-like, family 10, member B	NM_001013386|Rasl10b|276952|RAS-like, family 10, member B
mm9_v1_chr14_+_8835385_8835479	2.50021	NHLH1,2.p2	NM_025341|Abhd6|66082|abhydrolase domain containing 6	AK090076|Abhd6|66082|abhydrolase domain containing 6	BC027011|Abhd6|66082|abhydrolase domain containing 6	AK168782|Abhd6|66082|abhydrolase domain containing 6	AK002883|Abhd6|66082|abhydrolase domain containing 6	AK011887|Abhd6|66082|abhydrolase domain containing 6	AK076105|Abhd6|66082|abhydrolase domain containing 6
mm9_v1_chr11_+_84771242_84771341	2.49625	NHLH1,2.p2	NM_007607|Car4|12351|carbonic anhydrase 4	AK154754|Car4|12351|carbonic anhydrase 4	AK165399|Car4|12351|carbonic anhydrase 4	BC012704|Car4|12351|carbonic anhydrase 4
mm9_v1_chr16_-_18343944_18344024	2.49467	NHLH1,2.p2	BC005445|D16H22S680E|27883|DNA segment, Chr 16, human D22S680E, expressed	AK089239|D16H22S680E|27883|DNA segment, Chr 16, human D22S680E, expressed	AK047383|D16H22S680E|27883|DNA segment, Chr 16, human D22S680E, expressed	AK133588|D16H22S680E|27883|DNA segment, Chr 16, human D22S680E, expressed	NM_138583|D16H22S680E|27883|DNA segment, Chr 16, human D22S680E, expressed
mm9_v1_chr4_+_151712739_151712761	2.49015	NHLH1,2.p2	NM_001081376|Chd5|269610|chromodomain helicase DNA binding protein 5	NM_029216|Chd5|269610|chromodomain helicase DNA binding protein 5	AK147563|Chd5|269610|chromodomain helicase DNA binding protein 5
mm9_v1_chr9_-_39411708_39411856	2.48805	NHLH1,2.p2	AK049098|AW551984|244810|expressed sequence AW551984	NM_178737|AW551984|244810|expressed sequence AW551984	BC061211|AW551984|244810|expressed sequence AW551984
mm9_v1_chr5_+_33361386_33361464	2.48663	NHLH1,2.p2	NM_011738|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm9_v1_chr7_+_106415956_106416023	2.48473	NHLH1,2.p2	BC053039|Mtap6|17760|microtubule-associated protein 6	NM_001048167|Mtap6|17760|microtubule-associated protein 6	NM_010837|Mtap6|17760|microtubule-associated protein 6	AK082709|Mtap6|17760|microtubule-associated protein 6	AK087413|Mtap6|17760|microtubule-associated protein 6
mm9_v1_chr7_-_31912022_31912061	2.48255	NHLH1,2.p2	BC039140|Scn1b|20266|sodium channel, voltage-gated, type I, beta
mm9_v1_chr13_-_105844882_105845009	2.48226	NHLH1,2.p2	AK137417|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK036240|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK032138|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	NM_029879|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein
mm9_v1_chr13_-_58009599_58009635	2.47778	NHLH1,2.p2	BC158020|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	BC075625|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
mm9_v1_chr14_+_63741286_63741338	2.4768	NHLH1,2.p2	AK083393|Ctsb|13030|cathepsin B	NM_007798|Ctsb|13030|cathepsin B	S69034|Ctsb|13030|cathepsin B	BC006656|Ctsb|13030|cathepsin B	AK159992|Ctsb|13030|cathepsin B	AK167361|Ctsb|13030|cathepsin B	AK170959|Ctsb|13030|cathepsin B
mm9_v1_chr2_-_165298664_165298723	2.47616	NHLH1,2.p2	AK157881|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	BC028882|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	BC026803|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	AF306491|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	AK165355|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	AK085326|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	AK087518|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	AK128982|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	AK138344|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	NM_054055|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	AK086775|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
mm9_v1_chr4_+_42963222_42963293	2.4731	NHLH1,2.p2	BC027782|Dnajb5|56323|DnaJ (Hsp40) homolog, subfamily B, member 5	AK158972|Dnajb5|56323|DnaJ (Hsp40) homolog, subfamily B, member 5	BC048902|Dnajb5|56323|DnaJ (Hsp40) homolog, subfamily B, member 5
mm9_v1_chr10_-_75322897_75322929	2.46907	NHLH1,2.p2	L07607|Mif|17319|macrophage migration inhibitory factor	Z23048|Mif|17319|macrophage migration inhibitory factor
mm9_v1_chr11_-_100217433_100217454	2.46825	NHLH1,2.p2	BC053043|Hap1|15114|huntingtin-associated protein 1	NM_010404|Hap1|15114|huntingtin-associated protein 1	NM_177981|Hap1|15114|huntingtin-associated protein 1
mm9_v1_chr6_+_77193078_77193105	2.45841	NHLH1,2.p2	AK053364|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1
mm9_v1_chr9_+_121206613_121206652	2.4543	NHLH1,2.p2	AK029123|Trak1|67095|trafficking protein, kinesin binding 1	AK052264|Trak1|67095|trafficking protein, kinesin binding 1	AK041436|Trak1|67095|trafficking protein, kinesin binding 1
mm9_v1_chr18_-_33623668_33623692	2.45192	NHLH1,2.p2	NM_001109988|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr17_-_29374656_29374735	2.44592	NHLH1,2.p2	AK147529|Cpne5|240058|copine V	AK044042|Cpne5|240058|copine V	NM_153166|Cpne5|240058|copine V	BC036971|Cpne5|240058|copine V
mm9_v1_chr16_-_22657283_22657317	2.44337	NHLH1,2.p2	AK083258|Dgkg|110197|diacylglycerol kinase, gamma	NM_138650|Dgkg|110197|diacylglycerol kinase, gamma
mm9_v1_chr3_-_8667013_8667038	2.44186	NHLH1,2.p2	AF232241|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1	AF172286|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1	BC086635|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1	AK140212|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1	NM_010423|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1	AK011149|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1
mm9_v1_chr11_+_100870814_100870858	2.43856	NHLH1,2.p2	AK159114|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK172078|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK040343|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1
mm9_v1_chr4_+_104829951_104829954	2.43838	NHLH1,2.p2	AK011276|Ppap2b|67916|phosphatidic acid phosphatase type 2B	NM_080555|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr1_-_39707919_39708026	2.43153	NHLH1,2.p2	BC116790|Creg2|263764|cellular repressor of E1A-stimulated genes 2	BC116792|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK044192|Creg2|263764|cellular repressor of E1A-stimulated genes 2	NM_170597|Creg2|263764|cellular repressor of E1A-stimulated genes 2
mm9_v1_chr17_-_25707599_25707638	2.43027	NHLH1,2.p2	BC043704|Sox8|20681|SRY-box containing gene 8	BC085619|Sox8|20681|SRY-box containing gene 8	AK032459|Sox8|20681|SRY-box containing gene 8	AK033460|Sox8|20681|SRY-box containing gene 8	AK034231|Sox8|20681|SRY-box containing gene 8	AK046473|Sox8|20681|SRY-box containing gene 8	AK053716|Sox8|20681|SRY-box containing gene 8	AK145294|Sox8|20681|SRY-box containing gene 8	NM_011447|Sox8|20681|SRY-box containing gene 8
mm9_v1_chr8_-_67171805_67171871	2.42673	NHLH1,2.p2	AK047891|Cpe|12876|carboxypeptidase E	BC010197|Cpe|12876|carboxypeptidase E	NM_013494|Cpe|12876|carboxypeptidase E	AK160097|Cpe|12876|carboxypeptidase E
mm9_v1_chr11_+_112643501_112643595	2.42571	NHLH1,2.p2	NM_011448|Sox9|20682|SRY-box containing gene 9	AK049986|Sox9|20682|SRY-box containing gene 9	AK030187|Sox9|20682|SRY-box containing gene 9	AK031516|Sox9|20682|SRY-box containing gene 9	BC023796|Sox9|20682|SRY-box containing gene 9	BC023808|Sox9|20682|SRY-box containing gene 9	BC024958|Sox9|20682|SRY-box containing gene 9	BC023953|Sox9|20682|SRY-box containing gene 9	AK220197|Sox9|20682|SRY-box containing gene 9	BC034264|Sox9|20682|SRY-box containing gene 9
mm9_v1_chr18_+_37303622_37303622	2.42358	NHLH1,2.p2	AY013769|Pcdhac2|353237|protocadherin alpha subfamily C, 2	NM_001003672|Pcdhac2|353237|protocadherin alpha subfamily C, 2
mm9_v1_chr9_+_43875103_43875168	2.4231	NHLH1,2.p2	NM_198092|Usp2|53376|ubiquitin specific peptidase 2	AK138799|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr6_+_77192839_77192971	2.41945	NHLH1,2.p2	BC027803|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1
mm9_v1_chr3_+_68673489_68673528	2.41861	NHLH1,2.p2	NM_001167996|1110032F04Rik|68725|RIKEN cDNA 1110032F04 gene
mm9_v1_chr11_-_103815361_103815405	2.41792	NHLH1,2.p2	BC006627|Nsf|18195|N-ethylmaleimide sensitive fusion protein	NM_008740|Nsf|18195|N-ethylmaleimide sensitive fusion protein
mm9_v1_chr13_+_104899869_104899979	2.4151	NHLH1,2.p2	BC017611|Sgtb|218544|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	NM_144838|Sgtb|218544|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	AK082080|Sgtb|218544|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
mm9_v1_chr3_-_36589048_36589088	2.414	NHLH1,2.p2	AK082063|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	AK080619|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	AK032317|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	NM_019510|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3
mm9_v1_chr12_+_17697623_17697667	2.41255	NHLH1,2.p2	AF085192|Hpcal1|53602|hippocalcin-like 1	AK002849|Hpcal1|53602|hippocalcin-like 1	BC001997|Hpcal1|53602|hippocalcin-like 1
mm9_v1_chr9_-_41932195_41932209	2.4117	NHLH1,2.p2	AB015790|Sorl1|20660|sortilin-related receptor, LDLR class A repeats-containing
mm9_v1_chr1_+_176431933_176432011	2.40991	NHLH1,2.p2	BC094606|Fmn2|54418|formin 2	NM_019445|Fmn2|54418|formin 2	AF218940|Fmn2|54418|formin 2
mm9_v1_chr16_+_7069971_7070091	2.4082	NHLH1,2.p2	AY659956|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	AY659957|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	AY659958|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr11_+_71564204_71564204	2.40144	NHLH1,2.p2	BC063070|Wscd1|216881|WSC domain containing 1	NM_177618|Wscd1|216881|WSC domain containing 1
mm9_v1_chr12_+_81744869_81744959	2.3948	NHLH1,2.p2	BC058649|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9
mm9_v1_chr2_+_124436031_124436031	2.39156	NHLH1,2.p2	AB091532|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_172537|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199238|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199239|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199240|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199241|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr1_+_75542840_75542910	2.38516	NHLH1,2.p2	NM_009208|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3	BC080271|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3	M28383|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3
mm9_v1_chr14_-_119498586_119498663	2.37637	NHLH1,2.p2	AK038817|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2	AK052077|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2	NM_001081252|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2	AK048685|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2
mm9_v1_chr9_-_45714921_45714956	2.37104	NHLH1,2.p2	AK028768|Rnf214|235315|ring finger protein 214	AK046190|Rnf214|235315|ring finger protein 214	BC049909|Rnf214|235315|ring finger protein 214
mm9_v1_chr4_+_48598013_48598089	2.37018	NHLH1,2.p2	BC057598|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1	NM_021436|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1
mm9_v1_chr12_+_114378368_114378447	2.36597	NHLH1,2.p2	NM_024223|Crip2|68337|cysteine rich protein 2
mm9_v1_chr8_-_114267646_114267779	2.36407	NHLH1,2.p2	U48853|Bcar1|12927|breast cancer anti-estrogen resistance 1	BC057578|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK167717|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK090315|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK145863|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK167516|Bcar1|12927|breast cancer anti-estrogen resistance 1	NM_009954|Bcar1|12927|breast cancer anti-estrogen resistance 1
mm9_v1_chr13_+_25035416_25035485	2.36371	NHLH1,2.p2	AY081194|Gpld1|14756|glycosylphosphatidylinositol specific phospholipase D1	AK004957|Gpld1|14756|glycosylphosphatidylinositol specific phospholipase D1	BC019146|Gpld1|14756|glycosylphosphatidylinositol specific phospholipase D1	AY333960|Gpld1|14756|glycosylphosphatidylinositol specific phospholipase D1
mm9_v1_chr16_+_13903253_13903280	2.35903	NHLH1,2.p2	AK136449|Mpv17l|93734|Mpv17 transgene, kidney disease mutant-like
mm9_v1_chr19_+_20676453_20676504	2.35741	NHLH1,2.p2	M74570|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	BC044729|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	BC054386|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	NM_013467|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	BC035322|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	S75713|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1
mm9_v1_chr15_-_75921924_75921982	2.35557	NHLH1,2.p2	BC068117|Nrbp2|223649|nuclear receptor binding protein 2
mm9_v1_chr3_-_8666985_8667012	2.34602	NHLH1,2.p2	AF151521|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1	AJ243895|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1	AF176423|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1
mm9_v1_chr2_-_155517936_155518062	2.34268	NHLH1,2.p2	AK216771|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AF509881|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	BC033274|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK170085|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein
mm9_v1_chr8_-_124175827_124175832	2.34096	NHLH1,2.p2	BC132449|Zcchc14|142682|zinc finger, CCHC domain containing 14	BC137853|Zcchc14|142682|zinc finger, CCHC domain containing 14	AB030244|Zcchc14|142682|zinc finger, CCHC domain containing 14	NM_080855|Zcchc14|142682|zinc finger, CCHC domain containing 14
mm9_v1_chr3_+_146067763_146067821	2.33915	NHLH1,2.p2	AK077112|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein
mm9_v1_chr2_-_118199046_118199154	2.33895	NHLH1,2.p2	BC052037|Gpr176|381413|G protein-coupled receptor 176	NM_201367|Gpr176|381413|G protein-coupled receptor 176
mm9_v1_chr9_-_110310638_110310737	2.33882	NHLH1,2.p2	NM_001081043|Ptpn23|104831|protein tyrosine phosphatase, non-receptor type 23
mm9_v1_chr3_-_119486305_119486325	2.33754	NHLH1,2.p2	AK135738|Ptbp2|56195|polypyrimidine tract binding protein 2	NM_019550|Ptbp2|56195|polypyrimidine tract binding protein 2
mm9_v1_chr2_-_12933305_12933373	2.3335	NHLH1,2.p2	AB044560|C1ql3|227580|C1q-like 3
mm9_v1_chr12_-_66174913_66174972	2.33221	NHLH1,2.p2	AF110812|Fkbp3|30795|FK506 binding protein 3	AK012346|Fkbp3|30795|FK506 binding protein 3	NM_013902|Fkbp3|30795|FK506 binding protein 3	AF135595|Fkbp3|30795|FK506 binding protein 3	AK168641|Fkbp3|30795|FK506 binding protein 3	BC002122|Fkbp3|30795|FK506 binding protein 3	AK145648|Fkbp3|30795|FK506 binding protein 3	AK150802|Fkbp3|30795|FK506 binding protein 3
mm9_v1_chr16_-_31314534_31314685	2.33093	NHLH1,2.p2	X82648|Apod|11815|apolipoprotein D	AK158118|Apod|11815|apolipoprotein D	AK157925|Apod|11815|apolipoprotein D	AK135046|Apod|11815|apolipoprotein D	AK157917|Apod|11815|apolipoprotein D	AK160729|Apod|11815|apolipoprotein D	AK162392|Apod|11815|apolipoprotein D	NM_007470|Apod|11815|apolipoprotein D	AK158405|Apod|11815|apolipoprotein D
mm9_v1_chr9_-_52487410_52487541	2.32996	NHLH1,2.p2	BC109328|AI593442|330941|expressed sequence AI593442	NM_178906|AI593442|330941|expressed sequence AI593442	AK033979|AI593442|330941|expressed sequence AI593442
mm9_v1_chr1_+_91476810_91476856	2.32591	NHLH1,2.p2	AK147521|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm9_v1_chr9_-_41932371_41932387	2.32051	NHLH1,2.p2	AK147303|Sorl1|20660|sortilin-related receptor, LDLR class A repeats-containing	NM_011436|Sorl1|20660|sortilin-related receptor, LDLR class A repeats-containing
mm9_v1_chr11_-_103815291_103815312	2.31693	NHLH1,2.p2	BC019167|Nsf|18195|N-ethylmaleimide sensitive fusion protein
mm9_v1_chr1_+_74379182_74379257	2.31658	NHLH1,2.p2	AB041609|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	NM_019999|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK086034|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK158483|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK041238|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia
mm9_v1_chr6_-_13788580_13788612	2.3158	NHLH1,2.p2	AK047740|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr6_+_104443037_104443047	2.31448	NHLH1,2.p2	BC076594|Cntn6|53870|contactin 6	NM_017383|Cntn6|53870|contactin 6
mm9_v1_chr19_-_5085487_5085548	2.30591	NHLH1,2.p2	AK144531|Tmem151a|381199|transmembrane protein 151A	AK155690|Tmem151a|381199|transmembrane protein 151A	AK163651|Tmem151a|381199|transmembrane protein 151A	AK139456|Tmem151a|381199|transmembrane protein 151A
mm9_v1_chr11_+_100870759_100870810	2.30577	NHLH1,2.p2	NM_016920|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK029316|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AF218249|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK036530|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK158786|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC066839|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC071182|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC001995|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1
mm9_v1_chr5_+_37633353_37633487	2.29565	NHLH1,2.p2	AK158793|Crmp1|12933|collapsin response mediator protein 1	AK159049|Crmp1|12933|collapsin response mediator protein 1
mm9_v1_chr11_+_49944855_49944942	2.29537	NHLH1,2.p2	NM_029745|Tbc1d9b|76795|TBC1 domain family, member 9B	BC062928|Tbc1d9b|76795|TBC1 domain family, member 9B	AK166472|Tbc1d9b|76795|TBC1 domain family, member 9B	BC065080|Tbc1d9b|76795|TBC1 domain family, member 9B	AK035457|Tbc1d9b|76795|TBC1 domain family, member 9B	AK147964|Tbc1d9b|76795|TBC1 domain family, member 9B	AK049999|Tbc1d9b|76795|TBC1 domain family, member 9B	BC065130|Tbc1d9b|76795|TBC1 domain family, member 9B	AK172999|Tbc1d9b|76795|TBC1 domain family, member 9B
mm9_v1_chrX_+_69208336_69208359	2.29433	NHLH1,2.p2	BC060135|Prrg3|208748|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)	NM_001081135|Prrg3|208748|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
mm9_v1_chr3_-_127540408_127540409	2.29315	NHLH1,2.p2	NM_145964|Ap1ar|211556|adaptor-related protein complex 1 associated regulatory protein
mm9_v1_chr6_-_23789048_23789235	2.28606	NHLH1,2.p2	AF000969|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	BC047394|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AY072800|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AK038568|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AB291947|Cadps2|320405|Ca2+-dependent activator protein for secretion 2
mm9_v1_chr17_+_24987429_24987437	2.2725	NHLH1,2.p2	NM_024284|Hagh|14651|hydroxyacyl glutathione hydrolase
mm9_v1_chr11_-_116060026_116060114	2.27227	NHLH1,2.p2	BC054727|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	AK051539|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	AB034914|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	AK040566|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	AK128941|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	AF006688|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl
mm9_v1_chr15_+_91503687_91503711	2.2711	NHLH1,2.p2	AY792512|Lrrk2|66725|leucine-rich repeat kinase 2
mm9_v1_chr16_+_38089607_38089652	2.26742	NHLH1,2.p2	AK154293|Gsk3b|56637|glycogen synthase kinase 3 beta	AK170965|Gsk3b|56637|glycogen synthase kinase 3 beta
mm9_v1_chr10_+_99478457_99478639	2.26431	NHLH1,2.p2	AK018777|Kitl|17311|kit ligand	NM_013598|Kitl|17311|kit ligand	U44725|Kitl|17311|kit ligand	AK134301|Kitl|17311|kit ligand	AK041961|Kitl|17311|kit ligand	AK165233|Kitl|17311|kit ligand	BC011322|Kitl|17311|kit ligand	M57647|Kitl|17311|kit ligand	S40364|Kitl|17311|kit ligand	S40534|Kitl|17311|kit ligand	S40536|Kitl|17311|kit ligand	M64262|Kitl|17311|kit ligand	X95379|Kitl|17311|kit ligand	X95380|Kitl|17311|kit ligand	X95381|Kitl|17311|kit ligand	X99322|Kitl|17311|kit ligand	Y10287|Kitl|17311|kit ligand	M59915|Kitl|17311|kit ligand
mm9_v1_chr19_+_10463540_10463619	2.26411	NHLH1,2.p2	NM_018801|Syt7|54525|synaptotagmin VII	NM_173067|Syt7|54525|synaptotagmin VII	NM_173068|Syt7|54525|synaptotagmin VII	AK080850|Syt7|54525|synaptotagmin VII
mm9_v1_chr7_+_112574425_112574538	2.26261	NHLH1,2.p2	AK053307|Cckbr|12426|cholecystokinin B receptor	AF019371|Cckbr|12426|cholecystokinin B receptor
mm9_v1_chr7_-_54387915_54388047	2.26014	NHLH1,2.p2	NM_001163565|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5	BC079592|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5
mm9_v1_chr2_+_106533281_106533425	2.25774	NHLH1,2.p2	AK165186|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr13_+_22135065_22135098	2.25665	NHLH1,2.p2	NM_178198|Hist1h2bj|319183|histone cluster 1, H2bj
mm9_v1_chr1_-_95531961_95532109	2.25494	NHLH1,2.p2	AF004934|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr17_+_35068258_35068328	2.25105	NHLH1,2.p2	AK077444|Neu1|18010|neuraminidase 1	AK145680|Neu1|18010|neuraminidase 1	Y11412|Neu1|18010|neuraminidase 1	U93702|Neu1|18010|neuraminidase 1	BC004666|Neu1|18010|neuraminidase 1
mm9_v1_chr5_-_122822329_122822391	2.251	NHLH1,2.p2	BC019498|1500011H22Rik|68948|RIKEN cDNA 1500011H22 gene	AK005211|1500011H22Rik|68948|RIKEN cDNA 1500011H22 gene	AK150218|1500011H22Rik|68948|RIKEN cDNA 1500011H22 gene
mm9_v1_chr18_-_16966954_16967033	2.2439	NHLH1,2.p2	AK087418|Cdh2|12558|cadherin 2	BC022107|Cdh2|12558|cadherin 2	AK032826|Cdh2|12558|cadherin 2
mm9_v1_chr3_+_28680248_28680315	2.24265	NHLH1,2.p2	AK052412|Eif5a2|208691|eukaryotic translation initiation factor 5A2	BC106843|Eif5a2|208691|eukaryotic translation initiation factor 5A2	BC106844|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AK082214|Eif5a2|208691|eukaryotic translation initiation factor 5A2
mm9_v1_chr6_-_113293879_113293979	2.24078	NHLH1,2.p2	AK089742|Camk1|52163|calcium/calmodulin-dependent protein kinase I	AK170188|Camk1|52163|calcium/calmodulin-dependent protein kinase I	BC014825|Camk1|52163|calcium/calmodulin-dependent protein kinase I	NM_133926|Camk1|52163|calcium/calmodulin-dependent protein kinase I	AK134936|Camk1|52163|calcium/calmodulin-dependent protein kinase I
mm9_v1_chr7_+_69521858_69521905	2.24001	NHLH1,2.p2	NM_013779|Magel2|27385|melanoma antigen, family L, 2	BC062913|Magel2|27385|melanoma antigen, family L, 2	AK086725|Magel2|27385|melanoma antigen, family L, 2	AK082944|Magel2|27385|melanoma antigen, family L, 2
mm9_v1_chr7_-_28327749_28327874	2.23973	NHLH1,2.p2	AK153508|Pld3|18807|phospholipase D family, member 3
mm9_v1_chr8_+_47556503_47556548	2.23894	NHLH1,2.p2	AK149406|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK152772|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK168078|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK004897|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	BC056644|Acsl1|14081|acyl-CoA synthetase long-chain family member 1
mm9_v1_chr5_+_117827904_117828056	2.23692	NHLH1,2.p2	AK195234|Wsb2|59043|WD repeat and SOCS box-containing 2	AK198504|Wsb2|59043|WD repeat and SOCS box-containing 2	AK206996|Wsb2|59043|WD repeat and SOCS box-containing 2	AK210681|Wsb2|59043|WD repeat and SOCS box-containing 2
mm9_v1_chr15_-_77136972_77136997	2.23561	NHLH1,2.p2	AY904025|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr14_-_7859962_7859962	2.23006	NHLH1,2.p2	NM_001164727|Gm10406|100038847|predicted gene 10406
mm9_v1_chr15_+_78258993_78259251	2.22967	NHLH1,2.p2	BC144818|Kctd17|72844|potassium channel tetramerisation domain containing 17	BC144820|Kctd17|72844|potassium channel tetramerisation domain containing 17	BC145799|Kctd17|72844|potassium channel tetramerisation domain containing 17	NM_001081367|Kctd17|72844|potassium channel tetramerisation domain containing 17
mm9_v1_chr14_-_123312303_123312411	2.22965	NHLH1,2.p2	BC080839|A2ld1|223267|AIG2-like domain 1	BC006662|A2ld1|223267|AIG2-like domain 1	AK050251|A2ld1|223267|AIG2-like domain 1	NM_145466|A2ld1|223267|AIG2-like domain 1
mm9_v1_chr15_-_25343483_25343542	2.22808	NHLH1,2.p2	AK159486|Basp1|70350|brain abundant, membrane attached signal protein 1	AK011545|Basp1|70350|brain abundant, membrane attached signal protein 1	AK046868|Basp1|70350|brain abundant, membrane attached signal protein 1	NM_027395|Basp1|70350|brain abundant, membrane attached signal protein 1
mm9_v1_chr7_+_107756292_107756368	2.22653	NHLH1,2.p2	AK084131|Rab6|19346|RAB6, member RAS oncogene family	AK160866|Rab6|19346|RAB6, member RAS oncogene family	AB041575|Rab6|19346|RAB6, member RAS oncogene family
mm9_v1_chr5_-_136410216_136410278	2.22561	NHLH1,2.p2	AK183704|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	CT010208|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr2_+_181255274_181255384	2.22176	NHLH1,2.p2	BC012268|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5
mm9_v1_chr4_-_116136779_116136820	2.21963	NHLH1,2.p2	NM_001042743|Mast2|17776|microtubule associated serine/threonine kinase 2	NM_008641|Mast2|17776|microtubule associated serine/threonine kinase 2
mm9_v1_chr5_-_45841382_45841479	2.21904	NHLH1,2.p2	AK011351|Qdpr|110391|quinoid dihydropteridine reductase	BC002107|Qdpr|110391|quinoid dihydropteridine reductase	AK159107|Qdpr|110391|quinoid dihydropteridine reductase	AK078123|Qdpr|110391|quinoid dihydropteridine reductase	AK166694|Qdpr|110391|quinoid dihydropteridine reductase	NM_024236|Qdpr|110391|quinoid dihydropteridine reductase
mm9_v1_chr17_+_43153516_43153557	2.21719	NHLH1,2.p2	AK143175|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21	AK033529|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21	AK134704|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21	BC016420|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21
mm9_v1_chr18_+_38456315_38456361	2.21234	NHLH1,2.p2	AK009783|Rnf14|56736|ring finger protein 14	AK010162|Rnf14|56736|ring finger protein 14	BC094250|Rnf14|56736|ring finger protein 14	AF249667|Rnf14|56736|ring finger protein 14	AK038986|Rnf14|56736|ring finger protein 14	BC054841|Rnf14|56736|ring finger protein 14
mm9_v1_chr5_+_33361479_33361562	2.20969	NHLH1,2.p2	AK149224|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	AK083936|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	D87661|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	BC061497|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	AF077002|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm9_v1_chr2_+_163820857_163820914	2.20217	NHLH1,2.p2	AK144061|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK002632|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr1_+_75503651_75503799	2.2009	NHLH1,2.p2	BC056627|Inha|16322|inhibin alpha	NM_010564|Inha|16322|inhibin alpha	X69618|Inha|16322|inhibin alpha
mm9_v1_chr9_+_111214242_111214242	2.19985	NHLH1,2.p2	AK079552|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1	NM_001164659|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1
mm9_v1_chr9_-_105397342_105397452	2.1979	NHLH1,2.p2	AK032255|Atp2c1|235574|ATPase, Ca++-sequestering	AK028393|Atp2c1|235574|ATPase, Ca++-sequestering	BC043706|Atp2c1|235574|ATPase, Ca++-sequestering	AK159918|Atp2c1|235574|ATPase, Ca++-sequestering	AK163049|Atp2c1|235574|ATPase, Ca++-sequestering	BC043091|Atp2c1|235574|ATPase, Ca++-sequestering	AK052958|Atp2c1|235574|ATPase, Ca++-sequestering	NM_175025|Atp2c1|235574|ATPase, Ca++-sequestering
mm9_v1_chr12_+_27154180_27154275	2.19704	NHLH1,2.p2	BC027329|Cmpk2|22169|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	AK004595|Cmpk2|22169|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	AK153469|Cmpk2|22169|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	AK153429|Cmpk2|22169|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	AK150543|Cmpk2|22169|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	AK150885|Cmpk2|22169|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	AK150725|Cmpk2|22169|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	AK150512|Cmpk2|22169|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	BC057565|Cmpk2|22169|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial
mm9_v1_chr7_-_148513566_148513623	2.1958	NHLH1,2.p2	AK155836|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)	NM_016874|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)
mm9_v1_chr7_+_107756205_107756288	2.19382	NHLH1,2.p2	AK160134|Rab6|19346|RAB6, member RAS oncogene family	AK051246|Rab6|19346|RAB6, member RAS oncogene family	AK083262|Rab6|19346|RAB6, member RAS oncogene family
mm9_v1_chr3_-_94386590_94386623	2.18909	NHLH1,2.p2	AK147452|Snx27|76742|sorting nexin family member 27	NM_001082484|Snx27|76742|sorting nexin family member 27	NM_029721|Snx27|76742|sorting nexin family member 27
mm9_v1_chr19_-_10175990_10176185	2.18891	NHLH1,2.p2	AF126798|Fads2|56473|fatty acid desaturase 2	NM_019699|Fads2|56473|fatty acid desaturase 2	AK143524|Fads2|56473|fatty acid desaturase 2	AK032633|Fads2|56473|fatty acid desaturase 2	AK083282|Fads2|56473|fatty acid desaturase 2	AK031337|Fads2|56473|fatty acid desaturase 2
mm9_v1_chr4_-_151851574_151851597	2.18763	NHLH1,2.p2	BC039178|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	NM_010598|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	U31908|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm9_v1_chrX_-_96665980_96666083	2.18651	NHLH1,2.p2	AK005373|Pja1|18744|praja1, RING-H2 motif containing	BC037616|Pja1|18744|praja1, RING-H2 motif containing	AK181060|Pja1|18744|praja1, RING-H2 motif containing	AK181628|Pja1|18744|praja1, RING-H2 motif containing	AK188149|Pja1|18744|praja1, RING-H2 motif containing	BC025975|Pja1|18744|praja1, RING-H2 motif containing	AK145943|Pja1|18744|praja1, RING-H2 motif containing	AF335250|Pja1|18744|praja1, RING-H2 motif containing	AF335251|Pja1|18744|praja1, RING-H2 motif containing	AF335252|Pja1|18744|praja1, RING-H2 motif containing	AK135382|Pja1|18744|praja1, RING-H2 motif containing	NM_001083110|Pja1|18744|praja1, RING-H2 motif containing	NM_008853|Pja1|18744|praja1, RING-H2 motif containing
mm9_v1_chr8_+_88016492_88016583	2.18506	NHLH1,2.p2	AK075894|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2	AK076250|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2	AK031958|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2	AK033424|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2	NM_173866|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2
mm9_v1_chr17_+_79451501_79451601	2.18095	NHLH1,2.p2	BC151027|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	BC151029|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	BC020023|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	AK148394|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	AK017598|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	AK037197|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)
mm9_v1_chr9_+_51573434_51573478	2.17539	NHLH1,2.p2	AK082060|Arhgap20|244867|Rho GTPase activating protein 20	AK046916|Arhgap20|244867|Rho GTPase activating protein 20	AK040756|Arhgap20|244867|Rho GTPase activating protein 20	NM_175535|Arhgap20|244867|Rho GTPase activating protein 20	AK035563|Arhgap20|244867|Rho GTPase activating protein 20
mm9_v1_chr12_-_5382487_5382487	2.17407	NHLH1,2.p2	BC065168|Klhl29|208439|kelch-like 29 (Drosophila)	NM_001164493|Klhl29|208439|kelch-like 29 (Drosophila)
mm9_v1_chr6_+_114081227_114081234	2.17304	NHLH1,2.p2	AK140423|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11	AK053078|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11	NM_172890|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11
mm9_v1_chr18_+_38476622_38476661	2.1679	NHLH1,2.p2	
mm9_v1_chr17_+_24987499_24987611	2.1669	NHLH1,2.p2	AK150557|Hagh|14651|hydroxyacyl glutathione hydrolase	AK151231|Hagh|14651|hydroxyacyl glutathione hydrolase	AK152742|Hagh|14651|hydroxyacyl glutathione hydrolase	AK165777|Hagh|14651|hydroxyacyl glutathione hydrolase	BC019817|Hagh|14651|hydroxyacyl glutathione hydrolase	NM_001159626|Hagh|14651|hydroxyacyl glutathione hydrolase
mm9_v1_chr2_-_80287781_80287882	2.16655	NHLH1,2.p2	U91905|Frzb|20378|frizzled-related protein
mm9_v1_chr11_+_77851417_77851587	2.16648	NHLH1,2.p2	AK170557|Flot2|14252|flotillin 2	NM_001040403|Flot2|14252|flotillin 2	NM_008028|Flot2|14252|flotillin 2	AK030199|Flot2|14252|flotillin 2	BC070423|Flot2|14252|flotillin 2	AK004589|Flot2|14252|flotillin 2	AK149530|Flot2|14252|flotillin 2	AK187814|Flot2|14252|flotillin 2	AK213895|Flot2|14252|flotillin 2
mm9_v1_chr11_-_116060358_116060358	2.16212	NHLH1,2.p2	BC056448|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	NM_015729|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl
mm9_v1_chr2_+_158492468_158492468	2.16162	NHLH1,2.p2	NM_153089|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm9_v1_chr16_-_32868355_32868453	2.16057	NHLH1,2.p2	BC057307|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK042428|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK170223|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK122221|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK030368|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	BC060601|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	NM_172615|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK170002|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK171583|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	BC067390|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene
mm9_v1_chr2_+_25733392_25733397	2.15364	NHLH1,2.p2	AK033953|Kcnt1|227632|potassium channel, subfamily T, member 1
mm9_v1_chr19_+_47253484_47253552	2.15112	NHLH1,2.p2	BC058386|Neurl1a|18011|neuralized homolog 1A (Drosophila)	AK046382|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr5_+_114185777_114185845	2.14916	NHLH1,2.p2	NM_001010825|Ficd|231630|FIC domain containing	AK087477|Ficd|231630|FIC domain containing	BC106090|Ficd|231630|FIC domain containing
mm9_v1_chrX_+_149932693_149932774	2.1488	NHLH1,2.p2	AK076159|Ubqln2|54609|ubiquilin 2	AF177346|Ubqln2|54609|ubiquilin 2	BC053022|Ubqln2|54609|ubiquilin 2	NM_018798|Ubqln2|54609|ubiquilin 2
mm9_v1_chr15_+_80004048_80004240	2.14623	NHLH1,2.p2	AK081850|Mgat3|17309|mannoside acetylglucosaminyltransferase 3	NM_010795|Mgat3|17309|mannoside acetylglucosaminyltransferase 3	BC053040|Mgat3|17309|mannoside acetylglucosaminyltransferase 3
mm9_v1_chr16_-_22657245_22657273	2.14556	NHLH1,2.p2	AK220294|Dgkg|110197|diacylglycerol kinase, gamma	AK087972|Dgkg|110197|diacylglycerol kinase, gamma	AK085470|Dgkg|110197|diacylglycerol kinase, gamma
mm9_v1_chr4_-_151851624_151851635	2.14519	NHLH1,2.p2	AK143166|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm9_v1_chr2_+_121115337_121115465	2.14371	NHLH1,2.p2	AF182213|Mtap1a|17754|microtubule-associated protein 1 A	NM_032393|Mtap1a|17754|microtubule-associated protein 1 A	AK044057|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr10_-_62041134_62041209	2.14335	NHLH1,2.p2	AK149629|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK003009|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK158730|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	BC055307|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	BC090974|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	BC046485|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK161007|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK129320|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK035659|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK141324|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	NM_028197|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene
mm9_v1_chr11_-_119409041_119409133	2.13732	NHLH1,2.p2	BC139018|Nptx1|18164|neuronal pentraxin 1	BC139020|Nptx1|18164|neuronal pentraxin 1	BC093479|Nptx1|18164|neuronal pentraxin 1	NM_008730|Nptx1|18164|neuronal pentraxin 1
mm9_v1_chr15_+_82105647_82105870	2.13506	NHLH1,2.p2	AK169916|Sept3|24050|septin 3	AK164861|Sept3|24050|septin 3	AK046722|Sept3|24050|septin 3	AK030668|Sept3|24050|septin 3	AK141915|Sept3|24050|septin 3
mm9_v1_chr8_-_125777949_125778247	2.13334	NHLH1,2.p2	AK051715|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK154409|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK155433|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK010402|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK005046|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK028751|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK151498|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	NM_028200|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	BC057621|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK032561|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AY751521|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene
mm9_v1_chr8_+_11728104_11728202	2.13236	NHLH1,2.p2	NM_001113517|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK129064|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK139156|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)
mm9_v1_chr15_+_99125768_99125839	2.12972	NHLH1,2.p2	AF135440|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	NM_018786|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)
mm9_v1_chr11_+_53333270_53333474	2.12968	NHLH1,2.p2	BC059248|Sept8|20362|septin 8	NM_033144|Sept8|20362|septin 8	AB093215|Sept8|20362|septin 8	AK144178|Sept8|20362|septin 8	BC049819|Sept8|20362|septin 8	BC037707|Sept8|20362|septin 8
mm9_v1_chr5_-_145927883_145927892	2.12912	NHLH1,2.p2	AK088764|Ptcd1|71799|pentatricopeptide repeat domain 1	BC004766|Ptcd1|71799|pentatricopeptide repeat domain 1
mm9_v1_chr2_-_130868823_130868823	2.1268	NHLH1,2.p2	AJ276870|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4	AJ276871|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4	AJ276872|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4	NM_001136063|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4
mm9_v1_chr2_-_92232731_92232888	2.12408	NHLH1,2.p2	BC072578|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AK147033|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AK053819|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chr17_-_24987239_24987278	2.11853	NHLH1,2.p2	AK141973|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1	AK157292|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1	NM_023480|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1	BC011330|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1
mm9_v1_chr18_-_25912453_25912483	2.11821	NHLH1,2.p2	AK161918|Celf4|108013|CUGBP, Elav-like family member 4	BC048405|Celf4|108013|CUGBP, Elav-like family member 4	BC052744|Celf4|108013|CUGBP, Elav-like family member 4	NM_001146292|Celf4|108013|CUGBP, Elav-like family member 4	NM_001146293|Celf4|108013|CUGBP, Elav-like family member 4	NM_001146294|Celf4|108013|CUGBP, Elav-like family member 4	NM_001146295|Celf4|108013|CUGBP, Elav-like family member 4	NM_001174074|Celf4|108013|CUGBP, Elav-like family member 4	NM_133195|Celf4|108013|CUGBP, Elav-like family member 4
mm9_v1_chr2_-_156138199_156138439	2.11265	NHLH1,2.p2	AK220179|Scand1|19018|SCAN domain-containing 1	BC010724|Scand1|19018|SCAN domain-containing 1	AF220501|Scand1|19018|SCAN domain-containing 1	AF106473|Scand1|19018|SCAN domain-containing 1	AK088253|Scand1|19018|SCAN domain-containing 1	AK009115|Scand1|19018|SCAN domain-containing 1	NM_020255|Scand1|19018|SCAN domain-containing 1
mm9_v1_chr6_+_114232767_114232820	2.10438	NHLH1,2.p2	AK042956|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1	BC059080|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1	AK047663|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1	AK053831|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1	AK053798|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1	AK052971|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1	AK053883|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm9_v1_chr10_+_80720251_80720289	2.10388	NHLH1,2.p2	AK079816|Matk|17179|megakaryocyte-associated tyrosine kinase	U05210|Matk|17179|megakaryocyte-associated tyrosine kinase	L27738|Matk|17179|megakaryocyte-associated tyrosine kinase	NM_010768|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr5_+_73398142_73398230	2.10147	NHLH1,2.p2	AK087479|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4	AK149202|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4	NM_173403|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4	BC132529|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4	BC138048|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4
mm9_v1_chr4_+_84851440_84851480	2.09907	NHLH1,2.p2	AF326561|Sh3gl2|20404|SH3-domain GRB2-like 2	AF326562|Sh3gl2|20404|SH3-domain GRB2-like 2
mm9_v1_chr17_+_34092753_34092872	2.09796	NHLH1,2.p2	AK051732|Vps52|224705|vacuolar protein sorting 52 (yeast)	AK052523|Vps52|224705|vacuolar protein sorting 52 (yeast)	NM_172620|Vps52|224705|vacuolar protein sorting 52 (yeast)	BC063329|Vps52|224705|vacuolar protein sorting 52 (yeast)	AK042520|Vps52|224705|vacuolar protein sorting 52 (yeast)
mm9_v1_chr15_+_74346853_74346867	2.09611	NHLH1,2.p2	AK147600|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr2_+_102498798_102498825	2.09576	NHLH1,2.p2	U75372|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr5_-_113739711_113739807	2.09428	NHLH1,2.p2	BC138049|Sgsm1|52850|small G protein signaling modulator 1	BC138050|Sgsm1|52850|small G protein signaling modulator 1	AK053555|Sgsm1|52850|small G protein signaling modulator 1	AK044716|Sgsm1|52850|small G protein signaling modulator 1	AK170021|Sgsm1|52850|small G protein signaling modulator 1	NM_001162965|Sgsm1|52850|small G protein signaling modulator 1	NM_172718|Sgsm1|52850|small G protein signaling modulator 1
mm9_v1_chr15_-_101966611_101966682	2.09315	NHLH1,2.p2	BC048820|Spryd3|223918|SPRY domain containing 3	NM_001033277|Spryd3|223918|SPRY domain containing 3	AK146689|Spryd3|223918|SPRY domain containing 3
mm9_v1_chr9_-_59201234_59201314	2.09239	NHLH1,2.p2	BC055797|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	BC089507|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	AK141430|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	BC092531|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	AK039560|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	AK089970|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	AK134734|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	BC145771|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	BC145773|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	NM_175325|Bbs4|102774|Bardet-Biedl syndrome 4 (human)
mm9_v1_chr2_-_127308234_127308234	2.09003	NHLH1,2.p2	DQ148500|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	NM_001111331|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr18_+_57292743_57292743	2.0894	NHLH1,2.p2	AK147238|Megf10|70417|multiple EGF-like-domains 10	NM_001001979|Megf10|70417|multiple EGF-like-domains 10
mm9_v1_chr5_-_122952179_122952182	2.0884	NHLH1,2.p2	AK220538|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr5_-_100845171_100845280	2.0872	NHLH1,2.p2	BC043942|Sec31a|69162|Sec31 homolog A (S. cerevisiae)	AK134681|Sec31a|69162|Sec31 homolog A (S. cerevisiae)	AK143455|Sec31a|69162|Sec31 homolog A (S. cerevisiae)	NM_026969|Sec31a|69162|Sec31 homolog A (S. cerevisiae)
mm9_v1_chr7_+_112574326_112574358	2.0855	NHLH1,2.p2	AK039721|Cckbr|12426|cholecystokinin B receptor	NM_007627|Cckbr|12426|cholecystokinin B receptor	AK028325|Cckbr|12426|cholecystokinin B receptor	BC103530|Cckbr|12426|cholecystokinin B receptor	BC103531|Cckbr|12426|cholecystokinin B receptor	BC103537|Cckbr|12426|cholecystokinin B receptor	BC103538|Cckbr|12426|cholecystokinin B receptor
mm9_v1_chr12_+_45370145_45370261	2.08502	NHLH1,2.p2	AK004621|Pnpla8|67452|patatin-like phospholipase domain containing 8	AK163211|Pnpla8|67452|patatin-like phospholipase domain containing 8	AK029616|Pnpla8|67452|patatin-like phospholipase domain containing 8	AK168475|Pnpla8|67452|patatin-like phospholipase domain containing 8	AK145776|Pnpla8|67452|patatin-like phospholipase domain containing 8	AB044139|Pnpla8|67452|patatin-like phospholipase domain containing 8
mm9_v1_chr2_-_80287218_80287228	2.08472	NHLH1,2.p2	AK019093|Frzb|20378|frizzled-related protein
mm9_v1_chr18_+_6765174_6765262	2.08346	NHLH1,2.p2	AK154920|Rab18|19330|RAB18, member RAS oncogene family	AK143673|Rab18|19330|RAB18, member RAS oncogene family	AK140901|Rab18|19330|RAB18, member RAS oncogene family	AK045514|Rab18|19330|RAB18, member RAS oncogene family	NM_181070|Rab18|19330|RAB18, member RAS oncogene family	BC056351|Rab18|19330|RAB18, member RAS oncogene family	AK146177|Rab18|19330|RAB18, member RAS oncogene family	AK146397|Rab18|19330|RAB18, member RAS oncogene family	L04966|Rab18|19330|RAB18, member RAS oncogene family	AB232612|Rab18|19330|RAB18, member RAS oncogene family	M79308|Rab18|19330|RAB18, member RAS oncogene family	X80333|Rab18|19330|RAB18, member RAS oncogene family
mm9_v1_chr10_+_80720191_80720236	2.08271	NHLH1,2.p2	AK018182|Matk|17179|megakaryocyte-associated tyrosine kinase	AK013606|Matk|17179|megakaryocyte-associated tyrosine kinase	S77473|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr12_+_50484907_50484951	2.08248	NHLH1,2.p2	BC064449|Foxg1|15228|forkhead box G1
mm9_v1_chr12_+_109661191_109661223	2.08227	NHLH1,2.p2	BC053094|Eml1|68519|echinoderm microtubule associated protein like 1
mm9_v1_chr1_-_53009546_53009683	2.0814	NHLH1,2.p2	AK010944|1700019D03Rik|67080|RIKEN cDNA 1700019D03 gene	AK010796|1700019D03Rik|67080|RIKEN cDNA 1700019D03 gene	NM_144953|1700019D03Rik|67080|RIKEN cDNA 1700019D03 gene
mm9_v1_chr4_-_35173039_35173134	2.07829	NHLH1,2.p2	AK167354|3110043O21Rik|73205|RIKEN cDNA 3110043O21 gene	AK014175|3110043O21Rik|73205|RIKEN cDNA 3110043O21 gene	AK154817|3110043O21Rik|73205|RIKEN cDNA 3110043O21 gene	NM_001081343|3110043O21Rik|73205|RIKEN cDNA 3110043O21 gene
mm9_v1_chr5_-_45841351_45841377	2.0777	NHLH1,2.p2	AK161660|Qdpr|110391|quinoid dihydropteridine reductase
mm9_v1_chr17_+_56109884_56109905	2.0776	NHLH1,2.p2	AK142491|Shd|20420|src homology 2 domain-containing transforming protein D	NM_001159523|Shd|20420|src homology 2 domain-containing transforming protein D	NM_009168|Shd|20420|src homology 2 domain-containing transforming protein D	AB018423|Shd|20420|src homology 2 domain-containing transforming protein D
mm9_v1_chr6_-_85324557_85324691	2.07613	NHLH1,2.p2	BC141380|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)	AK154922|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)	AK129230|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)	NM_001003955|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)	NM_177466|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)
mm9_v1_chr4_+_134024234_134024333	2.07518	NHLH1,2.p2	NM_019641|Stmn1|16765|stathmin 1	AB064953|Stmn1|16765|stathmin 1	AK002606|Stmn1|16765|stathmin 1	AK012231|Stmn1|16765|stathmin 1	AK012347|Stmn1|16765|stathmin 1	AK014108|Stmn1|16765|stathmin 1	AK088628|Stmn1|16765|stathmin 1	AK013302|Stmn1|16765|stathmin 1	BC010581|Stmn1|16765|stathmin 1	BC031831|Stmn1|16765|stathmin 1	BC054396|Stmn1|16765|stathmin 1
mm9_v1_chr15_+_74346624_74346672	2.07364	NHLH1,2.p2	AK147607|Bai1|107831|brain-specific angiogenesis inhibitor 1	NM_174991|Bai1|107831|brain-specific angiogenesis inhibitor 1	AK147456|Bai1|107831|brain-specific angiogenesis inhibitor 1	AK147459|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr12_+_110798661_110798666	2.06518	NHLH1,2.p2	AK019916|Meg3|17263|maternally expressed 3
mm9_v1_chr13_-_58009650_58009651	2.06401	NHLH1,2.p2	AK051191|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
mm9_v1_chrX_+_139952975_139953253	2.06262	NHLH1,2.p2	AK158893|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195048|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AK031853|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr7_+_107756069_107756204	2.0609	NHLH1,2.p2	AK169842|Rab6|19346|RAB6, member RAS oncogene family	NM_001163663|Rab6|19346|RAB6, member RAS oncogene family	NM_024287|Rab6|19346|RAB6, member RAS oncogene family	AK154012|Rab6|19346|RAB6, member RAS oncogene family
mm9_v1_chr2_+_25251393_25251477	2.0583	NHLH1,2.p2	NM_009849|Entpd2|12496|ectonucleoside triphosphate diphosphohydrolase 2	AK002553|Entpd2|12496|ectonucleoside triphosphate diphosphohydrolase 2	U91511|Entpd2|12496|ectonucleoside triphosphate diphosphohydrolase 2	AK172281|Entpd2|12496|ectonucleoside triphosphate diphosphohydrolase 2	AY376711|Entpd2|12496|ectonucleoside triphosphate diphosphohydrolase 2	BC011241|Entpd2|12496|ectonucleoside triphosphate diphosphohydrolase 2	AF042811|Entpd2|12496|ectonucleoside triphosphate diphosphohydrolase 2
mm9_v1_chr10_-_115910578_115910595	2.05753	NHLH1,2.p2	AF215892|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4	BC117779|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4	NM_021452|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4	BC048471|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4
mm9_v1_chr15_-_37722161_37722182	2.05559	NHLH1,2.p2	AK048440|Ncald|52589|neurocalcin delta	NM_134094|Ncald|52589|neurocalcin delta
mm9_v1_chr17_-_6476249_6476283	2.05523	NHLH1,2.p2	AK166076|Tmem181b-ps|547127|transmembrane protein 181B, pseudogene	BC147312|Tmem181b-ps|547127|transmembrane protein 181B, pseudogene	BC147313|Tmem181b-ps|547127|transmembrane protein 181B, pseudogene
mm9_v1_chr15_+_99543952_99544029	2.05432	NHLH1,2.p2	AK190322|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr15_+_88890140_88890179	2.05369	NHLH1,2.p2	NM_001002005|Panx2|406218|pannexin 2	EU446266|Panx2|406218|pannexin 2
mm9_v1_chr2_-_5635228_5635384	2.05189	NHLH1,2.p2	AK052401|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	BC141413|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	BC141414|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID
mm9_v1_chr19_+_17030600_17030608	2.05091	NHLH1,2.p2	AK165582|Prune2|353211|prune homolog 2 (Drosophila)	AK020727|Prune2|353211|prune homolog 2 (Drosophila)	AK039241|Prune2|353211|prune homolog 2 (Drosophila)	AK165913|Prune2|353211|prune homolog 2 (Drosophila)	NM_181348|Prune2|353211|prune homolog 2 (Drosophila)
mm9_v1_chr5_+_109058850_109059020	2.05075	NHLH1,2.p2	AK034579|Tmem175|72392|transmembrane protein 175	AK038865|Tmem175|72392|transmembrane protein 175	AK076446|Tmem175|72392|transmembrane protein 175	AK082765|Tmem175|72392|transmembrane protein 175	AK170273|Tmem175|72392|transmembrane protein 175	AK013879|Tmem175|72392|transmembrane protein 175	BC005542|Tmem175|72392|transmembrane protein 175
mm9_v1_chr14_+_70977874_70977905	2.0504	NHLH1,2.p2	BC036718|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18
mm9_v1_chr12_-_102146390_102146407	2.04502	NHLH1,2.p2	AK087410|Gpr68|238377|G protein-coupled receptor 68	NM_001177673|Gpr68|238377|G protein-coupled receptor 68	NM_175493|Gpr68|238377|G protein-coupled receptor 68
mm9_v1_chr2_-_73613381_73613446	2.0424	NHLH1,2.p2	NM_001113246|Chn1|108699|chimerin (chimaerin) 1	NM_001166603|Chn1|108699|chimerin (chimaerin) 1
mm9_v1_chr14_+_21537992_21538048	2.03893	NHLH1,2.p2	BC030914|2310021P13Rik|268721|RIKEN cDNA 2310021P13 gene
mm9_v1_chr2_-_155340538_155340581	2.02591	NHLH1,2.p2	BC005772|Ggt7|207182|gamma-glutamyltransferase 7	AK032051|Ggt7|207182|gamma-glutamyltransferase 7	NM_144786|Ggt7|207182|gamma-glutamyltransferase 7
mm9_v1_chr15_+_101933364_101933418	2.02203	NHLH1,2.p2	AK147789|Tenc1|209039|tensin like C1 domain-containing phosphatase	AK147941|Tenc1|209039|tensin like C1 domain-containing phosphatase	BC042190|Tenc1|209039|tensin like C1 domain-containing phosphatase	NM_153533|Tenc1|209039|tensin like C1 domain-containing phosphatase
mm9_v1_chr5_+_109058788_109058836	2.02142	NHLH1,2.p2	AK049952|Tmem175|72392|transmembrane protein 175	NM_001163531|Tmem175|72392|transmembrane protein 175	NM_001163532|Tmem175|72392|transmembrane protein 175	NM_028223|Tmem175|72392|transmembrane protein 175
mm9_v1_chr13_-_6647924_6648034	2.0179	NHLH1,2.p2	CT010268|Pfkp|56421|phosphofructokinase, platelet	AY779275|Pfkp|56421|phosphofructokinase, platelet	AY779276|Pfkp|56421|phosphofructokinase, platelet	BC006926|Pfkp|56421|phosphofructokinase, platelet	AK165422|Pfkp|56421|phosphofructokinase, platelet	AK165425|Pfkp|56421|phosphofructokinase, platelet	Y19008|Pfkp|56421|phosphofructokinase, platelet	AK049841|Pfkp|56421|phosphofructokinase, platelet	AK170624|Pfkp|56421|phosphofructokinase, platelet	NM_019703|Pfkp|56421|phosphofructokinase, platelet	AK004790|Pfkp|56421|phosphofructokinase, platelet	AK020367|Pfkp|56421|phosphofructokinase, platelet	AK054193|Pfkp|56421|phosphofructokinase, platelet	AK076803|Pfkp|56421|phosphofructokinase, platelet	AK078254|Pfkp|56421|phosphofructokinase, platelet	AK098162|Pfkp|56421|phosphofructokinase, platelet	AK152670|Pfkp|56421|phosphofructokinase, platelet	AK154125|Pfkp|56421|phosphofructokinase, platelet	AK171062|Pfkp|56421|phosphofructokinase, platelet	AF123533|Pfkp|56421|phosphofructokinase, platelet
mm9_v1_chr17_-_66799086_66799133	2.0178	NHLH1,2.p2	AK147631|1110012J17Rik|68617|RIKEN cDNA 1110012J17 gene	AK147691|1110012J17Rik|68617|RIKEN cDNA 1110012J17 gene	AK147205|1110012J17Rik|68617|RIKEN cDNA 1110012J17 gene	NM_001114098|1110012J17Rik|68617|RIKEN cDNA 1110012J17 gene	NM_172963|1110012J17Rik|68617|RIKEN cDNA 1110012J17 gene
mm9_v1_chr11_+_101107726_101107744	2.01565	NHLH1,2.p2	AK003810|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AF146523|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	BC051201|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	BC069992|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AJ250490|Ramp2|54409|receptor (calcitonin) activity modifying protein 2
mm9_v1_chr18_+_38115192_38115292	2.0145	NHLH1,2.p2	NM_153793|Rell2|225392|RELT-like 2	AK044097|Rell2|225392|RELT-like 2	BC038500|Rell2|225392|RELT-like 2
mm9_v1_chr5_-_120953567_120953653	2.0132	NHLH1,2.p2	AK030234|Plbd2|71772|phospholipase B domain containing 2	BC026395|Plbd2|71772|phospholipase B domain containing 2	BC038605|Plbd2|71772|phospholipase B domain containing 2	AF217003|Plbd2|71772|phospholipase B domain containing 2	BC060095|Plbd2|71772|phospholipase B domain containing 2	AK164220|Plbd2|71772|phospholipase B domain containing 2	AK170631|Plbd2|71772|phospholipase B domain containing 2	BC048826|Plbd2|71772|phospholipase B domain containing 2	AK043608|Plbd2|71772|phospholipase B domain containing 2	AK046937|Plbd2|71772|phospholipase B domain containing 2	AK150201|Plbd2|71772|phospholipase B domain containing 2	AK170387|Plbd2|71772|phospholipase B domain containing 2	AK032930|Plbd2|71772|phospholipase B domain containing 2	AK042089|Plbd2|71772|phospholipase B domain containing 2	AK029813|Plbd2|71772|phospholipase B domain containing 2	NM_023625|Plbd2|71772|phospholipase B domain containing 2	AK004973|Plbd2|71772|phospholipase B domain containing 2
mm9_v1_chr19_-_10379361_10379369	2.01244	NHLH1,2.p2	NM_198114|Dagla|269060|diacylglycerol lipase, alpha
mm9_v1_chr17_-_66868909_66869045	2.01006	NHLH1,2.p2	AB232607|Rab12|19328|RAB12, member RAS oncogene family	NM_024448|Rab12|19328|RAB12, member RAS oncogene family
mm9_v1_chr14_-_65716907_65716928	2.00967	NHLH1,2.p2	
mm9_v1_chr2_+_91490332_91490401	2.00838	NHLH1,2.p2	AK079048|Arhgap1|228359|Rho GTPase activating protein 1	BC089306|Arhgap1|228359|Rho GTPase activating protein 1	BC006592|Arhgap1|228359|Rho GTPase activating protein 1	AK085554|Arhgap1|228359|Rho GTPase activating protein 1
mm9_v1_chr15_-_77137015_77137087	2.00465	NHLH1,2.p2	BC027263|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr2_-_26092876_26092939	2.0038	NHLH1,2.p2	AK157992|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	AK140324|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	AK165642|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	BC030934|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	NM_153559|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2
mm9_v1_chr9_+_110147867_110148101	1.99358	NHLH1,2.p2	BC055736|Cspg5|29873|chondroitin sulfate proteoglycan 5	AK138233|Cspg5|29873|chondroitin sulfate proteoglycan 5	AF133700|Cspg5|29873|chondroitin sulfate proteoglycan 5
mm9_v1_chr10_-_61693914_61693931	1.99148	NHLH1,2.p2	BC003872|Tspan15|70423|tetraspanin 15
mm9_v1_chr3_+_108086993_108087000	1.99135	NHLH1,2.p2	AK147442|Sort1|20661|sortilin 1
mm9_v1_chr10_+_81096440_81096463	1.98817	NHLH1,2.p2	AK043638|Ankrd24|70615|ankyrin repeat domain 24	AK173316|Ankrd24|70615|ankyrin repeat domain 24
mm9_v1_chr2_+_28368603_28368686	1.98638	NHLH1,2.p2	NM_001145834|Ralgds|19730|ral guanine nucleotide dissociation stimulator	NM_009058|Ralgds|19730|ral guanine nucleotide dissociation stimulator
mm9_v1_chr6_+_29867012_29867023	1.98627	NHLH1,2.p2	AK041004|Fam40b|320609|family with sequence similarity 40, member B	AK042073|Fam40b|320609|family with sequence similarity 40, member B	AK052271|Fam40b|320609|family with sequence similarity 40, member B	AK163706|Fam40b|320609|family with sequence similarity 40, member B	NM_001037740|Fam40b|320609|family with sequence similarity 40, member B	NM_177204|Fam40b|320609|family with sequence similarity 40, member B	BC147502|Fam40b|320609|family with sequence similarity 40, member B	BC172034|Fam40b|320609|family with sequence similarity 40, member B
mm9_v1_chr14_+_119254123_119254192	1.98573	NHLH1,2.p2	NM_001160099|Cldn10|58187|claudin 10	NM_021386|Cldn10|58187|claudin 10	BC029019|Cldn10|58187|claudin 10
mm9_v1_chr19_-_5085471_5085483	1.98365	NHLH1,2.p2	BC072634|Tmem151a|381199|transmembrane protein 151A	NM_001001885|Tmem151a|381199|transmembrane protein 151A
mm9_v1_chr8_+_12915892_12915957	1.98345	NHLH1,2.p2	NM_178076|Mcf2l|17207|mcf.2 transforming sequence-like	AK082849|Mcf2l|17207|mcf.2 transforming sequence-like	AK048898|Mcf2l|17207|mcf.2 transforming sequence-like	BC058622|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr14_-_66832383_66832388	1.98267	NHLH1,2.p2	BC137704|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	BC144849|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	NM_001162366|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta
mm9_v1_chr7_-_28231535_28231646	1.98187	NHLH1,2.p2	AK006254|Spnb4|80297|spectrin beta 4	AB055618|Spnb4|80297|spectrin beta 4	NM_032610|Spnb4|80297|spectrin beta 4	AK147558|Spnb4|80297|spectrin beta 4
mm9_v1_chr17_-_25393220_25393308	1.98006	NHLH1,2.p2	BC158116|Baiap3|545192|BAI1-associated protein 3	NM_001163270|Baiap3|545192|BAI1-associated protein 3
mm9_v1_chr8_-_109580565_109580585	1.97539	NHLH1,2.p2	BC094654|Cog8|97484|component of oligomeric golgi complex 8	AK156186|Cog8|97484|component of oligomeric golgi complex 8	AK159569|Cog8|97484|component of oligomeric golgi complex 8	AK083734|Cog8|97484|component of oligomeric golgi complex 8	AK145727|Cog8|97484|component of oligomeric golgi complex 8	AK153617|Cog8|97484|component of oligomeric golgi complex 8	AK049957|Cog8|97484|component of oligomeric golgi complex 8
mm9_v1_chr3_-_143868210_143868237	1.97224	NHLH1,2.p2	NM_010723|Lmo4|16911|LIM domain only 4
mm9_v1_chr11_+_16157685_16157805	1.97128	NHLH1,2.p2	AK033048|Vstm2a|211739|V-set and transmembrane domain containing 2A	NM_145967|Vstm2a|211739|V-set and transmembrane domain containing 2A	AK032473|Vstm2a|211739|V-set and transmembrane domain containing 2A	BC027127|Vstm2a|211739|V-set and transmembrane domain containing 2A	AK079096|Vstm2a|211739|V-set and transmembrane domain containing 2A	AK137363|Vstm2a|211739|V-set and transmembrane domain containing 2A
mm9_v1_chr8_-_23916037_23916141	1.96986	NHLH1,2.p2	BC030484|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	BC027301|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK017991|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK134634|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK082988|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK080668|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK081220|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AY039763|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK077365|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	NM_001122820|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	NM_029505|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit
mm9_v1_chr10_-_8605668_8605870	1.96906	NHLH1,2.p2	AJ507736|Sash1|70097|SAM and SH3 domain containing 1	AK149872|Sash1|70097|SAM and SH3 domain containing 1	AK049453|Sash1|70097|SAM and SH3 domain containing 1	NM_175155|Sash1|70097|SAM and SH3 domain containing 1
mm9_v1_chr11_+_103994128_103994138	1.96706	NHLH1,2.p2	AK144430|Crhr1|12921|corticotropin releasing hormone receptor 1
mm9_v1_chr10_-_81007727_81007945	1.96673	NHLH1,2.p2	M55411|Gna11|14672|guanine nucleotide binding protein, alpha 11	BC011169|Gna11|14672|guanine nucleotide binding protein, alpha 11	AK143685|Gna11|14672|guanine nucleotide binding protein, alpha 11	NM_010301|Gna11|14672|guanine nucleotide binding protein, alpha 11
mm9_v1_chr7_+_148748102_148748107	1.96659	NHLH1,2.p2	X14972|Ap2a2|11772|adaptor protein complex AP-2, alpha 2 subunit
mm9_v1_chr10_+_79167102_79167137	1.9586	NHLH1,2.p2	NM_001077184|Bsg|12215|basigin	NM_009768|Bsg|12215|basigin
mm9_v1_chr6_-_85452851_85452987	1.95781	NHLH1,2.p2	AK147681|Fbxo41|330369|F-box protein 41	AK147230|Fbxo41|330369|F-box protein 41	NM_001001160|Fbxo41|330369|F-box protein 41	BC070445|Fbxo41|330369|F-box protein 41
mm9_v1_chr13_+_104968913_104969020	1.95771	NHLH1,2.p2	AK042070|Trim23|81003|tripartite motif-containing 23	AK018217|Trim23|81003|tripartite motif-containing 23	AK029533|Trim23|81003|tripartite motif-containing 23	AK030843|Trim23|81003|tripartite motif-containing 23	AK036210|Trim23|81003|tripartite motif-containing 23	AK088922|Trim23|81003|tripartite motif-containing 23	BC056390|Trim23|81003|tripartite motif-containing 23	BC059017|Trim23|81003|tripartite motif-containing 23
mm9_v1_chr6_-_21802514_21802514	1.95769	NHLH1,2.p2	AK050737|Tspan12|269831|tetraspanin 12	NM_173007|Tspan12|269831|tetraspanin 12
mm9_v1_chr7_-_88599560_88599643	1.95761	NHLH1,2.p2	BC125476|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	BC144948|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	NM_007755|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	Y08260|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	AK136088|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1
mm9_v1_chr13_-_54712629_54712744	1.95587	NHLH1,2.p2	AK029382|Cltb|74325|clathrin, light polypeptide (Lcb)	NM_028870|Cltb|74325|clathrin, light polypeptide (Lcb)	BC070404|Cltb|74325|clathrin, light polypeptide (Lcb)	AK045989|Cltb|74325|clathrin, light polypeptide (Lcb)	AK159480|Cltb|74325|clathrin, light polypeptide (Lcb)	AK167531|Cltb|74325|clathrin, light polypeptide (Lcb)	AK146816|Cltb|74325|clathrin, light polypeptide (Lcb)
mm9_v1_chr5_-_84846256_84846332	1.95569	NHLH1,2.p2	AK089143|Epha5|13839|Eph receptor A5
mm9_v1_chr7_+_112789041_112789105	1.95433	NHLH1,2.p2	BC009158|Fxc1|14356|fractured callus expressed transcript 1	NM_019502|Fxc1|14356|fractured callus expressed transcript 1	AK003368|Fxc1|14356|fractured callus expressed transcript 1	AK003421|Fxc1|14356|fractured callus expressed transcript 1
mm9_v1_chr6_+_87837883_87838019	1.95313	NHLH1,2.p2	AK169256|Copg|54161|coatomer protein complex, subunit gamma	AK172519|Copg|54161|coatomer protein complex, subunit gamma	AK147895|Copg|54161|coatomer protein complex, subunit gamma	AK151284|Copg|54161|coatomer protein complex, subunit gamma	AK151816|Copg|54161|coatomer protein complex, subunit gamma	AK153142|Copg|54161|coatomer protein complex, subunit gamma	AF187079|Copg|54161|coatomer protein complex, subunit gamma	NM_017477|Copg|54161|coatomer protein complex, subunit gamma	AK171950|Copg|54161|coatomer protein complex, subunit gamma	AK080451|Copg|54161|coatomer protein complex, subunit gamma	BC024686|Copg|54161|coatomer protein complex, subunit gamma	AK164280|Copg|54161|coatomer protein complex, subunit gamma	BC024896|Copg|54161|coatomer protein complex, subunit gamma	BC056168|Copg|54161|coatomer protein complex, subunit gamma	NM_201244|Copg|54161|coatomer protein complex, subunit gamma	AK049417|Copg|54161|coatomer protein complex, subunit gamma	AK077461|Copg|54161|coatomer protein complex, subunit gamma	AK018151|Copg|54161|coatomer protein complex, subunit gamma	AK187461|Copg|54161|coatomer protein complex, subunit gamma	AK206833|Copg|54161|coatomer protein complex, subunit gamma
mm9_v1_chr7_+_134716896_134716950	1.94797	NHLH1,2.p2	AK089062|Phkg2|68961|phosphorylase kinase, gamma 2 (testis)	AK005277|Phkg2|68961|phosphorylase kinase, gamma 2 (testis)	BC138913|Phkg2|68961|phosphorylase kinase, gamma 2 (testis)	BC145734|Phkg2|68961|phosphorylase kinase, gamma 2 (testis)
mm9_v1_chr7_+_28043818_28043826	1.94607	NHLH1,2.p2	AK147523|Numbl|18223|numb-like
mm9_v1_chr9_-_31019412_31019424	1.94406	NHLH1,2.p2	AK164012|Aplp2|11804|amyloid beta (A4) precursor-like protein 2
mm9_v1_chr8_-_67171481_67171562	1.9407	NHLH1,2.p2	AK002935|Cpe|12876|carboxypeptidase E	AK013509|Cpe|12876|carboxypeptidase E
mm9_v1_chr5_+_124562306_124562355	1.93942	NHLH1,2.p2	AK168946|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	BC069872|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	AK004943|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	AK017497|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	AK018534|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	NM_025671|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	AK004916|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2
mm9_v1_chr14_-_71028756_71028866	1.93757	NHLH1,2.p2	AK162866|Epb4.9|13829|erythrocyte protein band 4.9
mm9_v1_chr14_-_55734213_55734388	1.93549	NHLH1,2.p2	AY350744|Jph4|319984|junctophilin 4	BC052049|Jph4|319984|junctophilin 4	AK031092|Jph4|319984|junctophilin 4	NM_001003829|Jph4|319984|junctophilin 4	AK048607|Jph4|319984|junctophilin 4	AK148135|Jph4|319984|junctophilin 4
mm9_v1_chr14_+_79826199_79826317	1.93378	NHLH1,2.p2	AK135854|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7	BC096019|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7	NM_001024135|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7
mm9_v1_chr9_-_45714487_45714524	1.9272	NHLH1,2.p2	AK032376|Rnf214|235315|ring finger protein 214
mm9_v1_chr7_-_125272997_125273040	1.92406	NHLH1,2.p2	AK217186|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK176958|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	EF437380|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1
mm9_v1_chr6_+_54222814_54222856	1.91903	NHLH1,2.p2	BC051139|Chn2|69993|chimerin (chimaerin) 2	NM_023543|Chn2|69993|chimerin (chimaerin) 2	BC141060|Chn2|69993|chimerin (chimaerin) 2
mm9_v1_chr1_+_187156018_187156095	1.91843	NHLH1,2.p2	AK151931|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	NM_011794|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	AK093938|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	AK008714|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	AK008091|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	AK150877|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	AK152009|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	AK154435|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	AF125043|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	BC011036|Bpnt1|23827|bisphosphate 3'-nucleotidase 1
mm9_v1_chr8_-_97220127_97220176	1.91544	NHLH1,2.p2	AK018198|Pllp|67801|plasma membrane proteolipid	AK032540|Pllp|67801|plasma membrane proteolipid	BC024534|Pllp|67801|plasma membrane proteolipid	AK002477|Pllp|67801|plasma membrane proteolipid	NM_026385|Pllp|67801|plasma membrane proteolipid
mm9_v1_chr8_+_109555200_109555247	1.91178	NHLH1,2.p2	AK159117|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK047821|Vps4a|116733|vacuolar protein sorting 4a (yeast)	BC018368|Vps4a|116733|vacuolar protein sorting 4a (yeast)	NM_126165|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK169949|Vps4a|116733|vacuolar protein sorting 4a (yeast)
mm9_v1_chr7_+_148247172_148247172	1.91097	NHLH1,2.p2	AB114827|B4galnt4|330671|beta-1,4-N-acetyl-galactosaminyl transferase 4	NM_177897|B4galnt4|330671|beta-1,4-N-acetyl-galactosaminyl transferase 4
mm9_v1_chr13_-_96214609_96214785	1.90987	NHLH1,2.p2	AK139404|Crhbp|12919|corticotropin releasing hormone binding protein	AK157912|Crhbp|12919|corticotropin releasing hormone binding protein	BC061247|Crhbp|12919|corticotropin releasing hormone binding protein	AK135067|Crhbp|12919|corticotropin releasing hormone binding protein	NM_198408|Crhbp|12919|corticotropin releasing hormone binding protein
mm9_v1_chr5_-_72978788_72978788	1.90052	NHLH1,2.p2	AK084047|Gm5868|545758|predicted gene 5868	NM_001024147|Gm5868|545758|predicted gene 5868
mm9_v1_chr6_-_121423682_121423717	1.89948	NHLH1,2.p2	AK122446|Iqsec3|243621|IQ motif and Sec7 domain 3	AK147268|Iqsec3|243621|IQ motif and Sec7 domain 3	AK169437|Iqsec3|243621|IQ motif and Sec7 domain 3	NM_001033354|Iqsec3|243621|IQ motif and Sec7 domain 3
mm9_v1_chr2_+_174109820_174109853	1.89896	NHLH1,2.p2	AK039035|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_019690|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_022000|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AF107848|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK161197|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AF175305|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AJ010163|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr19_+_23215725_23215754	1.89676	NHLH1,2.p2	BC106117|Klf9|16601|Kruppel-like factor 9
mm9_v1_chrX_-_137077133_137077229	1.89644	NHLH1,2.p2	AF201287|Tsc22d3|14605|TSC22 domain family, member 3
mm9_v1_chr15_+_88890519_88890533	1.89442	NHLH1,2.p2	DQ093579|Panx2|406218|pannexin 2
mm9_v1_chr3_+_62142698_62142868	1.8917	NHLH1,2.p2	NM_001081295|Arhgef26|622434|Rho guanine nucleotide exchange factor (GEF) 26
mm9_v1_chrX_-_9240025_9240132	1.88481	NHLH1,2.p2	BC030032|Dynlt3|67117|dynein light chain Tctex-type 3	AK010186|Dynlt3|67117|dynein light chain Tctex-type 3	AK018842|Dynlt3|67117|dynein light chain Tctex-type 3	AK088277|Dynlt3|67117|dynein light chain Tctex-type 3	NM_025975|Dynlt3|67117|dynein light chain Tctex-type 3
mm9_v1_chr3_+_64913564_64913693	1.87214	NHLH1,2.p2	BC014701|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	NM_010597|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	U65591|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm9_v1_chr2_-_102241003_102241049	1.86853	NHLH1,2.p2	AJ249129|Trim44|80985|tripartite motif-containing 44	BC098369|Trim44|80985|tripartite motif-containing 44
mm9_v1_chr8_+_108225028_108225110	1.86842	NHLH1,2.p2	AK019153|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	NM_001047436|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)
mm9_v1_chr18_+_37880036_37880207	1.86709	NHLH1,2.p2	AK083581|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	BC138701|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	AY013806|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	NM_033576|Pcdhgb4|93701|protocadherin gamma subfamily B, 4
mm9_v1_chrX_-_16394443_16394525	1.86633	NHLH1,2.p2	AK031833|Maob|109731|monoamine oxidase B	BC113182|Maob|109731|monoamine oxidase B	BC113788|Maob|109731|monoamine oxidase B	AK054050|Maob|109731|monoamine oxidase B	NM_172778|Maob|109731|monoamine oxidase B
mm9_v1_chr17_-_36034018_36034097	1.86439	NHLH1,2.p2	AK172070|2310061I04Rik|69662|RIKEN cDNA 2310061I04 gene	AK038622|2310061I04Rik|69662|RIKEN cDNA 2310061I04 gene	AK145087|2310061I04Rik|69662|RIKEN cDNA 2310061I04 gene
mm9_v1_chr18_+_38456280_38456312	1.86283	NHLH1,2.p2	NM_001164622|Rnf14|56736|ring finger protein 14	NM_020012|Rnf14|56736|ring finger protein 14
mm9_v1_chr2_-_140497204_140497211	1.86205	NHLH1,2.p2	AK028252|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK031464|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK161100|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	NM_001172160|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	NM_178382|Flrt3|71436|fibronectin leucine rich transmembrane protein 3
mm9_v1_chr15_+_26238802_26238874	1.86121	NHLH1,2.p2	AK035990|March11|211147|membrane-associated ring finger (C3HC4) 11	NM_177597|March11|211147|membrane-associated ring finger (C3HC4) 11	AK162044|March11|211147|membrane-associated ring finger (C3HC4) 11	BC139422|March11|211147|membrane-associated ring finger (C3HC4) 11	BC139423|March11|211147|membrane-associated ring finger (C3HC4) 11
mm9_v1_chr5_+_31167731_31167889	1.85992	NHLH1,2.p2	AK210919|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3
mm9_v1_chr10_-_120748007_120748075	1.85962	NHLH1,2.p2	AK173079|Tbc1d30|74694|TBC1 domain family, member 30	AK044521|Tbc1d30|74694|TBC1 domain family, member 30	BC072607|Tbc1d30|74694|TBC1 domain family, member 30	AK049989|Tbc1d30|74694|TBC1 domain family, member 30
mm9_v1_chr1_+_20880682_20880687	1.85822	NHLH1,2.p2	AK029772|Paqr8|74229|progestin and adipoQ receptor family member VIII
mm9_v1_chr5_-_145927929_145927972	1.85714	NHLH1,2.p2	AK151064|Ptcd1|71799|pentatricopeptide repeat domain 1	AK152077|Ptcd1|71799|pentatricopeptide repeat domain 1	AK153366|Ptcd1|71799|pentatricopeptide repeat domain 1	NM_133735|Ptcd1|71799|pentatricopeptide repeat domain 1
mm9_v1_chr1_+_16655263_16655349	1.85707	NHLH1,2.p2	NM_026392|Tmem70|70397|transmembrane protein 70	NM_027415|Tmem70|70397|transmembrane protein 70	AK003839|Tmem70|70397|transmembrane protein 70	AK005075|Tmem70|70397|transmembrane protein 70	AK008955|Tmem70|70397|transmembrane protein 70	AK151280|Tmem70|70397|transmembrane protein 70	AK169031|Tmem70|70397|transmembrane protein 70	BC011320|Tmem70|70397|transmembrane protein 70	AK167069|Tmem70|70397|transmembrane protein 70
mm9_v1_chr2_+_156547014_156547227	1.85326	NHLH1,2.p2	NM_001042487|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	BC085475|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr8_-_128422192_128422192	1.84344	NHLH1,2.p2	BC068235|Pcnxl2|270109|pecanex-like 2 (Drosophila)	NM_175561|Pcnxl2|270109|pecanex-like 2 (Drosophila)
mm9_v1_chr19_-_7061867_7061910	1.84308	NHLH1,2.p2	U43837|Vegfb|22340|vascular endothelial growth factor B	AK187930|Vegfb|22340|vascular endothelial growth factor B	AK184156|Vegfb|22340|vascular endothelial growth factor B	AK184635|Vegfb|22340|vascular endothelial growth factor B
mm9_v1_chr7_+_134716853_134716888	1.84106	NHLH1,2.p2	AK079680|Phkg2|68961|phosphorylase kinase, gamma 2 (testis)	NM_026888|Phkg2|68961|phosphorylase kinase, gamma 2 (testis)
mm9_v1_chr10_+_13685882_13685927	1.83997	NHLH1,2.p2	AK147419|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2
mm9_v1_chr3_+_146515330_146515360	1.83675	NHLH1,2.p2	NM_027594|Ttll7|70892|tubulin tyrosine ligase-like family, member 7
mm9_v1_chr5_-_122952228_122952237	1.83622	NHLH1,2.p2	NM_001110140|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	NM_009722|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr8_+_86939262_86939275	1.8356	NHLH1,2.p2	AK147288|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	NM_007578|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147277|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147498|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147697|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm9_v1_chr7_-_126127713_126127734	1.83556	NHLH1,2.p2	AB030197|Gprc5b|64297|G protein-coupled receptor, family C, group 5, member B
mm9_v1_chrX_+_95345000_95345120	1.83221	NHLH1,2.p2	X59592|Ar|11835|androgen receptor	S56585|Ar|11835|androgen receptor	AK133647|Ar|11835|androgen receptor	NM_013476|Ar|11835|androgen receptor	X53779|Ar|11835|androgen receptor	X59411|Ar|11835|androgen receptor	M37890|Ar|11835|androgen receptor
mm9_v1_chr14_-_70205184_70205341	1.83133	NHLH1,2.p2	AK081100|Rhobtb2|246710|Rho-related BTB domain containing 2	AK122354|Rhobtb2|246710|Rho-related BTB domain containing 2	BC026836|Rhobtb2|246710|Rho-related BTB domain containing 2
mm9_v1_chr10_-_77432541_77432616	1.82952	NHLH1,2.p2	AK039405|Trpm2|28240|transient receptor potential cation channel, subfamily M, member 2	AB166747|Trpm2|28240|transient receptor potential cation channel, subfamily M, member 2	NM_138301|Trpm2|28240|transient receptor potential cation channel, subfamily M, member 2
mm9_v1_chr11_+_121296252_121296285	1.82798	NHLH1,2.p2	NM_001038699|Fn3k|63828|fructosamine 3 kinase	NM_022014|Fn3k|63828|fructosamine 3 kinase	AK010151|Fn3k|63828|fructosamine 3 kinase	BC064710|Fn3k|63828|fructosamine 3 kinase	AJ404616|Fn3k|63828|fructosamine 3 kinase	AK030362|Fn3k|63828|fructosamine 3 kinase	AK172235|Fn3k|63828|fructosamine 3 kinase	BC054374|Fn3k|63828|fructosamine 3 kinase
mm9_v1_chr2_-_90420626_90420803	1.82551	NHLH1,2.p2	AY038891|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AY039232|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AK147318|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AK147556|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	D45212|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	NM_008982|Ptprj|19271|protein tyrosine phosphatase, receptor type, J
mm9_v1_chr15_-_79635069_79635133	1.82322	NHLH1,2.p2	AY394487|Nptxr|73340|neuronal pentraxin receptor	AF316612|Nptxr|73340|neuronal pentraxin receptor	BC141096|Nptxr|73340|neuronal pentraxin receptor
mm9_v1_chr11_+_105451296_105451348	1.82205	NHLH1,2.p2	AK019982|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	NM_181071|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	AK051973|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm9_v1_chr4_+_108673212_108673409	1.81973	NHLH1,2.p2	AK166470|Nrd1|230598|nardilysin, N-arginine dibasic convertase, NRD convertase 1	BC036128|Nrd1|230598|nardilysin, N-arginine dibasic convertase, NRD convertase 1	BC026832|Nrd1|230598|nardilysin, N-arginine dibasic convertase, NRD convertase 1	AK031548|Nrd1|230598|nardilysin, N-arginine dibasic convertase, NRD convertase 1	NM_146150|Nrd1|230598|nardilysin, N-arginine dibasic convertase, NRD convertase 1
mm9_v1_chr1_+_57434514_57434552	1.81835	NHLH1,2.p2	AK006906|1700066M21Rik|73467|RIKEN cDNA 1700066M21 gene
mm9_v1_chr9_-_83040061_83040223	1.80909	NHLH1,2.p2	AK002970|Hmgn3|94353|high mobility group nucleosomal binding domain 3	BC005693|Hmgn3|94353|high mobility group nucleosomal binding domain 3	AK003272|Hmgn3|94353|high mobility group nucleosomal binding domain 3	AK153223|Hmgn3|94353|high mobility group nucleosomal binding domain 3	NM_026122|Hmgn3|94353|high mobility group nucleosomal binding domain 3	NM_175074|Hmgn3|94353|high mobility group nucleosomal binding domain 3
mm9_v1_chr1_+_20880688_20880689	1.80766	NHLH1,2.p2	AK048045|Paqr8|74229|progestin and adipoQ receptor family member VIII	AY424297|Paqr8|74229|progestin and adipoQ receptor family member VIII
mm9_v1_chr14_+_33669941_33669986	1.80504	NHLH1,2.p2	AK053685|E130203B14Rik|320736|RIKEN cDNA E130203B14 gene	NM_178791|E130203B14Rik|320736|RIKEN cDNA E130203B14 gene	BC107254|E130203B14Rik|320736|RIKEN cDNA E130203B14 gene	BC153828|E130203B14Rik|320736|RIKEN cDNA E130203B14 gene	BC125012|E130203B14Rik|320736|RIKEN cDNA E130203B14 gene	AK033244|E130203B14Rik|320736|RIKEN cDNA E130203B14 gene
mm9_v1_chr2_+_157740281_157740500	1.80488	NHLH1,2.p2	NM_198627|Vstm2l|277432|V-set and transmembrane domain containing 2-like	BC058538|Vstm2l|277432|V-set and transmembrane domain containing 2-like
mm9_v1_chr12_+_75385267_75385319	1.80432	NHLH1,2.p2	AK007020|1700086L19Rik|74284|RIKEN cDNA 1700086L19 gene
mm9_v1_chr4_-_107973683_107973743	1.80276	NHLH1,2.p2	AK166278|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK148335|Zyg11b|414872|zyg-ll homolog B (C. elegans)	NM_001033634|Zyg11b|414872|zyg-ll homolog B (C. elegans)
mm9_v1_chr9_+_122481617_122481627	1.80097	NHLH1,2.p2	AK048438|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK049978|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK079255|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK084074|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK135014|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene
mm9_v1_chr12_+_114214654_114214807	1.79978	NHLH1,2.p2	NM_001145900|Btbd6|399566|BTB (POZ) domain containing 6	BC031195|Btbd6|399566|BTB (POZ) domain containing 6	NM_201646|Btbd6|399566|BTB (POZ) domain containing 6
mm9_v1_chr5_-_144031617_144031663	1.79654	NHLH1,2.p2	BC057078|Zfp316|54201|zinc finger protein 316
mm9_v1_chr1_+_20880692_20880724	1.79635	NHLH1,2.p2	AK147376|Paqr8|74229|progestin and adipoQ receptor family member VIII	BC059813|Paqr8|74229|progestin and adipoQ receptor family member VIII	NM_028829|Paqr8|74229|progestin and adipoQ receptor family member VIII
mm9_v1_chr17_+_56109922_56110011	1.79597	NHLH1,2.p2	AK164639|Shd|20420|src homology 2 domain-containing transforming protein D	BC103798|Shd|20420|src homology 2 domain-containing transforming protein D
mm9_v1_chr7_-_54387695_54387755	1.79366	NHLH1,2.p2	BC057339|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5	BC051975|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5	AK038416|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5
mm9_v1_chr2_-_136213509_136213702	1.78858	NHLH1,2.p2	AK163530|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK032593|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK079080|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK013814|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	BC099417|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK077967|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	NM_172858|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7
mm9_v1_chr2_-_25978296_25978309	1.78758	NHLH1,2.p2	BC022103|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	AK002651|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr12_+_114252715_114252763	1.78622	NHLH1,2.p2	NM_001081170|Pacs2|217893|phosphofurin acidic cluster sorting protein 2	AK036581|Pacs2|217893|phosphofurin acidic cluster sorting protein 2	AK054000|Pacs2|217893|phosphofurin acidic cluster sorting protein 2
mm9_v1_chr11_+_70658271_70658306	1.78183	NHLH1,2.p2	BC060166|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	BC009814|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	BC080274|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AK019413|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AK151901|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AK137236|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1
mm9_v1_chr17_+_56125891_56125974	1.77649	NHLH1,2.p2	AK140132|Fsd1|240121|fibronectin type 3 and SPRY domain-containing protein	BC055106|Fsd1|240121|fibronectin type 3 and SPRY domain-containing protein	NM_183178|Fsd1|240121|fibronectin type 3 and SPRY domain-containing protein	AK144257|Fsd1|240121|fibronectin type 3 and SPRY domain-containing protein
mm9_v1_chr17_-_24987230_24987235	1.77592	NHLH1,2.p2	BC026949|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1
mm9_v1_chrX_-_35605626_35605657	1.77524	NHLH1,2.p2	NM_172930|Fam70a|245386|family with sequence similarity 70, member A
mm9_v1_chr1_-_39707702_39707818	1.77439	NHLH1,2.p2	BC034115|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK034501|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK043871|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK134713|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK046245|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK048589|Creg2|263764|cellular repressor of E1A-stimulated genes 2
mm9_v1_chr16_-_17406406_17406451	1.77284	NHLH1,2.p2	BC075629|Pi4ka|224020|phosphatidylinositol 4-kinase, catalytic, alpha polypeptide	NM_001001983|Pi4ka|224020|phosphatidylinositol 4-kinase, catalytic, alpha polypeptide
mm9_v1_chr17_-_25933989_25933999	1.76972	NHLH1,2.p2	AK087402|Metrn|70083|meteorin, glial cell differentiation regulator	NM_133719|Metrn|70083|meteorin, glial cell differentiation regulator
mm9_v1_chr10_-_6979627_6979716	1.76807	NHLH1,2.p2	AK082372|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c
mm9_v1_chr17_-_25934035_25934080	1.76708	NHLH1,2.p2	BC132177|Metrn|70083|meteorin, glial cell differentiation regulator
mm9_v1_chr6_+_90424727_90424917	1.76447	NHLH1,2.p2	AK185404|Klf15|66277|Kruppel-like factor 15	AK211444|Klf15|66277|Kruppel-like factor 15
mm9_v1_chr12_+_25516433_25516564	1.76123	NHLH1,2.p2	NM_001083341|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	NM_026037|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK076045|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK012931|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK031682|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK031824|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK033106|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK034873|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	BC025020|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK215458|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AB297383|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AB305046|Mboat2|67216|membrane bound O-acyltransferase domain containing 2
mm9_v1_chr14_-_45838944_45839057	1.76013	NHLH1,2.p2	BC052488|Txndc16|70561|thioredoxin domain containing 16	AK017582|Txndc16|70561|thioredoxin domain containing 16	AK034025|Txndc16|70561|thioredoxin domain containing 16
mm9_v1_chr17_-_66450782_66450906	1.75875	NHLH1,2.p2	AK159460|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	BC030946|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK146998|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	NM_028388|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK150404|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK151729|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK078351|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK013511|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK166539|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK169143|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2
mm9_v1_chr6_-_149050201_149050210	1.75546	NHLH1,2.p2	NM_177192|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr5_-_145927900_145927928	1.75359	NHLH1,2.p2	BC083097|Ptcd1|71799|pentatricopeptide repeat domain 1	AK171484|Ptcd1|71799|pentatricopeptide repeat domain 1	AK143877|Ptcd1|71799|pentatricopeptide repeat domain 1	AK150514|Ptcd1|71799|pentatricopeptide repeat domain 1
mm9_v1_chr6_-_124915441_124915537	1.75345	NHLH1,2.p2	AK013155|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	AK010726|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	AK010417|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	AK019122|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	AK008474|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm9_v1_chr1_-_95532192_95532205	1.7519	NHLH1,2.p2	BC029875|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr2_+_151931424_151931452	1.75096	NHLH1,2.p2	AK161066|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)	BC011325|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)
mm9_v1_chrX_-_154481213_154481299	1.74824	NHLH1,2.p2	
mm9_v1_chr1_+_20880690_20880691	1.74793	NHLH1,2.p2	AK031969|Paqr8|74229|progestin and adipoQ receptor family member VIII
mm9_v1_chr19_+_47314809_47314814	1.74419	NHLH1,2.p2	AK078529|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr12_+_45370113_45370142	1.7388	NHLH1,2.p2	NM_026164|Pnpla8|67452|patatin-like phospholipase domain containing 8
mm9_v1_chr5_+_23957994_23958094	1.73785	NHLH1,2.p2	AF459091|Agap3|213990|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	NM_139153|Agap3|213990|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	AB078345|Agap3|213990|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
mm9_v1_chr4_+_84851330_84851416	1.73277	NHLH1,2.p2	AK044370|Sh3gl2|20404|SH3-domain GRB2-like 2	BC018385|Sh3gl2|20404|SH3-domain GRB2-like 2	NM_019535|Sh3gl2|20404|SH3-domain GRB2-like 2	AK043424|Sh3gl2|20404|SH3-domain GRB2-like 2	AK139337|Sh3gl2|20404|SH3-domain GRB2-like 2	U58886|Sh3gl2|20404|SH3-domain GRB2-like 2
mm9_v1_chr5_-_122951791_122951906	1.73068	NHLH1,2.p2	BC054531|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	BC054748|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AJ131821|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AJ223584|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr7_-_4610179_4610267	1.72968	NHLH1,2.p2	BC141039|Ppp6r1|243819|protein phosphatase 6, regulatory subunit 1
mm9_v1_chr19_-_47089605_47089678	1.72906	NHLH1,2.p2	AK162385|Nt5c2|76952|5'-nucleotidase, cytosolic II	NM_001164363|Nt5c2|76952|5'-nucleotidase, cytosolic II
mm9_v1_chr5_+_102194207_102194308	1.72635	NHLH1,2.p2	AF533367|Cds1|74596|CDP-diacylglycerol synthase 1
mm9_v1_chr11_-_71949222_71949327	1.72517	NHLH1,2.p2	AK147630|Pitpnm3|327958|PITPNM family member 3	AK039594|Pitpnm3|327958|PITPNM family member 3
mm9_v1_chr18_+_75165496_75165648	1.72449	NHLH1,2.p2	AK077642|BC031181|407819|cDNA sequence BC031181	BC016084|BC031181|407819|cDNA sequence BC031181	NM_001001181|BC031181|407819|cDNA sequence BC031181	AK131658|BC031181|407819|cDNA sequence BC031181	BC031181|BC031181|407819|cDNA sequence BC031181	BC027819|BC031181|407819|cDNA sequence BC031181	AK180483|BC031181|407819|cDNA sequence BC031181	AK187367|BC031181|407819|cDNA sequence BC031181
mm9_v1_chr1_+_78654399_78654472	1.72231	NHLH1,2.p2	AK161708|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_001001981|Utp14b|195434|UTP14, U3 small nucleolar ribonucleoprotein, homolog B (yeast)	NM_001033606|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_001136222|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_028817|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK012088|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK160839|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK166723|Acsl3|74205|acyl-CoA synthetase long-chain family member 3
mm9_v1_chr2_+_3035692_3035956	1.71875	NHLH1,2.p2	BC138175|Fam171a1|269233|family with sequence similarity 171, member A1	BC145171|Fam171a1|269233|family with sequence similarity 171, member A1	AK077831|Fam171a1|269233|family with sequence similarity 171, member A1
mm9_v1_chr7_+_57230683_57230719	1.71873	NHLH1,2.p2	AY622226|Nell1|338352|NEL-like 1 (chicken)	NM_001037906|Nell1|338352|NEL-like 1 (chicken)
mm9_v1_chr6_-_23789259_23789331	1.71554	NHLH1,2.p2	AK046596|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AK042634|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AB291949|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AK163203|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	NM_153163|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AB291948|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AB291950|Cadps2|320405|Ca2+-dependent activator protein for secretion 2
mm9_v1_chr12_+_117724182_117724212	1.7134	NHLH1,2.p2	NM_011215|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2	AK081267|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2	AK138655|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2	BC048570|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2
mm9_v1_chr11_+_50038815_50038936	1.7131	NHLH1,2.p2	AK155336|Mgat4b|103534|mannoside acetylglucosaminyltransferase 4, isoenzyme B	NM_145926|Mgat4b|103534|mannoside acetylglucosaminyltransferase 4, isoenzyme B
mm9_v1_chr12_-_68323528_68323535	1.7119	NHLH1,2.p2	AK034513|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2	AK137667|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2	NM_001193266|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2	NM_207010|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2
mm9_v1_chr16_+_93712151_93712182	1.71122	NHLH1,2.p2	NM_026700|Dopey2|70028|dopey family member 2	NM_027293|Dopey2|70028|dopey family member 2	AK147255|Dopey2|70028|dopey family member 2	AK164839|Dopey2|70028|dopey family member 2	AK156170|Dopey2|70028|dopey family member 2
mm9_v1_chr4_-_136438225_136438228	1.71041	NHLH1,2.p2	X16874|C1qb|12260|complement component 1, q subcomponent, beta polypeptide
mm9_v1_chr10_+_80720062_80720086	1.70916	NHLH1,2.p2	X89723|Matk|17179|megakaryocyte-associated tyrosine kinase	BC060086|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr17_-_36034316_36034327	1.70738	NHLH1,2.p2	NM_001033630|2310061I04Rik|69662|RIKEN cDNA 2310061I04 gene
mm9_v1_chr11_+_77275811_77275917	1.70643	NHLH1,2.p2	
mm9_v1_chr7_-_51751770_51751882	1.70539	NHLH1,2.p2	AY761096|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AY761098|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	BC020179|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK150499|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK171657|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK009801|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK160274|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK169010|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	NM_197991|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene
mm9_v1_chr4_-_15076093_15076277	1.7053	NHLH1,2.p2	AK039240|Necab1|69352|N-terminal EF-hand calcium binding protein 1	AK081951|Necab1|69352|N-terminal EF-hand calcium binding protein 1	AY278200|Necab1|69352|N-terminal EF-hand calcium binding protein 1	BC067055|Necab1|69352|N-terminal EF-hand calcium binding protein 1	NM_178617|Necab1|69352|N-terminal EF-hand calcium binding protein 1
mm9_v1_chr1_-_23929098_23929255	1.70461	NHLH1,2.p2	BC006946|Smap1|98366|stromal membrane-associated protein 1	NM_028534|Smap1|98366|stromal membrane-associated protein 1	BC100537|Smap1|98366|stromal membrane-associated protein 1
mm9_v1_chr2_-_102241053_102241195	1.70398	NHLH1,2.p2	AJ278191|Trim44|80985|tripartite motif-containing 44	NM_020267|Trim44|80985|tripartite motif-containing 44
mm9_v1_chr11_+_59319654_59319693	1.70343	NHLH1,2.p2	AK011602|4933439C10Rik|74476|RIKEN cDNA 4933439C10 gene
mm9_v1_chr1_-_95532227_95532238	1.70332	NHLH1,2.p2	BC052913|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr5_+_108796754_108796809	1.70307	NHLH1,2.p2	AK031816|Gm10419|100038441|predicted gene 10419
mm9_v1_chr14_+_104049453_104049469	1.7016	NHLH1,2.p2	BC079866|Slain1|105439|SLAIN motif family, member 1	NM_198014|Slain1|105439|SLAIN motif family, member 1
mm9_v1_chr11_-_61668486_61668601	1.69967	NHLH1,2.p2	AF145922|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	BC046778|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	BC053029|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK146620|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK122331|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK146893|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK148142|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	NM_013881|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)
mm9_v1_chr4_+_151560168_151560314	1.69896	NHLH1,2.p2	NM_001146057|Acot7|70025|acyl-CoA thioesterase 7	AB088411|Acot7|70025|acyl-CoA thioesterase 7
mm9_v1_chr17_+_7374435_7374635	1.69861	NHLH1,2.p2	BC055331|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	NM_011299|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	AK044173|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	BC043064|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	BC056946|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	BC051079|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	AK019881|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	AJ131021|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2
mm9_v1_chr17_+_8138805_8138869	1.69452	NHLH1,2.p2	BC054439|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)	BC085294|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)	AK007979|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)
mm9_v1_chr1_-_127808723_127808763	1.69431	NHLH1,2.p2	BC058599|Lypd1|72585|Ly6/Plaur domain containing 1
mm9_v1_chr15_+_103333554_103333728	1.6927	NHLH1,2.p2	L01695|Pde1b|18574|phosphodiesterase 1B, Ca2+-calmodulin dependent	NM_008800|Pde1b|18574|phosphodiesterase 1B, Ca2+-calmodulin dependent
mm9_v1_chr4_-_119165183_119165252	1.6904	NHLH1,2.p2	BC057371|Rimkla|194237|ribosomal modification protein rimK-like family member A	AK163360|Rimkla|194237|ribosomal modification protein rimK-like family member A	AK047164|Rimkla|194237|ribosomal modification protein rimK-like family member A	NM_177572|Rimkla|194237|ribosomal modification protein rimK-like family member A
mm9_v1_chr14_+_119254202_119254218	1.69037	NHLH1,2.p2	AF124425|Cldn10|58187|claudin 10
mm9_v1_chr3_+_117278559_117278594	1.68773	NHLH1,2.p2	AY512657|4833424O15Rik|75769|RIKEN cDNA 4833424O15 gene
mm9_v1_chr5_+_67067359_67067456	1.68725	NHLH1,2.p2	NM_011670|Uchl1|22223|ubiquitin carboxy-terminal hydrolase L1
mm9_v1_chr15_-_37721754_37721786	1.68712	NHLH1,2.p2	NM_001170866|Ncald|52589|neurocalcin delta
mm9_v1_chr1_-_159342351_159342384	1.68532	NHLH1,2.p2	AK086812|Rasal2|226525|RAS protein activator like 2
mm9_v1_chr10_+_79256298_79256486	1.68465	NHLH1,2.p2	AK082163|Palm|18483|paralemmin	NM_001161747|Palm|18483|paralemmin	NM_023128|Palm|18483|paralemmin	AK162411|Palm|18483|paralemmin	BC015297|Palm|18483|paralemmin	Y14771|Palm|18483|paralemmin	AK133733|Palm|18483|paralemmin	AK037044|Palm|18483|paralemmin
mm9_v1_chr5_+_43625194_43625217	1.68334	NHLH1,2.p2	AK042065|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2	AB100307|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2	BC107349|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2	BC107350|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2
mm9_v1_chr5_+_33361571_33361768	1.68313	NHLH1,2.p2	AK077596|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	AK168520|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	AK169035|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	AK166922|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	AK169189|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	BC008187|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	U57311|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	AK187348|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	AK187410|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm9_v1_chr2_+_151931465_151931476	1.68216	NHLH1,2.p2	AK089976|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)	AK159226|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)	NM_029688|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)	AK159613|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)	AK007296|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)
mm9_v1_chr17_-_27702625_27702715	1.68168	NHLH1,2.p2	BC028464|AI413582|106672|expressed sequence AI413582	AK131681|AI413582|106672|expressed sequence AI413582	AK131593|AI413582|106672|expressed sequence AI413582	NM_001002895|AI413582|106672|expressed sequence AI413582
mm9_v1_chr13_-_86186317_86186413	1.68074	NHLH1,2.p2	X52940|Cox7c|12867|cytochrome c oxidase, subunit VIIc	AK027989|Cox7c|12867|cytochrome c oxidase, subunit VIIc	AK002494|Cox7c|12867|cytochrome c oxidase, subunit VIIc	AK153444|Cox7c|12867|cytochrome c oxidase, subunit VIIc	BC086792|Cox7c|12867|cytochrome c oxidase, subunit VIIc	BC010772|Cox7c|12867|cytochrome c oxidase, subunit VIIc	AK168077|Cox7c|12867|cytochrome c oxidase, subunit VIIc	AK131871|Cox7c|12867|cytochrome c oxidase, subunit VIIc	NM_007749|Cox7c|12867|cytochrome c oxidase, subunit VIIc
mm9_v1_chr8_+_3587675_3587681	1.68063	NHLH1,2.p2	AK081728|2310057J16Rik|69697|RIKEN cDNA 2310057J16 gene
mm9_v1_chr4_+_104830022_104830255	1.67931	NHLH1,2.p2	AK160056|Ppap2b|67916|phosphatidic acid phosphatase type 2B	AK076183|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr1_-_52784161_52784228	1.67758	NHLH1,2.p2	AK035995|Mfsd6|98682|major facilitator superfamily domain containing 6	NM_133829|Mfsd6|98682|major facilitator superfamily domain containing 6	NM_178081|Mfsd6|98682|major facilitator superfamily domain containing 6	AK171946|Mfsd6|98682|major facilitator superfamily domain containing 6
mm9_v1_chrX_+_45976916_45976963	1.67731	NHLH1,2.p2	AK051145|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AK148277|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm9_v1_chr2_-_131178551_131178627	1.67718	NHLH1,2.p2	BC096529|Rnf24|51902|ring finger protein 24	AK154093|Rnf24|51902|ring finger protein 24	AK048813|Rnf24|51902|ring finger protein 24	AK015699|Rnf24|51902|ring finger protein 24	AK089207|Rnf24|51902|ring finger protein 24	AK083665|Rnf24|51902|ring finger protein 24	NM_178607|Rnf24|51902|ring finger protein 24
mm9_v1_chr5_-_123183255_123183351	1.67631	NHLH1,2.p2	AK050846|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chr2_+_181255209_181255262	1.67493	NHLH1,2.p2	NM_016775|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK083584|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK007879|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK029006|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK032373|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	BC018231|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5
mm9_v1_chr19_-_7557678_7557684	1.67453	NHLH1,2.p2	BC036717|Rtn3|20168|reticulon 3	BC005478|Rtn3|20168|reticulon 3
mm9_v1_chrX_+_109714134_109714134	1.6713	NHLH1,2.p2	AK038956|Zfp711|245595|zinc finger protein 711	NM_177747|Zfp711|245595|zinc finger protein 711
mm9_v1_chr9_-_64101138_64101232	1.67083	NHLH1,2.p2	L02526|Map2k1|26395|mitogen-activated protein kinase kinase 1	BC054754|Map2k1|26395|mitogen-activated protein kinase kinase 1	BC051137|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr2_+_25356320_25356408	1.66994	NHLH1,2.p2	AF176520|Fbxw5|30839|F-box and WD-40 domain protein 5	BC010776|Fbxw5|30839|F-box and WD-40 domain protein 5	AK154911|Fbxw5|30839|F-box and WD-40 domain protein 5
mm9_v1_chr6_-_124915545_124915560	1.66826	NHLH1,2.p2	NM_001164089|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm9_v1_chr1_-_163181313_163181346	1.6682	NHLH1,2.p2	AK157820|Prdx6|11758|peroxiredoxin 6	Y12883|Prdx6|11758|peroxiredoxin 6
mm9_v1_chr19_-_7054901_7054955	1.66279	NHLH1,2.p2	BC031824|Fkbp2|14227|FK506 binding protein 2	BC053692|Fkbp2|14227|FK506 binding protein 2	AK144284|Fkbp2|14227|FK506 binding protein 2	AK165394|Fkbp2|14227|FK506 binding protein 2	NM_008020|Fkbp2|14227|FK506 binding protein 2	NM_001166368|Fkbp2|14227|FK506 binding protein 2
mm9_v1_chr10_-_126648509_126648683	1.66266	NHLH1,2.p2	BC021383|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AB054591|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK148299|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK140079|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	NM_054097|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
mm9_v1_chr5_-_144670646_144670709	1.65737	NHLH1,2.p2	BC026958|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	BC024410|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	BC026972|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	BC024480|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	NM_001172146|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	NM_146165|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2
mm9_v1_chr7_+_148748077_148748100	1.65703	NHLH1,2.p2	NM_007459|Ap2a2|11772|adaptor protein complex AP-2, alpha 2 subunit
mm9_v1_chr14_-_70205438_70205471	1.65667	NHLH1,2.p2	AK038196|Rhobtb2|246710|Rho-related BTB domain containing 2
mm9_v1_chr11_+_62944973_62945074	1.6565	NHLH1,2.p2	NM_008885|Pmp22|18858|peripheral myelin protein 22	M32240|Pmp22|18858|peripheral myelin protein 22	BC010765|Pmp22|18858|peripheral myelin protein 22	AK076005|Pmp22|18858|peripheral myelin protein 22	AK171745|Pmp22|18858|peripheral myelin protein 22
mm9_v1_chr11_-_69615126_69615217	1.65409	NHLH1,2.p2	NM_010198|Fgf11|14166|fibroblast growth factor 11	U66203|Fgf11|14166|fibroblast growth factor 11	BC066859|Fgf11|14166|fibroblast growth factor 11
mm9_v1_chr5_+_145306751_145306864	1.64821	NHLH1,2.p2	AK134806|Nptx2|53324|neuronal pentraxin 2	NM_016789|Nptx2|53324|neuronal pentraxin 2	BC026054|Nptx2|53324|neuronal pentraxin 2	AF049124|Nptx2|53324|neuronal pentraxin 2
mm9_v1_chr11_+_87405628_87405720	1.64807	NHLH1,2.p2	AF262986|Mtmr4|170749|myotubularin related protein 4	NM_133215|Mtmr4|170749|myotubularin related protein 4	BC058091|Mtmr4|170749|myotubularin related protein 4	BC058364|Mtmr4|170749|myotubularin related protein 4
mm9_v1_chr19_+_36629213_36629269	1.64663	NHLH1,2.p2	AK029549|Hectd2|226098|HECT domain containing 2
mm9_v1_chr12_+_109661287_109661388	1.64457	NHLH1,2.p2	AK044662|Eml1|68519|echinoderm microtubule associated protein like 1	BC079582|Eml1|68519|echinoderm microtubule associated protein like 1
mm9_v1_chr14_+_70977443_70977712	1.6443	NHLH1,2.p2	AK137014|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK089446|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	NM_153136|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK155086|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK157937|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK145997|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18
mm9_v1_chr2_-_25978328_25978339	1.64285	NHLH1,2.p2	AK147293|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	NM_026495|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr5_-_104340164_104340287	1.6397	NHLH1,2.p2	AK034618|Klhl8|246293|kelch-like 8 (Drosophila)	AK031028|Klhl8|246293|kelch-like 8 (Drosophila)	NM_178741|Klhl8|246293|kelch-like 8 (Drosophila)
mm9_v1_chr11_-_3813644_3813898	1.6373	NHLH1,2.p2	BC020181|Slc35e4|103710|solute carrier family 35, member E4	BC095957|Slc35e4|103710|solute carrier family 35, member E4
mm9_v1_chr12_+_70397751_70397780	1.63726	NHLH1,2.p2	AK009481|Klhdc2|69554|kelch domain containing 2
mm9_v1_chr15_+_12047769_12048008	1.6317	NHLH1,2.p2	BC094220|Zfr|22763|zinc finger RNA binding protein
mm9_v1_chr6_-_82889694_82889743	1.63127	NHLH1,2.p2	AB021291|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC057048|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC090625|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK047067|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC094567|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK035993|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK143196|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	NM_001113481|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	NM_011350|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm9_v1_chr8_-_110112368_110112383	1.62803	NHLH1,2.p2	NM_010817|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
mm9_v1_chr5_-_24107718_24107834	1.62569	NHLH1,2.p2	BC060525|Smarcd3|66993|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	AK005094|Smarcd3|66993|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	AK158019|Smarcd3|66993|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	NM_025891|Smarcd3|66993|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	AK019064|Smarcd3|66993|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
mm9_v1_chr3_-_107261815_107261829	1.62291	NHLH1,2.p2	BC024837|Kcnc4|99738|potassium voltage gated channel, Shaw-related subfamily, member 4	NM_145922|Kcnc4|99738|potassium voltage gated channel, Shaw-related subfamily, member 4
mm9_v1_chrX_-_12338914_12338976	1.62277	NHLH1,2.p2	AK163306|Med14|26896|mediator complex subunit 14	AK084044|Med14|26896|mediator complex subunit 14
mm9_v1_chr2_-_91550688_91550738	1.62134	NHLH1,2.p2	BC023673|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK163962|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	BC023712|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	BC033419|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK149672|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK171440|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	BC016669|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	NM_145528|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK154470|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK171206|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)
mm9_v1_chr18_-_61867246_61867319	1.62092	NHLH1,2.p2	BC060677|Pcyox1l|240334|prenylcysteine oxidase 1 like	AK050006|Pcyox1l|240334|prenylcysteine oxidase 1 like	NM_172832|Pcyox1l|240334|prenylcysteine oxidase 1 like
mm9_v1_chr9_-_62384483_62384602	1.62049	NHLH1,2.p2	BC062649|Coro2b|235431|coronin, actin binding protein, 2B
mm9_v1_chr11_+_100442831_100442963	1.62032	NHLH1,2.p2	AK217119|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr9_+_59598963_59599005	1.6184	NHLH1,2.p2	NM_173018|Myo9a|270163|myosin IXa	AK048681|Myo9a|270163|myosin IXa
mm9_v1_chr16_+_90386629_90386722	1.61537	NHLH1,2.p2	AF167987|Hunk|26559|hormonally upregulated Neu-associated kinase	AF055919|Hunk|26559|hormonally upregulated Neu-associated kinase	NM_015755|Hunk|26559|hormonally upregulated Neu-associated kinase	AK144639|Hunk|26559|hormonally upregulated Neu-associated kinase
mm9_v1_chr18_+_45428413_45428658	1.61375	NHLH1,2.p2	AK076494|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK033158|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr8_+_86424565_86424613	1.61108	NHLH1,2.p2	BC085138|Lphn1|330814|latrophilin 1
mm9_v1_chr5_-_123183537_123183571	1.60735	NHLH1,2.p2	AK213252|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chr5_+_137384005_137384101	1.60559	NHLH1,2.p2	AK160464|Rabl5|67286|RAB, member of RAS oncogene family-like 5	BC009150|Rabl5|67286|RAB, member of RAS oncogene family-like 5	NM_026073|Rabl5|67286|RAB, member of RAS oncogene family-like 5	AK005820|Rabl5|67286|RAB, member of RAS oncogene family-like 5
mm9_v1_chr15_-_88953516_88953579	1.60461	NHLH1,2.p2	AK052441|Tubgcp6|328580|tubulin, gamma complex associated protein 6	AK129420|Tubgcp6|328580|tubulin, gamma complex associated protein 6	NM_001163319|Tubgcp6|328580|tubulin, gamma complex associated protein 6
mm9_v1_chr2_+_35516774_35517011	1.59922	NHLH1,2.p2	AY305656|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr18_+_53405363_53405427	1.59045	NHLH1,2.p2	AK012711|Snx24|69226|sorting nexing 24	AK017610|Snx24|69226|sorting nexing 24
mm9_v1_chr18_+_38456364_38456458	1.59003	NHLH1,2.p2	AK011316|Rnf14|56736|ring finger protein 14	BC049079|Rnf14|56736|ring finger protein 14	NM_001164621|Rnf14|56736|ring finger protein 14
mm9_v1_chr5_-_73729789_73729885	1.58832	NHLH1,2.p2	BC044883|Ociad2|433904|OCIA domain containing 2	AK007617|Ociad2|433904|OCIA domain containing 2	NM_026950|Ociad2|433904|OCIA domain containing 2
mm9_v1_chr11_-_75609557_75609567	1.58686	NHLH1,2.p2	BC067030|Doc2b|13447|double C2, beta	NM_007873|Doc2b|13447|double C2, beta
mm9_v1_chr5_-_46030523_46030852	1.58555	NHLH1,2.p2	AK081567|Fam184b|58227|family with sequence similarity 184, member B	BC056379|Fam184b|58227|family with sequence similarity 184, member B	NM_021416|Fam184b|58227|family with sequence similarity 184, member B	AB257856|Fam184b|58227|family with sequence similarity 184, member B
mm9_v1_chr18_-_72510670_72510722	1.58544	NHLH1,2.p2	AK157715|Dcc|13176|deleted in colorectal carcinoma	AK090377|Dcc|13176|deleted in colorectal carcinoma	NM_007831|Dcc|13176|deleted in colorectal carcinoma
mm9_v1_chr1_-_194681914_194681945	1.58442	NHLH1,2.p2	BC060251|Sertad4|214791|SERTA domain containing 4	NM_198247|Sertad4|214791|SERTA domain containing 4
mm9_v1_chr3_-_119486136_119486235	1.58198	NHLH1,2.p2	AK207246|Ptbp2|56195|polypyrimidine tract binding protein 2	AF095718|Ptbp2|56195|polypyrimidine tract binding protein 2	BC010255|Ptbp2|56195|polypyrimidine tract binding protein 2	AK137348|Ptbp2|56195|polypyrimidine tract binding protein 2	AK050624|Ptbp2|56195|polypyrimidine tract binding protein 2	AK050650|Ptbp2|56195|polypyrimidine tract binding protein 2	AK041655|Ptbp2|56195|polypyrimidine tract binding protein 2	AK015056|Ptbp2|56195|polypyrimidine tract binding protein 2
mm9_v1_chr8_+_86496844_86496952	1.57963	NHLH1,2.p2	NM_008854|Prkaca|18747|protein kinase, cAMP dependent, catalytic, alpha	BC003238|Prkaca|18747|protein kinase, cAMP dependent, catalytic, alpha	BC054834|Prkaca|18747|protein kinase, cAMP dependent, catalytic, alpha	M12303|Prkaca|18747|protein kinase, cAMP dependent, catalytic, alpha
mm9_v1_chr1_-_137268058_137268336	1.57782	NHLH1,2.p2	AK199485|Shisa4|77552|shisa homolog 4 (Xenopus laevis)	AK212908|Shisa4|77552|shisa homolog 4 (Xenopus laevis)
mm9_v1_chr11_-_29147217_29147312	1.57416	NHLH1,2.p2	BC005731|Ccdc104|216618|coiled-coil domain containing 104	AK075858|Ccdc104|216618|coiled-coil domain containing 104	NM_025740|Ccdc104|216618|coiled-coil domain containing 104	AK010468|Ccdc104|216618|coiled-coil domain containing 104	AK016479|Ccdc104|216618|coiled-coil domain containing 104
mm9_v1_chr2_+_155102040_155102281	1.57181	NHLH1,2.p2	AK015020|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha	NM_025735|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha	AK003122|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha	AK003716|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha	BC010596|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha
mm9_v1_chr5_-_107125618_107125653	1.57037	NHLH1,2.p2	AK144865|Zfp644|52397|zinc finger protein 644
mm9_v1_chr6_+_110595586_110595619	1.56482	NHLH1,2.p2	BC080315|Grm7|108073|glutamate receptor, metabotropic 7	NM_177328|Grm7|108073|glutamate receptor, metabotropic 7
mm9_v1_chr16_+_38089086_38089192	1.56338	NHLH1,2.p2	AB066114|Gsk3b|56637|glycogen synthase kinase 3 beta	NM_019827|Gsk3b|56637|glycogen synthase kinase 3 beta	BC060743|Gsk3b|56637|glycogen synthase kinase 3 beta
mm9_v1_chr11_-_86570918_86571097	1.56223	NHLH1,2.p2	AK158438|Cltc|67300|clathrin, heavy polypeptide (Hc)	BC079897|Cltc|67300|clathrin, heavy polypeptide (Hc)	NM_001003908|Cltc|67300|clathrin, heavy polypeptide (Hc)	AK171732|Cltc|67300|clathrin, heavy polypeptide (Hc)	AK156869|Cltc|67300|clathrin, heavy polypeptide (Hc)
mm9_v1_chr18_+_53405310_53405315	1.56053	NHLH1,2.p2	BC051168|Snx24|69226|sorting nexing 24	NM_029394|Snx24|69226|sorting nexing 24
mm9_v1_chr15_-_93426312_93426402	1.5602	NHLH1,2.p2	AK153711|Prickle1|106042|prickle homolog 1 (Drosophila)	NM_001033217|Prickle1|106042|prickle homolog 1 (Drosophila)
mm9_v1_chr12_+_70397667_70397700	1.55982	NHLH1,2.p2	AK078408|Klhdc2|69554|kelch domain containing 2	NM_027117|Klhdc2|69554|kelch domain containing 2
mm9_v1_chr11_+_22872016_22872058	1.55851	NHLH1,2.p2	NM_011663|Zrsr1|22183|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	D17407|Zrsr1|22183|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	S69507|Zrsr1|22183|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1
mm9_v1_chr10_+_4424140_4424212	1.55728	NHLH1,2.p2	AK030492|Rgs17|56533|regulator of G-protein signaling 17	NM_001161822|Rgs17|56533|regulator of G-protein signaling 17	NM_019958|Rgs17|56533|regulator of G-protein signaling 17	AK018279|Rgs17|56533|regulator of G-protein signaling 17	AK045770|Rgs17|56533|regulator of G-protein signaling 17	AK046009|Rgs17|56533|regulator of G-protein signaling 17	AK078745|Rgs17|56533|regulator of G-protein signaling 17	AK163188|Rgs17|56533|regulator of G-protein signaling 17	AF191555|Rgs17|56533|regulator of G-protein signaling 17	BC064782|Rgs17|56533|regulator of G-protein signaling 17
mm9_v1_chr8_-_126384108_126384108	1.55608	NHLH1,2.p2	BC036300|1700054N08Rik|73420|RIKEN cDNA 1700054N08 gene	NM_028536|1700054N08Rik|73420|RIKEN cDNA 1700054N08 gene
mm9_v1_chr12_+_101202708_101202902	1.55504	NHLH1,2.p2	NM_001164426|Kcnk13|217826|potassium channel, subfamily K, member 13	NM_001164427|Kcnk13|217826|potassium channel, subfamily K, member 13	NM_146037|Kcnk13|217826|potassium channel, subfamily K, member 13	AK158645|Kcnk13|217826|potassium channel, subfamily K, member 13	AK155396|Kcnk13|217826|potassium channel, subfamily K, member 13	AK089394|Kcnk13|217826|potassium channel, subfamily K, member 13	AK134730|Kcnk13|217826|potassium channel, subfamily K, member 13	AK170504|Kcnk13|217826|potassium channel, subfamily K, member 13
mm9_v1_chr17_+_26339936_26339946	1.5547	NHLH1,2.p2	AK039314|Rgs11|50782|regulator of G-protein signaling 11	BC037655|Rgs11|50782|regulator of G-protein signaling 11
mm9_v1_chr2_+_181100083_181100251	1.55288	NHLH1,2.p2	AK159801|Zgpat|229007|zinc finger, CCCH-type with G patch domain	NM_001048148|Zgpat|229007|zinc finger, CCCH-type with G patch domain	AK049764|Zgpat|229007|zinc finger, CCCH-type with G patch domain	BC021513|Zgpat|229007|zinc finger, CCCH-type with G patch domain	BC004646|Zgpat|229007|zinc finger, CCCH-type with G patch domain	BC027218|Zgpat|229007|zinc finger, CCCH-type with G patch domain	AK052236|Zgpat|229007|zinc finger, CCCH-type with G patch domain
mm9_v1_chrX_+_160346948_160347157	1.55181	NHLH1,2.p2	AK045558|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK047724|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK167690|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK053941|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK005223|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	BC046964|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	NM_026887|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK043776|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit
mm9_v1_chr19_+_56796861_56797043	1.54961	NHLH1,2.p2	NM_007419|Adrb1|11554|adrenergic receptor, beta 1	AK018378|Adrb1|11554|adrenergic receptor, beta 1
mm9_v1_chr4_-_149148173_149148404	1.5485	NHLH1,2.p2	AK017628|Slc25a33|70556|solute carrier family 25, member 33	BC011293|Slc25a33|70556|solute carrier family 25, member 33	AK157423|Slc25a33|70556|solute carrier family 25, member 33	NM_027460|Slc25a33|70556|solute carrier family 25, member 33
mm9_v1_chr2_+_179777187_179777250	1.54739	NHLH1,2.p2	NM_178750|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1	BC054730|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1	AK133944|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1
mm9_v1_chr19_+_3851856_3851913	1.54593	NHLH1,2.p2	BC056758|Chka|12660|choline kinase alpha	AB011002|Chka|12660|choline kinase alpha
mm9_v1_chr6_+_72047563_72047686	1.54517	NHLH1,2.p2	AK165726|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	NM_001035228|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	NM_011375|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AF119416|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AK159000|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AK012961|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AB018048|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	BC138557|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	BC138559|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
mm9_v1_chr1_-_192735594_192735689	1.54516	NHLH1,2.p2	AK044809|Rps6kc1|320119|ribosomal protein S6 kinase polypeptide 1	AK149858|Rps6kc1|320119|ribosomal protein S6 kinase polypeptide 1	AK030313|Rps6kc1|320119|ribosomal protein S6 kinase polypeptide 1	NM_178775|Rps6kc1|320119|ribosomal protein S6 kinase polypeptide 1
mm9_v1_chr3_-_88636411_88636470	1.54496	NHLH1,2.p2	AK141588|1500004A13Rik|319830|RIKEN cDNA 1500004A13 gene	AK014401|1500004A13Rik|319830|RIKEN cDNA 1500004A13 gene	AK033977|1500004A13Rik|319830|RIKEN cDNA 1500004A13 gene	AK078122|1500004A13Rik|319830|RIKEN cDNA 1500004A13 gene
mm9_v1_chr2_+_156546694_156546736	1.54425	NHLH1,2.p2	NM_001042488|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr2_-_130867226_130867250	1.54212	NHLH1,2.p2	AB041809|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4
mm9_v1_chr12_+_70397702_70397722	1.5414	NHLH1,2.p2	AK082528|Klhdc2|69554|kelch domain containing 2	AY513272|Klhdc2|69554|kelch domain containing 2
mm9_v1_chr6_-_82889660_82889681	1.54136	NHLH1,2.p2	AK158292|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC139232|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm9_v1_chr5_+_110973321_110973404	1.5412	NHLH1,2.p2	NM_198306|Galnt9|231605|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	AK032568|Galnt9|231605|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9
mm9_v1_chr11_+_109511476_109511595	1.54098	NHLH1,2.p2	AK158562|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha
mm9_v1_chr16_+_38742446_38742523	1.54042	NHLH1,2.p2	AK041692|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK136637|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4
mm9_v1_chr17_-_25970305_25970305	1.53823	NHLH1,2.p2	BC027427|Stub1|56424|STIP1 homology and U-Box containing protein 1	NM_019719|Stub1|56424|STIP1 homology and U-Box containing protein 1
mm9_v1_chr11_-_93829556_93829648	1.53795	NHLH1,2.p2	AF033377|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in	AK034899|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in	M35970|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in	BC005629|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in	U85511|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in	AK136353|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in
mm9_v1_chr14_-_21871647_21871707	1.53644	NHLH1,2.p2	AF242857|Ap3m1|55946|adaptor-related protein complex 3, mu 1 subunit	NM_018829|Ap3m1|55946|adaptor-related protein complex 3, mu 1 subunit
mm9_v1_chr5_-_102498929_102498975	1.53635	NHLH1,2.p2	AK047077|Wdfy3|72145|WD repeat and FYVE domain containing 3	AY336569|Wdfy3|72145|WD repeat and FYVE domain containing 3	NM_172882|Wdfy3|72145|WD repeat and FYVE domain containing 3
mm9_v1_chr11_+_97223739_97223783	1.5311	NHLH1,2.p2	AK147580|Socs7|192157|suppressor of cytokine signaling 7	AK147650|Socs7|192157|suppressor of cytokine signaling 7
mm9_v1_chr5_+_135499346_135499452	1.52975	NHLH1,2.p2	BC100446|Stx1a|20907|syntaxin 1A (brain)	BC057892|Stx1a|20907|syntaxin 1A (brain)	D45208|Stx1a|20907|syntaxin 1A (brain)	NM_016801|Stx1a|20907|syntaxin 1A (brain)	BC047133|Stx1a|20907|syntaxin 1A (brain)
mm9_v1_chr15_-_98593505_98593647	1.52726	NHLH1,2.p2	D87900|Arf3|11842|ADP-ribosylation factor 3	BC014778|Arf3|11842|ADP-ribosylation factor 3	NM_007478|Arf3|11842|ADP-ribosylation factor 3	AK171354|Arf3|11842|ADP-ribosylation factor 3	BC024935|Arf3|11842|ADP-ribosylation factor 3	AK154948|Arf3|11842|ADP-ribosylation factor 3	AK165176|Arf3|11842|ADP-ribosylation factor 3	AK151296|Arf3|11842|ADP-ribosylation factor 3
mm9_v1_chr9_-_64101429_64101455	1.52693	NHLH1,2.p2	AK154793|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr6_-_72548335_72548408	1.52595	NHLH1,2.p2	AK049155|Elmod3|232089|ELMO/CED-12 domain containing 3	NM_144917|Elmod3|232089|ELMO/CED-12 domain containing 3	AK084010|Elmod3|232089|ELMO/CED-12 domain containing 3	AK164974|Elmod3|232089|ELMO/CED-12 domain containing 3
mm9_v1_chr17_+_56110138_56110224	1.52543	NHLH1,2.p2	BC052026|Shd|20420|src homology 2 domain-containing transforming protein D	BC079574|Shd|20420|src homology 2 domain-containing transforming protein D
mm9_v1_chr11_+_114529837_114529938	1.5217	NHLH1,2.p2	AB037665|Rpl38|67671|ribosomal protein L38	NM_001048057|Rpl38|67671|ribosomal protein L38	NM_023372|Rpl38|67671|ribosomal protein L38	AK002659|Rpl38|67671|ribosomal protein L38	AK010518|Rpl38|67671|ribosomal protein L38	AK012391|Rpl38|67671|ribosomal protein L38	BC055346|Rpl38|67671|ribosomal protein L38	BC034339|Rpl38|67671|ribosomal protein L38	AK010277|Rpl38|67671|ribosomal protein L38	AK151517|Rpl38|67671|ribosomal protein L38	BC047046|Rpl38|67671|ribosomal protein L38
mm9_v1_chr8_+_97501008_97501008	1.51854	NHLH1,2.p2	AF166382|Gpr56|14766|G protein-coupled receptor 56	NM_001198894|Gpr56|14766|G protein-coupled receptor 56
mm9_v1_chr7_-_72301384_72301483	1.51846	NHLH1,2.p2	NM_183087|Fam189a1|70638|family with sequence similarity 189, member A1
mm9_v1_chr4_-_25726753_25727001	1.51593	NHLH1,2.p2	AB015426|Fut9|14348|fucosyltransferase 9	BC116874|Fut9|14348|fucosyltransferase 9	BC116876|Fut9|14348|fucosyltransferase 9	AK047650|Fut9|14348|fucosyltransferase 9	AK163871|Fut9|14348|fucosyltransferase 9	AK036183|Fut9|14348|fucosyltransferase 9	AK043410|Fut9|14348|fucosyltransferase 9	AK049167|Fut9|14348|fucosyltransferase 9
mm9_v1_chr11_-_30119771_30119771	1.51396	NHLH1,2.p2	NM_175836|Spnb2|20742|spectrin beta 2
mm9_v1_chr19_-_58529766_58529841	1.51381	NHLH1,2.p2	BC044783|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	AK076171|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1
mm9_v1_chr1_+_171585621_171585677	1.51378	NHLH1,2.p2	AK004165|Rgs5|19737|regulator of G-protein signaling 5	AK028765|Rgs5|19737|regulator of G-protein signaling 5	AK030300|Rgs5|19737|regulator of G-protein signaling 5	AK044096|Rgs5|19737|regulator of G-protein signaling 5	AK054098|Rgs5|19737|regulator of G-protein signaling 5	NM_009063|Rgs5|19737|regulator of G-protein signaling 5	BC037683|Rgs5|19737|regulator of G-protein signaling 5	U67188|Rgs5|19737|regulator of G-protein signaling 5
mm9_v1_chrX_+_148578716_148578819	1.51376	NHLH1,2.p2	AB275281|Iqsec2|245666|IQ motif and Sec7 domain 2	NM_001114664|Iqsec2|245666|IQ motif and Sec7 domain 2	AY451401|Iqsec2|245666|IQ motif and Sec7 domain 2
mm9_v1_chr1_-_160286359_160286472	1.51264	NHLH1,2.p2	BC067038|Fam5b|240843|family with sequence similarity 5, member B	BC076572|Fam5b|240843|family with sequence similarity 5, member B	NM_207583|Fam5b|240843|family with sequence similarity 5, member B	AK032297|Fam5b|240843|family with sequence similarity 5, member B	AK047824|Fam5b|240843|family with sequence similarity 5, member B	AK122549|Fam5b|240843|family with sequence similarity 5, member B
mm9_v1_chr12_+_112997194_112997223	1.51187	NHLH1,2.p2	AK184188|Klc1|16593|kinesin light chain 1	AK207464|Klc1|16593|kinesin light chain 1	BC055744|Klc1|16593|kinesin light chain 1
mm9_v1_chr5_+_121098830_121098830	1.50942	NHLH1,2.p2	BC005418|Rasal1|19415|RAS protein activator like 1 (GAP1 like)	NM_013832|Rasal1|19415|RAS protein activator like 1 (GAP1 like)
mm9_v1_chr5_+_143178045_143178121	1.50854	NHLH1,2.p2	NM_146257|Slc29a4|243328|solute carrier family 29 (nucleoside transporters), member 4	BC025599|Slc29a4|243328|solute carrier family 29 (nucleoside transporters), member 4
mm9_v1_chr3_-_120965803_120965917	1.50474	NHLH1,2.p2	AK147601|Tmem56|99887|transmembrane protein 56
mm9_v1_chr1_+_94803538_94803618	1.50473	NHLH1,2.p2	AK163560|Dusp28|67446|dual specificity phosphatase 28	AK002934|Dusp28|67446|dual specificity phosphatase 28	NM_175118|Dusp28|67446|dual specificity phosphatase 28	BC119127|Dusp28|67446|dual specificity phosphatase 28	BC051598|Dusp28|67446|dual specificity phosphatase 28	AK088940|Dusp28|67446|dual specificity phosphatase 28
mm9_v1_chr7_-_29123775_29123801	1.50441	NHLH1,2.p2	AK146650|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)
mm9_v1_chr2_-_25463924_25464009	1.50365	NHLH1,2.p2	BC085507|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	NM_001024616|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC021476|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC020111|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK081440|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK171643|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC058585|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC023692|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC051138|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK045520|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK081397|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK157020|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK077311|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK143678|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene
mm9_v1_chr12_+_81619976_81620155	1.50312	NHLH1,2.p2	NM_001081421|Galntl1|108760|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1	AB045325|Galntl1|108760|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1	AK138883|Galntl1|108760|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1	AB175683|Galntl1|108760|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1
mm9_v1_chr11_-_50729643_50729683	1.50068	NHLH1,2.p2	BC057171|Zfp2|22678|zinc finger protein 2	AK042734|Zfp2|22678|zinc finger protein 2	AK141471|Zfp2|22678|zinc finger protein 2	BC089506|Zfp2|22678|zinc finger protein 2	AK131978|Zfp2|22678|zinc finger protein 2	NM_001044697|Zfp2|22678|zinc finger protein 2	NM_001044698|Zfp2|22678|zinc finger protein 2	NM_001044699|Zfp2|22678|zinc finger protein 2	NM_001044700|Zfp2|22678|zinc finger protein 2	AK036776|Zfp2|22678|zinc finger protein 2
mm9_v1_chr3_+_27081918_27081998	1.50031	NHLH1,2.p2	AK128968|Nceh1|320024|arylacetamide deacetylase-like 1	AK038691|Nceh1|320024|arylacetamide deacetylase-like 1	AK045363|Nceh1|320024|arylacetamide deacetylase-like 1	AK085767|Nceh1|320024|arylacetamide deacetylase-like 1	NM_178772|Nceh1|320024|arylacetamide deacetylase-like 1	AK135837|Nceh1|320024|arylacetamide deacetylase-like 1	BC082569|Nceh1|320024|arylacetamide deacetylase-like 1	AK173158|Nceh1|320024|arylacetamide deacetylase-like 1	AK034339|Nceh1|320024|arylacetamide deacetylase-like 1
mm9_v1_chr19_+_3851772_3851838	1.50005	NHLH1,2.p2	AK005057|Chka|12660|choline kinase alpha	NM_001025566|Chka|12660|choline kinase alpha	NM_013490|Chka|12660|choline kinase alpha	AK014174|Chka|12660|choline kinase alpha	BC060218|Chka|12660|choline kinase alpha	AK052056|Chka|12660|choline kinase alpha	AK053818|Chka|12660|choline kinase alpha	AK166465|Chka|12660|choline kinase alpha	AK166641|Chka|12660|choline kinase alpha
mm9_v1_chr17_-_7152972_7153124	1.49999	NHLH1,2.p2	BC110284|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)
mm9_v1_chr6_-_124915407_124915438	1.49954	NHLH1,2.p2	NM_012003|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm9_v1_chr11_+_59319892_59319945	1.49912	NHLH1,2.p2	BC099591|4933439C10Rik|74476|RIKEN cDNA 4933439C10 gene
mm9_v1_chr14_-_47407948_47408042	1.49841	NHLH1,2.p2	AK154479|Cnih|12793|cornichon homolog (Drosophila)	AK152432|Cnih|12793|cornichon homolog (Drosophila)	AK168154|Cnih|12793|cornichon homolog (Drosophila)	AK011200|Cnih|12793|cornichon homolog (Drosophila)	BC034868|Cnih|12793|cornichon homolog (Drosophila)	AK002293|Cnih|12793|cornichon homolog (Drosophila)	AF022811|Cnih|12793|cornichon homolog (Drosophila)	NM_009919|Cnih|12793|cornichon homolog (Drosophila)
mm9_v1_chr15_-_39775498_39775574	1.49554	NHLH1,2.p2	BC058345|Lrp12|239393|low density lipoprotein-related protein 12
mm9_v1_chr11_-_93829704_93829834	1.49253	NHLH1,2.p2	NM_008704|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in
mm9_v1_chr8_+_11758376_11758449	1.49239	NHLH1,2.p2	AF247654|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AF343877|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)
mm9_v1_chr18_+_43367236_43367350	1.48977	NHLH1,2.p2	AK042599|Stk32a|269019|serine/threonine kinase 32A	BC055002|Stk32a|269019|serine/threonine kinase 32A	AK044474|Stk32a|269019|serine/threonine kinase 32A	AK036266|Stk32a|269019|serine/threonine kinase 32A	NM_178749|Stk32a|269019|serine/threonine kinase 32A
mm9_v1_chr9_+_65524331_65524426	1.48889	NHLH1,2.p2	AK169243|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	NM_010952|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK143231|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK146074|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK160444|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK168853|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK168662|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	BC055442|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	BC083114|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AF057298|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	BC005477|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	BC110690|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene
mm9_v1_chr4_-_41586992_41587010	1.48878	NHLH1,2.p2	BC021944|Enho|69638|energy homeostasis associated
mm9_v1_chr3_+_146515369_146515388	1.48767	NHLH1,2.p2	AK014905|Ttll7|70892|tubulin tyrosine ligase-like family, member 7
mm9_v1_chr2_-_130867149_130867194	1.48722	NHLH1,2.p2	AK090192|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4
mm9_v1_chr10_-_30522912_30522956	1.48364	NHLH1,2.p2	NM_172495|Ncoa7|211329|nuclear receptor coactivator 7
mm9_v1_chr17_-_65962822_65962911	1.48285	NHLH1,2.p2	AF157497|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK003576|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK159582|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK168824|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK088132|Vapa|30960|vesicle-associated membrane protein, associated protein A	BC003866|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK167381|Vapa|30960|vesicle-associated membrane protein, associated protein A	NM_013933|Vapa|30960|vesicle-associated membrane protein, associated protein A
mm9_v1_chr6_-_124694973_124695025	1.48222	NHLH1,2.p2	BC022946|Atn1|13498|atrophin 1
mm9_v1_chr9_-_108363229_108363406	1.48177	NHLH1,2.p2	AK157991|Klhdc8b|78267|kelch domain containing 8B	AK087143|Klhdc8b|78267|kelch domain containing 8B	AK154428|Klhdc8b|78267|kelch domain containing 8B
mm9_v1_chrX_+_10294707_10294726	1.47992	NHLH1,2.p2	AK131619|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK014143|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm9_v1_chr8_+_93837422_93837472	1.47936	NHLH1,2.p2	NM_011936|Fto|26383|fat mass and obesity associated	AK049502|Fto|26383|fat mass and obesity associated	AK036677|Fto|26383|fat mass and obesity associated	AJ237917|Fto|26383|fat mass and obesity associated	AK088881|Fto|26383|fat mass and obesity associated	AK040866|Fto|26383|fat mass and obesity associated	AK045465|Fto|26383|fat mass and obesity associated	AK129437|Fto|26383|fat mass and obesity associated	BC057008|Fto|26383|fat mass and obesity associated	AK161060|Fto|26383|fat mass and obesity associated	AK046935|Fto|26383|fat mass and obesity associated	BC022222|Fto|26383|fat mass and obesity associated
mm9_v1_chr15_+_76080159_76080286	1.47594	NHLH1,2.p2	
mm9_v1_chr12_+_81745188_81745226	1.47361	NHLH1,2.p2	NM_026244|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9	AK090062|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9	AK080462|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9	BC072655|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9	AK008025|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9
mm9_v1_chr19_-_4989865_4989972	1.4734	NHLH1,2.p2	AB049835|Npas4|225872|neuronal PAS domain protein 4	BC129861|Npas4|225872|neuronal PAS domain protein 4	AK032607|Npas4|225872|neuronal PAS domain protein 4	NM_153553|Npas4|225872|neuronal PAS domain protein 4
mm9_v1_chr15_+_54402988_54403054	1.4698	NHLH1,2.p2	AK035986|Mal2|105853|mal, T-cell differentiation protein 2	BC113154|Mal2|105853|mal, T-cell differentiation protein 2
mm9_v1_chr12_+_83271002_83271165	1.46882	NHLH1,2.p2	NM_001167983|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1	BC058681|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1	AK171876|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1
mm9_v1_chr7_-_7251473_7251490	1.46874	NHLH1,2.p2	AK133759|Clcn4-2|12727|chloride channel 4-2	AK160325|Clcn4-2|12727|chloride channel 4-2
mm9_v1_chr5_+_73872293_73872293	1.46853	NHLH1,2.p2	AK076991|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_001190734|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr1_+_37947371_37947412	1.46709	NHLH1,2.p2	AK009074|Mrpl30|107734|mitochondrial ribosomal protein L30	AK089015|Mrpl30|107734|mitochondrial ribosomal protein L30	NM_027098|Mrpl30|107734|mitochondrial ribosomal protein L30
mm9_v1_chr5_-_31247757_31247970	1.46544	NHLH1,2.p2	AK003420|Cgref1|68567|cell growth regulator with EF hand domain 1	NM_001160149|Cgref1|68567|cell growth regulator with EF hand domain 1	BC023116|Cgref1|68567|cell growth regulator with EF hand domain 1	NM_026770|Cgref1|68567|cell growth regulator with EF hand domain 1
mm9_v1_chr3_-_89049756_89049818	1.4633	NHLH1,2.p2	BC082299|Trim46|360213|tripartite motif-containing 46	NM_183037|Trim46|360213|tripartite motif-containing 46
mm9_v1_chr17_+_8138441_8138546	1.46285	NHLH1,2.p2	NM_025789|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)	AK148230|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)	BC057649|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)	BC022760|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)	BC110424|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)
mm9_v1_chr1_-_95532278_95532320	1.46047	NHLH1,2.p2	BC071218|Stk25|59041|serine/threonine kinase 25 (yeast)	NM_021537|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr9_-_20682520_20682531	1.46011	NHLH1,2.p2	AK018113|Angptl6|70726|angiopoietin-like 6
mm9_v1_chr9_-_36954858_36954932	1.45993	NHLH1,2.p2	NM_148950|Pknox2|208076|Pbx/knotted 1 homeobox 2
mm9_v1_chr11_-_76660476_76660569	1.45874	NHLH1,2.p2	AK142583|Cpd|12874|carboxypeptidase D	AK134907|Cpd|12874|carboxypeptidase D	AK137737|Cpd|12874|carboxypeptidase D	D85391|Cpd|12874|carboxypeptidase D	NM_007754|Cpd|12874|carboxypeptidase D
mm9_v1_chr13_+_25035020_25035080	1.45797	NHLH1,2.p2	NM_008156|Gpld1|14756|glycosylphosphatidylinositol specific phospholipase D1	AF050666|Gpld1|14756|glycosylphosphatidylinositol specific phospholipase D1
mm9_v1_chrX_+_97972559_97972657	1.45624	NHLH1,2.p2	NM_001177780|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK159655|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK167365|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK148464|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr6_+_91124214_91124275	1.45527	NHLH1,2.p2	AK209341|Hdac11|232232|histone deacetylase 11
mm9_v1_chr15_+_99125666_99125690	1.45462	NHLH1,2.p2	BC058389|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	BC082994|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	AK140075|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	AK164947|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)
mm9_v1_chrX_+_45976982_45977308	1.45442	NHLH1,2.p2	NM_001166450|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	BC048692|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AF155812|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AF155813|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm9_v1_chr3_-_33041993_33042007	1.45405	NHLH1,2.p2	AK042235|Pex5l|58869|peroxisomal biogenesis factor 5-like	AK083141|Pex5l|58869|peroxisomal biogenesis factor 5-like	NM_001163516|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr10_+_5151833_5151833	1.45356	NHLH1,2.p2	AK041626|Syne1|64009|synaptic nuclear envelope 1	NM_001079686|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr9_+_21397165_21397375	1.45184	NHLH1,2.p2	BC057071|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	NM_178619|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	AK030602|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	AK028799|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene
mm9_v1_chr2_-_167014273_167014317	1.44338	NHLH1,2.p2	BC031776|Kcnb1|16500|potassium voltage gated channel, Shab-related subfamily, member 1	BC051422|Kcnb1|16500|potassium voltage gated channel, Shab-related subfamily, member 1	BC061501|Kcnb1|16500|potassium voltage gated channel, Shab-related subfamily, member 1	NM_008420|Kcnb1|16500|potassium voltage gated channel, Shab-related subfamily, member 1	DQ646377|Kcnb1|16500|potassium voltage gated channel, Shab-related subfamily, member 1
mm9_v1_chr19_+_23215817_23215902	1.44284	NHLH1,2.p2	BC138724|Klf9|16601|Kruppel-like factor 9	BC138725|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr6_-_86347065_86347084	1.44168	NHLH1,2.p2	AK173058|Pcyox1|66881|prenylcysteine oxidase 1
mm9_v1_chr13_-_52626065_52626204	1.44139	NHLH1,2.p2	AK136096|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	AK136101|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	NM_001024474|Diras2|68203|DIRAS family, GTP-binding RAS-like 2
mm9_v1_chr11_+_70577932_70578003	1.44033	NHLH1,2.p2	AK045753|Zfp3|193043|zinc finger protein 3	NM_177565|Zfp3|193043|zinc finger protein 3	BC096463|Zfp3|193043|zinc finger protein 3
mm9_v1_chr2_+_148221069_148221097	1.44021	NHLH1,2.p2	AK051189|Sstr4|20608|somatostatin receptor 4
mm9_v1_chr1_-_95532270_95532276	1.43908	NHLH1,2.p2	AK148041|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr15_-_98783909_98783984	1.43899	NHLH1,2.p2	M13445|Tuba1a|22142|tubulin, alpha 1A	NM_011653|Tuba1a|22142|tubulin, alpha 1A	AK077529|Tuba1a|22142|tubulin, alpha 1A	BC056169|Tuba1a|22142|tubulin, alpha 1A	BC083344|Tuba1a|22142|tubulin, alpha 1A	BC083343|Tuba1a|22142|tubulin, alpha 1A	BC085256|Tuba1a|22142|tubulin, alpha 1A	BC083345|Tuba1a|22142|tubulin, alpha 1A	AK145404|Tuba1a|22142|tubulin, alpha 1A	AK146983|Tuba1a|22142|tubulin, alpha 1A	AK167687|Tuba1a|22142|tubulin, alpha 1A	AK168762|Tuba1a|22142|tubulin, alpha 1A	AK169610|Tuba1a|22142|tubulin, alpha 1A	AK164335|Tuba1a|22142|tubulin, alpha 1A
mm9_v1_chr13_+_118391126_118391233	1.43828	NHLH1,2.p2	AK158322|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1	NM_010408|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1
mm9_v1_chr11_-_81781897_81781910	1.43734	NHLH1,2.p2	NM_001034013|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	AK134778|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	AF348465|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)
mm9_v1_chr10_+_93977597_93977699	1.43677	NHLH1,2.p2	NM_172051|Tmcc3|319880|transmembrane and coiled coil domains 3	AK132545|Tmcc3|319880|transmembrane and coiled coil domains 3	BC095951|Tmcc3|319880|transmembrane and coiled coil domains 3	AK083129|Tmcc3|319880|transmembrane and coiled coil domains 3
mm9_v1_chr7_-_125273061_125273141	1.4315	NHLH1,2.p2	BC046792|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AF133669|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AF223953|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	BC010196|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK152885|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK090001|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK150042|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK151272|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK151507|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK152565|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK163655|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK167912|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK168245|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK169191|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK150507|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK154644|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK167872|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK168172|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK154355|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AF172088|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK167888|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	NM_019419|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1
mm9_v1_chr17_-_25969789_25969866	1.43101	NHLH1,2.p2	BC020110|Stub1|56424|STIP1 homology and U-Box containing protein 1	AF129086|Stub1|56424|STIP1 homology and U-Box containing protein 1	AK004464|Stub1|56424|STIP1 homology and U-Box containing protein 1	AK045776|Stub1|56424|STIP1 homology and U-Box containing protein 1	AK002752|Stub1|56424|STIP1 homology and U-Box containing protein 1
mm9_v1_chr11_-_70501430_70501474	1.43096	NHLH1,2.p2	AK039670|Camta2|216874|calmodulin binding transcription activator 2	BC049133|Camta2|216874|calmodulin binding transcription activator 2	BC056395|Camta2|216874|calmodulin binding transcription activator 2	AK169118|Camta2|216874|calmodulin binding transcription activator 2	AK150186|Camta2|216874|calmodulin binding transcription activator 2
mm9_v1_chr5_+_89012600_89012641	1.43045	NHLH1,2.p2	AK045610|Rufy3|52822|RUN and FYVE domain containing 3	AK083242|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr5_+_53225301_53225438	1.42545	NHLH1,2.p2	AK168897|Anapc4|52206|anaphase promoting complex subunit 4	AK148625|Anapc4|52206|anaphase promoting complex subunit 4	BC024870|Anapc4|52206|anaphase promoting complex subunit 4	NM_024213|Anapc4|52206|anaphase promoting complex subunit 4	AK146000|Anapc4|52206|anaphase promoting complex subunit 4	AK168031|Anapc4|52206|anaphase promoting complex subunit 4	AK088759|Anapc4|52206|anaphase promoting complex subunit 4	BC016237|Anapc4|52206|anaphase promoting complex subunit 4
mm9_v1_chr4_-_132440285_132440436	1.42522	NHLH1,2.p2	AK167087|Stx12|100226|syntaxin 12	AB019211|Stx12|100226|syntaxin 12	AK168753|Stx12|100226|syntaxin 12	AK078948|Stx12|100226|syntaxin 12	AK132618|Stx12|100226|syntaxin 12	AK167804|Stx12|100226|syntaxin 12	BC010669|Stx12|100226|syntaxin 12	AK076390|Stx12|100226|syntaxin 12	AK146735|Stx12|100226|syntaxin 12	AK077678|Stx12|100226|syntaxin 12	NM_133887|Stx12|100226|syntaxin 12	AK146544|Stx12|100226|syntaxin 12	AK170203|Stx12|100226|syntaxin 12
mm9_v1_chr7_-_91520991_91521040	1.42392	NHLH1,2.p2	AK032628|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2
mm9_v1_chr2_+_38206759_38206827	1.42145	NHLH1,2.p2	AK053572|Lhx2|16870|LIM homeobox protein 2	NM_010710|Lhx2|16870|LIM homeobox protein 2
mm9_v1_chr8_-_73292296_73292389	1.41762	NHLH1,2.p2	
mm9_v1_chr9_-_45792865_45792953	1.41718	NHLH1,2.p2	AK164573|2610005M20Rik|70308|RIKEN cDNA 2610005M20 gene	AK012116|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	U57747|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	AK012164|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	BC003771|2610005M20Rik|70308|RIKEN cDNA 2610005M20 gene	BC002037|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	BC056211|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	AK011326|2610005M20Rik|70308|RIKEN cDNA 2610005M20 gene	AK153424|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	NM_008775|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
mm9_v1_chr1_+_7079042_7079277	1.41686	NHLH1,2.p2	AK079468|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK166166|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK168705|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	BC110360|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK134223|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK168606|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	BC019193|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK187882|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK040848|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK145008|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK166593|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm9_v1_chr2_+_25733302_25733389	1.41587	NHLH1,2.p2	BC141190|Kcnt1|227632|potassium channel, subfamily T, member 1	BC171963|Kcnt1|227632|potassium channel, subfamily T, member 1	AK086119|Kcnt1|227632|potassium channel, subfamily T, member 1	NM_175462|Kcnt1|227632|potassium channel, subfamily T, member 1	AK147625|Kcnt1|227632|potassium channel, subfamily T, member 1
mm9_v1_chr8_+_107800370_107800401	1.4095	NHLH1,2.p2	BC053971|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	AK021023|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)
mm9_v1_chr5_-_53604536_53604567	1.40818	NHLH1,2.p2	AK037220|Sel1l3|231238|sel-1 suppressor of lin-12-like 3 (C. elegans)	AK030487|Sel1l3|231238|sel-1 suppressor of lin-12-like 3 (C. elegans)
mm9_v1_chr19_+_16207300_16207320	1.40736	NHLH1,2.p2	AK147393|Gnaq|14682|guanine nucleotide binding protein, alpha q polypeptide	NM_008139|Gnaq|14682|guanine nucleotide binding protein, alpha q polypeptide
mm9_v1_chr11_+_80290571_80290592	1.40635	NHLH1,2.p2	AK043203|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK084003|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm9_v1_chr5_-_31597792_31598351	1.40539	NHLH1,2.p2	BC139278|Fndc4|64339|fibronectin type III domain containing 4	BC139292|Fndc4|64339|fibronectin type III domain containing 4	AK018154|Fndc4|64339|fibronectin type III domain containing 4	AK013203|Fndc4|64339|fibronectin type III domain containing 4	AK163183|Fndc4|64339|fibronectin type III domain containing 4	NM_022424|Fndc4|64339|fibronectin type III domain containing 4
mm9_v1_chr5_+_107926763_107926815	1.4029	NHLH1,2.p2	AK043587|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	NM_001007574|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK043720|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK164388|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK169666|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	NM_001168557|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene
mm9_v1_chr7_+_53152702_53152727	1.40254	NHLH1,2.p2	AK039173|Tmem143|70209|transmembrane protein 143
mm9_v1_chr2_-_166539288_166539340	1.40124	NHLH1,2.p2	AK156208|Prex1|277360|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	AK173168|Prex1|277360|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	NM_177782|Prex1|277360|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
mm9_v1_chr2_+_179777363_179777404	1.40063	NHLH1,2.p2	BC053087|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1
mm9_v1_chr12_+_113960530_113960572	1.4	NHLH1,2.p2	BC050077|AW555464|217882|expressed sequence AW555464
mm9_v1_chrX_-_7151340_7151452	1.39889	NHLH1,2.p2	BC059275|Ppp1r3f|54646|protein phosphatase 1, regulatory (inhibitor) subunit 3F
mm9_v1_chr2_-_91516101_91516113	1.39886	NHLH1,2.p2	BC024457|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)
mm9_v1_chr4_-_134828503_134828682	1.39804	NHLH1,2.p2	CT010279|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172516|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC052890|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC046384|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AF102578|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	NM_013885|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049191|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK150993|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK155826|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166794|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169376|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169834|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172660|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049255|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK031211|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK054024|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK152273|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK160856|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK161034|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172026|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK153432|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK159402|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166244|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK171243|Clic4|29876|chloride intracellular channel 4 (mitochondrial)
mm9_v1_chr2_-_168055851_168055889	1.39791	NHLH1,2.p2	AB004789|Dpm1|13480|dolichol-phosphate (beta-D) mannosyltransferase 1	BC061151|Dpm1|13480|dolichol-phosphate (beta-D) mannosyltransferase 1	AK005268|Dpm1|13480|dolichol-phosphate (beta-D) mannosyltransferase 1	AK008548|Dpm1|13480|dolichol-phosphate (beta-D) mannosyltransferase 1	AK004834|Dpm1|13480|dolichol-phosphate (beta-D) mannosyltransferase 1	NM_010072|Dpm1|13480|dolichol-phosphate (beta-D) mannosyltransferase 1
mm9_v1_chr6_+_115803545_115803666	1.3939	NHLH1,2.p2	NM_001167763|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	NM_031177|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	AK044456|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	AK167330|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	AK167412|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	BC060621|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	AK131115|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	BC066083|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	BC067415|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	AK031308|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)
mm9_v1_chr8_+_88016464_88016489	1.39315	NHLH1,2.p2	AK082030|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2	BC034219|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2
mm9_v1_chr2_-_134469754_134469776	1.3918	NHLH1,2.p2	BC050918|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK033111|Tmx4|52837|thioredoxin-related transmembrane protein 4
mm9_v1_chr17_-_56358176_56358341	1.38951	NHLH1,2.p2	AK050021|Dpp9|224897|dipeptidylpeptidase 9	AK078301|Dpp9|224897|dipeptidylpeptidase 9	BC057631|Dpp9|224897|dipeptidylpeptidase 9	AK050023|Dpp9|224897|dipeptidylpeptidase 9	NM_172624|Dpp9|224897|dipeptidylpeptidase 9	AK039652|Dpp9|224897|dipeptidylpeptidase 9
mm9_v1_chr8_-_107995252_107995266	1.38357	NHLH1,2.p2	BC010788|Tppp3|67971|tubulin polymerization-promoting protein family member 3
mm9_v1_chr15_-_57723866_57723934	1.38295	NHLH1,2.p2	AK075631|Derl1|67819|Der1-like domain family, member 1
mm9_v1_chr2_+_102390177_102390206	1.3808	NHLH1,2.p2	NM_173749|Pamr1|210622|peptidase domain containing associated with muscle regeneration 1	BC031841|Pamr1|210622|peptidase domain containing associated with muscle regeneration 1	BC057685|Pamr1|210622|peptidase domain containing associated with muscle regeneration 1
mm9_v1_chr7_+_53152425_53152567	1.38052	NHLH1,2.p2	NM_144801|Tmem143|70209|transmembrane protein 143	BC017618|Tmem143|70209|transmembrane protein 143	AK035836|Tmem143|70209|transmembrane protein 143	AK010209|Tmem143|70209|transmembrane protein 143	AK171908|Tmem143|70209|transmembrane protein 143	AK087636|Tmem143|70209|transmembrane protein 143
mm9_v1_chr17_-_15963016_15963102	1.38029	NHLH1,2.p2	AK004310|Rgmb|68799|RGM domain family, member B
mm9_v1_chr7_+_4071171_4071355	1.37923	NHLH1,2.p2	AF190699|Ttyh1|57776|tweety homolog 1 (Drosophila)	AF190991|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK081981|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK048413|Ttyh1|57776|tweety homolog 1 (Drosophila)	BC065694|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK018148|Ttyh1|57776|tweety homolog 1 (Drosophila)	BC046310|Ttyh1|57776|tweety homolog 1 (Drosophila)	AB162929|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK042758|Ttyh1|57776|tweety homolog 1 (Drosophila)
mm9_v1_chr7_-_116895708_116895795	1.37685	NHLH1,2.p2	AK009147|Tmem9b|56786|TMEM9 domain family, member B	AK077253|Tmem9b|56786|TMEM9 domain family, member B	AK007430|Tmem9b|56786|TMEM9 domain family, member B	BC002208|Tmem9b|56786|TMEM9 domain family, member B	NM_020050|Tmem9b|56786|TMEM9 domain family, member B	AK147127|Tmem9b|56786|TMEM9 domain family, member B
mm9_v1_chr18_+_36508277_36508452	1.376	NHLH1,2.p2	NM_001081365|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene	BC028765|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene	AK167679|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene	AK002512|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene	AK028217|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene	AK089711|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene
mm9_v1_chr11_+_82202401_82202479	1.37583	NHLH1,2.p2	NM_023438|Tmem132e|270893|transmembrane protein 132E	BC137906|Tmem132e|270893|transmembrane protein 132E	BC145026|Tmem132e|270893|transmembrane protein 132E
mm9_v1_chr18_+_37890662_37890807	1.3722	NHLH1,2.p2	BC057403|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	AK156301|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	AY013807|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	NM_033577|Pcdhgb5|93702|protocadherin gamma subfamily B, 5
mm9_v1_chr6_-_119279221_119279221	1.37202	NHLH1,2.p2	NM_001172207|Lrtm2|211187|leucine-rich repeats and transmembrane domains 2
mm9_v1_chr14_-_70204956_70205151	1.37193	NHLH1,2.p2	BC056954|Rhobtb2|246710|Rho-related BTB domain containing 2	AK037927|Rhobtb2|246710|Rho-related BTB domain containing 2
mm9_v1_chr5_+_30062437_30062485	1.37149	NHLH1,2.p2	NM_001037940|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	NM_001037941|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	NM_001127367|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	NM_011847|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK134387|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6
mm9_v1_chr11_+_59475986_59476013	1.37031	NHLH1,2.p2	AK154807|Mprip|26936|myosin phosphatase Rho interacting protein	NM_012027|Mprip|26936|myosin phosphatase Rho interacting protein	NM_201245|Mprip|26936|myosin phosphatase Rho interacting protein	AK158296|Mprip|26936|myosin phosphatase Rho interacting protein	AK171089|Mprip|26936|myosin phosphatase Rho interacting protein	AK170849|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr8_-_74009856_74009896	1.36966	NHLH1,2.p2	BC027735|Ano8|382014|anoctamin 8
mm9_v1_chr16_-_60605339_60605356	1.36886	NHLH1,2.p2	AK135075|Epha6|13840|Eph receptor A6	AK090366|Epha6|13840|Eph receptor A6	NM_007938|Epha6|13840|Eph receptor A6
mm9_v1_chr17_+_46247928_46248012	1.36877	NHLH1,2.p2	AB049953|Mrps18a|68565|mitochondrial ribosomal protein S18A	AK003444|Mrps18a|68565|mitochondrial ribosomal protein S18A	NM_026768|Mrps18a|68565|mitochondrial ribosomal protein S18A	AK028226|Mrps18a|68565|mitochondrial ribosomal protein S18A	AK172171|Mrps18a|68565|mitochondrial ribosomal protein S18A	BC058959|Mrps18a|68565|mitochondrial ribosomal protein S18A
mm9_v1_chr14_-_26588341_26588548	1.36782	NHLH1,2.p2	NM_001101433|Zcchc24|71918|zinc finger, CCHC domain containing 24	BC147263|Zcchc24|71918|zinc finger, CCHC domain containing 24	BC147264|Zcchc24|71918|zinc finger, CCHC domain containing 24
mm9_v1_chr1_-_94044969_94044969	1.36627	NHLH1,2.p2	BC066052|Hdac4|208727|histone deacetylase 4	NM_207225|Hdac4|208727|histone deacetylase 4
mm9_v1_chr14_+_69955194_69955282	1.36501	NHLH1,2.p2	NM_026174|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK045342|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK004761|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK042053|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	BC052090|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	BC043134|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4
mm9_v1_chr7_-_64642165_64642240	1.36039	NHLH1,2.p2	X59300|Gabrg3|14407|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3	BC138962|Gabrg3|14407|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3	BC138963|Gabrg3|14407|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3	AK046263|Gabrg3|14407|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3	NM_008074|Gabrg3|14407|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3
mm9_v1_chr3_-_108218411_108218411	1.36008	NHLH1,2.p2	AB028499|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	NM_001004177|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	NM_017392|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)
mm9_v1_chr2_+_91490266_91490274	1.35891	NHLH1,2.p2	AK046291|Arhgap1|228359|Rho GTPase activating protein 1	NM_001145902|Arhgap1|228359|Rho GTPase activating protein 1
mm9_v1_chr16_-_60605072_60605085	1.35692	NHLH1,2.p2	U58332|Epha6|13840|Eph receptor A6
mm9_v1_chr2_+_35477568_35477592	1.3568	NHLH1,2.p2	AK147464|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	AK164475|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr3_-_40886908_40886954	1.35647	NHLH1,2.p2	BC044759|Pgrmc2|70804|progesterone receptor membrane component 2	AX775753|Pgrmc2|70804|progesterone receptor membrane component 2	AK140064|Pgrmc2|70804|progesterone receptor membrane component 2
mm9_v1_chr15_-_84388113_84388233	1.3564	NHLH1,2.p2	AK083881|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like
mm9_v1_chr10_+_115738429_115738633	1.35384	NHLH1,2.p2	AK147439|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	AK147668|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	NM_029928|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	AY077755|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	BC141006|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	BC145111|Ptprb|19263|protein tyrosine phosphatase, receptor type, B
mm9_v1_chr5_+_122841885_122841976	1.35235	NHLH1,2.p2	AK003485|Arpc3|56378|actin related protein 2/3 complex, subunit 3	AK005437|Arpc3|56378|actin related protein 2/3 complex, subunit 3	AK171651|Arpc3|56378|actin related protein 2/3 complex, subunit 3	BC013618|Arpc3|56378|actin related protein 2/3 complex, subunit 3	NM_019824|Arpc3|56378|actin related protein 2/3 complex, subunit 3	BC054440|Arpc3|56378|actin related protein 2/3 complex, subunit 3	BC055036|Arpc3|56378|actin related protein 2/3 complex, subunit 3
mm9_v1_chr7_-_99785544_99785651	1.35201	NHLH1,2.p2	AK048925|Ankrd42|73845|ankyrin repeat domain 42	AK029888|Ankrd42|73845|ankyrin repeat domain 42	AK133339|Ankrd42|73845|ankyrin repeat domain 42	AK033599|Ankrd42|73845|ankyrin repeat domain 42	BC100433|Ankrd42|73845|ankyrin repeat domain 42	AK029511|Ankrd42|73845|ankyrin repeat domain 42	NM_028665|Ankrd42|73845|ankyrin repeat domain 42
mm9_v1_chr3_-_143865162_143865359	1.35183	NHLH1,2.p2	BC003488|Lmo4|16911|LIM domain only 4	BC100382|Lmo4|16911|LIM domain only 4	AF102817|Lmo4|16911|LIM domain only 4	AK138278|Lmo4|16911|LIM domain only 4	NM_001161770|Lmo4|16911|LIM domain only 4	NM_001161769|Lmo4|16911|LIM domain only 4
mm9_v1_chr11_+_70027397_70027411	1.35143	NHLH1,2.p2	NM_153081|Slc16a11|216867|solute carrier family 16 (monocarboxylic acid transporters), member 11
mm9_v1_chr1_+_72330942_72330988	1.35129	NHLH1,2.p2	AK034935|Tmem169|271711|transmembrane protein 169	AK043681|Tmem169|271711|transmembrane protein 169	NM_175564|Tmem169|271711|transmembrane protein 169	AK084021|Tmem169|271711|transmembrane protein 169
mm9_v1_chr9_-_64101354_64101425	1.35108	NHLH1,2.p2	AK167336|Map2k1|26395|mitogen-activated protein kinase kinase 1	AB041567|Map2k1|26395|mitogen-activated protein kinase kinase 1	AK146233|Map2k1|26395|mitogen-activated protein kinase kinase 1	AK146931|Map2k1|26395|mitogen-activated protein kinase kinase 1	AK165894|Map2k1|26395|mitogen-activated protein kinase kinase 1	NM_008927|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr5_+_117807290_117807469	1.35084	NHLH1,2.p2	AK080976|Wsb2|59043|WD repeat and SOCS box-containing 2	BC055100|Wsb2|59043|WD repeat and SOCS box-containing 2	NM_021539|Wsb2|59043|WD repeat and SOCS box-containing 2	AK157999|Wsb2|59043|WD repeat and SOCS box-containing 2	AF072881|Wsb2|59043|WD repeat and SOCS box-containing 2	AF033188|Wsb2|59043|WD repeat and SOCS box-containing 2
mm9_v1_chr14_-_50403002_50403057	1.34874	NHLH1,2.p2	AK014402|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	BC023359|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK028178|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK032093|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	NM_026142|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK028180|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK049427|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK014563|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene
mm9_v1_chr6_-_53770406_53770488	1.34766	NHLH1,2.p2	AK122338|Tril|66873|TLR4 interactor with leucine-rich repeats	AK033401|Tril|66873|TLR4 interactor with leucine-rich repeats	AK004681|Tril|66873|TLR4 interactor with leucine-rich repeats
mm9_v1_chr2_+_30219752_30219824	1.34745	NHLH1,2.p2	AK165996|Fam73b|108958|family with sequence similarity 73, member B	AK154200|Fam73b|108958|family with sequence similarity 73, member B	AK140122|Fam73b|108958|family with sequence similarity 73, member B	AK040713|Fam73b|108958|family with sequence similarity 73, member B	AK077618|Fam73b|108958|family with sequence similarity 73, member B
mm9_v1_chr9_-_36954842_36954852	1.34645	NHLH1,2.p2	AK144270|Pknox2|208076|Pbx/knotted 1 homeobox 2	AK084178|Pknox2|208076|Pbx/knotted 1 homeobox 2	AK082952|Pknox2|208076|Pbx/knotted 1 homeobox 2	NM_001029838|Pknox2|208076|Pbx/knotted 1 homeobox 2
mm9_v1_chrX_+_5624820_5624925	1.34634	NHLH1,2.p2	BC071274|Nudt11|58242|nudix (nucleoside diphosphate linked moiety X)-type motif 11	AK053310|Nudt11|58242|nudix (nucleoside diphosphate linked moiety X)-type motif 11	AB041576|Nudt11|58242|nudix (nucleoside diphosphate linked moiety X)-type motif 11	AY152853|Nudt11|58242|nudix (nucleoside diphosphate linked moiety X)-type motif 11
mm9_v1_chr17_-_24342446_24342565	1.34489	NHLH1,2.p2	AK036088|Tbc1d24|224617|TBC1 domain family, member 24	AK129304|Tbc1d24|224617|TBC1 domain family, member 24	AK084693|Tbc1d24|224617|TBC1 domain family, member 24	AK086293|Tbc1d24|224617|TBC1 domain family, member 24	AK138431|Tbc1d24|224617|TBC1 domain family, member 24	AK045194|Tbc1d24|224617|TBC1 domain family, member 24	AK083833|Tbc1d24|224617|TBC1 domain family, member 24	AK049754|Tbc1d24|224617|TBC1 domain family, member 24	AK147647|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163847|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163848|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163849|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163850|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163851|Tbc1d24|224617|TBC1 domain family, member 24	NM_173186|Tbc1d24|224617|TBC1 domain family, member 24	AK172594|Ntn3|18209|netrin 3
mm9_v1_chr11_-_97883924_97884006	1.34251	NHLH1,2.p2	BC077713|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	AK155193|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	NM_001159319|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	NM_031173|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	NM_145121|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	AF322905|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit
mm9_v1_chr8_+_41509109_41509241	1.34229	NHLH1,2.p2	AK030662|Zdhhc2|70546|zinc finger, DHHC domain containing 2	NM_178395|Zdhhc2|70546|zinc finger, DHHC domain containing 2	AK136296|Zdhhc2|70546|zinc finger, DHHC domain containing 2	AK046533|Zdhhc2|70546|zinc finger, DHHC domain containing 2	AK044652|Zdhhc2|70546|zinc finger, DHHC domain containing 2	BC117761|Zdhhc2|70546|zinc finger, DHHC domain containing 2	BC127156|Zdhhc2|70546|zinc finger, DHHC domain containing 2	AK018284|Zdhhc2|70546|zinc finger, DHHC domain containing 2
mm9_v1_chr2_-_140497183_140497200	1.34191	NHLH1,2.p2	AK045146|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK021255|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	BC052043|Flrt3|71436|fibronectin leucine rich transmembrane protein 3
mm9_v1_chr10_-_127058163_127058193	1.34179	NHLH1,2.p2	AF367720|Lrp1|16971|low density lipoprotein receptor-related protein 1	X67469|Lrp1|16971|low density lipoprotein receptor-related protein 1
mm9_v1_chr11_+_103994160_103994195	1.33829	NHLH1,2.p2	AK158806|Crhr1|12921|corticotropin releasing hormone receptor 1	NM_007762|Crhr1|12921|corticotropin releasing hormone receptor 1
mm9_v1_chr11_+_62094922_62095025	1.33823	NHLH1,2.p2	AK008442|Ttc19|72795|tetratricopeptide repeat domain 19	NM_028360|Ttc19|72795|tetratricopeptide repeat domain 19	NM_029704|Ttc19|72795|tetratricopeptide repeat domain 19	AK034075|Ttc19|72795|tetratricopeptide repeat domain 19
mm9_v1_chr19_+_47253309_47253309	1.33809	NHLH1,2.p2	BC099702|Neurl1a|18011|neuralized homolog 1A (Drosophila)	NM_021360|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr4_+_151671441_151671540	1.338	NHLH1,2.p2	NM_133788|Icmt|57295|isoprenylcysteine carboxyl methyltransferase	AF209926|Icmt|57295|isoprenylcysteine carboxyl methyltransferase
mm9_v1_chr5_-_31593411_31593494	1.33761	NHLH1,2.p2	AK144190|Ift172|67661|intraflagellar transport 172 homolog (Chlamydomonas)	AY339616|Ift172|67661|intraflagellar transport 172 homolog (Chlamydomonas)	BC042583|Ift172|67661|intraflagellar transport 172 homolog (Chlamydomonas)	AK043642|Ift172|67661|intraflagellar transport 172 homolog (Chlamydomonas)	BC066096|Ift172|67661|intraflagellar transport 172 homolog (Chlamydomonas)	NM_026298|Ift172|67661|intraflagellar transport 172 homolog (Chlamydomonas)
mm9_v1_chr11_+_68505616_68505655	1.33681	NHLH1,2.p2	AK045066|Myh10|77579|myosin, heavy polypeptide 10, non-muscle	AK045074|Myh10|77579|myosin, heavy polypeptide 10, non-muscle	BC089011|Myh10|77579|myosin, heavy polypeptide 10, non-muscle
mm9_v1_chr16_-_31948480_31948624	1.33652	NHLH1,2.p2	AK002881|0610012G03Rik|106264|RIKEN cDNA 0610012G03 gene	BC021536|0610012G03Rik|106264|RIKEN cDNA 0610012G03 gene	AK011122|0610012G03Rik|106264|RIKEN cDNA 0610012G03 gene	AK002600|0610012G03Rik|106264|RIKEN cDNA 0610012G03 gene	AK009191|0610012G03Rik|106264|RIKEN cDNA 0610012G03 gene	AK146135|0610012G03Rik|106264|RIKEN cDNA 0610012G03 gene
mm9_v1_chr11_-_59041767_59041787	1.33565	NHLH1,2.p2	NM_007476|Arf1|11840|ADP-ribosylation factor 1
mm9_v1_chr4_+_155266340_155266446	1.33234	NHLH1,2.p2	BC098196|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	BC025556|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm9_v1_chr12_-_8506790_8506819	1.33166	NHLH1,2.p2	BC018275|Rhob|11852|ras homolog gene family, member B	NM_007483|Rhob|11852|ras homolog gene family, member B	BC110992|Rhob|11852|ras homolog gene family, member B	AK167917|Rhob|11852|ras homolog gene family, member B	AK086873|Rhob|11852|ras homolog gene family, member B	AK164518|Rhob|11852|ras homolog gene family, member B
mm9_v1_chr8_+_26629736_26629790	1.33091	NHLH1,2.p2	S47233|Fgfr1|14182|fibroblast growth factor receptor 1	AK028354|Fgfr1|14182|fibroblast growth factor receptor 1
mm9_v1_chr5_-_147396814_147396814	1.32965	NHLH1,2.p2	AK140298|Gpr12|14738|G-protein coupled receptor 12	NM_001010941|Gpr12|14738|G-protein coupled receptor 12
mm9_v1_chr17_-_57226987_57227204	1.32699	NHLH1,2.p2	BC054831|Tubb4|22153|tubulin, beta 4	AK013717|Tubb4|22153|tubulin, beta 4	BC049112|Tubb4|22153|tubulin, beta 4	NM_009451|Tubb4|22153|tubulin, beta 4
mm9_v1_chr4_+_33295965_33295965	1.32676	NHLH1,2.p2	AK046869|Srsf13b|272009|serine/arginine-rich splicing factor 13B	NM_177774|Srsf13b|272009|serine/arginine-rich splicing factor 13B
mm9_v1_chr2_+_151368331_151368443	1.32667	NHLH1,2.p2	AK002777|Fkbp1a|14225|FK506 binding protein 1a	X60203|Fkbp1a|14225|FK506 binding protein 1a	BC004671|Fkbp1a|14225|FK506 binding protein 1a	AK154751|Fkbp1a|14225|FK506 binding protein 1a	AK169186|Fkbp1a|14225|FK506 binding protein 1a	AB241120|Fkbp1a|14225|FK506 binding protein 1a	AB241121|Fkbp1a|14225|FK506 binding protein 1a	AB241122|Fkbp1a|14225|FK506 binding protein 1a	AF483488|Fkbp1a|14225|FK506 binding protein 1a	AF483489|Fkbp1a|14225|FK506 binding protein 1a
mm9_v1_chr7_+_17460697_17460886	1.32356	NHLH1,2.p2	AB073971|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm9_v1_chr19_-_55173908_55173946	1.32293	NHLH1,2.p2	BC019201|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial	NM_008149|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial
mm9_v1_chr10_-_77875707_77875787	1.32253	NHLH1,2.p2	BC065994|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	AK077540|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	BC022910|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	U79773|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	U79774|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	BC065993|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	NM_010925|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)
mm9_v1_chr7_-_87065480_87065546	1.32101	NHLH1,2.p2	U91933|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	BC060236|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	BC028319|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK037336|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK028372|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK083911|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK150085|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	NM_009682|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit
mm9_v1_chr7_-_146399089_146399205	1.31866	NHLH1,2.p2	NM_001162540|Stk32c|57740|serine/threonine kinase 32C
mm9_v1_chr16_+_13256573_13256634	1.31655	NHLH1,2.p2	NM_001122667|Mkl2|239719|MKL/myocardin-like 2	X66901|Mkl2|239719|MKL/myocardin-like 2
mm9_v1_chr19_+_4510471_4510550	1.31601	NHLH1,2.p2	NM_001162946|Pcx|18563|pyruvate carboxylase	AK170596|Pcx|18563|pyruvate carboxylase	AK170871|Pcx|18563|pyruvate carboxylase	AK148328|Pcx|18563|pyruvate carboxylase	BC055030|Pcx|18563|pyruvate carboxylase	AK128927|Pcx|18563|pyruvate carboxylase	AK172320|Pcx|18563|pyruvate carboxylase
mm9_v1_chr11_+_67399999_67400271	1.31576	NHLH1,2.p2	AK031455|Gas7|14457|growth arrest specific 7	NM_001109657|Gas7|14457|growth arrest specific 7	AK154463|Gas7|14457|growth arrest specific 7	AK017394|Gas7|14457|growth arrest specific 7
mm9_v1_chr2_-_155644921_155645017	1.3145	NHLH1,2.p2	AK157030|BC029722|613262|cDNA sequence BC029722	AK158030|BC029722|613262|cDNA sequence BC029722	BC029722|BC029722|613262|cDNA sequence BC029722	AK159419|BC029722|613262|cDNA sequence BC029722
mm9_v1_chr13_+_54890763_54890824	1.31308	NHLH1,2.p2	AK166272|Tspan17|74257|tetraspanin 17	NM_028841|Tspan17|74257|tetraspanin 17	AK171691|Tspan17|74257|tetraspanin 17	BC010346|Tspan17|74257|tetraspanin 17	AK008761|Tspan17|74257|tetraspanin 17
mm9_v1_chr12_-_14158843_14158897	1.31225	NHLH1,2.p2	BC005488|Fam84a|105005|family with sequence similarity 84, member A	NM_029007|Fam84a|105005|family with sequence similarity 84, member A	AK014625|Fam84a|105005|family with sequence similarity 84, member A
mm9_v1_chr1_-_129574597_129574597	1.31178	NHLH1,2.p2	BC046234|Tmem163|72160|transmembrane protein 163	BC059048|Tmem163|72160|transmembrane protein 163	NM_028135|Tmem163|72160|transmembrane protein 163
mm9_v1_chr13_+_21813912_21813966	1.30916	NHLH1,2.p2	BC139381|Hist1h2bm|319186|histone cluster 1, H2bm	BC139382|Hist1h2bm|319186|histone cluster 1, H2bm	NM_178200|Hist1h2bm|319186|histone cluster 1, H2bm
mm9_v1_chr6_+_77192615_77192722	1.30916	NHLH1,2.p2	AK080836|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	NM_028880|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	AK014545|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	AK053345|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1
mm9_v1_chr17_-_25933867_25933930	1.30867	NHLH1,2.p2	BC008695|Metrn|70083|meteorin, glial cell differentiation regulator	BC037181|Metrn|70083|meteorin, glial cell differentiation regulator	DQ133462|Metrn|70083|meteorin, glial cell differentiation regulator	DQ133463|Metrn|70083|meteorin, glial cell differentiation regulator	DQ133464|Metrn|70083|meteorin, glial cell differentiation regulator	AK007688|Metrn|70083|meteorin, glial cell differentiation regulator
mm9_v1_chr4_-_137952372_137952372	1.30477	NHLH1,2.p2	AK134570|Fam43b|625638|family with sequence similarity 43, member B	NM_001081672|Fam43b|625638|family with sequence similarity 43, member B
mm9_v1_chr15_-_89422293_89422353	1.30352	NHLH1,2.p2	AK170205|Rabl2|68708|RAB, member of RAS oncogene family-like 2	AK004012|Rabl2|68708|RAB, member of RAS oncogene family-like 2	BC030376|Rabl2|68708|RAB, member of RAS oncogene family-like 2	AK051232|Rabl2|68708|RAB, member of RAS oncogene family-like 2	NM_026817|Rabl2|68708|RAB, member of RAS oncogene family-like 2
mm9_v1_chr3_+_108087046_108087050	1.30286	NHLH1,2.p2	BC056343|Sort1|20661|sortilin 1	NM_019972|Sort1|20661|sortilin 1
mm9_v1_chr14_+_33670038_33670099	1.30283	NHLH1,2.p2	AK040699|E130203B14Rik|320736|RIKEN cDNA E130203B14 gene
mm9_v1_chr8_+_13287887_13288012	1.30139	NHLH1,2.p2	NM_172282|Tmco3|234076|transmembrane and coiled-coil domains 3
mm9_v1_chr10_-_22451093_22451193	1.30122	NHLH1,2.p2	BC033926|Tbpl1|237336|TATA box binding protein-like 1	AK049975|Tbpl1|237336|TATA box binding protein-like 1	AB017697|Tbpl1|237336|TATA box binding protein-like 1	AK078547|Tbpl1|237336|TATA box binding protein-like 1
mm9_v1_chr4_+_103292164_103292269	1.29989	NHLH1,2.p2	BC051993|Dab1|13131|disabled homolog 1 (Drosophila)
mm9_v1_chr7_-_31148021_31148160	1.2998	NHLH1,2.p2	BC066999|Lrfn3|233067|leucine rich repeat and fibronectin type III domain containing 3
mm9_v1_chr13_+_74487763_74487789	1.29733	NHLH1,2.p2	AK164539|Ccdc127|67433|coiled-coil domain containing 127	NM_001168658|Ccdc127|67433|coiled-coil domain containing 127	NM_001168659|Ccdc127|67433|coiled-coil domain containing 127	NM_024201|Ccdc127|67433|coiled-coil domain containing 127	AK170932|Ccdc127|67433|coiled-coil domain containing 127	AK002564|Ccdc127|67433|coiled-coil domain containing 127
mm9_v1_chr2_+_164312376_164312376	1.29708	NHLH1,2.p2	AK003735|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2	NM_001048228|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr2_+_143741050_143741074	1.29667	NHLH1,2.p2	NM_019771|Dstn|56431|destrin
mm9_v1_chr5_+_139230946_139231095	1.29502	NHLH1,2.p2	NM_030565|Fam20c|80752|family with sequence similarity 20, member C	AK149780|Fam20c|80752|family with sequence similarity 20, member C	AK154810|Fam20c|80752|family with sequence similarity 20, member C	AY778962|Fam20c|80752|family with sequence similarity 20, member C	BC025826|Fam20c|80752|family with sequence similarity 20, member C	BC025814|Fam20c|80752|family with sequence similarity 20, member C
mm9_v1_chr16_+_38742365_38742408	1.29428	NHLH1,2.p2	AK050005|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	NM_019804|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK052013|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK053603|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK085368|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	BC031115|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AF142672|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AF158746|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK045602|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK018658|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	BC013492|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4
mm9_v1_chr13_+_9275741_9275783	1.29365	NHLH1,2.p2	NM_001081426|Dip2c|208440|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm9_v1_chr3_-_94386449_94386477	1.29316	NHLH1,2.p2	AK122296|Snx27|76742|sorting nexin family member 27	BC053495|Snx27|76742|sorting nexin family member 27
mm9_v1_chr12_+_8980697_8980864	1.29302	NHLH1,2.p2	BC056925|Wdr35|74682|WD repeat domain 35	NM_001159527|Wdr35|74682|WD repeat domain 35	NM_172470|Wdr35|74682|WD repeat domain 35	AK031061|Wdr35|74682|WD repeat domain 35	AK015490|Wdr35|74682|WD repeat domain 35	AK029896|Wdr35|74682|WD repeat domain 35	AK053724|Wdr35|74682|WD repeat domain 35	AK083971|Wdr35|74682|WD repeat domain 35	AK173151|Wdr35|74682|WD repeat domain 35
mm9_v1_chr5_+_125921888_125921947	1.29241	NHLH1,2.p2	NM_029752|Bri3bp|76809|Bri3 binding protein
mm9_v1_chr7_+_19576593_19576667	1.29064	NHLH1,2.p2	NM_145579|Mypop|232934|Myb-related transcription factor, partner of profilin	M82902|Mypop|232934|Myb-related transcription factor, partner of profilin	AF364868|Mypop|232934|Myb-related transcription factor, partner of profilin
mm9_v1_chr3_+_95428870_95428903	1.28915	NHLH1,2.p2	AK011334|Ensa|56205|endosulfine alpha	AK019170|Ensa|56205|endosulfine alpha	NM_001026212|Ensa|56205|endosulfine alpha	NM_019561|Ensa|56205|endosulfine alpha
mm9_v1_chr17_-_32487506_32487542	1.28866	NHLH1,2.p2	BC046801|Akap8l|54194|A kinase (PRKA) anchor protein 8-like	AB028921|Akap8l|54194|A kinase (PRKA) anchor protein 8-like	BC062877|Akap8l|54194|A kinase (PRKA) anchor protein 8-like	BC051015|Akap8l|54194|A kinase (PRKA) anchor protein 8-like	NM_017476|Akap8l|54194|A kinase (PRKA) anchor protein 8-like	AK011325|Akap8l|54194|A kinase (PRKA) anchor protein 8-like	AK166526|Akap8l|54194|A kinase (PRKA) anchor protein 8-like
mm9_v1_chr4_+_136025675_136025745	1.28709	NHLH1,2.p2	AK139583|Luzp1|269593|leucine zipper protein 1	NM_024452|Luzp1|269593|leucine zipper protein 1	AK012514|Luzp1|269593|leucine zipper protein 1	BC026746|Luzp1|269593|leucine zipper protein 1
mm9_v1_chr11_+_98209978_98210141	1.28663	NHLH1,2.p2	BC026568|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B	NM_144828|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B	BC011122|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B
mm9_v1_chr5_-_124545776_124545806	1.27828	NHLH1,2.p2	AK044140|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	AB093298|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	BC026455|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	AF216495|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	NM_019875|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9
mm9_v1_chr5_-_107125559_107125584	1.2774	NHLH1,2.p2	AK162026|Zfp644|52397|zinc finger protein 644
mm9_v1_chr7_+_28043740_28043802	1.27656	NHLH1,2.p2	NM_010950|Numbl|18223|numb-like
mm9_v1_chr5_+_91946651_91946764	1.27629	NHLH1,2.p2	AK148300|Parm1|231440|prostate androgen-regulated mucin-like protein 1	AK078943|Parm1|231440|prostate androgen-regulated mucin-like protein 1	BC006604|Parm1|231440|prostate androgen-regulated mucin-like protein 1	NM_145562|Parm1|231440|prostate androgen-regulated mucin-like protein 1	AK167402|Parm1|231440|prostate androgen-regulated mucin-like protein 1	AK161172|Parm1|231440|prostate androgen-regulated mucin-like protein 1	AK078862|Parm1|231440|prostate androgen-regulated mucin-like protein 1
mm9_v1_chr17_+_25864655_25864695	1.276	NHLH1,2.p2	AK009926|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1	AK049334|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1	NM_028009|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1
mm9_v1_chr9_+_120213190_120213236	1.27498	NHLH1,2.p2	AK083225|Myrip|245049|myosin VIIA and Rab interacting protein	NM_144557|Myrip|245049|myosin VIIA and Rab interacting protein	AK038988|Myrip|245049|myosin VIIA and Rab interacting protein
mm9_v1_chr9_-_58884114_58884258	1.27345	NHLH1,2.p2	Y09535|Neo1|18007|neogenin	BC054540|Neo1|18007|neogenin	AK084609|Neo1|18007|neogenin	NM_001042752|Neo1|18007|neogenin	NM_008684|Neo1|18007|neogenin
mm9_v1_chr7_-_85722668_85722860	1.27201	NHLH1,2.p2	AY336094|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	NM_008746|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	NM_182809|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	BC139764|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	AF035399|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	AF035400|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3
mm9_v1_chr5_-_108298126_108298186	1.27195	NHLH1,2.p2	AK134294|Evi5|14020|ecotropic viral integration site 5	AK162905|Evi5|14020|ecotropic viral integration site 5
mm9_v1_chr5_-_149364353_149364422	1.26937	NHLH1,2.p2	NM_011908|Ubl3|24109|ubiquitin-like 3	BC024507|Ubl3|24109|ubiquitin-like 3	BC043729|Ubl3|24109|ubiquitin-like 3
mm9_v1_chr9_+_55889731_55889871	1.26906	NHLH1,2.p2	AK076153|Rcn2|26611|reticulocalbin 2
mm9_v1_chr11_+_68505612_68505615	1.26786	NHLH1,2.p2	AK029236|Myh10|77579|myosin, heavy polypeptide 10, non-muscle	BC098465|Myh10|77579|myosin, heavy polypeptide 10, non-muscle
mm9_v1_chr6_+_125165597_125165677	1.26772	NHLH1,2.p2	AK018783|Vamp1|22317|vesicle-associated membrane protein 1	AK037711|Vamp1|22317|vesicle-associated membrane protein 1	AK078156|Vamp1|22317|vesicle-associated membrane protein 1	NM_001080557|Vamp1|22317|vesicle-associated membrane protein 1	NM_009496|Vamp1|22317|vesicle-associated membrane protein 1	BC057587|Vamp1|22317|vesicle-associated membrane protein 1	BC049902|Vamp1|22317|vesicle-associated membrane protein 1	U61751|Vamp1|22317|vesicle-associated membrane protein 1
mm9_v1_chr17_+_8138892_8139016	1.26487	NHLH1,2.p2	AK016364|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)	BC150663|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)
mm9_v1_chrX_+_91612443_91612460	1.26328	NHLH1,2.p2	NM_026673|Apoo|68316|apolipoprotein O
mm9_v1_chr1_-_34899869_34899871	1.26283	NHLH1,2.p2	BC040511|Fam168b|214469|family with sequence similarity 168, member B	BC059247|Fam168b|214469|family with sequence similarity 168, member B
mm9_v1_chr17_-_24769569_24769573	1.26118	NHLH1,2.p2	AK143799|Tsc2|22084|tuberous sclerosis 2	AK147908|Tsc2|22084|tuberous sclerosis 2	NM_001039363|Tsc2|22084|tuberous sclerosis 2	NM_011647|Tsc2|22084|tuberous sclerosis 2
mm9_v1_chr13_+_54472705_54472742	1.26083	NHLH1,2.p2	NM_009946|Cplx2|12890|complexin 2
mm9_v1_chr8_-_13494457_13494536	1.25848	NHLH1,2.p2	BC005444|Gas6|14456|growth arrest specific 6	X59846|Gas6|14456|growth arrest specific 6	AK086187|Gas6|14456|growth arrest specific 6	NM_019521|Gas6|14456|growth arrest specific 6
mm9_v1_chr17_+_73186929_73186985	1.25841	NHLH1,2.p2	BC085109|Ypel5|383295|yippee-like 5 (Drosophila)
mm9_v1_chr19_-_7061958_7062092	1.2575	NHLH1,2.p2	U48800|Vegfb|22340|vascular endothelial growth factor B	U52820|Vegfb|22340|vascular endothelial growth factor B	U43836|Vegfb|22340|vascular endothelial growth factor B
mm9_v1_chr12_+_8928820_8928943	1.25622	NHLH1,2.p2	AK165638|Laptm4a|17775|lysosomal-associated protein transmembrane 4A	AK088958|Laptm4a|17775|lysosomal-associated protein transmembrane 4A	AK075699|Laptm4a|17775|lysosomal-associated protein transmembrane 4A	BC089021|Laptm4a|17775|lysosomal-associated protein transmembrane 4A	EF437361|Laptm4a|17775|lysosomal-associated protein transmembrane 4A	BC086667|Laptm4a|17775|lysosomal-associated protein transmembrane 4A
mm9_v1_chr9_-_108363911_108363911	1.25618	NHLH1,2.p2	AK019849|Klhdc8b|78267|kelch domain containing 8B	NM_030075|Klhdc8b|78267|kelch domain containing 8B
mm9_v1_chr13_-_100785593_100785609	1.25333	NHLH1,2.p2	AK143233|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	NM_030026|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
mm9_v1_chr5_+_58111361_58111407	1.25254	NHLH1,2.p2	AK165115|Pcdh7|54216|protocadherin 7
mm9_v1_chr10_-_75700507_75700611	1.24814	NHLH1,2.p2	BC122563|Prmt2|15468|protein arginine N-methyltransferase 2	BC125275|Prmt2|15468|protein arginine N-methyltransferase 2	AF169620|Prmt2|15468|protein arginine N-methyltransferase 2	BC088997|Prmt2|15468|protein arginine N-methyltransferase 2	AK144412|Prmt2|15468|protein arginine N-methyltransferase 2	AK146754|Prmt2|15468|protein arginine N-methyltransferase 2	AK077456|Prmt2|15468|protein arginine N-methyltransferase 2	AK145829|Prmt2|15468|protein arginine N-methyltransferase 2	AK146966|Prmt2|15468|protein arginine N-methyltransferase 2	AK159186|Prmt2|15468|protein arginine N-methyltransferase 2	AK140200|Prmt2|15468|protein arginine N-methyltransferase 2	NM_001077638|Prmt2|15468|protein arginine N-methyltransferase 2	NM_133182|Prmt2|15468|protein arginine N-methyltransferase 2
mm9_v1_chr12_+_8928949_8929068	1.24744	NHLH1,2.p2	
mm9_v1_chr16_+_37868418_37868496	1.24637	NHLH1,2.p2	AK090204|Lrrc58|320184|leucine rich repeat containing 58	AK049274|Lrrc58|320184|leucine rich repeat containing 58	NM_177093|Lrrc58|320184|leucine rich repeat containing 58
mm9_v1_chr18_+_23910833_23910892	1.24412	NHLH1,2.p2	AK158570|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	NM_001162942|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK168834|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr10_+_61111426_61111478	1.24342	NHLH1,2.p2	BC010468|Ppa1|67895|pyrophosphatase (inorganic) 1	CT010203|Ppa1|67895|pyrophosphatase (inorganic) 1
mm9_v1_chr10_-_9620837_9620892	1.24115	NHLH1,2.p2	NM_001081344|Stxbp5|78808|syntaxin binding protein 5 (tomosyn)
mm9_v1_chr7_-_133942605_133942705	1.2411	NHLH1,2.p2	Y00516|Aldoa|11674|aldolase A, fructose-bisphosphate	BC043026|Aldoa|11674|aldolase A, fructose-bisphosphate	EF662060|Aldoa|11674|aldolase A, fructose-bisphosphate	AK145639|Aldoa|11674|aldolase A, fructose-bisphosphate	AK002561|Aldoa|11674|aldolase A, fructose-bisphosphate	AK162290|Aldoa|11674|aldolase A, fructose-bisphosphate	BC066218|Aldoa|11674|aldolase A, fructose-bisphosphate	BC066801|Aldoa|11674|aldolase A, fructose-bisphosphate	BC050896|Aldoa|11674|aldolase A, fructose-bisphosphate	NM_001177307|Aldoa|11674|aldolase A, fructose-bisphosphate	BC089495|Aldoa|11674|aldolase A, fructose-bisphosphate
mm9_v1_chr17_+_25032885_25032933	1.23955	NHLH1,2.p2	AK181947|Mrps34|79044|mitochondrial ribosomal protein S34
mm9_v1_chr2_+_150612469_150612531	1.23911	NHLH1,2.p2	AK169052|Pygb|110078|brain glycogen phosphorylase	AK147763|Pygb|110078|brain glycogen phosphorylase	AK032769|Pygb|110078|brain glycogen phosphorylase	AK169631|Pygb|110078|brain glycogen phosphorylase	AK134667|Pygb|110078|brain glycogen phosphorylase	AK168381|Pygb|110078|brain glycogen phosphorylase	AK142716|Pygb|110078|brain glycogen phosphorylase	BC031457|Pygb|110078|brain glycogen phosphorylase	BC035283|Pygb|110078|brain glycogen phosphorylase	NM_153781|Pygb|110078|brain glycogen phosphorylase
mm9_v1_chr13_-_54795224_54795305	1.23742	NHLH1,2.p2	
mm9_v1_chr3_+_146067605_146067687	1.23725	NHLH1,2.p2	AK049080|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	AK173064|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	AK031356|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	BC031527|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	BC021749|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	NM_138744|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	AK043865|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein
mm9_v1_chr7_-_27963760_27963951	1.237	NHLH1,2.p2	AB232592|Rab4b|19342|RAB4B, member RAS oncogene family	AK140513|Rab4b|19342|RAB4B, member RAS oncogene family	BC007147|Rab4b|19342|RAB4B, member RAS oncogene family	AF408432|Rab4b|19342|RAB4B, member RAS oncogene family	BC096654|Rab4b|19342|RAB4B, member RAS oncogene family	AK005314|Rab4b|19342|RAB4B, member RAS oncogene family	NM_029391|Rab4b|19342|RAB4B, member RAS oncogene family	AK170552|Rab4b|19342|RAB4B, member RAS oncogene family
mm9_v1_chr15_-_36723995_36724005	1.23619	NHLH1,2.p2	BC050891|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr8_-_107995282_107995321	1.23352	NHLH1,2.p2	AK009771|Tppp3|67971|tubulin polymerization-promoting protein family member 3	AK012437|Tppp3|67971|tubulin polymerization-promoting protein family member 3	AK155018|Tppp3|67971|tubulin polymerization-promoting protein family member 3	AK160507|Tppp3|67971|tubulin polymerization-promoting protein family member 3	NM_026481|Tppp3|67971|tubulin polymerization-promoting protein family member 3
mm9_v1_chr9_+_20986009_20986074	1.23258	NHLH1,2.p2	BC044786|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chr9_+_68501551_68501608	1.23236	NHLH1,2.p2	AK086033|Rora|19883|RAR-related orphan receptor alpha	NM_013646|Rora|19883|RAR-related orphan receptor alpha	U53228|Rora|19883|RAR-related orphan receptor alpha
mm9_v1_chr2_-_152777135_152777317	1.23148	NHLH1,2.p2	BC116841|Dusp15|252864|dual specificity phosphatase-like 15	BC116843|Dusp15|252864|dual specificity phosphatase-like 15	BC144711|Dusp15|252864|dual specificity phosphatase-like 15	AF357887|Dusp15|252864|dual specificity phosphatase-like 15	NM_145744|Dusp15|252864|dual specificity phosphatase-like 15	NM_001159376|Dusp15|252864|dual specificity phosphatase-like 15
mm9_v1_chr5_+_130555291_130555503	1.23127	NHLH1,2.p2	AK150753|Tpst1|22021|protein-tyrosine sulfotransferase 1	NM_001130476|Tpst1|22021|protein-tyrosine sulfotransferase 1	BC012666|Tpst1|22021|protein-tyrosine sulfotransferase 1
mm9_v1_chr3_-_10440061_10440125	1.23089	NHLH1,2.p2	BC070431|Snx16|74718|sorting nexin 16	AK032055|Snx16|74718|sorting nexin 16	AK015872|Snx16|74718|sorting nexin 16	AK043975|Snx16|74718|sorting nexin 16	AK166422|Snx16|74718|sorting nexin 16	NM_001127191|Snx16|74718|sorting nexin 16	NM_029068|Snx16|74718|sorting nexin 16
mm9_v1_chr11_+_97311458_97311517	1.2299	NHLH1,2.p2	NM_021493|Arhgap23|58996|Rho GTPase activating protein 23
mm9_v1_chr12_-_81744771_81744855	1.22867	NHLH1,2.p2	BC107315|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC107316|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC132421|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC132423|Erh|13877|enhancer of rudimentary homolog (Drosophila)	U66870|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC099476|Erh|13877|enhancer of rudimentary homolog (Drosophila)	U01140|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC083141|Erh|13877|enhancer of rudimentary homolog (Drosophila)	AK171834|Erh|13877|enhancer of rudimentary homolog (Drosophila)	AK010451|Erh|13877|enhancer of rudimentary homolog (Drosophila)	D73368|Erh|13877|enhancer of rudimentary homolog (Drosophila)	AK168188|Erh|13877|enhancer of rudimentary homolog (Drosophila)	AK080617|Erh|13877|enhancer of rudimentary homolog (Drosophila)	NM_007951|Erh|13877|enhancer of rudimentary homolog (Drosophila)
mm9_v1_chr17_+_25864702_25864739	1.22866	NHLH1,2.p2	BC018186|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1
mm9_v1_chr12_+_52694307_52694441	1.22731	NHLH1,2.p2	AK137336|Coch|12810|coagulation factor C homolog (Limulus polyphemus)	NM_001198835|Coch|12810|coagulation factor C homolog (Limulus polyphemus)	NM_007728|Coch|12810|coagulation factor C homolog (Limulus polyphemus)	AF006741|Coch|12810|coagulation factor C homolog (Limulus polyphemus)	AK171875|Coch|12810|coagulation factor C homolog (Limulus polyphemus)	AK156430|Coch|12810|coagulation factor C homolog (Limulus polyphemus)	BC045137|Coch|12810|coagulation factor C homolog (Limulus polyphemus)	AK028690|Coch|12810|coagulation factor C homolog (Limulus polyphemus)
mm9_v1_chr8_+_15011221_15011301	1.22715	NHLH1,2.p2	AK019339|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11
mm9_v1_chr14_-_51550327_51550600	1.225	NHLH1,2.p2	BC049945|Tmem55b|219024|transmembrane protein 55b	BC039161|Tmem55b|219024|transmembrane protein 55b	BC058171|Tmem55b|219024|transmembrane protein 55b	BC106163|Tmem55b|219024|transmembrane protein 55b	AK152640|Tmem55b|219024|transmembrane protein 55b	AK152658|Tmem55b|219024|transmembrane protein 55b	AK144251|Tmem55b|219024|transmembrane protein 55b	NM_001033271|Tmem55b|219024|transmembrane protein 55b	AK159641|Tmem55b|219024|transmembrane protein 55b	AK169026|Tmem55b|219024|transmembrane protein 55b	BC027355|Tmem55b|219024|transmembrane protein 55b
mm9_v1_chr9_-_103965405_103965479	1.22381	NHLH1,2.p2	AK151823|Uba5|66663|ubiquitin-like modifier activating enzyme 5	AK077825|Uba5|66663|ubiquitin-like modifier activating enzyme 5	AK168907|Uba5|66663|ubiquitin-like modifier activating enzyme 5	AK152029|Uba5|66663|ubiquitin-like modifier activating enzyme 5	AK017787|Uba5|66663|ubiquitin-like modifier activating enzyme 5	NM_025692|Uba5|66663|ubiquitin-like modifier activating enzyme 5
mm9_v1_chr2_-_171868868_171868965	1.22287	NHLH1,2.p2	BC094540|Cbln4|228942|cerebellin 4 precursor protein	AK032621|Cbln4|228942|cerebellin 4 precursor protein	NM_175631|Cbln4|228942|cerebellin 4 precursor protein
mm9_v1_chr5_-_149363989_149364264	1.22079	NHLH1,2.p2	BC025595|Ubl3|24109|ubiquitin-like 3	AK145952|Ubl3|24109|ubiquitin-like 3
mm9_v1_chr11_-_120410992_120411040	1.21838	NHLH1,2.p2	BC025536|Fam195b|192173|family with sequence similarity 195, member B	AK147780|Fam195b|192173|family with sequence similarity 195, member B	NM_001033231|Fam195b|192173|family with sequence similarity 195, member B
mm9_v1_chr1_-_193141946_193142025	1.21798	NHLH1,2.p2	AB126218|Nenf|66208|neuron derived neurotrophic factor	AK020403|Nenf|66208|neuron derived neurotrophic factor	AK004329|Nenf|66208|neuron derived neurotrophic factor	BC048464|Nenf|66208|neuron derived neurotrophic factor	AK009304|Nenf|66208|neuron derived neurotrophic factor	AK155319|Nenf|66208|neuron derived neurotrophic factor	AK002413|Nenf|66208|neuron derived neurotrophic factor	NM_025424|Nenf|66208|neuron derived neurotrophic factor
mm9_v1_chr10_+_57351786_57351901	1.21238	NHLH1,2.p2	L02241|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039051|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_008863|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK005281|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK089677|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK083875|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK156851|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK157521|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK171359|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK156950|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific
mm9_v1_chr11_-_70501586_70501625	1.21222	NHLH1,2.p2	NM_001190376|Camta2|216874|calmodulin binding transcription activator 2	NM_001190378|Camta2|216874|calmodulin binding transcription activator 2	NM_001190379|Camta2|216874|calmodulin binding transcription activator 2	NM_178116|Camta2|216874|calmodulin binding transcription activator 2
mm9_v1_chr7_+_133966816_133966816	1.2118	NHLH1,2.p2	AK131642|Fam57b|68952|family with sequence similarity 57, member B	NM_029978|Fam57b|68952|family with sequence similarity 57, member B
mm9_v1_chr15_-_66332402_66332471	1.21046	NHLH1,2.p2	AF092208|Lrrc6|54562|leucine rich repeat containing 6 (testis)	BC046277|Lrrc6|54562|leucine rich repeat containing 6 (testis)	AK077124|Lrrc6|54562|leucine rich repeat containing 6 (testis)	AK016236|Lrrc6|54562|leucine rich repeat containing 6 (testis)	NM_019457|Lrrc6|54562|leucine rich repeat containing 6 (testis)
mm9_v1_chr19_+_23215704_23215723	1.20936	NHLH1,2.p2	AK028544|Klf9|16601|Kruppel-like factor 9	NM_010638|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr2_+_163820920_163821078	1.20789	NHLH1,2.p2	AK150414|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK151294|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK004872|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK011389|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	NM_018753|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AF058797|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK083367|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK158932|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK204033|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC132121|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC138512|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr6_-_57485419_57485488	1.20661	NHLH1,2.p2	BC092238|Ppm1k|243382|protein phosphatase 1K (PP2C domain containing)	NM_175523|Ppm1k|243382|protein phosphatase 1K (PP2C domain containing)	AK044610|Ppm1k|243382|protein phosphatase 1K (PP2C domain containing)
mm9_v1_chr19_-_7557553_7557640	1.20646	NHLH1,2.p2	AY507126|Rtn3|20168|reticulon 3	AK146505|Rtn3|20168|reticulon 3
mm9_v1_chr14_+_9046655_9046821	1.20561	NHLH1,2.p2	AK082924|Kctd6|71393|potassium channel tetramerisation domain containing 6	AK017384|Kctd6|71393|potassium channel tetramerisation domain containing 6	NM_027782|Kctd6|71393|potassium channel tetramerisation domain containing 6	BC096370|Kctd6|71393|potassium channel tetramerisation domain containing 6
mm9_v1_chr2_+_179777418_179777493	1.20558	NHLH1,2.p2	AK173004|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1	AK054560|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1	AK038669|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1
mm9_v1_chr1_-_175297624_175297771	1.20237	NHLH1,2.p2	AY059393|Cadm3|94332|cell adhesion molecule 3	BC115417|Cadm3|94332|cell adhesion molecule 3	BC115418|Cadm3|94332|cell adhesion molecule 3	BC079837|Cadm3|94332|cell adhesion molecule 3	AF195662|Cadm3|94332|cell adhesion molecule 3
mm9_v1_chr17_+_26339883_26339926	1.20204	NHLH1,2.p2	AK080707|Rgs11|50782|regulator of G-protein signaling 11	NM_001081069|Rgs11|50782|regulator of G-protein signaling 11	BC049910|Rgs11|50782|regulator of G-protein signaling 11
mm9_v1_chr13_+_46765506_46765611	1.2005	NHLH1,2.p2	AK090371|C78339|97863|expressed sequence C78339	AK218359|C78339|97863|expressed sequence C78339
mm9_v1_chr7_+_26102182_26102182	1.20012	NHLH1,2.p2	EU723517|Megf8|269878|multiple EGF-like-domains 8	NM_001160400|Megf8|269878|multiple EGF-like-domains 8
mm9_v1_chr8_-_127187033_127187121	1.19969	NHLH1,2.p2	AK084773|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	AK009458|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	AK154813|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	AK170562|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	AK155222|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene
mm9_v1_chr4_-_61869579_61869584	1.19909	NHLH1,2.p2	NM_009554|Zfp37|22696|zinc finger protein 37
mm9_v1_chrX_-_147247483_147247509	1.19856	NHLH1,2.p2	BC023319|Maged2|80884|melanoma antigen, family D, 2
mm9_v1_chr1_+_169528838_169528848	1.19574	NHLH1,2.p2	M84819|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr8_-_13974679_13974776	1.19524	NHLH1,2.p2	BC099613|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK166972|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK166875|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK077810|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC132465|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC132467|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC145286|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK163687|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	NM_173744|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene
mm9_v1_chr17_+_34742803_34742908	1.19417	NHLH1,2.p2	NM_001163379|Agpat1|55979|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	AB005623|Agpat1|55979|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	AK086281|Agpat1|55979|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)
mm9_v1_chr5_-_139801315_139801476	1.19364	NHLH1,2.p2	NM_172723|Adap1|231821|ArfGAP with dual PH domains 1
mm9_v1_chr4_-_117587421_117587631	1.19293	NHLH1,2.p2	AK149978|Ipo13|230673|importin 13	AK148263|Ipo13|230673|importin 13	AK052257|Ipo13|230673|importin 13	NM_146152|Ipo13|230673|importin 13
mm9_v1_chr10_+_79764564_79764564	1.18965	NHLH1,2.p2	NM_011789|Apc2|23805|adenomatosis polyposis coli 2
mm9_v1_chr6_-_72566691_72566744	1.18954	NHLH1,2.p2	CT010269|Tgoln1|22134|trans-golgi network protein	AK161242|Tgoln1|22134|trans-golgi network protein	AK145212|Tgoln2|22135|trans-golgi network protein 2	BC009143|Tgoln1|22134|trans-golgi network protein	BC141218|Tgoln1|22134|trans-golgi network protein	BC145542|Tgoln1|22134|trans-golgi network protein	AK133559|Tgoln1|22134|trans-golgi network protein	D50031|Tgoln1|22134|trans-golgi network protein	D50032|Tgoln2|22135|trans-golgi network protein 2	NM_009444|Tgoln2|22135|trans-golgi network protein 2	AK041302|Tgoln1|22134|trans-golgi network protein	AK162574|Tgoln1|22134|trans-golgi network protein
mm9_v1_chr17_-_23965968_23966120	1.18881	NHLH1,2.p2	BC056983|Tceb2|67673|transcription elongation factor B (SIII), polypeptide 2	BC051927|Tceb2|67673|transcription elongation factor B (SIII), polypeptide 2	AK152950|Tceb2|67673|transcription elongation factor B (SIII), polypeptide 2	AK003277|Tceb2|67673|transcription elongation factor B (SIII), polypeptide 2	AK012254|Tceb2|67673|transcription elongation factor B (SIII), polypeptide 2	AK019358|Tceb2|67673|transcription elongation factor B (SIII), polypeptide 2	AK002868|Tceb2|67673|transcription elongation factor B (SIII), polypeptide 2	NM_026305|Tceb2|67673|transcription elongation factor B (SIII), polypeptide 2	AK008534|Tceb2|67673|transcription elongation factor B (SIII), polypeptide 2	AK008477|Tceb2|67673|transcription elongation factor B (SIII), polypeptide 2	AK002223|Tceb2|67673|transcription elongation factor B (SIII), polypeptide 2	AK019181|Tceb2|67673|transcription elongation factor B (SIII), polypeptide 2	AK019218|Tceb2|67673|transcription elongation factor B (SIII), polypeptide 2
mm9_v1_chr15_-_77759356_77759437	1.1857	NHLH1,2.p2	AK167925|Txn2|56551|thioredoxin 2	U85089|Txn2|56551|thioredoxin 2	AK167754|Txn2|56551|thioredoxin 2	AK168322|Txn2|56551|thioredoxin 2	AK002358|Txn2|56551|thioredoxin 2	AK147164|Txn2|56551|thioredoxin 2	AK090199|Txn2|56551|thioredoxin 2	AK149855|Txn2|56551|thioredoxin 2	BC068182|Txn2|56551|thioredoxin 2	AK010917|Txn2|56551|thioredoxin 2	NM_019913|Txn2|56551|thioredoxin 2	AK160591|Txn2|56551|thioredoxin 2
mm9_v1_chr4_-_41587115_41587160	1.18468	NHLH1,2.p2	AK050496|Enho|69638|energy homeostasis associated
mm9_v1_chr15_-_39775173_39775370	1.18454	NHLH1,2.p2	AK050512|Lrp12|239393|low density lipoprotein-related protein 12	NM_172814|Lrp12|239393|low density lipoprotein-related protein 12
mm9_v1_chr3_+_117278144_117278545	1.18414	NHLH1,2.p2	AK032034|4833424O15Rik|75769|RIKEN cDNA 4833424O15 gene	AK082692|4833424O15Rik|75769|RIKEN cDNA 4833424O15 gene	BC031879|4833424O15Rik|75769|RIKEN cDNA 4833424O15 gene	AK076176|4833424O15Rik|75769|RIKEN cDNA 4833424O15 gene	NM_029425|4833424O15Rik|75769|RIKEN cDNA 4833424O15 gene	AK014763|4833424O15Rik|75769|RIKEN cDNA 4833424O15 gene	AK043629|4833424O15Rik|75769|RIKEN cDNA 4833424O15 gene
mm9_v1_chr10_-_22451211_22451252	1.18122	NHLH1,2.p2	NM_011603|Tbpl1|237336|TATA box binding protein-like 1
mm9_v1_chr2_+_37307751_37307773	1.18047	NHLH1,2.p2	AK044346|Rabgap1|227800|RAB GTPase activating protein 1	NM_001033960|Rabgap1|227800|RAB GTPase activating protein 1
mm9_v1_chr6_+_81991613_81991706	1.17625	NHLH1,2.p2	AK145140|Fam176a|232146|family with sequence similarity 176, member A	NM_145570|Fam176a|232146|family with sequence similarity 176, member A	BC027150|Fam176a|232146|family with sequence similarity 176, member A	AK166504|Fam176a|232146|family with sequence similarity 176, member A	BC014699|Fam176a|232146|family with sequence similarity 176, member A
mm9_v1_chr9_+_122076647_122076688	1.17252	NHLH1,2.p2	
mm9_v1_chr15_+_79921725_79921855	1.172	NHLH1,2.p2	BC138728|Syngr1|20972|synaptogyrin 1	BC138729|Syngr1|20972|synaptogyrin 1	NM_009303|Syngr1|20972|synaptogyrin 1	NM_207708|Syngr1|20972|synaptogyrin 1	AK044007|Syngr1|20972|synaptogyrin 1	AJ002306|Syngr1|20972|synaptogyrin 1	AK156134|Syngr1|20972|synaptogyrin 1	AK002972|Syngr1|20972|synaptogyrin 1	AK010442|Syngr1|20972|synaptogyrin 1	AK153096|Syngr1|20972|synaptogyrin 1	AK153187|Syngr1|20972|synaptogyrin 1	BC048172|Syngr1|20972|synaptogyrin 1	AK194549|Syngr1|20972|synaptogyrin 1
mm9_v1_chr3_-_101408495_101408631	1.17171	NHLH1,2.p2	BC033435|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC033471|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC025811|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC021496|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC025627|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC042435|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC025618|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	NM_144900|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK088000|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK137001|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK159279|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK159306|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC023794|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC032187|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide
mm9_v1_chr12_+_81745254_81745279	1.1714	NHLH1,2.p2	BC043112|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9
mm9_v1_chr11_+_101286385_101286400	1.17133	NHLH1,2.p2	AK086362|Rundc1|217201|RUN domain containing 1	BC119592|Rundc1|217201|RUN domain containing 1	BC119593|Rundc1|217201|RUN domain containing 1	NM_172566|Rundc1|217201|RUN domain containing 1
mm9_v1_chr7_+_28338239_28338353	1.17068	NHLH1,2.p2	NM_175107|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	BC023369|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene
mm9_v1_chr3_-_135086338_135086446	1.17024	NHLH1,2.p2	AK005184|Cisd2|67006|CDGSH iron sulfur domain 2	AK003486|Cisd2|67006|CDGSH iron sulfur domain 2	AK004257|Cisd2|67006|CDGSH iron sulfur domain 2	AK046746|Cisd2|67006|CDGSH iron sulfur domain 2	AK005301|Cisd2|67006|CDGSH iron sulfur domain 2	BC058279|Cisd2|67006|CDGSH iron sulfur domain 2	NM_025902|Cisd2|67006|CDGSH iron sulfur domain 2
mm9_v1_chr13_+_94541584_94541713	1.17011	NHLH1,2.p2	AK140163|Arsb|11881|arylsulfatase B	AK158312|Arsb|11881|arylsulfatase B	NM_009712|Arsb|11881|arylsulfatase B	AK083309|Arsb|11881|arylsulfatase B	BC150661|Arsb|11881|arylsulfatase B	AK154098|Arsb|11881|arylsulfatase B
mm9_v1_chr12_-_88225200_88225353	1.17	NHLH1,2.p2	BC057128|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	BC063253|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene
mm9_v1_chr12_+_77425836_77425924	1.16912	NHLH1,2.p2	AK139319|Akap5|238276|A kinase (PRKA) anchor protein 5	NM_001101471|Akap5|238276|A kinase (PRKA) anchor protein 5
mm9_v1_chr15_-_73640331_73640366	1.1691	NHLH1,2.p2	BC087907|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4
mm9_v1_chr2_+_156546758_156546851	1.16757	NHLH1,2.p2	AK089484|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK150554|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK156212|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK211649|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AF073935|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr2_+_37307786_37307807	1.1649	NHLH1,2.p2	AK029667|Rabgap1|227800|RAB GTPase activating protein 1
mm9_v1_chr6_+_86028044_86028077	1.16417	NHLH1,2.p2	AK156954|Add2|11519|adducin 2 (beta)	AK028425|Add2|11519|adducin 2 (beta)	AK014496|Add2|11519|adducin 2 (beta)	NM_013458|Add2|11519|adducin 2 (beta)
mm9_v1_chr5_-_107125783_107125868	1.16187	NHLH1,2.p2	AK053146|Zfp644|52397|zinc finger protein 644	NM_026856|Zfp644|52397|zinc finger protein 644
mm9_v1_chr5_+_115392192_115392243	1.16187	NHLH1,2.p2	AK135000|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene	BC031162|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene	NM_028211|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene	AK008740|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene	AK159360|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene
mm9_v1_chr15_-_84388245_84388282	1.16185	NHLH1,2.p2	BC094559|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like	NM_177630|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like
mm9_v1_chr5_+_34064372_34064491	1.16169	NHLH1,2.p2	NM_008010|Fgfr3|14184|fibroblast growth factor receptor 3	NM_001163215|Fgfr3|14184|fibroblast growth factor receptor 3	AK143592|Fgfr3|14184|fibroblast growth factor receptor 3	BC053056|Fgfr3|14184|fibroblast growth factor receptor 3	M81342|Fgfr3|14184|fibroblast growth factor receptor 3	X58255|Fgfr3|14184|fibroblast growth factor receptor 3
mm9_v1_chr9_+_43892984_43893007	1.16066	NHLH1,2.p2	NM_198091|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr2_+_119176963_119176993	1.1573	NHLH1,2.p2	NM_026929|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)	AK032218|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)
mm9_v1_chr7_+_28043864_28043895	1.15662	NHLH1,2.p2	U96441|Numbl|18223|numb-like
mm9_v1_chr7_-_133225924_133225942	1.15511	NHLH1,2.p2	AK082731|Gsg1l|269994|GSG1-like	NM_001101488|Gsg1l|269994|GSG1-like
mm9_v1_chr7_-_51920870_51920872	1.15511	NHLH1,2.p2	AY205605|Myh14|71960|myosin, heavy polypeptide 14	EF602040|Myh14|71960|myosin, heavy polypeptide 14	NM_028021|Myh14|71960|myosin, heavy polypeptide 14
mm9_v1_chr10_-_114238419_114238425	1.15461	NHLH1,2.p2	BC032288|Trhde|237553|TRH-degrading enzyme	AK085724|Trhde|237553|TRH-degrading enzyme	NM_146241|Trhde|237553|TRH-degrading enzyme
mm9_v1_chr5_-_124545759_124545774	1.1546	NHLH1,2.p2	BC053014|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9
mm9_v1_chr18_-_36614140_36614187	1.15346	NHLH1,2.p2	BC094627|Pfdn1|67199|prefoldin 1	AK002575|Pfdn1|67199|prefoldin 1	AK012575|Pfdn1|67199|prefoldin 1	NM_026027|Pfdn1|67199|prefoldin 1	AK028148|Pfdn1|67199|prefoldin 1	AK010532|Pfdn1|67199|prefoldin 1	AK003330|Pfdn1|67199|prefoldin 1	BC024693|Pfdn1|67199|prefoldin 1
mm9_v1_chr12_+_114214947_114214965	1.15281	NHLH1,2.p2	AK146991|Btbd6|399566|BTB (POZ) domain containing 6
mm9_v1_chr2_+_151368197_151368330	1.15236	NHLH1,2.p2	NM_008019|Fkbp1a|14225|FK506 binding protein 1a	AK019362|Fkbp1a|14225|FK506 binding protein 1a	AK010693|Fkbp1a|14225|FK506 binding protein 1a	AK145400|Fkbp1a|14225|FK506 binding protein 1a	AK169242|Fkbp1a|14225|FK506 binding protein 1a	AK141261|Fkbp1a|14225|FK506 binding protein 1a	AK168333|Fkbp1a|14225|FK506 binding protein 1a
mm9_v1_chr3_-_115956312_115956401	1.15107	NHLH1,2.p2	BC029939|Gpr88|64378|G-protein coupled receptor 88	AB042408|Gpr88|64378|G-protein coupled receptor 88	NM_022427|Gpr88|64378|G-protein coupled receptor 88
mm9_v1_chr9_+_20970150_20970317	1.14948	NHLH1,2.p2	AK153657|Pde4a|18577|phosphodiesterase 4A, cAMP specific	NM_183408|Pde4a|18577|phosphodiesterase 4A, cAMP specific	BC139405|Pde4a|18577|phosphodiesterase 4A, cAMP specific	BC139408|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chr2_-_32837527_32837604	1.14818	NHLH1,2.p2	AF232061|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856043|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856044|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856045|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856046|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AJ245936|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	Y17802|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	BC090993|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	NM_019488|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK141193|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK170319|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK081806|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK155792|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8
mm9_v1_chr2_+_174124429_174124433	1.14754	NHLH1,2.p2	AK030489|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK047990|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AF116268|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr17_+_25970057_25970093	1.14648	NHLH1,2.p2	AK009713|Stub1|56424|STIP1 homology and U-Box containing protein 1
mm9_v1_chr14_-_14953416_14953474	1.14647	NHLH1,2.p2	BC006869|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	NM_025550|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	AK002343|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	AK010287|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	AJ252147|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
mm9_v1_chr15_-_44584003_44584003	1.14639	NHLH1,2.p2	AB232449|Sybu|319613|syntabulin (syntaxin-interacting)	BC065045|Sybu|319613|syntabulin (syntaxin-interacting)	NM_178765|Sybu|319613|syntabulin (syntaxin-interacting)
mm9_v1_chr19_-_33466561_33466800	1.14563	NHLH1,2.p2	DQ788834|Rnls|67795|renalase, FAD-dependent amine oxidase	BC052355|Rnls|67795|renalase, FAD-dependent amine oxidase	AK014866|Rnls|67795|renalase, FAD-dependent amine oxidase	AK018322|Rnls|67795|renalase, FAD-dependent amine oxidase	AK170321|Rnls|67795|renalase, FAD-dependent amine oxidase	NM_001146342|Rnls|67795|renalase, FAD-dependent amine oxidase	NM_001167818|Rnls|67795|renalase, FAD-dependent amine oxidase
mm9_v1_chr15_-_101947088_101947134	1.14404	NHLH1,2.p2	
mm9_v1_chr12_-_99497498_99497616	1.14323	NHLH1,2.p2	AK077475|Galc|14420|galactosylceramidase	BC065140|Galc|14420|galactosylceramidase	BC086671|Galc|14420|galactosylceramidase	NM_008079|Galc|14420|galactosylceramidase	AK165478|Galc|14420|galactosylceramidase	D38557|Galc|14420|galactosylceramidase
mm9_v1_chr5_-_68238603_68238652	1.1405	NHLH1,2.p2	AK141559|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503478|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK076388|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK045367|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr15_-_97597988_97598129	1.13884	NHLH1,2.p2	AK142594|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	AK044566|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	AK169430|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	AK162003|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	BC020532|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	NM_001177810|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	NM_001177811|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	NM_144850|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3
mm9_v1_chr8_+_15011024_15011024	1.13653	NHLH1,2.p2	AK013531|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11	NM_029116|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11
mm9_v1_chrX_-_34442837_34442864	1.13577	NHLH1,2.p2	AK020455|Nkrf|77286|NF-kappaB repressing factor	BC138828|Nkrf|77286|NF-kappaB repressing factor	BC138829|Nkrf|77286|NF-kappaB repressing factor
mm9_v1_chr16_-_44333103_44333308	1.13349	NHLH1,2.p2	AK171920|Sidt1|320007|SID1 transmembrane family, member 1	AK172408|Sidt1|320007|SID1 transmembrane family, member 1	AK171897|Sidt1|320007|SID1 transmembrane family, member 1	AK047199|Sidt1|320007|SID1 transmembrane family, member 1	AK046836|Sidt1|320007|SID1 transmembrane family, member 1
mm9_v1_chr19_-_59150558_59150589	1.13344	NHLH1,2.p2	AK082304|4930506M07Rik|71653|RIKEN cDNA 4930506M07 gene	NM_001114312|4930506M07Rik|71653|RIKEN cDNA 4930506M07 gene	NM_175172|4930506M07Rik|71653|RIKEN cDNA 4930506M07 gene	AK220405|4930506M07Rik|71653|RIKEN cDNA 4930506M07 gene
mm9_v1_chr9_-_103965323_103965336	1.13184	NHLH1,2.p2	BC019764|Uba5|66663|ubiquitin-like modifier activating enzyme 5
mm9_v1_chr9_-_31019392_31019409	1.13179	NHLH1,2.p2	AK013376|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	Z27070|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK149977|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK150020|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK087459|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK160471|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	NM_001102455|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	NM_001102456|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	NM_009691|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	Z22592|Aplp2|11804|amyloid beta (A4) precursor-like protein 2
mm9_v1_chr12_+_72932132_72932152	1.13115	NHLH1,2.p2	BC047431|Daam1|208846|dishevelled associated activator of morphogenesis 1	AK053785|Daam1|208846|dishevelled associated activator of morphogenesis 1	AY426535|Daam1|208846|dishevelled associated activator of morphogenesis 1
mm9_v1_chr11_+_29273673_29273774	1.13037	NHLH1,2.p2	AK051140|Ccdc88a|108686|coiled coil domain containing 88A	NM_176841|Ccdc88a|108686|coiled coil domain containing 88A
mm9_v1_chr5_-_135727086_135727099	1.12985	NHLH1,2.p2	AK021164|Fzd9|14371|frizzled homolog 9 (Drosophila)
mm9_v1_chr15_-_64214427_64214520	1.12929	NHLH1,2.p2	BC094581|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1	NM_010026|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1
mm9_v1_chr16_-_45724422_45724643	1.12926	NHLH1,2.p2	BC043027|Tagln3|56370|transgelin 3	AB031291|Tagln3|56370|transgelin 3	AK013484|Tagln3|56370|transgelin 3	BC055338|Tagln3|56370|transgelin 3	NM_019754|Tagln3|56370|transgelin 3
mm9_v1_chr15_+_98957150_98957201	1.12909	NHLH1,2.p2	AK159335|Spats2|72572|spermatogenesis associated, serine-rich 2
mm9_v1_chr8_-_67373608_67373666	1.12823	NHLH1,2.p2	AK167903|Klhl2|77113|kelch-like 2, Mayven (Drosophila)
mm9_v1_chr10_+_114822056_114822157	1.1249	NHLH1,2.p2	BC139124|Zfc3h1|216345|zinc finger, C3H1-type containing
mm9_v1_chr2_-_134469806_134469920	1.12252	NHLH1,2.p2	BC138168|Tmx4|52837|thioredoxin-related transmembrane protein 4	BC138169|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK040779|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK147465|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK129301|Tmx4|52837|thioredoxin-related transmembrane protein 4	BC054558|Tmx4|52837|thioredoxin-related transmembrane protein 4	NM_029148|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK015667|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK053897|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK030696|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK172572|Tmx4|52837|thioredoxin-related transmembrane protein 4
mm9_v1_chr11_-_116007231_116007289	1.12041	NHLH1,2.p2	AK004058|Fbf1|217335|Fas (TNFRSF6) binding factor 1
mm9_v1_chr2_-_140497116_140497135	1.11521	NHLH1,2.p2	AK129369|Flrt3|71436|fibronectin leucine rich transmembrane protein 3
mm9_v1_chr2_+_119177025_119177036	1.10986	NHLH1,2.p2	AK007378|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)	BC025169|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)
mm9_v1_chr4_+_125939573_125939621	1.10799	NHLH1,2.p2	AK168518|Trappc3|27096|trafficking protein particle complex 3
mm9_v1_chr13_-_100785524_100785589	1.10764	NHLH1,2.p2	BC027640|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK146865|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK145564|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK146844|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	BC141193|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	BC141194|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK132265|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
mm9_v1_chr16_-_8672242_8672250	1.1059	NHLH1,2.p2	AK170411|Carhsp1|52502|calcium regulated heat stable protein 1	AK002853|Carhsp1|52502|calcium regulated heat stable protein 1	AK004711|Carhsp1|52502|calcium regulated heat stable protein 1	AK143612|Carhsp1|52502|calcium regulated heat stable protein 1	AK154460|Carhsp1|52502|calcium regulated heat stable protein 1	AK168504|Carhsp1|52502|calcium regulated heat stable protein 1	NM_025821|Carhsp1|52502|calcium regulated heat stable protein 1	AK003926|Carhsp1|52502|calcium regulated heat stable protein 1	AK149875|Carhsp1|52502|calcium regulated heat stable protein 1	AK155318|Carhsp1|52502|calcium regulated heat stable protein 1	AK158112|Carhsp1|52502|calcium regulated heat stable protein 1	AK158252|Carhsp1|52502|calcium regulated heat stable protein 1	AK165373|Carhsp1|52502|calcium regulated heat stable protein 1	AK171282|Carhsp1|52502|calcium regulated heat stable protein 1
mm9_v1_chr17_-_46888942_46888996	1.1046	NHLH1,2.p2	AK220209|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK031742|Cnpy3|72029|canopy 3 homolog (zebrafish)
mm9_v1_chr12_-_81537261_81537482	1.10348	NHLH1,2.p2	BC042567|Dcaf5|320808|DDB1 and CUL4 associated factor 5	AK122561|Dcaf5|320808|DDB1 and CUL4 associated factor 5
mm9_v1_chr4_-_107973656_107973675	1.10339	NHLH1,2.p2	AK162646|Zyg11b|414872|zyg-ll homolog B (C. elegans)	BC117977|Zyg11b|414872|zyg-ll homolog B (C. elegans)	BC117978|Zyg11b|414872|zyg-ll homolog B (C. elegans)	BC139383|Zyg11b|414872|zyg-ll homolog B (C. elegans)	BC139384|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK145130|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK166031|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK166174|Zyg11b|414872|zyg-ll homolog B (C. elegans)
mm9_v1_chr4_+_5571316_5571381	1.10297	NHLH1,2.p2	AK159054|Fam110b|242297|family with sequence similarity 110, member B	AK163184|Fam110b|242297|family with sequence similarity 110, member B	AK052596|Fam110b|242297|family with sequence similarity 110, member B	NM_173426|Fam110b|242297|family with sequence similarity 110, member B	AK005911|Fam110b|242297|family with sequence similarity 110, member B
mm9_v1_chr19_+_41986360_41986656	1.10197	NHLH1,2.p2	NM_023418|Pgam1|18648|phosphoglycerate mutase 1	BC002241|Pgam1|18648|phosphoglycerate mutase 1	BC106139|Pgam1|18648|phosphoglycerate mutase 1	BC005661|Pgam1|18648|phosphoglycerate mutase 1	AF283667|Pgam1|18648|phosphoglycerate mutase 1	AK004921|Pgam1|18648|phosphoglycerate mutase 1	AK009905|Pgam1|18648|phosphoglycerate mutase 1	AK144681|Pgam1|18648|phosphoglycerate mutase 1	AK153202|Pgam1|18648|phosphoglycerate mutase 1	AK159305|Pgam1|18648|phosphoglycerate mutase 1	AK150716|Pgam1|18648|phosphoglycerate mutase 1	AK152443|Pgam1|18648|phosphoglycerate mutase 1	AK165410|Pgam1|18648|phosphoglycerate mutase 1	AK168949|Pgam1|18648|phosphoglycerate mutase 1	BC083090|Pgam1|18648|phosphoglycerate mutase 1	BC066844|Pgam1|18648|phosphoglycerate mutase 1
mm9_v1_chr17_-_46889082_46889212	1.10061	NHLH1,2.p2	AK086940|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK143428|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK010702|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK005532|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK049358|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK141306|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK082340|Cnpy3|72029|canopy 3 homolog (zebrafish)	AF361644|Cnpy3|72029|canopy 3 homolog (zebrafish)	BC013549|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK085617|Cnpy3|72029|canopy 3 homolog (zebrafish)	NM_028065|Cnpy3|72029|canopy 3 homolog (zebrafish)
mm9_v1_chr7_-_151627653_151627692	1.09927	NHLH1,2.p2	AK180662|Cttn|13043|cortactin	AK185163|Cttn|13043|cortactin	AK207194|Cttn|13043|cortactin
mm9_v1_chr7_-_51746246_51746260	1.09907	NHLH1,2.p2	AK206197|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK208212|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK215955|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK216646|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene
mm9_v1_chr9_-_103664100_103664222	1.09904	NHLH1,2.p2	BC052085|Tmem108|81907|transmembrane protein 108	AK077586|Tmem108|81907|transmembrane protein 108	AK044989|Tmem108|81907|transmembrane protein 108	AK047474|Tmem108|81907|transmembrane protein 108	AK086266|Tmem108|81907|transmembrane protein 108	AK141589|Tmem108|81907|transmembrane protein 108	AK052330|Tmem108|81907|transmembrane protein 108	NM_178638|Tmem108|81907|transmembrane protein 108
mm9_v1_chr19_-_7062118_7062180	1.09883	NHLH1,2.p2	BC046303|Vegfb|22340|vascular endothelial growth factor B	AK148188|Vegfb|22340|vascular endothelial growth factor B	NM_001185164|Vegfb|22340|vascular endothelial growth factor B	NM_011697|Vegfb|22340|vascular endothelial growth factor B
mm9_v1_chr9_-_14650214_14650214	1.09875	NHLH1,2.p2	NM_001111330|Gm16379|100040259|predicted pseudogene 16379
mm9_v1_chr2_+_102390226_102390305	1.09773	NHLH1,2.p2	AK035434|Pamr1|210622|peptidase domain containing associated with muscle regeneration 1	AK088017|Pamr1|210622|peptidase domain containing associated with muscle regeneration 1	AK031254|Pamr1|210622|peptidase domain containing associated with muscle regeneration 1
mm9_v1_chr7_+_16701811_16702117	1.09773	NHLH1,2.p2	AK078019|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK215640|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK198211|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK199113|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha
mm9_v1_chr4_+_128814102_128814307	1.09722	NHLH1,2.p2	AK005096|Fndc5|384061|fibronectin type III domain containing 5	AJ401376|Fndc5|384061|fibronectin type III domain containing 5	BC109184|Fndc5|384061|fibronectin type III domain containing 5	NM_027402|Fndc5|384061|fibronectin type III domain containing 5	BC109183|Fndc5|384061|fibronectin type III domain containing 5
mm9_v1_chr7_-_117758413_117758468	1.09551	NHLH1,2.p2	BC048706|Sbf2|319934|SET binding factor 2	AK080963|Sbf2|319934|SET binding factor 2	AK087396|Sbf2|319934|SET binding factor 2	AK080952|Sbf2|319934|SET binding factor 2	NM_177324|Sbf2|319934|SET binding factor 2	AK046622|Sbf2|319934|SET binding factor 2
mm9_v1_chr11_+_59476016_59476061	1.09062	NHLH1,2.p2	BC063067|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr1_+_91351435_91351522	1.08954	NHLH1,2.p2	BC096588|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm9_v1_chr8_+_13159279_13159395	1.08752	NHLH1,2.p2	M25244|Lamp1|16783|lysosomal-associated membrane protein 1	AK159376|Lamp1|16783|lysosomal-associated membrane protein 1	M32015|Lamp1|16783|lysosomal-associated membrane protein 1
mm9_v1_chr14_-_65059694_65059876	1.08527	NHLH1,2.p2	AK002356|Msra|110265|methionine sulfoxide reductase A	AK009822|Msra|110265|methionine sulfoxide reductase A	AK030278|Msra|110265|methionine sulfoxide reductase A	BC014738|Msra|110265|methionine sulfoxide reductase A	AK049714|Msra|110265|methionine sulfoxide reductase A
mm9_v1_chrX_-_130223380_130223542	1.08369	NHLH1,2.p2	AK046726|Pcdh19|279653|protocadherin 19	NM_001105245|Pcdh19|279653|protocadherin 19	NM_001105246|Pcdh19|279653|protocadherin 19
mm9_v1_chrX_-_16488889_16488889	1.08367	NHLH1,2.p2	BC090623|Ndp|17986|Norrie disease (pseudoglioma) (human)	NM_010883|Ndp|17986|Norrie disease (pseudoglioma) (human)
mm9_v1_chr7_+_150255257_150255421	1.08056	NHLH1,2.p2	AB041597|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	AB038011|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	AJ279796|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	AJ279797|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	NM_001115085|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	NM_020285|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	NM_138631|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	AK088052|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4
mm9_v1_chr12_+_112512884_112512979	1.08003	NHLH1,2.p2	AK088429|Amn|93835|amnionless
mm9_v1_chr5_+_121099226_121099366	1.07811	NHLH1,2.p2	AK156050|Rasal1|19415|RAS protein activator like 1 (GAP1 like)	AF086714|Rasal1|19415|RAS protein activator like 1 (GAP1 like)
mm9_v1_chr1_-_168339909_168339980	1.07482	NHLH1,2.p2	AK031716|Pogk|71592|pogo transposable element with KRAB domain	BC072587|Pogk|71592|pogo transposable element with KRAB domain	AK048067|Pogk|71592|pogo transposable element with KRAB domain	AK048752|Pogk|71592|pogo transposable element with KRAB domain	AK053898|Pogk|71592|pogo transposable element with KRAB domain	NM_001142948|Pogk|71592|pogo transposable element with KRAB domain	NM_175170|Pogk|71592|pogo transposable element with KRAB domain
mm9_v1_chr19_+_7495023_7495107	1.07437	NHLH1,2.p2	BC096549|2700081O15Rik|108899|RIKEN cDNA 2700081O15 gene	BC096638|2700081O15Rik|108899|RIKEN cDNA 2700081O15 gene
mm9_v1_chr2_-_118529608_118529698	1.07406	NHLH1,2.p2	NM_001081971|Gm1337|383787|predicted gene 1337
mm9_v1_chr7_+_119571219_119571592	1.07401	NHLH1,2.p2	BC059236|Parva|57342|parvin, alpha	NM_020606|Parva|57342|parvin, alpha	AB045321|Parva|57342|parvin, alpha	AF237774|Parva|57342|parvin, alpha	AK162796|Parva|57342|parvin, alpha	AK076473|Parva|57342|parvin, alpha	AF264766|Parva|57342|parvin, alpha	BC039750|Parva|57342|parvin, alpha
mm9_v1_chr9_+_21397379_21397470	1.07156	NHLH1,2.p2	AK088045|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	AK089121|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	BC025883|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	AK034762|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene
mm9_v1_chr5_+_107760177_107760212	1.06965	NHLH1,2.p2	AF358660|Brdt|114642|bromodomain, testis-specific	AK077137|Brdt|114642|bromodomain, testis-specific	NM_001079873|Brdt|114642|bromodomain, testis-specific	NM_054054|Brdt|114642|bromodomain, testis-specific
mm9_v1_chr7_+_146574969_146575035	1.06958	NHLH1,2.p2	BC056341|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	NM_001127363|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	NM_183144|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	AK083449|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	AK171360|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	AK171880|Inpp5a|212111|inositol polyphosphate-5-phosphatase A
mm9_v1_chr14_-_41827037_41827078	1.06956	NHLH1,2.p2	BC056635|5730469M10Rik|70564|RIKEN cDNA 5730469M10 gene	AK017688|5730469M10Rik|70564|RIKEN cDNA 5730469M10 gene	NM_027464|5730469M10Rik|70564|RIKEN cDNA 5730469M10 gene	AK156326|5730469M10Rik|70564|RIKEN cDNA 5730469M10 gene
mm9_v1_chr17_+_73186891_73186925	1.06879	NHLH1,2.p2	AK154461|Ypel5|383295|yippee-like 5 (Drosophila)
mm9_v1_chr16_+_18066494_18066561	1.06443	NHLH1,2.p2	BC048503|Dgcr6|13353|DiGeorge syndrome critical region gene 6
mm9_v1_chr1_-_191746072_191746205	1.06166	NHLH1,2.p2	AK197062|Smyd2|226830|SET and MYND domain containing 2	AK204951|Smyd2|226830|SET and MYND domain containing 2	AK164053|Smyd2|226830|SET and MYND domain containing 2	BC023119|Smyd2|226830|SET and MYND domain containing 2	NM_026796|Smyd2|226830|SET and MYND domain containing 2	AK145261|Smyd2|226830|SET and MYND domain containing 2	AK150857|Smyd2|226830|SET and MYND domain containing 2
mm9_v1_chr14_+_76815627_76815627	1.0612	NHLH1,2.p2	BC058660|Tsc22d1|21807|TSC22 domain family, member 1	NM_207652|Tsc22d1|21807|TSC22 domain family, member 1
mm9_v1_chr4_+_129662284_129662511	1.06041	NHLH1,2.p2	BC056926|Bai2|230775|brain-specific angiogenesis inhibitor 2	NM_173071|Bai2|230775|brain-specific angiogenesis inhibitor 2	AK158735|Bai2|230775|brain-specific angiogenesis inhibitor 2
mm9_v1_chr16_+_18066571_18066594	1.05622	NHLH1,2.p2	AF021031|Dgcr6|13353|DiGeorge syndrome critical region gene 6
mm9_v1_chr13_-_95992547_95992641	1.05618	NHLH1,2.p2	AK083166|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr13_-_55589463_55589528	1.05575	NHLH1,2.p2	BC006714|Dbn1|56320|drebrin 1
mm9_v1_chr11_-_83882063_83882095	1.0538	NHLH1,2.p2	AK166840|Dusp14|56405|dual specificity phosphatase 14	BC052836|Dusp14|56405|dual specificity phosphatase 14
mm9_v1_chr7_-_7251434_7251459	1.04904	NHLH1,2.p2	AK035804|Clcn4-2|12727|chloride channel 4-2
mm9_v1_chr6_-_42274556_42274690	1.04801	NHLH1,2.p2	AK163654|Fam131b|76156|family with sequence similarity 131, member B	AK047763|Fam131b|76156|family with sequence similarity 131, member B	AK018206|Fam131b|76156|family with sequence similarity 131, member B	AK018325|Fam131b|76156|family with sequence similarity 131, member B	AK158869|Fam131b|76156|family with sequence similarity 131, member B	NM_001113327|Fam131b|76156|family with sequence similarity 131, member B	NM_029528|Fam131b|76156|family with sequence similarity 131, member B
mm9_v1_chr17_+_6079804_6079929	1.04618	NHLH1,2.p2	NM_181392|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK084443|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK003547|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK003579|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK011281|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	BC029238|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK013225|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK019011|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK012257|Gtf2h5|66467|general transcription factor IIH, polypeptide 5
mm9_v1_chr19_-_7557690_7557778	1.04565	NHLH1,2.p2	BC079882|Rtn3|20168|reticulon 3	BC014697|Rtn3|20168|reticulon 3	AK075883|Rtn3|20168|reticulon 3	AK165683|Rtn3|20168|reticulon 3	AK088670|Rtn3|20168|reticulon 3	AK049845|Rtn3|20168|reticulon 3	AF195940|Rtn3|20168|reticulon 3	AK148792|Rtn3|20168|reticulon 3	AK148947|Rtn3|20168|reticulon 3	AK036892|Rtn3|20168|reticulon 3	AK032109|Rtn3|20168|reticulon 3	AY427822|Rtn3|20168|reticulon 3	AY750849|Rtn3|20168|reticulon 3	AB046114|Rtn3|20168|reticulon 3	AY164700|Rtn3|20168|reticulon 3	NM_053076|Rtn3|20168|reticulon 3	NM_001003933|Rtn3|20168|reticulon 3	NM_001003934|Rtn3|20168|reticulon 3
mm9_v1_chrX_+_10294490_10294637	1.04509	NHLH1,2.p2	NM_001166635|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	NM_026524|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK160062|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK090003|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK159166|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK172143|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	BC004014|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	BC052899|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK151153|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm9_v1_chr16_-_48994193_48994207	1.04472	NHLH1,2.p2	AK039172|Dzip3|224170|DAZ interacting protein 3, zinc finger
mm9_v1_chr7_-_17200285_17200343	1.04398	NHLH1,2.p2	BC139459|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	BC139461|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	AK147326|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	AK147688|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	NM_172739|Grlf1|232906|glucocorticoid receptor DNA binding factor 1
mm9_v1_chr6_+_29346606_29346665	1.04298	NHLH1,2.p2	NM_145574|Ccdc136|232664|coiled-coil domain containing 136
mm9_v1_chr4_+_130348406_130348575	1.041	NHLH1,2.p2	AK129153|Sdc3|20970|syndecan 3	NM_011520|Sdc3|20970|syndecan 3	AK155127|Sdc3|20970|syndecan 3	BC054795|Sdc3|20970|syndecan 3	BC062093|Sdc3|20970|syndecan 3	U52826|Sdc3|20970|syndecan 3
mm9_v1_chr1_+_173275837_173275844	1.04066	NHLH1,2.p2	Y17393|Pfdn2|18637|prefoldin 2	BC026839|Pfdn2|18637|prefoldin 2
mm9_v1_chr2_+_30027012_30027044	1.03808	NHLH1,2.p2	AK144459|Endog|13804|endonuclease G	AB012108|Endog|13804|endonuclease G	NM_007931|Endog|13804|endonuclease G	BC030177|Endog|13804|endonuclease G
mm9_v1_chr1_-_99873795_99873812	1.03785	NHLH1,2.p2	BC129869|Pam|18484|peptidylglycine alpha-amidating monooxygenase
mm9_v1_chr10_+_81037993_81038004	1.03482	NHLH1,2.p2	AK160999|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)
mm9_v1_chr11_+_6255900_6256017	1.03255	NHLH1,2.p2	AK204256|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	AK075848|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)
mm9_v1_chr5_-_109058768_109058782	1.03037	NHLH1,2.p2	AK133581|Gak|231580|cyclin G associated kinase	AK150112|Gak|231580|cyclin G associated kinase	AK166682|Gak|231580|cyclin G associated kinase
mm9_v1_chr3_+_133903056_133903111	1.02902	NHLH1,2.p2	NM_001004367|Cxxc4|319478|CXXC finger 4
mm9_v1_chr5_+_106161255_106161339	1.02874	NHLH1,2.p2	AK167985|Lrrc8d|231549|leucine rich repeat containing 8D	AK181633|Lrrc8d|231549|leucine rich repeat containing 8D
mm9_v1_chr9_-_79641131_79641161	1.02586	NHLH1,2.p2	AK150071|Tmem30a|69981|transmembrane protein 30A	AK170171|Tmem30a|69981|transmembrane protein 30A	AK170697|Tmem30a|69981|transmembrane protein 30A	AK159364|Tmem30a|69981|transmembrane protein 30A
mm9_v1_chr1_-_162142846_162143024	1.02546	NHLH1,2.p2	U97327|Cacybp|12301|calcyclin binding protein	AK089043|Cacybp|12301|calcyclin binding protein	AK177869|Cacybp|12301|calcyclin binding protein	BC025948|Cacybp|12301|calcyclin binding protein	NM_009786|Cacybp|12301|calcyclin binding protein	AK013924|Cacybp|12301|calcyclin binding protein	AK145013|Cacybp|12301|calcyclin binding protein
mm9_v1_chr14_+_35124004_35124021	1.02365	NHLH1,2.p2	AK075971|Glud1|14661|glutamate dehydrogenase 1	X57024|Glud1|14661|glutamate dehydrogenase 1	AK089152|Glud1|14661|glutamate dehydrogenase 1
mm9_v1_chr3_+_33699121_33699184	1.02362	NHLH1,2.p2	AK044266|Ttc14|67120|tetratricopeptide repeat domain 14	AK041095|Ttc14|67120|tetratricopeptide repeat domain 14	AK173315|Ttc14|67120|tetratricopeptide repeat domain 14	AK035570|Ttc14|67120|tetratricopeptide repeat domain 14	BC024847|Ttc14|67120|tetratricopeptide repeat domain 14	BC138212|Ttc14|67120|tetratricopeptide repeat domain 14	BC145944|Ttc14|67120|tetratricopeptide repeat domain 14	AK012246|Ttc14|67120|tetratricopeptide repeat domain 14	AK015308|Ttc14|67120|tetratricopeptide repeat domain 14	AK016619|Ttc14|67120|tetratricopeptide repeat domain 14
mm9_v1_chr15_+_98956940_98957052	1.02285	NHLH1,2.p2	BC072579|Spats2|72572|spermatogenesis associated, serine-rich 2
mm9_v1_chr8_-_48618741_48618847	1.02238	NHLH1,2.p2	BC147504|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	BC151159|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	AK083445|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	AK085769|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	AK160812|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	NM_177240|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene
mm9_v1_chr5_-_109058762_109058763	1.01903	NHLH1,2.p2	BC065109|Gak|231580|cyclin G associated kinase
mm9_v1_chr7_-_28317608_28317617	1.01645	NHLH1,2.p2	AK182880|Pld3|18807|phospholipase D family, member 3
mm9_v1_chr2_-_30329717_30329736	1.01633	NHLH1,2.p2	BC003464|Ier5l|72500|immediate early response 5-like	BC010234|Ier5l|72500|immediate early response 5-like	BC040084|Ier5l|72500|immediate early response 5-like	NM_030244|Ier5l|72500|immediate early response 5-like	AK012145|Ier5l|72500|immediate early response 5-like
mm9_v1_chr16_-_8672226_8672229	1.01521	NHLH1,2.p2	AK150245|Carhsp1|52502|calcium regulated heat stable protein 1	BC086754|Carhsp1|52502|calcium regulated heat stable protein 1
mm9_v1_chr3_+_96049419_96049503	1.01442	NHLH1,2.p2	BC089519|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC147778|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC147781|Hist2h2aa1|15267|histone cluster 2, H2aa1	AK002725|Hist2h2aa1|15267|histone cluster 2, H2aa1	AK006728|Hist2h2aa1|15267|histone cluster 2, H2aa1	NM_013549|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC010564|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC053966|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC062255|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC080809|Hist2h3c1|15077|histone cluster 2, H3c1	Z30940|Hist2h2aa1|15267|histone cluster 2, H2aa1	NM_178212|Hist2h2aa2|319192|histone cluster 2, H2aa2
mm9_v1_chr16_-_44332950_44332950	1.01324	NHLH1,2.p2	BC079584|Sidt1|320007|SID1 transmembrane family, member 1	NM_001159419|Sidt1|320007|SID1 transmembrane family, member 1	NM_198034|Sidt1|320007|SID1 transmembrane family, member 1
mm9_v1_chr2_-_35056195_35056311	1.01105	NHLH1,2.p2	BC009085|Rab14|68365|RAB14, member RAS oncogene family
mm9_v1_chr16_+_96502595_96502638	1.01049	NHLH1,2.p2	BC057887|B3galt5|93961|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	NM_033149|B3galt5|93961|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
mm9_v1_chr9_+_107904919_107905018	1.00921	NHLH1,2.p2	AK172921|Ip6k1|27399|inositol hexaphosphate kinase 1	AK037925|Ip6k1|27399|inositol hexaphosphate kinase 1	AK088872|Ip6k1|27399|inositol hexaphosphate kinase 1	BC053030|Ip6k1|27399|inositol hexaphosphate kinase 1	AK171310|Ip6k1|27399|inositol hexaphosphate kinase 1	AK166143|Ip6k1|27399|inositol hexaphosphate kinase 1	BC059006|Ip6k1|27399|inositol hexaphosphate kinase 1	NM_013785|Ip6k1|27399|inositol hexaphosphate kinase 1
mm9_v1_chr18_+_61265225_61265605	1.00912	NHLH1,2.p2	AK146069|Csf1r|12978|colony stimulating factor 1 receptor	NM_001037859|Csf1r|12978|colony stimulating factor 1 receptor	BC066863|Csf1r|12978|colony stimulating factor 1 receptor	BC050024|Csf1r|12978|colony stimulating factor 1 receptor	AK171241|Csf1r|12978|colony stimulating factor 1 receptor	AK156550|Csf1r|12978|colony stimulating factor 1 receptor	AK155565|Csf1r|12978|colony stimulating factor 1 receptor	AK155488|Csf1r|12978|colony stimulating factor 1 receptor	AK079247|Csf1r|12978|colony stimulating factor 1 receptor	AK155576|Csf1r|12978|colony stimulating factor 1 receptor	AK155858|Csf1r|12978|colony stimulating factor 1 receptor	AK154128|Csf1r|12978|colony stimulating factor 1 receptor	AK155640|Csf1r|12978|colony stimulating factor 1 receptor	AK155654|Csf1r|12978|colony stimulating factor 1 receptor	AK171386|Csf1r|12978|colony stimulating factor 1 receptor	AK004947|Csf1r|12978|colony stimulating factor 1 receptor	AK154556|Csf1r|12978|colony stimulating factor 1 receptor	AK154653|Csf1r|12978|colony stimulating factor 1 receptor	AK154699|Csf1r|12978|colony stimulating factor 1 receptor	AK076215|Csf1r|12978|colony stimulating factor 1 receptor	AK143545|Csf1r|12978|colony stimulating factor 1 receptor	X06368|Csf1r|12978|colony stimulating factor 1 receptor	X68932|Csf1r|12978|colony stimulating factor 1 receptor	AK080326|Csf1r|12978|colony stimulating factor 1 receptor	BC043054|Csf1r|12978|colony stimulating factor 1 receptor	AK089498|Csf1r|12978|colony stimulating factor 1 receptor	AK171543|Csf1r|12978|colony stimulating factor 1 receptor	BC036343|Csf1r|12978|colony stimulating factor 1 receptor	AK041299|Csf1r|12978|colony stimulating factor 1 receptor
mm9_v1_chr8_-_109580588_109580636	1.00886	NHLH1,2.p2	AK145515|Cog8|97484|component of oligomeric golgi complex 8	NM_139229|Cog8|97484|component of oligomeric golgi complex 8
mm9_v1_chr14_+_77556569_77556616	1.00846	NHLH1,2.p2	AK082388|Enox1|239188|ecto-NOX disulfide-thiol exchanger 1	AK078337|Enox1|239188|ecto-NOX disulfide-thiol exchanger 1	AK162001|Enox1|239188|ecto-NOX disulfide-thiol exchanger 1
mm9_v1_chr14_+_121434765_121434823	1.00815	NHLH1,2.p2	AK134958|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	NM_134082|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm9_v1_chr3_-_141645214_141645214	1.00678	NHLH1,2.p2	BC065143|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B	NM_007560|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B
mm9_v1_chrX_+_91612471_91612621	1.006	NHLH1,2.p2	AK002320|Apoo|68316|apolipoprotein O	AK003831|Apoo|68316|apolipoprotein O	BC016557|Apoo|68316|apolipoprotein O	BC107208|Apoo|68316|apolipoprotein O	BC107209|Apoo|68316|apolipoprotein O
mm9_v1_chr12_-_87165448_87165516	1.00403	NHLH1,2.p2	AK152230|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene	BC004591|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene	AF270646|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene	NM_021446|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene	AK004480|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene
mm9_v1_chr2_-_180008165_180008177	1.00373	NHLH1,2.p2	AK050121|Cables2|252966|CDK5 and Abl enzyme substrate 2	NM_145851|Cables2|252966|CDK5 and Abl enzyme substrate 2
mm9_v1_chr3_-_89049088_89049120	1.00121	NHLH1,2.p2	AK132368|Trim46|360213|tripartite motif-containing 46	AK170904|Trim46|360213|tripartite motif-containing 46	NM_001039466|Trim46|360213|tripartite motif-containing 46
mm9_v1_chr6_-_25639835_25639849	1.00083	NHLH1,2.p2	BC031918|Gpr37|14763|G protein-coupled receptor 37
mm9_v1_chr1_+_36748379_36748424	1.00002	NHLH1,2.p2	BC005564|Cox5b|12859|cytochrome c oxidase, subunit Vb	BC099474|Cox5b|12859|cytochrome c oxidase, subunit Vb	AK135174|Cox5b|12859|cytochrome c oxidase, subunit Vb	AK008339|Cox5b|12859|cytochrome c oxidase, subunit Vb	AK131673|Cox5b|12859|cytochrome c oxidase, subunit Vb	X53157|Cox5b|12859|cytochrome c oxidase, subunit Vb	BC096048|Cox5b|12859|cytochrome c oxidase, subunit Vb
mm9_v1_chr9_-_26962964_26963002	0.999983	NHLH1,2.p2	AJ300304|Jam3|83964|junction adhesion molecule 3	AK003326|Jam3|83964|junction adhesion molecule 3	AK013156|Jam3|83964|junction adhesion molecule 3	AK032833|Jam3|83964|junction adhesion molecule 3	NM_023277|Jam3|83964|junction adhesion molecule 3	BC024357|Jam3|83964|junction adhesion molecule 3	AK008187|Jam3|83964|junction adhesion molecule 3	AK160648|Jam3|83964|junction adhesion molecule 3
mm9_v1_chr3_-_95861752_95861793	0.998943	NHLH1,2.p2	AK083678|Vps45|22365|vacuolar protein sorting 45 (yeast)	BC058528|Vps45|22365|vacuolar protein sorting 45 (yeast)	AK146190|Vps45|22365|vacuolar protein sorting 45 (yeast)	AK168101|Vps45|22365|vacuolar protein sorting 45 (yeast)
mm9_v1_chr15_+_54943878_54943952	0.994379	NHLH1,2.p2	BC004774|Deptor|97998|DEP domain containing MTOR-interacting protein
mm9_v1_chr18_-_73914084_73914137	0.99407	NHLH1,2.p2	BC019371|Elac1|114615|elaC homolog 1 (E. coli)	AF308697|Elac1|114615|elaC homolog 1 (E. coli)	NM_053255|Elac1|114615|elaC homolog 1 (E. coli)
mm9_v1_chr13_+_85329004_85329091	0.99389	NHLH1,2.p2	AF287135|Ccnh|66671|cyclin H	AK137849|Ccnh|66671|cyclin H	AK078059|Ccnh|66671|cyclin H	NM_023243|Ccnh|66671|cyclin H
mm9_v1_chr10_+_13686174_13686209	0.992124	NHLH1,2.p2	AK147244|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147348|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147655|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	NM_010437|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2
mm9_v1_chr2_-_26244834_26244836	0.989407	NHLH1,2.p2	NM_001085407|Sdccag3|68112|serologically defined colon cancer antigen 3	NM_001085408|Sdccag3|68112|serologically defined colon cancer antigen 3	NM_026563|Sdccag3|68112|serologically defined colon cancer antigen 3
mm9_v1_chr16_-_18089085_18089282	0.987099	NHLH1,2.p2	BC125327|Prodh|19125|proline dehydrogenase	BC008548|Prodh|19125|proline dehydrogenase	U80020|Prodh|19125|proline dehydrogenase	AF120279|Prodh|19125|proline dehydrogenase	AK144068|Prodh|19125|proline dehydrogenase	AK085938|Prodh|19125|proline dehydrogenase	NM_011172|Prodh|19125|proline dehydrogenase
mm9_v1_chr10_-_105011265_105011266	0.986695	NHLH1,2.p2	BC138362|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	BC138363|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2
mm9_v1_chrX_-_147531030_147531085	0.986658	NHLH1,2.p2	BC037444|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC025008|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	AK044504|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC049668|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_001164578|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_175146|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)
mm9_v1_chr9_-_122775060_122775123	0.986567	NHLH1,2.p2	BC099930|Zfp445|235682|zinc finger protein 445	NM_173364|Zfp445|235682|zinc finger protein 445
mm9_v1_chr7_-_7251462_7251471	0.986448	NHLH1,2.p2	DQ186662|Clcn4-2|12727|chloride channel 4-2	AK088317|Clcn4-2|12727|chloride channel 4-2
mm9_v1_chr8_-_27087111_27087235	0.986229	NHLH1,2.p2	BC024084|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK160068|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK159649|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK035264|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK152926|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK149883|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	NM_029884|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase
mm9_v1_chr16_-_22439642_22439745	0.984929	NHLH1,2.p2	BC034680|Etv5|104156|ets variant gene 5	NM_023794|Etv5|104156|ets variant gene 5	AK031452|Etv5|104156|ets variant gene 5	AK168881|Etv5|104156|ets variant gene 5	AK049234|Etv5|104156|ets variant gene 5	AK164091|Etv5|104156|ets variant gene 5	AK018368|Etv5|104156|ets variant gene 5
mm9_v1_chrX_+_132804865_132804886	0.984356	NHLH1,2.p2	AF187066|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1	AK010500|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1	AF097440|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1	BC027815|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr8_-_110112260_110112344	0.983915	NHLH1,2.p2	AK146128|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	M64641|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	AK031013|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	AK159825|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	AK012463|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
mm9_v1_chr9_-_44543245_44543320	0.982503	NHLH1,2.p2	BC058712|Phldb1|102693|pleckstrin homology-like domain, family B, member 1	NM_153537|Phldb1|102693|pleckstrin homology-like domain, family B, member 1
mm9_v1_chr3_-_40886957_40886982	0.981727	NHLH1,2.p2	NM_027558|Pgrmc2|70804|progesterone receptor membrane component 2
mm9_v1_chr19_-_10175969_10175986	0.97673	NHLH1,2.p2	BC057189|Fads2|56473|fatty acid desaturase 2
mm9_v1_chr11_-_110198921_110198958	0.975884	NHLH1,2.p2	AK046203|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5	AK169879|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5	AK138604|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5	AK162579|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5
mm9_v1_chr1_+_5073161_5073324	0.97526	NHLH1,2.p2	AK151659|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK034165|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK135137|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK152147|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK081492|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	BC009154|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK078767|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	NM_133826|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H
mm9_v1_chr11_-_116515361_116515394	0.971801	NHLH1,2.p2	AK172475|Cygb|114886|cytoglobin	AK163073|Cygb|114886|cytoglobin
mm9_v1_chr1_+_7079000_7079035	0.971664	NHLH1,2.p2	NM_183028|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm9_v1_chr7_-_116637251_116637251	0.969003	NHLH1,2.p2	AK147559|Trim66|330627|tripartite motif-containing 66	NM_001170913|Trim66|330627|tripartite motif-containing 66
mm9_v1_chr2_+_156138184_156138368	0.96871	NHLH1,2.p2	AK014912|4921517L17Rik|70873|RIKEN cDNA 4921517L17 gene	NM_027585|4921517L17Rik|70873|RIKEN cDNA 4921517L17 gene	BC140978|4921517L17Rik|70873|RIKEN cDNA 4921517L17 gene	AK162372|4921517L17Rik|70873|RIKEN cDNA 4921517L17 gene	AK017330|4921517L17Rik|70873|RIKEN cDNA 4921517L17 gene	AK158271|4921517L17Rik|70873|RIKEN cDNA 4921517L17 gene	BC027204|4921517L17Rik|70873|RIKEN cDNA 4921517L17 gene
mm9_v1_chr5_-_116858596_116858671	0.968361	NHLH1,2.p2	
mm9_v1_chr1_-_133964485_133964532	0.9666	NHLH1,2.p2	AK079372|Mfsd4|213006|major facilitator superfamily domain containing 4	BC058790|Mfsd4|213006|major facilitator superfamily domain containing 4	AK044667|Mfsd4|213006|major facilitator superfamily domain containing 4	AK085484|Mfsd4|213006|major facilitator superfamily domain containing 4	BC080198|Mfsd4|213006|major facilitator superfamily domain containing 4	AK038882|Mfsd4|213006|major facilitator superfamily domain containing 4
mm9_v1_chr10_-_80507150_80507447	0.965775	NHLH1,2.p2	AK208305|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK215998|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK191756|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK212065|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK196000|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm9_v1_chr12_-_113205172_113205207	0.962244	NHLH1,2.p2	BC059719|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene	AK008333|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene	NM_027360|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene
mm9_v1_chr14_-_62911797_62911815	0.962214	NHLH1,2.p2	BC038059|Dleu7|239133|deleted in lymphocytic leukemia, 7	NM_173419|Dleu7|239133|deleted in lymphocytic leukemia, 7
mm9_v1_chr12_+_70397723_70397748	0.961231	NHLH1,2.p2	AK051418|Klhdc2|69554|kelch domain containing 2	BC005581|Klhdc2|69554|kelch domain containing 2
mm9_v1_chr4_-_70195952_70195978	0.961001	NHLH1,2.p2	AK122378|Megf9|230316|multiple EGF-like-domains 9	AK035987|Megf9|230316|multiple EGF-like-domains 9	AK039319|Megf9|230316|multiple EGF-like-domains 9	AK162891|Megf9|230316|multiple EGF-like-domains 9	NM_172694|Megf9|230316|multiple EGF-like-domains 9	AK170687|Megf9|230316|multiple EGF-like-domains 9
mm9_v1_chr16_+_18877129_18877328	0.960231	NHLH1,2.p2	BC052856|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	BC060181|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm9_v1_chr1_+_94728419_94728433	0.960121	NHLH1,2.p2	BC062902|Gpc1|14733|glypican 1
mm9_v1_chr2_-_155969865_155969946	0.959435	NHLH1,2.p2	AK084831|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	BC012651|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	BC010586|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	AK005724|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	AK159828|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	AK003786|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	AK075575|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	AJ222660|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	AK132838|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	AK148527|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	NM_010911|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)
mm9_v1_chrX_-_45562050_45562056	0.959243	NHLH1,2.p2	BC090832|Zdhhc9|208884|zinc finger, DHHC domain containing 9
mm9_v1_chr4_+_138748812_138748922	0.958082	NHLH1,2.p2	AK159390|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK160082|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK156778|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	NM_009798|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	BC002053|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK153367|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK153394|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK168738|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	NM_001037761|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	U10406|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	U10407|Capzb|12345|capping protein (actin filament) muscle Z-line, beta
mm9_v1_chr4_+_117507914_117507983	0.956693	NHLH1,2.p2	AK014572|Slc6a9|14664|solute carrier family 6 (neurotransmitter transporter, glycine), member 9	X67056|Slc6a9|14664|solute carrier family 6 (neurotransmitter transporter, glycine), member 9
mm9_v1_chr6_+_122258946_122259119	0.955001	NHLH1,2.p2	AK153302|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK151607|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK149177|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK153474|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK004656|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK145913|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK153140|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK133943|M6pr|17113|mannose-6-phosphate receptor, cation dependent	X64068|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC046956|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC080811|M6pr|17113|mannose-6-phosphate receptor, cation dependent	NM_010749|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC027210|M6pr|17113|mannose-6-phosphate receptor, cation dependent	X56831|M6pr|17113|mannose-6-phosphate receptor, cation dependent	M63286|M6pr|17113|mannose-6-phosphate receptor, cation dependent
mm9_v1_chr18_-_31769504_31769590	0.953151	NHLH1,2.p2	BC020087|Slc25a46|67453|solute carrier family 25, member 46	AK030346|Slc25a46|67453|solute carrier family 25, member 46	AK031117|Slc25a46|67453|solute carrier family 25, member 46	AK160834|Slc25a46|67453|solute carrier family 25, member 46	NM_026165|Slc25a46|67453|solute carrier family 25, member 46	AK004625|Slc25a46|67453|solute carrier family 25, member 46	AK008131|Slc25a46|67453|solute carrier family 25, member 46	AK078383|Slc25a46|67453|solute carrier family 25, member 46	AK147936|Slc25a46|67453|solute carrier family 25, member 46
mm9_v1_chr15_-_91403685_91403705	0.951136	NHLH1,2.p2	AK147341|Slc2a13|239606|solute carrier family 2 (facilitated glucose transporter), member 13	NM_001033633|Slc2a13|239606|solute carrier family 2 (facilitated glucose transporter), member 13
mm9_v1_chr1_-_54251877_54252011	0.950548	NHLH1,2.p2	AK042922|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_001001883|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_172655|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	AK047602|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm9_v1_chr3_+_88357674_88357730	0.950504	NHLH1,2.p2	AK156515|Ubqln4|94232|ubiquilin 4	AK160578|Ubqln4|94232|ubiquilin 4	BC017686|Ubqln4|94232|ubiquilin 4	AK150211|Ubqln4|94232|ubiquilin 4
mm9_v1_chr5_+_122161617_122161617	0.950395	NHLH1,2.p2	AF041472|Atxn2|20239|ataxin 2	NM_009125|Atxn2|20239|ataxin 2
mm9_v1_chr7_-_35005681_35005711	0.948156	NHLH1,2.p2	AK152508|Gpi1|14751|glucose phosphate isomerase 1
mm9_v1_chr4_-_126427788_126428041	0.946449	NHLH1,2.p2	AK216583|Ncdn|26562|neurochondrin	AK122327|Ncdn|26562|neurochondrin
mm9_v1_chr16_+_33829715_33830005	0.944858	NHLH1,2.p2	AF022110|Itgb5|16419|integrin beta 5	NM_001145884|Itgb5|16419|integrin beta 5	NM_010580|Itgb5|16419|integrin beta 5	BC058246|Itgb5|16419|integrin beta 5	AK143532|Itgb5|16419|integrin beta 5	AK140251|Itgb5|16419|integrin beta 5	BC046280|Itgb5|16419|integrin beta 5	AF043256|Itgb5|16419|integrin beta 5	AF043257|Itgb5|16419|integrin beta 5	AK087476|Itgb5|16419|integrin beta 5
mm9_v1_chr13_-_23654226_23654256	0.944535	NHLH1,2.p2	BC127042|Hist1h3e|319151|histone cluster 1, H3e	NM_178205|Hist1h3e|319151|histone cluster 1, H3e
mm9_v1_chrX_-_98615554_98615567	0.944312	NHLH1,2.p2	AK082075|Zmym3|56364|zinc finger, MYM-type 3	NM_001177988|Zmym3|56364|zinc finger, MYM-type 3	NM_019831|Zmym3|56364|zinc finger, MYM-type 3
mm9_v1_chr3_-_95861723_95861742	0.944033	NHLH1,2.p2	BC012691|Vps45|22365|vacuolar protein sorting 45 (yeast)
mm9_v1_chr12_+_81564081_81564252	0.943753	NHLH1,2.p2	AK167692|Exd2|97827|exonuclease 3'-5' domain containing 2	NM_133798|Exd2|97827|exonuclease 3'-5' domain containing 2	AK166390|Exd2|97827|exonuclease 3'-5' domain containing 2	AK146901|Exd2|97827|exonuclease 3'-5' domain containing 2	AK158201|Exd2|97827|exonuclease 3'-5' domain containing 2	AK164329|Exd2|97827|exonuclease 3'-5' domain containing 2	AK147922|Exd2|97827|exonuclease 3'-5' domain containing 2
mm9_v1_chr10_-_127103595_127103798	0.943188	NHLH1,2.p2	AK171180|Nab2|17937|Ngfi-A binding protein 2	BC045139|Nab2|17937|Ngfi-A binding protein 2	AK155501|Nab2|17937|Ngfi-A binding protein 2	AK158688|Nab2|17937|Ngfi-A binding protein 2	U47543|Nab2|17937|Ngfi-A binding protein 2	NM_001122895|Nab2|17937|Ngfi-A binding protein 2	NM_008668|Nab2|17937|Ngfi-A binding protein 2
mm9_v1_chr6_+_73198498_73198722	0.943023	NHLH1,2.p2	NM_019879|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK088888|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK005080|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK087390|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK002754|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AF144101|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK139288|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	BC011087|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK184184|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit
mm9_v1_chr15_+_54943978_54944054	0.942687	NHLH1,2.p2	AK145208|Deptor|97998|DEP domain containing MTOR-interacting protein	AK220300|Deptor|97998|DEP domain containing MTOR-interacting protein	NM_145470|Deptor|97998|DEP domain containing MTOR-interacting protein
mm9_v1_chr16_+_22009551_22009592	0.942646	NHLH1,2.p2	NM_029457|Senp2|75826|SUMO/sentrin specific peptidase 2	AK031030|Senp2|75826|SUMO/sentrin specific peptidase 2	AK015987|Senp2|75826|SUMO/sentrin specific peptidase 2	BC031652|Senp2|75826|SUMO/sentrin specific peptidase 2	AF368904|Senp2|75826|SUMO/sentrin specific peptidase 2
mm9_v1_chr1_+_169528492_169528646	0.942565	NHLH1,2.p2	NM_009107|Rxrg|20183|retinoid X receptor gamma	BC058401|Rxrg|20183|retinoid X receptor gamma	S62948|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr15_-_64214297_64214312	0.940747	NHLH1,2.p2	AF075461|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1	AF075462|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1
mm9_v1_chr11_-_35793590_35793590	0.940278	NHLH1,2.p2	AB271907|Wwc1|211652|WW, C2 and coiled-coil domain containing 1	DQ256090|Wwc1|211652|WW, C2 and coiled-coil domain containing 1	NM_170779|Wwc1|211652|WW, C2 and coiled-coil domain containing 1
mm9_v1_chrX_-_96086314_96086363	0.939889	NHLH1,2.p2	AK031419|Ophn1|94190|oligophrenin 1	AK036038|Ophn1|94190|oligophrenin 1	AK043239|Ophn1|94190|oligophrenin 1	AK048153|Ophn1|94190|oligophrenin 1	AK166392|Ophn1|94190|oligophrenin 1	NM_052976|Ophn1|94190|oligophrenin 1	AK039304|Ophn1|94190|oligophrenin 1
mm9_v1_chr7_-_135020290_135020344	0.938873	NHLH1,2.p2	BC028251|Zfp668|244219|zinc finger protein 668	AK047593|Zfp668|244219|zinc finger protein 668	AK081436|Zfp668|244219|zinc finger protein 668	AK053438|Zfp668|244219|zinc finger protein 668	NM_146259|Zfp668|244219|zinc finger protein 668	AK169556|Zfp668|244219|zinc finger protein 668
mm9_v1_chr7_+_120909509_120909519	0.93743	NHLH1,2.p2	NM_145584|Spon1|233744|spondin 1, (f-spondin) extracellular matrix protein
mm9_v1_chr13_+_104968863_104968906	0.936614	NHLH1,2.p2	AK039280|Trim23|81003|tripartite motif-containing 23
mm9_v1_chr7_-_149558139_149558173	0.932855	NHLH1,2.p2	BC049666|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	AK045822|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	AK163573|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	NM_177265|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	AK031961|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene
mm9_v1_chr14_+_34736806_34736957	0.932633	NHLH1,2.p2	L42114|Gdf10|14560|growth differentiation factor 10	S82648|Gdf10|14560|growth differentiation factor 10
mm9_v1_chr1_+_75139300_75139429	0.932314	NHLH1,2.p2	AK034667|Fam134a|227298|family with sequence similarity 134, member A	NM_170755|Fam134a|227298|family with sequence similarity 134, member A	AK172093|Fam134a|227298|family with sequence similarity 134, member A	BC070406|Fam134a|227298|family with sequence similarity 134, member A	AK165957|Fam134a|227298|family with sequence similarity 134, member A	AK160400|Fam134a|227298|family with sequence similarity 134, member A
mm9_v1_chr6_-_34126949_34127110	0.931233	NHLH1,2.p2	AK042150|Slc35b4|58246|solute carrier family 35, member B4	AK029046|Slc35b4|58246|solute carrier family 35, member B4	BC033512|Slc35b4|58246|solute carrier family 35, member B4	AK033913|Slc35b4|58246|solute carrier family 35, member B4	BC016275|Slc35b4|58246|solute carrier family 35, member B4	AK045791|Slc35b4|58246|solute carrier family 35, member B4	AK138591|Slc35b4|58246|solute carrier family 35, member B4	AB041549|Slc35b4|58246|solute carrier family 35, member B4	NM_021435|Slc35b4|58246|solute carrier family 35, member B4	AK029969|Slc35b4|58246|solute carrier family 35, member B4
mm9_v1_chr16_+_18071099_18071220	0.931172	NHLH1,2.p2	AK187760|Dgcr6|13353|DiGeorge syndrome critical region gene 6	AK219346|Dgcr6|13353|DiGeorge syndrome critical region gene 6	AK219449|Dgcr6|13353|DiGeorge syndrome critical region gene 6
mm9_v1_chr6_-_13788453_13788525	0.930155	NHLH1,2.p2	AK043090|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr4_+_137476662_137476741	0.928948	NHLH1,2.p2	AK163790|Ece1|230857|endothelin converting enzyme 1
mm9_v1_chr15_-_84818368_84818512	0.927185	NHLH1,2.p2	AK149782|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene	NM_001033273|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene	AK170532|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene
mm9_v1_chr3_+_97462134_97462247	0.925237	NHLH1,2.p2	BC060228|Prkab2|108097|protein kinase, AMP-activated, beta 2 non-catalytic subunit	NM_182997|Prkab2|108097|protein kinase, AMP-activated, beta 2 non-catalytic subunit
mm9_v1_chr1_+_163072784_163072870	0.924563	NHLH1,2.p2	AK016757|Ankrd45|73844|ankyrin repeat domain 45	NM_028664|Ankrd45|73844|ankyrin repeat domain 45	BC049713|Ankrd45|73844|ankyrin repeat domain 45
mm9_v1_chr17_-_35292893_35292992	0.924385	NHLH1,2.p2	BC006664|Prrc2a|53761|proline-rich coiled-coil 2A
mm9_v1_chr13_-_55589377_55589460	0.922665	NHLH1,2.p2	AK132060|Dbn1|56320|drebrin 1	AK162697|Dbn1|56320|drebrin 1	AB064321|Dbn1|56320|drebrin 1	AF187147|Dbn1|56320|drebrin 1	AF187148|Dbn1|56320|drebrin 1	NM_001177371|Dbn1|56320|drebrin 1	NM_001177372|Dbn1|56320|drebrin 1	NM_019813|Dbn1|56320|drebrin 1
mm9_v1_chr10_+_76993060_76993181	0.919838	NHLH1,2.p2	AK136502|Itgb2|16414|integrin beta 2	NM_008404|Itgb2|16414|integrin beta 2	AK088435|Itgb2|16414|integrin beta 2	AK169587|Itgb2|16414|integrin beta 2	AK161236|Itgb2|16414|integrin beta 2	X14951|Itgb2|16414|integrin beta 2
mm9_v1_chr10_-_80488111_80488155	0.919562	NHLH1,2.p2	AK081336|Diras1|208666|DIRAS family, GTP-binding RAS-like 1	BC057556|Diras1|208666|DIRAS family, GTP-binding RAS-like 1	NM_145217|Diras1|208666|DIRAS family, GTP-binding RAS-like 1
mm9_v1_chr5_-_137463661_137463751	0.919093	NHLH1,2.p2	AK080799|Znhit1|70103|zinc finger, HIT domain containing 1	NM_027318|Znhit1|70103|zinc finger, HIT domain containing 1
mm9_v1_chr1_-_72583137_72583137	0.918468	NHLH1,2.p2	BC098191|March4|381270|membrane-associated ring finger (C3HC4) 4	NM_001045533|March4|381270|membrane-associated ring finger (C3HC4) 4
mm9_v1_chr4_+_150229178_150229242	0.917896	NHLH1,2.p2	AK004851|Errfi1|74155|ERBB receptor feedback inhibitor 1	AK166791|Errfi1|74155|ERBB receptor feedback inhibitor 1	AK167359|Errfi1|74155|ERBB receptor feedback inhibitor 1	AK168797|Errfi1|74155|ERBB receptor feedback inhibitor 1	AK139780|Errfi1|74155|ERBB receptor feedback inhibitor 1	BC005546|Errfi1|74155|ERBB receptor feedback inhibitor 1	NM_133753|Errfi1|74155|ERBB receptor feedback inhibitor 1	AK167156|Errfi1|74155|ERBB receptor feedback inhibitor 1
mm9_v1_chr10_+_81038028_81038276	0.917876	NHLH1,2.p2	AK144581|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)	BC071219|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)	BC051955|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)	BC062961|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)	AF145958|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)	NM_019725|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)
mm9_v1_chr18_+_67624482_67624504	0.917177	NHLH1,2.p2	NM_144867|Slmo1|225655|slowmo homolog 1 (Drosophila)
mm9_v1_chr16_+_31664188_31664368	0.916472	NHLH1,2.p2	AK143780|Dlg1|13383|discs, large homolog 1 (Drosophila)	AY159380|Dlg1|13383|discs, large homolog 1 (Drosophila)
mm9_v1_chr8_+_73051625_73051647	0.913745	NHLH1,2.p2	AK170993|Fkbp8|14232|FK506 binding protein 8	NM_001111066|Fkbp8|14232|FK506 binding protein 8	NM_010223|Fkbp8|14232|FK506 binding protein 8	AK152198|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr10_-_87966607_87966746	0.911971	NHLH1,2.p2	AK032497|Chpt1|212862|choline phosphotransferase 1	AY445814|Chpt1|212862|choline phosphotransferase 1	AK007964|Chpt1|212862|choline phosphotransferase 1	BC016251|Chpt1|212862|choline phosphotransferase 1	BC031435|Chpt1|212862|choline phosphotransferase 1	NM_001146690|Chpt1|212862|choline phosphotransferase 1	NM_144807|Chpt1|212862|choline phosphotransferase 1
mm9_v1_chr5_-_147606370_147606581	0.911939	NHLH1,2.p2	AK035629|Usp12|22217|ubiquitin specific peptidase 12	AK167153|Usp12|22217|ubiquitin specific peptidase 12	BC068136|Usp12|22217|ubiquitin specific peptidase 12	NM_011669|Usp12|22217|ubiquitin specific peptidase 12	AK006739|Usp12|22217|ubiquitin specific peptidase 12
mm9_v1_chr17_+_26551909_26551909	0.91121	NHLH1,2.p2	DQ839448|Neurl1b|240055|neuralized homolog 1b (Drosophila)	GQ414760|Neurl1b|240055|neuralized homolog 1b (Drosophila)	NM_001081656|Neurl1b|240055|neuralized homolog 1b (Drosophila)
mm9_v1_chr2_+_174155506_174155512	0.909405	NHLH1,2.p2	BC034446|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr7_-_29123724_29123770	0.908876	NHLH1,2.p2	AK146583|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	AK145465|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	BC007132|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	NM_013676|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	U88539|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	BC057449|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	AK146055|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	AK146453|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	AK159786|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	AK145117|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)
mm9_v1_chr16_+_20611864_20611866	0.908862	NHLH1,2.p2	AF489569|Ece2|107522|endothelin converting enzyme 2	AF489570|Ece2|107522|endothelin converting enzyme 2
mm9_v1_chr18_-_43532846_43532925	0.90832	NHLH1,2.p2	AK161509|Dpysl3|22240|dihydropyrimidinase-like 3	AK077000|Dpysl3|22240|dihydropyrimidinase-like 3	AK133040|Dpysl3|22240|dihydropyrimidinase-like 3	NM_001136086|Dpysl3|22240|dihydropyrimidinase-like 3
mm9_v1_chr9_-_102256962_102257026	0.907591	NHLH1,2.p2	BC057301|Ephb1|270190|Eph receptor B1	AK135018|Ephb1|270190|Eph receptor B1	AK033966|Ephb1|270190|Eph receptor B1	AK036211|Ephb1|270190|Eph receptor B1	AK082061|Ephb1|270190|Eph receptor B1	AK039530|Ephb1|270190|Eph receptor B1	NM_001168296|Ephb1|270190|Eph receptor B1	NM_173447|Ephb1|270190|Eph receptor B1
mm9_v1_chr11_+_6289339_6289394	0.906111	NHLH1,2.p2	NM_028601|Zmiz2|52915|zinc finger, MIZ-type containing 2
mm9_v1_chr10_-_127935725_127935761	0.905702	NHLH1,2.p2	BC037527|Myl6b|216459|myosin, light polypeptide 6B	NM_172259|Myl6b|216459|myosin, light polypeptide 6B
mm9_v1_chr5_-_149363603_149363821	0.905116	NHLH1,2.p2	AF044223|Ubl3|24109|ubiquitin-like 3	AK134598|Ubl3|24109|ubiquitin-like 3
mm9_v1_chr11_-_98636689_98636697	0.904748	NHLH1,2.p2	AK154931|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK155597|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1
mm9_v1_chr3_-_55987612_55987634	0.903809	NHLH1,2.p2	NM_030595|Nbea|26422|neurobeachin	Y18276|Nbea|26422|neurobeachin
mm9_v1_chr9_-_44128228_44128398	0.901888	NHLH1,2.p2	BC060156|C2cd2l|71764|C2 calcium-dependent domain containing 2-like	AK039220|C2cd2l|71764|C2 calcium-dependent domain containing 2-like	AK153804|C2cd2l|71764|C2 calcium-dependent domain containing 2-like	NM_027909|C2cd2l|71764|C2 calcium-dependent domain containing 2-like	AK004920|C2cd2l|71764|C2 calcium-dependent domain containing 2-like
mm9_v1_chrX_-_101396356_101396482	0.901203	NHLH1,2.p2	AK220439|C77370|245555|expressed sequence C77370	DQ975302|C77370|245555|expressed sequence C77370	DQ975303|C77370|245555|expressed sequence C77370	NM_001077354|C77370|245555|expressed sequence C77370	AK038635|C77370|245555|expressed sequence C77370
mm9_v1_chr17_+_23810844_23810967	0.900531	NHLH1,2.p2	AK003865|Hcfc1r1|353502|host cell factor C1 regulator 1 (XPO1-dependent)	BC079865|Hcfc1r1|353502|host cell factor C1 regulator 1 (XPO1-dependent)
mm9_v1_chr5_+_138721736_138721806	0.900375	NHLH1,2.p2	BC060184|Stag3|50878|stromal antigen 3	NM_016964|Stag3|50878|stromal antigen 3	AK145898|Stag3|50878|stromal antigen 3	AK158240|Stag3|50878|stromal antigen 3	AJ005678|Stag3|50878|stromal antigen 3	BC139010|Stag3|50878|stromal antigen 3	BC139011|Stag3|50878|stromal antigen 3
mm9_v1_chr19_-_21547035_21547063	0.900152	NHLH1,2.p2	AF369880|Gda|14544|guanine deaminase	AF369881|Gda|14544|guanine deaminase	AF369882|Gda|14544|guanine deaminase	AF369883|Gda|14544|guanine deaminase	AF369884|Gda|14544|guanine deaminase	BC076583|Gda|14544|guanine deaminase
mm9_v1_chr11_-_50745128_50745136	0.899453	NHLH1,2.p2	AK148756|Zfp354b|27274|zinc finger protein 354B	NM_013744|Zfp354b|27274|zinc finger protein 354B
mm9_v1_chr1_-_34899809_34899850	0.898537	NHLH1,2.p2	BC043098|Fam168b|214469|family with sequence similarity 168, member B
mm9_v1_chr7_+_80885175_80885216	0.898508	NHLH1,2.p2	NM_001162532|Fam174b|100038347|family with sequence similarity 174, member B
mm9_v1_chr10_+_61245998_61246044	0.897784	NHLH1,2.p2	
mm9_v1_chr7_+_106529922_106529967	0.8966	NHLH1,2.p2	AK154771|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5
mm9_v1_chr6_-_120443824_120443824	0.896365	NHLH1,2.p2	AF277399|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	BC137862|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	NM_033567|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)
mm9_v1_chr1_+_131169878_131169880	0.896017	NHLH1,2.p2	AK052119|Thsd7b|210417|thrombospondin, type I, domain containing 7B	NM_172485|Thsd7b|210417|thrombospondin, type I, domain containing 7B
mm9_v1_chr9_-_106368268_106368278	0.895864	NHLH1,2.p2	NM_001159652|Gpr62|436090|G protein-coupled receptor 62
mm9_v1_chr14_-_45839064_45839076	0.895714	NHLH1,2.p2	AK039945|Txndc16|70561|thioredoxin domain containing 16	AK046466|Txndc16|70561|thioredoxin domain containing 16	NM_172597|Txndc16|70561|thioredoxin domain containing 16	BC060101|Txndc16|70561|thioredoxin domain containing 16	AK164111|Txndc16|70561|thioredoxin domain containing 16
mm9_v1_chr12_-_8505780_8505995	0.895006	NHLH1,2.p2	AK215498|Rhob|11852|ras homolog gene family, member B	AK148834|Rhob|11852|ras homolog gene family, member B	AK184048|Rhob|11852|ras homolog gene family, member B	AK013784|Rhob|11852|ras homolog gene family, member B
mm9_v1_chr2_+_155207581_155207616	0.893843	NHLH1,2.p2	AJ297793|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK146589|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	BC043086|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	NM_178111|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK149495|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr9_-_63605745_63605800	0.890848	NHLH1,2.p2	AK048626|Smad3|17127|MAD homolog 3 (Drosophila)	NM_016769|Smad3|17127|MAD homolog 3 (Drosophila)
mm9_v1_chr4_-_133101912_133101941	0.890624	NHLH1,2.p2	NM_010948|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)
mm9_v1_chr2_-_117168409_117168515	0.889453	NHLH1,2.p2	AF106070|Rasgrp1|19419|RAS guanyl releasing protein 1
mm9_v1_chr19_-_4283047_4283120	0.889234	NHLH1,2.p2	BC058982|Ankrd13d|68423|ankyrin repeat domain 13 family, member D
mm9_v1_chr12_-_29382024_29382106	0.888416	NHLH1,2.p2	BC002235|Ttc15|217449|tetratricopeptide repeat domain 15
mm9_v1_chr1_-_136229504_136229504	0.887645	NHLH1,2.p2	EU568872|Ppfia4|68507|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	NM_001144855|Ppfia4|68507|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
mm9_v1_chr19_-_38199737_38199810	0.886169	NHLH1,2.p2	BC093529|Rbp4|19662|retinol binding protein 4, plasma	NM_001159487|Rbp4|19662|retinol binding protein 4, plasma
mm9_v1_chr2_+_54288789_54288827	0.884653	NHLH1,2.p2	AK035964|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	AK030726|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	AK038387|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	AK045417|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	NM_173030|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13
mm9_v1_chr3_+_84470113_84470209	0.883301	NHLH1,2.p2	AK081441|Tmem154|320782|transmembrane protein 154	NM_177260|Tmem154|320782|transmembrane protein 154	AK171510|Tmem154|320782|transmembrane protein 154	BC113174|Tmem154|320782|transmembrane protein 154	BC113175|Tmem154|320782|transmembrane protein 154	AK154236|Tmem154|320782|transmembrane protein 154	AK037111|Tmem154|320782|transmembrane protein 154
mm9_v1_chr10_+_42221829_42221920	0.882245	NHLH1,2.p2	AK013183|Snx3|54198|sorting nexin 3	NM_017472|Snx3|54198|sorting nexin 3
mm9_v1_chr12_-_60319986_60320049	0.880311	NHLH1,2.p2	BC025217|Fbxo33|70611|F-box protein 33
mm9_v1_chr19_-_7015682_7015704	0.878445	NHLH1,2.p2	NM_001177360|Gpr137|107173|G protein-coupled receptor 137	NM_207220|Gpr137|107173|G protein-coupled receptor 137
mm9_v1_chr11_-_103815334_103815354	0.877778	NHLH1,2.p2	AK042341|Nsf|18195|N-ethylmaleimide sensitive fusion protein	AK049281|Nsf|18195|N-ethylmaleimide sensitive fusion protein	AK051430|Nsf|18195|N-ethylmaleimide sensitive fusion protein	AK141986|Nsf|18195|N-ethylmaleimide sensitive fusion protein	AK153905|Nsf|18195|N-ethylmaleimide sensitive fusion protein
mm9_v1_chr1_+_97210162_97210393	0.877609	NHLH1,2.p2	BC021428|Fam174a|67698|family with sequence similarity 174, member A	AK084861|Fam174a|67698|family with sequence similarity 174, member A	NM_026321|Fam174a|67698|family with sequence similarity 174, member A	AK009797|Fam174a|67698|family with sequence similarity 174, member A	AK017318|Fam174a|67698|family with sequence similarity 174, member A	AK009892|Fam174a|67698|family with sequence similarity 174, member A	AK020633|Fam174a|67698|family with sequence similarity 174, member A	AK148807|Fam174a|67698|family with sequence similarity 174, member A	AK033948|Fam174a|67698|family with sequence similarity 174, member A	AB154249|Fam174a|67698|family with sequence similarity 174, member A
mm9_v1_chr9_+_108698323_108698461	0.876377	NHLH1,2.p2	BC039922|Ip6k2|76500|inositol hexaphosphate kinase 2	NM_029634|Ip6k2|76500|inositol hexaphosphate kinase 2	BC060059|Ip6k2|76500|inositol hexaphosphate kinase 2
mm9_v1_chr9_+_108472210_108472254	0.875769	NHLH1,2.p2	AK149963|Dalrd3|67789|DALR anticodon binding domain containing 3	NM_026378|Dalrd3|67789|DALR anticodon binding domain containing 3	AK002439|Dalrd3|67789|DALR anticodon binding domain containing 3	AK171818|Dalrd3|67789|DALR anticodon binding domain containing 3	AK169405|Dalrd3|67789|DALR anticodon binding domain containing 3	BC013483|Dalrd3|67789|DALR anticodon binding domain containing 3
mm9_v1_chr4_+_151460980_151461016	0.875768	NHLH1,2.p2	AK154912|Plekhg5|269608|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
mm9_v1_chr19_-_37281951_37281997	0.873039	NHLH1,2.p2	AB093274|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	AK044639|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	AK161513|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3
mm9_v1_chr2_-_112208115_112208198	0.872759	NHLH1,2.p2	AK167745|Tmem85|68032|transmembrane protein 85	BC051926|Tmem85|68032|transmembrane protein 85	AK003668|Tmem85|68032|transmembrane protein 85	AK012047|Tmem85|68032|transmembrane protein 85	AK078165|Tmem85|68032|transmembrane protein 85	NM_026519|Tmem85|68032|transmembrane protein 85
mm9_v1_chr3_-_32264572_32264614	0.872533	NHLH1,2.p2	NM_009517|Zmat3|22401|zinc finger matrin type 3	BC023726|Zmat3|22401|zinc finger matrin type 3
mm9_v1_chr1_+_107560433_107560513	0.872291	NHLH1,2.p2	AK035724|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	NM_029349|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	NM_173187|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	AK148005|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC051567|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC117950|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC117949|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	AK009628|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene
mm9_v1_chr7_-_29123383_29123453	0.870579	NHLH1,2.p2	BC058598|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)
mm9_v1_chr9_-_79641213_79641236	0.869609	NHLH1,2.p2	AK077065|Tmem30a|69981|transmembrane protein 30A	NM_133718|Tmem30a|69981|transmembrane protein 30A
mm9_v1_chr7_+_106529978_106530041	0.864611	NHLH1,2.p2	AK141189|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5
mm9_v1_chr5_+_137729501_137729514	0.864377	NHLH1,2.p2	AK042335|Ache|11423|acetylcholinesterase	NM_009599|Ache|11423|acetylcholinesterase	AK043748|Ache|11423|acetylcholinesterase	AK140404|Ache|11423|acetylcholinesterase	AK036259|Ache|11423|acetylcholinesterase	AK046080|Ache|11423|acetylcholinesterase	AK036443|Ache|11423|acetylcholinesterase
mm9_v1_chr2_+_76513326_76513402	0.864032	NHLH1,2.p2	BC031110|Plekha3|83435|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	NM_031256|Plekha3|83435|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3
mm9_v1_chr13_+_48356487_48356596	0.863728	NHLH1,2.p2	AK041164|Id4|15904|inhibitor of DNA binding 4
mm9_v1_chrX_+_71550562_71550629	0.863706	NHLH1,2.p2	AK156224|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK036969|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK028880|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK171216|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	BC025606|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK032869|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	BC037598|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1
mm9_v1_chr17_-_24769539_24769566	0.862641	NHLH1,2.p2	AK147487|Tsc2|22084|tuberous sclerosis 2	AK171007|Tsc2|22084|tuberous sclerosis 2	U39818|Tsc2|22084|tuberous sclerosis 2	AK147016|Tsc2|22084|tuberous sclerosis 2	BC052449|Tsc2|22084|tuberous sclerosis 2	BC060701|Tsc2|22084|tuberous sclerosis 2	AK190188|Tsc2|22084|tuberous sclerosis 2	AK170589|Tsc2|22084|tuberous sclerosis 2	AK148062|Tsc2|22084|tuberous sclerosis 2
mm9_v1_chr11_+_80290509_80290569	0.860843	NHLH1,2.p2	AK142868|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK086621|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK141549|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK169667|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK079557|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC050768|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	NM_009871|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK039999|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC058697|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC046823|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK048617|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm9_v1_chr15_+_38591604_38591751	0.859971	NHLH1,2.p2	NM_025494|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK075779|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK129007|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK151237|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK006323|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK168914|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	BC010217|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AB088407|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	U13839|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1
mm9_v1_chr2_-_104334276_104334479	0.85881	NHLH1,2.p2	BC131663|Hipk3|15259|homeodomain interacting protein kinase 3	BC131664|Hipk3|15259|homeodomain interacting protein kinase 3	AF077660|Hipk3|15259|homeodomain interacting protein kinase 3
mm9_v1_chr9_-_55785907_55785932	0.858522	NHLH1,2.p2	AK031358|Scaper|244891|S phase cyclin A-associated protein in the ER	AK049497|Scaper|244891|S phase cyclin A-associated protein in the ER	NM_001081341|Scaper|244891|S phase cyclin A-associated protein in the ER	AK048755|Scaper|244891|S phase cyclin A-associated protein in the ER
mm9_v1_chr15_-_89004279_89004426	0.858157	NHLH1,2.p2	BC158086|Plxnb2|140570|plexin B2	BC172162|Plxnb2|140570|plexin B2	NM_001159521|Plxnb2|140570|plexin B2
mm9_v1_chr7_+_51639464_51639527	0.857952	NHLH1,2.p2	NM_001114116|Syt3|20981|synaptotagmin III	NM_016663|Syt3|20981|synaptotagmin III
mm9_v1_chr16_-_4420415_4420498	0.855928	NHLH1,2.p2	AK156940|Adcy9|11515|adenylate cyclase 9
mm9_v1_chr18_+_24867945_24868023	0.853886	NHLH1,2.p2	AB078608|Fhod3|225288|formin homology 2 domain containing 3	AB078609|Fhod3|225288|formin homology 2 domain containing 3	AB100088|Fhod3|225288|formin homology 2 domain containing 3	NM_175276|Fhod3|225288|formin homology 2 domain containing 3	AK148245|Fhod3|225288|formin homology 2 domain containing 3	BC138046|Fhod3|225288|formin homology 2 domain containing 3
mm9_v1_chr19_+_6061181_6061301	0.853495	NHLH1,2.p2	BC092256|Znhit2-ps|29805|zinc finger, HIT domain containing 2, pseudogene	AF119498|Znhit2-ps|29805|zinc finger, HIT domain containing 2, pseudogene	AK086863|Znhit2-ps|29805|zinc finger, HIT domain containing 2, pseudogene	NM_013859|Znhit2-ps|29805|zinc finger, HIT domain containing 2, pseudogene	AK164029|Znhit2-ps|29805|zinc finger, HIT domain containing 2, pseudogene	BC019440|Znhit2-ps|29805|zinc finger, HIT domain containing 2, pseudogene
mm9_v1_chr10_+_127631656_127631826	0.852634	NHLH1,2.p2	BC141115|Gls2|216456|glutaminase 2 (liver, mitochondrial)	NM_001033264|Gls2|216456|glutaminase 2 (liver, mitochondrial)	AK220231|Gls2|216456|glutaminase 2 (liver, mitochondrial)	AK165896|Gls2|216456|glutaminase 2 (liver, mitochondrial)	EU770627|Gls2|216456|glutaminase 2 (liver, mitochondrial)	AK039618|Gls2|216456|glutaminase 2 (liver, mitochondrial)
mm9_v1_chr11_+_77744280_77744540	0.850853	NHLH1,2.p2	AK165757|Sez6|20370|seizure related gene 6	BC055345|Sez6|20370|seizure related gene 6	AK220513|Sez6|20370|seizure related gene 6	AB206791|Sez6|20370|seizure related gene 6	AK032277|Sez6|20370|seizure related gene 6	AK147705|Sez6|20370|seizure related gene 6	BC053011|Sez6|20370|seizure related gene 6	NM_021286|Sez6|20370|seizure related gene 6	D29763|Sez6|20370|seizure related gene 6	D64009|Sez6|20370|seizure related gene 6	D64010|Sez6|20370|seizure related gene 6
mm9_v1_chr17_-_24670527_24670832	0.85042	NHLH1,2.p2	AB232621|Rab26|328778|RAB26, member RAS oncogene family	BC094931|Rab26|328778|RAB26, member RAS oncogene family	AK043912|Rab26|328778|RAB26, member RAS oncogene family	AK080607|Rab26|328778|RAB26, member RAS oncogene family	NM_177375|Rab26|328778|RAB26, member RAS oncogene family	BC118018|Rab26|328778|RAB26, member RAS oncogene family
mm9_v1_chr5_-_31210054_31210143	0.850217	NHLH1,2.p2	BC082316|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	AK002453|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	AK005413|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	AK009384|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	AK010297|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	NM_001134692|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	BC002177|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	AK019285|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	AK002224|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	AK003569|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)
mm9_v1_chr8_-_97666364_97666472	0.849542	NHLH1,2.p2	AK166482|Kifc3|16582|kinesin family member C3	BC070429|Kifc3|16582|kinesin family member C3	NM_001145831|Kifc3|16582|kinesin family member C3	NM_010631|Kifc3|16582|kinesin family member C3	D49546|Kifc3|16582|kinesin family member C3
mm9_v1_chr10_+_74636715_74636718	0.849135	NHLH1,2.p2	AK017213|Bcr|110279|breakpoint cluster region
mm9_v1_chr14_-_76154241_76154387	0.848368	NHLH1,2.p2	AK140362|Cog3|338337|component of oligomeric golgi complex 3	NM_177381|Cog3|338337|component of oligomeric golgi complex 3	BC038030|Cog3|338337|component of oligomeric golgi complex 3
mm9_v1_chr10_+_94039007_94039007	0.848149	NHLH1,2.p2	NM_177026|Tmcc3|319880|transmembrane and coiled coil domains 3
mm9_v1_chr17_+_46339730_46339822	0.848089	NHLH1,2.p2	BC092371|Xpo5|72322|exportin 5	BC055455|Xpo5|72322|exportin 5	AK010389|Xpo5|72322|exportin 5	AF343581|Xpo5|72322|exportin 5	NM_028198|Xpo5|72322|exportin 5	BC131660|Xpo5|72322|exportin 5	BC131661|Xpo5|72322|exportin 5
mm9_v1_chr11_-_88725811_88725842	0.847947	NHLH1,2.p2	BC065135|Akap1|11640|A kinase (PRKA) anchor protein 1
mm9_v1_chr4_-_134260127_134260247	0.847738	NHLH1,2.p2	AK144486|Man1c1|230815|mannosidase, alpha, class 1C, member 1	BC067023|Man1c1|230815|mannosidase, alpha, class 1C, member 1	NM_207237|Man1c1|230815|mannosidase, alpha, class 1C, member 1
mm9_v1_chr8_+_73051648_73051650	0.84656	NHLH1,2.p2	AK153000|Fkbp8|14232|FK506 binding protein 8	AK165281|Fkbp8|14232|FK506 binding protein 8	AK146122|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr12_+_70342818_70342879	0.845785	NHLH1,2.p2	AY238938|Klhdc1|271005|kelch domain containing 1	NM_178253|Klhdc1|271005|kelch domain containing 1	BC119567|Klhdc1|271005|kelch domain containing 1	BC119568|Klhdc1|271005|kelch domain containing 1	AK144621|Klhdc1|271005|kelch domain containing 1
mm9_v1_chr4_+_137818150_137818165	0.845493	NHLH1,2.p2	AB008867|Kif17|16559|kinesin family member 17	NM_001190978|Kif17|16559|kinesin family member 17	NM_010623|Kif17|16559|kinesin family member 17
mm9_v1_chr17_-_6079672_6079748	0.845419	NHLH1,2.p2	AK162246|Serac1|321007|serine active site containing 1	AK154605|Serac1|321007|serine active site containing 1	AK170498|Serac1|321007|serine active site containing 1	AK019677|Serac1|321007|serine active site containing 1	BC119594|Serac1|321007|serine active site containing 1	BC119595|Serac1|321007|serine active site containing 1	NM_001111017|Serac1|321007|serine active site containing 1	NM_177311|Serac1|321007|serine active site containing 1	AK155571|Serac1|321007|serine active site containing 1
mm9_v1_chrX_+_132804791_132804829	0.844118	NHLH1,2.p2	NM_001110233|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1	NM_001110234|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1	NM_009750|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr16_+_20590162_20590218	0.843723	NHLH1,2.p2	AK048916|Vwa5b2|328643|von Willebrand factor A domain containing 5B2	BC052055|Vwa5b2|328643|von Willebrand factor A domain containing 5B2
mm9_v1_chr6_+_29417738_29417806	0.84254	NHLH1,2.p2	AK152929|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	AK007327|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	NM_025381|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	AK003419|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	AK152153|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	AK152959|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F
mm9_v1_chrX_-_152057864_152057869	0.839461	NHLH1,2.p2	BC116313|Ptchd1|211612|patched domain containing 1	BC116312|Ptchd1|211612|patched domain containing 1	NM_001093750|Ptchd1|211612|patched domain containing 1
mm9_v1_chr18_+_10325174_10325177	0.839279	NHLH1,2.p2	AK142556|Greb1l|381157|growth regulation by estrogen in breast cancer-like	NM_001083628|Greb1l|381157|growth regulation by estrogen in breast cancer-like
mm9_v1_chr9_+_120401723_120401758	0.837468	NHLH1,2.p2	NM_026892|Eif1b|68969|eukaryotic translation initiation factor 1B	AK013965|Eif1b|68969|eukaryotic translation initiation factor 1B	BC033505|Eif1b|68969|eukaryotic translation initiation factor 1B	AK005192|Eif1b|68969|eukaryotic translation initiation factor 1B
mm9_v1_chr4_-_133101802_133101911	0.837113	NHLH1,2.p2	Y15522|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	X81443|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	BC011253|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK012777|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK032673|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK012321|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK146323|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)
mm9_v1_chr12_+_56937309_56937356	0.836249	NHLH1,2.p2	AK154678|Brms1l|52592|breast cancer metastasis-suppressor 1-like	AK155742|Brms1l|52592|breast cancer metastasis-suppressor 1-like	NM_001037756|Brms1l|52592|breast cancer metastasis-suppressor 1-like
mm9_v1_chr2_+_170321927_170322026	0.836218	NHLH1,2.p2	BC065407|Pfdn4|109054|prefoldin 4	NM_001013369|Pfdn4|109054|prefoldin 4	BC147673|Pfdn4|109054|prefoldin 4	BC147674|Pfdn4|109054|prefoldin 4
mm9_v1_chr2_-_166539223_166539286	0.834401	NHLH1,2.p2	BC151074|Prex1|277360|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	BC157940|Prex1|277360|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
mm9_v1_chr7_-_52494097_52494243	0.833259	NHLH1,2.p2	CT010217|Cd37|12493|CD37 antigen	BC004610|Cd37|12493|CD37 antigen	BC031724|Cd37|12493|CD37 antigen	AK155966|Cd37|12493|CD37 antigen	AK155663|Cd37|12493|CD37 antigen	NM_007645|Cd37|12493|CD37 antigen	AK154250|Cd37|12493|CD37 antigen
mm9_v1_chr5_+_145844689_145844781	0.83302	NHLH1,2.p2	AB024984|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	NM_019767|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	AK003986|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	AK145663|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	AK076107|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	BC001988|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	AK002475|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A
mm9_v1_chr11_+_78279202_78279242	0.832991	NHLH1,2.p2	NM_026740|Slc46a1|52466|solute carrier family 46, member 1	AK170505|Slc46a1|52466|solute carrier family 46, member 1	BC057976|Slc46a1|52466|solute carrier family 46, member 1	AK003278|Slc46a1|52466|solute carrier family 46, member 1	AK220201|Slc46a1|52466|solute carrier family 46, member 1
mm9_v1_chr7_-_4636519_4636597	0.83179	NHLH1,2.p2	AK088469|Hspbp1|66245|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	AK013263|Hspbp1|66245|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	BC014758|Hspbp1|66245|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	NM_024172|Hspbp1|66245|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
mm9_v1_chr1_+_193542261_193542399	0.831624	NHLH1,2.p2	NM_001134829|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	AK172914|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	BC013667|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1
mm9_v1_chr7_+_52965052_52965376	0.831098	NHLH1,2.p2	AK192990|Dbp|13170|D site albumin promoter binding protein
mm9_v1_chr18_-_6240993_6241298	0.828477	NHLH1,2.p2	AK185672|Kif5b|16573|kinesin family member 5B	AK177424|Kif5b|16573|kinesin family member 5B	L27153|Kif5b|16573|kinesin family member 5B
mm9_v1_chr6_+_61130318_61130318	0.828229	NHLH1,2.p2	NM_001164316|Fam190a|232035|family with sequence similarity 190, member A	NM_183310|Fam190a|232035|family with sequence similarity 190, member A
mm9_v1_chr19_-_4283126_4283138	0.82788	NHLH1,2.p2	AK089186|Ankrd13d|68423|ankyrin repeat domain 13 family, member D	AK155698|Ankrd13d|68423|ankyrin repeat domain 13 family, member D	NM_026720|Ankrd13d|68423|ankyrin repeat domain 13 family, member D
mm9_v1_chr1_+_95582188_95582371	0.827803	NHLH1,2.p2	AK156243|Bok|51800|BCL2-related ovarian killer protein	NM_016778|Bok|51800|BCL2-related ovarian killer protein	AF027707|Bok|51800|BCL2-related ovarian killer protein	AK171258|Bok|51800|BCL2-related ovarian killer protein	BC030069|Bok|51800|BCL2-related ovarian killer protein	AK168373|Bok|51800|BCL2-related ovarian killer protein
mm9_v1_chr8_+_75095914_75096060	0.826617	NHLH1,2.p2	AK157969|Tmem38a|74166|transmembrane protein 38A	AK165818|Tmem38a|74166|transmembrane protein 38A	EF988666|Tmem38a|74166|transmembrane protein 38A	BC014728|Tmem38a|74166|transmembrane protein 38A	AK034868|Nwd1|319555|NACHT and WD repeat domain containing 1	BC024788|Tmem38a|74166|transmembrane protein 38A	NM_144534|Tmem38a|74166|transmembrane protein 38A	AB261158|Tmem38a|74166|transmembrane protein 38A
mm9_v1_chr9_-_45714409_45714473	0.825867	NHLH1,2.p2	BC094247|Rnf214|235315|ring finger protein 214	AK033867|Rnf214|235315|ring finger protein 214
mm9_v1_chr17_-_65962616_65962686	0.825734	NHLH1,2.p2	AF115503|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK012357|Vapa|30960|vesicle-associated membrane protein, associated protein A
mm9_v1_chr17_-_46811556_46811599	0.825253	NHLH1,2.p2	
mm9_v1_chr10_+_20672352_20672469	0.82525	NHLH1,2.p2	AK080373|Ahi1|52906|Abelson helper integration site 1	NM_026203|Ahi1|52906|Abelson helper integration site 1	AK005991|Ahi1|52906|Abelson helper integration site 1	AK013997|Ahi1|52906|Abelson helper integration site 1	AK019416|Ahi1|52906|Abelson helper integration site 1	BC106130|Ahi1|52906|Abelson helper integration site 1	BC065146|Ahi1|52906|Abelson helper integration site 1	AK036336|Ahi1|52906|Abelson helper integration site 1	AY133241|Ahi1|52906|Abelson helper integration site 1
mm9_v1_chr7_-_135078992_135079041	0.823547	NHLH1,2.p2	AK021185|Prss36|77613|protease, serine, 36
mm9_v1_chr3_+_141128527_141128634	0.822873	NHLH1,2.p2	NM_009472|Unc5c|22253|unc-5 homolog C (C. elegans)	U72634|Unc5c|22253|unc-5 homolog C (C. elegans)	BC115772|Unc5c|22253|unc-5 homolog C (C. elegans)	AK031655|Unc5c|22253|unc-5 homolog C (C. elegans)	AK034558|Unc5c|22253|unc-5 homolog C (C. elegans)	AK035038|Unc5c|22253|unc-5 homolog C (C. elegans)	AK045251|Unc5c|22253|unc-5 homolog C (C. elegans)	AK141181|Unc5c|22253|unc-5 homolog C (C. elegans)	AK142411|Unc5c|22253|unc-5 homolog C (C. elegans)	AK164239|Unc5c|22253|unc-5 homolog C (C. elegans)	AK142974|Unc5c|22253|unc-5 homolog C (C. elegans)
mm9_v1_chr8_+_113245378_113245384	0.822703	NHLH1,2.p2	BC060632|Mtss1l|244654|metastasis suppressor 1-like	NM_198625|Mtss1l|244654|metastasis suppressor 1-like
mm9_v1_chr17_-_23701167_23701225	0.821722	NHLH1,2.p2	NM_001033496|Zfp213|449521|zinc finger protein 213
mm9_v1_chrX_-_20194689_20194694	0.821159	NHLH1,2.p2	NM_019435|Ndufb11|104130|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11
mm9_v1_chr3_-_51212856_51212915	0.81978	NHLH1,2.p2	BC051933|Ndufc1|66377|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1	AK003365|Ndufc1|66377|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1	AK018705|Ndufc1|66377|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1	AK028011|Ndufc1|66377|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1	BC092141|Ndufc1|66377|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1	AK009393|Ndufc1|66377|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1	NM_025523|Ndufc1|66377|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1
mm9_v1_chrX_+_8777098_8777242	0.818765	NHLH1,2.p2	AK031623|Lancl3|236285|LanC lantibiotic synthetase component C-like 3 (bacterial)	NM_173414|Lancl3|236285|LanC lantibiotic synthetase component C-like 3 (bacterial)	BC115944|Lancl3|236285|LanC lantibiotic synthetase component C-like 3 (bacterial)
mm9_v1_chr18_-_63851841_63852091	0.818204	NHLH1,2.p2	AF052660|Txnl1|53382|thioredoxin-like 1	AK144211|Txnl1|53382|thioredoxin-like 1	AK150326|Txnl1|53382|thioredoxin-like 1	AK168712|Txnl1|53382|thioredoxin-like 1	AK150887|Txnl1|53382|thioredoxin-like 1	AK152101|Txnl1|53382|thioredoxin-like 1	AK150983|Txnl1|53382|thioredoxin-like 1	AK167954|Txnl1|53382|thioredoxin-like 1	AK051698|Txnl1|53382|thioredoxin-like 1	AK029807|Txnl1|53382|thioredoxin-like 1	NM_016792|Txnl1|53382|thioredoxin-like 1	BC061123|Txnl1|53382|thioredoxin-like 1
mm9_v1_chr3_-_19062922_19063101	0.813416	NHLH1,2.p2	AK208595|Armc1|74252|armadillo repeat containing 1	AK213606|Armc1|74252|armadillo repeat containing 1	AK144184|Armc1|74252|armadillo repeat containing 1	AK079299|Armc1|74252|armadillo repeat containing 1	AK167233|Armc1|74252|armadillo repeat containing 1	BC051067|Armc1|74252|armadillo repeat containing 1	BC021451|Armc1|74252|armadillo repeat containing 1	NM_028840|Armc1|74252|armadillo repeat containing 1	AK009402|Armc1|74252|armadillo repeat containing 1	AK082783|Armc1|74252|armadillo repeat containing 1	AK145993|Armc1|74252|armadillo repeat containing 1
mm9_v1_chr14_-_73785067_73785067	0.813248	NHLH1,2.p2	AK005125|Itm2b|16432|integral membrane protein 2B	AK152731|Itm2b|16432|integral membrane protein 2B	AK159962|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr2_+_35477498_35477550	0.81179	NHLH1,2.p2	AK147593|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	NM_001114124|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr1_+_169528706_169528770	0.811667	NHLH1,2.p2	X66225|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr12_+_111839571_111839706	0.810797	NHLH1,2.p2	NM_030238|Dync1h1|13424|dynein cytoplasmic 1 heavy chain 1	AY004877|Dync1h1|13424|dynein cytoplasmic 1 heavy chain 1	AK045747|Dync1h1|13424|dynein cytoplasmic 1 heavy chain 1	AK052908|Dync1h1|13424|dynein cytoplasmic 1 heavy chain 1
mm9_v1_chr8_-_127187268_127187334	0.810511	NHLH1,2.p2	BC058626|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	NM_175149|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene
mm9_v1_chr14_+_47504276_47504358	0.809949	NHLH1,2.p2	AK034323|Samd4|74480|sterile alpha motif domain containing 4
mm9_v1_chr8_+_85689250_85689250	0.808608	NHLH1,2.p2	AK049049|Tbc1d9|71310|TBC1 domain family, member 9	NM_001111304|Tbc1d9|71310|TBC1 domain family, member 9	NM_027758|Tbc1d9|71310|TBC1 domain family, member 9
mm9_v1_chr4_-_3501974_3502001	0.808415	NHLH1,2.p2	AK165916|Tmem68|72098|transmembrane protein 68	AK166237|Tmem68|72098|transmembrane protein 68
mm9_v1_chr16_+_31428833_31428879	0.807938	NHLH1,2.p2	AK146321|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	AK145711|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	NM_001122683|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	AK146962|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr16_-_96304116_96304132	0.807604	NHLH1,2.p2	BC056618|Brwd1|93871|bromodomain and WD repeat domain containing 1
mm9_v1_chr14_+_63741339_63741389	0.807557	NHLH1,2.p2	AK002456|Ctsb|13030|cathepsin B	AK170968|Ctsb|13030|cathepsin B	AK147192|Ctsb|13030|cathepsin B	AK149884|Ctsb|13030|cathepsin B	AK153047|Ctsb|13030|cathepsin B	AK151790|Ctsb|13030|cathepsin B
mm9_v1_chr15_+_99532698_99532771	0.807262	NHLH1,2.p2	NM_031842|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC059921|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	M25773|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	U66620|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC079839|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr8_+_72826656_72826705	0.806305	NHLH1,2.p2	AK003458|Cope|59042|coatomer protein complex, subunit epsilon	AK140753|Cope|59042|coatomer protein complex, subunit epsilon	BC009170|Cope|59042|coatomer protein complex, subunit epsilon	AB039837|Cope|59042|coatomer protein complex, subunit epsilon	NM_021538|Cope|59042|coatomer protein complex, subunit epsilon	AK083279|Cope|59042|coatomer protein complex, subunit epsilon	BC057328|Cope|59042|coatomer protein complex, subunit epsilon	BC083336|Cope|59042|coatomer protein complex, subunit epsilon
mm9_v1_chr10_-_77707385_77707420	0.806035	NHLH1,2.p2	AK166500|Trappc10|216131|trafficking protein particle complex 10	NM_001081055|Trappc10|216131|trafficking protein particle complex 10
mm9_v1_chr13_-_53076251_53076471	0.805062	NHLH1,2.p2	BC031377|Nfil3|18030|nuclear factor, interleukin 3, regulated	AK087541|Nfil3|18030|nuclear factor, interleukin 3, regulated	NM_017373|Nfil3|18030|nuclear factor, interleukin 3, regulated
mm9_v1_chr6_-_116143380_116143517	0.804737	NHLH1,2.p2	AK173022|Tmcc1|330401|transmembrane and coiled coil domains 1	NM_177412|Tmcc1|330401|transmembrane and coiled coil domains 1
mm9_v1_chr2_-_25947915_25947915	0.804048	NHLH1,2.p2	NM_001037098|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr18_-_6241497_6241528	0.803991	NHLH1,2.p2	BC069920|Kif5b|16573|kinesin family member 5B	BC090841|Kif5b|16573|kinesin family member 5B	BC040800|Kif5b|16573|kinesin family member 5B	AK133535|Kif5b|16573|kinesin family member 5B	AK136307|Kif5b|16573|kinesin family member 5B	NM_008448|Kif5b|16573|kinesin family member 5B
mm9_v1_chr1_+_62749850_62750115	0.803326	NHLH1,2.p2	NM_001077403|Nrp2|18187|neuropilin 2	NM_001077404|Nrp2|18187|neuropilin 2	NM_001077405|Nrp2|18187|neuropilin 2	NM_001077406|Nrp2|18187|neuropilin 2	NM_001077407|Nrp2|18187|neuropilin 2	NM_010939|Nrp2|18187|neuropilin 2	AK149643|Nrp2|18187|neuropilin 2	AK051873|Nrp2|18187|neuropilin 2
mm9_v1_chr19_-_4121444_4121482	0.803231	NHLH1,2.p2	BC075614|Aip|11632|aryl-hydrocarbon receptor-interacting protein	AK011609|Aip|11632|aryl-hydrocarbon receptor-interacting protein
mm9_v1_chr6_+_54987993_54988082	0.803033	NHLH1,2.p2	NM_180678|Gars|353172|glycyl-tRNA synthetase	AK012758|Gars|353172|glycyl-tRNA synthetase	BC021747|Gars|353172|glycyl-tRNA synthetase	AK146238|Gars|353172|glycyl-tRNA synthetase	AK165857|Gars|353172|glycyl-tRNA synthetase
mm9_v1_chr13_-_108680257_108680267	0.802362	NHLH1,2.p2	NM_145456|Zswim6|67263|zinc finger, SWIM domain containing 6
mm9_v1_chr1_+_194014677_194014800	0.800312	NHLH1,2.p2	AK140193|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_001038607|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_010600|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	U04294|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109012|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109013|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm9_v1_chr15_-_90509751_90509818	0.800217	NHLH1,2.p2	AK005311|Cpne8|66871|copine VIII	BC076564|Cpne8|66871|copine VIII	BC017626|Cpne8|66871|copine VIII	AK013407|Cpne8|66871|copine VIII	AK004559|Cpne8|66871|copine VIII	BC138745|Cpne8|66871|copine VIII	BC138746|Cpne8|66871|copine VIII	AK010227|Cpne8|66871|copine VIII	BC048551|Cpne8|66871|copine VIII	NM_001033851|Cpne8|66871|copine VIII	NM_025815|Cpne8|66871|copine VIII
mm9_v1_chr4_+_48058102_48058256	0.799609	NHLH1,2.p2	BC038520|Nr4a3|18124|nuclear receptor subfamily 4, group A, member 3	BC068150|Nr4a3|18124|nuclear receptor subfamily 4, group A, member 3
mm9_v1_chr5_-_125870095_125870129	0.798318	NHLH1,2.p2	BC036303|Ubc|22190|ubiquitin C	D50527|Ubc|22190|ubiquitin C	BC006680|Ubc|22190|ubiquitin C	BC008661|Ubc|22190|ubiquitin C	BC021837|Ubc|22190|ubiquitin C	BC094012|Ubc|22190|ubiquitin C	BC025894|Ubc|22190|ubiquitin C	AK010964|Ubc|22190|ubiquitin C	AK168448|Ubc|22190|ubiquitin C
mm9_v1_chr1_-_159342713_159342735	0.798168	NHLH1,2.p2	AK039584|Rasal2|226525|RAS protein activator like 2	NM_177644|Rasal2|226525|RAS protein activator like 2
mm9_v1_chr2_+_119568028_119568087	0.797698	NHLH1,2.p2	BC027291|Itpka|228550|inositol 1,4,5-trisphosphate 3-kinase A	NM_146125|Itpka|228550|inositol 1,4,5-trisphosphate 3-kinase A
mm9_v1_chr10_+_110943762_110943906	0.796064	NHLH1,2.p2	BC010295|Phlda1|21664|pleckstrin homology-like domain, family A, member 1	AK184242|Phlda1|21664|pleckstrin homology-like domain, family A, member 1	AK199350|Phlda1|21664|pleckstrin homology-like domain, family A, member 1
mm9_v1_chr5_+_134659874_134659999	0.795856	NHLH1,2.p2	AK082488|Gtf2ird2|114674|GTF2I repeat domain containing 2	AY116023|Gtf2ird2|114674|GTF2I repeat domain containing 2	AK081801|Gtf2ird2|114674|GTF2I repeat domain containing 2	BC057179|Gtf2ird2|114674|GTF2I repeat domain containing 2	AY014963|Gtf2ird2|114674|GTF2I repeat domain containing 2	NM_053266|Gtf2ird2|114674|GTF2I repeat domain containing 2	BC132157|Gtf2ird2|114674|GTF2I repeat domain containing 2	BC132159|Gtf2ird2|114674|GTF2I repeat domain containing 2
mm9_v1_chr3_-_138738059_138738141	0.795426	NHLH1,2.p2	AK164159|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	AK166315|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	AK154852|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	AK155793|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	AK160989|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	AK052125|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1
mm9_v1_chr2_+_90780665_90780699	0.795114	NHLH1,2.p2	BC021393|Celf1|13046|CUGBP, Elav-like family member 1
mm9_v1_chr1_-_158135155_158135155	0.794562	NHLH1,2.p2	AK039197|Fam163a|329274|family with sequence similarity 163, member A	NM_177838|Fam163a|329274|family with sequence similarity 163, member A
mm9_v1_chr4_-_70195870_70195917	0.794207	NHLH1,2.p2	BC088994|Megf9|230316|multiple EGF-like-domains 9	BC138128|Megf9|230316|multiple EGF-like-domains 9	BC138129|Megf9|230316|multiple EGF-like-domains 9
mm9_v1_chr13_-_23666058_23666058	0.792776	NHLH1,2.p2	NM_178195|Hist1h2bf|319180|histone cluster 1, H2bf
mm9_v1_chrX_+_132804857_132804862	0.789145	NHLH1,2.p2	AK208231|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1	AK004531|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr17_+_73185961_73186089	0.788277	NHLH1,2.p2	AK167998|Ypel5|383295|yippee-like 5 (Drosophila)	AK165943|Ypel5|383295|yippee-like 5 (Drosophila)	AK169241|Ypel5|383295|yippee-like 5 (Drosophila)	AK049096|Ypel5|383295|yippee-like 5 (Drosophila)	AK171010|Ypel5|383295|yippee-like 5 (Drosophila)	NM_027166|Ypel5|383295|yippee-like 5 (Drosophila)	AK046281|Ypel5|383295|yippee-like 5 (Drosophila)	AK049644|Ypel5|383295|yippee-like 5 (Drosophila)	AK169986|Ypel5|383295|yippee-like 5 (Drosophila)	AK137446|Ypel5|383295|yippee-like 5 (Drosophila)	AK010201|Ypel5|383295|yippee-like 5 (Drosophila)
mm9_v1_chr6_-_72566993_72566993	0.78826	NHLH1,2.p2	AK076586|Tgoln1|22134|trans-golgi network protein	NM_009443|Tgoln1|22134|trans-golgi network protein
mm9_v1_chrX_+_132804834_132804853	0.78816	NHLH1,2.p2	AK003294|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr15_-_103164744_103164757	0.786976	NHLH1,2.p2	BC017644|Zfp385a|29813|zinc finger protein 385A
mm9_v1_chr12_+_27154043_27154079	0.785875	NHLH1,2.p2	BC048910|Cmpk2|22169|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	NM_020557|Cmpk2|22169|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial
mm9_v1_chr2_-_25080180_25080221	0.785562	NHLH1,2.p2	NM_146116|Tubb2c|227613|tubulin, beta 2C
mm9_v1_chr1_-_175263540_175263633	0.785366	NHLH1,2.p2	AY289754|Darc|13349|Duffy blood group, chemokine receptor	AY291295|Darc|13349|Duffy blood group, chemokine receptor	AF016584|Darc|13349|Duffy blood group, chemokine receptor	BC005583|Darc|13349|Duffy blood group, chemokine receptor	AF109159|Darc|13349|Duffy blood group, chemokine receptor	NM_010045|Darc|13349|Duffy blood group, chemokine receptor
mm9_v1_chr18_+_77424738_77424806	0.785098	NHLH1,2.p2	X98014|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	AK078670|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	AK162549|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm9_v1_chr12_-_103943059_103943209	0.784547	NHLH1,2.p2	BC056464|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	AK038913|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	NM_172584|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase
mm9_v1_chr11_-_59041663_59041762	0.783956	NHLH1,2.p2	NM_001130408|Arf1|11840|ADP-ribosylation factor 1	AK152479|Arf1|11840|ADP-ribosylation factor 1	BC021403|Arf1|11840|ADP-ribosylation factor 1	AK170586|Arf1|11840|ADP-ribosylation factor 1	AK151696|Arf1|11840|ADP-ribosylation factor 1	AK168081|Arf1|11840|ADP-ribosylation factor 1	AK167000|Arf1|11840|ADP-ribosylation factor 1	AK151821|Arf1|11840|ADP-ribosylation factor 1	AK152382|Arf1|11840|ADP-ribosylation factor 1	AK152015|Arf1|11840|ADP-ribosylation factor 1	AK167543|Arf1|11840|ADP-ribosylation factor 1	AK169166|Arf1|11840|ADP-ribosylation factor 1	D87898|Arf1|11840|ADP-ribosylation factor 1	AK170092|Arf1|11840|ADP-ribosylation factor 1	AK077542|Arf1|11840|ADP-ribosylation factor 1	AK150699|Arf1|11840|ADP-ribosylation factor 1	AK151223|Arf1|11840|ADP-ribosylation factor 1	AK159174|Arf1|11840|ADP-ribosylation factor 1	AK166628|Arf1|11840|ADP-ribosylation factor 1	AK168686|Arf1|11840|ADP-ribosylation factor 1	AK148873|Arf1|11840|ADP-ribosylation factor 1	AK167931|Arf1|11840|ADP-ribosylation factor 1	AK148458|Arf1|11840|ADP-ribosylation factor 1	AK167129|Arf1|11840|ADP-ribosylation factor 1	AK153132|Arf1|11840|ADP-ribosylation factor 1	AK150092|Arf1|11840|ADP-ribosylation factor 1	AK151225|Arf1|11840|ADP-ribosylation factor 1
mm9_v1_chr11_-_100275977_100276079	0.783527	NHLH1,2.p2	AK029271|Leprel4|66180|leprecan-like 4
mm9_v1_chr8_-_113783097_113783143	0.783189	NHLH1,2.p2	BC021306|Glg1|20340|golgi apparatus protein 1	NM_009149|Glg1|20340|golgi apparatus protein 1	X84037|Glg1|20340|golgi apparatus protein 1	AK154581|Glg1|20340|golgi apparatus protein 1
mm9_v1_chr11_-_78059124_78059213	0.781743	NHLH1,2.p2	BC072657|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)	AK170533|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)	U40375|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)	NM_009297|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)
mm9_v1_chr8_+_87604638_87604668	0.781695	NHLH1,2.p2	AK147129|BC056474|414077|cDNA sequence BC056474
mm9_v1_chr10_-_60294129_60294365	0.779599	NHLH1,2.p2	BC048162|Unc5b|107449|unc-5 homolog B (C. elegans)	BC057560|Unc5b|107449|unc-5 homolog B (C. elegans)	AJ487853|Unc5b|107449|unc-5 homolog B (C. elegans)	AK170513|Unc5b|107449|unc-5 homolog B (C. elegans)	AK154287|Unc5b|107449|unc-5 homolog B (C. elegans)	AK158284|Unc5b|107449|unc-5 homolog B (C. elegans)	AK018177|Unc5b|107449|unc-5 homolog B (C. elegans)	AK154271|Unc5b|107449|unc-5 homolog B (C. elegans)	NM_029770|Unc5b|107449|unc-5 homolog B (C. elegans)
mm9_v1_chr7_+_80885223_80885308	0.779456	NHLH1,2.p2	BC034069|Fam174b|100038347|family with sequence similarity 174, member B
mm9_v1_chr11_-_58768012_58768013	0.77876	NHLH1,2.p2	BC107301|Hist3h2bb-ps|382522|histone cluster 3, H2bb, pseudogene	BC107302|Hist3h2bb-ps|382522|histone cluster 3, H2bb, pseudogene	NM_206882|Hist3h2bb-ps|382522|histone cluster 3, H2bb, pseudogene
mm9_v1_chr7_+_134388006_134388047	0.777962	NHLH1,2.p2	AK090240|Zfp771|244216|zinc finger protein 771	NM_177362|Zfp771|244216|zinc finger protein 771	AK159461|Zfp771|244216|zinc finger protein 771
mm9_v1_chr13_+_93381019_93381074	0.774766	NHLH1,2.p2	AK136799|Serinc5|218442|serine incorporator 5
mm9_v1_chr16_-_85030543_85030555	0.774086	NHLH1,2.p2	AK076506|App|11820|amyloid beta (A4) precursor protein	AK200287|App|11820|amyloid beta (A4) precursor protein	AK203089|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr17_-_43803963_43804162	0.772578	NHLH1,2.p2	AK014394|Slc25a27|74011|solute carrier family 25, member 27	NM_028711|Slc25a27|74011|solute carrier family 25, member 27	BC138993|Slc25a27|74011|solute carrier family 25, member 27	BC138994|Slc25a27|74011|solute carrier family 25, member 27	AB106930|Slc25a27|74011|solute carrier family 25, member 27	AK021314|Slc25a27|74011|solute carrier family 25, member 27	AK043831|Slc25a27|74011|solute carrier family 25, member 27
mm9_v1_chr2_+_145686480_145686484	0.771873	NHLH1,2.p2	AK171064|Rin2|74030|Ras and Rab interactor 2
mm9_v1_chr10_-_79100606_79100662	0.770619	NHLH1,2.p2	AK032878|Shc2|216148|SHC (Src homology 2 domain containing) transforming protein 2	NM_001024539|Shc2|216148|SHC (Src homology 2 domain containing) transforming protein 2
mm9_v1_chr15_-_37909575_37909591	0.770594	NHLH1,2.p2	BC064751|Ubr5|70790|ubiquitin protein ligase E3 component n-recognin 5
mm9_v1_chrX_-_99266499_99266645	0.77014	NHLH1,2.p2	BC132391|Rgag4|331474|retrotransposon gag domain containing 4	BC137795|Rgag4|331474|retrotransposon gag domain containing 4	AK032151|Rgag4|331474|retrotransposon gag domain containing 4	AK220436|Rgag4|331474|retrotransposon gag domain containing 4	NM_183318|Rgag4|331474|retrotransposon gag domain containing 4
mm9_v1_chr19_+_53403902_53404133	0.768718	NHLH1,2.p2	NM_010847|Mxi1|17859|Max interacting protein 1	AK144219|Mxi1|17859|Max interacting protein 1	AK017637|Mxi1|17859|Max interacting protein 1	AK140465|Mxi1|17859|Max interacting protein 1	L38822|Mxi1|17859|Max interacting protein 1	U24674|Mxi1|17859|Max interacting protein 1
mm9_v1_chr19_+_5038825_5038950	0.768356	NHLH1,2.p2	AK158899|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	NM_175383|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	AK050347|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	BC069927|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	AK083857|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
mm9_v1_chr17_-_24769511_24769537	0.767612	NHLH1,2.p2	AK147302|Tsc2|22084|tuberous sclerosis 2	AK148072|Tsc2|22084|tuberous sclerosis 2	AK147874|Tsc2|22084|tuberous sclerosis 2
mm9_v1_chr8_-_13288115_13288156	0.76713	NHLH1,2.p2	BC052676|Dcun1d2|102323|DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	AK040130|Dcun1d2|102323|DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	NM_001024504|Dcun1d2|102323|DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	NM_001042649|Dcun1d2|102323|DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	NM_001042650|Dcun1d2|102323|DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	NM_001042651|Dcun1d2|102323|DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	AK154550|Dcun1d2|102323|DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)
mm9_v1_chr13_+_94074449_94074449	0.765802	NHLH1,2.p2	AF093257|Homer1|26556|homer homolog 1 (Drosophila)	NM_011982|Homer1|26556|homer homolog 1 (Drosophila)	NM_147176|Homer1|26556|homer homolog 1 (Drosophila)
mm9_v1_chr7_-_108025317_108025394	0.764629	NHLH1,2.p2	AK033211|Arhgef17|207212|Rho guanine nucleotide exchange factor (GEF) 17
mm9_v1_chr12_+_33832550_33832590	0.764374	NHLH1,2.p2	NM_028139|Atxn7l1|380753|ataxin 7-like 1
mm9_v1_chr15_+_78707972_78708024	0.764273	NHLH1,2.p2	BC054422|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1	AK170437|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1	AK155195|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1	AK080881|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1	AK159771|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1
mm9_v1_chr6_+_88674821_88674926	0.763891	NHLH1,2.p2	AJ316580|Mgll|23945|monoglyceride lipase
mm9_v1_chr10_-_19571261_19571264	0.763335	NHLH1,2.p2	AK047610|Slc35d3|76157|solute carrier family 35, member D3	NM_029529|Slc35d3|76157|solute carrier family 35, member D3
mm9_v1_chr12_-_47919695_47919761	0.761616	NHLH1,2.p2	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr11_+_58246060_58246060	0.761439	NHLH1,2.p2	NM_001045542|Gm12253|624860|predicted gene 12253
mm9_v1_chr4_-_61869471_61869486	0.759018	NHLH1,2.p2	X89264|Zfp37|22696|zinc finger protein 37
mm9_v1_chr4_-_3501912_3501958	0.7579	NHLH1,2.p2	AK048210|Tmem68|72098|transmembrane protein 68	NM_028097|Tmem68|72098|transmembrane protein 68	BC016240|Tmem68|72098|transmembrane protein 68	AK008493|Tmem68|72098|transmembrane protein 68	AK084881|Tmem68|72098|transmembrane protein 68	AK147765|Tmem68|72098|transmembrane protein 68	AK162563|Tmem68|72098|transmembrane protein 68	AK088600|Tmem68|72098|transmembrane protein 68
mm9_v1_chr5_-_21207158_21207169	0.75734	NHLH1,2.p2	AK041194|Napepld|242864|N-acyl phosphatidylethanolamine phospholipase D	AK080888|Napepld|242864|N-acyl phosphatidylethanolamine phospholipase D	NM_178728|Napepld|242864|N-acyl phosphatidylethanolamine phospholipase D
mm9_v1_chr8_+_3587791_3587801	0.756568	NHLH1,2.p2	BC043081|2310057J16Rik|69697|RIKEN cDNA 2310057J16 gene	BC048787|2310057J16Rik|69697|RIKEN cDNA 2310057J16 gene
mm9_v1_chr5_+_114185982_114186036	0.756551	NHLH1,2.p2	AK044446|Ficd|231630|FIC domain containing	AK054325|Ficd|231630|FIC domain containing
mm9_v1_chr3_-_32264536_32264547	0.756372	NHLH1,2.p2	AF012923|Zmat3|22401|zinc finger matrin type 3
mm9_v1_chr17_-_24987038_24987053	0.755285	NHLH1,2.p2	AK003914|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1	AK044920|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1
mm9_v1_chr9_-_21875603_21875617	0.753002	NHLH1,2.p2	AK089104|Zfp653|319601|zinc finger protein 653
mm9_v1_chr5_-_143084748_143084767	0.752928	NHLH1,2.p2	AK132153|Mmd2|75104|monocyte to macrophage differentiation-associated 2
mm9_v1_chr3_-_69663781_69663817	0.75284	NHLH1,2.p2	AK009973|1110032A04Rik|66183|RIKEN cDNA 1110032A04 gene	BC022628|1110032A04Rik|66183|RIKEN cDNA 1110032A04 gene	AF365876|1110032A04Rik|66183|RIKEN cDNA 1110032A04 gene	AK004017|1110032A04Rik|66183|RIKEN cDNA 1110032A04 gene	AK010117|1110032A04Rik|66183|RIKEN cDNA 1110032A04 gene	NM_001164210|1110032A04Rik|66183|RIKEN cDNA 1110032A04 gene	NM_133675|1110032A04Rik|66183|RIKEN cDNA 1110032A04 gene
mm9_v1_chr7_-_4610551_4610664	0.752749	NHLH1,2.p2	BC053076|Ppp6r1|243819|protein phosphatase 6, regulatory subunit 1	NM_172894|Ppp6r1|243819|protein phosphatase 6, regulatory subunit 1	AK080891|Ppp6r1|243819|protein phosphatase 6, regulatory subunit 1
mm9_v1_chr10_-_80260968_80261046	0.75189	NHLH1,2.p2	BC005565|Plekhj1|78670|pleckstrin homology domain containing, family J member 1	AK150144|Plekhj1|78670|pleckstrin homology domain containing, family J member 1	AK051734|Plekhj1|78670|pleckstrin homology domain containing, family J member 1	AK020621|Plekhj1|78670|pleckstrin homology domain containing, family J member 1
mm9_v1_chr1_-_21951497_21951661	0.750925	NHLH1,2.p2	AF263836|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5	AY679158|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5
mm9_v1_chr18_-_43552694_43552984	0.750378	NHLH1,2.p2	BC023003|Dpysl3|22240|dihydropyrimidinase-like 3	NM_009468|Dpysl3|22240|dihydropyrimidinase-like 3	X87817|Dpysl3|22240|dihydropyrimidinase-like 3
mm9_v1_chr13_-_51662452_51662452	0.75018	NHLH1,2.p2	BC103611|Shc3|20418|src homology 2 domain-containing transforming protein C3	BC103612|Shc3|20418|src homology 2 domain-containing transforming protein C3	BC105644|Shc3|20418|src homology 2 domain-containing transforming protein C3	BC105645|Shc3|20418|src homology 2 domain-containing transforming protein C3	NM_009167|Shc3|20418|src homology 2 domain-containing transforming protein C3	U46854|Shc3|20418|src homology 2 domain-containing transforming protein C3
mm9_v1_chr2_+_19579607_19579745	0.750023	NHLH1,2.p2	NM_027715|Otud1|71198|OTU domain containing 1
mm9_v1_chr17_-_24987063_24987081	0.748789	NHLH1,2.p2	AB041600|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1
mm9_v1_chr12_+_70298163_70298251	0.748114	NHLH1,2.p2	AK161156|9330151L19Rik|414085|RIKEN cDNA 9330151L19 gene	AK154174|9330151L19Rik|414085|RIKEN cDNA 9330151L19 gene	AK034052|9330151L19Rik|414085|RIKEN cDNA 9330151L19 gene
mm9_v1_chr19_-_21547072_21547150	0.747733	NHLH1,2.p2	AF174583|Gda|14544|guanine deaminase	AK044078|Gda|14544|guanine deaminase	AK173138|Gda|14544|guanine deaminase	AK041056|Gda|14544|guanine deaminase	AK079459|Gda|14544|guanine deaminase	AK157014|Gda|14544|guanine deaminase	NM_010266|Gda|14544|guanine deaminase
mm9_v1_chr11_-_100644485_100644492	0.744959	NHLH1,2.p2	AK004071|Stat5b|20851|signal transducer and activator of transcription 5B
mm9_v1_chr7_-_133939596_133939677	0.744779	NHLH1,2.p2	
mm9_v1_chr10_+_23943322_23943408	0.743697	NHLH1,2.p2	AK014340|Moxd1|59012|monooxygenase, DBH-like 1	NM_021509|Moxd1|59012|monooxygenase, DBH-like 1	AK081586|Moxd1|59012|monooxygenase, DBH-like 1	AK030274|Moxd1|59012|monooxygenase, DBH-like 1	AK162030|Moxd1|59012|monooxygenase, DBH-like 1	AB041606|Moxd1|59012|monooxygenase, DBH-like 1	BC037684|Moxd1|59012|monooxygenase, DBH-like 1	BC057652|Moxd1|59012|monooxygenase, DBH-like 1
mm9_v1_chr14_-_32249250_32249295	0.74327	NHLH1,2.p2	AK165033|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)	BC018237|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)	AK043375|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)
mm9_v1_chr10_-_76188683_76188791	0.743141	NHLH1,2.p2	AK052924|Col6a1|12833|collagen, type VI, alpha 1	NM_009933|Col6a1|12833|collagen, type VI, alpha 1	X66405|Col6a1|12833|collagen, type VI, alpha 1
mm9_v1_chr9_+_95459990_95460369	0.742736	NHLH1,2.p2	AY424298|Paqr9|75552|progestin and adipoQ receptor family member IX	NM_198414|Paqr9|75552|progestin and adipoQ receptor family member IX	AK133021|Paqr9|75552|progestin and adipoQ receptor family member IX
mm9_v1_chrX_-_160396490_160396625	0.742477	NHLH1,2.p2	BC083160|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	BC099617|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	BC065693|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	D45205|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	AK030296|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	AK045504|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	NM_009453|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	NM_178794|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2
mm9_v1_chr3_+_94217197_94217322	0.741623	NHLH1,2.p2	BC057030|Tdrkh|72634|tudor and KH domain containing protein	BC031886|Tdrkh|72634|tudor and KH domain containing protein	BC049363|Tdrkh|72634|tudor and KH domain containing protein	NM_028307|Tdrkh|72634|tudor and KH domain containing protein
mm9_v1_chr5_+_138187303_138187355	0.73997	NHLH1,2.p2	BC023761|Tsc22d4|78829|TSC22 domain family, member 4
mm9_v1_chr2_-_164268672_164268690	0.738782	NHLH1,2.p2	BC005679|Sdc4|20971|syndecan 4	AK134326|Sdc4|20971|syndecan 4	AK153445|Sdc4|20971|syndecan 4	AK145805|Sdc4|20971|syndecan 4	AK159215|Sdc4|20971|syndecan 4	AK164952|Sdc4|20971|syndecan 4	D89571|Sdc4|20971|syndecan 4	NM_011521|Sdc4|20971|syndecan 4
mm9_v1_chr1_+_75139738_75139836	0.736991	NHLH1,2.p2	AK158940|Fam134a|227298|family with sequence similarity 134, member A	AK152268|Fam134a|227298|family with sequence similarity 134, member A
mm9_v1_chr13_+_95746298_95746380	0.736081	NHLH1,2.p2	AK082348|Wdr41|218460|WD repeat domain 41	NM_172590|Wdr41|218460|WD repeat domain 41	AK046853|Wdr41|218460|WD repeat domain 41	AK149993|Wdr41|218460|WD repeat domain 41
mm9_v1_chrX_+_7340029_7340035	0.735578	NHLH1,2.p2	AK150372|Tcfe3|209446|transcription factor E3	AK153051|Tcfe3|209446|transcription factor E3
mm9_v1_chr13_+_30751950_30751985	0.735353	NHLH1,2.p2	BC057944|Dusp22|105352|dual specificity phosphatase 22	AK148708|Dusp22|105352|dual specificity phosphatase 22	AF237619|Dusp22|105352|dual specificity phosphatase 22	NM_134068|Dusp22|105352|dual specificity phosphatase 22	AK149363|Dusp22|105352|dual specificity phosphatase 22	NM_001037955|Dusp22|105352|dual specificity phosphatase 22	BC080718|Dusp22|105352|dual specificity phosphatase 22	BC108362|Dusp22|105352|dual specificity phosphatase 22
mm9_v1_chr4_+_106584314_106584344	0.735242	NHLH1,2.p2	BC003430|Ssbp3|72475|single-stranded DNA binding protein 3	AF500117|Ssbp3|72475|single-stranded DNA binding protein 3
mm9_v1_chr15_+_101974616_101974616	0.73303	NHLH1,2.p2	NM_008344|Igfbp6|16012|insulin-like growth factor binding protein 6
mm9_v1_chr16_-_45158709_45158787	0.730574	NHLH1,2.p2	AK030566|Slc35a5|74102|solute carrier family 35, member A5	AK003124|Slc35a5|74102|solute carrier family 35, member A5	AK052833|Slc35a5|74102|solute carrier family 35, member A5	BC011115|Slc35a5|74102|solute carrier family 35, member A5	AK085567|Slc35a5|74102|solute carrier family 35, member A5	AK033921|Slc35a5|74102|solute carrier family 35, member A5	AK170026|Slc35a5|74102|solute carrier family 35, member A5	AK034527|Slc35a5|74102|solute carrier family 35, member A5	AK150825|Slc35a5|74102|solute carrier family 35, member A5	AK151484|Slc35a5|74102|solute carrier family 35, member A5	NM_028756|Slc35a5|74102|solute carrier family 35, member A5
mm9_v1_chr12_+_54349663_54349663	0.729983	NHLH1,2.p2	AF173871|Npas3|27386|neuronal PAS domain protein 3	BC120885|Npas3|27386|neuronal PAS domain protein 3	BC148199|Npas3|27386|neuronal PAS domain protein 3	NM_013780|Npas3|27386|neuronal PAS domain protein 3
mm9_v1_chr3_+_95428905_95429041	0.728154	NHLH1,2.p2	AK006149|Ensa|56205|endosulfine alpha	AK149726|Ensa|56205|endosulfine alpha	AK161290|Ensa|56205|endosulfine alpha	BC059724|Ensa|56205|endosulfine alpha	BC020533|Ensa|56205|endosulfine alpha	BC058802|Ensa|56205|endosulfine alpha	AJ005985|Ensa|56205|endosulfine alpha
mm9_v1_chr11_-_84729844_84729889	0.728007	NHLH1,2.p2	BC089554|Znhit3|448850|zinc finger, HIT type 3	AK002888|Znhit3|448850|zinc finger, HIT type 3	AK003721|Znhit3|448850|zinc finger, HIT type 3	AK004259|Znhit3|448850|zinc finger, HIT type 3	NM_001005223|Znhit3|448850|zinc finger, HIT type 3	AK014350|Znhit3|448850|zinc finger, HIT type 3
mm9_v1_chr2_+_31325818_31325829	0.727614	NHLH1,2.p2	AK149489|Ass1|11898|argininosuccinate synthetase 1	AK146635|Ass1|11898|argininosuccinate synthetase 1
mm9_v1_chr7_-_107520411_107520510	0.725744	NHLH1,2.p2	AK146268|Ppme1|72590|protein phosphatase methylesterase 1	AK028261|Ppme1|72590|protein phosphatase methylesterase 1	AK012256|Ppme1|72590|protein phosphatase methylesterase 1	AK154876|Ppme1|72590|protein phosphatase methylesterase 1
mm9_v1_chr15_-_74672048_74672072	0.725709	NHLH1,2.p2	AK142439|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	AK163083|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	AK168839|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	BC139248|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	BC139250|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	NM_001033229|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1
mm9_v1_chr4_-_134989653_134989790	0.723898	NHLH1,2.p2	AK042201|Rcan3|53902|regulator of calcineurin 3	AK155270|Rcan3|53902|regulator of calcineurin 3	NM_022980|Rcan3|53902|regulator of calcineurin 3	AK043916|Rcan3|53902|regulator of calcineurin 3
mm9_v1_chr9_-_114842953_114842992	0.723174	NHLH1,2.p2	AK166662|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	BC037729|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	AK145475|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr14_+_122277821_122277919	0.721915	NHLH1,2.p2	NM_026861|Ubac2|68889|ubiquitin associated domain containing 2	BC024467|Ubac2|68889|ubiquitin associated domain containing 2	AK049109|Ubac2|68889|ubiquitin associated domain containing 2	AK158177|Ubac2|68889|ubiquitin associated domain containing 2
mm9_v1_chr19_-_44624857_44624862	0.721112	NHLH1,2.p2	
mm9_v1_chr18_-_33623069_33623089	0.720625	NHLH1,2.p2	BC054762|D0H4S114|27528|DNA segment, human D4S114	NM_001109990|D0H4S114|27528|DNA segment, human D4S114	X70398|D0H4S114|27528|DNA segment, human D4S114	AK048361|D0H4S114|27528|DNA segment, human D4S114	AK081502|D0H4S114|27528|DNA segment, human D4S114	AK133769|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr8_+_63369202_63369282	0.720497	NHLH1,2.p2	AK151754|2700029M09Rik|72612|RIKEN cDNA 2700029M09 gene	BC042740|2700029M09Rik|72612|RIKEN cDNA 2700029M09 gene	NM_028299|2700029M09Rik|72612|RIKEN cDNA 2700029M09 gene	AK150453|2700029M09Rik|72612|RIKEN cDNA 2700029M09 gene	AK157260|2700029M09Rik|72612|RIKEN cDNA 2700029M09 gene	AK012304|2700029M09Rik|72612|RIKEN cDNA 2700029M09 gene
mm9_v1_chr15_+_81065928_81066000	0.719924	NHLH1,2.p2	NM_145132|Mchr1|207911|melanin-concentrating hormone receptor 1
mm9_v1_chr2_+_70499545_70499765	0.719857	NHLH1,2.p2	NM_027352|Gorasp2|70231|golgi reassembly stacking protein 2	AK033413|Gorasp2|70231|golgi reassembly stacking protein 2	AK077683|Gorasp2|70231|golgi reassembly stacking protein 2	AK148337|Gorasp2|70231|golgi reassembly stacking protein 2	AK153555|Gorasp2|70231|golgi reassembly stacking protein 2	AK167823|Gorasp2|70231|golgi reassembly stacking protein 2	AK168928|Gorasp2|70231|golgi reassembly stacking protein 2	AK159469|Gorasp2|70231|golgi reassembly stacking protein 2	AK010664|Gorasp2|70231|golgi reassembly stacking protein 2	AK152603|Gorasp2|70231|golgi reassembly stacking protein 2	BC024982|Gorasp2|70231|golgi reassembly stacking protein 2	AK002515|Gorasp2|70231|golgi reassembly stacking protein 2	AK044691|Gorasp2|70231|golgi reassembly stacking protein 2	AK088239|Gorasp2|70231|golgi reassembly stacking protein 2	AK151843|Gorasp2|70231|golgi reassembly stacking protein 2	AK152475|Gorasp2|70231|golgi reassembly stacking protein 2	AK152544|Gorasp2|70231|golgi reassembly stacking protein 2	AK153049|Gorasp2|70231|golgi reassembly stacking protein 2	AK169382|Gorasp2|70231|golgi reassembly stacking protein 2	AK077153|Gorasp2|70231|golgi reassembly stacking protein 2	BC005600|Gorasp2|70231|golgi reassembly stacking protein 2	AK077706|Gorasp2|70231|golgi reassembly stacking protein 2
mm9_v1_chr1_-_163181251_163181302	0.719744	NHLH1,2.p2	BC013489|Prdx6|11758|peroxiredoxin 6	AK172888|Prdx6|11758|peroxiredoxin 6	AF004670|Prdx6|11758|peroxiredoxin 6	AK168223|Prdx6|11758|peroxiredoxin 6	AK076191|Prdx6|11758|peroxiredoxin 6	AK035097|Prdx6|11758|peroxiredoxin 6	AK081980|Prdx6|11758|peroxiredoxin 6	AF093852|Prdx6|11758|peroxiredoxin 6	AK030413|Prdx6|11758|peroxiredoxin 6	AK161710|Prdx6|11758|peroxiredoxin 6	BC061181|Prdx6|11758|peroxiredoxin 6	NM_007453|Prdx6|11758|peroxiredoxin 6
mm9_v1_chr18_-_34811357_34811396	0.718837	NHLH1,2.p2	BC059013|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK031459|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK038523|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK047789|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK048246|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK079681|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK044478|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK052567|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK075948|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK081461|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	NM_178347|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)
mm9_v1_chr10_-_80039973_80040065	0.718315	NHLH1,2.p2	BC137607|Klf16|118445|Kruppel-like factor 16	BC137609|Klf16|118445|Kruppel-like factor 16	AF283891|Klf16|118445|Kruppel-like factor 16	AK044577|Klf16|118445|Kruppel-like factor 16	NM_078477|Klf16|118445|Kruppel-like factor 16	AK154524|Klf16|118445|Kruppel-like factor 16
mm9_v1_chr19_-_7351647_7351726	0.716365	NHLH1,2.p2	AK194221|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	AK218760|Mark2|13728|MAP/microtubule affinity-regulating kinase 2
mm9_v1_chr11_-_97521633_97521716	0.715083	NHLH1,2.p2	AK052674|LOC432596|432596|similar to Als2 protein
mm9_v1_chr7_+_104480819_104480860	0.714182	NHLH1,2.p2	NM_001039039|Kctd21|622320|potassium channel tetramerisation domain containing 21	AK141547|Kctd21|622320|potassium channel tetramerisation domain containing 21
mm9_v1_chr11_-_118074052_118074068	0.714118	NHLH1,2.p2	AK158216|Cyth1|19157|cytohesin 1	NM_001112700|Cyth1|19157|cytohesin 1
mm9_v1_chr17_-_25031989_25032041	0.713865	NHLH1,2.p2	BC092228|Eme2|193838|essential meiotic endonuclease 1 homolog 2 (S. pombe)	AK012738|Eme2|193838|essential meiotic endonuclease 1 homolog 2 (S. pombe)	NM_001163102|Eme2|193838|essential meiotic endonuclease 1 homolog 2 (S. pombe)
mm9_v1_chr5_+_110605872_110605990	0.713421	NHLH1,2.p2	AK171773|Golga3|269682|golgi autoantigen, golgin subfamily a, 3	AK133623|Golga3|269682|golgi autoantigen, golgin subfamily a, 3	D78270|Golga3|269682|golgi autoantigen, golgin subfamily a, 3
mm9_v1_chr15_+_99532787_99532913	0.711909	NHLH1,2.p2	BC026783|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr3_+_33699111_33699116	0.711661	NHLH1,2.p2	AK031605|Ttc14|67120|tetratricopeptide repeat domain 14	AK134539|Ttc14|67120|tetratricopeptide repeat domain 14	NM_025978|Ttc14|67120|tetratricopeptide repeat domain 14	NM_027619|Ttc14|67120|tetratricopeptide repeat domain 14
mm9_v1_chr15_+_92227240_92227311	0.711387	NHLH1,2.p2	NM_001164593|Pdzrn4|239618|PDZ domain containing RING finger 4	BC151034|Pdzrn4|239618|PDZ domain containing RING finger 4
mm9_v1_chr12_-_100139666_100139693	0.708816	NHLH1,2.p2	AK081694|Eml5|319670|echinoderm microtubule associated protein like 5	NM_001081191|Eml5|319670|echinoderm microtubule associated protein like 5
mm9_v1_chr10_+_79132224_79132234	0.708644	NHLH1,2.p2	AK153467|Gm16517|110012|predicted gene, Gm16517
mm9_v1_chr5_+_53225253_53225293	0.708131	NHLH1,2.p2	AK166061|Anapc4|52206|anaphase promoting complex subunit 4
mm9_v1_chr19_-_4163244_4163282	0.708031	NHLH1,2.p2	AJ007938|Rps6kb2|58988|ribosomal protein S6 kinase, polypeptide 2	NM_021485|Rps6kb2|58988|ribosomal protein S6 kinase, polypeptide 2	BC005694|Rps6kb2|58988|ribosomal protein S6 kinase, polypeptide 2
mm9_v1_chr11_+_75007300_75007314	0.70786	NHLH1,2.p2	BC030471|Rtn4rl1|237847|reticulon 4 receptor-like 1
mm9_v1_chr16_+_8470854_8470905	0.70737	NHLH1,2.p2	AK136614|BC024814|239706|cDNA sequence BC024814	AK089212|BC024814|239706|cDNA sequence BC024814	BC024814|BC024814|239706|cDNA sequence BC024814	NM_146247|BC024814|239706|cDNA sequence BC024814
mm9_v1_chr12_+_112692786_112692860	0.707177	NHLH1,2.p2	
mm9_v1_chr8_+_114061310_114061413	0.707141	NHLH1,2.p2	AK078819|Znrf1|170737|zinc and ring finger 1	AK076756|Znrf1|170737|zinc and ring finger 1	AK216619|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr8_-_128093602_128093782	0.706959	NHLH1,2.p2	AK132916|Sipa1l2|244668|signal-induced proliferation-associated 1 like 2	BC072593|Sipa1l2|244668|signal-induced proliferation-associated 1 like 2
mm9_v1_chr2_-_127346987_127347085	0.706125	NHLH1,2.p2	AF274050|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	DQ148499|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF300870|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC057329|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC026980|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC047139|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AK165711|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF184624|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr14_+_73952438_73952612	0.706114	NHLH1,2.p2	AK016060|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK081965|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK088801|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK150594|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK152783|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK160130|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	NM_011506|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK153198|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	BC056353|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	BC057605|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK132762|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK160652|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK005273|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit
mm9_v1_chr4_+_43394824_43394863	0.705824	NHLH1,2.p2	NM_001037709|Rusc2|100213|RUN and SH3 domain containing 2
mm9_v1_chr5_-_133019167_133019269	0.705776	NHLH1,2.p2	AK147478|Auts2|319974|autism susceptibility candidate 2
mm9_v1_chr17_-_29484429_29484756	0.70228	NHLH1,2.p2	AK193036|Mtch1|56462|mitochondrial carrier homolog 1 (C. elegans)	AK217430|Mtch1|56462|mitochondrial carrier homolog 1 (C. elegans)	BC023135|Mtch1|56462|mitochondrial carrier homolog 1 (C. elegans)	BC027274|Mtch1|56462|mitochondrial carrier homolog 1 (C. elegans)	AK154010|Mtch1|56462|mitochondrial carrier homolog 1 (C. elegans)	AK009623|Mtch1|56462|mitochondrial carrier homolog 1 (C. elegans)
mm9_v1_chr8_-_73034208_73034318	0.702102	NHLH1,2.p2	BC054413|Uba52|22186|ubiquitin A-52 residue ribosomal protein fusion product 1	BC014772|Uba52|22186|ubiquitin A-52 residue ribosomal protein fusion product 1	AK018726|Uba52|22186|ubiquitin A-52 residue ribosomal protein fusion product 1	BC086924|Uba52|22186|ubiquitin A-52 residue ribosomal protein fusion product 1	BC087922|Uba52|22186|ubiquitin A-52 residue ribosomal protein fusion product 1	NM_019883|Uba52|22186|ubiquitin A-52 residue ribosomal protein fusion product 1
mm9_v1_chr2_-_30329737_30329744	0.70154	NHLH1,2.p2	AK034055|Ier5l|72500|immediate early response 5-like
mm9_v1_chr3_-_107698658_107698731	0.700035	NHLH1,2.p2	AK147824|4933431E20Rik|329735|RIKEN cDNA 4933431E20 gene	AK030251|4933431E20Rik|329735|RIKEN cDNA 4933431E20 gene	AK043835|4933431E20Rik|329735|RIKEN cDNA 4933431E20 gene	AK036227|4933431E20Rik|329735|RIKEN cDNA 4933431E20 gene
mm9_v1_chr4_+_46151361_46151511	0.699904	NHLH1,2.p2	AK169557|Ncbp1|433702|nuclear cap binding protein subunit 1	NM_001033201|Ncbp1|433702|nuclear cap binding protein subunit 1	AK134334|Ncbp1|433702|nuclear cap binding protein subunit 1	AK133991|Ncbp1|433702|nuclear cap binding protein subunit 1	BC138898|Ncbp1|433702|nuclear cap binding protein subunit 1
mm9_v1_chrX_-_20194385_20194425	0.699563	NHLH1,2.p2	AK028121|Ndufb11|104130|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11
mm9_v1_chr10_-_77707321_77707347	0.699462	NHLH1,2.p2	AK154290|Trappc10|216131|trafficking protein particle complex 10
mm9_v1_chr5_+_147196560_147196581	0.698894	NHLH1,2.p2	AK044481|Wasf3|245880|WAS protein family, member 3	BC027038|Wasf3|245880|WAS protein family, member 3	NM_145155|Wasf3|245880|WAS protein family, member 3
mm9_v1_chr1_+_137662648_137662798	0.698002	NHLH1,2.p2	NM_013750|Phlda3|27280|pleckstrin homology-like domain, family A, member 3	AK003767|Phlda3|27280|pleckstrin homology-like domain, family A, member 3	BC023376|Phlda3|27280|pleckstrin homology-like domain, family A, member 3	BC023408|Phlda3|27280|pleckstrin homology-like domain, family A, member 3
mm9_v1_chr8_-_109580546_109580561	0.697128	NHLH1,2.p2	AB041610|Cog8|97484|component of oligomeric golgi complex 8
mm9_v1_chr16_-_3884504_3884577	0.695542	NHLH1,2.p2	AK172006|Zfp597|71063|zinc finger protein 597
mm9_v1_chr11_+_117675276_117675380	0.695384	NHLH1,2.p2	AK180145|Syngr2|20973|synaptogyrin 2
mm9_v1_chr4_-_131394135_131394216	0.695244	NHLH1,2.p2	BC080736|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	BC048694|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	AK052720|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	D88187|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	AK148515|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	NM_001083119|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	NM_011214|Ptpru|19273|protein tyrosine phosphatase, receptor type, U
mm9_v1_chr1_+_157005804_157006022	0.694688	NHLH1,2.p2	NM_021433|Stx6|58244|syntaxin 6	AK018167|Stx6|58244|syntaxin 6	AK031673|Stx6|58244|syntaxin 6	AK159392|Stx6|58244|syntaxin 6	AK019106|Stx6|58244|syntaxin 6	AK044905|Stx6|58244|syntaxin 6	AK049124|Stx6|58244|syntaxin 6	AK009690|Stx6|58244|syntaxin 6	AK151549|Stx6|58244|syntaxin 6	BC029205|Stx6|58244|syntaxin 6	AF237814|Stx6|58244|syntaxin 6
mm9_v1_chr17_+_6270474_6270474	0.693804	NHLH1,2.p2	AK154554|Tmem181a|77106|transmembrane protein 181A	NM_001033178|Tmem181a|77106|transmembrane protein 181A
mm9_v1_chr12_+_56937357_56937396	0.693644	NHLH1,2.p2	BC034885|Brms1l|52592|breast cancer metastasis-suppressor 1-like
mm9_v1_chr15_-_82184631_82184726	0.691849	NHLH1,2.p2	AK002749|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	AK010988|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	AK012328|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	BC048451|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	NM_025987|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)
mm9_v1_chr5_-_136646451_136646559	0.691699	NHLH1,2.p2	BC115648|Orai2|269717|ORAI calcium release-activated calcium modulator 2	BC115649|Orai2|269717|ORAI calcium release-activated calcium modulator 2	AK195764|Orai2|269717|ORAI calcium release-activated calcium modulator 2	AK215306|Orai2|269717|ORAI calcium release-activated calcium modulator 2	AK079619|Orai2|269717|ORAI calcium release-activated calcium modulator 2	BC066070|Orai2|269717|ORAI calcium release-activated calcium modulator 2	AK087038|Orai2|269717|ORAI calcium release-activated calcium modulator 2	AK036013|Orai2|269717|ORAI calcium release-activated calcium modulator 2	AK042940|Orai2|269717|ORAI calcium release-activated calcium modulator 2	NM_178751|Orai2|269717|ORAI calcium release-activated calcium modulator 2
mm9_v1_chr4_+_106851234_106851330	0.690516	NHLH1,2.p2	NM_029565|Tmem59|56374|transmembrane protein 59	AF116911|Tmem59|56374|transmembrane protein 59	BC045145|Tmem59|56374|transmembrane protein 59	AX775905|Tmem59|56374|transmembrane protein 59	AK159761|Tmem59|56374|transmembrane protein 59	BC018379|Tmem59|56374|transmembrane protein 59	AK145644|Tmem59|56374|transmembrane protein 59	AK050162|Tmem59|56374|transmembrane protein 59	BC058273|Tmem59|56374|transmembrane protein 59	AK003252|Tmem59|56374|transmembrane protein 59	AK166772|Tmem59|56374|transmembrane protein 59	AK167058|Tmem59|56374|transmembrane protein 59	BC014732|Tmem59|56374|transmembrane protein 59
mm9_v1_chr11_-_96688959_96689060	0.690314	NHLH1,2.p2	BC047283|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	AF071084|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	X78709|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr7_-_35597470_35597729	0.690087	NHLH1,2.p2	AK005217|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	AF308145|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	BC051124|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	AK038952|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	AK051290|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	NM_175140|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8
mm9_v1_chr1_+_75378688_75378710	0.688595	NHLH1,2.p2	NM_001085371|Speg|11790|SPEG complex locus	AK164360|Speg|11790|SPEG complex locus
mm9_v1_chr11_-_69648350_69648356	0.687963	NHLH1,2.p2	AK173159|Nlgn2|216856|neuroligin 2	NM_198862|Nlgn2|216856|neuroligin 2
mm9_v1_chrX_-_99839480_99839617	0.687112	NHLH1,2.p2	X74616|Phka1|18679|phosphorylase kinase alpha 1	AK137497|Phka1|18679|phosphorylase kinase alpha 1	AK036440|Phka1|18679|phosphorylase kinase alpha 1	AK030426|Phka1|18679|phosphorylase kinase alpha 1	NM_008832|Phka1|18679|phosphorylase kinase alpha 1	NM_173021|Phka1|18679|phosphorylase kinase alpha 1
mm9_v1_chr10_+_80085486_80085637	0.686575	NHLH1,2.p2	AK152413|Csnk1g2|103236|casein kinase 1, gamma 2	NM_134002|Csnk1g2|103236|casein kinase 1, gamma 2	BC004839|Csnk1g2|103236|casein kinase 1, gamma 2	BC035440|Csnk1g2|103236|casein kinase 1, gamma 2
mm9_v1_chr1_-_196957466_196957592	0.686049	NHLH1,2.p2	M23446|Cr1l|12946|complement component (3b/4b) receptor 1-like	BC092048|Cr1l|12946|complement component (3b/4b) receptor 1-like	BC028945|Cr1l|12946|complement component (3b/4b) receptor 1-like	AK134226|Cr1l|12946|complement component (3b/4b) receptor 1-like
mm9_v1_chr9_-_53514219_53514352	0.685591	NHLH1,2.p2	AB232635|Rab39|270160|RAB39, member RAS oncogene family	BC049787|Rab39|270160|RAB39, member RAS oncogene family	AK053487|Rab39|270160|RAB39, member RAS oncogene family	AK049038|Rab39|270160|RAB39, member RAS oncogene family	NM_175562|Rab39|270160|RAB39, member RAS oncogene family
mm9_v1_chr10_-_75807976_75808035	0.6849	NHLH1,2.p2	AK052899|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)	NM_001081419|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)	AK050040|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)
mm9_v1_chr5_+_138187390_138187596	0.68403	NHLH1,2.p2	AK143608|Tsc22d4|78829|TSC22 domain family, member 4	AK079510|Tsc22d4|78829|TSC22 domain family, member 4	AF201286|Tsc22d4|78829|TSC22 domain family, member 4	AK201891|Tsc22d4|78829|TSC22 domain family, member 4	AK154490|Tsc22d4|78829|TSC22 domain family, member 4
mm9_v1_chr7_+_134388053_134388144	0.683984	NHLH1,2.p2	BC139048|Zfp771|244216|zinc finger protein 771	BC139049|Zfp771|244216|zinc finger protein 771	BC145524|Zfp771|244216|zinc finger protein 771
mm9_v1_chr15_+_101054589_101054674	0.683418	NHLH1,2.p2	NM_019518|Grasp|56149|GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	AB041603|Grasp|56149|GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	BC046307|Grasp|56149|GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	AF236099|Grasp|56149|GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein
mm9_v1_chr6_+_83745142_83745245	0.682458	NHLH1,2.p2	NM_001164187|Nagk|56174|N-acetylglucosamine kinase	AK155292|Nagk|56174|N-acetylglucosamine kinase	BC004689|Nagk|56174|N-acetylglucosamine kinase	AJ242911|Nagk|56174|N-acetylglucosamine kinase
mm9_v1_chr18_+_33098914_33099011	0.681987	NHLH1,2.p2	AK043114|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	X58995|Camk4|12326|calcium/calmodulin-dependent protein kinase IV
mm9_v1_chr9_-_20877907_20878057	0.681891	NHLH1,2.p2	AK010211|Fdx1l|68165|ferredoxin 1-like	AK008401|Fdx1l|68165|ferredoxin 1-like	AK020979|Fdx1l|68165|ferredoxin 1-like	NM_001039824|Fdx1l|68165|ferredoxin 1-like	BC061189|Fdx1l|68165|ferredoxin 1-like	BC172154|Fdx1l|68165|ferredoxin 1-like
mm9_v1_chr12_-_46175310_46175359	0.680389	NHLH1,2.p2	BC024598|Stxbp6|217517|syntaxin binding protein 6 (amisyn)
mm9_v1_chr9_+_14305055_14305063	0.680378	NHLH1,2.p2	NM_023153|Cwc15|66070|CWC15 homolog (S. cerevisiae)
mm9_v1_chr8_+_113557991_113558130	0.680336	NHLH1,2.p2	AK044451|Aars|234734|alanyl-tRNA synthetase
mm9_v1_chr10_-_75261240_75261328	0.679832	NHLH1,2.p2	X98055|Gstt1|14871|glutathione S-transferase, theta 1	BC012254|Gstt1|14871|glutathione S-transferase, theta 1	BC055020|Gstt1|14871|glutathione S-transferase, theta 1	AK002338|Gstt1|14871|glutathione S-transferase, theta 1	NM_008185|Gstt1|14871|glutathione S-transferase, theta 1
mm9_v1_chr9_+_121619562_121619584	0.679712	NHLH1,2.p2	AK078209|Deb1|26901|differentially expressed in B16F10 1	AK085962|Deb1|26901|differentially expressed in B16F10 1
mm9_v1_chr15_-_76180500_76180651	0.67945	NHLH1,2.p2	AK178398|Sharpin|106025|SHANK-associated RH domain interacting protein
mm9_v1_chr5_+_138187182_138187260	0.678941	NHLH1,2.p2	AK080828|Tsc22d4|78829|TSC22 domain family, member 4	AK155712|Tsc22d4|78829|TSC22 domain family, member 4	AK170487|Tsc22d4|78829|TSC22 domain family, member 4	AK018735|Tsc22d4|78829|TSC22 domain family, member 4	NM_023910|Tsc22d4|78829|TSC22 domain family, member 4	AK150043|Tsc22d4|78829|TSC22 domain family, member 4	BC145721|Tsc22d4|78829|TSC22 domain family, member 4	BC145723|Tsc22d4|78829|TSC22 domain family, member 4	AK039535|Tsc22d4|78829|TSC22 domain family, member 4	AK154153|Tsc22d4|78829|TSC22 domain family, member 4	AK040534|Tsc22d4|78829|TSC22 domain family, member 4
mm9_v1_chr19_-_4163292_4163339	0.678824	NHLH1,2.p2	AK090093|Rps6kb2|58988|ribosomal protein S6 kinase, polypeptide 2	AK156361|Rps6kb2|58988|ribosomal protein S6 kinase, polypeptide 2	BC051631|Rps6kb2|58988|ribosomal protein S6 kinase, polypeptide 2	BC066842|Rps6kb2|58988|ribosomal protein S6 kinase, polypeptide 2	AK014412|Rps6kb2|58988|ribosomal protein S6 kinase, polypeptide 2
mm9_v1_chr7_+_30880094_30880209	0.677115	NHLH1,2.p2	BC085180|Zfp260|26466|zinc finger protein 260	NM_011981|Zfp260|26466|zinc finger protein 260	AK156219|Zfp260|26466|zinc finger protein 260
mm9_v1_chr1_+_173155184_173155238	0.6758	NHLH1,2.p2	NM_013474|Apoa2|11807|apolipoprotein A-II	M79361|Apoa2|11807|apolipoprotein A-II	M79362|Apoa2|11807|apolipoprotein A-II	AK145823|Apoa2|11807|apolipoprotein A-II	X62772|Apoa2|11807|apolipoprotein A-II	BC031786|Apoa2|11807|apolipoprotein A-II
mm9_v1_chr5_+_21049296_21049344	0.674915	NHLH1,2.p2	NM_028977|Lrrc17|74511|leucine rich repeat containing 17
mm9_v1_chr14_-_119322244_119322388	0.674697	NHLH1,2.p2	AK129256|Dzip1|66573|DAZ interacting protein 1	NM_025943|Dzip1|66573|DAZ interacting protein 1
mm9_v1_chr14_-_70842971_70843070	0.674664	NHLH1,2.p2	NM_001164082|Polr3d|67065|polymerase (RNA) III (DNA directed) polypeptide D
mm9_v1_chr11_+_70353975_70353982	0.674132	NHLH1,2.p2	U87557|Pld2|18806|phospholipase D2
mm9_v1_chr15_+_81066029_81066052	0.672466	NHLH1,2.p2	AK134867|Mchr1|207911|melanin-concentrating hormone receptor 1
mm9_v1_chr9_-_114842996_114843065	0.671666	NHLH1,2.p2	AK050572|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	AK172886|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr11_+_98656807_98656873	0.670445	NHLH1,2.p2	AK014463|Msl1|74026|male-specific lethal 1 homolog (Drosophila)
mm9_v1_chr18_-_62071451_62071482	0.669442	NHLH1,2.p2	BC094229|Ablim3|319713|actin binding LIM protein family, member 3	AK082380|Ablim3|319713|actin binding LIM protein family, member 3	BC060275|Ablim3|319713|actin binding LIM protein family, member 3	NM_198649|Ablim3|319713|actin binding LIM protein family, member 3
mm9_v1_chr4_-_155243505_155243560	0.668963	NHLH1,2.p2	AK089229|Gltpd1|79554|glycolipid transfer protein domain containing 1	AK040664|Gltpd1|79554|glycolipid transfer protein domain containing 1	NM_024472|Gltpd1|79554|glycolipid transfer protein domain containing 1
mm9_v1_chr8_-_123158281_123158309	0.666985	NHLH1,2.p2	BC027666|1190005I06Rik|68918|RIKEN cDNA 1190005I06 gene	NM_197988|1190005I06Rik|68918|RIKEN cDNA 1190005I06 gene
mm9_v1_chr12_+_114424066_114424140	0.666911	NHLH1,2.p2	NM_153776|Tmem121|69195|transmembrane protein 121	AK010454|Tmem121|69195|transmembrane protein 121	AF488729|Tmem121|69195|transmembrane protein 121
mm9_v1_chr5_+_136254474_136254576	0.666831	NHLH1,2.p2	AK002305|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)	AK135162|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)	BC023482|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)	NM_008617|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)	AK160553|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)	AK167809|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)	M16229|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)
mm9_v1_chr17_+_27822162_27822200	0.666297	NHLH1,2.p2	AK043967|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1	NM_178365|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1
mm9_v1_chr8_+_87493507_87493627	0.66624	NHLH1,2.p2	AK005225|Prdx2|21672|peroxiredoxin 2	AK088280|Prdx2|21672|peroxiredoxin 2	AK008433|Prdx2|21672|peroxiredoxin 2	NM_011563|Prdx2|21672|peroxiredoxin 2	BC002034|Prdx2|21672|peroxiredoxin 2	AK010653|Prdx2|21672|peroxiredoxin 2	X82067|Prdx2|21672|peroxiredoxin 2	AK011963|Prdx2|21672|peroxiredoxin 2	U20611|Prdx2|21672|peroxiredoxin 2	U51679|Prdx2|21672|peroxiredoxin 2	BC081454|Prdx2|21672|peroxiredoxin 2
mm9_v1_chr15_-_79664645_79664773	0.666002	NHLH1,2.p2	BC011199|Cbx6|494448|chromobox homolog 6	BC048240|Cbx6|494448|chromobox homolog 6	AK004679|Cbx6|494448|chromobox homolog 6	AK090253|Cbx6|494448|chromobox homolog 6	AK146048|Cbx6|494448|chromobox homolog 6	AK146103|Cbx6|494448|chromobox homolog 6	AY394488|Npcd|504193|neuronal pentraxin chromo domain	AY394489|Npcd|504193|neuronal pentraxin chromo domain	AY395907|Npcd|504193|neuronal pentraxin chromo domain	AK035250|Cbx6|494448|chromobox homolog 6	NM_001013360|Npcd|504193|neuronal pentraxin chromo domain	NM_001013362|Npcd|504193|neuronal pentraxin chromo domain	NM_028763|Cbx6|494448|chromobox homolog 6
mm9_v1_chr15_-_100325669_100325697	0.665751	NHLH1,2.p2	BC035295|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	NM_153407|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK146924|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK050864|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK166557|Csrnp2|207785|cysteine-serine-rich nuclear protein 2
mm9_v1_chr5_+_144309683_144309799	0.66571	NHLH1,2.p2	BC085297|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AB374429|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene
mm9_v1_chr16_+_17146981_17147071	0.665558	NHLH1,2.p2	AK032396|Ydjc|69101|YdjC homolog (bacterial)	AK140044|Ydjc|69101|YdjC homolog (bacterial)	BC030425|Ydjc|69101|YdjC homolog (bacterial)	AK007503|Ydjc|69101|YdjC homolog (bacterial)	BC115584|Ydjc|69101|YdjC homolog (bacterial)	BC115585|Ydjc|69101|YdjC homolog (bacterial)	NM_026940|Ydjc|69101|YdjC homolog (bacterial)
mm9_v1_chr6_-_37249957_37249977	0.663937	NHLH1,2.p2	AK081360|Dgki|320127|diacylglycerol kinase, iota	NM_001081206|Dgki|320127|diacylglycerol kinase, iota
mm9_v1_chr17_-_88464582_88464624	0.663571	NHLH1,2.p2	BC117884|Fbxo11|225055|F-box protein 11	BC117885|Fbxo11|225055|F-box protein 11	BC128479|Fbxo11|225055|F-box protein 11	NM_001081034|Fbxo11|225055|F-box protein 11
mm9_v1_chr12_-_99497634_99497668	0.663018	NHLH1,2.p2	AK154760|Galc|14420|galactosylceramidase
mm9_v1_chr6_-_118147338_118147409	0.662412	NHLH1,2.p2	AK051633|Ret|19713|ret proto-oncogene	AK044686|Ret|19713|ret proto-oncogene	AK084977|Ret|19713|ret proto-oncogene
mm9_v1_chr7_+_88358458_88358518	0.662117	NHLH1,2.p2	AK148238|Pde8a|18584|phosphodiesterase 8A	AK149561|Pde8a|18584|phosphodiesterase 8A
mm9_v1_chr1_-_134287712_134287857	0.66209	NHLH1,2.p2	AK172957|Tmcc2|68875|transmembrane and coiled-coil domains 2	BC052035|Tmcc2|68875|transmembrane and coiled-coil domains 2	NM_178874|Tmcc2|68875|transmembrane and coiled-coil domains 2
mm9_v1_chr5_-_109058760_109058761	0.661664	NHLH1,2.p2	AK159767|Gak|231580|cyclin G associated kinase
mm9_v1_chr4_-_40226373_40226477	0.658899	NHLH1,2.p2	BC147062|Ndufb6|230075|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	BC147063|Ndufb6|230075|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	AK146762|Ndufb6|230075|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	NM_001033305|Ndufb6|230075|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6
mm9_v1_chr8_+_128193717_128193790	0.658848	NHLH1,2.p2	NM_028908|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene	AK042358|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene	AK016632|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene	AK080043|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene	AK220388|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene
mm9_v1_chr7_-_150785913_150785996	0.657854	NHLH1,2.p2	BC054717|Cars|27267|cysteinyl-tRNA synthetase	BC058954|Cars|27267|cysteinyl-tRNA synthetase	NM_013742|Cars|27267|cysteinyl-tRNA synthetase	AJ276796|Cars|27267|cysteinyl-tRNA synthetase	AK033328|Cars|27267|cysteinyl-tRNA synthetase	AK037227|Cars|27267|cysteinyl-tRNA synthetase	AK047027|Cars|27267|cysteinyl-tRNA synthetase	AK077558|Cars|27267|cysteinyl-tRNA synthetase	AK133205|Cars|27267|cysteinyl-tRNA synthetase	AK135433|Cars|27267|cysteinyl-tRNA synthetase	AK152866|Cars|27267|cysteinyl-tRNA synthetase
mm9_v1_chr3_+_107989221_107989318	0.656989	NHLH1,2.p2	AK173118|Amigo1|229715|adhesion molecule with Ig like domain 1	NM_001004293|Amigo1|229715|adhesion molecule with Ig like domain 1	NM_146137|Amigo1|229715|adhesion molecule with Ig like domain 1	BC022907|Amigo1|229715|adhesion molecule with Ig like domain 1	AK035960|Amigo1|229715|adhesion molecule with Ig like domain 1	BC010598|Amigo1|229715|adhesion molecule with Ig like domain 1
mm9_v1_chr13_+_93381086_93381215	0.656749	NHLH1,2.p2	AK165334|Serinc5|218442|serine incorporator 5	BC049189|Serinc5|218442|serine incorporator 5	BC062131|Serinc5|218442|serine incorporator 5	NM_172588|Serinc5|218442|serine incorporator 5	AK037699|Serinc5|218442|serine incorporator 5	AK163675|Serinc5|218442|serine incorporator 5	AB029501|Serinc5|218442|serine incorporator 5
mm9_v1_chr10_+_94151450_94151588	0.656431	NHLH1,2.p2	AK011135|Ccdc41|77048|coiled-coil domain containing 41	BC070464|Ccdc41|77048|coiled-coil domain containing 41	NM_029852|Ccdc41|77048|coiled-coil domain containing 41
mm9_v1_chr9_-_114843103_114843123	0.656383	NHLH1,2.p2	NM_175380|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr7_-_4796261_4796301	0.654766	NHLH1,2.p2	NM_172737|Shisa7|232813|shisa homolog 7 (Xenopus laevis)
mm9_v1_chr16_-_90934985_90935126	0.653542	NHLH1,2.p2	AK003413|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	BC019533|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	AK018510|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	AK045905|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	NM_026502|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene
mm9_v1_chr9_+_69860449_69860495	0.651858	NHLH1,2.p2	AK212444|Gtf2a2|235459|general transcription factor II A, 2
mm9_v1_chrX_-_20194672_20194682	0.651361	NHLH1,2.p2	BC027265|Ndufb11|104130|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11
mm9_v1_chr2_-_127347102_127347108	0.651225	NHLH1,2.p2	AF287732|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF287733|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	NM_019789|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr3_-_138738020_138738033	0.650676	NHLH1,2.p2	BC011279|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1
mm9_v1_chr8_-_123191878_123192011	0.649695	NHLH1,2.p2	AK042704|Cox4nb|18117|COX4 neighbor	AK148190|Cox4nb|18117|COX4 neighbor	BC009103|Cox4nb|18117|COX4 neighbor	AK143131|Cox4nb|18117|COX4 neighbor	AK161438|Cox4nb|18117|COX4 neighbor	AF052621|Cox4nb|18117|COX4 neighbor	AK164130|Cox4nb|18117|COX4 neighbor	NM_010926|Cox4nb|18117|COX4 neighbor
mm9_v1_chr1_+_36748331_36748334	0.649279	NHLH1,2.p2	NM_009942|Cox5b|12859|cytochrome c oxidase, subunit Vb
mm9_v1_chr13_+_37437194_37437308	0.64909	NHLH1,2.p2	AB007599|Ly86|17084|lymphocyte antigen 86	NM_010745|Ly86|17084|lymphocyte antigen 86	AK027929|Ly86|17084|lymphocyte antigen 86	BC096414|Ly86|17084|lymphocyte antigen 86	BC065783|Ly86|17084|lymphocyte antigen 86
mm9_v1_chr4_+_73659506_73659598	0.648532	NHLH1,2.p2	AK079349|Frmd3|242506|FERM domain containing 3	NM_001163732|Frmd3|242506|FERM domain containing 3	NM_172869|Frmd3|242506|FERM domain containing 3	AK034956|Frmd3|242506|FERM domain containing 3	AK048561|Frmd3|242506|FERM domain containing 3	BC118964|Frmd3|242506|FERM domain containing 3	BC112419|Frmd3|242506|FERM domain containing 3	BC113795|Frmd3|242506|FERM domain containing 3
mm9_v1_chr9_+_64233432_64233531	0.648425	NHLH1,2.p2	NM_001134399|Megf11|214058|multiple EGF-like-domains 11	NM_172522|Megf11|214058|multiple EGF-like-domains 11	AK048840|Megf11|214058|multiple EGF-like-domains 11	AK122555|Megf11|214058|multiple EGF-like-domains 11	AK051642|Megf11|214058|multiple EGF-like-domains 11	BC151157|Megf11|214058|multiple EGF-like-domains 11	BC172024|Megf11|214058|multiple EGF-like-domains 11
mm9_v1_chr3_+_88425073_88425232	0.648054	NHLH1,2.p2	BC006589|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AB093254|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr18_+_57628139_57628180	0.646914	NHLH1,2.p2	NM_001134697|Ctxn3|629147|cortexin 3	AK042789|Ctxn3|629147|cortexin 3
mm9_v1_chr16_+_96366980_96367038	0.64677	NHLH1,2.p2	AK084688|Wrb|71446|tryptophan rich basic protein	AK172079|Wrb|71446|tryptophan rich basic protein	BC031769|Wrb|71446|tryptophan rich basic protein	NM_207301|Wrb|71446|tryptophan rich basic protein	AK021091|Wrb|71446|tryptophan rich basic protein
mm9_v1_chr1_+_179375951_179375951	0.646305	NHLH1,2.p2	AF140224|Zfp238|30928|zinc finger protein 238	NM_013915|Zfp238|30928|zinc finger protein 238
mm9_v1_chr9_-_61762220_61762398	0.646219	NHLH1,2.p2	BC013252|Rplp1|56040|ribosomal protein, large, P1	BC092536|Rplp1|56040|ribosomal protein, large, P1	NM_018853|Rplp1|56040|ribosomal protein, large, P1	BC092088|Rplp1|56040|ribosomal protein, large, P1	BC091747|Rplp1|56040|ribosomal protein, large, P1	BC058685|Rplp1|56040|ribosomal protein, large, P1	U29402|Rplp1|56040|ribosomal protein, large, P1	AK007832|Rplp1|56040|ribosomal protein, large, P1	AK088070|Rplp1|56040|ribosomal protein, large, P1	AK169347|Rplp1|56040|ribosomal protein, large, P1	AK010656|Rplp1|56040|ribosomal protein, large, P1
mm9_v1_chr7_-_125591493_125591732	0.646203	NHLH1,2.p2	AK144560|Syt17|110058|synaptotagmin XVII	AK145293|Syt17|110058|synaptotagmin XVII
mm9_v1_chr11_-_62094853_62094905	0.645043	NHLH1,2.p2	BC109343|Zswim7|69747|zinc finger, SWIM-type containing 7	AK010472|Zswim7|69747|zinc finger, SWIM-type containing 7	NM_027198|Zswim7|69747|zinc finger, SWIM-type containing 7
mm9_v1_chr18_-_6241456_6241485	0.64422	NHLH1,2.p2	BC013248|Kif5b|16573|kinesin family member 5B
mm9_v1_chr4_-_71861939_71861956	0.643643	NHLH1,2.p2	NM_011599|Tle1|21885|transducin-like enhancer of split 1, homolog of Drosophila E(spl)
mm9_v1_chr7_-_51745554_51745568	0.642988	NHLH1,2.p2	
mm9_v1_chr19_-_42276620_42276741	0.642159	NHLH1,2.p2	BC032921|Sfrp5|54612|secreted frizzled-related sequence protein 5	AF117759|Sfrp5|54612|secreted frizzled-related sequence protein 5	NM_018780|Sfrp5|54612|secreted frizzled-related sequence protein 5
mm9_v1_chrX_+_71542425_71542435	0.641691	NHLH1,2.p2	NM_018794|Atp6ap1|54411|ATPase, H+ transporting, lysosomal accessory protein 1
mm9_v1_chr6_+_8209296_8209471	0.641283	NHLH1,2.p2	AK158918|Gm16039|100036521|predicted gene 16039	AK009885|Gm16039|100036521|predicted gene 16039
mm9_v1_chr3_-_86724773_86724792	0.64126	NHLH1,2.p2	BC056921|Dclk2|70762|doublecortin-like kinase 2
mm9_v1_chr16_+_35983402_35983472	0.638286	NHLH1,2.p2	AK169464|Kpna1|16646|karyopherin (importin) alpha 1	AK169311|Kpna1|16646|karyopherin (importin) alpha 1	AK169348|Kpna1|16646|karyopherin (importin) alpha 1	AK028307|Kpna1|16646|karyopherin (importin) alpha 1	AK154800|Kpna1|16646|karyopherin (importin) alpha 1	AK028259|Kpna1|16646|karyopherin (importin) alpha 1	NM_008465|Kpna1|16646|karyopherin (importin) alpha 1	U20619|Kpna1|16646|karyopherin (importin) alpha 1	BC006771|Kpna1|16646|karyopherin (importin) alpha 1
mm9_v1_chr16_+_22009607_22009725	0.638267	NHLH1,2.p2	AY188288|Senp2|75826|SUMO/sentrin specific peptidase 2
mm9_v1_chr11_+_59319139_59319178	0.637826	NHLH1,2.p2	AK169756|4933439C10Rik|74476|RIKEN cDNA 4933439C10 gene	AK030920|4933439C10Rik|74476|RIKEN cDNA 4933439C10 gene
mm9_v1_chr9_+_21001148_21001171	0.637769	NHLH1,2.p2	NM_019798|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chr16_-_13903055_13903162	0.63763	NHLH1,2.p2	BC005541|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK165587|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK030613|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK033107|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK163696|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK004611|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1
mm9_v1_chr12_+_109843975_109843976	0.637455	NHLH1,2.p2	AK134563|Evl|14026|Ena-vasodilator stimulated phosphoprotein	NM_001163395|Evl|14026|Ena-vasodilator stimulated phosphoprotein
mm9_v1_chr4_+_97444494_97444517	0.636889	NHLH1,2.p2	AK052204|Nfia|18027|nuclear factor I/A
mm9_v1_chr19_-_29887442_29887463	0.636705	NHLH1,2.p2	BC056759|Ranbp6|240614|RAN binding protein 6	AK044143|Ranbp6|240614|RAN binding protein 6	BC139395|Ranbp6|240614|RAN binding protein 6	BC139396|Ranbp6|240614|RAN binding protein 6	NM_177721|Ranbp6|240614|RAN binding protein 6
mm9_v1_chr9_+_121686724_121687001	0.636116	NHLH1,2.p2	BC125576|Kbtbd5|72330|kelch repeat and BTB (POZ) domain containing 5	BC137889|Kbtbd5|72330|kelch repeat and BTB (POZ) domain containing 5	NM_028202|Kbtbd5|72330|kelch repeat and BTB (POZ) domain containing 5	AK009491|Kbtbd5|72330|kelch repeat and BTB (POZ) domain containing 5	AK078669|Kbtbd5|72330|kelch repeat and BTB (POZ) domain containing 5	AK160799|Kbtbd5|72330|kelch repeat and BTB (POZ) domain containing 5
mm9_v1_chr15_-_3533122_3533246	0.636064	NHLH1,2.p2	AK143925|Ghr|14600|growth hormone receptor	BC056645|Ghr|14600|growth hormone receptor	BC024375|Ghr|14600|growth hormone receptor	BC075720|Ghr|14600|growth hormone receptor	AK053579|Ghr|14600|growth hormone receptor	NM_001048178|Ghr|14600|growth hormone receptor	NM_010284|Ghr|14600|growth hormone receptor
mm9_v1_chr4_+_63205780_63205910	0.635665	NHLH1,2.p2	NM_024173|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK081611|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK007596|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK010131|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK168972|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK169079|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK088712|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	BC003429|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK003563|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK152699|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK159558|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AB076406|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	BC088836|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1
mm9_v1_chr2_-_154233754_154233847	0.635009	NHLH1,2.p2	BC018546|Snta1|20648|syntrophin, acidic 1	U00677|Snta1|20648|syntrophin, acidic 1	AK137379|Snta1|20648|syntrophin, acidic 1	NM_009228|Snta1|20648|syntrophin, acidic 1
mm9_v1_chr10_+_42221973_42222268	0.633696	NHLH1,2.p2	BC116885|Snx3|54198|sorting nexin 3	BC116889|Snx3|54198|sorting nexin 3	AK145350|Snx3|54198|sorting nexin 3	AK154728|Snx3|54198|sorting nexin 3	AF062482|Snx3|54198|sorting nexin 3	AK007798|Snx3|54198|sorting nexin 3	AK013261|Snx3|54198|sorting nexin 3	AK018790|Snx3|54198|sorting nexin 3	AK189751|Snx3|54198|sorting nexin 3
mm9_v1_chr9_+_121619443_121619529	0.632681	NHLH1,2.p2	AK049702|Deb1|26901|differentially expressed in B16F10 1	AK003863|Deb1|26901|differentially expressed in B16F10 1	BC027548|Deb1|26901|differentially expressed in B16F10 1	NM_026794|Deb1|26901|differentially expressed in B16F10 1
mm9_v1_chr4_-_12098960_12099006	0.631514	NHLH1,2.p2	BC055848|Fam92a|68099|family with sequence similarity 92, member A	AK013129|Fam92a|68099|family with sequence similarity 92, member A	AK019574|Fam92a|68099|family with sequence similarity 92, member A
mm9_v1_chr2_-_165151935_165152001	0.630515	NHLH1,2.p2	AK047040|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK050823|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK053574|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK032033|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	BC023954|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK038097|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK045428|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK129023|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	NM_080287|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	NM_207706|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)
mm9_v1_chr9_+_108838660_108838726	0.629186	NHLH1,2.p2	NM_025407|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK004031|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK160337|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK002292|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK151764|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK010553|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK013128|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK168218|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK167911|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	BC030064|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1
mm9_v1_chr11_-_100573717_100573767	0.629132	NHLH1,2.p2	AF254441|Kat2a|14534|K(lysine) acetyltransferase 2A	AK147042|Kat2a|14534|K(lysine) acetyltransferase 2A	AK150225|Kat2a|14534|K(lysine) acetyltransferase 2A	AK137358|Kat2a|14534|K(lysine) acetyltransferase 2A	AK155347|Kat2a|14534|K(lysine) acetyltransferase 2A	BC051952|Kat2a|14534|K(lysine) acetyltransferase 2A	BC060050|Kat2a|14534|K(lysine) acetyltransferase 2A	BC063752|Kat2a|14534|K(lysine) acetyltransferase 2A	AK145205|Kat2a|14534|K(lysine) acetyltransferase 2A	AK154866|Kat2a|14534|K(lysine) acetyltransferase 2A	AK158079|Kat2a|14534|K(lysine) acetyltransferase 2A
mm9_v1_chr13_+_43218207_43218244	0.628844	NHLH1,2.p2	NM_001005748|Phactr1|218194|phosphatase and actin regulator 1	AK166463|Phactr1|218194|phosphatase and actin regulator 1	BC025873|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr4_-_12098948_12098955	0.628181	NHLH1,2.p2	BC020162|Fam92a|68099|family with sequence similarity 92, member A
mm9_v1_chr19_-_4121544_4121574	0.62795	NHLH1,2.p2	AK146390|Aip|11632|aryl-hydrocarbon receptor-interacting protein
mm9_v1_chr4_+_8462805_8462808	0.627272	NHLH1,2.p2	AK135421|Rab2a|59021|RAB2A, member RAS oncogene family	AK163320|Rab2a|59021|RAB2A, member RAS oncogene family	AK146179|Rab2a|59021|RAB2A, member RAS oncogene family
mm9_v1_chr5_+_143722032_143722059	0.62694	NHLH1,2.p2	NM_007984|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	AK083935|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	AK167670|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	BC052408|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	BC029281|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	BC010338|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	BC037137|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	L33726|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)
mm9_v1_chr11_+_69652013_69652075	0.626548	NHLH1,2.p2	BC048542|1810027O10Rik|69186|RIKEN cDNA 1810027O10 gene	BC117077|1810027O10Rik|69186|RIKEN cDNA 1810027O10 gene	BC117079|1810027O10Rik|69186|RIKEN cDNA 1810027O10 gene	NM_026982|1810027O10Rik|69186|RIKEN cDNA 1810027O10 gene	AK007623|1810027O10Rik|69186|RIKEN cDNA 1810027O10 gene	AK014035|1810027O10Rik|69186|RIKEN cDNA 1810027O10 gene
mm9_v1_chr10_+_24315247_24315401	0.626542	NHLH1,2.p2	NM_010217|Ctgf|14219|connective tissue growth factor	BC006783|Ctgf|14219|connective tissue growth factor	M80263|Ctgf|14219|connective tissue growth factor	M70642|Ctgf|14219|connective tissue growth factor
mm9_v1_chr4_+_42930076_42930171	0.625975	NHLH1,2.p2	BC057092|N28178|230085|expressed sequence N28178	NM_172690|N28178|230085|expressed sequence N28178	AK046283|N28178|230085|expressed sequence N28178	AK038528|N28178|230085|expressed sequence N28178
mm9_v1_chr4_+_42625654_42625690	0.62504	NHLH1,2.p2	BC087957|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)	NM_001193666|Gm13304|100504346|predicted gene 13304	NM_001193668|Gm10591|100504239|predicted gene 10591	NM_023052|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)	BC038120|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	NM_011335|Ccl21b|100042493|chemokine (C-C motif) ligand 21B (leucine)	U88322|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)
mm9_v1_chr10_-_42893894_42894226	0.624973	NHLH1,2.p2	DQ157775|Sobp|109205|sine oculis-binding protein homolog (Drosophila)	BC057055|Sobp|109205|sine oculis-binding protein homolog (Drosophila)
mm9_v1_chr14_-_21365595_21365800	0.624933	NHLH1,2.p2	BC037668|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	AK135203|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	M81483|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	AB221678|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	BC066000|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	NM_008914|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform
mm9_v1_chr8_-_87323958_87324038	0.623303	NHLH1,2.p2	BC003766|Nfix|18032|nuclear factor I/X	Y07689|Nfix|18032|nuclear factor I/X
mm9_v1_chr6_-_83781657_83781701	0.623056	NHLH1,2.p2	BC017133|Paip2b|232164|poly(A) binding protein interacting protein 2B	BC034096|Paip2b|232164|poly(A) binding protein interacting protein 2B	BC039969|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK173114|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK168804|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK045922|Paip2b|232164|poly(A) binding protein interacting protein 2B
mm9_v1_chrY_+_347036_347061	0.622661	NHLH1,2.p2	AK012186|Eif2s3y|26908|eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked	AK153974|Eif2s3y|26908|eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked	AK009448|Eif2s3y|26908|eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked	AJ006584|Eif2s3y|26908|eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked	BC043656|Eif2s3y|26908|eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked	NM_012011|Eif2s3y|26908|eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked	BC031450|Eif2s3y|26908|eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked
mm9_v1_chr10_-_77632399_77632581	0.62123	NHLH1,2.p2	BC013475|D10Jhu81e|28295|DNA segment, Chr 10, Johns Hopkins University 81 expressed	AK003866|D10Jhu81e|28295|DNA segment, Chr 10, Johns Hopkins University 81 expressed	NM_138601|D10Jhu81e|28295|DNA segment, Chr 10, Johns Hopkins University 81 expressed
mm9_v1_chr5_+_122660225_122660306	0.619663	NHLH1,2.p2	AK186675|Hvcn1|74096|hydrogen voltage-gated channel 1	AK002854|Hvcn1|74096|hydrogen voltage-gated channel 1	NM_028752|Hvcn1|74096|hydrogen voltage-gated channel 1
mm9_v1_chr18_-_6241341_6241371	0.61928	NHLH1,2.p2	U86090|Kif5b|16573|kinesin family member 5B
mm9_v1_chr10_-_83111346_83111470	0.618362	NHLH1,2.p2	BC048906|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK171512|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK168748|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK168403|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK160105|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK160075|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AY113706|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	NM_145220|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK161003|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK154525|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2
mm9_v1_chrX_+_82293610_82293751	0.618097	NHLH1,2.p2	AK045257|Dmd|13405|dystrophin, muscular dystrophy	AK013510|Dmd|13405|dystrophin, muscular dystrophy	AK075809|Dmd|13405|dystrophin, muscular dystrophy	AK087829|Dmd|13405|dystrophin, muscular dystrophy	AK036936|Dmd|13405|dystrophin, muscular dystrophy
mm9_v1_chr14_-_70205351_70205356	0.618049	NHLH1,2.p2	AK021405|Rhobtb2|246710|Rho-related BTB domain containing 2	NM_153514|Rhobtb2|246710|Rho-related BTB domain containing 2
mm9_v1_chr8_-_41596638_41596711	0.617336	NHLH1,2.p2	AK044535|Cnot7|18983|CCR4-NOT transcription complex, subunit 7	NM_011135|Cnot7|18983|CCR4-NOT transcription complex, subunit 7
mm9_v1_chr7_+_6238181_6238231	0.617323	NHLH1,2.p2	AY850275|Zfp667|384763|zinc finger protein 667	BC049673|Zfp667|384763|zinc finger protein 667	NM_001024928|Zfp667|384763|zinc finger protein 667	AK080616|Zfp667|384763|zinc finger protein 667	BC141152|Zfp667|384763|zinc finger protein 667	BC141153|Zfp667|384763|zinc finger protein 667	AK164056|Zfp667|384763|zinc finger protein 667
mm9_v1_chr8_+_121918768_121918845	0.617165	NHLH1,2.p2	BC004764|Mlycd|56690|malonyl-CoA decarboxylase	NM_019966|Mlycd|56690|malonyl-CoA decarboxylase	AK171095|Mlycd|56690|malonyl-CoA decarboxylase	AK082479|Mlycd|56690|malonyl-CoA decarboxylase	AK051564|Mlycd|56690|malonyl-CoA decarboxylase
mm9_v1_chr13_-_8870231_8870293	0.617159	NHLH1,2.p2	AK129254|Wdr37|207615|WD repeat domain 37	AK032582|Wdr37|207615|WD repeat domain 37	AK146209|Wdr37|207615|WD repeat domain 37	AK014128|Wdr37|207615|WD repeat domain 37	AK044740|Wdr37|207615|WD repeat domain 37	AK036203|Wdr37|207615|WD repeat domain 37	NM_001039389|Wdr37|207615|WD repeat domain 37	NM_172445|Wdr37|207615|WD repeat domain 37
mm9_v1_chr2_+_31325763_31325817	0.616847	NHLH1,2.p2	BC002074|Ass1|11898|argininosuccinate synthetase 1	NM_007494|Ass1|11898|argininosuccinate synthetase 1
mm9_v1_chr1_+_173341438_173341535	0.616617	NHLH1,2.p2	AK142437|Usf1|22278|upstream transcription factor 1	BC049784|Usf1|22278|upstream transcription factor 1
mm9_v1_chr17_+_36131397_36131470	0.616429	NHLH1,2.p2	AK078380|A930015D03Rik|77810|RIKEN cDNA A930015D03 gene	AK020860|A930015D03Rik|77810|RIKEN cDNA A930015D03 gene	AK142942|A930015D03Rik|77810|RIKEN cDNA A930015D03 gene	BC055918|A930015D03Rik|77810|RIKEN cDNA A930015D03 gene
mm9_v1_chr4_-_134409149_134409155	0.615731	NHLH1,2.p2	AK038972|Tmem57|66146|transmembrane protein 57	BC054769|Tmem57|66146|transmembrane protein 57
mm9_v1_chr9_+_45211220_45211296	0.615662	NHLH1,2.p2	AY626244|Fxyd2|11936|FXYD domain-containing ion transport regulator 2	NM_052823|Fxyd2|11936|FXYD domain-containing ion transport regulator 2	BC069892|Fxyd2|11936|FXYD domain-containing ion transport regulator 2
mm9_v1_chr5_-_21207184_21207211	0.615253	NHLH1,2.p2	BC062890|Napepld|242864|N-acyl phosphatidylethanolamine phospholipase D	AK049135|Napepld|242864|N-acyl phosphatidylethanolamine phospholipase D	AK141585|Napepld|242864|N-acyl phosphatidylethanolamine phospholipase D
mm9_v1_chr12_-_3309887_3309978	0.614543	NHLH1,2.p2	AK134988|Rab10|19325|RAB10, member RAS oncogene family	AK150791|Rab10|19325|RAB10, member RAS oncogene family	AK153325|Rab10|19325|RAB10, member RAS oncogene family	BC052735|Rab10|19325|RAB10, member RAS oncogene family	BC056374|Rab10|19325|RAB10, member RAS oncogene family	AK160960|Rab10|19325|RAB10, member RAS oncogene family	AK150319|Rab10|19325|RAB10, member RAS oncogene family	AK153315|Rab10|19325|RAB10, member RAS oncogene family	AK159988|Rab10|19325|RAB10, member RAS oncogene family	AK168320|Rab10|19325|RAB10, member RAS oncogene family	AK087964|Rab10|19325|RAB10, member RAS oncogene family	AK159383|Rab10|19325|RAB10, member RAS oncogene family	AK159845|Rab10|19325|RAB10, member RAS oncogene family	AK028320|Rab10|19325|RAB10, member RAS oncogene family	AK166010|Rab10|19325|RAB10, member RAS oncogene family	AK045299|Rab10|19325|RAB10, member RAS oncogene family	AK008725|Rab10|19325|RAB10, member RAS oncogene family	AK146357|Rab10|19325|RAB10, member RAS oncogene family	NM_016676|Rab10|19325|RAB10, member RAS oncogene family
mm9_v1_chr11_-_97883716_97883773	0.614239	NHLH1,2.p2	AF068898|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	AY094172|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	AY094173|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit
mm9_v1_chr14_+_56109905_56110009	0.613586	NHLH1,2.p2	AK148355|Lrrc16b|268747|leucine rich repeat containing 16B	NM_001024645|Lrrc16b|268747|leucine rich repeat containing 16B	BC092223|Lrrc16b|268747|leucine rich repeat containing 16B	BC082805|Lrrc16b|268747|leucine rich repeat containing 16B
mm9_v1_chr7_+_149646716_149646734	0.613032	NHLH1,2.p2	D49691|Lsp1|16985|lymphocyte specific 1
mm9_v1_chr15_-_64753721_64753861	0.612851	NHLH1,2.p2	U85021|Adcy8|11514|adenylate cyclase 8	BC094231|Adcy8|11514|adenylate cyclase 8	AK163443|Adcy8|11514|adenylate cyclase 8	AK138244|Adcy8|11514|adenylate cyclase 8	NM_009623|Adcy8|11514|adenylate cyclase 8
mm9_v1_chr5_+_30431701_30431755	0.61167	NHLH1,2.p2	NM_001167879|Fam59b|242915|family with sequence similarity 59, member B
mm9_v1_chr17_-_65929913_65929945	0.611567	NHLH1,2.p2	
mm9_v1_chrX_+_70473616_70473668	0.61105	NHLH1,2.p2	BC131938|F8a|14070|factor 8-associated gene A	BC131940|F8a|14070|factor 8-associated gene A	AK046025|F8a|14070|factor 8-associated gene A	AK046459|F8a|14070|factor 8-associated gene A	AK166334|F8a|14070|factor 8-associated gene A	AK033184|F8a|14070|factor 8-associated gene A	AK054140|F8a|14070|factor 8-associated gene A	NM_007978|F8a|14070|factor 8-associated gene A
mm9_v1_chr1_-_82287990_82288082	0.610137	NHLH1,2.p2	AK045317|Irs1|16367|insulin receptor substrate 1	NM_010570|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr17_+_46848407_46848441	0.609476	NHLH1,2.p2	BC003424|Pex6|224824|peroxisomal biogenesis factor 6	NM_145488|Pex6|224824|peroxisomal biogenesis factor 6	AK083898|Pex6|224824|peroxisomal biogenesis factor 6	AK143173|Pex6|224824|peroxisomal biogenesis factor 6	AK030565|Pex6|224824|peroxisomal biogenesis factor 6	AK220525|Pex6|224824|peroxisomal biogenesis factor 6
mm9_v1_chr8_+_107800316_107800347	0.609343	NHLH1,2.p2	AK079536|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	BC027290|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	AY459322|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	AK053846|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	NM_030152|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)
mm9_v1_chr14_+_58693951_58693999	0.608856	NHLH1,2.p2	AK158584|Fgf9|14180|fibroblast growth factor 9
mm9_v1_chr8_+_114060659_114060939	0.608586	NHLH1,2.p2	BC086770|Znrf1|170737|zinc and ring finger 1	AF378525|Znrf1|170737|zinc and ring finger 1	BC006765|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr5_-_84846348_84846408	0.606712	NHLH1,2.p2	BC057401|Epha5|13839|Eph receptor A5	AK133698|Epha5|13839|Eph receptor A5	AK034289|Epha5|13839|Eph receptor A5	AK049740|Epha5|13839|Eph receptor A5	NM_007937|Epha5|13839|Eph receptor A5
mm9_v1_chr9_-_58049842_58049944	0.603717	NHLH1,2.p2	EU497918|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	BC059068|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2
mm9_v1_chr19_+_60832080_60832311	0.603267	NHLH1,2.p2	AK139148|Nanos1|332397|nanos homolog 1 (Drosophila)	BC056473|Nanos1|332397|nanos homolog 1 (Drosophila)	AK046189|Nanos1|332397|nanos homolog 1 (Drosophila)	AB095029|Nanos1|332397|nanos homolog 1 (Drosophila)
mm9_v1_chr8_-_110112352_110112366	0.602332	NHLH1,2.p2	AK158379|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	BC130014|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	BC013513|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
mm9_v1_chr6_+_124946723_124946772	0.601805	NHLH1,2.p2	AK082984|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_175696|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr11_-_4018706_4018793	0.599724	NHLH1,2.p2	BC005759|Sec14l2|67815|SEC14-like 2 (S. cerevisiae)	NM_144520|Sec14l2|67815|SEC14-like 2 (S. cerevisiae)
mm9_v1_chr19_+_5490454_5490570	0.598497	NHLH1,2.p2	NM_007687|Cfl1|12631|cofilin 1, non-muscle	AK020471|Cfl1|12631|cofilin 1, non-muscle	D00472|Cfl1|12631|cofilin 1, non-muscle	AK088633|Cfl1|12631|cofilin 1, non-muscle	AK088793|Cfl1|12631|cofilin 1, non-muscle	AK050651|Cfl1|12631|cofilin 1, non-muscle	AK167795|Cfl1|12631|cofilin 1, non-muscle	AK013943|Cfl1|12631|cofilin 1, non-muscle	BC058726|Cfl1|12631|cofilin 1, non-muscle	BC094357|Cfl1|12631|cofilin 1, non-muscle	BC046225|Cfl1|12631|cofilin 1, non-muscle
mm9_v1_chr8_+_26830853_26830927	0.597304	NHLH1,2.p2	AK007542|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC039626|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B
mm9_v1_chr11_+_78640103_78640114	0.596461	NHLH1,2.p2	BC130224|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	AK009070|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene
mm9_v1_chr4_+_130469187_130469272	0.596336	NHLH1,2.p2	AK171481|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK089432|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171269|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171285|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171575|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK172486|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171057|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171280|Laptm5|16792|lysosomal-associated protein transmembrane 5	U51239|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171571|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK170690|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171250|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171053|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK089508|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171149|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK170867|Laptm5|16792|lysosomal-associated protein transmembrane 5	AF364050|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171270|Laptm5|16792|lysosomal-associated protein transmembrane 5	U29539|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK031802|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK050633|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK153877|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK163146|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171105|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171172|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171213|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171244|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171547|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK172306|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK172707|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK089535|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171116|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171193|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171236|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK150299|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK152918|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK155744|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171274|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171562|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK170438|Laptm5|16792|lysosomal-associated protein transmembrane 5	NM_010686|Laptm5|16792|lysosomal-associated protein transmembrane 5	BC020993|Laptm5|16792|lysosomal-associated protein transmembrane 5	BC055057|Laptm5|16792|lysosomal-associated protein transmembrane 5	BC114403|Laptm5|16792|lysosomal-associated protein transmembrane 5
mm9_v1_chr14_-_21871345_21871395	0.595789	NHLH1,2.p2	BC024595|Ap3m1|55946|adaptor-related protein complex 3, mu 1 subunit
mm9_v1_chr19_-_58935470_58935484	0.594813	NHLH1,2.p2	AY196789|Hspa12a|73442|heat shock protein 12A	AK141925|Hspa12a|73442|heat shock protein 12A	NM_175199|Hspa12a|73442|heat shock protein 12A
mm9_v1_chr15_-_102552527_102552608	0.59433	NHLH1,2.p2	AK087513|Calcoco1|67488|calcium binding and coiled coil domain 1	NM_026192|Calcoco1|67488|calcium binding and coiled coil domain 1
mm9_v1_chr4_+_41985509_41985545	0.594266	NHLH1,2.p2	BC087957|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)	NM_001193666|Gm13304|100504346|predicted gene 13304	NM_001193668|Gm10591|100504239|predicted gene 10591	NM_023052|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)	BC038120|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	NM_011335|Ccl21b|100042493|chemokine (C-C motif) ligand 21B (leucine)	U88322|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)
mm9_v1_chr16_+_31664022_31664124	0.593914	NHLH1,2.p2	AK220189|Dlg1|13383|discs, large homolog 1 (Drosophila)	BC057118|Dlg1|13383|discs, large homolog 1 (Drosophila)	NM_007862|Dlg1|13383|discs, large homolog 1 (Drosophila)
mm9_v1_chr8_-_87323896_87323913	0.59374	NHLH1,2.p2	U57636|Nfix|18032|nuclear factor I/X
mm9_v1_chr5_-_115636064_115636129	0.592519	NHLH1,2.p2	AB079604|Cabp1|29867|calcium binding protein 1	AF169152|Cabp1|29867|calcium binding protein 1	AF169153|Cabp1|29867|calcium binding protein 1	NM_013879|Cabp1|29867|calcium binding protein 1
mm9_v1_chr18_-_61946264_61946277	0.592021	NHLH1,2.p2	BC094505|Afap1l1|106877|actin filament associated protein 1-like 1	BC138923|Afap1l1|106877|actin filament associated protein 1-like 1
mm9_v1_chr13_-_31911790_31911820	0.591927	NHLH1,2.p2	
mm9_v1_chr19_-_5802596_5802674	0.591822	NHLH1,2.p2	AK020134|Malat1|72289|metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	AK019083|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AK084336|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AK088913|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	EF177380|Malat1|72289|metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	AK009681|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AK028133|Ramp2|54409|receptor (calcitonin) activity modifying protein 2
mm9_v1_chr16_+_36828464_36828529	0.591158	NHLH1,2.p2	NM_177128|Iqcb1|320299|IQ calmodulin-binding motif containing 1	BC029084|Iqcb1|320299|IQ calmodulin-binding motif containing 1	AK078554|Iqcb1|320299|IQ calmodulin-binding motif containing 1	AK165220|Iqcb1|320299|IQ calmodulin-binding motif containing 1
mm9_v1_chr19_+_46431369_46431437	0.589503	NHLH1,2.p2	NM_029186|Tmem180|75146|transmembrane protein 180	AK151797|Tmem180|75146|transmembrane protein 180	AK161305|Tmem180|75146|transmembrane protein 180	BC058746|Tmem180|75146|transmembrane protein 180	AK031554|Tmem180|75146|transmembrane protein 180	BC031169|Tmem180|75146|transmembrane protein 180
mm9_v1_chr10_-_80170504_80170531	0.587982	NHLH1,2.p2	AK205331|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit
mm9_v1_chr4_+_21858472_21858503	0.587409	NHLH1,2.p2	AK144924|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	NM_175234|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK081616|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK082464|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK018081|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene
mm9_v1_chr8_+_13159112_13159277	0.585787	NHLH1,2.p2	NM_010684|Lamp1|16783|lysosomal-associated membrane protein 1	BC049097|Lamp1|16783|lysosomal-associated membrane protein 1	AY069968|Lamp1|16783|lysosomal-associated membrane protein 1	AK172007|Lamp1|16783|lysosomal-associated membrane protein 1	AK159096|Lamp1|16783|lysosomal-associated membrane protein 1	AK004637|Lamp1|16783|lysosomal-associated membrane protein 1
mm9_v1_chr17_-_24646136_24646304	0.583292	NHLH1,2.p2	
mm9_v1_chr3_+_106904470_106904486	0.581592	NHLH1,2.p2	AK044342|Kcna2|16490|potassium voltage-gated channel, shaker-related subfamily, member 2	NM_008417|Kcna2|16490|potassium voltage-gated channel, shaker-related subfamily, member 2
mm9_v1_chr3_+_88425352_88425437	0.58132	NHLH1,2.p2	AK167628|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AK171223|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr7_+_51846254_51846289	0.580859	NHLH1,2.p2	NM_008422|Kcnc3|16504|potassium voltage gated channel, Shaw-related subfamily, member 3
mm9_v1_chr14_+_35123922_35124003	0.579788	NHLH1,2.p2	BC052724|Glud1|14661|glutamate dehydrogenase 1	BC057347|Glud1|14661|glutamate dehydrogenase 1
mm9_v1_chr13_-_54795149_54795222	0.579658	NHLH1,2.p2	BC017630|Rnf44|105239|ring finger protein 44	BC035548|Rnf44|105239|ring finger protein 44
mm9_v1_chr15_-_44946248_44946315	0.5788	NHLH1,2.p2	AK076120|Kcnv1|67498|potassium channel, subfamily V, member 1	AK012275|Kcnv1|67498|potassium channel, subfamily V, member 1	AK139482|Kcnv1|67498|potassium channel, subfamily V, member 1
mm9_v1_chr7_-_30836383_30836414	0.578139	NHLH1,2.p2	AK030632|Zfp14|243906|zinc finger protein 14	AK045631|Zfp14|243906|zinc finger protein 14	AK028663|Zfp14|243906|zinc finger protein 14	BC066057|Zfp14|243906|zinc finger protein 14	AK032214|Zfp14|243906|zinc finger protein 14	NM_011748|Zfp14|243906|zinc finger protein 14	NM_178733|Zfp14|243906|zinc finger protein 14
mm9_v1_chr13_+_67006343_67006350	0.577739	NHLH1,2.p2	AK139034|Gm10767|100038538|predicted gene 10767	NM_001177750|Gm10767|100038538|predicted gene 10767
mm9_v1_chr4_+_44769430_44769541	0.577294	NHLH1,2.p2	NM_138590|Zcchc7|319885|zinc finger, CCHC domain containing 7	AK032353|Zcchc7|319885|zinc finger, CCHC domain containing 7	AK039158|Zcchc7|319885|zinc finger, CCHC domain containing 7	AK043238|Zcchc7|319885|zinc finger, CCHC domain containing 7	AK080785|Zcchc7|319885|zinc finger, CCHC domain containing 7	AK157728|Zcchc7|319885|zinc finger, CCHC domain containing 7	BC117020|Zcchc7|319885|zinc finger, CCHC domain containing 7	BC117022|Zcchc7|319885|zinc finger, CCHC domain containing 7	BC144774|Zcchc7|319885|zinc finger, CCHC domain containing 7
mm9_v1_chr4_-_153534748_153534817	0.577082	NHLH1,2.p2	BC019544|Tprgl|67808|transformation related protein 63 regulated like	AK004777|Tprgl|67808|transformation related protein 63 regulated like	AK155413|Tprgl|67808|transformation related protein 63 regulated like	NM_026388|Tprgl|67808|transformation related protein 63 regulated like
mm9_v1_chr4_-_33276711_33276711	0.576222	NHLH1,2.p2	AK145296|Pm20d2|242377|peptidase M20 domain containing 2	NM_001034867|Pm20d2|242377|peptidase M20 domain containing 2
mm9_v1_chr8_-_67373715_67373728	0.576008	NHLH1,2.p2	BC031144|Klhl2|77113|kelch-like 2, Mayven (Drosophila)	NM_178633|Klhl2|77113|kelch-like 2, Mayven (Drosophila)
mm9_v1_chr15_-_93167238_93167272	0.575003	NHLH1,2.p2	BC002192|Yaf2|67057|YY1 associated factor 2
mm9_v1_chr6_+_55967502_55967523	0.574659	NHLH1,2.p2	BC026822|Gsbs|19051|G substrate	NM_011153|Gsbs|19051|G substrate	AF071562|Gsbs|19051|G substrate
mm9_v1_chr6_+_55967487_55967494	0.574401	NHLH1,2.p2	AK078335|Gsbs|19051|G substrate	AF500906|Gsbs|19051|G substrate
mm9_v1_chr6_-_149049906_149050060	0.574093	NHLH1,2.p2	BC132199|Dennd5b|320560|DENN/MADD domain containing 5B	BC132535|Dennd5b|320560|DENN/MADD domain containing 5B	BC145128|Dennd5b|320560|DENN/MADD domain containing 5B	AK052296|Dennd5b|320560|DENN/MADD domain containing 5B	AK050728|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr18_-_61946299_61946348	0.573648	NHLH1,2.p2	AK053714|Afap1l1|106877|actin filament associated protein 1-like 1	AK035227|Afap1l1|106877|actin filament associated protein 1-like 1	NM_178928|Afap1l1|106877|actin filament associated protein 1-like 1
mm9_v1_chr3_-_94276817_94276835	0.573522	NHLH1,2.p2	AK019569|Riiad1|66353|regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1
mm9_v1_chr2_+_145611851_145611951	0.5722	NHLH1,2.p2	NM_028724|Rin2|74030|Ras and Rab interactor 2	BC040390|Rin2|74030|Ras and Rab interactor 2
mm9_v1_chr16_+_16983500_16983501	0.571646	NHLH1,2.p2	AK035386|Mapk1|26413|mitogen-activated protein kinase 1
mm9_v1_chr3_+_36762025_36762077	0.570869	NHLH1,2.p2	AK172264|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene	NM_172679|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene	AK030086|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene	AK041411|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene	AK220265|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene
mm9_v1_chr11_-_99982808_99982882	0.570534	NHLH1,2.p2	NM_010662|Krt13|16663|keratin 13	BC060286|Krt13|16663|keratin 13	AK004635|Krt13|16663|keratin 13	AK010156|Krt13|16663|keratin 13	AK132640|Krt13|16663|keratin 13
mm9_v1_chr2_-_33226980_33226997	0.570416	NHLH1,2.p2	AK129123|Ralgps1|241308|Ral GEF with PH domain and SH3 binding motif 1	AK017939|Ralgps1|241308|Ral GEF with PH domain and SH3 binding motif 1	AK076767|Ralgps1|241308|Ral GEF with PH domain and SH3 binding motif 1	NM_175211|Ralgps1|241308|Ral GEF with PH domain and SH3 binding motif 1
mm9_v1_chr15_-_102552494_102552522	0.570113	NHLH1,2.p2	AK018734|Calcoco1|67488|calcium binding and coiled coil domain 1	AK007393|Calcoco1|67488|calcium binding and coiled coil domain 1	BC054783|Calcoco1|67488|calcium binding and coiled coil domain 1	AK220400|Calcoco1|67488|calcium binding and coiled coil domain 1	AK035598|Calcoco1|67488|calcium binding and coiled coil domain 1
mm9_v1_chr13_+_49516585_49516657	0.569226	NHLH1,2.p2	AK167467|Ippk|75678|inositol 1,3,4,5,6-pentakisphosphate 2-kinase	AK029085|Ippk|75678|inositol 1,3,4,5,6-pentakisphosphate 2-kinase	AK160092|Ippk|75678|inositol 1,3,4,5,6-pentakisphosphate 2-kinase	BC024630|Ippk|75678|inositol 1,3,4,5,6-pentakisphosphate 2-kinase
mm9_v1_chr4_-_61869287_61869463	0.569035	NHLH1,2.p2	AK032469|Zfp37|22696|zinc finger protein 37	BC063757|Zfp37|22696|zinc finger protein 37
mm9_v1_chr4_-_133527108_133527157	0.566828	NHLH1,2.p2	AK205621|Dhdds|67422|dehydrodolichyl diphosphate synthase
mm9_v1_chr15_+_99223377_99223451	0.566614	NHLH1,2.p2	NM_001171034|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	NM_001171036|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	NM_026669|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK019865|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK050299|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK088030|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK088683|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK139901|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK159380|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK166935|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK036782|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK036994|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK049604|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK050323|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	BC005588|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6
mm9_v1_chr11_+_120575231_120575329	0.566292	NHLH1,2.p2	AK081566|Lrrc45|217366|leucine rich repeat containing 45	AK153361|Lrrc45|217366|leucine rich repeat containing 45	NM_153545|Lrrc45|217366|leucine rich repeat containing 45	BC023296|Lrrc45|217366|leucine rich repeat containing 45
mm9_v1_chr10_+_61111271_61111326	0.566037	NHLH1,2.p2	AK145640|Ppa1|67895|pyrophosphatase (inorganic) 1
mm9_v1_chr16_-_4789869_4789937	0.564901	NHLH1,2.p2	AK017480|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK005157|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	BC004063|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK149939|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK150219|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK051560|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK031705|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	NM_025670|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene
mm9_v1_chr5_+_125343060_125343124	0.564467	NHLH1,2.p2	AK143192|Zfp664|269704|zinc finger protein 664	AK086580|Zfp664|269704|zinc finger protein 664	AK039671|Zfp664|269704|zinc finger protein 664	NM_001081750|Zfp664|269704|zinc finger protein 664	AK165974|Zfp664|269704|zinc finger protein 664
mm9_v1_chr6_-_121423633_121423663	0.563848	NHLH1,2.p2	AK147351|Iqsec3|243621|IQ motif and Sec7 domain 3
mm9_v1_chr1_-_170362388_170362504	0.563673	NHLH1,2.p2	NM_008783|Pbx1|18514|pre B-cell leukemia transcription factor 1	NM_183355|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr19_-_7015923_7016010	0.562956	NHLH1,2.p2	BC048078|Gpr137|107173|G protein-coupled receptor 137	AK170308|Gpr137|107173|G protein-coupled receptor 137	NM_001177362|Gpr137|107173|G protein-coupled receptor 137
mm9_v1_chr6_+_13019758_13019870	0.562256	NHLH1,2.p2	NM_027992|Tmem106b|71900|transmembrane protein 106B	AK148477|Tmem106b|71900|transmembrane protein 106B	BC050246|Tmem106b|71900|transmembrane protein 106B	AK018015|Tmem106b|71900|transmembrane protein 106B	AK009646|Tmem106b|71900|transmembrane protein 106B
mm9_v1_chr7_+_25039812_25039838	0.561261	NHLH1,2.p2	AK032355|Zfp108|54678|zinc finger protein 108	NM_018791|Zfp108|54678|zinc finger protein 108	AF167315|Zfp108|54678|zinc finger protein 108
mm9_v1_chr14_-_70842930_70842958	0.560471	NHLH1,2.p2	AK013165|Polr3d|67065|polymerase (RNA) III (DNA directed) polypeptide D
mm9_v1_chr19_+_9026020_9026327	0.559841	NHLH1,2.p2	AK199642|Mta2|23942|metastasis-associated gene family, member 2	AK219174|Mta2|23942|metastasis-associated gene family, member 2	AK195366|Mta2|23942|metastasis-associated gene family, member 2	AK209683|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chr8_-_23587282_23587355	0.557942	NHLH1,2.p2	BC048089|AI316807|102032|expressed sequence AI316807	NM_001012667|AI316807|102032|expressed sequence AI316807	NM_001146117|AI316807|102032|expressed sequence AI316807	AK133712|AI316807|102032|expressed sequence AI316807
mm9_v1_chr11_-_95703752_95703789	0.5575	NHLH1,2.p2	NM_025659|Abi3|66610|ABI gene family, member 3	AK037144|Abi3|66610|ABI gene family, member 3	NM_001163464|Abi3|66610|ABI gene family, member 3
mm9_v1_chr4_+_43394949_43394962	0.557309	NHLH1,2.p2	AK166260|Rusc2|100213|RUN and SH3 domain containing 2
mm9_v1_chr11_-_100573772_100573800	0.556471	NHLH1,2.p2	AK155791|Kat2a|14534|K(lysine) acetyltransferase 2A	AK155842|Kat2a|14534|K(lysine) acetyltransferase 2A	NM_001038010|Kat2a|14534|K(lysine) acetyltransferase 2A	NM_020004|Kat2a|14534|K(lysine) acetyltransferase 2A
mm9_v1_chr16_+_20672847_20672848	0.555278	NHLH1,2.p2	AK134557|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr9_+_21903702_21903764	0.554917	NHLH1,2.p2	Z19542|Cnn1|12797|calponin 1	AK035548|Cnn1|12797|calponin 1	BC138863|Cnn1|12797|calponin 1	BC138864|Cnn1|12797|calponin 1	BC145446|Cnn1|12797|calponin 1
mm9_v1_chr19_+_44368165_44368165	0.55434	NHLH1,2.p2	AK147406|Scd2|20250|stearoyl-Coenzyme A desaturase 2	NM_009128|Scd2|20250|stearoyl-Coenzyme A desaturase 2
mm9_v1_chr6_-_125186982_125187044	0.553818	NHLH1,2.p2	AK153895|Cd27|21940|CD27 antigen	BC139125|Cd27|21940|CD27 antigen	BC139126|Cd27|21940|CD27 antigen	BC171931|Cd27|21940|CD27 antigen	AK137770|Cd27|21940|CD27 antigen	AK154005|Cd27|21940|CD27 antigen	NM_001033126|Cd27|21940|CD27 antigen	NM_001042564|Cd27|21940|CD27 antigen
mm9_v1_chr19_-_4190836_4191046	0.55295	NHLH1,2.p2	AK154444|Tbc1d10c|108995|TBC1 domain family, member 10c	BC094901|Tbc1d10c|108995|TBC1 domain family, member 10c	AK088119|Tbc1d10c|108995|TBC1 domain family, member 10c	AK131177|Tbc1d10c|108995|TBC1 domain family, member 10c	AK075803|Tbc1d10c|108995|TBC1 domain family, member 10c	AK146426|Tbc1d10c|108995|TBC1 domain family, member 10c	AK153836|Tbc1d10c|108995|TBC1 domain family, member 10c	AK040487|Tbc1d10c|108995|TBC1 domain family, member 10c	NM_178650|Tbc1d10c|108995|TBC1 domain family, member 10c
mm9_v1_chr4_-_115690263_115690388	0.552693	NHLH1,2.p2	U82536|Faah|14073|fatty acid amide hydrolase	AK032079|Faah|14073|fatty acid amide hydrolase	BC006863|Faah|14073|fatty acid amide hydrolase	AK004985|Faah|14073|fatty acid amide hydrolase	AK080603|Faah|14073|fatty acid amide hydrolase
mm9_v1_chr3_+_88425294_88425344	0.551728	NHLH1,2.p2	NM_001198912|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	NM_001198913|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr9_+_14305110_14305173	0.551593	NHLH1,2.p2	AK003834|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK002864|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK145249|Cwc15|66070|CWC15 homolog (S. cerevisiae)	BC004726|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK013670|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK167776|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK168365|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK003202|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AJ250394|Cwc15|66070|CWC15 homolog (S. cerevisiae)
mm9_v1_chr9_-_106587984_106588005	0.550766	NHLH1,2.p2	AK009326|Tex264|21767|testis expressed gene 264	NM_011573|Tex264|21767|testis expressed gene 264	X80428|Tex264|21767|testis expressed gene 264
mm9_v1_chr2_+_130389461_130389507	0.550522	NHLH1,2.p2	AK169837|Mrps26|99045|mitochondrial ribosomal protein S26	AK131626|Mrps26|99045|mitochondrial ribosomal protein S26	BC048517|Mrps26|99045|mitochondrial ribosomal protein S26	NM_207207|Mrps26|99045|mitochondrial ribosomal protein S26
mm9_v1_chr11_-_116714406_116714411	0.550372	NHLH1,2.p2	AK165670|Srsf2|20382|serine/arginine-rich splicing factor 2	NM_011358|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr19_+_47303332_47303400	0.549878	NHLH1,2.p2	NM_001163480|Neurl1a|18011|neuralized homolog 1A (Drosophila)	AF401228|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr9_+_110379461_110379473	0.549333	NHLH1,2.p2	NM_010628|Kif9|16578|kinesin family member 9
mm9_v1_chr16_+_3884618_3884768	0.548208	NHLH1,2.p2	NM_029090|Nat15|74763|N-acetyltransferase 15 (GCN5-related, putative)	AK039910|Nat15|74763|N-acetyltransferase 15 (GCN5-related, putative)	BC004837|Nat15|74763|N-acetyltransferase 15 (GCN5-related, putative)	AK088736|Nat15|74763|N-acetyltransferase 15 (GCN5-related, putative)	AK004750|Nat15|74763|N-acetyltransferase 15 (GCN5-related, putative)
mm9_v1_chr2_+_29989278_29989390	0.548057	NHLH1,2.p2	AK158066|Tbc1d13|70296|TBC1 domain family, member 13	AK188413|Tbc1d13|70296|TBC1 domain family, member 13	BC025586|Tbc1d13|70296|TBC1 domain family, member 13	NM_146252|Tbc1d13|70296|TBC1 domain family, member 13
mm9_v1_chr5_-_33617629_33617630	0.547723	NHLH1,2.p2	AK149906|Ctbp1|13016|C-terminal binding protein 1
mm9_v1_chr11_-_109472695_109472714	0.547429	NHLH1,2.p2	NM_145940|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	AK031672|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	AK045131|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	AK050495|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1
mm9_v1_chr7_-_4636141_4636274	0.547379	NHLH1,2.p2	AF338351|Hspbp1|66245|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
mm9_v1_chr1_+_37486981_37487095	0.547199	NHLH1,2.p2	AK132757|Unc50|67387|unc-50 homolog (C. elegans)	NM_026123|Unc50|67387|unc-50 homolog (C. elegans)	AK135885|Unc50|67387|unc-50 homolog (C. elegans)	AK003273|Unc50|67387|unc-50 homolog (C. elegans)	AY017214|Unc50|67387|unc-50 homolog (C. elegans)	AK004433|Unc50|67387|unc-50 homolog (C. elegans)	BC019484|Unc50|67387|unc-50 homolog (C. elegans)
mm9_v1_chr6_+_30351871_30351895	0.546986	NHLH1,2.p2	AK085116|Klhdc10|76788|kelch domain containing 10
mm9_v1_chr7_-_117129643_117129675	0.546881	NHLH1,2.p2	AK167021|Tmem41b|233724|transmembrane protein 41B	AK166845|Tmem41b|233724|transmembrane protein 41B
mm9_v1_chr19_-_6982516_6982562	0.546666	NHLH1,2.p2	AK209224|Prdx5|54683|peroxiredoxin 5
mm9_v1_chr3_+_89195758_89195785	0.546322	NHLH1,2.p2	
mm9_v1_chr17_+_24607348_24607427	0.546138	NHLH1,2.p2	BC083113|Pgp|67078|phosphoglycolate phosphatase	BC040100|Pgp|67078|phosphoglycolate phosphatase	NM_025954|Pgp|67078|phosphoglycolate phosphatase
mm9_v1_chr16_+_11984205_11984205	0.545581	NHLH1,2.p2	AK012380|Shisa9|72555|shisa homolog 9 (Xenopus laevis)	NM_001174086|Shisa9|72555|shisa homolog 9 (Xenopus laevis)	NM_028277|Shisa9|72555|shisa homolog 9 (Xenopus laevis)
mm9_v1_chr1_+_172574662_172574663	0.545545	NHLH1,2.p2	AK042424|Olfml2b|320078|olfactomedin-like 2B	NM_177068|Olfml2b|320078|olfactomedin-like 2B
mm9_v1_chr7_+_53172153_53172156	0.543697	NHLH1,2.p2	
mm9_v1_chr14_-_70553597_70553617	0.543342	NHLH1,2.p2	AK050238|2610301G19Rik|219158|RIKEN cDNA 2610301G19 gene	NM_146055|2610301G19Rik|219158|RIKEN cDNA 2610301G19 gene	BC021475|2610301G19Rik|219158|RIKEN cDNA 2610301G19 gene
mm9_v1_chr8_+_23587151_23587348	0.542217	NHLH1,2.p2	NM_011394|Slc20a2|20516|solute carrier family 20, member 2	AK170985|Slc20a2|20516|solute carrier family 20, member 2	BC046510|Slc20a2|20516|solute carrier family 20, member 2	AK157206|Slc20a2|20516|solute carrier family 20, member 2	AK087507|Slc20a2|20516|solute carrier family 20, member 2
mm9_v1_chr10_-_126626878_126627109	0.541802	NHLH1,2.p2	AK158684|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	NM_001166413|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	AF487515|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	AK010452|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	BC041113|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	NM_028027|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25
mm9_v1_chr2_-_154202541_154202588	0.541774	NHLH1,2.p2	
mm9_v1_chr14_-_96918064_96918252	0.540462	NHLH1,2.p2	AK031932|Klhl1|93688|kelch-like 1 (Drosophila)	AF252281|Klhl1|93688|kelch-like 1 (Drosophila)	BC094584|Klhl1|93688|kelch-like 1 (Drosophila)	NM_053105|Klhl1|93688|kelch-like 1 (Drosophila)
mm9_v1_chr5_-_137971968_137971994	0.540176	NHLH1,2.p2	U34960|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	BC029077|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2
mm9_v1_chr11_-_102758460_102758513	0.540132	NHLH1,2.p2	BC139357|Gfap|14580|glial fibrillary acidic protein	BC139358|Gfap|14580|glial fibrillary acidic protein	NM_001131020|Gfap|14580|glial fibrillary acidic protein	NM_010277|Gfap|14580|glial fibrillary acidic protein
mm9_v1_chr19_+_6418755_6418803	0.539754	NHLH1,2.p2	AK147295|Nrxn2|18190|neurexin II	AK147665|Nrxn2|18190|neurexin II
mm9_v1_chr1_+_94728217_94728298	0.53862	NHLH1,2.p2	AK154899|Gpc1|14733|glypican 1	AF185613|Gpc1|14733|glypican 1	NM_016696|Gpc1|14733|glypican 1
mm9_v1_chr14_+_118536326_118536519	0.53854	NHLH1,2.p2	NM_021434|Gpr180|58245|G protein-coupled receptor 180	AK169908|Gpr180|58245|G protein-coupled receptor 180	AB041545|Gpr180|58245|G protein-coupled receptor 180	AK170316|Gpr180|58245|G protein-coupled receptor 180	BC055726|Gpr180|58245|G protein-coupled receptor 180	AK053422|Gpr180|58245|G protein-coupled receptor 180	BC069981|Gpr180|58245|G protein-coupled receptor 180	AK212055|Gpr180|58245|G protein-coupled receptor 180
mm9_v1_chr4_-_134091164_134091245	0.538157	NHLH1,2.p2	AK080126|Fam54b|76824|family with sequence similarity 54, member B	AK010825|Fam54b|76824|family with sequence similarity 54, member B	AK089141|Fam54b|76824|family with sequence similarity 54, member B	AK145362|Fam54b|76824|family with sequence similarity 54, member B	AK171703|Fam54b|76824|family with sequence similarity 54, member B	AK169047|Fam54b|76824|family with sequence similarity 54, member B
mm9_v1_chr13_+_85329102_85329221	0.537744	NHLH1,2.p2	BC038861|Ccnh|66671|cyclin H	AK217691|Ccnh|66671|cyclin H
mm9_v1_chr10_+_57514349_57514589	0.536609	NHLH1,2.p2	NM_020561|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	Y08135|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	AK002455|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	AK152282|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	BC139288|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	BC139289|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	AK151683|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A
mm9_v1_chr4_+_97444312_97444317	0.535902	NHLH1,2.p2	NM_001122953|Nfia|18027|nuclear factor I/A	NM_010905|Nfia|18027|nuclear factor I/A
mm9_v1_chr2_+_174155515_174155590	0.535335	NHLH1,2.p2	BC038067|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK078037|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK159563|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_201616|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr7_-_148379755_148379780	0.534858	NHLH1,2.p2	BC011083|Hras1|15461|Harvey rat sarcoma virus oncogene 1
mm9_v1_chrX_+_135751704_135751704	0.534532	NHLH1,2.p2	NM_001164631|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1	NM_001164632|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1	NM_001164633|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1
mm9_v1_chr9_+_56978554_56978597	0.53234	NHLH1,2.p2	AK170642|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK049370|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK153935|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK171110|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK158387|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK163077|Man2c1|73744|mannosidase, alpha, class 2C, member 1	BC016253|Man2c1|73744|mannosidase, alpha, class 2C, member 1	NM_028636|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK171599|Man2c1|73744|mannosidase, alpha, class 2C, member 1
mm9_v1_chr2_+_29745582_29745619	0.532044	NHLH1,2.p2	NM_001177662|Odf2|18286|outer dense fiber of sperm tails 2	NM_013615|Odf2|18286|outer dense fiber of sperm tails 2	AF034105|Odf2|18286|outer dense fiber of sperm tails 2
mm9_v1_chr6_+_145070255_145070333	0.531348	NHLH1,2.p2	AK040180|Lrmp|16970|lymphoid-restricted membrane protein	NM_008511|Lrmp|16970|lymphoid-restricted membrane protein	AK153823|Lrmp|16970|lymphoid-restricted membrane protein	AK160009|Lrmp|16970|lymphoid-restricted membrane protein	AK050646|Lrmp|16970|lymphoid-restricted membrane protein	AK079932|Lrmp|16970|lymphoid-restricted membrane protein	BC052909|Lrmp|16970|lymphoid-restricted membrane protein
mm9_v1_chr1_-_43149260_43149340	0.530165	NHLH1,2.p2	AK159332|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	AK141742|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1
mm9_v1_chr6_+_79969636_79969636	0.529604	NHLH1,2.p2	NM_178731|Lrrtm4|243499|leucine rich repeat transmembrane neuronal 4
mm9_v1_chr5_-_147396407_147396450	0.529557	NHLH1,2.p2	D21061|Gpr12|14738|G-protein coupled receptor 12
mm9_v1_chr7_-_107520359_107520405	0.529328	NHLH1,2.p2	AK146051|Ppme1|72590|protein phosphatase methylesterase 1	BC029064|Ppme1|72590|protein phosphatase methylesterase 1	BC014867|Ppme1|72590|protein phosphatase methylesterase 1	NM_028292|Ppme1|72590|protein phosphatase methylesterase 1
mm9_v1_chr4_+_155205723_155205804	0.529013	NHLH1,2.p2	AK003442|Aurkaip1|66077|aurora kinase A interacting protein 1	NM_025338|Aurkaip1|66077|aurora kinase A interacting protein 1	AK002737|Aurkaip1|66077|aurora kinase A interacting protein 1	AK158165|Aurkaip1|66077|aurora kinase A interacting protein 1	AK033452|Aurkaip1|66077|aurora kinase A interacting protein 1	AK166049|Aurkaip1|66077|aurora kinase A interacting protein 1	BC011245|Aurkaip1|66077|aurora kinase A interacting protein 1	AK144719|Aurkaip1|66077|aurora kinase A interacting protein 1
mm9_v1_chr6_-_86683191_86683319	0.528761	NHLH1,2.p2	AF186095|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AK132788|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AF282322|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AF163665|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)
mm9_v1_chr2_+_69735513_69735613	0.528227	NHLH1,2.p2	BC145475|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3	BC172146|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3
mm9_v1_chr11_+_99734702_99734753	0.527818	NHLH1,2.p2	NM_015741|Krtap9-1|16705|keratin associated protein 9-1	BC116210|Krtap9-1|16705|keratin associated protein 9-1
mm9_v1_chr18_-_62071494_62071513	0.526005	NHLH1,2.p2	NM_001164491|Ablim3|319713|actin binding LIM protein family, member 3
mm9_v1_chr11_+_58120557_58120580	0.524353	NHLH1,2.p2	AK170229|Zfp692|103836|zinc finger protein 692	AK080545|Zfp692|103836|zinc finger protein 692	NM_001040686|Zfp692|103836|zinc finger protein 692	NM_182996|Zfp692|103836|zinc finger protein 692
mm9_v1_chr17_-_56279684_56279770	0.523641	NHLH1,2.p2	AK139358|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	AK143229|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	NM_001130456|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
mm9_v1_chrX_-_98615096_98615252	0.522934	NHLH1,2.p2	BC042699|Zmym3|56364|zinc finger, MYM-type 3	BC050131|Zmym3|56364|zinc finger, MYM-type 3	AK033470|Zmym3|56364|zinc finger, MYM-type 3	BC108366|Zmym3|56364|zinc finger, MYM-type 3	NM_001177985|Zmym3|56364|zinc finger, MYM-type 3	NM_001177986|Zmym3|56364|zinc finger, MYM-type 3
mm9_v1_chr10_-_126558035_126558203	0.522197	NHLH1,2.p2	BC006844|Os9|216440|amplified in osteosarcoma	BC031768|Os9|216440|amplified in osteosarcoma	AK028047|Os9|216440|amplified in osteosarcoma
mm9_v1_chr6_-_93863547_93863683	0.52202	NHLH1,2.p2	AK163800|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083321|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	BC060273|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083320|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr9_-_66891535_66891699	0.521803	NHLH1,2.p2	NM_001164252|Tpm1|22003|tropomyosin 1, alpha	NM_001164253|Tpm1|22003|tropomyosin 1, alpha	NM_001164254|Tpm1|22003|tropomyosin 1, alpha	NM_001164256|Tpm1|22003|tropomyosin 1, alpha
mm9_v1_chr9_+_110379481_110379600	0.521085	NHLH1,2.p2	AK029776|Kif9|16578|kinesin family member 9	AK087008|Kif9|16578|kinesin family member 9	NM_001163569|Kif9|16578|kinesin family member 9	AJ132889|Kif9|16578|kinesin family member 9	BC115765|Kif9|16578|kinesin family member 9	AK029506|Kif9|16578|kinesin family member 9
mm9_v1_chr2_-_42508486_42508592	0.520784	NHLH1,2.p2	BC064765|Lrp1b|94217|low density lipoprotein-related protein 1B (deleted in tumors)	AK080989|Lrp1b|94217|low density lipoprotein-related protein 1B (deleted in tumors)	AK039425|Lrp1b|94217|low density lipoprotein-related protein 1B (deleted in tumors)
mm9_v1_chr12_-_113205152_113205166	0.520749	NHLH1,2.p2	BC055712|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene
mm9_v1_chr10_+_79482419_79482458	0.520451	NHLH1,2.p2	BC053750|Hmha1|70719|histocompatibility (minor) HA-1	NM_027521|Hmha1|70719|histocompatibility (minor) HA-1	AK044860|Hmha1|70719|histocompatibility (minor) HA-1
mm9_v1_chr7_+_28474358_28474458	0.519244	NHLH1,2.p2	NM_001112731|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene	AK140966|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene	AK141645|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene
mm9_v1_chr14_+_9047015_9047035	0.517895	NHLH1,2.p2	AK159067|Kctd6|71393|potassium channel tetramerisation domain containing 6
mm9_v1_chr17_+_31523178_31523231	0.51772	NHLH1,2.p2	NM_001163748|Pde9a|18585|phosphodiesterase 9A	NM_008804|Pde9a|18585|phosphodiesterase 9A	AK030509|Pde9a|18585|phosphodiesterase 9A	BC061163|Pde9a|18585|phosphodiesterase 9A	AK168143|Pde9a|18585|phosphodiesterase 9A	BC025882|Pde9a|18585|phosphodiesterase 9A	AF031147|Pde9a|18585|phosphodiesterase 9A	AF068247|Pde9a|18585|phosphodiesterase 9A	BC038675|Pde9a|18585|phosphodiesterase 9A	BC046915|Pde9a|18585|phosphodiesterase 9A
mm9_v1_chr1_-_59176902_59176978	0.516773	NHLH1,2.p2	BC147243|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	BC147244|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	AK161697|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	NM_001033449|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4
mm9_v1_chr14_+_34736772_34736788	0.516647	NHLH1,2.p2	BC058358|Gdf10|14560|growth differentiation factor 10	NM_145741|Gdf10|14560|growth differentiation factor 10	AK042684|Gdf10|14560|growth differentiation factor 10
mm9_v1_chr11_+_58120583_58120673	0.516547	NHLH1,2.p2	BC055041|Zfp692|103836|zinc finger protein 692	AK154896|Zfp692|103836|zinc finger protein 692	AK031177|Zfp692|103836|zinc finger protein 692	BC145470|Zfp692|103836|zinc finger protein 692	BC150776|Zfp692|103836|zinc finger protein 692
mm9_v1_chr11_-_88922061_88922089	0.515876	NHLH1,2.p2	AK147841|Dgke|56077|diacylglycerol kinase, epsilon	NM_019505|Dgke|56077|diacylglycerol kinase, epsilon
mm9_v1_chr10_+_26492282_26492396	0.515807	NHLH1,2.p2	BC030858|Arhgap18|73910|Rho GTPase activating protein 18	NM_176837|Arhgap18|73910|Rho GTPase activating protein 18	AK087800|Arhgap18|73910|Rho GTPase activating protein 18	AK014728|Arhgap18|73910|Rho GTPase activating protein 18
mm9_v1_chr4_-_25208902_25208983	0.515077	NHLH1,2.p2	AK032663|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC058809|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	AK129211|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	AK007993|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	AK076206|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC132195|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC138153|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	AK132697|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC080203|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC099529|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	NM_026194|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene
mm9_v1_chr6_-_137597616_137597640	0.514934	NHLH1,2.p2	AK166156|Eps8|13860|epidermal growth factor receptor pathway substrate 8	NM_007945|Eps8|13860|epidermal growth factor receptor pathway substrate 8
mm9_v1_chr11_-_62352690_62352764	0.514751	NHLH1,2.p2	BC147794|Cenpv|73139|centromere protein V	BC147795|Cenpv|73139|centromere protein V	BC147835|Cenpv|73139|centromere protein V	BC147837|Cenpv|73139|centromere protein V	AK014046|Cenpv|73139|centromere protein V	NM_028448|Cenpv|73139|centromere protein V
mm9_v1_chr11_-_3271326_3271358	0.514717	NHLH1,2.p2	BC086629|Limk2|16886|LIM motif-containing protein kinase 2	AK146099|Limk2|16886|LIM motif-containing protein kinase 2
mm9_v1_chr10_+_51953451_51953613	0.513889	NHLH1,2.p2	AK014521|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1
mm9_v1_chr2_+_28323580_28323619	0.51241	NHLH1,2.p2	AK051184|Mrps2|118451|mitochondrial ribosomal protein S2	AK172120|Mrps2|118451|mitochondrial ribosomal protein S2	NM_001166031|Mrps2|118451|mitochondrial ribosomal protein S2	NM_080452|Mrps2|118451|mitochondrial ribosomal protein S2	AK154131|Mrps2|118451|mitochondrial ribosomal protein S2	AB055389|Mrps2|118451|mitochondrial ribosomal protein S2	AK160129|Mrps2|118451|mitochondrial ribosomal protein S2	AK165956|Mrps2|118451|mitochondrial ribosomal protein S2	AK156412|Mrps2|118451|mitochondrial ribosomal protein S2	AK171699|Mrps2|118451|mitochondrial ribosomal protein S2	AK172432|Mrps2|118451|mitochondrial ribosomal protein S2	BC048377|Mrps2|118451|mitochondrial ribosomal protein S2	BC033460|Mrps2|118451|mitochondrial ribosomal protein S2	BC060503|Mrps2|118451|mitochondrial ribosomal protein S2
mm9_v1_chr18_+_11998043_11998097	0.512035	NHLH1,2.p2	AK158396|Cables1|63955|CDK5 and Abl enzyme substrate 1	AF328140|Cables1|63955|CDK5 and Abl enzyme substrate 1
mm9_v1_chr15_-_73253617_73253652	0.511805	NHLH1,2.p2	AK220543|Ptk2|14083|PTK2 protein tyrosine kinase 2	NM_001130409|Ptk2|14083|PTK2 protein tyrosine kinase 2	NM_007982|Ptk2|14083|PTK2 protein tyrosine kinase 2	AK005468|Ptk2|14083|PTK2 protein tyrosine kinase 2
mm9_v1_chr3_-_37623250_37623411	0.511601	NHLH1,2.p2	AK039231|Gm5148|381438|predicted gene 5148	AK039519|Gm5148|381438|predicted gene 5148	AK039710|Gm5148|381438|predicted gene 5148	NM_198657|Gm5148|381438|predicted gene 5148	AK045832|Gm5148|381438|predicted gene 5148
mm9_v1_chr5_-_110698882_110698900	0.511565	NHLH1,2.p2	AK012159|Pgam5|72542|phosphoglycerate mutase family member 5	AK034588|Pgam5|72542|phosphoglycerate mutase family member 5	BC138924|Pgam5|72542|phosphoglycerate mutase family member 5	BC138925|Pgam5|72542|phosphoglycerate mutase family member 5	BC145467|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr14_-_76956664_76956695	0.511302	NHLH1,2.p2	BC100483|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	BC115492|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	BC115493|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2
mm9_v1_chr16_+_17759703_17759801	0.508672	NHLH1,2.p2	NM_145479|Klhl22|224023|kelch-like 22 (Drosophila)	AK086748|Klhl22|224023|kelch-like 22 (Drosophila)	AK012046|Klhl22|224023|kelch-like 22 (Drosophila)	AK028197|Klhl22|224023|kelch-like 22 (Drosophila)	AK030669|Klhl22|224023|kelch-like 22 (Drosophila)	AK143514|Klhl22|224023|kelch-like 22 (Drosophila)
mm9_v1_chr11_+_77908168_77908192	0.508215	NHLH1,2.p2	AK085728|BC017647|216971|cDNA sequence BC017647	NM_145430|BC017647|216971|cDNA sequence BC017647	AK047860|BC017647|216971|cDNA sequence BC017647	AK140562|BC017647|216971|cDNA sequence BC017647
mm9_v1_chr7_-_29086780_29086803	0.507735	NHLH1,2.p2	BC052002|Dll3|13389|delta-like 3 (Drosophila)	AB013440|Dll3|13389|delta-like 3 (Drosophila)	AK144282|Dll3|13389|delta-like 3 (Drosophila)	NM_007866|Dll3|13389|delta-like 3 (Drosophila)
mm9_v1_chr6_-_29559606_29559647	0.507666	NHLH1,2.p2	BC064646|Tnpo3|320938|transportin 3	NM_177296|Tnpo3|320938|transportin 3	AK145723|Tnpo3|320938|transportin 3	AK045143|Tnpo3|320938|transportin 3
mm9_v1_chr6_+_113232300_113232305	0.507571	NHLH1,2.p2	AK042692|Cpne9|211232|copine family member IX	AK137422|Cpne9|211232|copine family member IX	NM_170673|Cpne9|211232|copine family member IX
mm9_v1_chr3_+_88425011_88425071	0.507134	NHLH1,2.p2	NM_008487|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AK156379|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AF177032|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	U28495|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr11_+_4958024_4958308	0.50688	NHLH1,2.p2	AK008807|Rasl10a|75668|RAS-like, family 10, member A	AK044011|Rasl10a|75668|RAS-like, family 10, member A	NM_145216|Rasl10a|75668|RAS-like, family 10, member A	BC107200|Rasl10a|75668|RAS-like, family 10, member A	BC107201|Rasl10a|75668|RAS-like, family 10, member A	AF498251|Rasl10a|75668|RAS-like, family 10, member A
mm9_v1_chr3_-_40886864_40886875	0.506685	NHLH1,2.p2	AK014543|Pgrmc2|70804|progesterone receptor membrane component 2
mm9_v1_chr8_-_123158229_123158270	0.506609	NHLH1,2.p2	AK004494|1190005I06Rik|68918|RIKEN cDNA 1190005I06 gene
mm9_v1_chr11_-_116714173_116714405	0.505898	NHLH1,2.p2	AK204489|Srsf2|20382|serine/arginine-rich splicing factor 2	L13610|Srsf2|20382|serine/arginine-rich splicing factor 2	BC005493|Srsf2|20382|serine/arginine-rich splicing factor 2	AF077858|Srsf2|20382|serine/arginine-rich splicing factor 2	U14648|Srsf2|20382|serine/arginine-rich splicing factor 2	AK161873|Srsf2|20382|serine/arginine-rich splicing factor 2	AK011528|Srsf2|20382|serine/arginine-rich splicing factor 2	AK076448|Srsf2|20382|serine/arginine-rich splicing factor 2	AK086103|Srsf2|20382|serine/arginine-rich splicing factor 2	AK088042|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr15_+_101974792_101974939	0.505356	NHLH1,2.p2	X81584|Igfbp6|16012|insulin-like growth factor binding protein 6	BC012723|Igfbp6|16012|insulin-like growth factor binding protein 6	AK157982|Igfbp6|16012|insulin-like growth factor binding protein 6
mm9_v1_chr4_-_46416895_46416973	0.505347	NHLH1,2.p2	AK077692|Hemgn|93966|hemogen	AY699986|Hemgn|93966|hemogen	AK156536|Hemgn|93966|hemogen	AK171890|Hemgn|93966|hemogen	AK172421|Hemgn|93966|hemogen
mm9_v1_chr4_+_42231042_42231117	0.50534	NHLH1,2.p2	NM_001193667|Gm1987|100504362|predicted gene 1987	AK144258|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	NM_011124|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	AK155924|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	BC025974|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	BC028747|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	BC038120|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	AF001980|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)
mm9_v1_chr9_-_14185685_14185685	0.505323	NHLH1,2.p2	AK173036|Endod1|71946|endonuclease domain containing 1	NM_028013|Endod1|71946|endonuclease domain containing 1
mm9_v1_chr5_-_111239115_111239150	0.505037	NHLH1,2.p2	AK154939|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)
mm9_v1_chr3_+_132973036_132973189	0.503917	NHLH1,2.p2	BC011417|Ppa2|74776|pyrophosphatase (inorganic) 2	NM_146141|Ppa2|74776|pyrophosphatase (inorganic) 2	AK090384|Ppa2|74776|pyrophosphatase (inorganic) 2	AK143475|Ppa2|74776|pyrophosphatase (inorganic) 2
mm9_v1_chr4_-_88368313_88368424	0.503523	NHLH1,2.p2	AK129338|Klhl9|242521|kelch-like 9 (Drosophila)	BC094556|Klhl9|242521|kelch-like 9 (Drosophila)	AK049803|Klhl9|242521|kelch-like 9 (Drosophila)	AK033231|Klhl9|242521|kelch-like 9 (Drosophila)	NM_172871|Klhl9|242521|kelch-like 9 (Drosophila)
mm9_v1_chr9_-_95745663_95745697	0.50231	NHLH1,2.p2	AK133070|Pls1|102502|plastin 1 (I-isoform)	NM_001033210|Pls1|102502|plastin 1 (I-isoform)
mm9_v1_chr13_-_58375469_58375564	0.501048	NHLH1,2.p2	BC052347|Gkap1|56278|G kinase anchoring protein 1	NM_019832|Gkap1|56278|G kinase anchoring protein 1
mm9_v1_chr10_+_79132113_79132186	0.500047	NHLH1,2.p2	BC138515|Gm16517|110012|predicted gene, Gm16517	BC138516|Gm16517|110012|predicted gene, Gm16517	AF303106|Gm16517|110012|predicted gene, Gm16517	NM_148934|Gm16517|110012|predicted gene, Gm16517
mm9_v1_chr11_-_77893873_77893890	0.498961	NHLH1,2.p2	AK012155|Eral1|57837|Era (G-protein)-like 1 (E. coli)	NM_022313|Eral1|57837|Era (G-protein)-like 1 (E. coli)
mm9_v1_chr9_-_21875719_21875761	0.498581	NHLH1,2.p2	AK046492|Zfp653|319601|zinc finger protein 653	AK157635|Zfp653|319601|zinc finger protein 653
mm9_v1_chr8_-_73363282_73363437	0.498507	NHLH1,2.p2	DQ861995|Arrdc2|70807|arrestin domain containing 2	AK046754|Arrdc2|70807|arrestin domain containing 2	BC036384|Arrdc2|70807|arrestin domain containing 2	BC094060|Arrdc2|70807|arrestin domain containing 2	AK135740|Arrdc2|70807|arrestin domain containing 2	AK144323|Arrdc2|70807|arrestin domain containing 2	AK137175|Arrdc2|70807|arrestin domain containing 2
mm9_v1_chr9_+_49148731_49148766	0.498343	NHLH1,2.p2	X55674|Drd2|13489|dopamine receptor D2	BC105663|Drd2|13489|dopamine receptor D2	BC105664|Drd2|13489|dopamine receptor D2	BC105665|Drd2|13489|dopamine receptor D2	BC105666|Drd2|13489|dopamine receptor D2	NM_010077|Drd2|13489|dopamine receptor D2
mm9_v1_chr8_-_87364463_87364577	0.497874	NHLH1,2.p2	X92410|Rad23a|19358|RAD23a homolog (S. cerevisiae)	BC138684|Rad23a|19358|RAD23a homolog (S. cerevisiae)	BC145372|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK009733|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK038300|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK161875|Rad23a|19358|RAD23a homolog (S. cerevisiae)	NM_009010|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK045224|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK165467|Rad23a|19358|RAD23a homolog (S. cerevisiae)
mm9_v1_chr6_-_85087735_85087775	0.497829	NHLH1,2.p2	BC054423|Spr|20751|sepiapterin reductase	BC010400|Spr|20751|sepiapterin reductase	AK004941|Spr|20751|sepiapterin reductase	NM_011467|Spr|20751|sepiapterin reductase	AK154720|Spr|20751|sepiapterin reductase	S77493|Spr|20751|sepiapterin reductase
mm9_v1_chr14_-_32249046_32249246	0.497818	NHLH1,2.p2	AB016835|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)	BC053741|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)	NM_011894|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)
mm9_v1_chr6_-_72382855_72382865	0.497338	NHLH1,2.p2	
mm9_v1_chr5_+_134575561_134575653	0.496562	NHLH1,2.p2	AJ296173|Gatsl2|80909|GATS protein-like 2	AK039122|Gatsl2|80909|GATS protein-like 2	BC094613|Gatsl2|80909|GATS protein-like 2	NM_030719|Gatsl2|80909|GATS protein-like 2	AK052217|Gatsl2|80909|GATS protein-like 2
mm9_v1_chr14_-_56341010_56341044	0.496443	NHLH1,2.p2	AF127656|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127657|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127658|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127659|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127660|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127661|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127662|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	NM_019519|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	BC012214|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AK146917|Rabggta|56187|Rab geranylgeranyl transferase, a subunit
mm9_v1_chr9_+_21903696_21903696	0.495703	NHLH1,2.p2	NM_009922|Cnn1|12797|calponin 1
mm9_v1_chr9_-_21875784_21875847	0.495478	NHLH1,2.p2	AY072705|Zfp653|319601|zinc finger protein 653	BC038037|Zfp653|319601|zinc finger protein 653	NM_177318|Zfp653|319601|zinc finger protein 653	AK171735|Zfp653|319601|zinc finger protein 653
mm9_v1_chr11_+_59661532_59661635	0.495364	NHLH1,2.p2	BC020084|Nt5m|103850|5',3'-nucleotidase, mitochondrial	NM_134029|Nt5m|103850|5',3'-nucleotidase, mitochondrial	AY061970|Nt5m|103850|5',3'-nucleotidase, mitochondrial
mm9_v1_chr11_-_88725877_88725929	0.494787	NHLH1,2.p2	AK076216|Akap1|11640|A kinase (PRKA) anchor protein 1	NM_001042541|Akap1|11640|A kinase (PRKA) anchor protein 1
mm9_v1_chr5_-_111239017_111239099	0.494119	NHLH1,2.p2	BC059835|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK148317|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK156534|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	BC057121|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	NM_009469|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)
mm9_v1_chr2_-_25080160_25080179	0.494078	NHLH1,2.p2	BC022919|Tubb2c|227613|tubulin, beta 2C	BC083319|Tubb2c|227613|tubulin, beta 2C	AK015901|Tubb2c|227613|tubulin, beta 2C	AK167022|Tubb2c|227613|tubulin, beta 2C	AK076895|Tubb2c|227613|tubulin, beta 2C	AK146587|Tubb2c|227613|tubulin, beta 2C
mm9_v1_chr7_-_117129702_117129846	0.493614	NHLH1,2.p2	AK038953|Tmem41b|233724|transmembrane protein 41B	AK165226|Tmem41b|233724|transmembrane protein 41B	AK075726|Tmem41b|233724|transmembrane protein 41B	AK029327|Tmem41b|233724|transmembrane protein 41B	AK053588|Tmem41b|233724|transmembrane protein 41B	AK078357|Tmem41b|233724|transmembrane protein 41B	AK090100|Tmem41b|233724|transmembrane protein 41B	AK139961|Tmem41b|233724|transmembrane protein 41B	AK166427|Tmem41b|233724|transmembrane protein 41B	AK166455|Tmem41b|233724|transmembrane protein 41B	NM_153525|Tmem41b|233724|transmembrane protein 41B	BC027103|Tmem41b|233724|transmembrane protein 41B	AK172876|Tmem41b|233724|transmembrane protein 41B	BC026515|Tmem41b|233724|transmembrane protein 41B	AK033997|Tmem41b|233724|transmembrane protein 41B	AK035266|Tmem41b|233724|transmembrane protein 41B	AK162557|Tmem41b|233724|transmembrane protein 41B	AK150353|Tmem41b|233724|transmembrane protein 41B	AK153048|Tmem41b|233724|transmembrane protein 41B
mm9_v1_chr19_-_38199036_38199055	0.491923	NHLH1,2.p2	AK169338|Rbp4|19662|retinol binding protein 4, plasma
mm9_v1_chr13_+_49516666_49516679	0.491839	NHLH1,2.p2	BC065157|Ippk|75678|inositol 1,3,4,5,6-pentakisphosphate 2-kinase	BC062167|Ippk|75678|inositol 1,3,4,5,6-pentakisphosphate 2-kinase	NM_199056|Ippk|75678|inositol 1,3,4,5,6-pentakisphosphate 2-kinase
mm9_v1_chr4_-_42393043_42393079	0.491785	NHLH1,2.p2	NM_011335|Ccl21b|100042493|chemokine (C-C motif) ligand 21B (leucine)	U88322|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)	BC038120|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	BC087957|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)	NM_001193666|Gm13304|100504346|predicted gene 13304	NM_001193668|Gm10591|100504239|predicted gene 10591	NM_023052|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)
mm9_v1_chr11_+_60268108_60268134	0.491548	NHLH1,2.p2	AJ243590|Drg2|13495|developmentally regulated GTP binding protein 2	NM_021354|Drg2|13495|developmentally regulated GTP binding protein 2
mm9_v1_chr1_+_172574668_172574695	0.491061	NHLH1,2.p2	AK029292|Olfml2b|320078|olfactomedin-like 2B
mm9_v1_chr6_-_94233855_94233910	0.490782	NHLH1,2.p2	AK046635|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	BC095943|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001029850|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_010367|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	AK147358|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr9_-_117161234_117161295	0.490647	NHLH1,2.p2	AK030609|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK033005|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK030478|Rbms3|207181|RNA binding motif, single stranded interacting protein
mm9_v1_chr9_+_111174321_111174442	0.490432	NHLH1,2.p2	BC018474|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	NM_175266|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK032284|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK043518|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK030084|Epm2aip1|77781|EPM2A (laforin) interacting protein 1
mm9_v1_chr1_+_173155414_173155449	0.490197	NHLH1,2.p2	X04119|Apoa2|11807|apolipoprotein A-II	S79794|Apoa2|11807|apolipoprotein A-II
mm9_v1_chr2_+_145685882_145685886	0.489173	NHLH1,2.p2	AK163047|Rin2|74030|Ras and Rab interactor 2
mm9_v1_chr11_-_5662259_5662400	0.489127	NHLH1,2.p2	BC066994|Urgcp|72046|upregulator of cell proliferation	AK035580|Urgcp|72046|upregulator of cell proliferation	AK041953|Urgcp|72046|upregulator of cell proliferation	NM_001077661|Urgcp|72046|upregulator of cell proliferation	AK037923|Urgcp|72046|upregulator of cell proliferation	AK053862|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr11_+_49988344_49988383	0.488054	NHLH1,2.p2	AK019392|3010026O09Rik|68067|RIKEN cDNA 3010026O09 gene	NM_026543|3010026O09Rik|68067|RIKEN cDNA 3010026O09 gene	BC028428|3010026O09Rik|68067|RIKEN cDNA 3010026O09 gene	AK003636|3010026O09Rik|68067|RIKEN cDNA 3010026O09 gene
mm9_v1_chr16_+_58670444_58670490	0.487532	NHLH1,2.p2	AK166512|Cpox|12892|coproporphyrinogen oxidase	BC017680|Cpox|12892|coproporphyrinogen oxidase
mm9_v1_chr14_-_32019974_32020020	0.487232	NHLH1,2.p2	AK122412|Nisch|64652|nischarin	NM_022656|Nisch|64652|nischarin
mm9_v1_chr11_+_69209261_69209338	0.486315	NHLH1,2.p2	AK018782|Lsmd1|78304|LSM domain containing 1	NM_030083|Lsmd1|78304|LSM domain containing 1	BC048499|Lsmd1|78304|LSM domain containing 1	BC062267|Lsmd1|78304|LSM domain containing 1	BC038659|Lsmd1|78304|LSM domain containing 1
mm9_v1_chr13_+_20182408_20182502	0.48562	NHLH1,2.p2	AK155704|Elmo1|140580|engulfment and cell motility 1, ced-12 homolog (C. elegans)	AK220253|Elmo1|140580|engulfment and cell motility 1, ced-12 homolog (C. elegans)
mm9_v1_chr7_-_112788821_112788929	0.484042	NHLH1,2.p2	BC028310|Arfip2|76932|ADP-ribosylation factor interacting protein 2	BC013794|Arfip2|76932|ADP-ribosylation factor interacting protein 2	BC022942|Arfip2|76932|ADP-ribosylation factor interacting protein 2	AK009100|Arfip2|76932|ADP-ribosylation factor interacting protein 2	AK154772|Arfip2|76932|ADP-ribosylation factor interacting protein 2	NM_029802|Arfip2|76932|ADP-ribosylation factor interacting protein 2
mm9_v1_chr5_+_150921233_150921280	0.483639	NHLH1,2.p2	AK157981|Fry|320365|furry homolog (Drosophila)
mm9_v1_chr11_-_98636538_98636646	0.483523	NHLH1,2.p2	AK041047|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK135640|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	X86010|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK137582|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	NM_145434|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK137398|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK146430|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1
mm9_v1_chrX_+_108009728_108009803	0.482697	NHLH1,2.p2	BC138657|Pou3f4|18994|POU domain, class 3, transcription factor 4	BC145919|Pou3f4|18994|POU domain, class 3, transcription factor 4	BC052012|Pou3f4|18994|POU domain, class 3, transcription factor 4	X66603|Pou3f4|18994|POU domain, class 3, transcription factor 4	AK158302|Pou3f4|18994|POU domain, class 3, transcription factor 4	BC086670|Pou3f4|18994|POU domain, class 3, transcription factor 4	NM_008901|Pou3f4|18994|POU domain, class 3, transcription factor 4
mm9_v1_chr11_+_121168199_121168276	0.48268	NHLH1,2.p2	AK004247|Foxk2|68837|forkhead box K2
mm9_v1_chr4_-_42787449_42787524	0.480445	NHLH1,2.p2	AF001980|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	BC038120|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	BC025974|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	BC028747|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	AK155924|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	NM_011124|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	AK144258|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	NM_001193667|Gm1987|100504362|predicted gene 1987
mm9_v1_chr8_+_109580775_109580831	0.480352	NHLH1,2.p2	AK003739|Nip7|66164|nuclear import 7 homolog (S. cerevisiae)	NM_001164472|Nip7|66164|nuclear import 7 homolog (S. cerevisiae)	NM_025391|Nip7|66164|nuclear import 7 homolog (S. cerevisiae)	BC003972|Nip7|66164|nuclear import 7 homolog (S. cerevisiae)	AK006057|Nip7|66164|nuclear import 7 homolog (S. cerevisiae)	AK014290|Nip7|66164|nuclear import 7 homolog (S. cerevisiae)
mm9_v1_chr16_+_4684069_4684136	0.47896	NHLH1,2.p2	NM_001135112|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3	NM_023646|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3	AK167511|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3	AK031250|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3	AK004910|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3	BC027240|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3	AK004575|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3	AK007852|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3	BC003920|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3
mm9_v1_chr17_-_14340738_14340837	0.478704	NHLH1,2.p2	AK041604|Dact2|240025|dapper homolog 2, antagonist of beta-catenin (xenopus)	AK082856|Dact2|240025|dapper homolog 2, antagonist of beta-catenin (xenopus)	BC058740|Dact2|240025|dapper homolog 2, antagonist of beta-catenin (xenopus)	AK141226|Dact2|240025|dapper homolog 2, antagonist of beta-catenin (xenopus)	NM_172826|Dact2|240025|dapper homolog 2, antagonist of beta-catenin (xenopus)
mm9_v1_chr15_-_84387921_84388066	0.478168	NHLH1,2.p2	BC058638|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like
mm9_v1_chr8_+_108225509_108225588	0.478039	NHLH1,2.p2	BC061114|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	AK158848|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	NM_001047435|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	NM_019695|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	BC049593|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	AK003030|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)
mm9_v1_chr10_+_127520319_127520396	0.477893	NHLH1,2.p2	AK166525|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK002621|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK011035|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK083276|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK145684|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK148891|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK150599|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK151081|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK152788|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK152976|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK159737|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK160608|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK166603|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK166979|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK167119|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK168941|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK169184|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK010314|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK159978|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK167764|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	NM_016774|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK151600|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK152730|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK159444|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK167728|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK167160|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK084009|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK153099|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK160199|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK164383|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK168692|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	BC037127|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	BC046616|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AF030559|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	BC013253|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm9_v1_chr9_+_14080805_14080923	0.477238	NHLH1,2.p2	AK017464|Sesn3|75747|sestrin 3	BC132086|Sesn3|75747|sestrin 3	BC138690|Sesn3|75747|sestrin 3
mm9_v1_chr13_-_115178227_115178301	0.475827	NHLH1,2.p2	AF124785|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK020552|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	BC004618|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK011124|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK020108|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	NM_010887|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4
mm9_v1_chrX_-_45388010_45388030	0.475394	NHLH1,2.p2	BC020015|Apln|30878|apelin	DQ832282|Apln|30878|apelin	NM_013912|Apln|30878|apelin	AK042076|Apln|30878|apelin
mm9_v1_chr12_-_28027541_28027588	0.475059	NHLH1,2.p2	AK146514|Sox11|20666|SRY-box containing gene 11	AF009414|Sox11|20666|SRY-box containing gene 11	BC078643|Sox11|20666|SRY-box containing gene 11	AK165693|Sox11|20666|SRY-box containing gene 11	AK165005|Sox11|20666|SRY-box containing gene 11	NM_009234|Sox11|20666|SRY-box containing gene 11
mm9_v1_chr4_+_137806293_137806394	0.474578	NHLH1,2.p2	DQ832275|Sh2d5|230863|SH2 domain containing 5	NM_001099631|Sh2d5|230863|SH2 domain containing 5	BC036961|Sh2d5|230863|SH2 domain containing 5	AK032598|Sh2d5|230863|SH2 domain containing 5
mm9_v1_chr15_+_84062273_84062503	0.474533	NHLH1,2.p2	BC158113|Parvb|170736|parvin, beta	BC138747|Parvb|170736|parvin, beta	BC138748|Parvb|170736|parvin, beta	NM_133167|Parvb|170736|parvin, beta	AK143614|Parvb|170736|parvin, beta	AF237770|Parvb|170736|parvin, beta	AK147758|Parvb|170736|parvin, beta
mm9_v1_chr6_+_149357407_149357610	0.474383	NHLH1,2.p2	AK162699|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	NM_001112796|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	NM_009753|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK051379|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK220497|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK051718|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK082523|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK045975|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK038585|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK043650|Bicd1|12121|bicaudal D homolog 1 (Drosophila)
mm9_v1_chr17_-_34977348_34977350	0.469635	NHLH1,2.p2	
mm9_v1_chr8_-_87417009_87417050	0.469538	NHLH1,2.p2	AK078866|Gcdh|270076|glutaryl-Coenzyme A dehydrogenase
mm9_v1_chr12_+_30687597_30687686	0.469181	NHLH1,2.p2	BC037709|Pxdn|69675|peroxidasin homolog (Drosophila)
mm9_v1_chr13_-_67006250_67006288	0.467595	NHLH1,2.p2	AK008455|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein	AK018769|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein	AK168361|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein	BC086921|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein	BC100601|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein	AK168855|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein	BC031607|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein	AK008945|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein	NM_026219|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein
mm9_v1_chr16_-_97391923_97391986	0.466827	NHLH1,2.p2	AF315558|Dscam|13508|Down syndrome cell adhesion molecule
mm9_v1_chr14_+_21167481_21167541	0.466313	NHLH1,2.p2	AK077495|Fam149b|105428|family with sequence similarity 149, member B	BC057907|Fam149b|105428|family with sequence similarity 149, member B	BC069846|Fam149b|105428|family with sequence similarity 149, member B	BC025183|Fam149b|105428|family with sequence similarity 149, member B	AK037808|Fam149b|105428|family with sequence similarity 149, member B	BC058650|Fam149b|105428|family with sequence similarity 149, member B	BC059221|Fam149b|105428|family with sequence similarity 149, member B
mm9_v1_chr11_+_100981384_100981545	0.46626	NHLH1,2.p2	AK160125|Tubg1|103733|tubulin, gamma 1	BC006581|Tubg1|103733|tubulin, gamma 1	NM_134024|Tubg1|103733|tubulin, gamma 1	AK183189|Tubg1|103733|tubulin, gamma 1	AK192509|Tubg1|103733|tubulin, gamma 1	AK154019|Tubg1|103733|tubulin, gamma 1	AK196283|Tubg1|103733|tubulin, gamma 1
mm9_v1_chr12_-_36769054_36769127	0.465936	NHLH1,2.p2	BC018317|Tspan13|66109|tetraspanin 13	NM_025359|Tspan13|66109|tetraspanin 13	AK158761|Tspan13|66109|tetraspanin 13	AK167979|Tspan13|66109|tetraspanin 13	AK012571|Tspan13|66109|tetraspanin 13	AK090217|Tspan13|66109|tetraspanin 13	AK090322|Tspan13|66109|tetraspanin 13	AK165768|Tspan13|66109|tetraspanin 13	AK167495|Tspan13|66109|tetraspanin 13
mm9_v1_chr4_-_49857641_49857765	0.464966	NHLH1,2.p2	AK173314|Grin3a|242443|glutamate receptor ionotropic, NMDA3A
mm9_v1_chr8_-_87356112_87356159	0.46494	NHLH1,2.p2	AK143395|Dand5|23863|DAN domain family, member 5
mm9_v1_chr11_+_60268143_60268162	0.464683	NHLH1,2.p2	AK012988|Drg2|13495|developmentally regulated GTP binding protein 2	BC082564|Drg2|13495|developmentally regulated GTP binding protein 2
mm9_v1_chr11_-_35793951_35794016	0.463	NHLH1,2.p2	AK220259|Wwc1|211652|WW, C2 and coiled-coil domain containing 1
mm9_v1_chr5_-_68238654_68238670	0.462451	NHLH1,2.p2	DQ503480|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK151709|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503479|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_001038999|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_009727|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503477|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr16_-_65105465_65105679	0.461926	NHLH1,2.p2	BC120507|Htr1f|15557|5-hydroxytryptamine (serotonin) receptor 1F	BC137604|Htr1f|15557|5-hydroxytryptamine (serotonin) receptor 1F	NM_008310|Htr1f|15557|5-hydroxytryptamine (serotonin) receptor 1F	Z14224|Htr1f|15557|5-hydroxytryptamine (serotonin) receptor 1F	AK045364|Htr1f|15557|5-hydroxytryptamine (serotonin) receptor 1F
mm9_v1_chr9_-_14185399_14185474	0.45822	NHLH1,2.p2	BC096490|Endod1|71946|endonuclease domain containing 1	AK079741|Endod1|71946|endonuclease domain containing 1	AK078056|Endod1|71946|endonuclease domain containing 1	BC019813|Endod1|71946|endonuclease domain containing 1	AK086102|Endod1|71946|endonuclease domain containing 1
mm9_v1_chr11_-_109583524_109583607	0.457376	NHLH1,2.p2	BC029169|Fam20a|208659|family with sequence similarity 20, member A	NM_153782|Fam20a|208659|family with sequence similarity 20, member A	AK142932|Fam20a|208659|family with sequence similarity 20, member A
mm9_v1_chr2_-_26244767_26244830	0.45736	NHLH1,2.p2	BC031199|Sdccag3|68112|serologically defined colon cancer antigen 3	AK014885|Sdccag3|68112|serologically defined colon cancer antigen 3	BC061037|Sdccag3|68112|serologically defined colon cancer antigen 3	AK082787|Sdccag3|68112|serologically defined colon cancer antigen 3	AK163690|Sdccag3|68112|serologically defined colon cancer antigen 3	AK021273|Sdccag3|68112|serologically defined colon cancer antigen 3	BC005612|Sdccag3|68112|serologically defined colon cancer antigen 3
mm9_v1_chr13_-_97440734_97440890	0.456776	NHLH1,2.p2	AK159899|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	BC085083|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	AK048784|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	NM_008255|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase
mm9_v1_chr1_+_37426061_37426065	0.456583	NHLH1,2.p2	AK035867|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC120541|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC144747|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC144748|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	NM_172971|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I
mm9_v1_chr5_+_110605719_110605719	0.456153	NHLH1,2.p2	BC053002|Golga3|269682|golgi autoantigen, golgin subfamily a, 3	NM_008146|Golga3|269682|golgi autoantigen, golgin subfamily a, 3
mm9_v1_chr1_+_133737686_133737717	0.455689	NHLH1,2.p2	BC037033|Slc41a1|98396|solute carrier family 41, member 1
mm9_v1_chr10_+_85061155_85061265	0.455653	NHLH1,2.p2	NM_001017525|Btbd11|74007|BTB (POZ) domain containing 11	AK044022|Btbd11|74007|BTB (POZ) domain containing 11
mm9_v1_chr8_+_123192124_123192244	0.455126	NHLH1,2.p2	AK141048|Cox4nb|18117|COX4 neighbor	AK012583|Cox4i1|12857|cytochrome c oxidase subunit IV isoform 1	NM_009941|Cox4i1|12857|cytochrome c oxidase subunit IV isoform 1	AK150447|Cox4i1|12857|cytochrome c oxidase subunit IV isoform 1	M37829|Cox4i1|12857|cytochrome c oxidase subunit IV isoform 1	BC132269|Cox4i1|12857|cytochrome c oxidase subunit IV isoform 1	BC132275|Cox4i1|12857|cytochrome c oxidase subunit IV isoform 1	X54691|Cox4i1|12857|cytochrome c oxidase subunit IV isoform 1	AK019276|Cox4i1|12857|cytochrome c oxidase subunit IV isoform 1
mm9_v1_chr11_+_4886860_4887033	0.454909	NHLH1,2.p2	AK155892|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	NM_007454|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	AK165747|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	AK170376|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	AK159273|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	AK160042|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	Y07919|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	BC008513|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit	AK180383|Ap1b1|11764|adaptor protein complex AP-1, beta 1 subunit
mm9_v1_chr10_+_61111331_61111422	0.454609	NHLH1,2.p2	AK020291|Ppa1|67895|pyrophosphatase (inorganic) 1	AK008575|Ppa1|67895|pyrophosphatase (inorganic) 1	AK033434|Ppa1|67895|pyrophosphatase (inorganic) 1	AK088397|Ppa1|67895|pyrophosphatase (inorganic) 1	NM_026438|Ppa1|67895|pyrophosphatase (inorganic) 1	AK151512|Ppa1|67895|pyrophosphatase (inorganic) 1	AK146300|Ppa1|67895|pyrophosphatase (inorganic) 1
mm9_v1_chr4_-_98484163_98484227	0.454591	NHLH1,2.p2	AK081525|Kank4|242553|KN motif and ankyrin repeat domains 4	BC060737|Kank4|242553|KN motif and ankyrin repeat domains 4	NM_172872|Kank4|242553|KN motif and ankyrin repeat domains 4
mm9_v1_chr13_+_81850415_81850532	0.452946	NHLH1,2.p2	AK046032|Mblac2|72852|metallo-beta-lactamase domain containing 2	NM_028372|Mblac2|72852|metallo-beta-lactamase domain containing 2	AK013594|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC107207|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC114401|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC107206|Mblac2|72852|metallo-beta-lactamase domain containing 2
mm9_v1_chr7_+_51502089_51502113	0.452783	NHLH1,2.p2	AK169789|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	NM_025880|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK036099|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene
mm9_v1_chr8_-_24318788_24318925	0.452746	NHLH1,2.p2	AK161270|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK077561|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK049675|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK045235|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK083589|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK169257|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK167876|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	NM_018743|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)
mm9_v1_chr15_-_31297286_31297513	0.452071	NHLH1,2.p2	AK089667|Ankrd33b|67434|ankyrin repeat domain 33B	AK170894|Ankrd33b|67434|ankyrin repeat domain 33B	AK017844|Ankrd33b|67434|ankyrin repeat domain 33B	AK002572|Ankrd33b|67434|ankyrin repeat domain 33B	AK012871|Ankrd33b|67434|ankyrin repeat domain 33B	AK156757|Ankrd33b|67434|ankyrin repeat domain 33B	BC100327|Ankrd33b|67434|ankyrin repeat domain 33B	NM_001164441|Ankrd33b|67434|ankyrin repeat domain 33B	NM_026153|Ankrd33b|67434|ankyrin repeat domain 33B	NM_027496|Ankrd33b|67434|ankyrin repeat domain 33B
mm9_v1_chr10_-_79379610_79379750	0.451469	NHLH1,2.p2	AK165610|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK159869|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	BC095970|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK081288|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK139047|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK088107|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	NM_177994|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	BC132463|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	BC138461|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene
mm9_v1_chr7_-_135561641_135561759	0.45115	NHLH1,2.p2	BC109178|Rgs10|67865|regulator of G-protein signalling 10	AK152143|Rgs10|67865|regulator of G-protein signalling 10	BC109179|Rgs10|67865|regulator of G-protein signalling 10	AK088009|Rgs10|67865|regulator of G-protein signalling 10	AK009283|Rgs10|67865|regulator of G-protein signalling 10	AK017314|Rgs10|67865|regulator of G-protein signalling 10	AK021202|Rgs10|67865|regulator of G-protein signalling 10	NM_026418|Rgs10|67865|regulator of G-protein signalling 10	AK009686|Rgs10|67865|regulator of G-protein signalling 10
mm9_v1_chr7_+_51502120_51502163	0.451033	NHLH1,2.p2	AK165177|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK010334|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK049154|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK169796|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK169836|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK172418|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK162303|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	BC016099|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene
mm9_v1_chr17_+_64213350_64213395	0.450384	NHLH1,2.p2	AK021175|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2	AK157828|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2
mm9_v1_chr13_+_64533703_64533885	0.450155	NHLH1,2.p2	AY005133|Cdk20|105278|cyclin-dependent kinase 20	BC031907|Cdk20|105278|cyclin-dependent kinase 20	NM_053180|Cdk20|105278|cyclin-dependent kinase 20	BC058353|Cdk20|105278|cyclin-dependent kinase 20
mm9_v1_chrX_-_34185389_34185408	0.45011	NHLH1,2.p2	AK046007|Akap17b|338351|A kinase (PRKA) anchor protein 17B	AK054091|Akap17b|338351|A kinase (PRKA) anchor protein 17B	NM_001081956|Akap17b|338351|A kinase (PRKA) anchor protein 17B
mm9_v1_chr9_+_108594470_108594519	0.450042	NHLH1,2.p2	AF533977|Prkar2a|19087|protein kinase, cAMP dependent regulatory, type II alpha	NM_008924|Prkar2a|19087|protein kinase, cAMP dependent regulatory, type II alpha	BC080276|Prkar2a|19087|protein kinase, cAMP dependent regulatory, type II alpha	BC075623|Prkar2a|19087|protein kinase, cAMP dependent regulatory, type II alpha
mm9_v1_chr2_+_158436493_158436936	0.4496	NHLH1,2.p2	AY578289|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	NM_009508|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	BC052020|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AK163754|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AK140468|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AK163661|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AJ001598|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1
mm9_v1_chr2_-_58210162_58210168	0.449512	NHLH1,2.p2	AK142396|Acvr1c|269275|activin A receptor, type IC	NM_001111030|Acvr1c|269275|activin A receptor, type IC
mm9_v1_chr8_-_24367395_24367561	0.44929	NHLH1,2.p2	BC058523|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK158227|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	BC019697|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AB041568|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK150696|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	BC016894|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	BC103796|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	BC093518|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK077582|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK152606|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK048175|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK170129|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK089856|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK150462|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK151353|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK152520|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK153213|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	NM_001042484|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	NM_020585|Golga7|57437|golgi autoantigen, golgin subfamily a, 7
mm9_v1_chr5_+_108741806_108741943	0.448628	NHLH1,2.p2	NM_001081234|Pigg|433931|phosphatidylinositol glycan anchor biosynthesis, class G
mm9_v1_chr3_+_94968227_94968295	0.448407	NHLH1,2.p2	AF363972|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	AF363973|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	AB013729|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	NM_011351|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
mm9_v1_chr4_-_86876311_86876327	0.446586	NHLH1,2.p2	AK038634|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK034424|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK083127|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr14_+_56210544_56210720	0.445139	NHLH1,2.p2	AK156320|Rnf31|268749|ring finger protein 31	AK157962|Rnf31|268749|ring finger protein 31	BC057595|Rnf31|268749|ring finger protein 31	NM_194346|Rnf31|268749|ring finger protein 31	BC031509|Rnf31|268749|ring finger protein 31	AY283085|Rnf31|268749|ring finger protein 31
mm9_v1_chr10_-_76880955_76880972	0.444734	NHLH1,2.p2	BC051107|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AF403106|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AF403107|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AF403108|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AF403109|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AF525421|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AY162454|Adarb1|110532|adenosine deaminase, RNA-specific, B1	BC062806|Adarb1|110532|adenosine deaminase, RNA-specific, B1
mm9_v1_chr16_-_48994214_48994235	0.444018	NHLH1,2.p2	AK009865|Dzip3|224170|DAZ interacting protein 3, zinc finger	NM_001110017|Dzip3|224170|DAZ interacting protein 3, zinc finger	NM_027341|Dzip3|224170|DAZ interacting protein 3, zinc finger
mm9_v1_chr3_-_107563049_107563194	0.442883	NHLH1,2.p2	M21149|Csf1|12977|colony stimulating factor 1 (macrophage)	M15692|Csf1|12977|colony stimulating factor 1 (macrophage)	AK170154|Csf1|12977|colony stimulating factor 1 (macrophage)	M21952|Csf1|12977|colony stimulating factor 1 (macrophage)	S78392|Csf1|12977|colony stimulating factor 1 (macrophage)	BC066187|Csf1|12977|colony stimulating factor 1 (macrophage)	BC066200|Csf1|12977|colony stimulating factor 1 (macrophage)	BC066205|Csf1|12977|colony stimulating factor 1 (macrophage)	X05010|Csf1|12977|colony stimulating factor 1 (macrophage)	AK136808|Csf1|12977|colony stimulating factor 1 (macrophage)	AK138489|Csf1|12977|colony stimulating factor 1 (macrophage)	AK154872|Csf1|12977|colony stimulating factor 1 (macrophage)	AK160995|Csf1|12977|colony stimulating factor 1 (macrophage)	AK166370|Csf1|12977|colony stimulating factor 1 (macrophage)
mm9_v1_chr16_-_4789939_4789942	0.442844	NHLH1,2.p2	
mm9_v1_chr2_-_72931338_72931457	0.441843	NHLH1,2.p2	
mm9_v1_chr10_-_79502388_79502430	0.440885	NHLH1,2.p2	BC026842|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	AK015823|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	BC045521|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	NM_025554|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	AK010567|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E
mm9_v1_chr2_+_181115939_181116074	0.440883	NHLH1,2.p2	AF115339|Lime1|72699|Lck interacting transmembrane adaptor 1	NM_023684|Lime1|72699|Lck interacting transmembrane adaptor 1	AK172632|Lime1|72699|Lck interacting transmembrane adaptor 1
mm9_v1_chr5_+_147656646_147656733	0.440596	NHLH1,2.p2	NM_026864|Rasl11a|68895|RAS-like, family 11, member A	AK004371|Rasl11a|68895|RAS-like, family 11, member A
mm9_v1_chr14_-_73785035_73785066	0.440052	NHLH1,2.p2	AK002599|Itm2b|16432|integral membrane protein 2B	AK153103|Itm2b|16432|integral membrane protein 2B	AK159307|Itm2b|16432|integral membrane protein 2B	AK003224|Itm2b|16432|integral membrane protein 2B	BC004731|Itm2b|16432|integral membrane protein 2B	AK003587|Itm2b|16432|integral membrane protein 2B	AK003928|Itm2b|16432|integral membrane protein 2B	AK088270|Itm2b|16432|integral membrane protein 2B	AK159340|Itm2b|16432|integral membrane protein 2B	AK159426|Itm2b|16432|integral membrane protein 2B	AK159628|Itm2b|16432|integral membrane protein 2B	AK159792|Itm2b|16432|integral membrane protein 2B	AK160101|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr16_-_48994021_48994056	0.439662	NHLH1,2.p2	BC052893|Dzip3|224170|DAZ interacting protein 3, zinc finger	BC117953|Dzip3|224170|DAZ interacting protein 3, zinc finger	BC117954|Dzip3|224170|DAZ interacting protein 3, zinc finger
mm9_v1_chr5_-_109058675_109058759	0.439435	NHLH1,2.p2	BC062975|Gak|231580|cyclin G associated kinase	BC065051|Gak|231580|cyclin G associated kinase	BC060622|Gak|231580|cyclin G associated kinase	AK161151|Gak|231580|cyclin G associated kinase	BC065052|Gak|231580|cyclin G associated kinase	NM_153569|Gak|231580|cyclin G associated kinase	AK146695|Gak|231580|cyclin G associated kinase
mm9_v1_chr8_-_114214909_114214915	0.439356	NHLH1,2.p2	AK003060|Ctrb1|66473|chymotrypsinogen B1	AK003079|Ctrb1|66473|chymotrypsinogen B1	AK007566|Ctrb1|66473|chymotrypsinogen B1	AK007765|Ctrb1|66473|chymotrypsinogen B1	AK007815|Ctrb1|66473|chymotrypsinogen B1	AK008644|Ctrb1|66473|chymotrypsinogen B1	AK008729|Ctrb1|66473|chymotrypsinogen B1	AK008888|Ctrb1|66473|chymotrypsinogen B1	AK008927|Ctrb1|66473|chymotrypsinogen B1	AK018554|Ctrb1|66473|chymotrypsinogen B1	BC061083|Ctrb1|66473|chymotrypsinogen B1	NM_025583|Ctrb1|66473|chymotrypsinogen B1
mm9_v1_chr15_+_12754561_12754569	0.439062	NHLH1,2.p2	NM_001130149|Drosha|14000|drosha, ribonuclease type III	NM_026799|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr15_+_27396405_27396728	0.438614	NHLH1,2.p2	AK083135|Ank|11732|progressive ankylosis	DQ832285|Ank|11732|progressive ankylosis	NM_020332|Ank|11732|progressive ankylosis	BC042644|Ank|11732|progressive ankylosis	BC054379|Ank|11732|progressive ankylosis	AK148070|Ank|11732|progressive ankylosis	AF001532|Ank|11732|progressive ankylosis	AF274752|Ank|11732|progressive ankylosis
mm9_v1_chr15_+_41620926_41621060	0.438541	NHLH1,2.p2	AK040881|Oxr1|170719|oxidation resistance 1	AF324899|Oxr1|170719|oxidation resistance 1	AF333985|Oxr1|170719|oxidation resistance 1	NM_001130163|Oxr1|170719|oxidation resistance 1	NM_130885|Oxr1|170719|oxidation resistance 1
mm9_v1_chr4_+_117507819_117507873	0.437277	NHLH1,2.p2	NM_008135|Slc6a9|14664|solute carrier family 6 (neurotransmitter transporter, glycine), member 9
mm9_v1_chr12_+_113960379_113960418	0.435613	NHLH1,2.p2	NM_001024602|AW555464|217882|expressed sequence AW555464	AK122236|AW555464|217882|expressed sequence AW555464
mm9_v1_chr13_+_43880475_43880582	0.43556	NHLH1,2.p2	NM_009856|Cd83|12522|CD83 antigen	AK075888|Cd83|12522|CD83 antigen	AK139410|Cd83|12522|CD83 antigen	AK154862|Cd83|12522|CD83 antigen	AK156386|Cd83|12522|CD83 antigen	AK171716|Cd83|12522|CD83 antigen	AK172122|Cd83|12522|CD83 antigen	AK172449|Cd83|12522|CD83 antigen	AK172515|Cd83|12522|CD83 antigen	AK172466|Cd83|12522|CD83 antigen	BC072615|Cd83|12522|CD83 antigen	AK172396|Cd83|12522|CD83 antigen	AJ245551|Cd83|12522|CD83 antigen	BC107344|Cd83|12522|CD83 antigen	BC107345|Cd83|12522|CD83 antigen	AF001036|Cd83|12522|CD83 antigen
mm9_v1_chr1_-_38878059_38878110	0.435108	NHLH1,2.p2	NM_001029878|Lonrf2|381338|LON peptidase N-terminal domain and ring finger 2	BC139127|Lonrf2|381338|LON peptidase N-terminal domain and ring finger 2	BC139130|Lonrf2|381338|LON peptidase N-terminal domain and ring finger 2
mm9_v1_chr8_-_74009902_74009965	0.434991	NHLH1,2.p2	NM_001164679|Ano8|382014|anoctamin 8
mm9_v1_chr12_+_10397864_10397904	0.434541	NHLH1,2.p2	AK142290|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)
mm9_v1_chr11_-_109472715_109472760	0.434035	NHLH1,2.p2	AK159608|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	AK170563|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	AK034907|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1
mm9_v1_chr15_-_79518160_79518352	0.434016	NHLH1,2.p2	AK004913|Josd1|74158|Josephin domain containing 1	NM_028792|Josd1|74158|Josephin domain containing 1	AK154799|Josd1|74158|Josephin domain containing 1
mm9_v1_chr11_+_105898183_105898284	0.433506	NHLH1,2.p2	AK047435|Dcaf7|71833|DDB1 and CUL4 associated factor 7	NM_027946|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK005902|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK154757|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK165674|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK080823|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK137813|Dcaf7|71833|DDB1 and CUL4 associated factor 7	BC048722|Dcaf7|71833|DDB1 and CUL4 associated factor 7	BC048165|Dcaf7|71833|DDB1 and CUL4 associated factor 7
mm9_v1_chr4_+_8462823_8462831	0.433495	NHLH1,2.p2	AK042862|Rab2a|59021|RAB2A, member RAS oncogene family
mm9_v1_chr10_+_18246228_18246361	0.433485	NHLH1,2.p2	AK220386|Nhsl1|215819|NHS-like 1	AK134837|Nhsl1|215819|NHS-like 1	AK043447|Nhsl1|215819|NHS-like 1
mm9_v1_chr5_-_92391581_92391802	0.433414	NHLH1,2.p2	AK015870|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AF305423|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AK084295|Thap6|381650|THAP domain containing 6	AK018364|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AF276959|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AF071222|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AK018488|Rchy1|68098|ring finger and CHY zinc finger domain containing 1
mm9_v1_chr10_-_75130331_75130381	0.433191	NHLH1,2.p2	AK169961|Cabin1|104248|calcineurin binding protein 1	AK171567|Cabin1|104248|calcineurin binding protein 1
mm9_v1_chr2_+_166631011_166631132	0.43244	NHLH1,2.p2	AK087574|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	NM_001085495|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK087920|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	BC158012|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK153722|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm9_v1_chr11_+_5662121_5662197	0.432277	NHLH1,2.p2	AK009198|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	AK005556|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	AK008730|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	BC052911|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	BC094935|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene
mm9_v1_chr9_-_112119764_112119854	0.431334	NHLH1,2.p2	AK137974|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177617|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK050613|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177623|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chr8_+_112229383_112229581	0.431137	NHLH1,2.p2	AK166399|Zfp821|75871|zinc finger protein 821	AK155121|Zfp821|75871|zinc finger protein 821	NM_001167946|Zfp821|75871|zinc finger protein 821	AK157971|Zfp821|75871|zinc finger protein 821	AK136168|Zfp821|75871|zinc finger protein 821	AK165387|Zfp821|75871|zinc finger protein 821	BC032193|Zfp821|75871|zinc finger protein 821
mm9_v1_chr3_+_58380577_58380636	0.430768	NHLH1,2.p2	NM_001040396|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	AK017528|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	AK032838|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	AK047958|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	BC132453|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	BC138424|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	AK013022|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	BC019970|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	AK146778|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene
mm9_v1_chr15_-_64214314_64214400	0.428778	NHLH1,2.p2	AK146545|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1
mm9_v1_chr4_+_41774206_41774242	0.427606	NHLH1,2.p2	BC087957|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)	NM_001193666|Gm13304|100504346|predicted gene 13304	NM_001193668|Gm10591|100504239|predicted gene 10591	NM_023052|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)	BC038120|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	NM_011335|Ccl21b|100042493|chemokine (C-C motif) ligand 21B (leucine)	U88322|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)
mm9_v1_chr12_-_112724033_112724036	0.426311	NHLH1,2.p2	BC145736|Gm266|212539|predicted gene 266	BC145762|Gm266|212539|predicted gene 266	NM_001033248|Gm266|212539|predicted gene 266
mm9_v1_chr16_+_33062606_33062616	0.426104	NHLH1,2.p2	AK030463|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	BC111899|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	BC112428|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	NM_172823|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)
mm9_v1_chr5_+_3596065_3596255	0.424882	NHLH1,2.p2	BC090845|Pex1|71382|peroxisomal biogenesis factor 1	NM_027777|Pex1|71382|peroxisomal biogenesis factor 1
mm9_v1_chr8_+_3515373_3515441	0.424093	NHLH1,2.p2	AF173829|Pnpla6|50767|patatin-like phospholipase domain containing 6	NM_001122818|Pnpla6|50767|patatin-like phospholipase domain containing 6	NM_015801|Pnpla6|50767|patatin-like phospholipase domain containing 6	AK040720|Pnpla6|50767|patatin-like phospholipase domain containing 6	BC054789|Pnpla6|50767|patatin-like phospholipase domain containing 6	BC056999|Pnpla6|50767|patatin-like phospholipase domain containing 6
mm9_v1_chr14_-_123382275_123382482	0.424014	NHLH1,2.p2	AK043293|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK049748|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK039093|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK044391|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK036741|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK045271|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK028333|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK033947|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	NM_028651|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4
mm9_v1_chr10_+_79606611_79606693	0.424009	NHLH1,2.p2	AK186963|Atp5d|66043|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
mm9_v1_chr4_-_150482562_150482580	0.423152	NHLH1,2.p2	AK168378|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr11_+_98657082_98657130	0.42253	NHLH1,2.p2	BC058629|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	NM_028722|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	BC043039|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	AK053719|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	BC055715|Msl1|74026|male-specific lethal 1 homolog (Drosophila)
mm9_v1_chr12_+_33832641_33832680	0.422271	NHLH1,2.p2	AK013145|Atxn7l1|380753|ataxin 7-like 1	BC100598|Atxn7l1|380753|ataxin 7-like 1	BC017546|Atxn7l1|380753|ataxin 7-like 1
mm9_v1_chr9_+_57369014_57369041	0.421941	NHLH1,2.p2	NM_007747|Cox5a|12858|cytochrome c oxidase, subunit Va
mm9_v1_chr14_+_48092235_48092236	0.421543	NHLH1,2.p2	AK020018|Fbxo34|78938|F-box protein 34	NM_001146085|Fbxo34|78938|F-box protein 34	NM_001146086|Fbxo34|78938|F-box protein 34	NM_030236|Fbxo34|78938|F-box protein 34
mm9_v1_chr10_+_41210244_41210283	0.421119	NHLH1,2.p2	NM_028430|Ppil6|73075|peptidylprolyl isomerase (cyclophilin)-like 6	BC147756|Ppil6|73075|peptidylprolyl isomerase (cyclophilin)-like 6	BC147757|Ppil6|73075|peptidylprolyl isomerase (cyclophilin)-like 6	AK013818|Ppil6|73075|peptidylprolyl isomerase (cyclophilin)-like 6
mm9_v1_chr10_-_27336648_27336835	0.420999	NHLH1,2.p2	U12147|Lama2|16773|laminin, alpha 2	AK046114|Lama2|16773|laminin, alpha 2	AK080131|Lama2|16773|laminin, alpha 2	AK030879|Lama2|16773|laminin, alpha 2	NM_008481|Lama2|16773|laminin, alpha 2	AK042011|Lama2|16773|laminin, alpha 2
mm9_v1_chr8_+_3516840_3516873	0.420862	NHLH1,2.p2	AK162641|Pnpla6|50767|patatin-like phospholipase domain containing 6	AK089095|Pnpla6|50767|patatin-like phospholipase domain containing 6
mm9_v1_chr7_+_31548774_31548942	0.420857	NHLH1,2.p2	AK081753|Dmkn|73712|dermokine	NM_001166173|Dmkn|73712|dermokine	NM_001166174|Dmkn|73712|dermokine	NM_172899|Dmkn|73712|dermokine	BC064724|Dmkn|73712|dermokine	AY444557|Dmkn|73712|dermokine	AY622963|Dmkn|73712|dermokine
mm9_v1_chr11_-_20012953_20012967	0.420027	NHLH1,2.p2	NM_146243|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)
mm9_v1_chrX_-_99447501_99447506	0.417813	NHLH1,2.p2	AK148042|Cited1|12705|Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	U65091|Cited1|12705|Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1
mm9_v1_chr17_-_25929201_25929366	0.417724	NHLH1,2.p2	AK132031|Fam173a|214917|family with sequence similarity 173, member A	BC096050|Fam173a|214917|family with sequence similarity 173, member A	NM_145410|Fam173a|214917|family with sequence similarity 173, member A	AK162337|Fam173a|214917|family with sequence similarity 173, member A	AK146214|Fam173a|214917|family with sequence similarity 173, member A	BC008155|Fam173a|214917|family with sequence similarity 173, member A
mm9_v1_chr7_+_99968402_99968500	0.417721	NHLH1,2.p2	AK017185|Rab30|75985|RAB30, member RAS oncogene family	AB232626|Rab30|75985|RAB30, member RAS oncogene family	AF399756|Rab30|75985|RAB30, member RAS oncogene family
mm9_v1_chr6_+_83068645_83068681	0.417392	NHLH1,2.p2	AK219549|Mogs|57377|mannosyl-oligosaccharide glucosidase
mm9_v1_chrX_-_101017152_101017262	0.417141	NHLH1,2.p2	AB265788|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2	BC080678|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2	BC096587|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm9_v1_chr18_-_24761954_24762029	0.416065	NHLH1,2.p2	BC055012|Slc39a6|106957|solute carrier family 39 (metal ion transporter), member 6
mm9_v1_chr19_+_16207728_16207780	0.415879	NHLH1,2.p2	M55412|Gnaq|14682|guanine nucleotide binding protein, alpha q polypeptide
mm9_v1_chr2_+_131036131_131036175	0.415013	NHLH1,2.p2	AK009634|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene	AK002807|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene	BC048399|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene	NM_027129|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene
mm9_v1_chr2_-_91023974_91024055	0.414859	NHLH1,2.p2	AY263980|Madd|228355|MAP-kinase activating death domain	AY263981|Madd|228355|MAP-kinase activating death domain	AY263982|Madd|228355|MAP-kinase activating death domain	AY263983|Madd|228355|MAP-kinase activating death domain	AY263984|Madd|228355|MAP-kinase activating death domain	AY263985|Madd|228355|MAP-kinase activating death domain	AY263986|Madd|228355|MAP-kinase activating death domain	AY263987|Madd|228355|MAP-kinase activating death domain	AY263988|Madd|228355|MAP-kinase activating death domain	AY263989|Madd|228355|MAP-kinase activating death domain	BC003255|Madd|228355|MAP-kinase activating death domain	NM_001177721|Madd|228355|MAP-kinase activating death domain	NM_001177722|Madd|228355|MAP-kinase activating death domain	NM_001177723|Madd|228355|MAP-kinase activating death domain	NM_001177724|Madd|228355|MAP-kinase activating death domain	NM_001177725|Madd|228355|MAP-kinase activating death domain	NM_001177726|Madd|228355|MAP-kinase activating death domain	NM_001177727|Madd|228355|MAP-kinase activating death domain	NM_001177728|Madd|228355|MAP-kinase activating death domain	NM_001177729|Madd|228355|MAP-kinase activating death domain
mm9_v1_chr3_-_108339375_108339439	0.41453	NHLH1,2.p2	AK139330|5330417C22Rik|229722|RIKEN cDNA 5330417C22 gene	NM_001033304|5330417C22Rik|229722|RIKEN cDNA 5330417C22 gene
mm9_v1_chr7_-_134160841_134160854	0.414516	NHLH1,2.p2	AK013840|2900092E17Rik|67278|RIKEN cDNA 2900092E17 gene
mm9_v1_chr2_-_104334728_104334748	0.414501	NHLH1,2.p2	AK140130|Hipk3|15259|homeodomain interacting protein kinase 3
mm9_v1_chr18_+_32416881_32416904	0.414385	NHLH1,2.p2	BC024446|Ercc3|13872|excision repair cross-complementing rodent repair deficiency, complementation group 3
mm9_v1_chr7_-_52071930_52072029	0.414229	NHLH1,2.p2	AF312938|Atf5|107503|activating transcription factor 5	AF375475|Atf5|107503|activating transcription factor 5	BC092068|Atf5|107503|activating transcription factor 5	AF310624|Atf5|107503|activating transcription factor 5	AK131939|Atf5|107503|activating transcription factor 5	AK146479|Atf5|107503|activating transcription factor 5	AK159624|Atf5|107503|activating transcription factor 5
mm9_v1_chr17_-_66426165_66426256	0.414145	NHLH1,2.p2	BC023046|Ankrd12|106585|ankyrin repeat domain 12
mm9_v1_chr5_-_118605455_118605474	0.412372	NHLH1,2.p2	AK031815|Fbxw8|231672|F-box and WD-40 domain protein 8	AK053794|Fbxw8|231672|F-box and WD-40 domain protein 8	NM_172721|Fbxw8|231672|F-box and WD-40 domain protein 8	AK134291|Fbxw8|231672|F-box and WD-40 domain protein 8
mm9_v1_chr10_+_36226801_36226831	0.412236	NHLH1,2.p2	BC079867|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5
mm9_v1_chrX_-_140367467_140367853	0.412058	NHLH1,2.p2	AY560329|Dcx|13193|doublecortin	AK048410|Dcx|13193|doublecortin	AF045547|Dcx|13193|doublecortin	AK164119|Dcx|13193|doublecortin	BC056391|Dcx|13193|doublecortin	AK049050|Dcx|13193|doublecortin	NM_001110222|Dcx|13193|doublecortin	BC057010|Dcx|13193|doublecortin	BC062974|Dcx|13193|doublecortin	AK014264|Dcx|13193|doublecortin	NM_001110223|Dcx|13193|doublecortin	NM_001110224|Dcx|13193|doublecortin	NM_010025|Dcx|13193|doublecortin	AB011678|Dcx|13193|doublecortin
mm9_v1_chr10_-_101953046_101953066	0.411507	NHLH1,2.p2	AF304160|Nts|67405|neurotensin	BC043024|Nts|67405|neurotensin	NM_024435|Nts|67405|neurotensin	AK017202|Nts|67405|neurotensin	AK017212|Nts|67405|neurotensin
mm9_v1_chr19_-_45734544_45734682	0.410954	NHLH1,2.p2	BC027031|Fbxw4|30838|F-box and WD-40 domain protein 4	AF176519|Fbxw4|30838|F-box and WD-40 domain protein 4	AB022163|Fbxw4|30838|F-box and WD-40 domain protein 4	NM_013907|Fbxw4|30838|F-box and WD-40 domain protein 4
mm9_v1_chr1_+_135142673_135142702	0.410929	NHLH1,2.p2	NM_001160268|Plekha6|240753|pleckstrin homology domain containing, family A member 6	NM_182930|Plekha6|240753|pleckstrin homology domain containing, family A member 6	BC054547|Plekha6|240753|pleckstrin homology domain containing, family A member 6	AK173074|Plekha6|240753|pleckstrin homology domain containing, family A member 6
mm9_v1_chr19_-_38199291_38199302	0.407933	NHLH1,2.p2	AK004839|Rbp4|19662|retinol binding protein 4, plasma	AK008765|Rbp4|19662|retinol binding protein 4, plasma	NM_011255|Rbp4|19662|retinol binding protein 4, plasma
mm9_v1_chr19_+_25484006_25484108	0.407169	NHLH1,2.p2	BC058673|Kank1|107351|KN motif and ankyrin repeat domains 1
mm9_v1_chr16_+_18877336_18877523	0.405829	NHLH1,2.p2	X92590|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	X75295|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	X99712|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm9_v1_chr5_+_144670857_144670916	0.4057	NHLH1,2.p2	AK146365|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	BC139774|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	BC066110|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	NM_008886|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	BC058189|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	AK014190|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	AK017847|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	AK034866|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	BC086637|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	BC141287|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	BC022179|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	AK083049|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	BC083502|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	BC110684|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)
mm9_v1_chr11_-_102417457_102417523	0.405656	NHLH1,2.p2	AK135410|Gpatch8|237943|G patch domain containing 8	NM_001159492|Gpatch8|237943|G patch domain containing 8
mm9_v1_chr12_-_36768992_36769002	0.405593	NHLH1,2.p2	AK008175|Tspan13|66109|tetraspanin 13
mm9_v1_chr11_-_99464621_99464621	0.405539	NHLH1,2.p2	NM_001127354|Gm11938|100041412|predicted gene 11938
mm9_v1_chr10_-_80134720_80134753	0.40553	NHLH1,2.p2	BC010256|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	NM_021462|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	Y11092|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2
mm9_v1_chr14_-_61665691_61665691	0.405002	NHLH1,2.p2	NM_013869|Tnfrsf19|29820|tumor necrosis factor receptor superfamily, member 19
mm9_v1_chr7_-_133521447_133521447	0.404466	NHLH1,2.p2	NM_023712|Spns1|73658|spinster homolog 1 (Drosophila)
mm9_v1_chr8_+_34710323_34710460	0.404432	NHLH1,2.p2	BC049594|Ppp2cb|19053|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	BC019161|Ppp2cb|19053|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	Z67746|Ppp2cb|19053|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	AK090311|Ppp2cb|19053|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform
mm9_v1_chr19_+_12040311_12040373	0.403786	NHLH1,2.p2	NM_001033174|Osbp|76303|oxysterol binding protein
mm9_v1_chr11_+_101107635_101107647	0.402177	NHLH1,2.p2	NM_019444|Ramp2|54409|receptor (calcitonin) activity modifying protein 2
mm9_v1_chr2_+_179759610_179759731	0.401518	NHLH1,2.p2	BC040823|Lsm14b|241846|LSM14 homolog B (SCD6, S. cerevisiae)	NM_177727|Lsm14b|241846|LSM14 homolog B (SCD6, S. cerevisiae)
mm9_v1_chr9_+_57369044_57369118	0.400533	NHLH1,2.p2	BC003831|Cox5a|12858|cytochrome c oxidase, subunit Va	BC034302|Cox5a|12858|cytochrome c oxidase, subunit Va	AK018723|Cox5a|12858|cytochrome c oxidase, subunit Va	X15963|Cox5a|12858|cytochrome c oxidase, subunit Va
mm9_v1_chr15_-_93167308_93167408	0.400145	NHLH1,2.p2	AK148634|Yaf2|67057|YY1 associated factor 2	AB100452|Yaf2|67057|YY1 associated factor 2	AB100453|Yaf2|67057|YY1 associated factor 2	AK005008|Yaf2|67057|YY1 associated factor 2	AK011702|Yaf2|67057|YY1 associated factor 2	NM_024189|Yaf2|67057|YY1 associated factor 2
mm9_v1_chr2_-_25080099_25080153	0.399964	NHLH1,2.p2	BC005547|Tubb2c|227613|tubulin, beta 2C
mm9_v1_chr2_-_84662710_84662808	0.399586	NHLH1,2.p2	AK003989|Smtnl1|68678|smoothelin-like 1	BC002317|Smtnl1|68678|smoothelin-like 1	NM_024230|Smtnl1|68678|smoothelin-like 1
mm9_v1_chr17_+_26389850_26389887	0.399268	NHLH1,2.p2	AK160293|Luc7l|66978|Luc7 homolog (S. cerevisiae)-like	NM_025881|Luc7l|66978|Luc7 homolog (S. cerevisiae)-like	NM_028190|Luc7l|66978|Luc7 homolog (S. cerevisiae)-like
mm9_v1_chr1_+_129999868_129999934	0.396741	NHLH1,2.p2	AK144098|R3hdm1|226412|R3H domain 1 (binds single-stranded nucleic acids)	NM_181750|R3hdm1|226412|R3H domain 1 (binds single-stranded nucleic acids)	AK141150|R3hdm1|226412|R3H domain 1 (binds single-stranded nucleic acids)	BC049181|R3hdm1|226412|R3H domain 1 (binds single-stranded nucleic acids)	AK051765|R3hdm1|226412|R3H domain 1 (binds single-stranded nucleic acids)
mm9_v1_chr16_+_30008752_30008861	0.39634	NHLH1,2.p2	AK085759|4632428C04Rik|100043102|RIKEN cDNA 4632428C04 gene
mm9_v1_chr16_-_93929811_93929811	0.39522	NHLH1,2.p2	NM_001165925|Cldn14|56173|claudin 14
mm9_v1_chr15_+_12754582_12754660	0.393898	NHLH1,2.p2	AK144147|Drosha|14000|drosha, ribonuclease type III	BC088999|Drosha|14000|drosha, ribonuclease type III	AK148640|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr5_-_92792262_92792321	0.392989	NHLH1,2.p2	AK040051|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	BC025903|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	AF136449|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	AF178672|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	AF179872|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	NM_019494|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	AK020750|Cxcl11|56066|chemokine (C-X-C motif) ligand 11
mm9_v1_chr5_-_23857421_23857489	0.392947	NHLH1,2.p2	AF012868|Kcnh2|16511|potassium voltage-gated channel, subfamily H (eag-related), member 2	NM_013569|Kcnh2|16511|potassium voltage-gated channel, subfamily H (eag-related), member 2
mm9_v1_chr11_-_116713532_116713613	0.392931	NHLH1,2.p2	AF250135|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr8_+_125589407_125589408	0.392156	NHLH1,2.p2	AK145540|Spg7|234847|spastic paraplegia 7 homolog (human)	AK171647|Spg7|234847|spastic paraplegia 7 homolog (human)	NM_153176|Spg7|234847|spastic paraplegia 7 homolog (human)
mm9_v1_chr4_-_108506131_108506262	0.391835	NHLH1,2.p2	BC024920|Btf3l4|70533|basic transcription factor 3-like 4	BC058282|Btf3l4|70533|basic transcription factor 3-like 4	AK011367|Btf3l4|70533|basic transcription factor 3-like 4	AK167256|Btf3l4|70533|basic transcription factor 3-like 4	BC138215|Btf3l4|70533|basic transcription factor 3-like 4	BC138216|Btf3l4|70533|basic transcription factor 3-like 4	BC024612|Btf3l4|70533|basic transcription factor 3-like 4	AK013120|Btf3l4|70533|basic transcription factor 3-like 4	AK076283|Btf3l4|70533|basic transcription factor 3-like 4	NM_027453|Btf3l4|70533|basic transcription factor 3-like 4	AK004239|Btf3l4|70533|basic transcription factor 3-like 4
mm9_v1_chr11_+_70833066_70833170	0.391454	NHLH1,2.p2	AK132010|Mis12|67139|MIS12 homolog (yeast)	AK010995|Mis12|67139|MIS12 homolog (yeast)	AK139957|Mis12|67139|MIS12 homolog (yeast)	NM_025993|Mis12|67139|MIS12 homolog (yeast)	AK154531|Mis12|67139|MIS12 homolog (yeast)
mm9_v1_chr7_-_134565529_134565578	0.390385	NHLH1,2.p2	AK013037|Zfp688|69234|zinc finger protein 688	BC027683|Zfp688|69234|zinc finger protein 688	NM_026999|Zfp688|69234|zinc finger protein 688	AK170857|Zfp688|69234|zinc finger protein 688
mm9_v1_chr7_+_25315666_25315756	0.388262	NHLH1,2.p2	NM_153134|Irgq|210146|immunity-related GTPase family, Q	BC056347|Irgq|210146|immunity-related GTPase family, Q	BC080294|Irgq|210146|immunity-related GTPase family, Q	AK051117|Irgq|210146|immunity-related GTPase family, Q
mm9_v1_chr2_-_32143495_32143593	0.386564	NHLH1,2.p2	AK018775|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	AK166608|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	AK041567|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	AK013517|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	BC021748|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	AK088274|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	AK039840|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	AK031907|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	AB597964|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	NM_175190|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene
mm9_v1_chr5_+_23907911_23908059	0.386048	NHLH1,2.p2	AK212771|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8
mm9_v1_chr18_+_78012506_78012506	0.385653	NHLH1,2.p2	NM_007505|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1
mm9_v1_chr5_+_122608385_122608573	0.384949	NHLH1,2.p2	D85137|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK153363|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	BC010613|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK205397|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK207485|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK215346|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK215748|Gm5601|434233|predicted pseudogene 5601	AK218771|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform
mm9_v1_chr7_-_87080143_87080213	0.384459	NHLH1,2.p2	BC031379|2610034B18Rik|70420|RIKEN cDNA 2610034B18 gene	AK051261|2610034B18Rik|70420|RIKEN cDNA 2610034B18 gene	NM_027420|2610034B18Rik|70420|RIKEN cDNA 2610034B18 gene	AK039350|2610034B18Rik|70420|RIKEN cDNA 2610034B18 gene	AK011654|2610034B18Rik|70420|RIKEN cDNA 2610034B18 gene	AK156013|2610034B18Rik|70420|RIKEN cDNA 2610034B18 gene
mm9_v1_chr16_-_3872273_3872373	0.384022	NHLH1,2.p2	AK016727|Zfp597|71063|zinc finger protein 597	NM_001033159|Zfp597|71063|zinc finger protein 597
mm9_v1_chr9_+_14080744_14080778	0.383709	NHLH1,2.p2	AK155398|Sesn3|75747|sestrin 3	NM_030261|Sesn3|75747|sestrin 3
mm9_v1_chr1_-_170362298_170362315	0.383237	NHLH1,2.p2	AK045252|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK144346|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK144446|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr6_-_137597775_137597813	0.383226	NHLH1,2.p2	L21671|Eps8|13860|epidermal growth factor receptor pathway substrate 8
mm9_v1_chr11_-_109472694_109472694	0.383111	NHLH1,2.p2	BC025560|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1
mm9_v1_chr8_+_26830480_26830683	0.382638	NHLH1,2.p2	NM_028000|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC023111|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	AK144593|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC089556|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC062173|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	AK009455|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC099489|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B
mm9_v1_chr10_-_42198203_42198370	0.382404	NHLH1,2.p2	AF520417|Lace1|215951|lactation elevated 1	AK170996|Lace1|215951|lactation elevated 1	BC089595|Lace1|215951|lactation elevated 1	AK044595|Lace1|215951|lactation elevated 1	NM_145743|Lace1|215951|lactation elevated 1
mm9_v1_chr17_-_46865894_46865924	0.382339	NHLH1,2.p2	AK007398|Gnmt|14711|glycine N-methyltransferase
mm9_v1_chr4_-_148800321_148800361	0.382268	NHLH1,2.p2	AK083409|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	AK029914|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm9_v1_chr5_-_135096716_135096886	0.382093	NHLH1,2.p2	BC023337|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr7_+_53172414_53172566	0.38183	NHLH1,2.p2	
mm9_v1_chr19_+_42245078_42245100	0.381413	NHLH1,2.p2	BC024801|Zfyve27|319740|zinc finger, FYVE domain containing 27	AK159065|Zfyve27|319740|zinc finger, FYVE domain containing 27	AK170237|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr7_+_106530044_106530083	0.381245	NHLH1,2.p2	BC082585|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5	NM_201352|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5
mm9_v1_chr8_-_4217275_4217311	0.381201	NHLH1,2.p2	BC068157|BC068157|73072|cDNA sequence BC068157	NM_207203|BC068157|73072|cDNA sequence BC068157
mm9_v1_chr7_-_53371419_53371532	0.381158	NHLH1,2.p2	AK085812|Abcc8|20927|ATP-binding cassette, sub-family C (CFTR/MRP), member 8
mm9_v1_chr8_-_67373807_67373950	0.381113	NHLH1,2.p2	AK220570|Klhl2|77113|kelch-like 2, Mayven (Drosophila)
mm9_v1_chr10_-_117147068_117147083	0.380355	NHLH1,2.p2	AK150530|Mdm2|17246|transformed mouse 3T3 cell double minute 2	AK152685|Mdm2|17246|transformed mouse 3T3 cell double minute 2	AK160069|Mdm2|17246|transformed mouse 3T3 cell double minute 2
mm9_v1_chr15_+_102864825_102864872	0.380337	NHLH1,2.p2	NM_013553|Hoxc4|15423|homeobox C4	X69019|Hoxc4|15423|homeobox C4	BC144778|Hoxc4|15423|homeobox C4	BC150664|Hoxc4|15423|homeobox C4
mm9_v1_chr12_-_112615921_112615933	0.379533	NHLH1,2.p2	NM_183016|Cdc42bpb|217866|CDC42 binding protein kinase beta
mm9_v1_chr11_+_3964839_3964931	0.37919	NHLH1,2.p2	NM_001029937|Sec14l3|380683|SEC14-like 3 (S. cerevisiae)	BC138982|Sec14l3|380683|SEC14-like 3 (S. cerevisiae)	BC138985|Sec14l3|380683|SEC14-like 3 (S. cerevisiae)	BC145485|Sec14l3|380683|SEC14-like 3 (S. cerevisiae)
mm9_v1_chr18_+_67624537_67624590	0.378795	NHLH1,2.p2	AK044163|Slmo1|225655|slowmo homolog 1 (Drosophila)	AK038905|Slmo1|225655|slowmo homolog 1 (Drosophila)	BC019561|Slmo1|225655|slowmo homolog 1 (Drosophila)
mm9_v1_chr10_-_80261226_80261370	0.376945	NHLH1,2.p2	AK088567|Plekhj1|78670|pleckstrin homology domain containing, family J member 1	NM_023900|Plekhj1|78670|pleckstrin homology domain containing, family J member 1
mm9_v1_chr5_-_143874629_143874716	0.376393	NHLH1,2.p2	AK089775|Rnf216|108086|ring finger protein 216	AK090306|Rnf216|108086|ring finger protein 216	AK147861|Rnf216|108086|ring finger protein 216	AK149741|Rnf216|108086|ring finger protein 216	AK154368|Rnf216|108086|ring finger protein 216	BC065066|Rnf216|108086|ring finger protein 216	NM_080561|Rnf216|108086|ring finger protein 216	NM_207110|Rnf216|108086|ring finger protein 216
mm9_v1_chr3_-_57105840_57105943	0.37633	NHLH1,2.p2	BC083073|Tm4sf1|17112|transmembrane 4 superfamily member 1	NM_008536|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK134603|Tm4sf1|17112|transmembrane 4 superfamily member 1
mm9_v1_chr1_-_64125352_64125397	0.376067	NHLH1,2.p2	AK086122|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	AK036514|Klf7|93691|Kruppel-like factor 7 (ubiquitous)
mm9_v1_chr4_+_107562417_107562508	0.375646	NHLH1,2.p2	AK050486|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	AK003575|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	AK160674|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	AK050533|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	AK002776|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	NM_028754|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	BC019215|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene
mm9_v1_chr3_-_36121094_36121237	0.375468	NHLH1,2.p2	AK142880|Qrfpr|229214|pyroglutamylated RFamide peptide receptor	AK043649|Qrfpr|229214|pyroglutamylated RFamide peptide receptor	AB109631|Qrfpr|229214|pyroglutamylated RFamide peptide receptor	BC096610|Qrfpr|229214|pyroglutamylated RFamide peptide receptor	NM_198192|Qrfpr|229214|pyroglutamylated RFamide peptide receptor	AK044246|Qrfpr|229214|pyroglutamylated RFamide peptide receptor	AK034431|Qrfpr|229214|pyroglutamylated RFamide peptide receptor
mm9_v1_chr13_-_76155834_76156159	0.37542	NHLH1,2.p2	AK029602|Rfesd|218341|Rieske (Fe-S) domain containing	AK163574|Rfesd|218341|Rieske (Fe-S) domain containing	AK040255|Rfesd|218341|Rieske (Fe-S) domain containing	AK083705|Rfesd|218341|Rieske (Fe-S) domain containing	NM_178916|Rfesd|218341|Rieske (Fe-S) domain containing	NM_001131068|Rfesd|218341|Rieske (Fe-S) domain containing	BC030381|Rfesd|218341|Rieske (Fe-S) domain containing	NM_001131069|Rfesd|218341|Rieske (Fe-S) domain containing
mm9_v1_chr2_+_118489015_118489059	0.375132	NHLH1,2.p2	AK158913|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6	AK158944|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6
mm9_v1_chr18_-_61560053_61560099	0.374176	NHLH1,2.p2	AK028464|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	BC150699|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	AK086111|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	AF453324|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	NM_133249|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta
mm9_v1_chr4_-_40895298_40895348	0.373353	NHLH1,2.p2	NM_001171739|Bag1|12017|BCL2-associated athanogene 1	NM_009736|Bag1|12017|BCL2-associated athanogene 1
mm9_v1_chr8_-_73363618_73363618	0.372913	NHLH1,2.p2	AK014582|Arrdc2|70807|arrestin domain containing 2	NM_027560|Arrdc2|70807|arrestin domain containing 2
mm9_v1_chr13_-_38620109_38620303	0.372895	NHLH1,2.p2	AK225012|Txndc5|105245|thioredoxin domain containing 5	AK225013|Txndc5|105245|thioredoxin domain containing 5	AK225015|Txndc5|105245|thioredoxin domain containing 5	AK225022|Txndc5|105245|thioredoxin domain containing 5	AK225016|Txndc5|105245|thioredoxin domain containing 5	BC024505|Txndc5|105245|thioredoxin domain containing 5	AY548112|Txndc5|105245|thioredoxin domain containing 5	BC046789|Txndc5|105245|thioredoxin domain containing 5	AK225020|Txndc5|105245|thioredoxin domain containing 5	AK225021|Txndc5|105245|thioredoxin domain containing 5	AK224933|Txndc5|105245|thioredoxin domain containing 5	AK224949|Txndc5|105245|thioredoxin domain containing 5	AK224950|Txndc5|105245|thioredoxin domain containing 5	AK224970|Txndc5|105245|thioredoxin domain containing 5	AK224973|Txndc5|105245|thioredoxin domain containing 5	AK224987|Txndc5|105245|thioredoxin domain containing 5	AK224974|Txndc5|105245|thioredoxin domain containing 5	AK224922|Txndc5|105245|thioredoxin domain containing 5	AK224926|Txndc5|105245|thioredoxin domain containing 5	AK224984|Txndc5|105245|thioredoxin domain containing 5	AK224930|Txndc5|105245|thioredoxin domain containing 5	AK224943|Txndc5|105245|thioredoxin domain containing 5	AK224948|Txndc5|105245|thioredoxin domain containing 5	AK224997|Txndc5|105245|thioredoxin domain containing 5	AK224998|Txndc5|105245|thioredoxin domain containing 5	AK224985|Txndc5|105245|thioredoxin domain containing 5	AK224995|Txndc5|105245|thioredoxin domain containing 5
mm9_v1_chr8_-_122159431_122159579	0.372721	NHLH1,2.p2	BC043936|Kcng4|66733|potassium voltage-gated channel, subfamily G, member 4	NM_025734|Kcng4|66733|potassium voltage-gated channel, subfamily G, member 4
mm9_v1_chr12_+_111685371_111685434	0.372622	NHLH1,2.p2	NM_001135001|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr11_-_75992950_75993004	0.372603	NHLH1,2.p2	AK049259|Vps53|68299|vacuolar protein sorting 53 (yeast)
mm9_v1_chr7_+_149135837_149135911	0.369087	NHLH1,2.p2	AK158574|Brsk2|75770|BR serine/threonine kinase 2
mm9_v1_chr8_-_72758275_72758364	0.368753	NHLH1,2.p2	BC048396|Armc6|76813|armadillo repeat containing 6	BC043070|Armc6|76813|armadillo repeat containing 6	BC055779|Armc6|76813|armadillo repeat containing 6	NM_133972|Armc6|76813|armadillo repeat containing 6	AK010815|Armc6|76813|armadillo repeat containing 6	AK081550|Armc6|76813|armadillo repeat containing 6
mm9_v1_chr9_-_14419410_14419443	0.368664	NHLH1,2.p2	NM_001081395|Amotl1|75723|angiomotin-like 1
mm9_v1_chr2_+_180332926_180333016	0.368336	NHLH1,2.p2	NM_009936|Col9a3|12841|collagen, type IX, alpha 3	AK030350|Col9a3|12841|collagen, type IX, alpha 3	AF349718|Col9a3|12841|collagen, type IX, alpha 3
mm9_v1_chr6_-_92164804_92164868	0.367761	NHLH1,2.p2	BC049106|Zfyve20|78287|zinc finger, FYVE domain containing 20	NM_030081|Zfyve20|78287|zinc finger, FYVE domain containing 20	AK019909|Zfyve20|78287|zinc finger, FYVE domain containing 20	BC017622|Zfyve20|78287|zinc finger, FYVE domain containing 20
mm9_v1_chr1_+_72871060_72871146	0.366533	NHLH1,2.p2	AK012703|Igfbp2|16008|insulin-like growth factor binding protein 2	BC012724|Igfbp2|16008|insulin-like growth factor binding protein 2	NM_008342|Igfbp2|16008|insulin-like growth factor binding protein 2	BC054473|Igfbp2|16008|insulin-like growth factor binding protein 2	X81580|Igfbp2|16008|insulin-like growth factor binding protein 2	AK011784|Igfbp2|16008|insulin-like growth factor binding protein 2	AK011790|Igfbp2|16008|insulin-like growth factor binding protein 2
mm9_v1_chr18_-_36942673_36942858	0.366371	NHLH1,2.p2	AK211613|Hars|15115|histidyl-tRNA synthetase	AK011685|Hars|15115|histidyl-tRNA synthetase	AK077437|Hars|15115|histidyl-tRNA synthetase	AK166826|Hars|15115|histidyl-tRNA synthetase	AK150081|Hars|15115|histidyl-tRNA synthetase	AK152329|Hars|15115|histidyl-tRNA synthetase	BC020088|Hars|15115|histidyl-tRNA synthetase	AK088824|Hars|15115|histidyl-tRNA synthetase	AK146922|Hars|15115|histidyl-tRNA synthetase	AK166892|Hars|15115|histidyl-tRNA synthetase	U39473|Hars|15115|histidyl-tRNA synthetase	NM_008214|Hars|15115|histidyl-tRNA synthetase
mm9_v1_chr19_-_5758532_5758585	0.365918	NHLH1,2.p2	
mm9_v1_chr10_-_126748757_126748841	0.3659	NHLH1,2.p2	NM_001003913|Mars|216443|methionine-tRNA synthetase	NM_001171582|Mars|216443|methionine-tRNA synthetase
mm9_v1_chr3_+_138190223_138190257	0.36569	NHLH1,2.p2	AK167097|Eif4e|13684|eukaryotic translation initiation factor 4E	M61731|Eif4e|13684|eukaryotic translation initiation factor 4E	AK082867|Eif4e|13684|eukaryotic translation initiation factor 4E	AK146757|Eif4e|13684|eukaryotic translation initiation factor 4E	BC010759|Eif4e|13684|eukaryotic translation initiation factor 4E	BC085087|Eif4e|13684|eukaryotic translation initiation factor 4E
mm9_v1_chr11_-_6505567_6505609	0.365457	NHLH1,2.p2	AB182283|Nacad|192950|NAC alpha domain containing	AK046108|Nacad|192950|NAC alpha domain containing
mm9_v1_chrX_+_46823626_46823742	0.365311	NHLH1,2.p2	NM_001081123|Arhgap36|75404|Rho GTPase activating protein 36	BC145645|Arhgap36|75404|Rho GTPase activating protein 36	AK048167|Arhgap36|75404|Rho GTPase activating protein 36
mm9_v1_chr9_-_110649625_110649648	0.365021	NHLH1,2.p2	BC013446|Pth1r|19228|parathyroid hormone 1 receptor	NM_011199|Pth1r|19228|parathyroid hormone 1 receptor
mm9_v1_chrX_-_34442878_34442893	0.364573	NHLH1,2.p2	AK042690|Nkrf|77286|NF-kappaB repressing factor	NM_029891|Nkrf|77286|NF-kappaB repressing factor
mm9_v1_chr8_+_96334452_96334737	0.364302	NHLH1,2.p2	AK160434|Gnao1|14681|guanine nucleotide binding protein, alpha O	AK035907|Gnao1|14681|guanine nucleotide binding protein, alpha O	NM_001113384|Gnao1|14681|guanine nucleotide binding protein, alpha O	NM_010308|Gnao1|14681|guanine nucleotide binding protein, alpha O
mm9_v1_chr5_+_111847185_111847185	0.364121	NHLH1,2.p2	NM_001081235|Mn1|433938|meningioma 1
mm9_v1_chr8_+_37157863_37157905	0.363702	NHLH1,2.p2	NM_172911|D8Ertd82e|244418|DNA segment, Chr 8, ERATO Doi 82, expressed
mm9_v1_chr9_-_40153864_40153891	0.363361	NHLH1,2.p2	BC070451|Gramd1b|235283|GRAM domain containing 1B
mm9_v1_chr18_-_46471470_46471581	0.362846	NHLH1,2.p2	NM_001160399|Ccdc112|240261|coiled-coil domain containing 112
mm9_v1_chrX_+_33868347_33868594	0.362521	NHLH1,2.p2	AK167341|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK016522|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK147751|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	NM_028894|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	BC120688|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	BC120690|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK030866|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3
mm9_v1_chr1_+_137732910_137732930	0.362299	NHLH1,2.p2	BC063753|Tnnt2|21956|troponin T2, cardiac
mm9_v1_chr10_-_17954752_17954810	0.362163	NHLH1,2.p2	AK028075|Ccdc28a|215814|coiled-coil domain containing 28A	BC013553|Ccdc28a|215814|coiled-coil domain containing 28A	BC027759|Ccdc28a|215814|coiled-coil domain containing 28A	AK148447|Ccdc28a|215814|coiled-coil domain containing 28A	NM_144820|Ccdc28a|215814|coiled-coil domain containing 28A
mm9_v1_chr8_-_122334083_122334199	0.362162	NHLH1,2.p2	AK008597|Cotl1|72042|coactosin-like 1 (Dictyostelium)
mm9_v1_chr3_-_90313339_90313430	0.36148	NHLH1,2.p2	AK004558|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	NM_023215|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AB041654|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK152492|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	BC066837|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	BC051939|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK005377|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK047914|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK132769|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK135914|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK010866|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene	AK077960|2500003M10Rik|66511|RIKEN cDNA 2500003M10 gene
mm9_v1_chr10_-_95026677_95026785	0.361128	NHLH1,2.p2	AK017075|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4	AK048062|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4
mm9_v1_chr2_+_32087125_32087136	0.361077	NHLH1,2.p2	AK161103|Prrc2b|227723|proline-rich coiled-coil 2B
mm9_v1_chr15_-_79845237_79845237	0.360437	NHLH1,2.p2	BC053430|Pdgfb|18591|platelet derived growth factor, B polypeptide	NM_011057|Pdgfb|18591|platelet derived growth factor, B polypeptide
mm9_v1_chr2_+_18594027_18594125	0.360109	NHLH1,2.p2	AK145999|Commd3|12238|COMM domain containing 3	AK145955|Commd3|12238|COMM domain containing 3	BC038077|Commd3|12238|COMM domain containing 3	BC048815|Commd3|12238|COMM domain containing 3	AK007318|Commd3|12238|COMM domain containing 3	AK041634|Commd3|12238|COMM domain containing 3	NM_147778|Commd3|12238|COMM domain containing 3
mm9_v1_chr5_+_114764949_114764949	0.36002	NHLH1,2.p2	NM_001164573|Myo1h|231646|myosin 1H
mm9_v1_chr5_-_114250360_114250424	0.359843	NHLH1,2.p2	BC025600|Tmem119|231633|transmembrane protein 119	NM_146162|Tmem119|231633|transmembrane protein 119	AK078473|Tmem119|231633|transmembrane protein 119	AK170712|Tmem119|231633|transmembrane protein 119	AK135223|Tmem119|231633|transmembrane protein 119
mm9_v1_chr4_+_140522412_140522429	0.359708	NHLH1,2.p2	DQ403000|Sdhb|67680|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)
mm9_v1_chr1_-_43884552_43884659	0.359285	NHLH1,2.p2	AF399958|Uxs1|67883|UDP-glucuronate decarboxylase 1	NM_026430|Uxs1|67883|UDP-glucuronate decarboxylase 1	AK005536|Uxs1|67883|UDP-glucuronate decarboxylase 1	BC037049|Uxs1|67883|UDP-glucuronate decarboxylase 1	AK075806|Uxs1|67883|UDP-glucuronate decarboxylase 1	AK152376|Uxs1|67883|UDP-glucuronate decarboxylase 1	AK076166|Uxs1|67883|UDP-glucuronate decarboxylase 1
mm9_v1_chr5_+_20388263_20388316	0.359216	NHLH1,2.p2	NM_177601|Tmem60|212090|transmembrane protein 60	AK041036|Tmem60|212090|transmembrane protein 60
mm9_v1_chr11_+_46385014_46385159	0.358902	NHLH1,2.p2	NM_001025435|BC053393|407814|cDNA sequence BC053393	BC052651|BC053393|407814|cDNA sequence BC053393	AK166706|BC053393|407814|cDNA sequence BC053393	AK166838|BC053393|407814|cDNA sequence BC053393	AK145729|BC053393|407814|cDNA sequence BC053393	AK140690|BC053393|407814|cDNA sequence BC053393
mm9_v1_chr13_+_38436987_38437005	0.358877	NHLH1,2.p2	AK041210|Bmp6|12161|bone morphogenetic protein 6
mm9_v1_chr8_-_23704176_23704284	0.358696	NHLH1,2.p2	BC004743|Vdac3|22335|voltage-dependent anion channel 3	BC089336|Vdac3|22335|voltage-dependent anion channel 3	AK161283|Vdac3|22335|voltage-dependent anion channel 3	AK083785|Vdac3|22335|voltage-dependent anion channel 3	AK150828|Vdac3|22335|voltage-dependent anion channel 3	AK169228|Vdac3|22335|voltage-dependent anion channel 3	AK150741|Vdac3|22335|voltage-dependent anion channel 3	AK159431|Vdac3|22335|voltage-dependent anion channel 3	AK167781|Vdac3|22335|voltage-dependent anion channel 3	AK168815|Vdac3|22335|voltage-dependent anion channel 3	U30839|Vdac3|22335|voltage-dependent anion channel 3	AK002296|Vdac3|22335|voltage-dependent anion channel 3	AK146957|Vdac3|22335|voltage-dependent anion channel 3	AK169099|Vdac3|22335|voltage-dependent anion channel 3	NM_001198998|Vdac3|22335|voltage-dependent anion channel 3	NM_011696|Vdac3|22335|voltage-dependent anion channel 3
mm9_v1_chr1_-_33871349_33871443	0.358409	NHLH1,2.p2	AK015797|Zfp451|98403|zinc finger protein 451
mm9_v1_chr8_-_23587100_23587150	0.357536	NHLH1,2.p2	AK131902|AI316807|102032|expressed sequence AI316807	AK140957|AI316807|102032|expressed sequence AI316807
mm9_v1_chr10_+_79516232_79516445	0.357348	NHLH1,2.p2	D87896|Gpx4|625249|glutathione peroxidase 4	NM_008162|Gpx4|625249|glutathione peroxidase 4	AF045768|Gpx4|625249|glutathione peroxidase 4	AK167881|Gpx4|625249|glutathione peroxidase 4	AK006441|Gpx4|625249|glutathione peroxidase 4	AK160389|Gpx4|625249|glutathione peroxidase 4	AK168027|Gpx4|625249|glutathione peroxidase 4	AF045769|Gpx4|625249|glutathione peroxidase 4	AK160509|Gpx4|625249|glutathione peroxidase 4	BC083137|Gpx4|625249|glutathione peroxidase 4
mm9_v1_chr19_-_45080871_45080957	0.357201	NHLH1,2.p2	BC027676|Mrpl43|94067|mitochondrial ribosomal protein L43	BC065812|Mrpl43|94067|mitochondrial ribosomal protein L43	AK076204|Mrpl43|94067|mitochondrial ribosomal protein L43	AB049657|Mrpl43|94067|mitochondrial ribosomal protein L43	AK015357|Mrpl43|94067|mitochondrial ribosomal protein L43	BC048733|Mrpl43|94067|mitochondrial ribosomal protein L43	NM_053164|Mrpl43|94067|mitochondrial ribosomal protein L43
mm9_v1_chr7_-_134028480_134028480	0.357066	NHLH1,2.p2	NM_001163774|Taok2|381921|TAO kinase 2	NM_001163775|Taok2|381921|TAO kinase 2
mm9_v1_chr7_+_149646740_149646803	0.356849	NHLH1,2.p2	BC044736|Lsp1|16985|lymphocyte specific 1	AK003081|Lsp1|16985|lymphocyte specific 1	M89956|Lsp1|16985|lymphocyte specific 1	NM_001136071|Lsp1|16985|lymphocyte specific 1	S74179|Lsp1|16985|lymphocyte specific 1
mm9_v1_chrX_-_20194364_20194382	0.356409	NHLH1,2.p2	BC096047|Ndufb11|104130|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11	Y08702|Ndufb11|104130|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11
mm9_v1_chr8_-_73380865_73380911	0.355118	NHLH1,2.p2	AF357239|Kcnn1|84036|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	AK043611|Kcnn1|84036|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	AK041033|Kcnn1|84036|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	NM_032397|Kcnn1|84036|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	AF303463|Kcnn1|84036|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
mm9_v1_chr3_-_92474213_92474238	0.354984	NHLH1,2.p2	BC062142|Lce1a2|73722|late cornified envelope 1A2	BC100540|Lce1a2|73722|late cornified envelope 1A2	BC147122|Lce1a2|73722|late cornified envelope 1A2	AK003412|Lce1a2|73722|late cornified envelope 1A2	NM_028625|Lce1a2|73722|late cornified envelope 1A2
mm9_v1_chr16_+_18248964_18249010	0.35481	NHLH1,2.p2	AK017819|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK134368|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	NM_001080999|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	NM_001081000|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	NM_001195205|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)
mm9_v1_chr7_+_104599843_104599843	0.354725	NHLH1,2.p2	NM_001136235|Kctd14|233529|potassium channel tetramerisation domain containing 14
mm9_v1_chr13_-_43576328_43576357	0.354126	NHLH1,2.p2	AF006465|Ranbp9|56705|RAN binding protein 9	NM_019930|Ranbp9|56705|RAN binding protein 9
mm9_v1_chr5_-_144031666_144031702	0.353053	NHLH1,2.p2	NM_017467|Zfp316|54201|zinc finger protein 316
mm9_v1_chr3_-_94863548_94863564	0.352792	NHLH1,2.p2	AK052310|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm9_v1_chr11_-_71949346_71949391	0.35242	NHLH1,2.p2	AK147444|Pitpnm3|327958|PITPNM family member 3	NM_001024927|Pitpnm3|327958|PITPNM family member 3	NM_001081641|Pitpnm3|327958|PITPNM family member 3
mm9_v1_chr10_-_112365976_112366087	0.350911	NHLH1,2.p2	AK014824|Atxn7l3b|382423|ataxin 7-like 3B	BC058561|Atxn7l3b|382423|ataxin 7-like 3B	BC047210|Atxn7l3b|382423|ataxin 7-like 3B	BC079579|Atxn7l3b|382423|ataxin 7-like 3B	BC094390|Atxn7l3b|382423|ataxin 7-like 3B	BC030168|Atxn7l3b|382423|ataxin 7-like 3B	AK003631|Atxn7l3b|382423|ataxin 7-like 3B	AK150316|Atxn7l3b|382423|ataxin 7-like 3B	AK135540|Atxn7l3b|382423|ataxin 7-like 3B	AK011696|Atxn7l3b|382423|ataxin 7-like 3B	AK009409|Atxn7l3b|382423|ataxin 7-like 3B	NM_001033474|Atxn7l3b|382423|ataxin 7-like 3B
mm9_v1_chr13_-_102538106_102538184	0.349521	NHLH1,2.p2	M60651|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	U50413|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	BC026146|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	AK160493|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	AK171366|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	NM_001077495|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chr18_+_38409902_38409977	0.349399	NHLH1,2.p2	NM_024179|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK035876|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK002437|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK171837|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK079423|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	BC002117|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK141675|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK172900|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene
mm9_v1_chr2_+_127250916_127250939	0.349128	NHLH1,2.p2	AB259571|Gpat2|215456|glycerol-3-phosphate acyltransferase 2, mitochondrial	AK131154|Gpat2|215456|glycerol-3-phosphate acyltransferase 2, mitochondrial	NM_001081089|Gpat2|215456|glycerol-3-phosphate acyltransferase 2, mitochondrial	BC113165|Gpat2|215456|glycerol-3-phosphate acyltransferase 2, mitochondrial	BC113776|Gpat2|215456|glycerol-3-phosphate acyltransferase 2, mitochondrial
mm9_v1_chr19_+_32463705_32463724	0.34816	NHLH1,2.p2	AK035700|2700046G09Rik|67188|RIKEN cDNA 2700046G09 gene	AK012385|2700046G09Rik|67188|RIKEN cDNA 2700046G09 gene	AK019229|2700046G09Rik|67188|RIKEN cDNA 2700046G09 gene
mm9_v1_chr8_+_124114323_124114400	0.348116	NHLH1,2.p2	AF255953|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK132329|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	BC068180|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK002795|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK003558|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK012604|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK003106|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK003205|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	NM_026160|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK151614|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	BC028812|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	BC110308|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	BC086774|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta
mm9_v1_chr9_+_120401824_120401871	0.34725	NHLH1,2.p2	BC030319|Eif1b|68969|eukaryotic translation initiation factor 1B
mm9_v1_chr7_-_16872094_16872145	0.34588	NHLH1,2.p2	AK134892|Ccdc9|243846|coiled-coil domain containing 9	NM_001136471|Ccdc9|243846|coiled-coil domain containing 9
mm9_v1_chr17_-_27772162_27772222	0.343726	NHLH1,2.p2	BC089323|Rps10|67097|ribosomal protein S10	BC003853|Rps10|67097|ribosomal protein S10	BC019725|Rps10|67097|ribosomal protein S10	AK011065|Rps10|67097|ribosomal protein S10	AK145441|Rps10|67097|ribosomal protein S10	AK151703|Rps10|67097|ribosomal protein S10	AK157104|Rps10|67097|ribosomal protein S10	AK002558|Rps10|67097|ribosomal protein S10	AK008797|Rps10|67097|ribosomal protein S10	AK136533|Rps10|67097|ribosomal protein S10	AK150803|Rps10|67097|ribosomal protein S10	BC086919|Rps10|67097|ribosomal protein S10	AK020219|Rps10|67097|ribosomal protein S10	NM_025963|Rps10|67097|ribosomal protein S10
mm9_v1_chr5_+_93522512_93522577	0.342872	NHLH1,2.p2	AK028475|Sept11|52398|septin 11	BC031456|Sept11|52398|septin 11
mm9_v1_chr19_+_25127069_25127095	0.341504	NHLH1,2.p2	AK018051|Dock8|76088|dedicator of cytokinesis 8	AK038285|Dock8|76088|dedicator of cytokinesis 8
mm9_v1_chr8_+_55635683_55635717	0.341356	NHLH1,2.p2	AK003770|Asb5|76294|ankyrin repeat and SOCs box-containing 5	NM_029569|Asb5|76294|ankyrin repeat and SOCs box-containing 5	BC120851|Asb5|76294|ankyrin repeat and SOCs box-containing 5	BC132007|Asb5|76294|ankyrin repeat and SOCs box-containing 5
mm9_v1_chr10_-_77472501_77472567	0.341215	NHLH1,2.p2	NM_008826|Pfkl|18641|phosphofructokinase, liver, B-type
mm9_v1_chr1_+_6204729_6204756	0.340286	NHLH1,2.p2	AB050017|Rb1cc1|12421|RB1-inducible coiled-coil 1	AB070619|Rb1cc1|12421|RB1-inducible coiled-coil 1	NM_009826|Rb1cc1|12421|RB1-inducible coiled-coil 1	AK020027|Rb1cc1|12421|RB1-inducible coiled-coil 1
mm9_v1_chr17_-_45739015_45739052	0.340036	NHLH1,2.p2	DQ190000|Gm7325|653016|predicted gene 7325	NM_001177468|Gm7325|653016|predicted gene 7325	NM_001177469|Gm7325|653016|predicted gene 7325
mm9_v1_chr14_-_71026793_71026880	0.339881	NHLH1,2.p2	AK155927|Epb4.9|13829|erythrocyte protein band 4.9	AK143840|Epb4.9|13829|erythrocyte protein band 4.9	AK165294|Epb4.9|13829|erythrocyte protein band 4.9	AK165204|Epb4.9|13829|erythrocyte protein band 4.9
mm9_v1_chr15_-_31460752_31460820	0.339433	NHLH1,2.p2	AK132461|March6|223455|membrane-associated ring finger (C3HC4) 6	AK089827|March6|223455|membrane-associated ring finger (C3HC4) 6	NM_172606|March6|223455|membrane-associated ring finger (C3HC4) 6
mm9_v1_chr14_-_56649331_56649331	0.339201	NHLH1,2.p2	AY007568|Mcpt9|17232|mast cell protease 9	NM_010782|Mcpt9|17232|mast cell protease 9
mm9_v1_chr19_-_40686713_40686746	0.339119	NHLH1,2.p2	DQ278871|Tctn3|67590|tectonic family member 3
mm9_v1_chr16_+_72663393_72663448	0.337829	NHLH1,2.p2	AK138485|Robo1|19876|roundabout homolog 1 (Drosophila)	AK143001|Robo1|19876|roundabout homolog 1 (Drosophila)	NM_019413|Robo1|19876|roundabout homolog 1 (Drosophila)	AK032752|Robo1|19876|roundabout homolog 1 (Drosophila)	AK142047|Robo1|19876|roundabout homolog 1 (Drosophila)
mm9_v1_chr12_-_88488851_88488917	0.337054	NHLH1,2.p2	AK076813|Pomt2|217734|protein-O-mannosyltransferase 2	AY090481|Pomt2|217734|protein-O-mannosyltransferase 2	NM_153415|Pomt2|217734|protein-O-mannosyltransferase 2	AK085703|Pomt2|217734|protein-O-mannosyltransferase 2
mm9_v1_chr2_+_24132788_24133018	0.337037	NHLH1,2.p2	AK008977|Il1f5|54450|interleukin 1 family, member 5 (delta)	AK009741|Il1f5|54450|interleukin 1 family, member 5 (delta)	AK076547|Il1f5|54450|interleukin 1 family, member 5 (delta)	NM_019451|Il1f5|54450|interleukin 1 family, member 5 (delta)	AK010020|Il1f5|54450|interleukin 1 family, member 5 (delta)	AF200495|Il1f5|54450|interleukin 1 family, member 5 (delta)	AJ250429|Il1f5|54450|interleukin 1 family, member 5 (delta)	BC132600|Il1f5|54450|interleukin 1 family, member 5 (delta)	BC132602|Il1f5|54450|interleukin 1 family, member 5 (delta)	AF230378|Il1f5|54450|interleukin 1 family, member 5 (delta)
mm9_v1_chr17_+_26698421_26698560	0.336299	NHLH1,2.p2	BC005516|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	NM_026170|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	AK173123|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	AK003239|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	AK088157|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	AK004629|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	AK151239|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	AK084385|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	BC083144|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	AB093571|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	CT010230|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
mm9_v1_chr2_+_155343804_155343878	0.335663	NHLH1,2.p2	AK053877|Acss2|60525|acyl-CoA synthetase short-chain family member 2	AK086921|Acss2|60525|acyl-CoA synthetase short-chain family member 2	AK041520|Acss2|60525|acyl-CoA synthetase short-chain family member 2	AK029014|Acss2|60525|acyl-CoA synthetase short-chain family member 2	AF216873|Acss2|60525|acyl-CoA synthetase short-chain family member 2	BC040790|Acss2|60525|acyl-CoA synthetase short-chain family member 2
mm9_v1_chr4_-_148800731_148800857	0.335461	NHLH1,2.p2	AK016689|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	NM_022022|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	AF260926|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm9_v1_chr15_-_82991286_82991340	0.33429	NHLH1,2.p2	AK178355|Cyb5r3|109754|cytochrome b5 reductase 3	AK181262|Cyb5r3|109754|cytochrome b5 reductase 3	AK183532|Cyb5r3|109754|cytochrome b5 reductase 3	AK187743|Cyb5r3|109754|cytochrome b5 reductase 3	AK190014|Cyb5r3|109754|cytochrome b5 reductase 3	AK211940|Cyb5r3|109754|cytochrome b5 reductase 3	AK211950|Cyb5r3|109754|cytochrome b5 reductase 3	AK213922|Cyb5r3|109754|cytochrome b5 reductase 3
mm9_v1_chr7_-_19734531_19734614	0.333591	NHLH1,2.p2	AK035587|Qpctl|67369|glutaminyl-peptide cyclotransferase-like	NM_026111|Qpctl|67369|glutaminyl-peptide cyclotransferase-like	AK045687|Qpctl|67369|glutaminyl-peptide cyclotransferase-like	BC058181|Qpctl|67369|glutaminyl-peptide cyclotransferase-like	AK007701|Qpctl|67369|glutaminyl-peptide cyclotransferase-like	AK007555|Qpctl|67369|glutaminyl-peptide cyclotransferase-like
mm9_v1_chr2_+_155969888_155969997	0.333451	NHLH1,2.p2	NM_001164216|Romo1|67067|reactive oxygen species modulator 1	AK008300|Romo1|67067|reactive oxygen species modulator 1	NM_001164215|Romo1|67067|reactive oxygen species modulator 1	NM_001164217|Romo1|67067|reactive oxygen species modulator 1	AK003488|Romo1|67067|reactive oxygen species modulator 1	BC028749|Romo1|67067|reactive oxygen species modulator 1
mm9_v1_chr11_-_20012852_20012951	0.333188	NHLH1,2.p2	BC047530|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)	AK088216|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)	AK163217|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)	AK032832|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)	AK033014|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)	BC027799|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)
mm9_v1_chr10_+_127707555_127707756	0.332926	NHLH1,2.p2	AK149924|Stat2|20847|signal transducer and activator of transcription 2	AK150070|Stat2|20847|signal transducer and activator of transcription 2	AK149838|Stat2|20847|signal transducer and activator of transcription 2	AF187231|Stat2|20847|signal transducer and activator of transcription 2	AF206162|Stat2|20847|signal transducer and activator of transcription 2	NM_019963|Stat2|20847|signal transducer and activator of transcription 2	AF088862|Stat2|20847|signal transducer and activator of transcription 2
mm9_v1_chr8_-_108020769_108020996	0.332519	NHLH1,2.p2	AK038593|Zdhhc1|70796|zinc finger, DHHC domain containing 1	NM_175160|Zdhhc1|70796|zinc finger, DHHC domain containing 1
mm9_v1_chr2_+_179992080_179992096	0.331585	NHLH1,2.p2	AK010610|Rps21|66481|ribosomal protein S21	NM_025587|Rps21|66481|ribosomal protein S21
mm9_v1_chr4_+_130125682_130125774	0.33155	NHLH1,2.p2	NM_025998|Nkain1|67149|Na+/K+ transporting ATPase interacting 1	AK011850|Nkain1|67149|Na+/K+ transporting ATPase interacting 1	BC116391|Nkain1|67149|Na+/K+ transporting ATPase interacting 1	BC116392|Nkain1|67149|Na+/K+ transporting ATPase interacting 1
mm9_v1_chr7_-_26022753_26022882	0.33129	NHLH1,2.p2	NM_001031667|Gsk3a|606496|glycogen synthase kinase 3 alpha
mm9_v1_chr16_-_85862579_85862641	0.330265	NHLH1,2.p2	AK046558|Adamts5|23794|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	AK164560|Adamts5|23794|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm9_v1_chr7_-_91558468_91558528	0.330098	NHLH1,2.p2	BC054546|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2	NM_007488|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2
mm9_v1_chr11_-_21271158_21271203	0.329979	NHLH1,2.p2	AK213550|Ugp2|216558|UDP-glucose pyrophosphorylase 2	BC025585|Ugp2|216558|UDP-glucose pyrophosphorylase 2
mm9_v1_chr4_+_49072327_49072465	0.328937	NHLH1,2.p2	AK053451|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AK087514|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AY345342|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	NM_178756|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	BC096762|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AK047614|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AK043762|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene
mm9_v1_chr6_+_40914752_40914770	0.32886	NHLH1,2.p2	BC132243|1810009J06Rik|73626|RIKEN cDNA 1810009J06 gene	BC132245|1810009J06Rik|73626|RIKEN cDNA 1810009J06 gene	AK007406|1810009J06Rik|73626|RIKEN cDNA 1810009J06 gene	NM_023707|1810009J06Rik|73626|RIKEN cDNA 1810009J06 gene
mm9_v1_chr19_-_40686672_40686686	0.328145	NHLH1,2.p2	BC080805|Tctn3|67590|tectonic family member 3
mm9_v1_chr11_+_117848190_117848253	0.327368	NHLH1,2.p2	AK163967|Pgs1|74451|phosphatidylglycerophosphate synthase 1	AK153001|Pgs1|74451|phosphatidylglycerophosphate synthase 1
mm9_v1_chr3_+_88357635_88357640	0.326537	NHLH1,2.p2	AB040050|Ubqln4|94232|ubiquilin 4	NM_033526|Ubqln4|94232|ubiquilin 4
mm9_v1_chr2_-_127410404_127410441	0.326399	NHLH1,2.p2	BC052876|Zfp661|72180|zinc finger protein 661	AK033122|Zfp661|72180|zinc finger protein 661	NM_001111029|Zfp661|72180|zinc finger protein 661	NM_028141|Zfp661|72180|zinc finger protein 661
mm9_v1_chr17_-_87665173_87665209	0.326005	NHLH1,2.p2	BC003996|Mcfd2|193813|multiple coagulation factor deficiency 2
mm9_v1_chr15_-_89204248_89204287	0.325778	NHLH1,2.p2	BC019554|Sco2|100126824|SCO cytochrome oxidase deficient homolog 2 (yeast)	NM_001111288|Sco2|100126824|SCO cytochrome oxidase deficient homolog 2 (yeast)	AK013765|Sco2|100126824|SCO cytochrome oxidase deficient homolog 2 (yeast)
mm9_v1_chr1_-_123224254_123224280	0.325738	NHLH1,2.p2	AK050394|Insig2|72999|insulin induced gene 2
mm9_v1_chr9_-_115152895_115153139	0.325449	NHLH1,2.p2	AK213927|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm9_v1_chr5_-_92392073_92392174	0.325155	NHLH1,2.p2	BC057143|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	NM_026557|Rchy1|68098|ring finger and CHY zinc finger domain containing 1
mm9_v1_chr4_+_116549978_116550006	0.325112	NHLH1,2.p2	AK016928|Zswim5|74464|zinc finger, SWIM domain containing 5	AK122519|Zswim5|74464|zinc finger, SWIM domain containing 5	NM_001029912|Zswim5|74464|zinc finger, SWIM domain containing 5
mm9_v1_chr3_-_33042147_33042183	0.323687	NHLH1,2.p2	AK044552|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr18_+_31963757_31963829	0.323679	NHLH1,2.p2	BC030076|Wdr33|74320|WD repeat domain 33	BC011156|Wdr33|74320|WD repeat domain 33	BC064745|Wdr33|74320|WD repeat domain 33
mm9_v1_chr5_-_3802874_3803076	0.323542	NHLH1,2.p2	BC145510|Ankib1|70797|ankyrin repeat and IBR domain containing 1	BC145511|Ankib1|70797|ankyrin repeat and IBR domain containing 1	BC150792|Ankib1|70797|ankyrin repeat and IBR domain containing 1	AK129343|Ankib1|70797|ankyrin repeat and IBR domain containing 1
mm9_v1_chr10_+_75031386_75031408	0.323253	NHLH1,2.p2	L17334|Ggt1|14598|gamma-glutamyltransferase 1	AK079235|Ggt1|14598|gamma-glutamyltransferase 1
mm9_v1_chr15_+_33012972_33013051	0.321322	NHLH1,2.p2	AF009513|Pgcp|54381|plasma glutamate carboxypeptidase	AK152145|Pgcp|54381|plasma glutamate carboxypeptidase	AK152139|Pgcp|54381|plasma glutamate carboxypeptidase	AK054422|Pgcp|54381|plasma glutamate carboxypeptidase	AK137164|Pgcp|54381|plasma glutamate carboxypeptidase	AK154361|Pgcp|54381|plasma glutamate carboxypeptidase	AK032972|Pgcp|54381|plasma glutamate carboxypeptidase	BC037067|Pgcp|54381|plasma glutamate carboxypeptidase
mm9_v1_chr11_+_77845814_77845821	0.319204	NHLH1,2.p2	NM_183286|Dhrs13|70451|dehydrogenase/reductase (SDR family) member 13
mm9_v1_chr3_-_108003697_108003757	0.318912	NHLH1,2.p2	AK087683|Cyb561d1|72023|cytochrome b-561 domain containing 1	BC060107|Cyb561d1|72023|cytochrome b-561 domain containing 1	BC137590|Cyb561d1|72023|cytochrome b-561 domain containing 1	NM_001081320|Cyb561d1|72023|cytochrome b-561 domain containing 1	NM_028061|Cyb561d1|72023|cytochrome b-561 domain containing 1	AK164441|Cyb561d1|72023|cytochrome b-561 domain containing 1
mm9_v1_chr1_-_133421746_133421916	0.317827	NHLH1,2.p2	BC158055|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2	BC151081|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2	BC151082|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2	BC172152|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2
mm9_v1_chr8_+_125589362_125589405	0.316325	NHLH1,2.p2	AF512565|Spg7|234847|spastic paraplegia 7 homolog (human)
mm9_v1_chr15_-_34608840_34608966	0.316089	NHLH1,2.p2	AK079085|Nipal2|223473|NIPA-like domain containing 2	BC030399|Nipal2|223473|NIPA-like domain containing 2
mm9_v1_chr15_+_85709732_85709805	0.315606	NHLH1,2.p2	AK043532|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	AK044059|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	AY349617|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	AK005541|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	AK041084|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	NM_028063|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	BC051548|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	BC061026|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	AK003480|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
mm9_v1_chr15_+_88692581_88692634	0.314271	NHLH1,2.p2	AK168014|Pim3|223775|proviral integration site 3	BC017621|Pim3|223775|proviral integration site 3	NM_145478|Pim3|223775|proviral integration site 3
mm9_v1_chr5_-_34125322_34125413	0.314044	NHLH1,2.p2	BC023862|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AF061026|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC061690|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	NM_019694|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC046326|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC055865|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AB041582|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC061115|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AK133849|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1
mm9_v1_chr11_-_74739449_74739483	0.312538	NHLH1,2.p2	AK157122|Srr|27364|serine racemase
mm9_v1_chr1_-_73062445_73062472	0.311271	NHLH1,2.p2	X12521|Tnp1|21958|transition protein 1	AK006495|Tnp1|21958|transition protein 1	BC061170|Tnp1|21958|transition protein 1	BC048494|Tnp1|21958|transition protein 1	NM_009407|Tnp1|21958|transition protein 1
mm9_v1_chr11_+_70658261_70658270	0.310777	NHLH1,2.p2	AK134587|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	NM_019400|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1
mm9_v1_chr3_-_104024291_104024328	0.310549	NHLH1,2.p2	AK018328|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3	NM_001159354|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3	NM_133853|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3
mm9_v1_chr11_-_116274264_116274379	0.309418	NHLH1,2.p2	AK011693|Rnf157|217340|ring finger protein 157	NM_027258|Rnf157|217340|ring finger protein 157
mm9_v1_chr4_-_147525932_147526290	0.308539	NHLH1,2.p2	AF176526|Fbxo6|50762|F-box protein 6	AK144715|Fbxo6|50762|F-box protein 6	AK150612|Fbxo6|50762|F-box protein 6	AK165867|Fbxo6|50762|F-box protein 6	NM_001163704|Fbxo6|50762|F-box protein 6	NM_001163705|Fbxo6|50762|F-box protein 6	NM_015797|Fbxo6|50762|F-box protein 6	AK002840|Fbxo6|50762|F-box protein 6	AK170743|Fbxo6|50762|F-box protein 6	AK171483|Fbxo6|50762|F-box protein 6	NM_001163706|Fbxo6|50762|F-box protein 6	NM_001163707|Fbxo6|50762|F-box protein 6
mm9_v1_chr8_+_125589411_125589473	0.307613	NHLH1,2.p2	BC051051|Spg7|234847|spastic paraplegia 7 homolog (human)
mm9_v1_chr11_-_98300224_98300319	0.307535	NHLH1,2.p2	AK002959|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	AK009922|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	AK007795|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	AK041314|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	BC021589|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	NM_025559|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene
mm9_v1_chr7_+_51024469_51024469	0.307504	NHLH1,2.p2	BC147442|Klk12|69511|kallikrein related-peptidase 12	BC147463|Klk12|69511|kallikrein related-peptidase 12	NM_027097|Klk12|69511|kallikrein related-peptidase 12
mm9_v1_chr15_+_81296745_81296851	0.30738	NHLH1,2.p2	NM_019712|Rbx1|56438|ring-box 1	AK004114|Rbx1|56438|ring-box 1	AK005127|Rbx1|56438|ring-box 1	AK003159|Rbx1|56438|ring-box 1	AF140599|Rbx1|56438|ring-box 1	AK152012|Rbx1|56438|ring-box 1	AK159571|Rbx1|56438|ring-box 1	BC027396|Rbx1|56438|ring-box 1	BC051473|Rbx1|56438|ring-box 1	BC056992|Rbx1|56438|ring-box 1	AK182752|Rbx1|56438|ring-box 1	AK183716|Rbx1|56438|ring-box 1
mm9_v1_chr4_+_151653120_151653375	0.30729	NHLH1,2.p2	BC037650|Gpr153|100129|G protein-coupled receptor 153	BC029098|Gpr153|100129|G protein-coupled receptor 153	AY255610|Gpr153|100129|G protein-coupled receptor 153
mm9_v1_chr11_+_101286405_101286406	0.307213	NHLH1,2.p2	AK157156|Rundc1|217201|RUN domain containing 1
mm9_v1_chr6_-_149050067_149050107	0.306927	NHLH1,2.p2	AK135015|Dennd5b|320560|DENN/MADD domain containing 5B	AK038858|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr12_+_75398460_75398460	0.306207	NHLH1,2.p2	NM_198866|Dbpht2|386753|DNA binding protein with his-thr domain
mm9_v1_chr17_+_8503966_8504073	0.305452	NHLH1,2.p2	BC091770|Sft2d1|106489|SFT2 domain containing 1	NM_134114|Sft2d1|106489|SFT2 domain containing 1	BC006777|Sft2d1|106489|SFT2 domain containing 1	AK171776|Sft2d1|106489|SFT2 domain containing 1	AK151338|Sft2d1|106489|SFT2 domain containing 1	BC130232|Sft2d1|106489|SFT2 domain containing 1	AK017471|Sft2d1|106489|SFT2 domain containing 1
mm9_v1_chr5_+_139231485_139231583	0.305058	NHLH1,2.p2	AK220286|Fam20c|80752|family with sequence similarity 20, member C
mm9_v1_chr2_+_130732201_130732231	0.304378	NHLH1,2.p2	AK155069|Atrn|11990|attractin	AF116897|Atrn|11990|attractin	NM_009730|Atrn|11990|attractin
mm9_v1_chr4_+_59818711_59818767	0.304179	NHLH1,2.p2	AK165619|Snx30|209131|sorting nexin family member 30	AK029012|Snx30|209131|sorting nexin family member 30	AK170999|Snx30|209131|sorting nexin family member 30	BC099674|Snx30|209131|sorting nexin family member 30	AK170774|Snx30|209131|sorting nexin family member 30
mm9_v1_chr12_-_4483975_4484031	0.304169	NHLH1,2.p2	U64828|Ncoa1|17977|nuclear receptor coactivator 1
mm9_v1_chr7_-_52071027_52071027	0.304148	NHLH1,2.p2	AF375476|Atf5|107503|activating transcription factor 5	NM_030693|Atf5|107503|activating transcription factor 5
mm9_v1_chr8_-_69211936_69211992	0.303667	NHLH1,2.p2	AK045587|Npy5r|18168|neuropeptide Y receptor Y5	BC116976|Npy5r|18168|neuropeptide Y receptor Y5	BC116978|Npy5r|18168|neuropeptide Y receptor Y5	AB001346|Npy5r|18168|neuropeptide Y receptor Y5	NM_016708|Npy5r|18168|neuropeptide Y receptor Y5
mm9_v1_chr4_+_131830270_131830384	0.302643	NHLH1,2.p2	AK132927|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_025579|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK007811|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK013133|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC019668|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK139748|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr10_+_84380305_84380360	0.302557	NHLH1,2.p2	BC051080|Ric8b|237422|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)	NM_183172|Ric8b|237422|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)
mm9_v1_chr19_+_45063750_45063833	0.302176	NHLH1,2.p2	AK039355|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	BC054532|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	AK173219|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	AF134918|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	NM_011976|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm9_v1_chr7_+_134355216_134355237	0.30198	NHLH1,2.p2	AK003149|Mylpf|17907|myosin light chain, phosphorylatable, fast skeletal muscle	BC055869|Mylpf|17907|myosin light chain, phosphorylatable, fast skeletal muscle
mm9_v1_chr3_+_60432922_60432975	0.301447	NHLH1,2.p2	AK166145|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr14_-_21871400_21871464	0.301266	NHLH1,2.p2	AK004740|Ap3m1|55946|adaptor-related protein complex 3, mu 1 subunit	BC090983|Ap3m1|55946|adaptor-related protein complex 3, mu 1 subunit
mm9_v1_chr12_-_55963776_55963890	0.301165	NHLH1,2.p2	AK147174|Cfl2|12632|cofilin 2, muscle	BC007138|Cfl2|12632|cofilin 2, muscle	AK004659|Cfl2|12632|cofilin 2, muscle	L29468|Cfl2|12632|cofilin 2, muscle	NM_007688|Cfl2|12632|cofilin 2, muscle
mm9_v1_chrX_-_7475999_7476071	0.301144	NHLH1,2.p2	BC157976|Pqbp1|54633|polyglutamine binding protein 1
mm9_v1_chr9_-_119066057_119066210	0.300976	NHLH1,2.p2	AK160568|Acaa1b|235674|acetyl-Coenzyme A acyltransferase 1B	BC019882|Acaa1b|235674|acetyl-Coenzyme A acyltransferase 1B	AK145953|Acaa1b|235674|acetyl-Coenzyme A acyltransferase 1B	AY273812|Acaa1b|235674|acetyl-Coenzyme A acyltransferase 1B	NM_146230|Acaa1b|235674|acetyl-Coenzyme A acyltransferase 1B
mm9_v1_chr5_+_102910569_102910573	0.300469	NHLH1,2.p2	BC025502|Arhgap24|231532|Rho GTPase activating protein 24
mm9_v1_chr3_+_135101314_135101542	0.299951	NHLH1,2.p2	AK151295|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK153100|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK077666|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK153423|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK159125|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
mm9_v1_chr13_+_41701584_41701584	0.299501	NHLH1,2.p2	NM_001163572|Tmem170b|621976|transmembrane protein 170B
mm9_v1_chr10_+_87323855_87324094	0.299305	NHLH1,2.p2	NM_001111274|Igf1|16000|insulin-like growth factor 1	NM_001111276|Igf1|16000|insulin-like growth factor 1	NM_184052|Igf1|16000|insulin-like growth factor 1	X04480|Igf1|16000|insulin-like growth factor 1	X04482|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr13_+_74487800_74487826	0.29914	NHLH1,2.p2	BC049099|Ccdc127|67433|coiled-coil domain containing 127	AK007738|Ccdc127|67433|coiled-coil domain containing 127
mm9_v1_chr4_-_149377238_149377303	0.297959	NHLH1,2.p2	BC042677|H6pd|100198|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	AK159373|H6pd|100198|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	AK172249|H6pd|100198|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
mm9_v1_chr1_-_40847501_40847531	0.297859	NHLH1,2.p2	AK029874|Mfsd9|211798|major facilitator superfamily domain containing 9	NM_172499|Mfsd9|211798|major facilitator superfamily domain containing 9	BC057633|Mfsd9|211798|major facilitator superfamily domain containing 9	AK169911|Mfsd9|211798|major facilitator superfamily domain containing 9
mm9_v1_chr11_+_60230781_60230944	0.296985	NHLH1,2.p2	AK164644|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	BC052418|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AK012042|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	BC046821|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AK142753|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	BC044901|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene
mm9_v1_chr9_+_44287171_44287176	0.296438	NHLH1,2.p2	AK078316|C030014I23Rik|77381|RIKEN cDNA C030014I23 gene
mm9_v1_chr2_-_120676125_120676339	0.296147	NHLH1,2.p2	AK046978|Ttbk2|140810|tau tubulin kinase 2	AK053820|Ttbk2|140810|tau tubulin kinase 2	AK137024|Ttbk2|140810|tau tubulin kinase 2	AK148269|Ttbk2|140810|tau tubulin kinase 2	NM_001024856|Ttbk2|140810|tau tubulin kinase 2	NM_001024857|Ttbk2|140810|tau tubulin kinase 2	NM_080788|Ttbk2|140810|tau tubulin kinase 2	AK077011|Ttbk2|140810|tau tubulin kinase 2
mm9_v1_chr14_-_33015012_33015098	0.296143	NHLH1,2.p2	BC062963|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	AK013976|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	BC132019|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	BC132319|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	BC096669|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	AK146516|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	BC037022|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	BC069903|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	AB021122|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	NM_016897|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)
mm9_v1_chr2_+_155343767_155343780	0.295342	NHLH1,2.p2	BC051432|Acss2|60525|acyl-CoA synthetase short-chain family member 2	NM_019811|Acss2|60525|acyl-CoA synthetase short-chain family member 2
mm9_v1_chr15_+_97622785_97622875	0.295303	NHLH1,2.p2	AK195068|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK196553|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK214093|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK216369|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1
mm9_v1_chr15_-_89145631_89145745	0.294841	NHLH1,2.p2	BC157935|Sbf1|77980|SET binding factor 1	BC158013|Sbf1|77980|SET binding factor 1	BC172094|Sbf1|77980|SET binding factor 1	AK129485|Sbf1|77980|SET binding factor 1	AK147332|Sbf1|77980|SET binding factor 1	NM_001081030|Sbf1|77980|SET binding factor 1	NM_001170561|Sbf1|77980|SET binding factor 1
mm9_v1_chr14_+_33015123_33015189	0.294691	NHLH1,2.p2	AK036656|Parg|26430|poly (ADP-ribose) glycohydrolase	AK163388|Parg|26430|poly (ADP-ribose) glycohydrolase	EF382673|Parg|26430|poly (ADP-ribose) glycohydrolase	BC059827|Parg|26430|poly (ADP-ribose) glycohydrolase	NM_011960|Parg|26430|poly (ADP-ribose) glycohydrolase	BC050892|Parg|26430|poly (ADP-ribose) glycohydrolase	AK080306|Parg|26430|poly (ADP-ribose) glycohydrolase	AK164013|Parg|26430|poly (ADP-ribose) glycohydrolase	BC053037|Parg|26430|poly (ADP-ribose) glycohydrolase
mm9_v1_chrX_-_131543723_131543772	0.294028	NHLH1,2.p2	BC067022|Zmat1|215693|zinc finger, matrin type 1	NM_175446|Zmat1|215693|zinc finger, matrin type 1
mm9_v1_chr7_+_133415982_133416132	0.29322	NHLH1,2.p2	BC031759|Sbk1|104175|SH3-binding kinase 1	NM_145587|Sbk1|104175|SH3-binding kinase 1
mm9_v1_chr9_-_44169716_44169758	0.293173	NHLH1,2.p2	AK032484|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK047228|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK153963|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK037658|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK162897|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK004695|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK090030|Vps11|71732|vacuolar protein sorting 11 (yeast)	BC029004|Vps11|71732|vacuolar protein sorting 11 (yeast)	NM_027889|Vps11|71732|vacuolar protein sorting 11 (yeast)
mm9_v1_chr2_+_112079943_112080042	0.29249	NHLH1,2.p2	BC068131|Lpcat4|99010|lysophosphatidylcholine acyltransferase 4	NM_207206|Lpcat4|99010|lysophosphatidylcholine acyltransferase 4	BC080829|Lpcat4|99010|lysophosphatidylcholine acyltransferase 4
mm9_v1_chr19_-_42506122_42506286	0.292412	NHLH1,2.p2	AJ421516|Crtac1|72832|cartilage acidic protein 1	AK032328|Crtac1|72832|cartilage acidic protein 1	AK049801|Crtac1|72832|cartilage acidic protein 1	AK149069|Crtac1|72832|cartilage acidic protein 1	NM_145123|Crtac1|72832|cartilage acidic protein 1	AK083221|Crtac1|72832|cartilage acidic protein 1	AK149020|Crtac1|72832|cartilage acidic protein 1
mm9_v1_chr11_+_63893006_63893054	0.292169	NHLH1,2.p2	AK005116|2810001G20Rik|66456|RIKEN cDNA 2810001G20 gene
mm9_v1_chr16_-_37654443_37654469	0.291614	NHLH1,2.p2	BC096421|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	AK004958|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	BC087907|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	AK009807|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	AK018707|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	NM_026610|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	BC056229|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4
mm9_v1_chr7_+_107520787_107520818	0.291501	NHLH1,2.p2	AK165331|C2cd3|277939|C2 calcium-dependent domain containing 3	AK162155|C2cd3|277939|C2 calcium-dependent domain containing 3
mm9_v1_chr5_-_101227486_101227632	0.291468	NHLH1,2.p2	BC109169|Helq|191578|helicase, POLQ-like	BC109170|Helq|191578|helicase, POLQ-like	AK052427|Helq|191578|helicase, POLQ-like	BC082601|Helq|191578|helicase, POLQ-like	AK050769|Helq|191578|helicase, POLQ-like	AK040335|Helq|191578|helicase, POLQ-like	NM_001081107|Helq|191578|helicase, POLQ-like
mm9_v1_chr17_+_33947466_33947491	0.291312	NHLH1,2.p2	AK002623|Kank3|80880|KN motif and ankyrin repeat domains 3	AK132011|Kank3|80880|KN motif and ankyrin repeat domains 3	BC061055|Kank3|80880|KN motif and ankyrin repeat domains 3	NM_030697|Kank3|80880|KN motif and ankyrin repeat domains 3	BC037741|Kank3|80880|KN motif and ankyrin repeat domains 3
mm9_v1_chr7_+_112789644_112789816	0.290443	NHLH1,2.p2	
mm9_v1_chr8_+_125778094_125778211	0.290421	NHLH1,2.p2	AK133363|Zfp276|57247|zinc finger protein (C2H2 type) 276	NM_020497|Zfp276|57247|zinc finger protein (C2H2 type) 276	AK028939|Zfp276|57247|zinc finger protein (C2H2 type) 276	AK043258|Zfp276|57247|zinc finger protein (C2H2 type) 276	BC066056|Zfp276|57247|zinc finger protein (C2H2 type) 276
mm9_v1_chrX_+_131252456_131252527	0.290165	NHLH1,2.p2	NM_001166377|Armcx1|78248|armadillo repeat containing, X-linked 1	NM_001166378|Armcx1|78248|armadillo repeat containing, X-linked 1	NM_001166379|Armcx1|78248|armadillo repeat containing, X-linked 1	NM_001166380|Armcx1|78248|armadillo repeat containing, X-linked 1	NM_030066|Armcx1|78248|armadillo repeat containing, X-linked 1	BC026488|Armcx1|78248|armadillo repeat containing, X-linked 1	AK147002|Armcx1|78248|armadillo repeat containing, X-linked 1	BC068228|Armcx1|78248|armadillo repeat containing, X-linked 1
mm9_v1_chr12_-_29320713_29320798	0.290054	NHLH1,2.p2	AK135520|Rps7|20115|ribosomal protein S7	AK160632|Rps7|20115|ribosomal protein S7	AK166096|Rps7|20115|ribosomal protein S7	AK169636|Rps7|20115|ribosomal protein S7
mm9_v1_chr14_-_70843185_70843279	0.290032	NHLH1,2.p2	AK156587|Polr3d|67065|polymerase (RNA) III (DNA directed) polypeptide D	BC016102|Polr3d|67065|polymerase (RNA) III (DNA directed) polypeptide D	NM_025945|Polr3d|67065|polymerase (RNA) III (DNA directed) polypeptide D
mm9_v1_chr14_+_55502200_55502231	0.289274	NHLH1,2.p2	AK004680|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr6_-_57775039_57775171	0.288918	NHLH1,2.p2	BC024884|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK170152|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK170832|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK030975|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	BC024822|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	NM_146168|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK031812|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK158041|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK165256|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1
mm9_v1_chr1_+_166205728_166205836	0.288212	NHLH1,2.p2	BC060044|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	NM_029115|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK076640|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK149168|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK015464|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	BC048086|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene
mm9_v1_chr5_-_92512486_92512611	0.28817	NHLH1,2.p2	AK153893|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK153221|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151732|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080794|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080796|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC119806|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC122883|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr11_+_117848070_117848188	0.287781	NHLH1,2.p2	BC151089|Pgs1|74451|phosphatidylglycerophosphate synthase 1	BC151185|Pgs1|74451|phosphatidylglycerophosphate synthase 1	AK049359|Pgs1|74451|phosphatidylglycerophosphate synthase 1	NM_133757|Pgs1|74451|phosphatidylglycerophosphate synthase 1	AK046174|Pgs1|74451|phosphatidylglycerophosphate synthase 1	AK053905|Pgs1|74451|phosphatidylglycerophosphate synthase 1
mm9_v1_chr9_-_71333706_71333789	0.286546	NHLH1,2.p2	AK079119|Grinl1a|28015|glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A	BC062199|Grinl1a|28015|glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A	BC018502|Grinl1a|28015|glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A	AK014316|Grinl1a|28015|glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A	AK051868|Grinl1a|28015|glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A	AK078750|Grinl1a|28015|glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A	AK151221|Grinl1a|28015|glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A	AK017773|Grinl1a|28015|glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A	AK136806|Grinl1a|28015|glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A	AK159924|Grinl1a|28015|glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A	AK166738|Grinl1a|28015|glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A	AK052037|Grinl1a|28015|glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A	NM_178602|Grinl1a|28015|glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A
mm9_v1_chr15_-_91022198_91022269	0.285941	NHLH1,2.p2	AK082588|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2	AK051445|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2	Z48670|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2	NM_011994|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2
mm9_v1_chr10_-_41023009_41023070	0.28574	NHLH1,2.p2	AK169881|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK172341|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK172130|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK155392|Fig4|103199|FIG4 homolog (S. cerevisiae)	BC031887|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK041196|Fig4|103199|FIG4 homolog (S. cerevisiae)	BC015295|Fig4|103199|FIG4 homolog (S. cerevisiae)	NM_133999|Fig4|103199|FIG4 homolog (S. cerevisiae)
mm9_v1_chr10_-_94964557_94964601	0.285738	NHLH1,2.p2	BC024337|Mrpl42|67270|mitochondrial ribosomal protein L42	AK002530|Mrpl42|67270|mitochondrial ribosomal protein L42	AK003427|Mrpl42|67270|mitochondrial ribosomal protein L42	AK012227|Mrpl42|67270|mitochondrial ribosomal protein L42	NM_026065|Mrpl42|67270|mitochondrial ribosomal protein L42	AK013693|Mrpl42|67270|mitochondrial ribosomal protein L42	AK154032|Mrpl42|67270|mitochondrial ribosomal protein L42
mm9_v1_chr12_+_66018897_66018897	0.285695	NHLH1,2.p2	BC099503|Gm527|217648|predicted gene 527	NM_001025605|Gm527|217648|predicted gene 527
mm9_v1_chr8_+_125897631_125897921	0.285557	NHLH1,2.p2	BC046768|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	NM_025804|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK045397|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK050274|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK148082|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK003180|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK088360|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	NM_001037878|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK089964|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK150232|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK150918|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK151558|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK161627|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	NM_001037877|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK150942|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK151143|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK152178|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK152494|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK167837|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK168167|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	BC016130|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	BC025071|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	U94988|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK122430|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK075728|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	EU624323|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK013754|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)
mm9_v1_chr7_-_111463903_111464008	0.285212	NHLH1,2.p2	BC094899|Trim12a|76681|tripartite motif-containing 12A	AK009769|Trim12a|76681|tripartite motif-containing 12A	AF220126|Trim12a|76681|tripartite motif-containing 12A	AK150759|Trim12a|76681|tripartite motif-containing 12A	AK153559|Trim12a|76681|tripartite motif-containing 12A	NM_023835|Trim12a|76681|tripartite motif-containing 12A
mm9_v1_chr7_+_133924996_133925020	0.285103	NHLH1,2.p2	BC140951|Tbx6|21389|T-box 6	NM_011538|Tbx6|21389|T-box 6	U57331|Tbx6|21389|T-box 6	AY654733|Tbx6|21389|T-box 6
mm9_v1_chr8_+_87583954_87584056	0.283771	NHLH1,2.p2	AK156709|Fbxw9|68628|F-box and WD-40 domain protein 9	NM_026791|Fbxw9|68628|F-box and WD-40 domain protein 9	BC043658|Fbxw9|68628|F-box and WD-40 domain protein 9
mm9_v1_chr11_-_120509650_120509650	0.283614	NHLH1,2.p2	NM_026751|Myadml2|68515|myeloid-associated differentiation marker-like 2
mm9_v1_chr6_-_127059521_127059603	0.28208	NHLH1,2.p2	AK163290|9630033F20Rik|319801|RIKEN cDNA 9630033F20 gene	AK145896|9630033F20Rik|319801|RIKEN cDNA 9630033F20 gene	AK036082|9630033F20Rik|319801|RIKEN cDNA 9630033F20 gene	AK078900|9630033F20Rik|319801|RIKEN cDNA 9630033F20 gene	BC147705|9630033F20Rik|319801|RIKEN cDNA 9630033F20 gene	BC147718|9630033F20Rik|319801|RIKEN cDNA 9630033F20 gene	AK165614|9630033F20Rik|319801|RIKEN cDNA 9630033F20 gene	NM_177003|9630033F20Rik|319801|RIKEN cDNA 9630033F20 gene
mm9_v1_chr14_+_27399015_27399092	0.280409	NHLH1,2.p2	AK054295|Fam116a|211922|family with sequence similarity 116, member A	NM_001134465|Fam116a|211922|family with sequence similarity 116, member A	NM_145969|Fam116a|211922|family with sequence similarity 116, member A	AK132219|Fam116a|211922|family with sequence similarity 116, member A	AK131163|Fam116a|211922|family with sequence similarity 116, member A	BC025603|Fam116a|211922|family with sequence similarity 116, member A	AK161908|Fam116a|211922|family with sequence similarity 116, member A	AK054197|Fam116a|211922|family with sequence similarity 116, member A
mm9_v1_chr11_-_97847679_97847782	0.27995	NHLH1,2.p2	BC114352|Plxdc1|72324|plexin domain containing 1	AF378760|Plxdc1|72324|plexin domain containing 1	AK036144|Plxdc1|72324|plexin domain containing 1	AK153684|Plxdc1|72324|plexin domain containing 1	AK040620|Plxdc1|72324|plexin domain containing 1	AK010361|Plxdc1|72324|plexin domain containing 1	NM_001163608|Plxdc1|72324|plexin domain containing 1	NM_028199|Plxdc1|72324|plexin domain containing 1
mm9_v1_chr15_-_93166789_93166977	0.279889	NHLH1,2.p2	AK184096|Yaf2|67057|YY1 associated factor 2	AK012787|Yaf2|67057|YY1 associated factor 2
mm9_v1_chr4_+_43071801_43071847	0.279379	NHLH1,2.p2	AF115848|Unc13b|22249|unc-13 homolog B (C. elegans)	BC024771|Unc13b|22249|unc-13 homolog B (C. elegans)
mm9_v1_chr2_+_148506844_148506905	0.278696	NHLH1,2.p2	NM_028986|Gzf1|74533|GDNF-inducible zinc finger protein 1	AK141153|Gzf1|74533|GDNF-inducible zinc finger protein 1	AK052820|Gzf1|74533|GDNF-inducible zinc finger protein 1	AK053262|Gzf1|74533|GDNF-inducible zinc finger protein 1	AK080513|Gzf1|74533|GDNF-inducible zinc finger protein 1
mm9_v1_chr13_+_55724400_55724442	0.278406	NHLH1,2.p2	U21960|Caml|12328|calcium modulating ligand	BC005688|Caml|12328|calcium modulating ligand
mm9_v1_chrX_+_53599573_53599586	0.278017	NHLH1,2.p2	AK142888|Zfp449|78619|zinc finger protein 449	AK036596|Zfp449|78619|zinc finger protein 449	NM_030139|Zfp449|78619|zinc finger protein 449	AK020600|Zfp449|78619|zinc finger protein 449
mm9_v1_chr2_+_32391249_32391261	0.277679	NHLH1,2.p2	AK157331|Fam102a|98952|family with sequence similarity 102, member A	AK157490|Fam102a|98952|family with sequence similarity 102, member A	AK158435|Fam102a|98952|family with sequence similarity 102, member A	AK165751|Fam102a|98952|family with sequence similarity 102, member A	AK170951|Fam102a|98952|family with sequence similarity 102, member A	AK172536|Fam102a|98952|family with sequence similarity 102, member A	AK170847|Fam102a|98952|family with sequence similarity 102, member A
mm9_v1_chr17_+_24731733_24731749	0.277642	NHLH1,2.p2	AK014622|Pkd1|18763|polycystic kidney disease 1 homolog
mm9_v1_chr5_-_33617477_33617628	0.276712	NHLH1,2.p2	AK182443|Ctbp1|13016|C-terminal binding protein 1	AK189146|Ctbp1|13016|C-terminal binding protein 1	AJ010483|Ctbp1|13016|C-terminal binding protein 1	BC015071|Ctbp1|13016|C-terminal binding protein 1	AK165276|Ctbp1|13016|C-terminal binding protein 1	AB033122|Ctbp1|13016|C-terminal binding protein 1	AK133816|Ctbp1|13016|C-terminal binding protein 1	BC042425|Ctbp1|13016|C-terminal binding protein 1
mm9_v1_chr9_-_37464614_37464896	0.27652	NHLH1,2.p2	AK185995|Tbrg1|21376|transforming growth factor beta regulated gene 1	DQ144541|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK131638|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK151075|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK151209|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC054057|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC037145|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK151457|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC040813|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC065795|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC043022|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK166547|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK011268|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK150549|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK003270|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK011614|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK010925|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC021331|Tbrg1|21376|transforming growth factor beta regulated gene 1	NM_025289|Tbrg1|21376|transforming growth factor beta regulated gene 1
mm9_v1_chr17_-_87665228_87665308	0.275805	NHLH1,2.p2	AK077139|Mcfd2|193813|multiple coagulation factor deficiency 2	AK141599|Mcfd2|193813|multiple coagulation factor deficiency 2	AF475283|Mcfd2|193813|multiple coagulation factor deficiency 2	AK151803|Mcfd2|193813|multiple coagulation factor deficiency 2	NM_139295|Mcfd2|193813|multiple coagulation factor deficiency 2	NM_176808|Mcfd2|193813|multiple coagulation factor deficiency 2
mm9_v1_chr6_+_40275473_40275514	0.274687	NHLH1,2.p2	NM_023538|Agk|69923|acylglycerol kinase	AK011715|Agk|69923|acylglycerol kinase	AK020107|Agk|69923|acylglycerol kinase	BC019145|Agk|69923|acylglycerol kinase	AJ401619|Agk|69923|acylglycerol kinase	AK089433|Agk|69923|acylglycerol kinase	BC093525|Agk|69923|acylglycerol kinase	AK155346|Agk|69923|acylglycerol kinase	AK076224|Agk|69923|acylglycerol kinase
mm9_v1_chr7_+_108534039_108534039	0.274499	NHLH1,2.p2	NM_027180|Arap1|69710|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
mm9_v1_chr7_-_134968017_134968064	0.274496	NHLH1,2.p2	NM_024414|Stx1b|56216|syntaxin 1B
mm9_v1_chr9_-_22112081_22112120	0.27431	NHLH1,2.p2	BC005471|Zfp810|235050|zinc finger protein 810	NM_145612|Zfp810|235050|zinc finger protein 810	AK032556|Zfp810|235050|zinc finger protein 810
mm9_v1_chr15_-_76039082_76039082	0.273303	NHLH1,2.p2	AF188022|Plec|18810|plectin	AY480036|Plec|18810|plectin	NM_201387|Plec|18810|plectin
mm9_v1_chr8_-_112103065_112103072	0.27291	NHLH1,2.p2	NM_017370|Hp|15439|haptoglobin
mm9_v1_chr5_-_143667004_143667334	0.27249	NHLH1,2.p2	AK218610|Actb|11461|actin, beta	AK206771|Actb|11461|actin, beta	AK208252|Actb|11461|actin, beta	AK202772|Actb|11461|actin, beta	M12481|Actb|11461|actin, beta	X03765|Actb|11461|actin, beta	EF095208|Actb|11461|actin, beta
mm9_v1_chr17_-_71339826_71339901	0.272347	NHLH1,2.p2	BC099425|Myl12b|67938|myosin, light chain 12B, regulatory	BC131925|Myl12b|67938|myosin, light chain 12B, regulatory	BC131927|Myl12b|67938|myosin, light chain 12B, regulatory	BC028878|Myl12b|67938|myosin, light chain 12B, regulatory	AK002885|Myl12b|67938|myosin, light chain 12B, regulatory	AK168316|Myl12b|67938|myosin, light chain 12B, regulatory	NM_023402|Myl12b|67938|myosin, light chain 12B, regulatory	AK146115|Myl12b|67938|myosin, light chain 12B, regulatory	AK005133|Myl12b|67938|myosin, light chain 12B, regulatory	AK160123|Myl12b|67938|myosin, light chain 12B, regulatory
mm9_v1_chr12_+_104770650_104770779	0.272343	NHLH1,2.p2	AK029499|Ppp4r4|74521|protein phosphatase 4, regulatory subunit 4	NM_028980|Ppp4r4|74521|protein phosphatase 4, regulatory subunit 4	BC111887|Ppp4r4|74521|protein phosphatase 4, regulatory subunit 4	BC113754|Ppp4r4|74521|protein phosphatase 4, regulatory subunit 4
mm9_v1_chr11_+_115243203_115243359	0.271982	NHLH1,2.p2	NM_001080929|Cdr2l|237988|cerebellar degeneration-related protein 2-like	BC144823|Cdr2l|237988|cerebellar degeneration-related protein 2-like	BC150668|Cdr2l|237988|cerebellar degeneration-related protein 2-like
mm9_v1_chr15_-_76039510_76039594	0.271826	NHLH1,2.p2	AK017743|Plec|18810|plectin	AF188017|Plec|18810|plectin	AF188018|Plec|18810|plectin	AY480035|Plec|18810|plectin	NM_201386|Plec|18810|plectin
mm9_v1_chr10_+_127472401_127472401	0.271773	NHLH1,2.p2	NM_001113199|Naca|17938|nascent polypeptide-associated complex alpha polypeptide	NM_013608|Naca|17938|nascent polypeptide-associated complex alpha polypeptide
mm9_v1_chr8_+_11758322_11758364	0.271431	NHLH1,2.p2	NM_001113518|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	NM_017402|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	BC044838|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK052545|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AY220301|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)
mm9_v1_chr13_+_49703402_49703439	0.271156	NHLH1,2.p2	AK028300|Ogn|18295|osteoglycin	AK160760|Ogn|18295|osteoglycin	AK053650|Ogn|18295|osteoglycin	NM_008760|Ogn|18295|osteoglycin
mm9_v1_chr18_-_6135924_6136095	0.270937	NHLH1,2.p2	AK031648|Arhgap12|75415|Rho GTPase activating protein 12	AK012717|Arhgap12|75415|Rho GTPase activating protein 12	AK077063|Arhgap12|75415|Rho GTPase activating protein 12	NM_001039692|Arhgap12|75415|Rho GTPase activating protein 12	NM_029277|Arhgap12|75415|Rho GTPase activating protein 12
mm9_v1_chr7_-_137663020_137663074	0.270696	NHLH1,2.p2	BC050948|Ate1|11907|arginyltransferase 1	NM_001136054|Ate1|11907|arginyltransferase 1	AK167591|Ate1|11907|arginyltransferase 1	BC042601|Ate1|11907|arginyltransferase 1	NM_013799|Ate1|11907|arginyltransferase 1	AK148442|Ate1|11907|arginyltransferase 1
mm9_v1_chr6_-_118147735_118147761	0.270497	NHLH1,2.p2	BC059012|Ret|19713|ret proto-oncogene	NM_001080780|Ret|19713|ret proto-oncogene	NM_009050|Ret|19713|ret proto-oncogene
mm9_v1_chr8_-_122333416_122333530	0.270149	NHLH1,2.p2	AK216368|Cotl1|72042|coactosin-like 1 (Dictyostelium)
mm9_v1_chr1_+_43990808_43990922	0.26978	NHLH1,2.p2	BC060627|Tpp2|22019|tripeptidyl peptidase II	NM_009418|Tpp2|22019|tripeptidyl peptidase II	X81323|Tpp2|22019|tripeptidyl peptidase II	AK170047|Tpp2|22019|tripeptidyl peptidase II	AK171519|Tpp2|22019|tripeptidyl peptidase II	AK012017|Tpp2|22019|tripeptidyl peptidase II	AK159865|Tpp2|22019|tripeptidyl peptidase II	AK141908|Tpp2|22019|tripeptidyl peptidase II	AK087835|Tpp2|22019|tripeptidyl peptidase II	AK154144|Tpp2|22019|tripeptidyl peptidase II	BC011275|Tpp2|22019|tripeptidyl peptidase II	AK038041|Tpp2|22019|tripeptidyl peptidase II	AK040859|Tpp2|22019|tripeptidyl peptidase II	BC058239|Tpp2|22019|tripeptidyl peptidase II	BC052318|Tpp2|22019|tripeptidyl peptidase II
mm9_v1_chr17_-_71948080_71948114	0.269761	NHLH1,2.p2	AK032413|Trmt61b|68789|tRNA methyltransferase 61 homolog B (S. cerevisiae)	AK036113|Trmt61b|68789|tRNA methyltransferase 61 homolog B (S. cerevisiae)
mm9_v1_chr15_-_89307854_89307854	0.269654	NHLH1,2.p2	BC098075|Arsa|11883|arylsulfatase A	NM_009713|Arsa|11883|arylsulfatase A
mm9_v1_chr5_-_142985612_142985614	0.269561	NHLH1,2.p2	AK079539|Radil|231858|Ras association and DIL domains
mm9_v1_chr10_-_80260534_80260707	0.269267	NHLH1,2.p2	AK219000|Plekhj1|78670|pleckstrin homology domain containing, family J member 1	AK178993|Plekhj1|78670|pleckstrin homology domain containing, family J member 1
mm9_v1_chr17_+_5341444_5341585	0.269127	NHLH1,2.p2	AK135725|Arid1b|239985|AT rich interactive domain 1B (SWI-like)	AK033272|Arid1b|239985|AT rich interactive domain 1B (SWI-like)	AK139800|Arid1b|239985|AT rich interactive domain 1B (SWI-like)
mm9_v1_chr5_-_100812885_100812885	0.268832	NHLH1,2.p2	BC054358|Sec31a|69162|Sec31 homolog A (S. cerevisiae)
mm9_v1_chr11_-_99877508_99877525	0.268245	NHLH1,2.p2	BC029257|Krt33a|71888|keratin 33A	AK009363|Krt33a|71888|keratin 33A	AK037251|Krt33a|71888|keratin 33A	NM_027983|Krt33a|71888|keratin 33A
mm9_v1_chr6_-_40386107_40386145	0.267971	NHLH1,2.p2	AK145280|E330009J07Rik|243780|RIKEN cDNA E330009J07 gene	AK147402|E330009J07Rik|243780|RIKEN cDNA E330009J07 gene	AK054277|E330009J07Rik|243780|RIKEN cDNA E330009J07 gene	NM_175528|E330009J07Rik|243780|RIKEN cDNA E330009J07 gene
mm9_v1_chr7_+_119369347_119369415	0.266928	NHLH1,2.p2	NM_001193305|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	NM_177282|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK030608|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK138935|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK163078|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK143191|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK161075|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK163231|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2
mm9_v1_chr10_-_13588578_13588812	0.266919	NHLH1,2.p2	AK008210|Aig1|66253|androgen-induced 1	NM_025446|Aig1|66253|androgen-induced 1	AK162306|Aig1|66253|androgen-induced 1	AK005332|Aig1|66253|androgen-induced 1	AK084050|Aig1|66253|androgen-induced 1	BC035305|Aig1|66253|androgen-induced 1
mm9_v1_chr15_+_101974978_101975063	0.266498	NHLH1,2.p2	CT010184|Igfbp6|16012|insulin-like growth factor binding protein 6
mm9_v1_chr3_-_122241909_122241984	0.266318	NHLH1,2.p2	AK019185|Fnbp1l|214459|formin binding protein 1-like
mm9_v1_chr6_+_41408925_41408939	0.265995	NHLH1,2.p2	NM_053243|Prss1|114228|protease, serine, 1 (trypsin 1)	BC094921|Prss1|114228|protease, serine, 1 (trypsin 1)
mm9_v1_chr5_-_122161466_122161489	0.26494	NHLH1,2.p2	AK018874|1700064N11Rik|78458|RIKEN cDNA 1700064N11 gene
mm9_v1_chr8_-_35209773_35209872	0.264767	NHLH1,2.p2	AK159401|Leprotl1|68192|leptin receptor overlapping transcript-like 1	BC004677|Leprotl1|68192|leptin receptor overlapping transcript-like 1	NM_026609|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK003329|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK153277|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK075740|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK150289|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK154712|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK013870|Leprotl1|68192|leptin receptor overlapping transcript-like 1
mm9_v1_chr2_+_71367501_71367643	0.264539	NHLH1,2.p2	NM_010053|Dlx1|13390|distal-less homeobox 1	U51001|Dlx1|13390|distal-less homeobox 1	BC079609|Dlx1|13390|distal-less homeobox 1
mm9_v1_chr11_+_69778280_69778280	0.263907	NHLH1,2.p2	NM_001193619|Cldn7|53624|claudin 7
mm9_v1_chr9_-_21921573_21921635	0.263445	NHLH1,2.p2	BC019870|Elof1|66126|elongation factor 1 homolog (ELF1, S. cerevisiae)	BC024488|Elof1|66126|elongation factor 1 homolog (ELF1, S. cerevisiae)	AK014116|Elof1|66126|elongation factor 1 homolog (ELF1, S. cerevisiae)	AK089052|Elof1|66126|elongation factor 1 homolog (ELF1, S. cerevisiae)	AK002505|Elof1|66126|elongation factor 1 homolog (ELF1, S. cerevisiae)	AK003614|Elof1|66126|elongation factor 1 homolog (ELF1, S. cerevisiae)
mm9_v1_chr11_-_69362609_69362611	0.262798	NHLH1,2.p2	NM_001081330|Dnahc2|327954|dynein, axonemal, heavy chain 2	AK051796|Dnahc2|327954|dynein, axonemal, heavy chain 2
mm9_v1_chr17_+_13897509_13897625	0.262599	NHLH1,2.p2	NM_010806|Mllt4|17356|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4	AF172447|Mllt4|17356|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4	AK166398|Mllt4|17356|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4
mm9_v1_chr6_-_119988039_119988126	0.26232	NHLH1,2.p2	AK160909|Wnk1|232341|WNK lysine deficient protein kinase 1	BC020278|Wnk1|232341|WNK lysine deficient protein kinase 1
mm9_v1_chr6_+_28373521_28373688	0.261551	NHLH1,2.p2	BC132452|Arf5|11844|ADP-ribosylation factor 5	BC138756|Arf5|11844|ADP-ribosylation factor 5	D87902|Arf5|11844|ADP-ribosylation factor 5	NM_007480|Arf5|11844|ADP-ribosylation factor 5
mm9_v1_chrX_+_90531783_90531984	0.261341	NHLH1,2.p2	AB006103|Arx|11878|aristaless related homeobox	BC052033|Arx|11878|aristaless related homeobox	NM_007492|Arx|11878|aristaless related homeobox
mm9_v1_chr6_+_124989841_124989878	0.261212	NHLH1,2.p2	AK046126|Ing4|28019|inhibitor of growth family, member 4	AK050522|Ing4|28019|inhibitor of growth family, member 4	AK031633|Ing4|28019|inhibitor of growth family, member 4	AK002821|Ing4|28019|inhibitor of growth family, member 4	AK009267|Ing4|28019|inhibitor of growth family, member 4	NM_133345|Ing4|28019|inhibitor of growth family, member 4	BC009127|Ing4|28019|inhibitor of growth family, member 4	AY035880|Ing4|28019|inhibitor of growth family, member 4	AY035881|Ing4|28019|inhibitor of growth family, member 4	AY036107|Ing4|28019|inhibitor of growth family, member 4
mm9_v1_chr7_-_31524374_31524374	0.260772	NHLH1,2.p2	NM_008085|Gapdhs|14447|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
mm9_v1_chr2_+_25118098_25118140	0.260714	NHLH1,2.p2	AK171799|Tprn|97031|taperin	NM_175286|Tprn|97031|taperin	AK082888|Tprn|97031|taperin
mm9_v1_chr16_-_97392319_97392342	0.260481	NHLH1,2.p2	AY005483|Dscam|13508|Down syndrome cell adhesion molecule	NM_031174|Dscam|13508|Down syndrome cell adhesion molecule
mm9_v1_chr5_+_130221363_130221410	0.260353	NHLH1,2.p2	AK009568|Mrps17|66258|mitochondrial ribosomal protein S17	AK171397|Mrps17|66258|mitochondrial ribosomal protein S17	AK007356|Mrps17|66258|mitochondrial ribosomal protein S17	AK134065|Mrps17|66258|mitochondrial ribosomal protein S17	NM_025450|Mrps17|66258|mitochondrial ribosomal protein S17	AK003008|Mrps17|66258|mitochondrial ribosomal protein S17	AB049951|Mrps17|66258|mitochondrial ribosomal protein S17
mm9_v1_chr8_-_26127346_26127364	0.260264	NHLH1,2.p2	AK155582|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)
mm9_v1_chr17_-_35837432_35837546	0.260164	NHLH1,2.p2	AF026259|Ddr1|12305|discoidin domain receptor family, member 1	BC006836|Ddr1|12305|discoidin domain receptor family, member 1	NM_001198833|Ddr1|12305|discoidin domain receptor family, member 1
mm9_v1_chr1_-_170362244_170362272	0.259908	NHLH1,2.p2	BC054376|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK037006|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr13_-_55672471_55672500	0.259452	NHLH1,2.p2	AK155237|Fam193b|212483|family with sequence similarity 193, member B	NM_145382|Fam193b|212483|family with sequence similarity 193, member B
mm9_v1_chr4_+_71862277_71862381	0.258072	NHLH1,2.p2	AK041409|C630043F03Rik|68285|RIKEN cDNA C630043F03 gene	AK043880|C630043F03Rik|68285|RIKEN cDNA C630043F03 gene	AK053841|C630043F03Rik|68285|RIKEN cDNA C630043F03 gene	AK083963|C630043F03Rik|68285|RIKEN cDNA C630043F03 gene	AK039121|C630043F03Rik|68285|RIKEN cDNA C630043F03 gene	AK012513|C630043F03Rik|68285|RIKEN cDNA C630043F03 gene	AK083285|C630043F03Rik|68285|RIKEN cDNA C630043F03 gene	AK042990|C630043F03Rik|68285|RIKEN cDNA C630043F03 gene
mm9_v1_chr2_+_179992126_179992142	0.25805	NHLH1,2.p2	BC027563|Rps21|66481|ribosomal protein S21	AK007850|Rps21|66481|ribosomal protein S21
mm9_v1_chr15_-_91022165_91022189	0.257775	NHLH1,2.p2	BC019187|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2
mm9_v1_chr8_+_3587449_3587449	0.257628	NHLH1,2.p2	NM_001163749|2310057J16Rik|69697|RIKEN cDNA 2310057J16 gene	NM_027171|2310057J16Rik|69697|RIKEN cDNA 2310057J16 gene
mm9_v1_chr2_+_139996381_139996403	0.257407	NHLH1,2.p2	NM_027093|2310003L22Rik|69487|RIKEN cDNA 2310003L22 gene
mm9_v1_chr14_-_31166671_31166671	0.256514	NHLH1,2.p2	AK147415|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit	NM_001083616|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm9_v1_chr8_-_73416578_73416655	0.256459	NHLH1,2.p2	AF380353|Slc5a5|114479|solute carrier family 5 (sodium iodide symporter), member 5	BC137650|Slc5a5|114479|solute carrier family 5 (sodium iodide symporter), member 5	BC137651|Slc5a5|114479|solute carrier family 5 (sodium iodide symporter), member 5	AF235001|Slc5a5|114479|solute carrier family 5 (sodium iodide symporter), member 5	AK046718|Slc5a5|114479|solute carrier family 5 (sodium iodide symporter), member 5	NM_053248|Slc5a5|114479|solute carrier family 5 (sodium iodide symporter), member 5
mm9_v1_chr14_+_61791811_61791874	0.256177	NHLH1,2.p2	AK053626|Sacs|50720|sacsin	AK052467|Sacs|50720|sacsin
mm9_v1_chr1_-_25886551_25886551	0.255484	NHLH1,2.p2	BC099951|Bai3|210933|brain-specific angiogenesis inhibitor 3	NM_175642|Bai3|210933|brain-specific angiogenesis inhibitor 3
mm9_v1_chr9_-_77956833_77956859	0.255327	NHLH1,2.p2	AK077607|Fbxo9|71538|f-box protein 9	NM_001081490|Fbxo9|71538|f-box protein 9
mm9_v1_chr16_-_17891608_17891820	0.255229	NHLH1,2.p2	AK153026|Dgcr2|13356|DiGeorge syndrome critical region gene 2	X95480|Dgcr2|13356|DiGeorge syndrome critical region gene 2	BC062978|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK145495|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK042786|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK161022|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK163903|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK088131|Dgcr2|13356|DiGeorge syndrome critical region gene 2	D78641|Dgcr2|13356|DiGeorge syndrome critical region gene 2	BC060636|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK163872|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK141594|Dgcr2|13356|DiGeorge syndrome critical region gene 2	NM_001109750|Dgcr2|13356|DiGeorge syndrome critical region gene 2	NM_010048|Dgcr2|13356|DiGeorge syndrome critical region gene 2
mm9_v1_chr17_-_46281016_46281172	0.255215	NHLH1,2.p2	AK165820|Rsph9|75564|radial spoke head 9 homolog (Chlamydomonas)	BC019423|Rsph9|75564|radial spoke head 9 homolog (Chlamydomonas)	AK006440|Rsph9|75564|radial spoke head 9 homolog (Chlamydomonas)	NM_029338|Rsph9|75564|radial spoke head 9 homolog (Chlamydomonas)
mm9_v1_chr4_+_122513481_122513506	0.254495	NHLH1,2.p2	AK151107|Ppt1|19063|palmitoyl-protein thioesterase 1	AK152940|Ppt1|19063|palmitoyl-protein thioesterase 1	NM_008917|Ppt1|19063|palmitoyl-protein thioesterase 1	AK152474|Ppt1|19063|palmitoyl-protein thioesterase 1	AK014561|Ppt1|19063|palmitoyl-protein thioesterase 1	AK153106|Ppt1|19063|palmitoyl-protein thioesterase 1	AK153316|Ppt1|19063|palmitoyl-protein thioesterase 1	AK171668|Ppt1|19063|palmitoyl-protein thioesterase 1	AF087568|Ppt1|19063|palmitoyl-protein thioesterase 1	AK169658|Ppt1|19063|palmitoyl-protein thioesterase 1	AK151055|Ppt1|19063|palmitoyl-protein thioesterase 1	AK148314|Ppt1|19063|palmitoyl-protein thioesterase 1	AF326557|Ppt1|19063|palmitoyl-protein thioesterase 1	AF326558|Ppt1|19063|palmitoyl-protein thioesterase 1	AK169579|Ppt1|19063|palmitoyl-protein thioesterase 1
mm9_v1_chr1_+_134373950_134374067	0.254298	NHLH1,2.p2	AK049247|Rbbp5|213464|retinoblastoma binding protein 5	BC057632|Rbbp5|213464|retinoblastoma binding protein 5	AK179022|Rbbp5|213464|retinoblastoma binding protein 5	AK195903|Rbbp5|213464|retinoblastoma binding protein 5
mm9_v1_chr4_-_9596035_9596119	0.253502	NHLH1,2.p2	AF223414|Asph|65973|aspartate-beta-hydroxylase
mm9_v1_chr4_-_133927533_133927693	0.253376	NHLH1,2.p2	AK161915|Extl1|56219|exostoses (multiple)-like 1	AF224461|Extl1|56219|exostoses (multiple)-like 1	BC120890|Extl1|56219|exostoses (multiple)-like 1	BC120891|Extl1|56219|exostoses (multiple)-like 1
mm9_v1_chr9_-_79640876_79641130	0.253339	NHLH1,2.p2	AK178013|Tmem30a|69981|transmembrane protein 30A	AK192822|Tmem30a|69981|transmembrane protein 30A	AK203327|Tmem30a|69981|transmembrane protein 30A	AK200429|Tmem30a|69981|transmembrane protein 30A	BC018367|Tmem30a|69981|transmembrane protein 30A	AK008408|Tmem30a|69981|transmembrane protein 30A	BC018491|Tmem30a|69981|transmembrane protein 30A	AK161096|Tmem30a|69981|transmembrane protein 30A
mm9_v1_chr7_-_52494453_52494466	0.253013	NHLH1,2.p2	AK154466|Cd37|12493|CD37 antigen
mm9_v1_chr5_-_23181737_23181807	0.252632	NHLH1,2.p2	AK014004|Srpk2|20817|serine/arginine-rich protein specific kinase 2	U92456|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr1_-_123224303_123224398	0.25196	NHLH1,2.p2	BC015288|Insig2|72999|insulin induced gene 2	AK152076|Insig2|72999|insulin induced gene 2	AF527631|Insig2|72999|insulin induced gene 2	AY156085|Insig2|72999|insulin induced gene 2	BC023067|Insig2|72999|insulin induced gene 2	NM_133748|Insig2|72999|insulin induced gene 2	BC024411|Insig2|72999|insulin induced gene 2	AK154543|Insig2|72999|insulin induced gene 2	AK165634|Insig2|72999|insulin induced gene 2	AK161256|Insig2|72999|insulin induced gene 2
mm9_v1_chr11_-_77893846_77893871	0.251633	NHLH1,2.p2	AF190730|Eral1|57837|Era (G-protein)-like 1 (E. coli)	AF190731|Eral1|57837|Era (G-protein)-like 1 (E. coli)	BC037603|Eral1|57837|Era (G-protein)-like 1 (E. coli)	AB049389|Eral1|57837|Era (G-protein)-like 1 (E. coli)	BC068271|Eral1|57837|Era (G-protein)-like 1 (E. coli)	AK018664|Eral1|57837|Era (G-protein)-like 1 (E. coli)
mm9_v1_chr9_+_72887524_72887561	0.251227	NHLH1,2.p2	AK009244|2310009A05Rik|66364|RIKEN cDNA 2310009A05 gene	AK003016|2310009A05Rik|66364|RIKEN cDNA 2310009A05 gene	AK019875|5031420N21Rik|78815|RIKEN cDNA 5031420N21 gene	BC037369|2310009A05Rik|66364|RIKEN cDNA 2310009A05 gene
mm9_v1_chr19_-_6077175_6077225	0.251159	NHLH1,2.p2	BC051479|1110014N23Rik|68505|RIKEN cDNA 1110014N23 gene	NM_001081041|1110014N23Rik|68505|RIKEN cDNA 1110014N23 gene	AK137155|1110014N23Rik|68505|RIKEN cDNA 1110014N23 gene	AK146211|1110014N23Rik|68505|RIKEN cDNA 1110014N23 gene	AK014229|1110014N23Rik|68505|RIKEN cDNA 1110014N23 gene	BC118930|1110014N23Rik|68505|RIKEN cDNA 1110014N23 gene	BC118931|1110014N23Rik|68505|RIKEN cDNA 1110014N23 gene	BC034452|1110014N23Rik|68505|RIKEN cDNA 1110014N23 gene
mm9_v1_chr11_-_5661971_5662117	0.251141	NHLH1,2.p2	AK191392|Urgcp|72046|upregulator of cell proliferation	AK129378|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr4_+_133109291_133109339	0.250744	NHLH1,2.p2	AK004930|Nr0b2|23957|nuclear receptor subfamily 0, group B, member 2	BC019540|Nr0b2|23957|nuclear receptor subfamily 0, group B, member 2	NM_011850|Nr0b2|23957|nuclear receptor subfamily 0, group B, member 2	AY360323|Nr0b2|23957|nuclear receptor subfamily 0, group B, member 2	AY360324|Nr0b2|23957|nuclear receptor subfamily 0, group B, member 2
mm9_v1_chr14_+_67852128_67852128	0.250374	NHLH1,2.p2	AK053013|Ebf2|13592|early B-cell factor 2	NM_010095|Ebf2|13592|early B-cell factor 2
mm9_v1_chr7_+_29666674_29666675	0.24987	NHLH1,2.p2	AJ289243|Capn12|60594|calpain 12	NM_001110807|Capn12|60594|calpain 12	BC028751|Capn12|60594|calpain 12
mm9_v1_chr6_-_24614975_24615061	0.248173	NHLH1,2.p2	AK143969|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	AK014104|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	BC058642|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	NM_001167745|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	NM_028459|Wasl|73178|Wiskott-Aldrich syndrome-like (human)
mm9_v1_chr5_-_115791153_115791197	0.24773	NHLH1,2.p2	BC021775|Gatc|384281|glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)	AK034326|Gatc|384281|glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)	NM_029645|Gatc|384281|glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)	AK008080|Gatc|384281|glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)
mm9_v1_chr4_-_135528494_135528534	0.247547	NHLH1,2.p2	AK167478|Lypla2|26394|lysophospholipase 2	AK089112|Lypla2|26394|lysophospholipase 2	AK075590|Lypla2|26394|lysophospholipase 2	AB009653|Lypla2|26394|lysophospholipase 2	NM_011942|Lypla2|26394|lysophospholipase 2	BC068120|Lypla2|26394|lysophospholipase 2
mm9_v1_chr9_-_106794158_106794229	0.247536	NHLH1,2.p2	AK176996|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor
mm9_v1_chr2_+_38853828_38853850	0.247323	NHLH1,2.p2	NM_029687|Wdr38|76646|WD repeat domain 38	AK007246|Wdr38|76646|WD repeat domain 38	BC115629|Wdr38|76646|WD repeat domain 38
mm9_v1_chr1_+_62750471_62750778	0.246542	NHLH1,2.p2	AK153553|Nrp2|18187|neuropilin 2	BC057028|Nrp2|18187|neuropilin 2	BC098200|Nrp2|18187|neuropilin 2	AF483506|Nrp2|18187|neuropilin 2	AF483507|Nrp2|18187|neuropilin 2
mm9_v1_chr12_+_88019649_88019727	0.246412	NHLH1,2.p2	AB284948|Vash1|238328|vasohibin 1	AK090166|Vash1|238328|vasohibin 1	NM_177354|Vash1|238328|vasohibin 1	AK086583|Vash1|238328|vasohibin 1
mm9_v1_chr2_+_22924846_22924986	0.246393	NHLH1,2.p2	AK005001|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	BC061484|Acbd5|74159|acyl-Coenzyme A binding domain containing 5
mm9_v1_chr7_-_129125061_129125233	0.24638	NHLH1,2.p2	AK191299|Cog7|233824|component of oligomeric golgi complex 7	AK030709|Cog7|233824|component of oligomeric golgi complex 7	AK145163|Cog7|233824|component of oligomeric golgi complex 7	AK154693|Cog7|233824|component of oligomeric golgi complex 7	NM_001033318|Cog7|233824|component of oligomeric golgi complex 7	AK172200|Cog7|233824|component of oligomeric golgi complex 7	AK163143|Cog7|233824|component of oligomeric golgi complex 7
mm9_v1_chr18_+_67503217_67503450	0.24599	NHLH1,2.p2	NM_007702|Cidea|12683|cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	AF041376|Cidea|12683|cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	BC096649|Cidea|12683|cell death-inducing DNA fragmentation factor, alpha subunit-like effector A
mm9_v1_chr1_-_94348610_94348663	0.245911	NHLH1,2.p2	AK203226|Ndufa10|67273|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10
mm9_v1_chr5_-_100407805_100407989	0.244753	NHLH1,2.p2	U11273|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	AK135733|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	AK077409|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	BC049098|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_001077265|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_001077266|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_001077267|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_007516|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr8_+_107065187_107065208	0.244153	NHLH1,2.p2	AK144275|Car7|12354|carbonic anhydrase 7
mm9_v1_chr1_+_187278726_187278919	0.244057	NHLH1,2.p2	AK053537|Slc30a10|226781|solute carrier family 30, member 10	NM_001033286|Slc30a10|226781|solute carrier family 30, member 10	BC054548|Slc30a10|226781|solute carrier family 30, member 10	AK136932|Slc30a10|226781|solute carrier family 30, member 10
mm9_v1_chr18_+_37424591_37424651	0.242937	NHLH1,2.p2	BC132112|Pcdhb1|93872|protocadherin beta 1	BC132296|Pcdhb1|93872|protocadherin beta 1	AY013770|Pcdhb1|93872|protocadherin beta 1	NM_053126|Pcdhb1|93872|protocadherin beta 1
mm9_v1_chr10_+_51953390_51953445	0.242584	NHLH1,2.p2	AK016485|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	NM_025705|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	AK157211|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1
mm9_v1_chr9_+_43909852_43909924	0.241781	NHLH1,2.p2	AK053629|C1qtnf5|235312|C1q and tumor necrosis factor related protein 5	NM_001190313|C1qtnf5|235312|C1q and tumor necrosis factor related protein 5	NM_001190314|Mfrp|259172|membrane-type frizzled-related protein	NM_145613|C1qtnf5|235312|C1q and tumor necrosis factor related protein 5	NM_147126|Mfrp|259172|membrane-type frizzled-related protein	AF469650|C1qtnf5|235312|C1q and tumor necrosis factor related protein 5
mm9_v1_chr4_-_129012546_129012617	0.241533	NHLH1,2.p2	U35141|Rbbp4|19646|retinoblastoma binding protein 4	AK166437|Rbbp4|19646|retinoblastoma binding protein 4	AK082419|Rbbp4|19646|retinoblastoma binding protein 4	BC138568|Rbbp4|19646|retinoblastoma binding protein 4	BC138570|Rbbp4|19646|retinoblastoma binding protein 4	NM_009030|Rbbp4|19646|retinoblastoma binding protein 4
mm9_v1_chr6_+_83087016_83087103	0.240914	NHLH1,2.p2	NM_009106|Rtkn|20166|rhotekin	NM_133641|Rtkn|20166|rhotekin	U54638|Rtkn|20166|rhotekin	BC013820|Rtkn|20166|rhotekin
mm9_v1_chr12_+_72075602_72075612	0.240641	NHLH1,2.p2	NM_011184|Psma3|19167|proteasome (prosome, macropain) subunit, alpha type 3
mm9_v1_chr5_+_137960107_137960139	0.239127	NHLH1,2.p2	AY176042|Gigyf1|57330|GRB10 interacting GYF protein 1	NM_031408|Gigyf1|57330|GRB10 interacting GYF protein 1	BC052875|Gigyf1|57330|GRB10 interacting GYF protein 1
mm9_v1_chr5_-_118605391_118605453	0.239054	NHLH1,2.p2	AK034447|Fbxw8|231672|F-box and WD-40 domain protein 8	AK047756|Fbxw8|231672|F-box and WD-40 domain protein 8	BC009095|Fbxw8|231672|F-box and WD-40 domain protein 8	AK047695|Fbxw8|231672|F-box and WD-40 domain protein 8
mm9_v1_chr2_-_30997508_30997548	0.23848	NHLH1,2.p2	AK157135|Fnbp1|14269|formin binding protein 1	AK122308|Fnbp1|14269|formin binding protein 1	NM_001038700|Fnbp1|14269|formin binding protein 1	NM_001177648|Fnbp1|14269|formin binding protein 1	NM_001177649|Fnbp1|14269|formin binding protein 1	NM_019406|Fnbp1|14269|formin binding protein 1
mm9_v1_chr13_-_45097365_45097527	0.238062	NHLH1,2.p2	BC058574|Dtnbp1|94245|dystrobrevin binding protein 1	BC018350|Dtnbp1|94245|dystrobrevin binding protein 1	AJ404859|Dtnbp1|94245|dystrobrevin binding protein 1	AK150306|Dtnbp1|94245|dystrobrevin binding protein 1	NM_025772|Dtnbp1|94245|dystrobrevin binding protein 1	BC048682|Dtnbp1|94245|dystrobrevin binding protein 1
mm9_v1_chr7_-_35015239_35015294	0.237225	NHLH1,2.p2	AK164566|Gpi1|14751|glucose phosphate isomerase 1	AK171956|Gpi1|14751|glucose phosphate isomerase 1	AK159838|Gpi1|14751|glucose phosphate isomerase 1	AK031081|Gpi1|14751|glucose phosphate isomerase 1	BC088995|Gpi1|14751|glucose phosphate isomerase 1	BC157972|Gpi1|14751|glucose phosphate isomerase 1	BC172124|Gpi1|14751|glucose phosphate isomerase 1	AK133827|Gpi1|14751|glucose phosphate isomerase 1	M14220|Gpi1|14751|glucose phosphate isomerase 1	AK137805|Gpi1|14751|glucose phosphate isomerase 1	AK150341|Gpi1|14751|glucose phosphate isomerase 1	AK169681|Gpi1|14751|glucose phosphate isomerase 1	AK134890|Gpi1|14751|glucose phosphate isomerase 1
mm9_v1_chr3_+_93197619_93197620	0.2371	NHLH1,2.p2	AK009453|Rptn|20129|repetin	NM_009100|Rptn|20129|repetin
mm9_v1_chr4_+_49072138_49072207	0.237055	NHLH1,2.p2	AK031416|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AK034251|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AK087439|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AK160897|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene
mm9_v1_chr18_-_24762236_24762282	0.23705	NHLH1,2.p2	AK028976|Slc39a6|106957|solute carrier family 39 (metal ion transporter), member 6
mm9_v1_chr17_+_27792487_27792562	0.236705	NHLH1,2.p2	AK158686|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1
mm9_v1_chr2_+_180234680_180234753	0.236615	NHLH1,2.p2	AB017027|Ntsr1|18216|neurotensin receptor 1	NM_018766|Ntsr1|18216|neurotensin receptor 1	BC087730|Ntsr1|18216|neurotensin receptor 1
mm9_v1_chr15_-_77949709_77949709	0.236313	NHLH1,2.p2	AF077739|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2	NM_007583|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2
mm9_v1_chr14_+_47502637_47502773	0.236164	NHLH1,2.p2	NM_001037221|Samd4|74480|sterile alpha motif domain containing 4	NM_028966|Samd4|74480|sterile alpha motif domain containing 4	AK134243|Samd4|74480|sterile alpha motif domain containing 4	DQ278487|Samd4|74480|sterile alpha motif domain containing 4	AK133470|Samd4|74480|sterile alpha motif domain containing 4	BC145827|Samd4|74480|sterile alpha motif domain containing 4	BC145829|Samd4|74480|sterile alpha motif domain containing 4
mm9_v1_chr11_+_114751354_114751532	0.235922	NHLH1,2.p2	AK045869|Cd300a|217303|CD300A antigen	NM_170758|Cd300a|217303|CD300A antigen	BC139296|Cd300a|217303|CD300A antigen	BC139297|Cd300a|217303|CD300A antigen	AB095675|Cd300a|217303|CD300A antigen
mm9_v1_chr5_+_23919268_23919268	0.23545	NHLH1,2.p2	BC054460|Accn3|171209|amiloride-sensitive cation channel 3	NM_183000|Accn3|171209|amiloride-sensitive cation channel 3
mm9_v1_chr2_-_180773777_180773949	0.234979	NHLH1,2.p2	AY574263|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AF225912|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK083157|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK136886|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	BC053013|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	NM_015730|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK143938|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK034228|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4
mm9_v1_chr6_+_113573980_113574047	0.234832	NHLH1,2.p2	AK159238|Vhl|22346|von Hippel-Lindau tumor suppressor	U12570|Vhl|22346|von Hippel-Lindau tumor suppressor	AK171604|Vhl|22346|von Hippel-Lindau tumor suppressor	AK171264|Vhl|22346|von Hippel-Lindau tumor suppressor	NM_009507|Vhl|22346|von Hippel-Lindau tumor suppressor	S76748|Vhl|22346|von Hippel-Lindau tumor suppressor	BC052417|Vhl|22346|von Hippel-Lindau tumor suppressor	AK161408|Vhl|22346|von Hippel-Lindau tumor suppressor
mm9_v1_chr2_+_29821079_29821243	0.234414	NHLH1,2.p2	NM_001076554|Spna2|20740|spectrin alpha 2	NM_001177667|Spna2|20740|spectrin alpha 2	NM_001177668|Spna2|20740|spectrin alpha 2	AK037683|Spna2|20740|spectrin alpha 2	AK132224|Spna2|20740|spectrin alpha 2	AK147317|Spna2|20740|spectrin alpha 2	AK085063|Spna2|20740|spectrin alpha 2	AK141149|Spna2|20740|spectrin alpha 2	BC049351|Spna2|20740|spectrin alpha 2	BC150941|Spna2|20740|spectrin alpha 2	BC158015|Spna2|20740|spectrin alpha 2	BC172095|Spna2|20740|spectrin alpha 2
mm9_v1_chr6_+_114593104_114593174	0.233692	NHLH1,2.p2	AK007484|Atg7|74244|autophagy-related 7 (yeast)	NM_028835|Atg7|74244|autophagy-related 7 (yeast)	AK166023|Atg7|74244|autophagy-related 7 (yeast)	AK170769|Atg7|74244|autophagy-related 7 (yeast)	AK146992|Atg7|74244|autophagy-related 7 (yeast)	AK161133|Atg7|74244|autophagy-related 7 (yeast)	AK165653|Atg7|74244|autophagy-related 7 (yeast)	AK166074|Atg7|74244|autophagy-related 7 (yeast)	AK171968|Atg7|74244|autophagy-related 7 (yeast)	AK172272|Atg7|74244|autophagy-related 7 (yeast)	BC058597|Atg7|74244|autophagy-related 7 (yeast)
mm9_v1_chr5_+_92566909_92567009	0.233614	NHLH1,2.p2	AK166587|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	BC016069|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	NM_019490|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK156070|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK144638|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK172425|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK168433|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)
mm9_v1_chr17_-_35301810_35301835	0.233153	NHLH1,2.p2	NM_001199044|Prrc2a|53761|proline-rich coiled-coil 2A	NM_020027|Prrc2a|53761|proline-rich coiled-coil 2A
mm9_v1_chr3_+_105508375_105508375	0.232102	NHLH1,2.p2	AK078368|6530418L21Rik|109050|RIKEN cDNA 6530418L21 gene	NM_001163356|6530418L21Rik|109050|RIKEN cDNA 6530418L21 gene
mm9_v1_chr5_+_110528987_110528987	0.231793	NHLH1,2.p2	BC039627|Plcxd1|403178|phosphatidylinositol-specific phospholipase C, X domain containing 1	NM_207279|Plcxd1|403178|phosphatidylinositol-specific phospholipase C, X domain containing 1
mm9_v1_chr11_-_75993074_75993133	0.231704	NHLH1,2.p2	AK166234|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK159454|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK013422|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK010840|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK010900|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK019139|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK008026|Vps53|68299|vacuolar protein sorting 53 (yeast)	BC034371|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK149966|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK150001|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK019408|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK033495|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK167310|Vps53|68299|vacuolar protein sorting 53 (yeast)	NM_026664|Vps53|68299|vacuolar protein sorting 53 (yeast)
mm9_v1_chr12_+_30622876_30622919	0.231693	NHLH1,2.p2	AK142872|Pxdn|69675|peroxidasin homolog (Drosophila)	NM_181395|Pxdn|69675|peroxidasin homolog (Drosophila)	BC150789|Pxdn|69675|peroxidasin homolog (Drosophila)	AK054255|Pxdn|69675|peroxidasin homolog (Drosophila)	AK163597|Pxdn|69675|peroxidasin homolog (Drosophila)
mm9_v1_chr11_+_106612525_106612642	0.231318	NHLH1,2.p2	BC139224|Gm885|380732|predicted gene 885	BC139225|Gm885|380732|predicted gene 885	BC145580|Gm885|380732|predicted gene 885	BC145582|Gm885|380732|predicted gene 885	AK169925|Gm885|380732|predicted gene 885	AB542953|Gm885|380732|predicted gene 885	AK136488|Gm885|380732|predicted gene 885	AK137500|Gm885|380732|predicted gene 885	AK171381|Gm885|380732|predicted gene 885	NM_001033435|Gm885|380732|predicted gene 885	AK151814|Gm885|380732|predicted gene 885	AK170947|Gm885|380732|predicted gene 885	AK153506|Gm885|380732|predicted gene 885
mm9_v1_chr17_+_33130067_33130141	0.22996	NHLH1,2.p2	AK050612|Zfp952|240067|zinc finger protein 952	BC057593|Zfp952|240067|zinc finger protein 952	NM_001045559|Zfp952|240067|zinc finger protein 952	BC051011|Zfp952|240067|zinc finger protein 952
mm9_v1_chr5_-_97885939_97886039	0.229902	NHLH1,2.p2	AK075761|Gk2|14626|glycerol kinase 2	BC061147|Gk2|14626|glycerol kinase 2	AF117734|Gk2|14626|glycerol kinase 2	NM_010294|Gk2|14626|glycerol kinase 2	BC050764|Gk2|14626|glycerol kinase 2
mm9_v1_chr10_+_39452169_39452280	0.229724	NHLH1,2.p2	AF083464|Rev3l|19714|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)	AF083465|Rev3l|19714|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)
mm9_v1_chr6_+_88852244_88852316	0.229257	NHLH1,2.p2	NM_011906|Tpra1|24100|transmembrane protein, adipocyte asscociated 1	AK155116|Tpra1|24100|transmembrane protein, adipocyte asscociated 1	AK172045|Tpra1|24100|transmembrane protein, adipocyte asscociated 1
mm9_v1_chr8_+_96703174_96703210	0.228624	NHLH1,2.p2	S62785|Mt1|17748|metallothionein 1
mm9_v1_chr8_-_106966899_106966946	0.227553	NHLH1,2.p2	BC058645|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK050575|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	NM_001013380|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2
mm9_v1_chr10_-_80841099_80841253	0.226968	NHLH1,2.p2	AF083809|Fzr1|56371|fizzy/cell division cycle 20 related 1 (Drosophila)	NM_019757|Fzr1|56371|fizzy/cell division cycle 20 related 1 (Drosophila)	AK081476|Fzr1|56371|fizzy/cell division cycle 20 related 1 (Drosophila)	AK163951|Fzr1|56371|fizzy/cell division cycle 20 related 1 (Drosophila)	AK083686|Fzr1|56371|fizzy/cell division cycle 20 related 1 (Drosophila)	AK155370|Fzr1|56371|fizzy/cell division cycle 20 related 1 (Drosophila)	AK051993|Fzr1|56371|fizzy/cell division cycle 20 related 1 (Drosophila)	BC006616|Fzr1|56371|fizzy/cell division cycle 20 related 1 (Drosophila)	AK154822|Fzr1|56371|fizzy/cell division cycle 20 related 1 (Drosophila)	AK172679|Fzr1|56371|fizzy/cell division cycle 20 related 1 (Drosophila)
mm9_v1_chr8_+_24249481_24249576	0.226344	NHLH1,2.p2	U73972|Ank1|11733|ankyrin 1, erythroid	BC061219|Ank1|11733|ankyrin 1, erythroid	AK134267|Ank1|11733|ankyrin 1, erythroid
mm9_v1_chr5_+_31179203_31179435	0.225796	NHLH1,2.p2	AK004170|Tmem214|68796|transmembrane protein 214	AK212116|Tmem214|68796|transmembrane protein 214
mm9_v1_chr1_+_87942437_87942543	0.225106	NHLH1,2.p2	BC137675|2810459M11Rik|72792|RIKEN cDNA 2810459M11 gene	BC144821|2810459M11Rik|72792|RIKEN cDNA 2810459M11 gene	NM_001144992|2810459M11Rik|72792|RIKEN cDNA 2810459M11 gene	NM_001144993|2810459M11Rik|72792|RIKEN cDNA 2810459M11 gene
mm9_v1_chr6_-_148160507_148160628	0.225054	NHLH1,2.p2	BC026558|Ergic2|67456|ERGIC and golgi 2	BC006895|Ergic2|67456|ERGIC and golgi 2	AK007498|Ergic2|67456|ERGIC and golgi 2	AK010529|Ergic2|67456|ERGIC and golgi 2	AK030045|Ergic2|67456|ERGIC and golgi 2	AK086727|Ergic2|67456|ERGIC and golgi 2	AK009483|Ergic2|67456|ERGIC and golgi 2	BC018188|Ergic2|67456|ERGIC and golgi 2	AK167391|Ergic2|67456|ERGIC and golgi 2	AK008971|Ergic2|67456|ERGIC and golgi 2	AK014413|Ergic2|67456|ERGIC and golgi 2	AK004661|Ergic2|67456|ERGIC and golgi 2	AK017876|Ergic2|67456|ERGIC and golgi 2	BC064749|Ergic2|67456|ERGIC and golgi 2	AK162267|Ergic2|67456|ERGIC and golgi 2
mm9_v1_chr7_-_16844541_16844615	0.224547	NHLH1,2.p2	AK158027|C5ar1|12273|complement component 5a receptor 1
mm9_v1_chr9_-_98936108_98936133	0.224521	NHLH1,2.p2	BC114986|Gm1123|382097|predicted gene 1123	BC115956|Gm1123|382097|predicted gene 1123	NM_001080776|Gm1123|382097|predicted gene 1123	AB262662|Gm1123|382097|predicted gene 1123
mm9_v1_chr9_+_64809499_64809621	0.224293	NHLH1,2.p2	AK168222|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene
mm9_v1_chr15_-_101573522_101573539	0.224227	NHLH1,2.p2	BC125346|Krt71|56735|keratin 71	BC125348|Krt71|56735|keratin 71	AB033744|Krt71|56735|keratin 71	AB100413|Krt71|56735|keratin 71	AY033497|Krt71|56735|keratin 71	NM_019956|Krt71|56735|keratin 71	AK003610|Krt71|56735|keratin 71	AK003704|Krt71|56735|keratin 71
mm9_v1_chr4_-_151665770_151665770	0.224038	NHLH1,2.p2	AK090218|Hes3|15207|hairy and enhancer of split 3 (Drosophila)	NM_008237|Hes3|15207|hairy and enhancer of split 3 (Drosophila)
mm9_v1_chrX_+_53627743_53627791	0.223918	NHLH1,2.p2	AK078069|Ncrna00086|320237|non-protein coding RNA 86	AK139449|Ncrna00086|320237|non-protein coding RNA 86	BC052359|Ncrna00086|320237|non-protein coding RNA 86
mm9_v1_chr7_+_3597085_3597155	0.223837	NHLH1,2.p2	BC060684|Cnot3|232791|CCR4-NOT transcription complex, subunit 3	BC141041|Cnot3|232791|CCR4-NOT transcription complex, subunit 3	BC053437|Cnot3|232791|CCR4-NOT transcription complex, subunit 3
mm9_v1_chr7_+_51751957_51752057	0.223697	NHLH1,2.p2	NM_028169|Fam71e1|75538|family with sequence similarity 71, member E1	AK018715|Fam71e1|75538|family with sequence similarity 71, member E1	BC130017|Fam71e1|75538|family with sequence similarity 71, member E1	AK006229|Fam71e1|75538|family with sequence similarity 71, member E1	BC100470|Fam71e1|75538|family with sequence similarity 71, member E1	BC049752|Fam71e1|75538|family with sequence similarity 71, member E1	AK006222|Fam71e1|75538|family with sequence similarity 71, member E1	AB473729|Fam71e1|75538|family with sequence similarity 71, member E1
mm9_v1_chr7_-_117103903_117104016	0.223423	NHLH1,2.p2	AJ245569|Dennd5a|19347|DENN/MADD domain containing 5A	BC060230|Dennd5a|19347|DENN/MADD domain containing 5A	NM_021494|Dennd5a|19347|DENN/MADD domain containing 5A
mm9_v1_chr15_+_99055291_99055406	0.223029	NHLH1,2.p2	BC141013|Kcnh3|16512|potassium voltage-gated channel, subfamily H (eag-related), member 3	BC145145|Kcnh3|16512|potassium voltage-gated channel, subfamily H (eag-related), member 3	AY380579|Kcnh3|16512|potassium voltage-gated channel, subfamily H (eag-related), member 3	NM_010601|Kcnh3|16512|potassium voltage-gated channel, subfamily H (eag-related), member 3
mm9_v1_chr17_+_71596413_71596481	0.222609	NHLH1,2.p2	AK021389|Lpin2|64898|lipin 2
mm9_v1_chr9_-_86775488_86775559	0.222491	NHLH1,2.p2	AK051176|Snap91|20616|synaptosomal-associated protein 91
mm9_v1_chr1_-_95375372_95375387	0.22224	NHLH1,2.p2	BC027779|Hdlbp|110611|high density lipoprotein (HDL) binding protein	BC027788|Hdlbp|110611|high density lipoprotein (HDL) binding protein	NM_133808|Hdlbp|110611|high density lipoprotein (HDL) binding protein
mm9_v1_chrX_+_9424072_9424114	0.222194	NHLH1,2.p2	AK006788|1700054O13Rik|67334|RIKEN cDNA 1700054O13 gene	NM_026096|1700054O13Rik|67334|RIKEN cDNA 1700054O13 gene	AK006319|1700054O13Rik|67334|RIKEN cDNA 1700054O13 gene	BC059721|1700054O13Rik|67334|RIKEN cDNA 1700054O13 gene	BC049569|1700054O13Rik|67334|RIKEN cDNA 1700054O13 gene
mm9_v1_chr16_-_17530777_17530885	0.22215	NHLH1,2.p2	AK007329|Thap7|69009|THAP domain containing 7
mm9_v1_chr11_-_100276112_100276132	0.222005	NHLH1,2.p2	BC031856|Leprel4|66180|leprecan-like 4	NM_176830|Leprel4|66180|leprecan-like 4
mm9_v1_chr11_-_54063400_54063400	0.221291	NHLH1,2.p2	AK053196|Csf2|12981|colony stimulating factor 2 (granulocyte-macrophage)	NM_009969|Csf2|12981|colony stimulating factor 2 (granulocyte-macrophage)
mm9_v1_chr10_+_81106380_81106406	0.219532	NHLH1,2.p2	AK017778|Ankrd24|70615|ankyrin repeat domain 24
mm9_v1_chr19_-_41818345_41818345	0.21951	NHLH1,2.p2	NM_015748|Slit1|20562|slit homolog 1 (Drosophila)
mm9_v1_chr10_-_8238569_8238650	0.2192	NHLH1,2.p2	AK086181|Ust|338362|uronyl-2-sulfotransferase	AK147850|Ust|338362|uronyl-2-sulfotransferase	NM_177387|Ust|338362|uronyl-2-sulfotransferase
mm9_v1_chr5_-_113592211_113592370	0.219029	NHLH1,2.p2	BC147338|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene	BC147339|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene	AK041243|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene	AK171617|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene	NM_172884|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene	AK154484|2900026A02Rik|243219|RIKEN cDNA 2900026A02 gene
mm9_v1_chr1_-_192803077_192803174	0.218323	NHLH1,2.p2	BC024141|Vash2|226841|vasohibin 2	AK163193|Vash2|226841|vasohibin 2	AK045261|Vash2|226841|vasohibin 2	AK078596|Vash2|226841|vasohibin 2
mm9_v1_chr6_-_72383243_72383360	0.218068	NHLH1,2.p2	AK191201|Mat2a|232087|methionine adenosyltransferase II, alpha	AK191379|Mat2a|232087|methionine adenosyltransferase II, alpha	AK192240|Mat2a|232087|methionine adenosyltransferase II, alpha	AK195580|Mat2a|232087|methionine adenosyltransferase II, alpha	AK196623|Mat2a|232087|methionine adenosyltransferase II, alpha	AK197103|Mat2a|232087|methionine adenosyltransferase II, alpha	AK200816|Mat2a|232087|methionine adenosyltransferase II, alpha	AK203805|Mat2a|232087|methionine adenosyltransferase II, alpha	AK203913|Mat2a|232087|methionine adenosyltransferase II, alpha	AK201922|Mat2a|232087|methionine adenosyltransferase II, alpha
mm9_v1_chr6_+_48854984_48854984	0.217754	NHLH1,2.p2	AK146078|Abp1|76507|amiloride binding protein 1 (amine oxidase, copper-containing)	NM_001161621|Abp1|76507|amiloride binding protein 1 (amine oxidase, copper-containing)	NM_001161622|Abp1|76507|amiloride binding protein 1 (amine oxidase, copper-containing)
mm9_v1_chr3_-_151929210_151929283	0.217218	NHLH1,2.p2	AK136102|Nexn|68810|nexilin	BC052878|Nexn|68810|nexilin	AK163414|Nexn|68810|nexilin	NM_199465|Nexn|68810|nexilin
mm9_v1_chr13_-_67500685_67500702	0.217043	NHLH1,2.p2	AK083314|Zfp429|72807|zinc finger protein 429	BC046484|Zfp429|72807|zinc finger protein 429	NM_001080941|Zfp429|72807|zinc finger protein 429
mm9_v1_chr4_+_148892231_148892432	0.216946	NHLH1,2.p2	AK036181|Ctnnbip1|67087|catenin beta interacting protein 1	NM_023465|Ctnnbip1|67087|catenin beta interacting protein 1	AK048258|Ctnnbip1|67087|catenin beta interacting protein 1	BC038253|Ctnnbip1|67087|catenin beta interacting protein 1	BC018436|Ctnnbip1|67087|catenin beta interacting protein 1	AB021261|Ctnnbip1|67087|catenin beta interacting protein 1
mm9_v1_chr5_+_102910409_102910555	0.216616	NHLH1,2.p2	AK080986|Arhgap24|231532|Rho GTPase activating protein 24	NM_029270|Arhgap24|231532|Rho GTPase activating protein 24	NM_146161|Arhgap24|231532|Rho GTPase activating protein 24	AK052395|Arhgap24|231532|Rho GTPase activating protein 24
mm9_v1_chr11_+_77845840_77845855	0.215697	NHLH1,2.p2	AK011939|Dhrs13|70451|dehydrogenase/reductase (SDR family) member 13	BC115881|Dhrs13|70451|dehydrogenase/reductase (SDR family) member 13	AK046465|Dhrs13|70451|dehydrogenase/reductase (SDR family) member 13
mm9_v1_chr9_+_57351830_57351839	0.215417	NHLH1,2.p2	AK140177|Rpp25|102614|ribonuclease P 25 subunit (human)	AK082822|Rpp25|102614|ribonuclease P 25 subunit (human)
mm9_v1_chr17_+_24551509_24551671	0.215077	NHLH1,2.p2	AK143213|Rnps1|19826|ribonucleic acid binding protein S1	AK011475|Rnps1|19826|ribonucleic acid binding protein S1	NM_001080127|Rnps1|19826|ribonucleic acid binding protein S1	NM_001080128|Rnps1|19826|ribonucleic acid binding protein S1	NM_009070|Rnps1|19826|ribonucleic acid binding protein S1	AK146443|Rnps1|19826|ribonucleic acid binding protein S1	AK151150|Rnps1|19826|ribonucleic acid binding protein S1	BC002061|Rnps1|19826|ribonucleic acid binding protein S1	AK165905|Rnps1|19826|ribonucleic acid binding protein S1	AK164151|Rnps1|19826|ribonucleic acid binding protein S1
mm9_v1_chr7_-_128217980_128218068	0.214971	NHLH1,2.p2	AK156382|Igsf6|80719|immunoglobulin superfamily, member 6	AK040569|Igsf6|80719|immunoglobulin superfamily, member 6	AK163058|Igsf6|80719|immunoglobulin superfamily, member 6	AK151417|Igsf6|80719|immunoglobulin superfamily, member 6	AK152186|Igsf6|80719|immunoglobulin superfamily, member 6	BC057951|Igsf6|80719|immunoglobulin superfamily, member 6	AJ278575|Igsf6|80719|immunoglobulin superfamily, member 6	NM_030691|Igsf6|80719|immunoglobulin superfamily, member 6
mm9_v1_chr10_+_62442975_62442986	0.214823	NHLH1,2.p2	AK083205|Rufy2|70432|RUN and FYVE domain-containing 2
mm9_v1_chr4_-_42039325_42039326	0.214592	NHLH1,2.p2	NM_001099348|Gm13305|100042555|predicted gene 13305	NM_001100596|Gm2002|100038993|predicted gene 2002	NM_010550|Il11ra2|16158|interleukin 11 receptor, alpha chain 2	U69491|Il11ra2|16158|interleukin 11 receptor, alpha chain 2	X98519|Il11ra2|16158|interleukin 11 receptor, alpha chain 2
mm9_v1_chr7_-_106501620_106501629	0.214481	NHLH1,2.p2	BC085143|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	J05609|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK029080|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK031457|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK076474|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK077660|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK077992|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK079460|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK086519|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK086523|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK089993|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK090103|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK159697|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK159998|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK166000|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK167403|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK169422|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK168442|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1
mm9_v1_chr4_-_14753720_14753733	0.213123	NHLH1,2.p2	NM_152812|Otud6b|72201|OTU domain containing 6B
mm9_v1_chr19_-_45892512_45892542	0.213055	NHLH1,2.p2	
mm9_v1_chr15_-_12669677_12669687	0.212935	NHLH1,2.p2	AK159017|Pdzd2|68070|PDZ domain containing 2
mm9_v1_chr7_+_105805420_105805457	0.212616	NHLH1,2.p2	
mm9_v1_chr11_+_120358702_120358712	0.212289	NHLH1,2.p2	
mm9_v1_chr5_-_144090853_144090920	0.211364	NHLH1,2.p2	AK156167|Zdhhc4|72881|zinc finger, DHHC domain containing 4	BC019523|Zdhhc4|72881|zinc finger, DHHC domain containing 4	AK013609|Zdhhc4|72881|zinc finger, DHHC domain containing 4	NM_028379|Zdhhc4|72881|zinc finger, DHHC domain containing 4
mm9_v1_chr7_-_72301074_72301128	0.211359	NHLH1,2.p2	AK172974|Fam189a1|70638|family with sequence similarity 189, member A1
mm9_v1_chr9_+_109954534_109954609	0.210718	NHLH1,2.p2	AK138416|Mtap4|17758|microtubule-associated protein 4	AK146790|Mtap4|17758|microtubule-associated protein 4	BC042645|Mtap4|17758|microtubule-associated protein 4	AK134996|Mtap4|17758|microtubule-associated protein 4
mm9_v1_chr12_+_85455277_85455306	0.210073	NHLH1,2.p2	NM_028821|Dnalc1|105000|dynein, axonemal, light chain 1
mm9_v1_chr5_-_31210160_31210170	0.209501	NHLH1,2.p2	NM_024460|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)
mm9_v1_chr13_-_117099629_117099895	0.209097	NHLH1,2.p2	AB104633|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AJ132765|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132609|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK044406|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK090263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK143052|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	NM_021459|Isl1|16392|ISL1 transcription factor, LIM/homeodomain
mm9_v1_chr5_-_92391867_92391880	0.207976	NHLH1,2.p2	BC023138|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AK078397|Rchy1|68098|ring finger and CHY zinc finger domain containing 1
mm9_v1_chr17_-_9862538_9862568	0.207866	NHLH1,2.p2	BC113177|Pabpc6|67543|poly(A) binding protein, cytoplasmic 6	AK029765|Pabpc6|67543|poly(A) binding protein, cytoplasmic 6	AK016578|Pabpc6|67543|poly(A) binding protein, cytoplasmic 6	NM_001163836|Pabpc6|67543|poly(A) binding protein, cytoplasmic 6
mm9_v1_chr1_-_94336403_94336417	0.207533	NHLH1,2.p2	AK184537|Ndufa10|67273|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10
mm9_v1_chr12_+_114047301_114047353	0.207258	NHLH1,2.p2	AK077390|BC022687|217887|cDNA sequence BC022687
mm9_v1_chr11_-_79344055_79344121	0.207004	NHLH1,2.p2	AK046407|Evi2a|14017|ecotropic viral integration site 2a	BC038124|Evi2a|14017|ecotropic viral integration site 2a	AK170527|Evi2a|14017|ecotropic viral integration site 2a	AK005353|Evi2a|14017|ecotropic viral integration site 2a	NM_146023|Evi2b|216984|ecotropic viral integration site 2b	NM_001033711|Evi2a|14017|ecotropic viral integration site 2a	NM_010161|Evi2a|14017|ecotropic viral integration site 2a
mm9_v1_chr16_-_10792092_10792197	0.206774	NHLH1,2.p2	M16456|Prm2|19119|protamine 2	M27501|Prm2|19119|protamine 2	NM_008933|Prm2|19119|protamine 2	X14004|Prm2|19119|protamine 2	BC049612|Prm2|19119|protamine 2	AK005729|Prm2|19119|protamine 2
mm9_v1_chr11_+_101107691_101107706	0.206774	NHLH1,2.p2	BC036348|Vps25|28084|vacuolar protein sorting 25 (yeast)
mm9_v1_chr10_+_80165400_80165511	0.206634	NHLH1,2.p2	NM_027829|Izumo4|71564|IZUMO family member 4	BC057953|Izumo4|71564|IZUMO family member 4
mm9_v1_chr8_+_63111621_63111675	0.206571	NHLH1,2.p2	AK089654|Mfap3l|71306|microfibrillar-associated protein 3-like	NM_027756|Mfap3l|71306|microfibrillar-associated protein 3-like	BC095950|Mfap3l|71306|microfibrillar-associated protein 3-like
mm9_v1_chr9_+_22280158_22280205	0.20575	NHLH1,2.p2	BC046426|Bbs9|319845|Bardet-Biedl syndrome 9 (human)	NM_178415|Bbs9|319845|Bardet-Biedl syndrome 9 (human)	NM_181316|Bbs9|319845|Bardet-Biedl syndrome 9 (human)	AK166297|Bbs9|319845|Bardet-Biedl syndrome 9 (human)	AK086114|Bbs9|319845|Bardet-Biedl syndrome 9 (human)	AK144730|Bbs9|319845|Bardet-Biedl syndrome 9 (human)	AK028200|Bbs9|319845|Bardet-Biedl syndrome 9 (human)
mm9_v1_chr10_+_116018336_116018351	0.205252	NHLH1,2.p2	AK077360|5330438D12Rik|327824|RIKEN cDNA 5330438D12 gene
mm9_v1_chr17_-_35301791_35301808	0.205122	NHLH1,2.p2	BC052630|Prrc2a|53761|proline-rich coiled-coil 2A	BC053522|Prrc2a|53761|proline-rich coiled-coil 2A
mm9_v1_chr2_-_124949149_124949396	0.205073	NHLH1,2.p2	BC060946|Myef2|17876|myelin basic protein expression factor 2, repressor	AK129336|Myef2|17876|myelin basic protein expression factor 2, repressor	AK142363|Myef2|17876|myelin basic protein expression factor 2, repressor	AK143230|Myef2|17876|myelin basic protein expression factor 2, repressor	AK048404|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_001162417|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_001162418|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_010852|Myef2|17876|myelin basic protein expression factor 2, repressor	AK012133|Myef2|17876|myelin basic protein expression factor 2, repressor
mm9_v1_chr11_-_98448496_98448592	0.205069	NHLH1,2.p2	BC046594|Ormdl3|66612|ORM1-like 3 (S. cerevisiae)	AK087497|Ormdl3|66612|ORM1-like 3 (S. cerevisiae)	AK012718|Ormdl3|66612|ORM1-like 3 (S. cerevisiae)	AK154085|Ormdl3|66612|ORM1-like 3 (S. cerevisiae)	AK009621|Ormdl3|66612|ORM1-like 3 (S. cerevisiae)	NM_025661|Ormdl3|66612|ORM1-like 3 (S. cerevisiae)
mm9_v1_chr7_+_35905996_35906277	0.204302	NHLH1,2.p2	BC106174|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	AK160443|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha
mm9_v1_chr9_+_69860349_69860394	0.203901	NHLH1,2.p2	AK165466|Gtf2a2|235459|general transcription factor II A, 2	NM_001039519|Gtf2a2|235459|general transcription factor II A, 2	AK164255|Gtf2a2|235459|general transcription factor II A, 2	BC028551|Gtf2a2|235459|general transcription factor II A, 2	AK050621|Gtf2a2|235459|general transcription factor II A, 2	AK139783|Gtf2a2|235459|general transcription factor II A, 2	AK169778|Gtf2a2|235459|general transcription factor II A, 2
mm9_v1_chr2_+_130121674_130121674	0.203895	NHLH1,2.p2	AF387630|Ebf4|228598|early B-cell factor 4	AF387631|Ebf4|228598|early B-cell factor 4	AF387632|Ebf4|228598|early B-cell factor 4	AF387633|Ebf4|228598|early B-cell factor 4	AF387634|Ebf4|228598|early B-cell factor 4	BC138119|Ebf4|228598|early B-cell factor 4	BC145155|Ebf4|228598|early B-cell factor 4	NM_001110513|Ebf4|228598|early B-cell factor 4
mm9_v1_chr2_+_32442620_32442737	0.203704	NHLH1,2.p2	AK153036|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	BC044734|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	AK179544|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
mm9_v1_chr13_-_25112189_25112247	0.203418	NHLH1,2.p2	NM_001013389|Mrs2|380836|MRS2 magnesium homeostasis factor homolog (S. cerevisiae)
mm9_v1_chr7_-_106501584_106501610	0.203344	NHLH1,2.p2	AK168870|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	X60676|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1
mm9_v1_chr19_+_6164434_6164457	0.203064	NHLH1,2.p2	AK150133|Batf2|74481|basic leucine zipper transcription factor, ATF-like 2	AK171828|Batf2|74481|basic leucine zipper transcription factor, ATF-like 2	BC024521|Batf2|74481|basic leucine zipper transcription factor, ATF-like 2	NM_028967|Batf2|74481|basic leucine zipper transcription factor, ATF-like 2
mm9_v1_chr7_+_133968166_133968166	0.202985	NHLH1,2.p2	BC055444|Fam57b|68952|family with sequence similarity 57, member B	NM_001146347|Fam57b|68952|family with sequence similarity 57, member B
mm9_v1_chr7_+_59134514_59134648	0.202846	NHLH1,2.p2	NM_008087|Gas2|14453|growth arrest specific 2	M21828|Gas2|14453|growth arrest specific 2
mm9_v1_chr7_-_111291762_111291785	0.202523	NHLH1,2.p2	BC100419|Ubqln3|244178|ubiquilin 3	AK077072|Ubqln3|244178|ubiquilin 3	NM_198623|Ubqln3|244178|ubiquilin 3
mm9_v1_chr7_-_53355395_53355639	0.202482	NHLH1,2.p2	D50581|Kcnj11|16514|potassium inwardly rectifying channel, subfamily J, member 11	U73626|Kcnj11|16514|potassium inwardly rectifying channel, subfamily J, member 11	BC052731|Kcnj11|16514|potassium inwardly rectifying channel, subfamily J, member 11	BC057006|Kcnj11|16514|potassium inwardly rectifying channel, subfamily J, member 11	NM_010602|Kcnj11|16514|potassium inwardly rectifying channel, subfamily J, member 11
mm9_v1_chr16_+_4835415_4835415	0.202346	NHLH1,2.p2	AK133365|4930562C15Rik|78809|RIKEN cDNA 4930562C15 gene	NM_030192|4930562C15Rik|78809|RIKEN cDNA 4930562C15 gene
mm9_v1_chr13_+_55724355_55724380	0.202278	NHLH1,2.p2	AK002895|Caml|12328|calcium modulating ligand	NM_007596|Caml|12328|calcium modulating ligand
mm9_v1_chr17_-_46464924_46464971	0.202069	NHLH1,2.p2	BC060644|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	BC150818|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	AK133240|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	AK170600|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	AK164902|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	AK170539|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	AK171535|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	AF417121|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	NM_170680|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10
mm9_v1_chr2_+_34627607_34627658	0.201204	NHLH1,2.p2	NM_001163434|Hspa5|14828|heat shock protein 5	NM_022310|Hspa5|14828|heat shock protein 5	AK077463|Hspa5|14828|heat shock protein 5	AK146647|Hspa5|14828|heat shock protein 5	AK148539|Hspa5|14828|heat shock protein 5	AK149447|Hspa5|14828|heat shock protein 5	AK151647|Hspa5|14828|heat shock protein 5	AK151806|Hspa5|14828|heat shock protein 5	AK152958|Hspa5|14828|heat shock protein 5	AK160821|Hspa5|14828|heat shock protein 5	AK168012|Hspa5|14828|heat shock protein 5	AK169034|Hspa5|14828|heat shock protein 5	AK004578|Hspa5|14828|heat shock protein 5	AK076079|Hspa5|14828|heat shock protein 5	AK144650|Hspa5|14828|heat shock protein 5	AK144742|Hspa5|14828|heat shock protein 5	AK152020|Hspa5|14828|heat shock protein 5	AK159719|Hspa5|14828|heat shock protein 5	AK166207|Hspa5|14828|heat shock protein 5	AK166739|Hspa5|14828|heat shock protein 5	AK167011|Hspa5|14828|heat shock protein 5	AK152521|Hspa5|14828|heat shock protein 5	AK168230|Hspa5|14828|heat shock protein 5	BC050927|Hspa5|14828|heat shock protein 5
mm9_v1_chr12_+_83270349_83270493	0.200235	NHLH1,2.p2	AK147591|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1	BC095958|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1	AK078420|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1
mm9_v1_chr9_-_106588220_106588290	0.198853	NHLH1,2.p2	BC006608|Tex264|21767|testis expressed gene 264	AK003113|Tex264|21767|testis expressed gene 264	AK159046|Tex264|21767|testis expressed gene 264	NM_001081654|Tex264|21767|testis expressed gene 264
mm9_v1_chr1_-_37486768_37486947	0.198835	NHLH1,2.p2	AK177444|6330578E17Rik|76178|RIKEN cDNA 6330578E17 gene	AK218336|6330578E17Rik|76178|RIKEN cDNA 6330578E17 gene	AK018255|6330578E17Rik|76178|RIKEN cDNA 6330578E17 gene	AK040907|6330578E17Rik|76178|RIKEN cDNA 6330578E17 gene	AK050432|6330578E17Rik|76178|RIKEN cDNA 6330578E17 gene	BC002137|6330578E17Rik|76178|RIKEN cDNA 6330578E17 gene	AK166651|6330578E17Rik|76178|RIKEN cDNA 6330578E17 gene	AK169639|6330578E17Rik|76178|RIKEN cDNA 6330578E17 gene	NM_198006|6330578E17Rik|76178|RIKEN cDNA 6330578E17 gene
mm9_v1_chr9_-_106789330_106789418	0.198547	NHLH1,2.p2	BC078452|Rbm15b|109095|RNA binding motif protein 15B	NM_175402|Rbm15b|109095|RNA binding motif protein 15B	BC052180|Rbm15b|109095|RNA binding motif protein 15B
mm9_v1_chr7_-_134160864_134160869	0.198515	NHLH1,2.p2	BC003932|2900092E17Rik|67278|RIKEN cDNA 2900092E17 gene	NM_030240|2900092E17Rik|67278|RIKEN cDNA 2900092E17 gene
mm9_v1_chr6_-_86683330_86683393	0.19851	NHLH1,2.p2	BC054767|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AK146964|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AK004716|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AK155238|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	NM_011818|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)
mm9_v1_chr8_+_108129115_108129214	0.198371	NHLH1,2.p2	NM_001081241|Fam65a|75687|family with sequence similarity 65, member A	AK122573|Fam65a|75687|family with sequence similarity 65, member A	AK052316|Fam65a|75687|family with sequence similarity 65, member A	BC079880|Fam65a|75687|family with sequence similarity 65, member A
mm9_v1_chr5_-_33617631_33617689	0.197999	NHLH1,2.p2	AK160658|Ctbp1|13016|C-terminal binding protein 1	AK171650|Ctbp1|13016|C-terminal binding protein 1	NM_001198859|Ctbp1|13016|C-terminal binding protein 1	NM_001198860|Ctbp1|13016|C-terminal binding protein 1	NM_001198861|Ctbp1|13016|C-terminal binding protein 1	NM_013502|Ctbp1|13016|C-terminal binding protein 1
mm9_v1_chr7_-_69565024_69565050	0.197967	NHLH1,2.p2	BC054771|Mkrn3|22652|makorin, ring finger protein, 3	NM_011746|Mkrn3|22652|makorin, ring finger protein, 3	AK134870|Mkrn3|22652|makorin, ring finger protein, 3
mm9_v1_chr19_-_29122186_29122463	0.197711	NHLH1,2.p2	AB020203|Ak3|56248|adenylate kinase 3	AK031631|Ak3|56248|adenylate kinase 3	BC024871|Ak3|56248|adenylate kinase 3	NM_021299|Ak3|56248|adenylate kinase 3	BC016432|Ak3|56248|adenylate kinase 3	AK004864|Ak3|56248|adenylate kinase 3	AK008681|Ak3|56248|adenylate kinase 3	BC058191|Ak3|56248|adenylate kinase 3	BC019174|Ak3|56248|adenylate kinase 3	AK007618|Ak3|56248|adenylate kinase 3	AK089027|Ak3|56248|adenylate kinase 3	AK005194|Ak3|56248|adenylate kinase 3	AK149996|Ak3|56248|adenylate kinase 3	AK053644|Ak3|56248|adenylate kinase 3	AK147060|Ak3|56248|adenylate kinase 3
mm9_v1_chr14_+_58691522_58691522	0.196646	NHLH1,2.p2	AK158782|Fgf9|14180|fibroblast growth factor 9	NM_013518|Fgf9|14180|fibroblast growth factor 9
mm9_v1_chr4_+_137773173_137773219	0.196469	NHLH1,2.p2	AK169740|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK161084|Hp1bp3|15441|heterochromatin protein 1, binding protein 3
mm9_v1_chr14_+_48092244_48092299	0.196461	NHLH1,2.p2	BC049155|Fbxo34|78938|F-box protein 34	AK013711|Fbxo34|78938|F-box protein 34
mm9_v1_chr17_-_33084274_33084351	0.196295	NHLH1,2.p2	AF233643|Cyp4f13|170716|cytochrome P450, family 4, subfamily f, polypeptide 13	NM_130882|Cyp4f13|170716|cytochrome P450, family 4, subfamily f, polypeptide 13	BC003954|Cyp4f13|170716|cytochrome P450, family 4, subfamily f, polypeptide 13	BC058330|Cyp4f13|170716|cytochrome P450, family 4, subfamily f, polypeptide 13	AK085008|Cyp4f13|170716|cytochrome P450, family 4, subfamily f, polypeptide 13
mm9_v1_chr15_+_94459521_94459680	0.195671	NHLH1,2.p2	AK047437|Tmem117|320709|transmembrane protein 117	NM_178789|Tmem117|320709|transmembrane protein 117	AK048597|Tmem117|320709|transmembrane protein 117	AK034024|Tmem117|320709|transmembrane protein 117	BC051178|Tmem117|320709|transmembrane protein 117	BC054070|Tmem117|320709|transmembrane protein 117
mm9_v1_chr13_+_30428224_30428325	0.195605	NHLH1,2.p2	NM_177322|Agtr1a|11607|angiotensin II receptor, type 1a	AK007990|Agtr1a|11607|angiotensin II receptor, type 1a	BC036175|Agtr1a|11607|angiotensin II receptor, type 1a
mm9_v1_chr1_+_134373910_134373945	0.194726	NHLH1,2.p2	AK171177|Rbbp5|213464|retinoblastoma binding protein 5	AK154782|Rbbp5|213464|retinoblastoma binding protein 5	NM_172517|Rbbp5|213464|retinoblastoma binding protein 5	AK170520|Rbbp5|213464|retinoblastoma binding protein 5
mm9_v1_chr15_+_52543936_52544030	0.194372	NHLH1,2.p2	AK146250|Med30|69790|mediator complex subunit 30	AK011104|Med30|69790|mediator complex subunit 30	NM_027212|Med30|69790|mediator complex subunit 30	AK007739|Med30|69790|mediator complex subunit 30	BC020113|Med30|69790|mediator complex subunit 30
mm9_v1_chr14_+_21871781_21871860	0.194015	NHLH1,2.p2	AK009508|Adk|11534|adenosine kinase	AK157662|Adk|11534|adenosine kinase	AK028100|Adk|11534|adenosine kinase	AK139200|Adk|11534|adenosine kinase	AK032871|Adk|11534|adenosine kinase	BC009659|Adk|11534|adenosine kinase	NM_134079|Adk|11534|adenosine kinase	AY540996|Adk|11534|adenosine kinase
mm9_v1_chr15_-_77137301_77137357	0.193685	NHLH1,2.p2	AK077594|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr17_-_6132461_6132616	0.193663	NHLH1,2.p2	AK213945|Gm15590|100270751|ferritin light chain 1 pseudogene
mm9_v1_chrX_+_65931715_65931923	0.192614	NHLH1,2.p2	AK053829|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	BC079671|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	NM_008031|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK140343|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK046605|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK053701|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK080898|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK080948|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	L23971|Fmr1|14265|fragile X mental retardation syndrome 1 homolog
mm9_v1_chr15_-_36724292_36724292	0.192507	NHLH1,2.p2	NM_011740|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr11_-_4646742_4646780	0.191564	NHLH1,2.p2	BC104356|Cabp7|192650|calcium binding protein 7	BC104357|Cabp7|192650|calcium binding protein 7	AF419324|Cabp7|192650|calcium binding protein 7	NM_138948|Cabp7|192650|calcium binding protein 7
mm9_v1_chr3_-_89153857_89153933	0.191421	NHLH1,2.p2	AK151804|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK152725|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK152954|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK152973|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	BC009132|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK020649|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AF006196|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	BC057909|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK170101|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK149796|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK039384|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK142520|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK170365|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK149684|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK048901|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	NM_001037722|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	NM_009614|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)
mm9_v1_chr16_-_17842060_17842142	0.191173	NHLH1,2.p2	AK183515|Dgcr2|13356|DiGeorge syndrome critical region gene 2
mm9_v1_chr8_+_67471046_67471202	0.191039	NHLH1,2.p2	AK013998|Tmem192|73067|transmembrane protein 192	NM_001163747|Tmem192|73067|transmembrane protein 192	NM_028427|Tmem192|73067|transmembrane protein 192	AK168146|Tmem192|73067|transmembrane protein 192	AK046181|Tmem192|73067|transmembrane protein 192	AK132619|Tmem192|73067|transmembrane protein 192	BC020157|Tmem192|73067|transmembrane protein 192
mm9_v1_chr11_+_116060160_116060223	0.190857	NHLH1,2.p2	NM_027107|2310004N24Rik|69535|RIKEN cDNA 2310004N24 gene	AK146257|2310004N24Rik|69535|RIKEN cDNA 2310004N24 gene	AK009156|2310004N24Rik|69535|RIKEN cDNA 2310004N24 gene	BC027639|2310004N24Rik|69535|RIKEN cDNA 2310004N24 gene
mm9_v1_chr16_+_18249036_18249160	0.190395	NHLH1,2.p2	AK146391|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	BC046976|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	BC027431|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK034102|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK080170|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK133844|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK151422|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK153190|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK169240|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK150482|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK151311|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK151725|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK151778|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK152055|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK152201|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK152363|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK152548|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK152903|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK153043|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	BC038486|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)
mm9_v1_chr2_-_178149153_178149214	0.190344	NHLH1,2.p2	NM_001085501|Ppp1r3d|228966|protein phosphatase 1, regulatory subunit 3D
mm9_v1_chr2_+_163428044_163428072	0.190095	NHLH1,2.p2	AK039450|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_029512|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_181734|Ttpal|76080|tocopherol (alpha) transfer protein-like
mm9_v1_chr15_-_74942109_74942378	0.189103	NHLH1,2.p2	M18466|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2	D86232|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2	BC092082|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2	NM_001099217|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2
mm9_v1_chr8_+_125856612_125856612	0.188709	NHLH1,2.p2	BC049152|Spire2|234857|spire homolog 2 (Drosophila)	BC054072|Spire2|234857|spire homolog 2 (Drosophila)	NM_172287|Spire2|234857|spire homolog 2 (Drosophila)
mm9_v1_chr13_+_21570775_21570839	0.188689	NHLH1,2.p2	NM_001039115|Zkscan4|544922|zinc finger with KRAB and SCAN domains 4	BC141222|Zkscan4|544922|zinc finger with KRAB and SCAN domains 4
mm9_v1_chr8_-_106772390_106772476	0.18867	NHLH1,2.p2	AF105217|Tk2|57813|thymidine kinase 2, mitochondrial	AJ249341|Tk2|57813|thymidine kinase 2, mitochondrial	BC019982|Tk2|57813|thymidine kinase 2, mitochondrial	AK041651|Tk2|57813|thymidine kinase 2, mitochondrial	AK051286|Tk2|57813|thymidine kinase 2, mitochondrial	AK154160|Tk2|57813|thymidine kinase 2, mitochondrial	AK087557|Tk2|57813|thymidine kinase 2, mitochondrial	NM_021028|Tk2|57813|thymidine kinase 2, mitochondrial
mm9_v1_chr1_-_10710010_10710025	0.188198	NHLH1,2.p2	BC119559|Cpa6|329093|carboxypeptidase A6	BC119560|Cpa6|329093|carboxypeptidase A6	AY773477|Cpa6|329093|carboxypeptidase A6	NM_177834|Cpa6|329093|carboxypeptidase A6	AK078883|Cpa6|329093|carboxypeptidase A6
mm9_v1_chr7_+_31572920_31572925	0.18777	NHLH1,2.p2	AK131603|Krtdap|64661|keratinocyte differentiation associated protein	AK131606|Krtdap|64661|keratinocyte differentiation associated protein	BC132510|Krtdap|64661|keratinocyte differentiation associated protein	BC132512|Krtdap|64661|keratinocyte differentiation associated protein	BC145437|Krtdap|64661|keratinocyte differentiation associated protein	BC145438|Krtdap|64661|keratinocyte differentiation associated protein	NM_001033131|Krtdap|64661|keratinocyte differentiation associated protein
mm9_v1_chr8_+_107064705_107064811	0.187321	NHLH1,2.p2	AK090390|Car7|12354|carbonic anhydrase 7	AY075021|Car7|12354|carbonic anhydrase 7	NM_053070|Car7|12354|carbonic anhydrase 7	BC094913|Car7|12354|carbonic anhydrase 7	AF291660|Car7|12354|carbonic anhydrase 7
mm9_v1_chr16_+_90386256_90386261	0.1856	NHLH1,2.p2	AK147425|Hunk|26559|hormonally upregulated Neu-associated kinase
mm9_v1_chrX_+_7339786_7339905	0.185422	NHLH1,2.p2	NM_001105196|Tcfe3|209446|transcription factor E3	NM_172472|Tcfe3|209446|transcription factor E3	AK139756|Tcfe3|209446|transcription factor E3	BC056358|Tcfe3|209446|transcription factor E3	BC063047|Tcfe3|209446|transcription factor E3	AK144751|Tcfe3|209446|transcription factor E3	AK145832|Tcfe3|209446|transcription factor E3	AK145029|Tcfe3|209446|transcription factor E3	AK144657|Tcfe3|209446|transcription factor E3	AK154690|Tcfe3|209446|transcription factor E3	BC051568|Tcfe3|209446|transcription factor E3	AK089762|Tcfe3|209446|transcription factor E3	AK159162|Tcfe3|209446|transcription factor E3	BC032963|Tcfe3|209446|transcription factor E3
mm9_v1_chr3_+_144233654_144233696	0.18539	NHLH1,2.p2	AK159085|Sep15|93684|selenoprotein	BC019792|Sep15|93684|selenoprotein	AK020419|Sep15|93684|selenoprotein	AK159353|Sep15|93684|selenoprotein
mm9_v1_chr10_+_127472624_127472720	0.185389	NHLH1,2.p2	AK169432|Naca|17938|nascent polypeptide-associated complex alpha polypeptide	AK146197|Naca|17938|nascent polypeptide-associated complex alpha polypeptide	AL355707|Naca|17938|nascent polypeptide-associated complex alpha polypeptide	AK168023|Naca|17938|nascent polypeptide-associated complex alpha polypeptide	U48364|Naca|17938|nascent polypeptide-associated complex alpha polypeptide	AK146149|Naca|17938|nascent polypeptide-associated complex alpha polypeptide	AK168169|Naca|17938|nascent polypeptide-associated complex alpha polypeptide	AK151928|Naca|17938|nascent polypeptide-associated complex alpha polypeptide	AK169435|Naca|17938|nascent polypeptide-associated complex alpha polypeptide	AK161678|Naca|17938|nascent polypeptide-associated complex alpha polypeptide	BC029830|Naca|17938|nascent polypeptide-associated complex alpha polypeptide	BC083340|Naca|17938|nascent polypeptide-associated complex alpha polypeptide	AK168607|Naca|17938|nascent polypeptide-associated complex alpha polypeptide
mm9_v1_chr10_-_42198085_42198160	0.185347	NHLH1,2.p2	
mm9_v1_chr17_-_26078825_26078928	0.184727	NHLH1,2.p2	AK155173|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK016852|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK137390|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK033349|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK170431|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AB008895|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	BC014287|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	NM_011822|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK163680|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK169284|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q
mm9_v1_chr6_+_124989830_124989833	0.184301	NHLH1,2.p2	
mm9_v1_chr17_-_34999068_34999191	0.184046	NHLH1,2.p2	AK149531|Cfb|14962|complement factor B	BC005451|Cfb|14962|complement factor B	AK098094|Cfb|14962|complement factor B	AK149573|Cfb|14962|complement factor B	M57890|Cfb|14962|complement factor B	AK151246|Cfb|14962|complement factor B
mm9_v1_chr2_+_122564227_122564360	0.183964	NHLH1,2.p2	AK147116|Pldn|18457|pallidin	NM_019788|Pldn|18457|pallidin	BC016554|Pldn|18457|pallidin	AK172571|Pldn|18457|pallidin	AK077720|Pldn|18457|pallidin	AK038381|Pldn|18457|pallidin	BC085260|Pldn|18457|pallidin	AK160580|Pldn|18457|pallidin	AK170964|Pldn|18457|pallidin
mm9_v1_chr19_+_7492081_7492131	0.183359	NHLH1,2.p2	NM_175381|2700081O15Rik|108899|RIKEN cDNA 2700081O15 gene
mm9_v1_chr5_-_110877489_110877534	0.183325	NHLH1,2.p2	BC059932|Fbrsl1|381668|fibrosin-like 1	NM_001142642|Fbrsl1|381668|fibrosin-like 1
mm9_v1_chr13_+_113717661_113718000	0.182817	NHLH1,2.p2	AK087450|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	AK042497|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	AK042066|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	AK162443|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	BC020331|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	BC057112|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	AK049530|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	BC037686|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	BC082319|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	BC050229|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	NM_172594|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29
mm9_v1_chr7_-_147222126_147222249	0.182506	NHLH1,2.p2	BC025582|Tubgcp2|74237|tubulin, gamma complex associated protein 2	AK167924|Tubgcp2|74237|tubulin, gamma complex associated protein 2	BC025564|Tubgcp2|74237|tubulin, gamma complex associated protein 2	BC012519|Tubgcp2|74237|tubulin, gamma complex associated protein 2	AK153511|Tubgcp2|74237|tubulin, gamma complex associated protein 2	BC027034|Tubgcp2|74237|tubulin, gamma complex associated protein 2	AK146771|Tubgcp2|74237|tubulin, gamma complex associated protein 2	NM_133755|Tubgcp2|74237|tubulin, gamma complex associated protein 2
mm9_v1_chr5_-_87521574_87521580	0.18227	NHLH1,2.p2	BC141232|Ugt2b36|231396|UDP glucuronosyltransferase 2 family, polypeptide B36	BC145555|Ugt2b36|231396|UDP glucuronosyltransferase 2 family, polypeptide B36	NM_001029867|Ugt2b36|231396|UDP glucuronosyltransferase 2 family, polypeptide B36	AK149425|Ugt2b36|231396|UDP glucuronosyltransferase 2 family, polypeptide B36
mm9_v1_chr10_+_127472725_127472748	0.182017	NHLH1,2.p2	U22151|Naca|17938|nascent polypeptide-associated complex alpha polypeptide	BC099375|Naca|17938|nascent polypeptide-associated complex alpha polypeptide
mm9_v1_chr12_-_114167705_114167755	0.181875	NHLH1,2.p2	AF038572|Jag2|16450|jagged 2	NM_010588|Jag2|16450|jagged 2
mm9_v1_chr7_-_116688776_116688863	0.18139	NHLH1,2.p2	BC030391|St5|76954|suppression of tumorigenicity 5
mm9_v1_chr11_-_53882433_53882546	0.181036	NHLH1,2.p2	AB221672|Pdlim4|30794|PDZ and LIM domain 4	BC030068|Pdlim4|30794|PDZ and LIM domain 4	Y08361|Pdlim4|30794|PDZ and LIM domain 4	AK035513|Pdlim4|30794|PDZ and LIM domain 4	NM_019417|Pdlim4|30794|PDZ and LIM domain 4
mm9_v1_chr4_+_155213788_155213790	0.180668	NHLH1,2.p2	NM_024263|Mxra8|74761|matrix-remodelling associated 8
mm9_v1_chr19_+_38911056_38911166	0.180621	NHLH1,2.p2	AK172979|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	NM_145952|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC138056|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC138057|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC145129|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12
mm9_v1_chr11_-_100565382_100565591	0.180564	NHLH1,2.p2	AF316999|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	BC029209|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	AK153342|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	AK021012|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	NM_030150|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58
mm9_v1_chrX_-_98254969_98254977	0.180006	NHLH1,2.p2	AK082794|Tex11|83558|testis expressed gene 11	BC116709|Tex11|83558|testis expressed gene 11	AF285572|Tex11|83558|testis expressed gene 11	AK029799|Tex11|83558|testis expressed gene 11	NM_001167997|Tex11|83558|testis expressed gene 11	NM_031384|Tex11|83558|testis expressed gene 11
mm9_v1_chr4_+_155384263_155384331	0.179637	NHLH1,2.p2	AK087335|Sdf4|20318|stromal cell derived factor 4
mm9_v1_chr19_-_24630299_24630460	0.179579	NHLH1,2.p2	AK164552|Pip5k1b|18719|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	AK133809|Pip5k1b|18719|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	AK146100|Pip5k1b|18719|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	AK149354|Pip5k1b|18719|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	NM_008846|Pip5k1b|18719|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	AK077334|Pip5k1b|18719|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	BC034864|Pip5k1b|18719|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta
mm9_v1_chr4_-_14753526_14753603	0.178994	NHLH1,2.p2	BC087552|Otud6b|72201|OTU domain containing 6B	AK172229|Otud6b|72201|OTU domain containing 6B	AK172338|Otud6b|72201|OTU domain containing 6B	BC031474|Otud6b|72201|OTU domain containing 6B	AK011203|Otud6b|72201|OTU domain containing 6B	AK169134|Otud6b|72201|OTU domain containing 6B	AK166546|Otud6b|72201|OTU domain containing 6B	AK144761|Otud6b|72201|OTU domain containing 6B	AK166445|Otud6b|72201|OTU domain containing 6B	AK155761|Otud6b|72201|OTU domain containing 6B
mm9_v1_chr5_+_121039024_121039042	0.17894	NHLH1,2.p2	AK076996|Iqcd|75732|IQ motif containing D	NM_029408|Iqcd|75732|IQ motif containing D	AK017032|Iqcd|75732|IQ motif containing D	BC125429|Iqcd|75732|IQ motif containing D	BC137644|Iqcd|75732|IQ motif containing D	BC100441|Iqcd|75732|IQ motif containing D
mm9_v1_chr12_-_3309404_3309739	0.178625	NHLH1,2.p2	AK195457|Rab10|19325|RAB10, member RAS oncogene family	AB232604|Rab10|19325|RAB10, member RAS oncogene family	CT010394|Rab10|19325|RAB10, member RAS oncogene family	AK150384|Rab10|19325|RAB10, member RAS oncogene family	AK151473|Rab10|19325|RAB10, member RAS oncogene family	AF035646|Rab10|19325|RAB10, member RAS oncogene family
mm9_v1_chr7_+_24866915_24866972	0.178559	NHLH1,2.p2	AK144892|Zfp180|210135|zinc finger protein 180	AK083802|Zfp180|210135|zinc finger protein 180	BC085472|Zfp180|210135|zinc finger protein 180	AK145004|Zfp180|210135|zinc finger protein 180	BC066115|Zfp180|210135|zinc finger protein 180	AK141922|Zfp180|210135|zinc finger protein 180	NM_001045486|Zfp180|210135|zinc finger protein 180	AK154182|Zfp180|210135|zinc finger protein 180	BC063741|Zfp180|210135|zinc finger protein 180
mm9_v1_chr11_-_66339627_66339627	0.178521	NHLH1,2.p2	AK147504|Shisa6|380702|shisa homolog 6 (Xenopus laevis)	NM_001034874|Shisa6|380702|shisa homolog 6 (Xenopus laevis)
mm9_v1_chr2_+_181099632_181099635	0.178102	NHLH1,2.p2	AK041491|Zgpat|229007|zinc finger, CCCH-type with G patch domain	NM_144894|Zgpat|229007|zinc finger, CCCH-type with G patch domain
mm9_v1_chr1_+_87804349_87804399	0.177862	NHLH1,2.p2	AK206485|Itm2c|64294|integral membrane protein 2C	AK207473|Itm2c|64294|integral membrane protein 2C	AK218160|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr4_+_155213834_155213912	0.177276	NHLH1,2.p2	BC026438|Mxra8|74761|matrix-remodelling associated 8	AB040488|Mxra8|74761|matrix-remodelling associated 8	AK004732|Mxra8|74761|matrix-remodelling associated 8	AB052097|Mxra8|74761|matrix-remodelling associated 8
mm9_v1_chr8_-_72963464_72963487	0.177195	NHLH1,2.p2	AK129173|Crtc1|382056|CREB regulated transcription coactivator 1	BC080308|Crtc1|382056|CREB regulated transcription coactivator 1	NM_001004062|Crtc1|382056|CREB regulated transcription coactivator 1	BC056137|Crtc1|382056|CREB regulated transcription coactivator 1	BC068139|Crtc1|382056|CREB regulated transcription coactivator 1
mm9_v1_chr15_-_78971563_78971688	0.177125	NHLH1,2.p2	BC068203|1700088E04Rik|27660|RIKEN cDNA 1700088E04 gene	BC096672|1700088E04Rik|27660|RIKEN cDNA 1700088E04 gene	BC116891|1700088E04Rik|27660|RIKEN cDNA 1700088E04 gene	BC116893|1700088E04Rik|27660|RIKEN cDNA 1700088E04 gene	BC144714|1700088E04Rik|27660|RIKEN cDNA 1700088E04 gene	BC144715|1700088E04Rik|27660|RIKEN cDNA 1700088E04 gene	AK030004|1700088E04Rik|27660|RIKEN cDNA 1700088E04 gene	AK006539|1700088E04Rik|27660|RIKEN cDNA 1700088E04 gene	AK007028|1700088E04Rik|27660|RIKEN cDNA 1700088E04 gene	NM_138581|1700088E04Rik|27660|RIKEN cDNA 1700088E04 gene
mm9_v1_chr10_-_106922986_106923189	0.176293	NHLH1,2.p2	X56182|Myf5|17877|myogenic factor 5	BC132144|Myf5|17877|myogenic factor 5	AK044894|Myf5|17877|myogenic factor 5	AK083402|Myf5|17877|myogenic factor 5	NM_008656|Myf5|17877|myogenic factor 5
mm9_v1_chr9_+_121628258_121628322	0.175948	NHLH1,2.p2	AK163916|Nktr|18087|natural killer tumor recognition sequence	L04289|Nktr|18087|natural killer tumor recognition sequence	NM_010918|Nktr|18087|natural killer tumor recognition sequence
mm9_v1_chr11_+_57615080_57615164	0.175899	NHLH1,2.p2	BC051686|Sap30l|50724|SAP30-like	NM_001081168|Sap30l|50724|SAP30-like	BC094930|Sap30l|50724|SAP30-like
mm9_v1_chr9_-_18190355_18190479	0.175566	NHLH1,2.p2	BC108995|Naalad2|72560|N-acetylated alpha-linked acidic dipeptidase 2	BC108996|Naalad2|72560|N-acetylated alpha-linked acidic dipeptidase 2	AY243507|Naalad2|72560|N-acetylated alpha-linked acidic dipeptidase 2	NM_028279|Naalad2|72560|N-acetylated alpha-linked acidic dipeptidase 2	AK133611|Naalad2|72560|N-acetylated alpha-linked acidic dipeptidase 2
mm9_v1_chr2_+_148506922_148506934	0.175472	NHLH1,2.p2	AK018470|Gzf1|74533|GDNF-inducible zinc finger protein 1	AB100266|Gzf1|74533|GDNF-inducible zinc finger protein 1	BC096015|Gzf1|74533|GDNF-inducible zinc finger protein 1
mm9_v1_chr7_-_133591146_133591163	0.175331	NHLH1,2.p2	AK160497|Atp2a1|11937|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1
mm9_v1_chr1_-_160887568_160887568	0.175091	NHLH1,2.p2	NM_001085376|Pappa2|23850|pappalysin 2
mm9_v1_chr9_-_48719069_48719203	0.174961	NHLH1,2.p2	AY605711|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	AF513221|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	X72395|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	BC144799|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	BC145743|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	M74425|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	NM_001099644|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	NM_013561|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A
mm9_v1_chr6_+_18816317_18816373	0.174744	NHLH1,2.p2	BC049731|Ankrd7|75196|ankyrin repeat domain 7	NM_001167757|Ankrd7|75196|ankyrin repeat domain 7	NM_029202|Ankrd7|75196|ankyrin repeat domain 7	AK077080|Ankrd7|75196|ankyrin repeat domain 7	AK015948|Ankrd7|75196|ankyrin repeat domain 7
mm9_v1_chr5_+_144090975_144090986	0.174598	NHLH1,2.p2	AK002861|0610040B10Rik|67672|RIKEN cDNA 0610040B10 gene	AK009603|0610040B10Rik|67672|RIKEN cDNA 0610040B10 gene	AK144491|0610040B10Rik|67672|RIKEN cDNA 0610040B10 gene
mm9_v1_chr17_-_30713105_30713132	0.174552	NHLH1,2.p2	BC057897|Btbd9|224671|BTB (POZ) domain containing 9	AK052664|Btbd9|224671|BTB (POZ) domain containing 9	AK087881|Btbd9|224671|BTB (POZ) domain containing 9
mm9_v1_chr10_-_80986969_80986969	0.174401	NHLH1,2.p2	BC005439|Gna15|14676|guanine nucleotide binding protein, alpha 15	NM_010304|Gna15|14676|guanine nucleotide binding protein, alpha 15
mm9_v1_chr9_+_86910371_86910467	0.17438	NHLH1,2.p2	AB212223|Ripply2|382089|ripply2 homolog (zebrafish)	NM_001037907|Ripply2|382089|ripply2 homolog (zebrafish)	AK081203|Ripply2|382089|ripply2 homolog (zebrafish)
mm9_v1_chr5_-_89105135_89105221	0.173976	NHLH1,2.p2	AK045986|Grsf1|231413|G-rich RNA sequence binding factor 1	AK044889|Grsf1|231413|G-rich RNA sequence binding factor 1	AK077782|Grsf1|231413|G-rich RNA sequence binding factor 1	NM_178700|Grsf1|231413|G-rich RNA sequence binding factor 1
mm9_v1_chr11_+_20124648_20124793	0.173894	NHLH1,2.p2	AK207850|Rab1|19324|RAB1, member RAS oncogene family	AK215283|Rab1|19324|RAB1, member RAS oncogene family
mm9_v1_chr5_+_34886013_34886095	0.173841	NHLH1,2.p2	AK150265|Sh3bp2|24055|SH3-domain binding protein 2	NM_001145858|Sh3bp2|24055|SH3-domain binding protein 2	AK155970|Sh3bp2|24055|SH3-domain binding protein 2	AK156912|Sh3bp2|24055|SH3-domain binding protein 2
mm9_v1_chr16_+_95924061_95924067	0.173704	NHLH1,2.p2	AK128933|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK152750|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK143687|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK144974|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK151315|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK153339|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK153478|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain
mm9_v1_chr3_-_100489321_100489392	0.173047	NHLH1,2.p2	AK013515|Man1a2|17156|mannosidase, alpha, class 1A, member 2	U03457|Man1a2|17156|mannosidase, alpha, class 1A, member 2	U03458|Man1a2|17156|mannosidase, alpha, class 1A, member 2
mm9_v1_chr7_-_31606540_31606666	0.172799	NHLH1,2.p2	AF545043|Ffar2|233079|free fatty acid receptor 2	NM_001168509|Ffar2|233079|free fatty acid receptor 2
mm9_v1_chr11_-_86399926_86400010	0.172556	NHLH1,2.p2	AK217200|Tmem49|75909|transmembrane protein 49
mm9_v1_chr8_+_87604829_87604904	0.171995	NHLH1,2.p2	AK010893|BC056474|414077|cDNA sequence BC056474	BC089623|BC056474|414077|cDNA sequence BC056474	NM_001001493|BC056474|414077|cDNA sequence BC056474	BC024937|BC056474|414077|cDNA sequence BC056474	BC091742|BC056474|414077|cDNA sequence BC056474	BC056474|BC056474|414077|cDNA sequence BC056474
mm9_v1_chr9_-_121748578_121748578	0.171954	NHLH1,2.p2	NM_028384|Ccdc13|434446|coiled-coil domain containing 13
mm9_v1_chr13_+_32893953_32893987	0.171528	NHLH1,2.p2	AK082078|Wrnip1|78903|Werner helicase interacting protein 1
mm9_v1_chr9_-_88333710_88333807	0.169869	NHLH1,2.p2	AK046839|Snx14|244962|sorting nexin 14	AK049371|Snx14|244962|sorting nexin 14	AK082389|Snx14|244962|sorting nexin 14	BC080799|Snx14|244962|sorting nexin 14	NM_172926|Snx14|244962|sorting nexin 14
mm9_v1_chr1_-_193220140_193220197	0.169121	NHLH1,2.p2	
mm9_v1_chr7_+_127347474_127347546	0.168093	NHLH1,2.p2	AK029665|Abca14|67928|ATP-binding cassette, sub-family A (ABC1), member 14	AY243470|Abca14|67928|ATP-binding cassette, sub-family A (ABC1), member 14	NM_026458|Abca14|67928|ATP-binding cassette, sub-family A (ABC1), member 14	AK007156|Abca14|67928|ATP-binding cassette, sub-family A (ABC1), member 14	AK015996|Abca14|67928|ATP-binding cassette, sub-family A (ABC1), member 14	AK016294|Abca14|67928|ATP-binding cassette, sub-family A (ABC1), member 14	BC116805|Abca14|67928|ATP-binding cassette, sub-family A (ABC1), member 14	BC116809|Abca14|67928|ATP-binding cassette, sub-family A (ABC1), member 14
mm9_v1_chr5_+_136363810_136363893	0.168015	NHLH1,2.p2	BC018257|Hspb1|15507|heat shock protein 1	AK003119|Hspb1|15507|heat shock protein 1	AK168927|Hspb1|15507|heat shock protein 1	AK010663|Hspb1|15507|heat shock protein 1	X14686|Hspb1|15507|heat shock protein 1	BC090388|Hspb1|15507|heat shock protein 1	BC099463|Hspb1|15507|heat shock protein 1
mm9_v1_chr18_-_36675393_36675437	0.167713	NHLH1,2.p2	L07264|Hbegf|15200|heparin-binding EGF-like growth factor	AK145548|Hbegf|15200|heparin-binding EGF-like growth factor	AK160575|Hbegf|15200|heparin-binding EGF-like growth factor	BC089607|Hbegf|15200|heparin-binding EGF-like growth factor	AK052084|Hbegf|15200|heparin-binding EGF-like growth factor
mm9_v1_chr10_-_9394979_9395005	0.167491	NHLH1,2.p2	AK132444|Samd5|320825|sterile alpha motif domain containing 5	AK087498|Samd5|320825|sterile alpha motif domain containing 5	NM_177271|Samd5|320825|sterile alpha motif domain containing 5
mm9_v1_chr3_-_107957795_107957821	0.167144	NHLH1,2.p2	AK032627|Gpr61|229714|G protein-coupled receptor 61	AK133702|Gpr61|229714|G protein-coupled receptor 61	NM_175470|Gpr61|229714|G protein-coupled receptor 61
mm9_v1_chr4_-_138419379_138419383	0.166889	NHLH1,2.p2	AK090021|Pla2g5|18784|phospholipase A2, group V	NM_001122954|Pla2g5|18784|phospholipase A2, group V
mm9_v1_chr7_+_134944168_134944205	0.16645	NHLH1,2.p2	BC006822|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	BC018525|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	BC132605|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	BC138589|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	AF277718|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm9_v1_chr7_+_134944106_134944154	0.166288	NHLH1,2.p2	NM_001040684|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	NM_133943|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	AK077476|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm9_v1_chr1_-_174149989_174150025	0.165291	NHLH1,2.p2	NM_009813|Casq1|12372|calsequestrin 1
mm9_v1_chr1_+_55188086_55188145	0.16516	NHLH1,2.p2	NM_025283|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	AK162327|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	AK147857|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	AK020446|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC028500|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC037499|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC058168|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC052475|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	U01138|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)
mm9_v1_chr19_-_7066983_7067014	0.164944	NHLH1,2.p2	BC049281|Dnajc4|57431|DnaJ (Hsp40) homolog, subfamily C, member 4	AK170008|Dnajc4|57431|DnaJ (Hsp40) homolog, subfamily C, member 4	AK008507|Dnajc4|57431|DnaJ (Hsp40) homolog, subfamily C, member 4
mm9_v1_chr4_+_97444450_97444485	0.163435	NHLH1,2.p2	AK054310|Nfia|18027|nuclear factor I/A	AK137731|Nfia|18027|nuclear factor I/A
mm9_v1_chr3_-_86352170_86352368	0.16333	NHLH1,2.p2	BC046628|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK053645|Mab21l2|23937|mab-21-like 2 (C. elegans)	NM_011839|Mab21l2|23937|mab-21-like 2 (C. elegans)	BC058730|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK144373|Mab21l2|23937|mab-21-like 2 (C. elegans)
mm9_v1_chr11_+_116518421_116518421	0.163118	NHLH1,2.p2	DQ390337|Gm11744|100038570|predicted gene 11744	NM_001163318|Gm11744|100038570|predicted gene 11744
mm9_v1_chr7_-_74517624_74517743	0.162614	NHLH1,2.p2	AK132678|Mef2a|17258|myocyte enhancer factor 2A	BC019116|Mef2a|17258|myocyte enhancer factor 2A	BC096598|Mef2a|17258|myocyte enhancer factor 2A	BC061128|Mef2a|17258|myocyte enhancer factor 2A	AK052385|Mef2a|17258|myocyte enhancer factor 2A	AK153751|Mef2a|17258|myocyte enhancer factor 2A	NM_001033713|Mef2a|17258|myocyte enhancer factor 2A
mm9_v1_chr10_-_13272820_13272870	0.161998	NHLH1,2.p2	BC033415|Pex3|56535|peroxisomal biogenesis factor 3	AK075820|Pex3|56535|peroxisomal biogenesis factor 3	AF152996|Pex3|56535|peroxisomal biogenesis factor 3
mm9_v1_chr6_-_124807733_124807764	0.1618	NHLH1,2.p2	AK140962|Leprel2|14789|leprecan-like 2
mm9_v1_chr5_+_143105467_143105567	0.161583	NHLH1,2.p2	AK010881|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	AK043857|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	AK155113|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	BC044894|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	NM_178398|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	AK169051|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	AK172030|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2
mm9_v1_chr2_-_35056446_35056576	0.161249	NHLH1,2.p2	AK165812|Rab14|68365|RAB14, member RAS oncogene family	AK013410|Rab14|68365|RAB14, member RAS oncogene family	AJ968955|Rab14|68365|RAB14, member RAS oncogene family	AJ968956|Rab14|68365|RAB14, member RAS oncogene family	AJ968957|Rab14|68365|RAB14, member RAS oncogene family	AJ968958|Rab14|68365|RAB14, member RAS oncogene family	AJ968959|Rab14|68365|RAB14, member RAS oncogene family	AJ968960|Rab14|68365|RAB14, member RAS oncogene family	AK168551|Rab14|68365|RAB14, member RAS oncogene family	AK169946|Rab14|68365|RAB14, member RAS oncogene family	AK168867|Rab14|68365|RAB14, member RAS oncogene family	AK169396|Rab14|68365|RAB14, member RAS oncogene family	BC025139|Rab14|68365|RAB14, member RAS oncogene family	AK002704|Rab14|68365|RAB14, member RAS oncogene family	BC056648|Rab14|68365|RAB14, member RAS oncogene family	AK043699|Rab14|68365|RAB14, member RAS oncogene family	AK135751|Rab14|68365|RAB14, member RAS oncogene family	AK133963|Rab14|68365|RAB14, member RAS oncogene family
mm9_v1_chr15_+_100959342_100959354	0.161089	NHLH1,2.p2	BC015083|Acvrl1|11482|activin A receptor, type II-like 1	BC014291|Acvrl1|11482|activin A receptor, type II-like 1
mm9_v1_chr2_-_180377395_180377395	0.160729	NHLH1,2.p2	BC108399|Tcfl5|277353|transcription factor-like 5 (basic helix-loop-helix)	NM_178254|Tcfl5|277353|transcription factor-like 5 (basic helix-loop-helix)
mm9_v1_chr8_+_74092759_74092780	0.160719	NHLH1,2.p2	AK040923|Slc27a1|26457|solute carrier family 27 (fatty acid transporter), member 1
mm9_v1_chr1_+_75371871_75371871	0.160282	NHLH1,2.p2	AF215896|Speg|11790|SPEG complex locus	NM_007463|Speg|11790|SPEG complex locus
mm9_v1_chr1_-_14908915_14908942	0.160175	NHLH1,2.p2	AY231177|Trpa1|277328|transient receptor potential cation channel, subfamily A, member 1	BC120563|Trpa1|277328|transient receptor potential cation channel, subfamily A, member 1	BC131963|Trpa1|277328|transient receptor potential cation channel, subfamily A, member 1	AK045771|Trpa1|277328|transient receptor potential cation channel, subfamily A, member 1	NM_177781|Trpa1|277328|transient receptor potential cation channel, subfamily A, member 1
mm9_v1_chr2_+_155970003_155970079	0.158825	NHLH1,2.p2	AY028425|Romo1|67067|reactive oxygen species modulator 1	NM_025946|Romo1|67067|reactive oxygen species modulator 1
mm9_v1_chr9_-_21889841_21889883	0.158026	NHLH1,2.p2	BC004583|Ecsit|26940|ECSIT homolog (Drosophila)	AK007564|Ecsit|26940|ECSIT homolog (Drosophila)	AK012835|Ecsit|26940|ECSIT homolog (Drosophila)
mm9_v1_chr11_+_32355355_32355458	0.157804	NHLH1,2.p2	AK076953|Ubtd2|327900|ubiquitin domain containing 2	BC057026|Ubtd2|327900|ubiquitin domain containing 2	NM_173784|Ubtd2|327900|ubiquitin domain containing 2
mm9_v1_chr6_-_85463535_85463588	0.157794	NHLH1,2.p2	NM_020596|Egr4|13656|early growth response 4	AK141637|Egr4|13656|early growth response 4
mm9_v1_chr2_-_103143314_103143332	0.157754	NHLH1,2.p2	BC005520|Ehf|13661|ets homologous factor	AK028651|Ehf|13661|ets homologous factor	BC006789|Ehf|13661|ets homologous factor
mm9_v1_chr2_+_21289168_21289199	0.15745	NHLH1,2.p2	AK083234|Gpr158|241263|G protein-coupled receptor 158	AK086256|Gpr158|241263|G protein-coupled receptor 158	NM_001004761|Gpr158|241263|G protein-coupled receptor 158	AK030530|Gpr158|241263|G protein-coupled receptor 158
mm9_v1_chr19_+_8969711_8969726	0.157077	NHLH1,2.p2	AK179191|Ints5|109077|integrator complex subunit 5	AK183632|Ints5|109077|integrator complex subunit 5
mm9_v1_chr15_-_55388811_55388908	0.156576	NHLH1,2.p2	BC055470|Mrpl13|68537|mitochondrial ribosomal protein L13	AB049641|Mrpl13|68537|mitochondrial ribosomal protein L13	BC027542|Mrpl13|68537|mitochondrial ribosomal protein L13	AK160744|Mrpl13|68537|mitochondrial ribosomal protein L13	AK003283|Mrpl13|68537|mitochondrial ribosomal protein L13	NM_026759|Mrpl13|68537|mitochondrial ribosomal protein L13	BC048498|Mrpl13|68537|mitochondrial ribosomal protein L13	BC060968|Mrpl13|68537|mitochondrial ribosomal protein L13
mm9_v1_chr7_-_29941186_29941253	0.156269	NHLH1,2.p2	BC058765|Fam98c|73833|family with sequence similarity 98, member C	AK166139|Fam98c|73833|family with sequence similarity 98, member C	AK003496|Fam98c|73833|family with sequence similarity 98, member C	AK138395|Fam98c|73833|family with sequence similarity 98, member C	AK171108|Fam98c|73833|family with sequence similarity 98, member C	AK080790|Fam98c|73833|family with sequence similarity 98, member C	NM_001146023|Fam98c|73833|family with sequence similarity 98, member C
mm9_v1_chr3_+_159158396_159158460	0.15579	NHLH1,2.p2	NM_001172092|Depdc1a|76131|DEP domain containing 1a	NM_001172093|Depdc1a|76131|DEP domain containing 1a	NM_029523|Depdc1a|76131|DEP domain containing 1a	BC023934|Depdc1a|76131|DEP domain containing 1a	AK088719|Depdc1a|76131|DEP domain containing 1a	AK146458|Depdc1a|76131|DEP domain containing 1a	AK050456|Depdc1a|76131|DEP domain containing 1a
mm9_v1_chr13_+_49063548_49063655	0.155789	NHLH1,2.p2	BC045201|C030044B11Rik|68128|RIKEN cDNA C030044B11 gene	BC024672|C030044B11Rik|68128|RIKEN cDNA C030044B11 gene
mm9_v1_chr5_-_135096236_135096321	0.155702	NHLH1,2.p2	AK202900|Eif4h|22384|eukaryotic translation initiation factor 4H	AK197136|Eif4h|22384|eukaryotic translation initiation factor 4H	AK192982|Eif4h|22384|eukaryotic translation initiation factor 4H	AK200162|Eif4h|22384|eukaryotic translation initiation factor 4H	AK195162|Eif4h|22384|eukaryotic translation initiation factor 4H	AK191422|Eif4h|22384|eukaryotic translation initiation factor 4H	AK191093|Eif4h|22384|eukaryotic translation initiation factor 4H	AK192082|Eif4h|22384|eukaryotic translation initiation factor 4H	AK194320|Eif4h|22384|eukaryotic translation initiation factor 4H	AK195976|Eif4h|22384|eukaryotic translation initiation factor 4H	AK197414|Eif4h|22384|eukaryotic translation initiation factor 4H	AK202850|Eif4h|22384|eukaryotic translation initiation factor 4H	AK204156|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr7_+_107520844_107520880	0.15567	NHLH1,2.p2	AK148365|C2cd3|277939|C2 calcium-dependent domain containing 3
mm9_v1_chr8_-_108224931_108224989	0.155345	NHLH1,2.p2	AK171345|Acd|497652|adrenocortical dysplasia	AK160599|Acd|497652|adrenocortical dysplasia	BC138694|Acd|497652|adrenocortical dysplasia	BC138695|Acd|497652|adrenocortical dysplasia	BC145384|Acd|497652|adrenocortical dysplasia	AK032683|Acd|497652|adrenocortical dysplasia	AK145959|Acd|497652|adrenocortical dysplasia	AK171458|Acd|497652|adrenocortical dysplasia	AK052768|Acd|497652|adrenocortical dysplasia
mm9_v1_chr5_-_34517234_34517339	0.155275	NHLH1,2.p2	AK013062|Mxd4|17122|Max dimerization protein 4
mm9_v1_chr5_+_31829364_31829413	0.155257	NHLH1,2.p2	AK149108|Slc4a1ap|20534|solute carrier family 4 (anion exchanger), member 1, adaptor protein	NM_009206|Slc4a1ap|20534|solute carrier family 4 (anion exchanger), member 1, adaptor protein	AK160250|Slc4a1ap|20534|solute carrier family 4 (anion exchanger), member 1, adaptor protein	BC072588|Slc4a1ap|20534|solute carrier family 4 (anion exchanger), member 1, adaptor protein	AK138398|Slc4a1ap|20534|solute carrier family 4 (anion exchanger), member 1, adaptor protein
mm9_v1_chr17_-_36115915_36115943	0.155116	NHLH1,2.p2	BC016636|Prr3|75210|proline-rich polypeptide 3
mm9_v1_chr12_-_103213890_103213953	0.155107	NHLH1,2.p2	AK156663|Gm2701|100040305|predicted gene 2701
mm9_v1_chr3_+_151100845_151100914	0.154962	NHLH1,2.p2	NM_133222|Eltd1|170757|EGF, latrophilin seven transmembrane domain containing 1	AF385682|Eltd1|170757|EGF, latrophilin seven transmembrane domain containing 1	BC017134|Eltd1|170757|EGF, latrophilin seven transmembrane domain containing 1
mm9_v1_chr4_+_129497951_129498025	0.154578	NHLH1,2.p2	NM_001164745|Ptp4a2|19244|protein tyrosine phosphatase 4a2	AK018045|5830469G19Rik|76093|RIKEN cDNA 5830469G19 gene
mm9_v1_chr10_-_126497197_126497239	0.154275	NHLH1,2.p2	AK158026|March9|216438|membrane-associated ring finger (C3HC4) 9	NM_001033262|March9|216438|membrane-associated ring finger (C3HC4) 9
mm9_v1_chr4_+_42339258_42339259	0.153874	NHLH1,2.p2	NM_001100596|Gm2002|100038993|predicted gene 2002	NM_010550|Il11ra2|16158|interleukin 11 receptor, alpha chain 2	U69491|Il11ra2|16158|interleukin 11 receptor, alpha chain 2	X98519|Il11ra2|16158|interleukin 11 receptor, alpha chain 2	NM_001099348|Gm13305|100042555|predicted gene 13305
mm9_v1_chr9_+_69860400_69860416	0.153552	NHLH1,2.p2	BC048705|Gtf2a2|235459|general transcription factor II A, 2
mm9_v1_chrX_+_72627673_72627773	0.153472	NHLH1,2.p2	NM_026126|Fundc2|67391|FUN14 domain containing 2	AK013460|Fundc2|67391|FUN14 domain containing 2	AK014705|Fundc2|67391|FUN14 domain containing 2	AK031214|Fundc2|67391|FUN14 domain containing 2	BC049566|Fundc2|67391|FUN14 domain containing 2	BC061464|Fundc2|67391|FUN14 domain containing 2	AY234858|Fundc2|67391|FUN14 domain containing 2
mm9_v1_chr6_+_30351902_30351953	0.153284	NHLH1,2.p2	AK172923|Klhdc10|76788|kelch domain containing 10	BC060132|Klhdc10|76788|kelch domain containing 10	NM_029742|Klhdc10|76788|kelch domain containing 10	AK039732|Klhdc10|76788|kelch domain containing 10	AK053834|Klhdc10|76788|kelch domain containing 10	AK085130|Klhdc10|76788|kelch domain containing 10
mm9_v1_chr12_-_92828896_92828926	0.153258	NHLH1,2.p2	BC117829|Gtf2a1|83602|general transcription factor II A, 1	BC117830|Gtf2a1|83602|general transcription factor II A, 1	AK048711|Gtf2a1|83602|general transcription factor II A, 1	NM_175335|Gtf2a1|83602|general transcription factor II A, 1
mm9_v1_chr2_+_125073393_125073429	0.153221	NHLH1,2.p2	AF091101|Dut|110074|deoxyuridine triphosphatase
mm9_v1_chr11_-_51799215_51799347	0.152829	NHLH1,2.p2	AK190260|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)
mm9_v1_chr11_+_101115016_101115073	0.152768	NHLH1,2.p2	AK150822|Vps25|28084|vacuolar protein sorting 25 (yeast)	AK082933|Vps25|28084|vacuolar protein sorting 25 (yeast)	AK166008|Vps25|28084|vacuolar protein sorting 25 (yeast)	AK145811|Vps25|28084|vacuolar protein sorting 25 (yeast)	AK162230|Vps25|28084|vacuolar protein sorting 25 (yeast)	AK003715|Vps25|28084|vacuolar protein sorting 25 (yeast)	BC029181|Vps25|28084|vacuolar protein sorting 25 (yeast)	NM_026776|Vps25|28084|vacuolar protein sorting 25 (yeast)	AK002500|Vps25|28084|vacuolar protein sorting 25 (yeast)	AK003877|Vps25|28084|vacuolar protein sorting 25 (yeast)	AK005149|Vps25|28084|vacuolar protein sorting 25 (yeast)
mm9_v1_chr17_-_71948041_71948067	0.152522	NHLH1,2.p2	AK045842|Trmt61b|68789|tRNA methyltransferase 61 homolog B (S. cerevisiae)
mm9_v1_chr7_+_30023324_30023364	0.152335	NHLH1,2.p2	NM_001110201|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)	NM_029887|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)	BC109331|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)	AK135529|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)
mm9_v1_chr5_+_106129819_106129884	0.152283	NHLH1,2.p2	AK158262|Lrrc8d|231549|leucine rich repeat containing 8D	NM_178701|Lrrc8d|231549|leucine rich repeat containing 8D	BC037717|Lrrc8d|231549|leucine rich repeat containing 8D	AK050400|Lrrc8d|231549|leucine rich repeat containing 8D	AK170452|Lrrc8d|231549|leucine rich repeat containing 8D
mm9_v1_chr15_-_88649697_88649749	0.151747	NHLH1,2.p2	AJ429133|Alg12|223774|asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase)	BC021379|Alg12|223774|asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase)	AK142322|Alg12|223774|asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase)	NM_001142357|Alg12|223774|asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase)	NM_145477|Alg12|223774|asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase)
mm9_v1_chr12_+_106270857_106270981	0.151361	NHLH1,2.p2	BC050937|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	BC058371|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	AK009158|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	AK013761|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	NM_028419|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	AK050883|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	DQ083330|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)
mm9_v1_chr4_+_95634005_95634072	0.150849	NHLH1,2.p2	AK020924|Hook1|77963|hook homolog 1 (Drosophila)	AK028714|Hook1|77963|hook homolog 1 (Drosophila)	AK038941|Hook1|77963|hook homolog 1 (Drosophila)	AK043870|Hook1|77963|hook homolog 1 (Drosophila)	AK049897|Hook1|77963|hook homolog 1 (Drosophila)	BC061688|Hook1|77963|hook homolog 1 (Drosophila)	NM_030014|Hook1|77963|hook homolog 1 (Drosophila)
mm9_v1_chr7_+_75097142_75097267	0.15035	NHLH1,2.p2	NM_010513|Igf1r|16001|insulin-like growth factor I receptor
mm9_v1_chr12_-_21423383_21423468	0.150073	NHLH1,2.p2	BC080802|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK159403|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK163237|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK145568|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK146371|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK150850|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK167397|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK012540|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK151715|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK008948|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK151437|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK151864|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	AK159817|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	BC085299|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm9_v1_chr5_-_121641282_121641449	0.150032	NHLH1,2.p2	D84372|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	BC057398|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	BC028513|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK011468|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK147354|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	BC059278|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK159501|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK159587|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	NM_001109992|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	NM_011202|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11
mm9_v1_chr8_+_112229987_112229987	0.149316	NHLH1,2.p2	BC059014|Zfp821|75871|zinc finger protein 821	NM_029468|Zfp821|75871|zinc finger protein 821
mm9_v1_chr11_-_50655047_50655053	0.149306	NHLH1,2.p2	BC118537|Zfp879|214779|zinc figer protein 879	AK036152|Zfp879|214779|zinc figer protein 879	NM_173387|Zfp879|214779|zinc figer protein 879
mm9_v1_chr7_-_81429262_81429274	0.149295	NHLH1,2.p2	AK020010|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1
mm9_v1_chr15_-_32174404_32174416	0.148247	NHLH1,2.p2	AK002304|Snord123|66835|small nucleolar RNA, C/D box 123
mm9_v1_chr2_+_163428073_163428114	0.147948	NHLH1,2.p2	AK043791|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK052794|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK018052|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK156641|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK081680|Ttpal|76080|tocopherol (alpha) transfer protein-like	BC052389|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK033600|Ttpal|76080|tocopherol (alpha) transfer protein-like
mm9_v1_chr2_+_145686377_145686454	0.14785	NHLH1,2.p2	AK014548|Rin2|74030|Ras and Rab interactor 2	AK040763|Rin2|74030|Ras and Rab interactor 2	AK152025|Rin2|74030|Ras and Rab interactor 2	BC005529|Rin2|74030|Ras and Rab interactor 2	AK154421|Rin2|74030|Ras and Rab interactor 2
mm9_v1_chr11_-_74739244_74739299	0.147827	NHLH1,2.p2	AB232340|Srr|27364|serine racemase	AB232342|Srr|27364|serine racemase	NM_001163311|Srr|27364|serine racemase	NM_013761|Srr|27364|serine racemase
mm9_v1_chr1_+_75382155_75382196	0.147782	NHLH1,2.p2	AK147475|Speg|11790|SPEG complex locus	NM_001085370|Speg|11790|SPEG complex locus
mm9_v1_chr5_-_35448316_35448420	0.14772	NHLH1,2.p2	BC057979|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	BC032170|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	BC046641|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	D00622|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	BC094324|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	NM_013587|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK171471|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK089250|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK166616|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK168421|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AJ639614|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK169132|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK150451|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK152485|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK153323|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK166746|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK166819|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	S67967|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK145710|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1
mm9_v1_chr7_+_24919177_24919260	0.147706	NHLH1,2.p2	NM_019941|Zfp235|56525|zinc finger protein 235	AK045726|Zfp235|56525|zinc finger protein 235	AK002713|Zfp235|56525|zinc finger protein 235	AK147833|Zfp235|56525|zinc finger protein 235	AF167321|Zfp235|56525|zinc finger protein 235	AK139127|Zfp235|56525|zinc finger protein 235	BC099965|Zfp235|56525|zinc finger protein 235
mm9_v1_chr12_-_112723995_112724011	0.147505	NHLH1,2.p2	AK140917|Gm266|212539|predicted gene 266	AK166394|Gm266|212539|predicted gene 266
mm9_v1_chr8_+_72758454_72758471	0.14722	NHLH1,2.p2	BC057305|Sugp2|234373|SURP and G patch domain containing 2
mm9_v1_chr13_+_27893522_27893571	0.147018	NHLH1,2.p2	AB032428|Prl2a1|56635|prolactin family 2, subfamily a, member 1	AF234636|Prl2a1|56635|prolactin family 2, subfamily a, member 1	NM_019991|Prl2a1|56635|prolactin family 2, subfamily a, member 1	BC099458|Prl2a1|56635|prolactin family 2, subfamily a, member 1	AK005424|Prl2a1|56635|prolactin family 2, subfamily a, member 1	AF226610|Prl2a1|56635|prolactin family 2, subfamily a, member 1	AF272368|Prl2a1|56635|prolactin family 2, subfamily a, member 1
mm9_v1_chr11_-_20731016_20731238	0.146796	NHLH1,2.p2	AK041053|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK167557|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	BC019131|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	NM_173752|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK156350|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene
mm9_v1_chrX_-_104035877_104035981	0.146586	NHLH1,2.p2	AK084983|Zcchc5|213436|zinc finger, CCHC domain containing 5	BC064821|Zcchc5|213436|zinc finger, CCHC domain containing 5	NM_199468|Zcchc5|213436|zinc finger, CCHC domain containing 5
mm9_v1_chr6_-_86347093_86347158	0.146395	NHLH1,2.p2	AK049412|Pcyox1|66881|prenylcysteine oxidase 1	AK033373|Pcyox1|66881|prenylcysteine oxidase 1	AK004799|Pcyox1|66881|prenylcysteine oxidase 1	AK004840|Pcyox1|66881|prenylcysteine oxidase 1	AK031585|Pcyox1|66881|prenylcysteine oxidase 1	AK159981|Pcyox1|66881|prenylcysteine oxidase 1	AK161616|Pcyox1|66881|prenylcysteine oxidase 1	AK169209|Pcyox1|66881|prenylcysteine oxidase 1	AK145366|Pcyox1|66881|prenylcysteine oxidase 1	AK147190|Pcyox1|66881|prenylcysteine oxidase 1	BC028308|Pcyox1|66881|prenylcysteine oxidase 1	AK134528|Pcyox1|66881|prenylcysteine oxidase 1	NM_025823|Pcyox1|66881|prenylcysteine oxidase 1
mm9_v1_chr18_-_24762299_24762341	0.146192	NHLH1,2.p2	NM_139143|Slc39a6|106957|solute carrier family 39 (metal ion transporter), member 6
mm9_v1_chr9_-_70504693_70504717	0.146058	NHLH1,2.p2	BC069845|Fam63b|235461|family with sequence similarity 63, member B	BC055816|Fam63b|235461|family with sequence similarity 63, member B
mm9_v1_chr8_+_13288180_13288277	0.14579	NHLH1,2.p2	AK083321|Tmco3|234076|transmembrane and coiled-coil domains 3	AK163479|Tmco3|234076|transmembrane and coiled-coil domains 3	AK148252|Tmco3|234076|transmembrane and coiled-coil domains 3	AK046065|Tmco3|234076|transmembrane and coiled-coil domains 3	AK088866|Tmco3|234076|transmembrane and coiled-coil domains 3	BC053487|Tmco3|234076|transmembrane and coiled-coil domains 3	AK033499|Tmco3|234076|transmembrane and coiled-coil domains 3	AK049974|Tmco3|234076|transmembrane and coiled-coil domains 3	BC039955|Tmco3|234076|transmembrane and coiled-coil domains 3
mm9_v1_chr3_+_96405063_96405082	0.145724	NHLH1,2.p2	AK051276|Lix1l|280411|Lix1-like
mm9_v1_chr6_+_28377788_28377900	0.145547	NHLH1,2.p2	AF176024|Fscn3|56223|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)	BC050759|Fscn3|56223|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)	NM_019569|Fscn3|56223|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)
mm9_v1_chr13_+_115608425_115608505	0.145452	NHLH1,2.p2	NM_001113374|Mocs2|17434|molybdenum cofactor synthesis 2	NM_001113375|Mocs2|17434|molybdenum cofactor synthesis 2	NM_013826|Mocs2|17434|molybdenum cofactor synthesis 2	AK010112|Mocs2|17434|molybdenum cofactor synthesis 2	AK002719|Mocs2|17434|molybdenum cofactor synthesis 2	AK078782|Mocs2|17434|molybdenum cofactor synthesis 2	BC004631|Mocs2|17434|molybdenum cofactor synthesis 2	BC024371|Mocs2|17434|molybdenum cofactor synthesis 2	AF091872|Mocs2|17434|molybdenum cofactor synthesis 2
mm9_v1_chr14_+_55502261_55502285	0.145251	NHLH1,2.p2	AF030769|Bcl2l2|12050|BCL2-like 2	NM_007537|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr10_+_80289428_80289498	0.145103	NHLH1,2.p2	AK160491|Oaz1|18245|ornithine decarboxylase antizyme 1	AK003452|Oaz1|18245|ornithine decarboxylase antizyme 1	AK010615|Oaz1|18245|ornithine decarboxylase antizyme 1	AK019155|Oaz1|18245|ornithine decarboxylase antizyme 1	AK146571|Oaz1|18245|ornithine decarboxylase antizyme 1	AK147167|Oaz1|18245|ornithine decarboxylase antizyme 1	AK151635|Oaz1|18245|ornithine decarboxylase antizyme 1	AK159849|Oaz1|18245|ornithine decarboxylase antizyme 1	AK159874|Oaz1|18245|ornithine decarboxylase antizyme 1	AK160598|Oaz1|18245|ornithine decarboxylase antizyme 1	AK169201|Oaz1|18245|ornithine decarboxylase antizyme 1	BC046290|Oaz1|18245|ornithine decarboxylase antizyme 1	BC024902|Oaz1|18245|ornithine decarboxylase antizyme 1	BC094287|Oaz1|18245|ornithine decarboxylase antizyme 1	BC060035|Oaz1|18245|ornithine decarboxylase antizyme 1	BC002132|Oaz1|18245|ornithine decarboxylase antizyme 1	BC091773|Oaz1|18245|ornithine decarboxylase antizyme 1	U52822|Oaz1|18245|ornithine decarboxylase antizyme 1
mm9_v1_chr13_+_97158340_97158355	0.144624	NHLH1,2.p2	AK098149|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)
mm9_v1_chr7_-_16844888_16844888	0.144337	NHLH1,2.p2	NM_007577|C5ar1|12273|complement component 5a receptor 1
mm9_v1_chr2_+_34627836_34627893	0.144292	NHLH1,2.p2	AJ002387|Hspa5|14828|heat shock protein 5	AK197258|Hspa5|14828|heat shock protein 5	AK215673|Hspa5|14828|heat shock protein 5
mm9_v1_chr3_+_134944239_134944255	0.144205	NHLH1,2.p2	BC036998|Bdh2|69772|3-hydroxybutyrate dehydrogenase, type 2
mm9_v1_chr6_+_72494378_72494452	0.143594	NHLH1,2.p2	AK165153|Capg|12332|capping protein (actin filament), gelsolin-like	AK159577|Capg|12332|capping protein (actin filament), gelsolin-like	AK159736|Capg|12332|capping protein (actin filament), gelsolin-like	NM_007599|Capg|12332|capping protein (actin filament), gelsolin-like
mm9_v1_chr11_-_70273190_70273200	0.143279	NHLH1,2.p2	AK153192|Cxcl16|66102|chemokine (C-X-C motif) ligand 16
mm9_v1_chr7_+_138087002_138087002	0.143054	NHLH1,2.p2	AK167667|Htra1|56213|HtrA serine peptidase 1
mm9_v1_chr5_+_91201460_91201461	0.14238	NHLH1,2.p2	AK159278|Pf4|56744|platelet factor 4	AK160040|Pf4|56744|platelet factor 4	NM_019932|Pf4|56744|platelet factor 4
mm9_v1_chr1_-_137210293_137210334	0.142281	NHLH1,2.p2	AF106620|Timm17a|21854|translocase of inner mitochondrial membrane 17a	BC010830|Timm17a|21854|translocase of inner mitochondrial membrane 17a	BC098216|Timm17a|21854|translocase of inner mitochondrial membrane 17a	AK003114|Timm17a|21854|translocase of inner mitochondrial membrane 17a	AK003129|Timm17a|21854|translocase of inner mitochondrial membrane 17a	NM_011590|Timm17a|21854|translocase of inner mitochondrial membrane 17a
mm9_v1_chr7_-_149865451_149865614	0.141982	NHLH1,2.p2	BC145554|Ins2|16334|insulin II	BC132650|Ins2|16334|insulin II	BC132652|Ins2|16334|insulin II	Z47785|Ins2|16334|insulin II	AY899305|Ins2|16334|insulin II	BC066208|Ins2|16334|insulin II	BC099934|Ins2|16334|insulin II	AK007612|Ins2|16334|insulin II	GQ915612|Ins2|16334|insulin II	NM_001185083|Ins2|16334|insulin II	NM_001185084|Ins2|16334|insulin II	NM_008387|Ins2|16334|insulin II
mm9_v1_chr1_+_39592594_39592679	0.141525	NHLH1,2.p2	AK144692|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	AK010503|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	BC049091|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	NM_028043|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	AK167440|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	BC050812|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed
mm9_v1_chr4_-_147525786_147525899	0.14117	NHLH1,2.p2	BC017512|Fbxo6|50762|F-box protein 6	AK152888|Fbxo6|50762|F-box protein 6
mm9_v1_chr9_-_106060406_106060468	0.140919	NHLH1,2.p2	AK052709|Glyctk|235582|glycerate kinase	BC036136|Glyctk|235582|glycerate kinase	BC025935|Glyctk|235582|glycerate kinase	AF455785|Glyctk|235582|glycerate kinase	BC025834|Glyctk|235582|glycerate kinase	BC033063|Glyctk|235582|glycerate kinase	AK049425|Glyctk|235582|glycerate kinase	AK050182|Glyctk|235582|glycerate kinase	NM_001039586|Glyctk|235582|glycerate kinase	NM_174846|Glyctk|235582|glycerate kinase
mm9_v1_chr5_-_121835619_121835649	0.140835	NHLH1,2.p2	NM_001163470|Trafd1|231712|TRAF type zinc finger domain containing 1	NM_172275|Trafd1|231712|TRAF type zinc finger domain containing 1
mm9_v1_chr5_+_24728685_24728824	0.140627	NHLH1,2.p2	NM_144908|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	BC021504|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	AK088014|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	AK084596|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	BC011428|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	AK079811|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
mm9_v1_chr12_+_72410755_72411027	0.140413	NHLH1,2.p2	NM_001190466|Dact1|59036|dapper homolog 1, antagonist of beta-catenin (xenopus)	NM_021532|Dact1|59036|dapper homolog 1, antagonist of beta-catenin (xenopus)	BC145833|Dact1|59036|dapper homolog 1, antagonist of beta-catenin (xenopus)	AF488775|Dact1|59036|dapper homolog 1, antagonist of beta-catenin (xenopus)	AY208970|Dact1|59036|dapper homolog 1, antagonist of beta-catenin (xenopus)
mm9_v1_chr11_+_11014018_11014018	0.140136	NHLH1,2.p2	AK141514|Vwc2|319922|von Willebrand factor C domain containing 2	NM_177033|Vwc2|319922|von Willebrand factor C domain containing 2
mm9_v1_chr1_+_173341811_173341858	0.139969	NHLH1,2.p2	NM_009480|Usf1|22278|upstream transcription factor 1
mm9_v1_chr11_+_78085325_78085440	0.139636	NHLH1,2.p2	BC040464|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene
mm9_v1_chr13_+_97158248_97158334	0.139584	NHLH1,2.p2	AK150656|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	NM_026173|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	AK012926|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	BC037631|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	BC027118|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	AK089013|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	AK004769|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	BC016527|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)
mm9_v1_chr10_+_87841876_87842156	0.139293	NHLH1,2.p2	BC060638|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	AK140867|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	AK173132|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	NM_001004164|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
mm9_v1_chr5_-_121835401_121835617	0.139142	NHLH1,2.p2	AK192786|Trafd1|231712|TRAF type zinc finger domain containing 1	BC038396|Trafd1|231712|TRAF type zinc finger domain containing 1	AK150038|Trafd1|231712|TRAF type zinc finger domain containing 1
mm9_v1_chr2_-_33743465_33743465	0.138663	NHLH1,2.p2	BC059907|Fam125b|72543|family with sequence similarity 125, member B	NM_175184|Fam125b|72543|family with sequence similarity 125, member B
mm9_v1_chr1_-_43155380_43155481	0.137963	NHLH1,2.p2	BC138866|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	BC138867|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	BC072608|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	NM_001013025|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	AK051333|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1
mm9_v1_chr15_+_80064503_80064578	0.137918	NHLH1,2.p2	AK163389|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	NM_178719|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK041184|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK038466|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK044773|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK050546|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK080375|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	BC094597|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)
mm9_v1_chr5_+_140981603_140981636	0.137579	NHLH1,2.p2	AK170209|Chst12|59031|carbohydrate sulfotransferase 12
mm9_v1_chr11_-_101032604_101032630	0.137333	NHLH1,2.p2	BC020025|Plekhh3|217198|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	NM_146030|Plekhh3|217198|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	AK154510|Plekhh3|217198|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	AK164128|Plekhh3|217198|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
mm9_v1_chr4_+_151671335_151671430	0.137193	NHLH1,2.p2	BC110695|Icmt|57295|isoprenylcysteine carboxyl methyltransferase	AK154135|Icmt|57295|isoprenylcysteine carboxyl methyltransferase	AK154410|Icmt|57295|isoprenylcysteine carboxyl methyltransferase	BC057132|Icmt|57295|isoprenylcysteine carboxyl methyltransferase
mm9_v1_chr4_-_140330097_140330124	0.136866	NHLH1,2.p2	AB013850|Padi4|18602|peptidyl arginine deiminase, type IV	AK137625|Padi4|18602|peptidyl arginine deiminase, type IV	NM_011061|Padi4|18602|peptidyl arginine deiminase, type IV
mm9_v1_chr2_-_22895580_22895680	0.136614	NHLH1,2.p2	AY033645|Abi1|11308|abl-interactor 1	AK152061|Abi1|11308|abl-interactor 1	AK152184|Abi1|11308|abl-interactor 1	AK034476|Abi1|11308|abl-interactor 1	BC079642|Abi1|11308|abl-interactor 1	AK151026|Abi1|11308|abl-interactor 1	AK153130|Abi1|11308|abl-interactor 1	AK164040|Abi1|11308|abl-interactor 1
mm9_v1_chr14_-_56254424_56254541	0.136002	NHLH1,2.p2	AK202276|Ipo4|75751|importin 4	AF123388|Ipo4|75751|importin 4	AK018399|Ipo4|75751|importin 4	AK147086|Ipo4|75751|importin 4	AK142138|Ipo4|75751|importin 4	BC075690|Ipo4|75751|importin 4	AK171031|Ipo4|75751|importin 4	NM_024267|Ipo4|75751|importin 4	AK030490|Ipo4|75751|importin 4
mm9_v1_chr18_-_24178797_24178851	0.135882	NHLH1,2.p2	BC011345|Zfp191|59057|zinc finger protein 191
mm9_v1_chr13_+_120276837_120276874	0.13567	NHLH1,2.p2	AK050607|Gm7120|633640|predicted gene 7120	AK162713|Gm7120|633640|predicted gene 7120	NM_001039244|Gm7120|633640|predicted gene 7120	BC021422|Gm7120|633640|predicted gene 7120
mm9_v1_chr10_+_81091284_81091284	0.135627	NHLH1,2.p2	NM_027480|Ankrd24|70615|ankyrin repeat domain 24
mm9_v1_chr15_-_79635138_79635146	0.135583	NHLH1,2.p2	BC058962|Nptxr|73340|neuronal pentraxin receptor	BC098199|Nptxr|73340|neuronal pentraxin receptor	NM_030689|Nptxr|73340|neuronal pentraxin receptor	AK147605|Nptxr|73340|neuronal pentraxin receptor
mm9_v1_chr10_+_62442999_62443009	0.135082	NHLH1,2.p2	AK011847|Rufy2|70432|RUN and FYVE domain-containing 2	BC017645|Rufy2|70432|RUN and FYVE domain-containing 2	AK173195|Rufy2|70432|RUN and FYVE domain-containing 2
mm9_v1_chr19_-_40525876_40525887	0.134962	NHLH1,2.p2	AF078666|Sorbs1|20411|sorbin and SH3 domain containing 1	AF078667|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_001034962|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_001034963|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr16_-_78376912_78377061	0.134948	NHLH1,2.p2	BC012705|Btg3|12228|B-cell translocation gene 3	AK144415|Btg3|12228|B-cell translocation gene 3	BC094027|Btg3|12228|B-cell translocation gene 3	D83745|Btg3|12228|B-cell translocation gene 3	NM_009770|Btg3|12228|B-cell translocation gene 3	Z72000|Btg3|12228|B-cell translocation gene 3
mm9_v1_chr12_+_112655640_112655799	0.134854	NHLH1,2.p2	NM_028807|1200009I06Rik|74190|RIKEN cDNA 1200009I06 gene	AK004674|1200009I06Rik|74190|RIKEN cDNA 1200009I06 gene	BC075664|1200009I06Rik|74190|RIKEN cDNA 1200009I06 gene
mm9_v1_chr7_+_107520742_107520781	0.134827	NHLH1,2.p2	NM_001017985|C2cd3|277939|C2 calcium-dependent domain containing 3	AK171263|C2cd3|277939|C2 calcium-dependent domain containing 3
mm9_v1_chr16_-_28929698_28929810	0.134814	NHLH1,2.p2	BC085092|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	BC068245|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	NM_177718|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene
mm9_v1_chr9_+_37015872_37015947	0.13474	NHLH1,2.p2	AK161115|Tmem218|66279|transmembrane protein 218	BC034160|Tmem218|66279|transmembrane protein 218	NM_025464|Tmem218|66279|transmembrane protein 218	AK003010|Tmem218|66279|transmembrane protein 218	AK007575|Tmem218|66279|transmembrane protein 218	AK008902|Tmem218|66279|transmembrane protein 218
mm9_v1_chr11_+_63892985_63892998	0.134423	NHLH1,2.p2	AK007927|2810001G20Rik|66456|RIKEN cDNA 2810001G20 gene	AK012631|2810001G20Rik|66456|RIKEN cDNA 2810001G20 gene
mm9_v1_chr8_-_124956759_124956863	0.134346	NHLH1,2.p2	M31775|Cyba|13057|cytochrome b-245, alpha polypeptide	EU791539|Cyba|13057|cytochrome b-245, alpha polypeptide	BC026791|Cyba|13057|cytochrome b-245, alpha polypeptide	AK018713|Cyba|13057|cytochrome b-245, alpha polypeptide	AK131580|Cyba|13057|cytochrome b-245, alpha polypeptide	AK171748|Cyba|13057|cytochrome b-245, alpha polypeptide	AK078854|Cyba|13057|cytochrome b-245, alpha polypeptide	AK021200|Cyba|13057|cytochrome b-245, alpha polypeptide	AK152414|Cyba|13057|cytochrome b-245, alpha polypeptide	NM_007806|Cyba|13057|cytochrome b-245, alpha polypeptide
mm9_v1_chr6_+_88852321_88852415	0.134145	NHLH1,2.p2	BC057296|Tpra1|24100|transmembrane protein, adipocyte asscociated 1	BC028977|Tpra1|24100|transmembrane protein, adipocyte asscociated 1	AK089317|Tpra1|24100|transmembrane protein, adipocyte asscociated 1
mm9_v1_chr11_-_114657186_114657223	0.134015	NHLH1,2.p2	BC060053|Btbd17|72014|BTB (POZ) domain containing 17	BC122876|Btbd17|72014|BTB (POZ) domain containing 17	AK032100|Btbd17|72014|BTB (POZ) domain containing 17	NM_028055|Btbd17|72014|BTB (POZ) domain containing 17	AK046050|Btbd17|72014|BTB (POZ) domain containing 17	AK005160|Btbd17|72014|BTB (POZ) domain containing 17	BC057599|Btbd17|72014|BTB (POZ) domain containing 17
mm9_v1_chr10_-_79502432_79502485	0.133835	NHLH1,2.p2	AK155368|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	BC037681|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	AK088610|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	BC005599|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	AK132109|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	AK144668|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	AK145201|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E
mm9_v1_chr11_+_69446453_69446577	0.133536	NHLH1,2.p2	AK172042|Fxr2|23879|fragile X mental retardation, autosomal homolog 2	BC062971|Fxr2|23879|fragile X mental retardation, autosomal homolog 2	NM_011814|Fxr2|23879|fragile X mental retardation, autosomal homolog 2	AK154243|Fxr2|23879|fragile X mental retardation, autosomal homolog 2	BC057007|Fxr2|23879|fragile X mental retardation, autosomal homolog 2
mm9_v1_chr2_+_121121189_121121220	0.132886	NHLH1,2.p2	NM_001173506|Mtap1a|17754|microtubule-associated protein 1 A	AF182212|Mtap1a|17754|microtubule-associated protein 1 A	BC028853|Mtap1a|17754|microtubule-associated protein 1 A	AK160546|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr7_-_133940879_133940922	0.13286	NHLH1,2.p2	X03797|Aldoa|11674|aldolase A, fructose-bisphosphate
mm9_v1_chr19_-_4007587_4007601	0.132429	NHLH1,2.p2	
mm9_v1_chr8_+_95484831_95484945	0.132168	NHLH1,2.p2	AY525777|Slc6a2|20538|solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	AY525778|Slc6a2|20538|solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	NM_009209|Slc6a2|20538|solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2
mm9_v1_chr11_-_120924851_120924882	0.132095	NHLH1,2.p2	AK007321|Sectm1b|58210|secreted and transmembrane 1B	BC010805|Sectm1b|58210|secreted and transmembrane 1B	AK143807|Sectm1b|58210|secreted and transmembrane 1B	AK029082|Sectm1b|58210|secreted and transmembrane 1B	NM_026907|Sectm1b|58210|secreted and transmembrane 1B
mm9_v1_chr7_+_134388553_134388625	0.131253	NHLH1,2.p2	BC052091|Zfp771|244216|zinc finger protein 771	BC062882|Zfp771|244216|zinc finger protein 771
mm9_v1_chr5_+_110529465_110529577	0.131241	NHLH1,2.p2	AK149435|Plcxd1|403178|phosphatidylinositol-specific phospholipase C, X domain containing 1
mm9_v1_chr2_+_149230984_149231068	0.131115	NHLH1,2.p2	AB036743|Cst10|58214|cystatin 10 (chondrocytes)	NM_021405|Cst10|58214|cystatin 10 (chondrocytes)	BC048364|Cst10|58214|cystatin 10 (chondrocytes)
mm9_v1_chr10_+_127848744_127848813	0.130334	NHLH1,2.p2	AK031657|Rnf41|67588|ring finger protein 41	AK034551|Rnf41|67588|ring finger protein 41	AK044103|Rnf41|67588|ring finger protein 41	AK032848|Rnf41|67588|ring finger protein 41	AK028551|Rnf41|67588|ring finger protein 41	AK077466|Rnf41|67588|ring finger protein 41
mm9_v1_chr19_+_60887452_60887529	0.130142	NHLH1,2.p2	NM_001167829|Fam45a|67894|family with sequence similarity 45, member A	NM_026437|Fam45a|67894|family with sequence similarity 45, member A	AK004643|Fam45a|67894|family with sequence similarity 45, member A	AK168474|Fam45a|67894|family with sequence similarity 45, member A	AK171767|Fam45a|67894|family with sequence similarity 45, member A	AK145769|Fam45a|67894|family with sequence similarity 45, member A	AK007867|Fam45a|67894|family with sequence similarity 45, member A	BC013514|Fam45a|67894|family with sequence similarity 45, member A	AK202624|Fam45a|67894|family with sequence similarity 45, member A
mm9_v1_chr4_+_98697606_98697678	0.130099	NHLH1,2.p2	AK149450|Angptl3|30924|angiopoietin-like 3	NM_013913|Angptl3|30924|angiopoietin-like 3	AK149555|Angptl3|30924|angiopoietin-like 3	BC019491|Angptl3|30924|angiopoietin-like 3	AF162224|Angptl3|30924|angiopoietin-like 3
mm9_v1_chr10_+_80289424_80289427	0.129301	NHLH1,2.p2	AK087942|Oaz1|18245|ornithine decarboxylase antizyme 1
mm9_v1_chr1_-_9289810_9289957	0.128966	NHLH1,2.p2	NM_027671|Sntg1|71096|syntrophin, gamma 1	AK038698|Sntg1|71096|syntrophin, gamma 1
mm9_v1_chrX_-_137077639_137077729	0.128717	NHLH1,2.p2	BC028813|Tsc22d3|14605|TSC22 domain family, member 3	AF201288|Tsc22d3|14605|TSC22 domain family, member 3	AF024519|Tsc22d3|14605|TSC22 domain family, member 3	AK083389|Tsc22d3|14605|TSC22 domain family, member 3	NM_010286|Tsc22d3|14605|TSC22 domain family, member 3	AK144196|Tsc22d3|14605|TSC22 domain family, member 3
mm9_v1_chr9_-_109098475_109098488	0.128647	NHLH1,2.p2	BC119542|Fbxw13|211305|F-box and WD-40 domain protein 13	BC127237|Fbxw13|211305|F-box and WD-40 domain protein 13	AK054339|Fbxw13|211305|F-box and WD-40 domain protein 13	NM_177598|Fbxw13|211305|F-box and WD-40 domain protein 13
mm9_v1_chr9_-_78327171_78327201	0.128561	NHLH1,2.p2	AK183068|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK185520|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK194927|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK196726|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK204373|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK208452|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK217934|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1
mm9_v1_chr11_+_98671106_98671158	0.128521	NHLH1,2.p2	NM_138660|Casc3|192160|cancer susceptibility candidate 3	AF526276|Casc3|192160|cancer susceptibility candidate 3
mm9_v1_chr6_+_63206819_63206850	0.128462	NHLH1,2.p2	AK036192|Grid2|14804|glutamate receptor, ionotropic, delta 2	BC139823|Grid2|14804|glutamate receptor, ionotropic, delta 2	D13266|Grid2|14804|glutamate receptor, ionotropic, delta 2	NM_008167|Grid2|14804|glutamate receptor, ionotropic, delta 2
mm9_v1_chr11_+_75275123_75275158	0.127778	NHLH1,2.p2	AK018628|2210403K04Rik|100042498|RIKEN cDNA 2210403K04 gene	AK008813|2210403K04Rik|100042498|RIKEN cDNA 2210403K04 gene
mm9_v1_chr12_+_114047124_114047205	0.127752	NHLH1,2.p2	AK161400|BC022687|217887|cDNA sequence BC022687	AK081297|BC022687|217887|cDNA sequence BC022687	BC090976|BC022687|217887|cDNA sequence BC022687	NM_145450|BC022687|217887|cDNA sequence BC022687
mm9_v1_chr2_+_132516018_132516018	0.127405	NHLH1,2.p2	BC100475|1110034G24Rik|73747|RIKEN cDNA 1110034G24 gene	NM_028637|1110034G24Rik|73747|RIKEN cDNA 1110034G24 gene
mm9_v1_chr15_+_33012863_33012908	0.127368	NHLH1,2.p2	NM_018755|Pgcp|54381|plasma glutamate carboxypeptidase	NM_176073|Pgcp|54381|plasma glutamate carboxypeptidase	AK135096|Pgcp|54381|plasma glutamate carboxypeptidase	BC010977|Pgcp|54381|plasma glutamate carboxypeptidase
mm9_v1_chr17_-_45710213_45710219	0.127112	NHLH1,2.p2	AK030768|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK084097|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK135366|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK146205|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chr12_-_101758964_101759037	0.126869	NHLH1,2.p2	AK046740|Ttc7b|104718|tetratricopeptide repeat domain 7B	AK148363|Ttc7b|104718|tetratricopeptide repeat domain 7B	NM_001033213|Ttc7b|104718|tetratricopeptide repeat domain 7B
mm9_v1_chr5_-_100158034_100158083	0.126799	NHLH1,2.p2	AK048739|A930011G23Rik|319818|RIKEN cDNA A930011G23 gene	AK086859|A930011G23Rik|319818|RIKEN cDNA A930011G23 gene	AK044414|A930011G23Rik|319818|RIKEN cDNA A930011G23 gene	AK050558|A930011G23Rik|319818|RIKEN cDNA A930011G23 gene
mm9_v1_chr12_+_36883788_36883809	0.126722	NHLH1,2.p2	AK164434|Ankmy2|217473|ankyrin repeat and MYND domain containing 2
mm9_v1_chr3_+_133902563_133902608	0.126438	NHLH1,2.p2	BC082332|Cxxc4|319478|CXXC finger 4
mm9_v1_chr9_+_108849434_108849501	0.126105	NHLH1,2.p2	BC018405|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1
mm9_v1_chr11_+_119176100_119176121	0.125476	NHLH1,2.p2	BC029102|Card14|170720|caspase recruitment domain family, member 14	NM_130886|Card14|170720|caspase recruitment domain family, member 14	AF363457|Card14|170720|caspase recruitment domain family, member 14
mm9_v1_chr3_+_134491969_134492012	0.125079	NHLH1,2.p2	AK031898|Tacr3|21338|tachykinin receptor 3	NM_021382|Tacr3|21338|tachykinin receptor 3	BC066845|Tacr3|21338|tachykinin receptor 3	X87823|Tacr3|21338|tachykinin receptor 3
mm9_v1_chr11_+_98902810_98903140	0.124929	NHLH1,2.p2	
mm9_v1_chr2_+_154482753_154482916	0.124699	NHLH1,2.p2	NM_029362|Chmp4b|75608|chromatin modifying protein 4B	BC011429|Chmp4b|75608|chromatin modifying protein 4B	AK008205|Chmp4b|75608|chromatin modifying protein 4B	AK156473|Chmp4b|75608|chromatin modifying protein 4B	AK159193|Chmp4b|75608|chromatin modifying protein 4B	BC059279|Chmp4b|75608|chromatin modifying protein 4B
mm9_v1_chr3_+_145600974_145601015	0.124568	NHLH1,2.p2	BC049577|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK010378|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	BC115465|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	NM_025555|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK019404|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK077565|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene
mm9_v1_chr7_-_88638540_88638668	0.124446	NHLH1,2.p2	BC024722|Ap3b2|11775|adaptor-related protein complex 3, beta 2 subunit	AK134504|Ap3b2|11775|adaptor-related protein complex 3, beta 2 subunit	BC139378|Ap3b2|11775|adaptor-related protein complex 3, beta 2 subunit	BC139379|Ap3b2|11775|adaptor-related protein complex 3, beta 2 subunit	AY528675|Ap3b2|11775|adaptor-related protein complex 3, beta 2 subunit	AK138496|Ap3b2|11775|adaptor-related protein complex 3, beta 2 subunit
mm9_v1_chr9_+_25060152_25060278	0.123751	NHLH1,2.p2	NM_009859|Sept7|235072|septin 7	BC058587|Sept7|235072|septin 7	AK141572|Sept7|235072|septin 7	AK147986|Sept7|235072|septin 7	AK088997|Sept7|235072|septin 7	AK144127|Sept7|235072|septin 7	AK220447|Sept7|235072|septin 7
mm9_v1_chr14_-_56503083_56503107	0.123301	NHLH1,2.p2	BC065108|Cbln3|56410|cerebellin 3 precursor protein	NM_019820|Cbln3|56410|cerebellin 3 precursor protein
mm9_v1_chr14_-_30821981_30822017	0.123189	NHLH1,2.p2	BC026546|Il17rb|50905|interleukin 17 receptor B	AF208108|Il17rb|50905|interleukin 17 receptor B	AF208109|Il17rb|50905|interleukin 17 receptor B	AK050139|Il17rb|50905|interleukin 17 receptor B
mm9_v1_chr1_-_174149963_174149971	0.123126	NHLH1,2.p2	BC064057|Casq1|12372|calsequestrin 1	U93291|Casq1|12372|calsequestrin 1
mm9_v1_chr1_+_10029834_10029872	0.122398	NHLH1,2.p2	AK032310|Cspp1|211660|centrosome and spindle pole associated protein 1	AK077173|Cspp1|211660|centrosome and spindle pole associated protein 1	AK013065|Cspp1|211660|centrosome and spindle pole associated protein 1	AK015133|Cspp1|211660|centrosome and spindle pole associated protein 1
mm9_v1_chr5_+_29895742_29895846	0.122231	NHLH1,2.p2	AK046056|Ube3c|100763|ubiquitin protein ligase E3C	NM_133907|Ube3c|100763|ubiquitin protein ligase E3C	AK122187|Ube3c|100763|ubiquitin protein ligase E3C
mm9_v1_chr5_+_21049368_21049436	0.122208	NHLH1,2.p2	AK014767|Lrrc17|74511|leucine rich repeat containing 17	AK018071|Lrrc17|74511|leucine rich repeat containing 17	BC030317|Lrrc17|74511|leucine rich repeat containing 17
mm9_v1_chrY_-_622984_622997	0.122104	NHLH1,2.p2	BC021453|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
mm9_v1_chr10_+_80820218_80820329	0.122067	NHLH1,2.p2	AK154902|F630110N24Rik|73822|RIKEN cDNA F630110N24 gene	AK170185|F630110N24Rik|73822|RIKEN cDNA F630110N24 gene	AK149678|F630110N24Rik|73822|RIKEN cDNA F630110N24 gene	AK154386|F630110N24Rik|73822|RIKEN cDNA F630110N24 gene	AK171084|F630110N24Rik|73822|RIKEN cDNA F630110N24 gene	BC118620|F630110N24Rik|73822|RIKEN cDNA F630110N24 gene	BC119790|F630110N24Rik|73822|RIKEN cDNA F630110N24 gene	NM_028657|F630110N24Rik|73822|RIKEN cDNA F630110N24 gene
mm9_v1_chr1_+_34636537_34636571	0.121486	NHLH1,2.p2	NM_213727|Fam123c|211383|family with sequence similarity 123, member C	BC070435|Fam123c|211383|family with sequence similarity 123, member C
mm9_v1_chr18_+_67624517_67624527	0.121289	NHLH1,2.p2	AK143220|Slmo1|225655|slowmo homolog 1 (Drosophila)
mm9_v1_chr1_+_137732961_137733002	0.121288	NHLH1,2.p2	NM_001130174|Tnnt2|21956|troponin T2, cardiac	NM_001130175|Tnnt2|21956|troponin T2, cardiac	NM_001130177|Tnnt2|21956|troponin T2, cardiac	NM_001130178|Tnnt2|21956|troponin T2, cardiac	NM_001130179|Tnnt2|21956|troponin T2, cardiac	NM_001130180|Tnnt2|21956|troponin T2, cardiac	NM_001130181|Tnnt2|21956|troponin T2, cardiac	NM_011619|Tnnt2|21956|troponin T2, cardiac	AK086260|Tnnt2|21956|troponin T2, cardiac	AK146945|Tnnt2|21956|troponin T2, cardiac	AK163786|Tnnt2|21956|troponin T2, cardiac	AK164592|Tnnt2|21956|troponin T2, cardiac	AK168393|Tnnt2|21956|troponin T2, cardiac	AK169061|Tnnt2|21956|troponin T2, cardiac	L47600|Tnnt2|21956|troponin T2, cardiac	L47599|Tnnt2|21956|troponin T2, cardiac	L47552|Tnnt2|21956|troponin T2, cardiac	L47551|Tnnt2|21956|troponin T2, cardiac	L47549|Tnnt2|21956|troponin T2, cardiac	NM_001136083|Tnnt2|21956|troponin T2, cardiac	L47550|Tnnt2|21956|troponin T2, cardiac
mm9_v1_chr13_+_3537514_3537611	0.12107	NHLH1,2.p2	L36314|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2
mm9_v1_chr15_+_98885599_98885611	0.12087	NHLH1,2.p2	AK149021|Prph|19132|peripherin	NM_001163588|Prph|19132|peripherin	NM_001163589|Prph|19132|peripherin	NM_013639|Prph|19132|peripherin	BC046291|Prph|19132|peripherin
mm9_v1_chr7_+_52151432_52151509	0.12043	NHLH1,2.p2	NM_027376|Fuz|70300|fuzzy homolog (Drosophila)	AK134650|Fuz|70300|fuzzy homolog (Drosophila)	AK168939|Fuz|70300|fuzzy homolog (Drosophila)	AK045745|Fuz|70300|fuzzy homolog (Drosophila)	AK033247|Fuz|70300|fuzzy homolog (Drosophila)	BC045601|Fuz|70300|fuzzy homolog (Drosophila)	AK011195|Fuz|70300|fuzzy homolog (Drosophila)
mm9_v1_chr5_+_117769274_117769326	0.120378	NHLH1,2.p2	NM_001033311|Vsig10|231668|V-set and immunoglobulin domain containing 10	AK138152|Vsig10|231668|V-set and immunoglobulin domain containing 10
mm9_v1_chr7_+_51231430_51231466	0.120275	NHLH1,2.p2	M17962|Klk1b9|13648|kallikrein 1-related peptidase b9	NM_010116|Klk1b9|13648|kallikrein 1-related peptidase b9	BC024624|Klk1b9|13648|kallikrein 1-related peptidase b9	BC048869|Klk1b9|13648|kallikrein 1-related peptidase b9
mm9_v1_chr12_+_35669432_35669444	0.1199	NHLH1,2.p2	AK077203|Prps1l1|75456|phosphoribosyl pyrophosphate synthetase 1-like 1	NM_029294|Prps1l1|75456|phosphoribosyl pyrophosphate synthetase 1-like 1	BC109355|Prps1l1|75456|phosphoribosyl pyrophosphate synthetase 1-like 1
mm9_v1_chr12_+_85455319_85455327	0.118757	NHLH1,2.p2	AK005826|Dnalc1|105000|dynein, axonemal, light chain 1	BC070454|Dnalc1|105000|dynein, axonemal, light chain 1
mm9_v1_chr7_-_30980042_30980100	0.1185	NHLH1,2.p2	AF058298|Capns1|12336|calpain, small subunit 1	BC018352|Capns1|12336|calpain, small subunit 1	BC090988|Capns1|12336|calpain, small subunit 1	NM_009795|Capns1|12336|calpain, small subunit 1
mm9_v1_chr13_-_62989595_62989637	0.118392	NHLH1,2.p2	AJ132693|Fbp1|14121|fructose bisphosphatase 1	NM_019395|Fbp1|14121|fructose bisphosphatase 1
mm9_v1_chr3_-_105804304_105804414	0.118228	NHLH1,2.p2	HM237137|1700027A23Rik|100503311|RIKEN cDNA 1700027A23 gene	AK006407|1700027A23Rik|100503311|RIKEN cDNA 1700027A23 gene	NM_029604|1700027A23Rik|100503311|RIKEN cDNA 1700027A23 gene
mm9_v1_chr15_-_81021165_81021194	0.118031	NHLH1,2.p2	AK044188|Mkl1|223701|MKL (megakaryoblastic leukemia)/myocardin-like 1	AK155821|Mkl1|223701|MKL (megakaryoblastic leukemia)/myocardin-like 1	NM_001082536|Mkl1|223701|MKL (megakaryoblastic leukemia)/myocardin-like 1
mm9_v1_chr17_+_31433694_31433709	0.117471	NHLH1,2.p2	AK033656|Slc37a1|224674|solute carrier family 37 (glycerol-3-phosphate transporter), member 1
mm9_v1_chr17_-_15635203_15635292	0.116825	NHLH1,2.p2	AK077520|Psmb1|19170|proteasome (prosome, macropain) subunit, beta type 1	AK132161|Psmb1|19170|proteasome (prosome, macropain) subunit, beta type 1	NM_011185|Psmb1|19170|proteasome (prosome, macropain) subunit, beta type 1	BC018351|Psmb1|19170|proteasome (prosome, macropain) subunit, beta type 1	X80686|Psmb1|19170|proteasome (prosome, macropain) subunit, beta type 1	U60824|Psmb1|19170|proteasome (prosome, macropain) subunit, beta type 1	AK167647|Psmb1|19170|proteasome (prosome, macropain) subunit, beta type 1	AK028265|Psmb1|19170|proteasome (prosome, macropain) subunit, beta type 1
mm9_v1_chr11_-_5641147_5641184	0.116452	NHLH1,2.p2	AK166495|Urgcp|72046|upregulator of cell proliferation	AK033577|Urgcp|72046|upregulator of cell proliferation	NM_178623|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr1_-_91911151_91911240	0.11635	NHLH1,2.p2	AY057054|Asb18|208372|ankyrin repeat and SOCS box-containing 18	BC107370|Asb18|208372|ankyrin repeat and SOCS box-containing 18	BC107371|Asb18|208372|ankyrin repeat and SOCS box-containing 18	BC127152|Asb18|208372|ankyrin repeat and SOCS box-containing 18	NM_139152|Asb18|208372|ankyrin repeat and SOCS box-containing 18	BC141295|Asb18|208372|ankyrin repeat and SOCS box-containing 18	BC145621|Asb18|208372|ankyrin repeat and SOCS box-containing 18
mm9_v1_chr17_+_34781733_34781827	0.116304	NHLH1,2.p2	AK146018|Fkbpl|56299|FK506 binding protein-like	BC046338|Fkbpl|56299|FK506 binding protein-like	NM_019873|Fkbpl|56299|FK506 binding protein-like
mm9_v1_chrX_+_13044797_13044798	0.116285	NHLH1,2.p2	BC035244|Nyx|236690|nyctalopin	NM_173415|Nyx|236690|nyctalopin	BC048381|Nyx|236690|nyctalopin
mm9_v1_chr6_+_71443984_71443996	0.115531	NHLH1,2.p2	BC137624|Rnf103|22644|ring finger protein 103
mm9_v1_chr10_-_95026390_95026668	0.11544	NHLH1,2.p2	CT010342|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4	AK211623|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4	AK216782|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4	BC027209|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4
mm9_v1_chr4_+_137990567_137990674	0.115245	NHLH1,2.p2	NM_026689|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1	AK170149|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1	AK002416|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1	AK083295|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1	BC019516|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1	AK044088|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1	AK076419|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1	AK153956|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1	EU935009|Mul1|68350|mitochondrial ubiquitin ligase activator of NFKB 1
mm9_v1_chr10_-_76881008_76881043	0.115229	NHLH1,2.p2	AK138318|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AK147298|Adarb1|110532|adenosine deaminase, RNA-specific, B1	NM_001024837|Adarb1|110532|adenosine deaminase, RNA-specific, B1	NM_130895|Adarb1|110532|adenosine deaminase, RNA-specific, B1
mm9_v1_chr1_+_74901489_74901677	0.114904	NHLH1,2.p2	NM_009872|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100712|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC103550|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100714|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100715|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)
mm9_v1_chr1_-_98768703_98768747	0.114814	NHLH1,2.p2	BC119022|Slco4c1|227394|solute carrier organic anion transporter family, member 4C1	AK049944|Slco4c1|227394|solute carrier organic anion transporter family, member 4C1	AK049253|Slco4c1|227394|solute carrier organic anion transporter family, member 4C1	AY654588|Slco4c1|227394|solute carrier organic anion transporter family, member 4C1	NM_172658|Slco4c1|227394|solute carrier organic anion transporter family, member 4C1
mm9_v1_chr4_-_71861756_71861911	0.114541	NHLH1,2.p2	BC057573|Tle1|21885|transducin-like enhancer of split 1, homolog of Drosophila E(spl)	AK048515|Tle1|21885|transducin-like enhancer of split 1, homolog of Drosophila E(spl)	AK082499|Tle1|21885|transducin-like enhancer of split 1, homolog of Drosophila E(spl)	AK046402|Tle1|21885|transducin-like enhancer of split 1, homolog of Drosophila E(spl)	AY155196|Tle1|21885|transducin-like enhancer of split 1, homolog of Drosophila E(spl)
mm9_v1_chr14_+_31699648_31699721	0.114434	NHLH1,2.p2	NM_001159299|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	NM_018746|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	AK004862|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	AK004893|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	AK050016|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	AK050270|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	AF023919|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	BC016500|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	BC021459|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	BC092258|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	BC094457|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4
mm9_v1_chr2_+_143741243_143741349	0.114309	NHLH1,2.p2	AK078898|Dstn|56431|destrin	AB025406|Dstn|56431|destrin	BC131926|Dstn|56431|destrin
mm9_v1_chr18_+_37581071_37581102	0.114182	NHLH1,2.p2	AK078189|Pcdhb11|93882|protocadherin beta 11	NM_053136|Pcdhb11|93882|protocadherin beta 11	AK160803|Pcdhb11|93882|protocadherin beta 11
mm9_v1_chr14_+_35633312_35633351	0.11396	NHLH1,2.p2	NM_008166|Grid1|14803|glutamate receptor, ionotropic, delta 1	AK138279|Grid1|14803|glutamate receptor, ionotropic, delta 1	D10171|Grid1|14803|glutamate receptor, ionotropic, delta 1
mm9_v1_chr15_-_57723993_57724037	0.113912	NHLH1,2.p2	AK011499|Derl1|67819|Der1-like domain family, member 1	AK161702|Derl1|67819|Der1-like domain family, member 1	BC003454|Derl1|67819|Der1-like domain family, member 1	BC085490|Derl1|67819|Der1-like domain family, member 1
mm9_v1_chr2_-_166821559_166821808	0.113102	NHLH1,2.p2	AK151835|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK152744|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK152269|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK041781|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK159602|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	BC082277|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK167637|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK005002|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK030788|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK030890|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK160979|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK139532|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	BC012959|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK145826|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK159781|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	NM_001109905|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	NM_001109906|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	NM_011490|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AF061942|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)
mm9_v1_chr10_-_122633922_122634056	0.112275	NHLH1,2.p2	L10903|Usp15|14479|ubiquitin specific peptidase 15	AF468037|Usp15|14479|ubiquitin specific peptidase 15	AK145749|Usp15|14479|ubiquitin specific peptidase 15	NM_027604|Usp15|14479|ubiquitin specific peptidase 15	AK046332|Usp15|14479|ubiquitin specific peptidase 15	AK083303|Usp15|14479|ubiquitin specific peptidase 15	AK133852|Usp15|14479|ubiquitin specific peptidase 15	AK122301|Usp15|14479|ubiquitin specific peptidase 15	BC050042|Usp15|14479|ubiquitin specific peptidase 15	AK164382|Usp15|14479|ubiquitin specific peptidase 15	AK163315|Usp15|14479|ubiquitin specific peptidase 15	AK168755|Usp15|14479|ubiquitin specific peptidase 15	AK161469|Usp15|14479|ubiquitin specific peptidase 15	AK161957|Usp15|14479|ubiquitin specific peptidase 15	AK163284|Usp15|14479|ubiquitin specific peptidase 15
mm9_v1_chr6_+_115494665_115494729	0.112035	NHLH1,2.p2	BC061473|Tsen2|381802|tRNA splicing endonuclease 2 homolog (S. cerevisiae)	NM_199033|Tsen2|381802|tRNA splicing endonuclease 2 homolog (S. cerevisiae)	AK044190|Tsen2|381802|tRNA splicing endonuclease 2 homolog (S. cerevisiae)	AK134697|Tsen2|381802|tRNA splicing endonuclease 2 homolog (S. cerevisiae)
mm9_v1_chr17_-_5418711_5418766	0.111131	NHLH1,2.p2	AK077089|Ldhal6b|106557|lactate dehydrogenase A-like 6B	BC061193|Ldhal6b|106557|lactate dehydrogenase A-like 6B	AY280363|Ldhal6b|106557|lactate dehydrogenase A-like 6B	NM_175349|Ldhal6b|106557|lactate dehydrogenase A-like 6B
mm9_v1_chr15_+_34236408_34236565	0.111112	NHLH1,2.p2	AK035102|Matn2|17181|matrilin 2	NM_016762|Matn2|17181|matrilin 2	AK083151|Matn2|17181|matrilin 2	AK138211|Matn2|17181|matrilin 2	U69262|Matn2|17181|matrilin 2	AK163818|Matn2|17181|matrilin 2	AK081339|Matn2|17181|matrilin 2	BC092298|Matn2|17181|matrilin 2	BC005429|Matn2|17181|matrilin 2
mm9_v1_chr11_-_119960005_119960044	0.111049	NHLH1,2.p2	AK154660|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	AK019105|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	BC137580|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	BC144724|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	NM_183137|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene
mm9_v1_chr4_-_57928618_57928638	0.110962	NHLH1,2.p2	AK033446|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene
mm9_v1_chr12_+_88288287_88288431	0.110292	NHLH1,2.p2	NM_173735|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	AK165964|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	AK154476|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	BC026384|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	AK122546|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	AK160643|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene
mm9_v1_chr4_-_141179720_141179764	0.110241	NHLH1,2.p2	BC089627|Slc25a34|384071|solute carrier family 25, member 34	AK085913|Slc25a34|384071|solute carrier family 25, member 34	AK142924|Slc25a34|384071|solute carrier family 25, member 34	NM_001013780|Slc25a34|384071|solute carrier family 25, member 34
mm9_v1_chr13_-_33997576_33997576	0.110215	NHLH1,2.p2	BC062169|Serpinb6c|97848|serine (or cysteine) peptidase inhibitor, clade B, member 6c	NM_148942|Serpinb6c|97848|serine (or cysteine) peptidase inhibitor, clade B, member 6c
mm9_v1_chr14_-_55482884_55482994	0.110112	NHLH1,2.p2	AK129361|Homez|239099|homeodomain leucine zipper-encoding gene	AY258064|Homez|239099|homeodomain leucine zipper-encoding gene	NM_001177705|Homez|239099|homeodomain leucine zipper-encoding gene
mm9_v1_chr7_-_133942767_133942800	0.109965	NHLH1,2.p2	NM_007438|Aldoa|11674|aldolase A, fructose-bisphosphate
mm9_v1_chr1_-_170361985_170362027	0.109931	NHLH1,2.p2	AF020196|Pbx1|18514|pre B-cell leukemia transcription factor 1	BC058390|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr4_-_126645421_126645456	0.109337	NHLH1,2.p2	AK129137|Zmym4|67785|zinc finger, MYM-type 4
mm9_v1_chr16_-_18348136_18348153	0.109289	NHLH1,2.p2	AK133778|D16H22S680E|27883|DNA segment, Chr 16, human D22S680E, expressed
mm9_v1_chr1_+_57831651_57831771	0.109215	NHLH1,2.p2	NM_144882|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	AK012791|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	AK019292|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	AK161988|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	AK031266|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	BC021879|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	AK032169|Spats2l|67198|spermatogenesis associated, serine-rich 2-like
mm9_v1_chr5_-_52957343_52957374	0.108666	NHLH1,2.p2	AY841361|Lgi2|246316|leucine-rich repeat LGI family, member 2
mm9_v1_chr15_-_77241505_77241552	0.1082	NHLH1,2.p2	NM_001162883|Apol9a|223672|apolipoprotein L 9a
mm9_v1_chr10_-_25255955_25256077	0.107596	NHLH1,2.p2	AK008073|2010003K15Rik|75606|RIKEN cDNA 2010003K15 gene	NM_001195596|2010003K15Rik|75606|RIKEN cDNA 2010003K15 gene
mm9_v1_chr7_+_4088622_4088685	0.107515	NHLH1,2.p2	AK170629|Leng8|232798|leukocyte receptor cluster (LRC) member 8	AK034310|Leng8|232798|leukocyte receptor cluster (LRC) member 8	NM_172736|Leng8|232798|leukocyte receptor cluster (LRC) member 8	AK085304|Leng8|232798|leukocyte receptor cluster (LRC) member 8	AK158293|Leng8|232798|leukocyte receptor cluster (LRC) member 8	BC066768|Leng8|232798|leukocyte receptor cluster (LRC) member 8	BC042658|Leng8|232798|leukocyte receptor cluster (LRC) member 8	BC041775|Leng8|232798|leukocyte receptor cluster (LRC) member 8
mm9_v1_chr6_-_41396095_41396143	0.107134	NHLH1,2.p2	NM_001103153|Gm10334|100040233|predicted gene 10334	BC141304|Prss3|22073|protease, serine, 3
mm9_v1_chr19_-_38199267_38199278	0.107051	NHLH1,2.p2	BC031809|Rbp4|19662|retinol binding protein 4, plasma
mm9_v1_chr3_+_89856713_89856975	0.106459	NHLH1,2.p2	NM_025762|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	NM_027500|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK034749|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK150324|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK150423|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK150831|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK151002|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK151263|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK017833|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	BC018438|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK051238|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	BC027190|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK214769|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AY533135|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene
mm9_v1_chr14_-_22562082_22562100	0.106449	NHLH1,2.p2	AF237620|Dusp13|27389|dual specificity phosphatase 13	AK006247|Dusp13|27389|dual specificity phosphatase 13	NM_013849|Dusp13|27389|dual specificity phosphatase 13
mm9_v1_chr16_+_45094214_45094287	0.106394	NHLH1,2.p2	AB075019|Ccdc80|67896|coiled-coil domain containing 80
mm9_v1_chr8_+_123209286_123209298	0.106328	NHLH1,2.p2	
mm9_v1_chr13_+_23776066_23776084	0.105668	NHLH1,2.p2	AK011516|Hist1h2bc|68024|histone cluster 1, H2bc	NM_023422|Hist1h2bc|68024|histone cluster 1, H2bc	AK005191|Hist1h2bc|68024|histone cluster 1, H2bc	AK005407|Hist1h2bc|68024|histone cluster 1, H2bc	BC019673|Hist1h2bc|68024|histone cluster 1, H2bc	BC082774|Hist1h2bc|68024|histone cluster 1, H2bc
mm9_v1_chr11_-_99299443_99299468	0.10565	NHLH1,2.p2	AF473907|Krt20|66809|keratin 20	BC057172|Krt20|66809|keratin 20	AK018567|Krt20|66809|keratin 20	NM_023256|Krt20|66809|keratin 20
mm9_v1_chr17_+_49071906_49072030	0.104932	NHLH1,2.p2	BC139418|Lrfn2|70530|leucine rich repeat and fibronectin type III domain containing 2	NM_027452|Lrfn2|70530|leucine rich repeat and fibronectin type III domain containing 2	AK122476|Lrfn2|70530|leucine rich repeat and fibronectin type III domain containing 2	AK044375|Lrfn2|70530|leucine rich repeat and fibronectin type III domain containing 2
mm9_v1_chr7_+_28345494_28345525	0.104498	NHLH1,2.p2	AK077369|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	NM_001122767|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	AK009941|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	AK140814|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	AK009456|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene
mm9_v1_chr2_+_119798434_119798434	0.104084	NHLH1,2.p2	BC070449|Mapkbp1|26390|mitogen-activated protein kinase binding protein 1	NM_011941|Mapkbp1|26390|mitogen-activated protein kinase binding protein 1
mm9_v1_chr17_-_35342157_35342435	0.103969	NHLH1,2.p2	AK080308|Lta|16992|lymphotoxin A	AK153694|Lta|16992|lymphotoxin A	BC099464|Lta|16992|lymphotoxin A	NM_010735|Lta|16992|lymphotoxin A	AK156659|Lta|16992|lymphotoxin A
mm9_v1_chr6_+_48791481_48791563	0.103704	NHLH1,2.p2	NM_025326|Tmem176a|66058|transmembrane protein 176A	AK002546|Tmem176a|66058|transmembrane protein 176A	AK004315|Tmem176a|66058|transmembrane protein 176A	AK165660|Tmem176a|66058|transmembrane protein 176A	AK150576|Tmem176a|66058|transmembrane protein 176A	AK079378|Tmem176a|66058|transmembrane protein 176A	BC010831|Tmem176a|66058|transmembrane protein 176A	AK162991|Tmem176a|66058|transmembrane protein 176A
mm9_v1_chr10_-_80170037_80170073	0.103606	NHLH1,2.p2	AK208513|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit
mm9_v1_chr14_-_37862119_37862149	0.103182	NHLH1,2.p2	AF076930|Rgr|57811|retinal G protein coupled receptor	BC086689|Rgr|57811|retinal G protein coupled receptor	BC119055|Rgr|57811|retinal G protein coupled receptor	BC082611|Rgr|57811|retinal G protein coupled receptor	AK044450|Rgr|57811|retinal G protein coupled receptor	AK044649|Rgr|57811|retinal G protein coupled receptor	AK149272|Rgr|57811|retinal G protein coupled receptor	NM_021340|Rgr|57811|retinal G protein coupled receptor
mm9_v1_chr2_+_125073450_125073494	0.102895	NHLH1,2.p2	AK152459|Dut|110074|deoxyuridine triphosphatase	AK011407|Dut|110074|deoxyuridine triphosphatase	AK003076|Dut|110074|deoxyuridine triphosphatase	BC053693|Dut|110074|deoxyuridine triphosphatase	AK153285|Dut|110074|deoxyuridine triphosphatase
mm9_v1_chr6_-_24614884_24614963	0.1027	NHLH1,2.p2	BC019951|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	AK140189|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	AK159052|Wasl|73178|Wiskott-Aldrich syndrome-like (human)
mm9_v1_chr11_+_29426434_29426502	0.102681	NHLH1,2.p2	AK136344|Mtif2|76784|mitochondrial translational initiation factor 2	AK160724|Mtif2|76784|mitochondrial translational initiation factor 2	AK019087|Mtif2|76784|mitochondrial translational initiation factor 2	AK010766|Mtif2|76784|mitochondrial translational initiation factor 2	AK146961|Mtif2|76784|mitochondrial translational initiation factor 2	NM_133767|Mtif2|76784|mitochondrial translational initiation factor 2	BC016590|Mtif2|76784|mitochondrial translational initiation factor 2	BC066819|Mtif2|76784|mitochondrial translational initiation factor 2
mm9_v1_chr7_-_35015297_35015308	0.102654	NHLH1,2.p2	BC086640|Gpi1|14751|glucose phosphate isomerase 1
mm9_v1_chr10_+_5914137_5914281	0.102581	NHLH1,2.p2	NM_025343|Rmnd1|66084|required for meiotic nuclear division 1 homolog (S. cerevisiae)	AK169025|Rmnd1|66084|required for meiotic nuclear division 1 homolog (S. cerevisiae)	AK075603|Rmnd1|66084|required for meiotic nuclear division 1 homolog (S. cerevisiae)	BC027299|Rmnd1|66084|required for meiotic nuclear division 1 homolog (S. cerevisiae)	AK007323|Rmnd1|66084|required for meiotic nuclear division 1 homolog (S. cerevisiae)
mm9_v1_chr3_+_103379203_103379300	0.102382	NHLH1,2.p2	NM_018800|Syt6|54524|synaptotagmin VI	BC050760|Syt6|54524|synaptotagmin VI	AB026803|Syt6|54524|synaptotagmin VI	AB026809|Syt6|54524|synaptotagmin VI	AB026810|Syt6|54524|synaptotagmin VI
mm9_v1_chr3_-_64091338_64091338	0.102171	NHLH1,2.p2	NM_001104614|Vmn2r3|637004|vomeronasal 2, receptor 3
mm9_v1_chr15_-_76552594_76552602	0.101931	NHLH1,2.p2	AK048678|Lrrc24|378937|leucine rich repeat containing 24	AK078176|Lrrc24|378937|leucine rich repeat containing 24	NM_198119|Lrrc24|378937|leucine rich repeat containing 24
mm9_v1_chr6_+_83051509_83051651	0.10182	NHLH1,2.p2	NM_001081266|Ccdc142|243510|coiled-coil domain containing 142	AK038734|Ccdc142|243510|coiled-coil domain containing 142
mm9_v1_chr18_-_38409826_38409853	0.101587	NHLH1,2.p2	AK050707|1700086O06Rik|73516|RIKEN cDNA 1700086O06 gene	AK078369|1700086O06Rik|73516|RIKEN cDNA 1700086O06 gene	AK007023|1700086O06Rik|73516|RIKEN cDNA 1700086O06 gene
mm9_v1_chr4_+_57858096_57858154	0.101504	NHLH1,2.p2	NM_001035532|Akap2|11641|A kinase (PRKA) anchor protein 2	NM_009649|Akap2|11641|A kinase (PRKA) anchor protein 2	AK041873|Akap2|11641|A kinase (PRKA) anchor protein 2	AK147420|Akap2|11641|A kinase (PRKA) anchor protein 2	BC003735|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr14_+_54878898_54878980	0.101426	NHLH1,2.p2	AK152595|Abhd4|105501|abhydrolase domain containing 4	AK049366|Abhd4|105501|abhydrolase domain containing 4	AK164655|Abhd4|105501|abhydrolase domain containing 4	AK161853|Abhd4|105501|abhydrolase domain containing 4	BC017532|Abhd4|105501|abhydrolase domain containing 4	NM_134076|Abhd4|105501|abhydrolase domain containing 4
mm9_v1_chr3_-_85550130_85550130	0.100497	NHLH1,2.p2	NM_172682|Fam160a1|229488|family with sequence similarity 160, member A1
mm9_v1_chr7_-_4959521_4959601	0.0999835	NHLH1,2.p2	AK182118|Fiz1|23877|Flt3 interacting zinc finger protein 1	AK177756|Fiz1|23877|Flt3 interacting zinc finger protein 1
mm9_v1_chr16_+_45094196_45094202	0.0998744	NHLH1,2.p2	AK032359|Ccdc80|67896|coiled-coil domain containing 80
mm9_v1_chr9_+_107982741_107982829	0.0995936	NHLH1,2.p2	NM_008243|Mst1|15235|macrophage stimulating 1 (hepatocyte growth factor-like)	BC010551|Mst1|15235|macrophage stimulating 1 (hepatocyte growth factor-like)	AK040934|Mst1|15235|macrophage stimulating 1 (hepatocyte growth factor-like)	AK134222|Mst1|15235|macrophage stimulating 1 (hepatocyte growth factor-like)	BC051393|Mst1|15235|macrophage stimulating 1 (hepatocyte growth factor-like)	AK144824|Mst1|15235|macrophage stimulating 1 (hepatocyte growth factor-like)	M74181|Mst1|15235|macrophage stimulating 1 (hepatocyte growth factor-like)
mm9_v1_chr18_+_46757333_46757491	0.0993176	NHLH1,2.p2	AK019451|Eif1a|13664|eukaryotic translation initiation factor 1A	NM_010120|Eif1a|13664|eukaryotic translation initiation factor 1A	AK013268|Eif1a|13664|eukaryotic translation initiation factor 1A	AK150651|Eif1a|13664|eukaryotic translation initiation factor 1A	AF026481|Eif1a|13664|eukaryotic translation initiation factor 1A	AK150673|Eif1a|13664|eukaryotic translation initiation factor 1A	AK150677|Eif1a|13664|eukaryotic translation initiation factor 1A	AK009026|Eif1a|13664|eukaryotic translation initiation factor 1A	AK166368|Eif1a|13664|eukaryotic translation initiation factor 1A	BC027437|Eif1a|13664|eukaryotic translation initiation factor 1A	AK167333|Eif1a|13664|eukaryotic translation initiation factor 1A
mm9_v1_chr17_+_46787285_46787649	0.0992998	NHLH1,2.p2	AK155583|Cul7|66515|cullin 7	AK170580|Cul7|66515|cullin 7	NM_025611|Cul7|66515|cullin 7	AK082134|Cul7|66515|cullin 7	BC138998|Cul7|66515|cullin 7	BC139000|Cul7|66515|cullin 7	AK166135|Cul7|66515|cullin 7	AK170808|Cul7|66515|cullin 7	AK155454|Cul7|66515|cullin 7	AK144856|Cul7|66515|cullin 7	AK147156|Cul7|66515|cullin 7	AK147905|Cul7|66515|cullin 7
mm9_v1_chr19_+_4192077_4192212	0.0991842	NHLH1,2.p2	AK151582|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK150344|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK152051|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK152585|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK090070|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167538|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK159575|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	BC014828|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	U25809|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167244|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167880|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167981|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	NM_031868|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK007932|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK152667|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK028392|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK153517|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK202833|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform
mm9_v1_chr5_+_25265761_25265876	0.0989124	NHLH1,2.p2	BC053106|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	BC082279|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	NM_001004365|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	AK144936|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	AK035798|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)
mm9_v1_chr2_+_90687308_90687523	0.0987964	NHLH1,2.p2	AK008712|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	NM_019758|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	BC028929|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK016000|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK011814|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	BC038899|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	BC038916|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK162807|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AF176009|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	BC065145|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK164169|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK011874|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK151553|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK008487|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK161441|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK007757|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK008463|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK011785|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK075890|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK003100|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK184198|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK215565|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK217615|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)
mm9_v1_chr16_-_8425201_8425228	0.098381	NHLH1,2.p2	BC027071|Tmem114|74720|transmembrane protein 114	AK015757|Tmem114|74720|transmembrane protein 114	NM_029070|Tmem114|74720|transmembrane protein 114
mm9_v1_chr14_+_55045740_55045780	0.0983695	NHLH1,2.p2	AK004194|Mrpl52|68836|mitochondrial ribosomal protein L52	NM_026851|Mrpl52|68836|mitochondrial ribosomal protein L52	AK150806|Mrpl52|68836|mitochondrial ribosomal protein L52	AK151615|Mrpl52|68836|mitochondrial ribosomal protein L52	AK164629|Mrpl52|68836|mitochondrial ribosomal protein L52	AK081551|Mrpl52|68836|mitochondrial ribosomal protein L52	BC028522|Mrpl52|68836|mitochondrial ribosomal protein L52	AK152876|Mrpl52|68836|mitochondrial ribosomal protein L52
mm9_v1_chr1_-_128727208_128727208	0.0980986	NHLH1,2.p2	NM_001081756|Nckap5|210356|NCK-associated protein 5	NM_176957|Nckap5|210356|NCK-associated protein 5
mm9_v1_chr4_+_119406425_119406450	0.0978282	NHLH1,2.p2	BC024097|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	BC049859|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3
mm9_v1_chr15_-_75844738_75844807	0.0977573	NHLH1,2.p2	BC117947|Fam83h|105732|family with sequence similarity 83, member H	BC117948|Fam83h|105732|family with sequence similarity 83, member H	AK035531|Fam83h|105732|family with sequence similarity 83, member H	NM_134087|Fam83h|105732|family with sequence similarity 83, member H
mm9_v1_chr4_-_46417054_46417104	0.0974987	NHLH1,2.p2	AF269248|Hemgn|93966|hemogen	NM_053149|Hemgn|93966|hemogen	AK171906|Hemgn|93966|hemogen
mm9_v1_chr1_+_91041418_91041587	0.0972055	NHLH1,2.p2	AK185674|Sh3bp4|98402|SH3-domain binding protein 4	AK043259|Sh3bp4|98402|SH3-domain binding protein 4
mm9_v1_chr12_+_81216835_81216867	0.0966496	NHLH1,2.p2	AK040614|1300014J16Rik|74160|RIKEN cDNA 1300014J16 gene	AK005005|1300014J16Rik|74160|RIKEN cDNA 1300014J16 gene
mm9_v1_chr14_-_103746016_103746030	0.0965204	NHLH1,2.p2	AK149225|Mycbp2|105689|MYC binding protein 2	NM_207215|Mycbp2|105689|MYC binding protein 2	AK048441|Mycbp2|105689|MYC binding protein 2	AK081652|Mycbp2|105689|MYC binding protein 2
mm9_v1_chr7_+_51368048_51368052	0.0962454	NHLH1,2.p2	BC106155|Klk1b22|13646|kallikrein 1-related peptidase b22	NM_010114|Klk1b22|13646|kallikrein 1-related peptidase b22
mm9_v1_chr7_-_35015309_35015367	0.096184	NHLH1,2.p2	AK147124|Gpi1|14751|glucose phosphate isomerase 1	NM_008155|Gpi1|14751|glucose phosphate isomerase 1
mm9_v1_chr10_-_117183413_117183498	0.0959347	NHLH1,2.p2	BC057101|Slc35e3|215436|solute carrier family 35, member E3	NM_029875|Slc35e3|215436|solute carrier family 35, member E3	BC006601|Slc35e3|215436|solute carrier family 35, member E3
mm9_v1_chr8_-_72240722_72240846	0.0958146	NHLH1,2.p2	BC079868|Zfp869|66869|zinc finger protein 869	AK088889|Zfp869|66869|zinc finger protein 869	AK134167|Zfp869|66869|zinc finger protein 869	AK004570|Zfp869|66869|zinc finger protein 869	AK030679|Zfp869|66869|zinc finger protein 869	AK136878|Zfp869|66869|zinc finger protein 869	NM_001039965|Zfp869|66869|zinc finger protein 869	NM_001039967|Zfp869|66869|zinc finger protein 869	AK083392|Zfp869|66869|zinc finger protein 869
mm9_v1_chr13_-_96145269_96145292	0.0956534	NHLH1,2.p2	AK017248|Aggf1|66549|angiogenic factor with G patch and FHA domains 1	AK008168|Aggf1|66549|angiogenic factor with G patch and FHA domains 1	AK008174|Aggf1|66549|angiogenic factor with G patch and FHA domains 1	AK008399|Aggf1|66549|angiogenic factor with G patch and FHA domains 1	AY500995|Aggf1|66549|angiogenic factor with G patch and FHA domains 1	BC052410|Aggf1|66549|angiogenic factor with G patch and FHA domains 1	NM_025630|Aggf1|66549|angiogenic factor with G patch and FHA domains 1
mm9_v1_chr3_+_89019108_89019113	0.0956142	NHLH1,2.p2	NM_013691|Thbs3|21827|thrombospondin 3
mm9_v1_chr13_-_8870975_8870975	0.0953005	NHLH1,2.p2	NM_001039388|Wdr37|207615|WD repeat domain 37
mm9_v1_chr9_+_23027995_23028014	0.09497	NHLH1,2.p2	AY263358|Bmper|73230|BMP-binding endothelial regulator	BC066153|Bmper|73230|BMP-binding endothelial regulator
mm9_v1_chr17_-_20185168_20185168	0.0946375	NHLH1,2.p2	NM_001104566|Vmn2r104|22313|vomeronasal 2, receptor 104
mm9_v1_chr5_+_106128934_106129078	0.0945192	NHLH1,2.p2	AK137459|Lrrc8d|231549|leucine rich repeat containing 8D	NM_001122768|Lrrc8d|231549|leucine rich repeat containing 8D	AK046249|Lrrc8d|231549|leucine rich repeat containing 8D	AK080722|Lrrc8d|231549|leucine rich repeat containing 8D
mm9_v1_chr17_-_74059735_74059792	0.094469	NHLH1,2.p2	AK049598|Galnt14|71685|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14	AK002747|Galnt14|71685|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14	NM_027864|Galnt14|71685|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14	AK090146|Galnt14|71685|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14
mm9_v1_chr4_-_88238283_88238288	0.0938885	NHLH1,2.p2	BC117775|Ifna9|15972|interferon alpha 9	BC117774|Ifna6|15969|interferon alpha 6	NM_010507|Ifna9|15972|interferon alpha 9
mm9_v1_chr11_+_107340794_107340940	0.0938671	NHLH1,2.p2	AK007619|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK005114|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK152240|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK011806|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK150910|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK152041|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK160283|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	BC004694|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK017843|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK167236|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK008646|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK009969|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK151242|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK162779|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	NM_025894|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK007680|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12
mm9_v1_chr3_+_95466898_95466910	0.0934209	NHLH1,2.p2	
mm9_v1_chr11_-_116000068_116000132	0.0931894	NHLH1,2.p2	BC002319|Mrpl38|60441|mitochondrial ribosomal protein L38	BC030739|Mrpl38|60441|mitochondrial ribosomal protein L38	AK088343|Mrpl38|60441|mitochondrial ribosomal protein L38	AK151598|Mrpl38|60441|mitochondrial ribosomal protein L38	AK010798|Mrpl38|60441|mitochondrial ribosomal protein L38
mm9_v1_chr17_-_80295336_80295462	0.0930192	NHLH1,2.p2	AK135988|Atl2|56298|atlastin GTPase 2	BC060501|Atl2|56298|atlastin GTPase 2	NM_019717|Atl2|56298|atlastin GTPase 2	AK038697|Atl2|56298|atlastin GTPase 2	AK043907|Atl2|56298|atlastin GTPase 2	AK008381|Atl2|56298|atlastin GTPase 2	NM_178050|Atl2|56298|atlastin GTPase 2
mm9_v1_chr18_+_80403581_80403591	0.0928873	NHLH1,2.p2	BC025053|Txnl4a|27366|thioredoxin-like 4A	NM_178604|Txnl4a|27366|thioredoxin-like 4A	AK171121|Txnl4a|27366|thioredoxin-like 4A
mm9_v1_chr8_+_26629214_26629332	0.0927585	NHLH1,2.p2	NM_001079908|Fgfr1|14182|fibroblast growth factor receptor 1	NM_001079909|Fgfr1|14182|fibroblast growth factor receptor 1	NM_010206|Fgfr1|14182|fibroblast growth factor receptor 1	AK049704|Fgfr1|14182|fibroblast growth factor receptor 1	S74765|Fgfr1|14182|fibroblast growth factor receptor 1	BC010200|Fgfr1|14182|fibroblast growth factor receptor 1
mm9_v1_chr14_-_56364390_56364415	0.0926039	NHLH1,2.p2	AK003958|Dhrs1|52585|dehydrogenase/reductase (SDR family) member 1
mm9_v1_chr3_+_30692217_30692274	0.0925687	NHLH1,2.p2	BC048532|Sec62|69276|SEC62 homolog (S. cerevisiae)	AK088093|Sec62|69276|SEC62 homolog (S. cerevisiae)	AK090078|Sec62|69276|SEC62 homolog (S. cerevisiae)	BC071243|Sec62|69276|SEC62 homolog (S. cerevisiae)	BC053504|Sec62|69276|SEC62 homolog (S. cerevisiae)	BC067202|Sec62|69276|SEC62 homolog (S. cerevisiae)
mm9_v1_chr8_+_107872704_107872772	0.0925583	NHLH1,2.p2	BC151197|Slc9a5|277973|solute carrier family 9 (sodium/hydrogen exchanger), member 5
mm9_v1_chr5_-_34512059_34512111	0.0923782	NHLH1,2.p2	BC025497|Haus3|231123|HAUS augmin-like complex, subunit 3	BC027393|Haus3|231123|HAUS augmin-like complex, subunit 3	NM_146159|Haus3|231123|HAUS augmin-like complex, subunit 3	BC141101|Poln|272158|DNA polymerase N	BC145378|Poln|272158|DNA polymerase N	AK133063|Poln|272158|DNA polymerase N	BC023882|Haus3|231123|HAUS augmin-like complex, subunit 3	AK049414|Haus3|231123|HAUS augmin-like complex, subunit 3	AY135562|Poln|272158|DNA polymerase N	NM_181857|Poln|272158|DNA polymerase N
mm9_v1_chr4_+_154932761_154932805	0.0923697	NHLH1,2.p2	AK194739|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK203879|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK205062|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr7_+_34806501_34806586	0.0918023	NHLH1,2.p2	BC132436|Abpa|11354|androgen binding protein alpha	BC016132|Abpa|11354|androgen binding protein alpha	NM_009596|Abpa|11354|androgen binding protein alpha	GU269231|Abpa|11354|androgen binding protein alpha
mm9_v1_chr7_-_104727924_104728026	0.0912898	NHLH1,2.p2	BC026557|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	AK007717|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	AK008195|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	AK007558|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	BC062811|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	NM_001177945|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	NM_001177946|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	NM_001177947|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	NM_183251|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene
mm9_v1_chr19_+_8893890_8893890	0.0912524	NHLH1,2.p2	NM_001081196|Hnrnpul2|68693|heterogeneous nuclear ribonucleoprotein U-like 2
mm9_v1_chr7_+_120909680_120909687	0.0911778	NHLH1,2.p2	AK134774|Spon1|233744|spondin 1, (f-spondin) extracellular matrix protein	AK146506|Spon1|233744|spondin 1, (f-spondin) extracellular matrix protein
mm9_v1_chr6_-_69599335_69599382	0.0908512	NHLH1,2.p2	
mm9_v1_chr13_-_107812106_107812216	0.0907698	NHLH1,2.p2	AK037037|Kif2a|16563|kinesin family member 2A	BC006803|Kif2a|16563|kinesin family member 2A	D12644|Kif2a|16563|kinesin family member 2A	NM_001145779|Kif2a|16563|kinesin family member 2A	NM_008442|Kif2a|16563|kinesin family member 2A
mm9_v1_chr3_-_9610062_9610137	0.0906252	NHLH1,2.p2	AF292939|Zfp704|170753|zinc finger protein 704	NM_133218|Zfp704|170753|zinc finger protein 704
mm9_v1_chr7_+_38968235_38968304	0.0905001	NHLH1,2.p2	NM_001085385|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	BC019834|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene
mm9_v1_chr15_+_57972893_57972996	0.0899361	NHLH1,2.p2	AK150578|Wdyhv1|76773|WDYHV motif containing 1	AK010831|Wdyhv1|76773|WDYHV motif containing 1	AK167510|Wdyhv1|76773|WDYHV motif containing 1	BC051524|Wdyhv1|76773|WDYHV motif containing 1	NM_029734|Wdyhv1|76773|WDYHV motif containing 1
mm9_v1_chr18_+_58038278_58038331	0.089765	NHLH1,2.p2	NM_009194|Slc12a2|20496|solute carrier family 12, member 2	U13174|Slc12a2|20496|solute carrier family 12, member 2
mm9_v1_chr19_+_4083489_4083518	0.0892098	NHLH1,2.p2	AF169156|Cabp2|29866|calcium binding protein 2	AF169157|Cabp2|29866|calcium binding protein 2	BC107029|Cabp2|29866|calcium binding protein 2	NM_001160252|Cabp2|29866|calcium binding protein 2	NM_013878|Cabp2|29866|calcium binding protein 2
mm9_v1_chr11_-_21270436_21270515	0.0891725	NHLH1,2.p2	BC023810|Ugp2|216558|UDP-glucose pyrophosphorylase 2	AK033445|Ugp2|216558|UDP-glucose pyrophosphorylase 2	AF424698|Ugp2|216558|UDP-glucose pyrophosphorylase 2	AK196595|Ugp2|216558|UDP-glucose pyrophosphorylase 2	AK197624|Ugp2|216558|UDP-glucose pyrophosphorylase 2	AK209798|Ugp2|216558|UDP-glucose pyrophosphorylase 2	BC061208|Ugp2|216558|UDP-glucose pyrophosphorylase 2
mm9_v1_chr1_-_74998224_74998295	0.0890475	NHLH1,2.p2	BC046984|Ihh|16147|Indian hedgehog	NM_010544|Ihh|16147|Indian hedgehog	AK144322|Ihh|16147|Indian hedgehog
mm9_v1_chr7_-_140913846_140914017	0.0889354	NHLH1,2.p2	BC024885|Dhx32|101437|DEAH (Asp-Glu-Ala-His) box polypeptide 32
mm9_v1_chr7_-_81158546_81158567	0.0882634	NHLH1,2.p2	X83562|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	BC096546|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	NM_009181|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
mm9_v1_chr12_-_117501430_117501510	0.0879282	NHLH1,2.p2	BC138916|Wdr60|217935|WD repeat domain 60	AK046002|Wdr60|217935|WD repeat domain 60	AK140242|Wdr60|217935|WD repeat domain 60	AK079764|Wdr60|217935|WD repeat domain 60	AK032986|Wdr60|217935|WD repeat domain 60	AK046399|Wdr60|217935|WD repeat domain 60	AK052482|Wdr60|217935|WD repeat domain 60	AK144138|Wdr60|217935|WD repeat domain 60	NM_146039|Wdr60|217935|WD repeat domain 60
mm9_v1_chr7_-_19383834_19383858	0.0878556	NHLH1,2.p2	BC099467|Psg19|26439|pregnancy specific glycoprotein 19	AK145915|Psg19|26439|pregnancy specific glycoprotein 19	NM_011964|Psg19|26439|pregnancy specific glycoprotein 19	X98111|Psg19|26439|pregnancy specific glycoprotein 19	X98112|Psg19|26439|pregnancy specific glycoprotein 19
mm9_v1_chr4_+_126846429_126846514	0.087725	NHLH1,2.p2	BC057615|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3	NM_198618|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3
mm9_v1_chr1_+_87804443_87804463	0.0876064	NHLH1,2.p2	AK190372|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr5_-_38108301_38108391	0.0873063	NHLH1,2.p2	BC052404|Stk32b|64293|serine/threonine kinase 32B	BC058412|Stk32b|64293|serine/threonine kinase 32B	BC056396|Stk32b|64293|serine/threonine kinase 32B	AK082468|Stk32b|64293|serine/threonine kinase 32B	NM_022416|Stk32b|64293|serine/threonine kinase 32B
mm9_v1_chr4_+_59594434_59594435	0.0869404	NHLH1,2.p2	NM_024255|Hsdl2|72479|hydroxysteroid dehydrogenase like 2
mm9_v1_chr4_-_129301106_129301154	0.0868262	NHLH1,2.p2	AK003287|Ccdc28b|66264|coiled coil domain containing 28B	AK028262|Ccdc28b|66264|coiled coil domain containing 28B	BC028873|Ccdc28b|66264|coiled coil domain containing 28B	NM_025455|Ccdc28b|66264|coiled coil domain containing 28B	AK158016|Ccdc28b|66264|coiled coil domain containing 28B
mm9_v1_chr17_-_46866101_46866121	0.0866757	NHLH1,2.p2	BC014283|Gnmt|14711|glycine N-methyltransferase	BC087960|Gnmt|14711|glycine N-methyltransferase	D89664|Gnmt|14711|glycine N-methyltransferase	NM_010321|Gnmt|14711|glycine N-methyltransferase
mm9_v1_chr1_+_193541845_193542002	0.0866575	NHLH1,2.p2	AK133814|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	NM_172266|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1
mm9_v1_chr19_-_4801605_4801652	0.0865278	NHLH1,2.p2	
mm9_v1_chr16_+_26581790_26581827	0.0864856	NHLH1,2.p2	NM_001159317|Il1rap|16180|interleukin 1 receptor accessory protein	NM_001159318|Il1rap|16180|interleukin 1 receptor accessory protein	NM_008364|Il1rap|16180|interleukin 1 receptor accessory protein	NM_134103|Il1rap|16180|interleukin 1 receptor accessory protein	AK083209|Il1rap|16180|interleukin 1 receptor accessory protein	AK034269|Il1rap|16180|interleukin 1 receptor accessory protein
mm9_v1_chr15_+_25870456_25870763	0.0864455	NHLH1,2.p2	AK167327|Fam134b|66270|family with sequence similarity 134, member B	AK146972|Fam134b|66270|family with sequence similarity 134, member B	BC019494|Fam134b|66270|family with sequence similarity 134, member B	NM_025459|Fam134b|66270|family with sequence similarity 134, member B	BC054415|Fam134b|66270|family with sequence similarity 134, member B
mm9_v1_chr14_-_8826695_8826718	0.0862098	NHLH1,2.p2	NM_007870|Dnase1l3|13421|deoxyribonuclease 1-like 3
mm9_v1_chr17_-_33855557_33855658	0.0860172	NHLH1,2.p2	BC002144|March2|224703|membrane-associated ring finger (C3HC4) 2	AK053434|March2|224703|membrane-associated ring finger (C3HC4) 2	AK079234|March2|224703|membrane-associated ring finger (C3HC4) 2	AK081495|March2|224703|membrane-associated ring finger (C3HC4) 2	AK036614|March2|224703|membrane-associated ring finger (C3HC4) 2	AK039778|March2|224703|membrane-associated ring finger (C3HC4) 2	AK040163|March2|224703|membrane-associated ring finger (C3HC4) 2	NM_145486|March2|224703|membrane-associated ring finger (C3HC4) 2
mm9_v1_chr1_-_174520562_174520698	0.0855281	NHLH1,2.p2	AB196828|Slamf8|74748|SLAM family member 8	AB196829|Slamf8|74748|SLAM family member 8	AB196830|Slamf8|74748|SLAM family member 8	AB196831|Slamf8|74748|SLAM family member 8	AK156077|Slamf8|74748|SLAM family member 8	AK017911|Slamf8|74748|SLAM family member 8	BC024587|Slamf8|74748|SLAM family member 8	AK142633|Slamf8|74748|SLAM family member 8	NM_029084|Slamf8|74748|SLAM family member 8
mm9_v1_chr15_-_98087709_98087737	0.0854455	NHLH1,2.p2	AB016273|H1fnt|70069|H1 histone family, member N, testis-specific	BC052363|H1fnt|70069|H1 histone family, member N, testis-specific	AY496853|H1fnt|70069|H1 histone family, member N, testis-specific	NM_027304|H1fnt|70069|H1 histone family, member N, testis-specific
mm9_v1_chr3_+_144233390_144233449	0.0854237	NHLH1,2.p2	NM_053102|Sep15|93684|selenoprotein	AF288740|Sep15|93684|selenoprotein
mm9_v1_chr13_+_23635920_23635920	0.084995	NHLH1,2.p2	BC101954|Hist1h3f|260423|histone cluster 1, H3f	BC101955|Hist1h3f|260423|histone cluster 1, H3f	BC101956|Hist1h3f|260423|histone cluster 1, H3f	BC103549|Hist1h3f|260423|histone cluster 1, H3f	NM_013548|Hist1h3f|260423|histone cluster 1, H3f
mm9_v1_chr10_+_36226612_36226726	0.0848127	NHLH1,2.p2	NM_001081208|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC147490|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC147493|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC150973|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC158004|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	AK086098|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5
mm9_v1_chr7_-_148599956_148600036	0.0847171	NHLH1,2.p2	AK084273|Pddc1|213350|Parkinson disease 7 domain containing 1	AK140975|Pddc1|213350|Parkinson disease 7 domain containing 1	AK150323|Pddc1|213350|Parkinson disease 7 domain containing 1	AK150354|Pddc1|213350|Parkinson disease 7 domain containing 1	AK151259|Pddc1|213350|Parkinson disease 7 domain containing 1	AK151794|Pddc1|213350|Parkinson disease 7 domain containing 1	AK151959|Pddc1|213350|Parkinson disease 7 domain containing 1	AK153110|Pddc1|213350|Parkinson disease 7 domain containing 1	AK081187|Pddc1|213350|Parkinson disease 7 domain containing 1	BC023835|Pddc1|213350|Parkinson disease 7 domain containing 1	AK161205|Pddc1|213350|Parkinson disease 7 domain containing 1	AK088159|Pddc1|213350|Parkinson disease 7 domain containing 1	NM_172116|Pddc1|213350|Parkinson disease 7 domain containing 1
mm9_v1_chr5_+_54389740_54389855	0.0846887	NHLH1,2.p2	AK173183|Stim2|116873|stromal interaction molecule 2	NM_001081103|Stim2|116873|stromal interaction molecule 2	AK080310|Stim2|116873|stromal interaction molecule 2	BC137881|Stim2|116873|stromal interaction molecule 2	BC145001|Stim2|116873|stromal interaction molecule 2
mm9_v1_chr6_+_88852457_88852516	0.0846613	NHLH1,2.p2	AK164913|Tpra1|24100|transmembrane protein, adipocyte asscociated 1
mm9_v1_chr5_+_7960430_7960493	0.0845614	NHLH1,2.p2	AK040760|Steap4|117167|STEAP family member 4	AJ319746|Steap4|117167|STEAP family member 4	BC006651|Steap4|117167|STEAP family member 4	NM_054098|Steap4|117167|STEAP family member 4	AY029778|Steap4|117167|STEAP family member 4
mm9_v1_chr8_-_73156354_73156457	0.0843824	NHLH1,2.p2	AK144199|Gdf15|23886|growth differentiation factor 15
mm9_v1_chr11_+_78075242_78075302	0.0842518	NHLH1,2.p2	AK150829|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	NM_001002004|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC080706|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	AK149719|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC075633|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC019798|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene
mm9_v1_chr16_-_92605804_92605880	0.084211	NHLH1,2.p2	AK153274|Runx1|12394|runt related transcription factor 1
mm9_v1_chr4_-_141402189_141402273	0.0841879	NHLH1,2.p2	AK007772|Ctrc|76701|chymotrypsin C (caldecrin)	BC103715|Ctrc|76701|chymotrypsin C (caldecrin)	BC115516|Ctrc|76701|chymotrypsin C (caldecrin)	BC115517|Ctrc|76701|chymotrypsin C (caldecrin)	NM_001033875|Ctrc|76701|chymotrypsin C (caldecrin)
mm9_v1_chr2_-_91489909_91489949	0.083938	NHLH1,2.p2	AK132515|Zfp408|381410|zinc finger protein 408	NM_001033451|Zfp408|381410|zinc finger protein 408
mm9_v1_chr17_-_23736453_23736453	0.0838764	NHLH1,2.p2	AK030240|Zfp13|22654|zinc finger protein 13	NM_011747|Zfp13|22654|zinc finger protein 13
mm9_v1_chr10_+_80289364_80289423	0.0833876	NHLH1,2.p2	NM_008753|Oaz1|18245|ornithine decarboxylase antizyme 1
mm9_v1_chr13_+_32893929_32893948	0.0827558	NHLH1,2.p2	AK041886|Wrnip1|78903|Werner helicase interacting protein 1
mm9_v1_chr1_+_182823238_182823249	0.0826726	NHLH1,2.p2	AK031621|Lefty2|320202|left-right determination factor 2	AK131960|Lefty2|320202|left-right determination factor 2	BC066224|Lefty2|320202|left-right determination factor 2	NM_177099|Lefty2|320202|left-right determination factor 2
mm9_v1_chr10_-_95026787_95026872	0.082619	NHLH1,2.p2	NM_027722|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4
mm9_v1_chr13_-_73465894_73465936	0.0825125	NHLH1,2.p2	AK147147|Ndufs6|407785|NADH dehydrogenase (ubiquinone) Fe-S protein 6	BC076501|Ndufs6|407785|NADH dehydrogenase (ubiquinone) Fe-S protein 6	BC059730|Ndufs6|407785|NADH dehydrogenase (ubiquinone) Fe-S protein 6	BC086933|Ndufs6|407785|NADH dehydrogenase (ubiquinone) Fe-S protein 6	NM_010888|Ndufs6|407785|NADH dehydrogenase (ubiquinone) Fe-S protein 6
mm9_v1_chr9_-_45763233_45763277	0.0823856	NHLH1,2.p2	AK155875|Sidt2|214597|SID1 transmembrane family, member 2	AK152371|Sidt2|214597|SID1 transmembrane family, member 2
mm9_v1_chr12_-_13255934_13256032	0.0821045	NHLH1,2.p2	BC008570|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK166146|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK028341|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK053259|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK160982|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	BC010624|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	NM_134040|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK153335|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK132157|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1
mm9_v1_chr14_+_21895346_21895378	0.0820641	NHLH1,2.p2	AK151863|Adk|11534|adenosine kinase
mm9_v1_chr19_-_9162377_9162448	0.0811162	NHLH1,2.p2	BC027518|Scgb1a1|22287|secretoglobin, family 1A, member 1 (uteroglobin)	AK145844|Scgb1a1|22287|secretoglobin, family 1A, member 1 (uteroglobin)	NM_011681|Scgb1a1|22287|secretoglobin, family 1A, member 1 (uteroglobin)
mm9_v1_chr7_+_48154647_48154658	0.0807899	NHLH1,2.p2	AB030198|Vstm2b|58188|V-set and transmembrane domain containing 2B	NM_021387|Vstm2b|58188|V-set and transmembrane domain containing 2B	AK013845|Vstm2b|58188|V-set and transmembrane domain containing 2B
mm9_v1_chr12_+_33639034_33639066	0.0807345	NHLH1,2.p2	NM_198710|Sypl|19027|synaptophysin-like protein
mm9_v1_chr5_-_89088843_89089007	0.0806035	NHLH1,2.p2	AK208573|Grsf1|231413|G-rich RNA sequence binding factor 1	AK211991|Grsf1|231413|G-rich RNA sequence binding factor 1
mm9_v1_chr17_-_27327042_27327306	0.0802687	NHLH1,2.p2	AK217086|Lemd2|224640|LEM domain containing 2	AK212367|Lemd2|224640|LEM domain containing 2
mm9_v1_chr16_+_95923988_95924060	0.0802586	NHLH1,2.p2	NM_011809|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK038348|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain
mm9_v1_chr5_-_135726771_135726916	0.0801828	NHLH1,2.p2	AF033585|Fzd9|14371|frizzled homolog 9 (Drosophila)	NM_010246|Fzd9|14371|frizzled homolog 9 (Drosophila)
mm9_v1_chr2_-_48804794_48804803	0.0801741	NHLH1,2.p2	AK145454|Orc4|26428|origin recognition complex, subunit 4
mm9_v1_chr8_+_55686133_55686133	0.0801369	NHLH1,2.p2	AF395083|Spata4|69281|spermatogenesis associated 4	AF530515|Spata4|69281|spermatogenesis associated 4	AK005612|Spata4|69281|spermatogenesis associated 4	BC048650|Spata4|69281|spermatogenesis associated 4	NM_133711|Spata4|69281|spermatogenesis associated 4
mm9_v1_chr9_+_72584532_72584702	0.079777	NHLH1,2.p2	BC007184|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4
mm9_v1_chr13_-_38694739_38694840	0.0795831	NHLH1,2.p2	
mm9_v1_chr9_+_46049140_46049166	0.079459	NHLH1,2.p2	AK168687|Apoa4|11808|apolipoprotein A-IV	AK004856|Apoa4|11808|apolipoprotein A-IV	AK161535|Apoa4|11808|apolipoprotein A-IV	M64248|Apoa4|11808|apolipoprotein A-IV	M64249|Apoa4|11808|apolipoprotein A-IV	M64250|Apoa4|11808|apolipoprotein A-IV	BC010769|Apoa4|11808|apolipoprotein A-IV	BC050149|Apoa4|11808|apolipoprotein A-IV
mm9_v1_chr15_-_76476688_76476767	0.0791983	NHLH1,2.p2	AK028994|Cyhr1|54151|cysteine and histidine rich 1
mm9_v1_chr14_+_21522300_21522310	0.0790825	NHLH1,2.p2	AK010311|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1
mm9_v1_chr2_-_130490351_130490380	0.0789077	NHLH1,2.p2	BC115616|Ddrgk1|77006|DDRGK domain containing 1	BC115617|Ddrgk1|77006|DDRGK domain containing 1	NM_029832|Ddrgk1|77006|DDRGK domain containing 1
mm9_v1_chr3_-_95110715_95110725	0.0786083	NHLH1,2.p2	BC062140|Anxa9|71790|annexin A9	AK003395|Anxa9|71790|annexin A9	NM_001085383|Anxa9|71790|annexin A9
mm9_v1_chr11_-_83388330_83388380	0.0781326	NHLH1,2.p2	AK151953|Ccl9|20308|chemokine (C-C motif) ligand 9
mm9_v1_chr14_-_56364421_56364522	0.0779731	NHLH1,2.p2	BC003930|Dhrs1|52585|dehydrogenase/reductase (SDR family) member 1	BC023825|Dhrs1|52585|dehydrogenase/reductase (SDR family) member 1	AK159964|Dhrs1|52585|dehydrogenase/reductase (SDR family) member 1	AK146317|Dhrs1|52585|dehydrogenase/reductase (SDR family) member 1	AK168147|Dhrs1|52585|dehydrogenase/reductase (SDR family) member 1	AK168115|Dhrs1|52585|dehydrogenase/reductase (SDR family) member 1	NM_026819|Dhrs1|52585|dehydrogenase/reductase (SDR family) member 1
mm9_v1_chr8_+_126868529_126868828	0.0779614	NHLH1,2.p2	BC025877|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	BC039641|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	AK200523|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
mm9_v1_chr19_-_58935417_58935456	0.0779569	NHLH1,2.p2	AB093239|Hspa12a|73442|heat shock protein 12A	BC030362|Hspa12a|73442|heat shock protein 12A	AK038491|Hspa12a|73442|heat shock protein 12A	AK006867|Hspa12a|73442|heat shock protein 12A
mm9_v1_chr5_+_67137106_67137134	0.0771488	NHLH1,2.p2	
mm9_v1_chr4_-_115817140_115817220	0.0771118	NHLH1,2.p2	BC147058|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	BC147059|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	BC147737|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	BC147750|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	AK013564|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	NM_026547|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene
mm9_v1_chr8_-_95753432_95753442	0.0770774	NHLH1,2.p2	BC019208|Ces1e|13897|carboxylesterase 1E	S80191|Ces1e|13897|carboxylesterase 1E
mm9_v1_chr5_+_140981515_140981584	0.0770282	NHLH1,2.p2	NM_021528|Chst12|59031|carbohydrate sulfotransferase 12	AK142155|Chst12|59031|carbohydrate sulfotransferase 12	BC003201|Chst12|59031|carbohydrate sulfotransferase 12
mm9_v1_chr14_+_33015323_33015405	0.0768435	NHLH1,2.p2	AF079557|Parg|26430|poly (ADP-ribose) glycohydrolase
mm9_v1_chr11_+_75323552_75323644	0.0767661	NHLH1,2.p2	NM_001029938|Rilp|280408|Rab interacting lysosomal protein	AK139016|Rilp|280408|Rab interacting lysosomal protein	BC116750|Rilp|280408|Rab interacting lysosomal protein	BC119166|Rilp|280408|Rab interacting lysosomal protein
mm9_v1_chr5_+_91215126_91215171	0.0767174	NHLH1,2.p2	AK144158|Cxcl3|330122|chemokine (C-X-C motif) ligand 3	AK150314|Cxcl3|330122|chemokine (C-X-C motif) ligand 3	AK154334|Cxcl3|330122|chemokine (C-X-C motif) ligand 3	AY311403|Cxcl3|330122|chemokine (C-X-C motif) ligand 3	NM_203320|Cxcl3|330122|chemokine (C-X-C motif) ligand 3	AK155702|Cxcl3|330122|chemokine (C-X-C motif) ligand 3	BC117014|Cxcl3|330122|chemokine (C-X-C motif) ligand 3	BC117016|Cxcl3|330122|chemokine (C-X-C motif) ligand 3
mm9_v1_chr15_-_76029835_76029835	0.0764583	NHLH1,2.p2	AF188021|Plec|18810|plectin	AY480041|Plec|18810|plectin	NM_201392|Plec|18810|plectin
mm9_v1_chr8_+_123640069_123640092	0.0759774	NHLH1,2.p2	AK076319|Foxc2|14234|forkhead box C2	AK146887|Foxc2|14234|forkhead box C2	NM_013519|Foxc2|14234|forkhead box C2	X74040|Foxc2|14234|forkhead box C2
mm9_v1_chr4_+_45861687_45861850	0.0757835	NHLH1,2.p2	AK045033|1300002K09Rik|74152|RIKEN cDNA 1300002K09 gene	NM_028788|1300002K09Rik|74152|RIKEN cDNA 1300002K09 gene	AK050152|1300002K09Rik|74152|RIKEN cDNA 1300002K09 gene	AK050348|1300002K09Rik|74152|RIKEN cDNA 1300002K09 gene	AK004855|1300002K09Rik|74152|RIKEN cDNA 1300002K09 gene
mm9_v1_chr4_+_83063621_83063661	0.0755599	NHLH1,2.p2	AK049933|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3	AK016168|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3	AK007563|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3	AK010932|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3	AK031870|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3	AK031924|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3	BC048713|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3	NM_029949|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3	AK019863|Snapc3|77634|small nuclear RNA activating complex, polypeptide 3
mm9_v1_chrX_+_65931956_65932015	0.0753265	NHLH1,2.p2	AF461114|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK205186|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK208300|Fmr1|14265|fragile X mental retardation syndrome 1 homolog
mm9_v1_chr2_-_56967331_56967448	0.0749785	NHLH1,2.p2	S53744|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2	AK158607|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2	NM_013613|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2
mm9_v1_chr10_-_77472453_77472498	0.0747496	NHLH1,2.p2	J03928|Pfkl|18641|phosphofructokinase, liver, B-type	AK036318|Pfkl|18641|phosphofructokinase, liver, B-type	BC052914|Pfkl|18641|phosphofructokinase, liver, B-type	AK159328|Pfkl|18641|phosphofructokinase, liver, B-type	BC020097|Pfkl|18641|phosphofructokinase, liver, B-type	BC029336|Pfkl|18641|phosphofructokinase, liver, B-type	AK081313|Pfkl|18641|phosphofructokinase, liver, B-type	AK030511|Pfkl|18641|phosphofructokinase, liver, B-type	AK008812|Pfkl|18641|phosphofructokinase, liver, B-type	AK168660|Pfkl|18641|phosphofructokinase, liver, B-type
mm9_v1_chr5_-_92511942_92511942	0.0747041	NHLH1,2.p2	AK149427|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080797|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr6_+_110595574_110595583	0.0746623	NHLH1,2.p2	AK053447|Grm7|108073|glutamate receptor, metabotropic 7	AK047160|Grm7|108073|glutamate receptor, metabotropic 7	AK047733|Grm7|108073|glutamate receptor, metabotropic 7
mm9_v1_chrX_+_71137440_71137452	0.0746101	NHLH1,2.p2	AJ310753|Avpr2|12000|arginine vasopressin receptor 2	NM_019404|Avpr2|12000|arginine vasopressin receptor 2	BC104728|Avpr2|12000|arginine vasopressin receptor 2	BC104729|Avpr2|12000|arginine vasopressin receptor 2	BC104731|Avpr2|12000|arginine vasopressin receptor 2	BC105662|Avpr2|12000|arginine vasopressin receptor 2	BC107005|Avpr2|12000|arginine vasopressin receptor 2
mm9_v1_chr1_+_133495690_133495690	0.0740628	NHLH1,2.p2	NM_011924|Avpr1b|26361|arginine vasopressin receptor 1B
mm9_v1_chr17_+_37006518_37006546	0.0739397	NHLH1,2.p2	NM_011280|Trim10|19824|tripartite motif-containing 10	AK011082|Trim10|19824|tripartite motif-containing 10	AF134811|Trim10|19824|tripartite motif-containing 10	BC051632|Trim10|19824|tripartite motif-containing 10	AF220121|Trim10|19824|tripartite motif-containing 10
mm9_v1_chr6_-_145198693_145198778	0.0737825	NHLH1,2.p2	BC119495|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	BC004642|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	BC010202|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	AK155064|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	AK164065|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	NM_021284|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
mm9_v1_chr7_+_51268047_51268089	0.0736804	NHLH1,2.p2	K01831|Klk1b26|16618|kallikrein 1-related petidase b26	NM_010644|Klk1b26|16618|kallikrein 1-related petidase b26	NM_010115|Egfbp2|13647|epidermal growth factor binding protein type B	BC138704|Klk1b26|16618|kallikrein 1-related petidase b26	X58628|Egfbp2|13647|epidermal growth factor binding protein type B	X63327|Klk1b26|16618|kallikrein 1-related petidase b26	BC024688|Klk1b26|16618|kallikrein 1-related petidase b26	AB016032|Egfbp2|13647|epidermal growth factor binding protein type B
mm9_v1_chr14_+_48092305_48092319	0.073449	NHLH1,2.p2	AK171630|Fbxo34|78938|F-box protein 34
mm9_v1_chr11_-_20232474_20232745	0.0733342	NHLH1,2.p2	AF246129|Slc1a4|55963|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	U75215|Slc1a4|55963|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	BC052733|Slc1a4|55963|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	BC043483|Slc1a4|55963|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	AK044280|Slc1a4|55963|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	AK136900|Slc1a4|55963|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	AK148075|Slc1a4|55963|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	AK139248|Slc1a4|55963|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	AK140866|Slc1a4|55963|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	NM_018861|Slc1a4|55963|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm9_v1_chr11_-_61059170_61059485	0.0729302	NHLH1,2.p2	AK198407|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK192800|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK198241|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2
mm9_v1_chr4_+_32887220_32887251	0.072835	NHLH1,2.p2	NM_175364|Lyrm2|108755|LYR motif containing 2	AK044791|Lyrm2|108755|LYR motif containing 2	BC028533|Lyrm2|108755|LYR motif containing 2
mm9_v1_chr4_+_14791353_14791554	0.0727609	NHLH1,2.p2	AK049213|Tmem55a|72519|transmembrane protein 55A	NM_028264|Tmem55a|72519|transmembrane protein 55A	AK033845|Tmem55a|72519|transmembrane protein 55A	AK012054|Tmem55a|72519|transmembrane protein 55A	AX775959|Tmem55a|72519|transmembrane protein 55A	BC021435|Tmem55a|72519|transmembrane protein 55A	AK206695|Tmem55a|72519|transmembrane protein 55A
mm9_v1_chr4_-_44096969_44097048	0.0726007	NHLH1,2.p2	AM697710|Gne|50798|glucosamine	BC015277|Gne|50798|glucosamine	BC051254|Gne|50798|glucosamine	AK136573|Gne|50798|glucosamine	NM_015828|Gne|50798|glucosamine
mm9_v1_chr14_-_34195326_34195332	0.072295	NHLH1,2.p2	AK047936|Mapk8|26419|mitogen-activated protein kinase 8	AK053062|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr16_-_15863310_15863463	0.0722718	NHLH1,2.p2	BC027550|Mzt2|72083|mitotic spindle organizing protein 2	AK010544|Mzt2|72083|mitotic spindle organizing protein 2	NM_029354|Mzt2|72083|mitotic spindle organizing protein 2	AK011255|Mzt2|72083|mitotic spindle organizing protein 2
mm9_v1_chr12_+_85626260_85626364	0.0720731	NHLH1,2.p2	NM_029880|Ptgr2|77219|prostaglandin reductase 2	BC021466|Ptgr2|77219|prostaglandin reductase 2	AK040396|Ptgr2|77219|prostaglandin reductase 2	AK020666|Ptgr2|77219|prostaglandin reductase 2	AK036168|Ptgr2|77219|prostaglandin reductase 2	AK041027|Ptgr2|77219|prostaglandin reductase 2	AK033693|Ptgr2|77219|prostaglandin reductase 2	AK159187|Ptgr2|77219|prostaglandin reductase 2	AK159932|Ptgr2|77219|prostaglandin reductase 2	AK021033|Ptgr2|77219|prostaglandin reductase 2	AK145232|Ptgr2|77219|prostaglandin reductase 2	AK168895|Ptgr2|77219|prostaglandin reductase 2	AK007522|Ptgr2|77219|prostaglandin reductase 2
mm9_v1_chr19_+_25311691_25311752	0.0718841	NHLH1,2.p2	AK041011|Kank1|107351|KN motif and ankyrin repeat domains 1	NM_181404|Kank1|107351|KN motif and ankyrin repeat domains 1
mm9_v1_chr5_+_135582754_135582797	0.0717689	NHLH1,2.p2	AK143999|Mlxipl|58805|MLX interacting protein-like	AK143800|Mlxipl|58805|MLX interacting protein-like	AF245475|Mlxipl|58805|MLX interacting protein-like	AF245476|Mlxipl|58805|MLX interacting protein-like	AF245477|Mlxipl|58805|MLX interacting protein-like	AF245478|Mlxipl|58805|MLX interacting protein-like	AF245479|Mlxipl|58805|MLX interacting protein-like	NM_021455|Mlxipl|58805|MLX interacting protein-like	AF156604|Mlxipl|58805|MLX interacting protein-like	BC064053|Mlxipl|58805|MLX interacting protein-like
mm9_v1_chr4_+_151648348_151648470	0.0716659	NHLH1,2.p2	NM_178406|Gpr153|100129|G protein-coupled receptor 153
mm9_v1_chr15_-_81021069_81021163	0.0715898	NHLH1,2.p2	AF532597|Mkl1|223701|MKL (megakaryoblastic leukemia)/myocardin-like 1	BC050941|Mkl1|223701|MKL (megakaryoblastic leukemia)/myocardin-like 1	BC054801|Mkl1|223701|MKL (megakaryoblastic leukemia)/myocardin-like 1	AK154561|Mkl1|223701|MKL (megakaryoblastic leukemia)/myocardin-like 1
mm9_v1_chr19_-_40686689_40686693	0.0713893	NHLH1,2.p2	AK015861|Tctn3|67590|tectonic family member 3	AK016982|Tctn3|67590|tectonic family member 3	AK030156|Tctn3|67590|tectonic family member 3
mm9_v1_chr5_-_31829101_31829134	0.0713223	NHLH1,2.p2	AK047063|Supt7l|72195|suppressor of Ty 7 (S. cerevisiae)-like	AK144989|Supt7l|72195|suppressor of Ty 7 (S. cerevisiae)-like	NM_028150|Supt7l|72195|suppressor of Ty 7 (S. cerevisiae)-like
mm9_v1_chr11_-_11937330_11937512	0.0712069	NHLH1,2.p2	AK030727|Grb10|14783|growth factor receptor bound protein 10	BC053842|Grb10|14783|growth factor receptor bound protein 10	AF022072|Grb10|14783|growth factor receptor bound protein 10	AK012646|Grb10|14783|growth factor receptor bound protein 10	AK163841|Grb10|14783|growth factor receptor bound protein 10	AK032927|Grb10|14783|growth factor receptor bound protein 10	NM_010345|Grb10|14783|growth factor receptor bound protein 10	FJ425892|Grb10|14783|growth factor receptor bound protein 10
mm9_v1_chr11_-_78020699_78020746	0.0711189	NHLH1,2.p2	
mm9_v1_chr2_+_119851954_119852060	0.0710341	NHLH1,2.p2	AK013436|Mapkbp1|26390|mitogen-activated protein kinase binding protein 1	BC039800|Mapkbp1|26390|mitogen-activated protein kinase binding protein 1	BC032269|Mapkbp1|26390|mitogen-activated protein kinase binding protein 1	BC054087|Mapkbp1|26390|mitogen-activated protein kinase binding protein 1
mm9_v1_chr17_-_27165478_27165573	0.0706058	NHLH1,2.p2	AK089220|Bak1|12018|BCL2-antagonist/killer 1	BC057589|Bak1|12018|BCL2-antagonist/killer 1	NM_007523|Bak1|12018|BCL2-antagonist/killer 1	Y13231|Bak1|12018|BCL2-antagonist/killer 1
mm9_v1_chr13_-_38620603_38620707	0.0705173	NHLH1,2.p2	AK136046|Txndc5|105245|thioredoxin domain containing 5	AK224956|Txndc5|105245|thioredoxin domain containing 5	AK225019|Txndc5|105245|thioredoxin domain containing 5
mm9_v1_chr11_+_101177524_101177765	0.0695629	NHLH1,2.p2	AK140597|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK150939|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK171348|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	NM_011192|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	BC015255|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK156079|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	BC139818|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	D87911|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK178475|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK179381|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK180194|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	CT010198|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	U60330|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3
mm9_v1_chr16_+_18876817_18876842	0.0695395	NHLH1,2.p2	NM_010435|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm9_v1_chr17_-_28495638_28495706	0.0694078	NHLH1,2.p2	AK164621|Tulp1|22157|tubby like protein 1
mm9_v1_chr7_-_117758395_117758412	0.0689353	NHLH1,2.p2	AK173257|Sbf2|319934|SET binding factor 2	AK048952|Sbf2|319934|SET binding factor 2	BC067204|Sbf2|319934|SET binding factor 2
mm9_v1_chr4_+_19935389_19935537	0.0689032	NHLH1,2.p2	BC026882|Ttpa|50500|tocopherol (alpha) transfer protein
mm9_v1_chr17_-_34161584_34161626	0.0688367	NHLH1,2.p2	AK154962|Ring1|19763|ring finger protein 1	BC009070|Ring1|19763|ring finger protein 1	AK155509|Ring1|19763|ring finger protein 1	NM_009066|Ring1|19763|ring finger protein 1
mm9_v1_chr13_-_115892027_115892148	0.0687338	NHLH1,2.p2	BC014765|Itga1|109700|integrin alpha 1	AK169964|Itga1|109700|integrin alpha 1	AK029105|Itga1|109700|integrin alpha 1	AK043769|Itga1|109700|integrin alpha 1	AK077286|Pelo|105083|pelota homolog (Drosophila)	AK141204|Itga1|109700|integrin alpha 1
mm9_v1_chr7_+_148650058_148650075	0.068687	NHLH1,2.p2	BC026645|Efcab4a|213573|EF-hand calcium binding domain 4A
mm9_v1_chr11_-_78959969_78959986	0.0683627	NHLH1,2.p2	AK164833|Ksr1|16706|kinase suppressor of ras 1
mm9_v1_chr1_+_189821727_189821874	0.0683375	NHLH1,2.p2	BC082324|Esrrg|26381|estrogen-related receptor gamma	NM_011935|Esrrg|26381|estrogen-related receptor gamma	AB093266|Esrrg|26381|estrogen-related receptor gamma	AF117254|Esrrg|26381|estrogen-related receptor gamma	AB221580|Esrrg|26381|estrogen-related receptor gamma
mm9_v1_chr11_-_68740550_68740582	0.0680868	NHLH1,2.p2	AB074438|Odf4|252868|outer dense fiber of sperm tails 4	BC060992|Odf4|252868|outer dense fiber of sperm tails 4	NM_145746|Odf4|252868|outer dense fiber of sperm tails 4
mm9_v1_chr10_-_5913894_5914027	0.0678007	NHLH1,2.p2	BC138908|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	BC145732|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	AK038060|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	BC002139|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	NM_024261|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	BC099894|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene
mm9_v1_chr3_+_88940542_88940546	0.067433	NHLH1,2.p2	AK149508|Pklr|18770|pyruvate kinase liver and red blood cell	NM_001099779|Pklr|18770|pyruvate kinase liver and red blood cell	AK149524|Pklr|18770|pyruvate kinase liver and red blood cell
mm9_v1_chr4_-_148500769_148500849	0.0672752	NHLH1,2.p2	AF013253|Cort|12854|cortistatin	AK013496|Cort|12854|cortistatin	NM_007745|Cort|12854|cortistatin
mm9_v1_chr11_-_70468130_70468151	0.0671654	NHLH1,2.p2	AK011066|Pfn1|18643|profilin 1	AK152491|Pfn1|18643|profilin 1	AK160191|Pfn1|18643|profilin 1	NM_011072|Pfn1|18643|profilin 1
mm9_v1_chr4_+_3866023_3866087	0.0671329	NHLH1,2.p2	AK003308|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	NM_001190323|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	NM_001190324|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	AK007844|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	AK145105|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	AK168647|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	AK169018|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	NM_001190322|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	NM_181391|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	AK013200|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	BC030366|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7
mm9_v1_chr9_+_51856364_51856507	0.0669122	NHLH1,2.p2	BC053417|Rdx|19684|radixin	BC026786|Rdx|19684|radixin	AK016711|Rdx|19684|radixin	AK168449|Rdx|19684|radixin	AK146423|Rdx|19684|radixin	BC002041|Rdx|19684|radixin	X60672|Rdx|19684|radixin
mm9_v1_chr2_+_164115003_164115018	0.0665952	NHLH1,2.p2	BC131996|Svs3a|64335|seminal vesicle secretory protein 3A	BC131998|Svs3a|64335|seminal vesicle secretory protein 3A	NM_021363|Svs3a|64335|seminal vesicle secretory protein 3A	AK020575|Svs3a|64335|seminal vesicle secretory protein 3A	AF242220|Svs3a|64335|seminal vesicle secretory protein 3A
mm9_v1_chr1_-_173275736_173275801	0.0663594	NHLH1,2.p2	AK004988|Nit1|27045|nitrilase 1	BC021634|Nit1|27045|nitrilase 1	AF069988|Nit1|27045|nitrilase 1	AK002269|Nit1|27045|nitrilase 1	AK032189|Nit1|27045|nitrilase 1	NM_012049|Nit1|27045|nitrilase 1
mm9_v1_chr2_+_32390780_32390878	0.0662663	NHLH1,2.p2	AK131145|Fam102a|98952|family with sequence similarity 102, member A	AK170536|Fam102a|98952|family with sequence similarity 102, member A	AK049032|Fam102a|98952|family with sequence similarity 102, member A	NM_153560|Fam102a|98952|family with sequence similarity 102, member A
mm9_v1_chr7_+_128084130_128084187	0.0661022	NHLH1,2.p2	AK002918|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr9_+_21639937_21640039	0.0659613	NHLH1,2.p2	NM_001080940|Gm6484|624219|predicted gene 6484	BC051501|Gm6484|624219|predicted gene 6484	BC024408|Gm6484|624219|predicted gene 6484	BC038127|Gm6484|624219|predicted gene 6484
mm9_v1_chr2_-_32567786_32567820	0.0658915	NHLH1,2.p2	AK089276|Cdk9|107951|cyclin-dependent kinase 9 (CDC2-related kinase)
mm9_v1_chr10_+_84380371_84380454	0.0658741	NHLH1,2.p2	AY940666|Ric8b|237422|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)	AY940667|Ric8b|237422|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)	NM_001013441|Ric8b|237422|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)	AK132369|Ric8b|237422|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)
mm9_v1_chr2_-_172765592_172765841	0.0653512	NHLH1,2.p2	AK020411|Bmp7|12162|bone morphogenetic protein 7	X56906|Bmp7|12162|bone morphogenetic protein 7	BC010771|Bmp7|12162|bone morphogenetic protein 7	NM_007557|Bmp7|12162|bone morphogenetic protein 7
mm9_v1_chr11_+_58731409_58731558	0.065189	NHLH1,2.p2	AK143638|Butr1|192194|butyrophilin related 1	AK029784|Butr1|192194|butyrophilin related 1	AF269232|Butr1|192194|butyrophilin related 1	NM_138678|Butr1|192194|butyrophilin related 1
mm9_v1_chr11_+_84984593_84984597	0.0648705	NHLH1,2.p2	BC048674|1700125H20Rik|73634|RIKEN cDNA 1700125H20 gene	NM_028589|1700125H20Rik|73634|RIKEN cDNA 1700125H20 gene
mm9_v1_chr6_+_99642672_99642672	0.0645658	NHLH1,2.p2	NM_008158|Gpr27|14761|G protein-coupled receptor 27
mm9_v1_chr1_+_136312291_136312502	0.0644175	NHLH1,2.p2	AK143680|Adipor1|72674|adiponectin receptor 1	AK181422|Adipor1|72674|adiponectin receptor 1
mm9_v1_chr15_-_77137425_77137482	0.0641	NHLH1,2.p2	AK139555|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110827|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_053104|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_175387|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr7_-_31397445_31397492	0.0637064	NHLH1,2.p2	AF262335|Upk1a|109637|uroplakin 1A	AK004014|Upk1a|109637|uroplakin 1A	NM_026815|Upk1a|109637|uroplakin 1A
mm9_v1_chr9_+_108998083_108998108	0.0633238	NHLH1,2.p2	AB072381|Plxnb1|235611|plexin B1
mm9_v1_chr2_+_158492854_158492905	0.0631113	NHLH1,2.p2	AK044453|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	NM_001159662|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC054764|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC057542|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AF423761|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AK042123|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm9_v1_chr3_-_98663713_98663719	0.0629644	NHLH1,2.p2	AK146665|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	AK147114|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	NM_008293|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1
mm9_v1_chr7_-_107756791_107756814	0.0628094	NHLH1,2.p2	AK007653|Mrpl48|52443|mitochondrial ribosomal protein L48
mm9_v1_chr15_-_27955602_27955621	0.0622051	NHLH1,2.p2	NM_001081302|Trio|223435|triple functional domain (PTPRF interacting)
mm9_v1_chr12_+_72075637_72075733	0.062113	NHLH1,2.p2	AK165424|Psma3|19167|proteasome (prosome, macropain) subunit, alpha type 3	AK002877|Psma3|19167|proteasome (prosome, macropain) subunit, alpha type 3	AF055983|Psma3|19167|proteasome (prosome, macropain) subunit, alpha type 3	AK168495|Psma3|19167|proteasome (prosome, macropain) subunit, alpha type 3	AK169577|Psma3|19167|proteasome (prosome, macropain) subunit, alpha type 3	BC091743|Psma3|19167|proteasome (prosome, macropain) subunit, alpha type 3	AF060089|Psma3|19167|proteasome (prosome, macropain) subunit, alpha type 3
mm9_v1_chr14_+_48268985_48269068	0.062069	NHLH1,2.p2	AK040200|Ktn1|16709|kinectin 1	BC066871|Ktn1|16709|kinectin 1	BC075697|Ktn1|16709|kinectin 1
mm9_v1_chr7_+_127778702_127778797	0.0619269	NHLH1,2.p2	NM_025899|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK005151|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK003975|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK004492|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	BC003423|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK088103|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK167377|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK077583|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK075856|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2
mm9_v1_chr7_-_108709378_108709380	0.0618925	NHLH1,2.p2	AK018555|Art2a-ps|11871|ADP-ribosyltransferase 2a, pseudogene
mm9_v1_chr7_-_56136965_56137089	0.0618592	NHLH1,2.p2	AY957576|E2f8|108961|E2F transcription factor 8
mm9_v1_chr2_-_73052484_73052503	0.0617446	NHLH1,2.p2	AK013055|Ola1|67059|Obg-like ATPase 1	NM_025942|Ola1|67059|Obg-like ATPase 1	NM_030091|Ola1|67059|Obg-like ATPase 1
mm9_v1_chr15_-_77241411_77241499	0.0611999	NHLH1,2.p2	BC020489|Apol9a|223672|apolipoprotein L 9a	NM_173786|Apol9a|223672|apolipoprotein L 9a
mm9_v1_chr5_-_31504605_31504675	0.0608601	NHLH1,2.p2	BC058976|Zfp513|101023|zinc finger protein 513	NM_175311|Zfp513|101023|zinc finger protein 513
mm9_v1_chr6_+_87378995_87379026	0.0607221	NHLH1,2.p2	BC145044|Bmp10|12154|bone morphogenetic protein 10	BC145983|Bmp10|12154|bone morphogenetic protein 10	NM_009756|Bmp10|12154|bone morphogenetic protein 10	AF101033|Bmp10|12154|bone morphogenetic protein 10
mm9_v1_chr15_-_34608600_34608626	0.0603026	NHLH1,2.p2	AK038556|Nipal2|223473|NIPA-like domain containing 2	BC058207|Nipal2|223473|NIPA-like domain containing 2
mm9_v1_chr12_+_85981968_85981968	0.0601967	NHLH1,2.p2	NM_001168589|Vrtn|432677|vertebrae development homolog (pig)
mm9_v1_chr18_+_78012690_78012763	0.0597717	NHLH1,2.p2	AK169142|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK166812|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK152054|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK160043|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK098155|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK151128|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK168198|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK151224|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK151920|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK153167|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK169308|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	BC055892|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK146797|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK150426|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK152890|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK164110|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK166709|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK169080|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK169084|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK043976|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK076572|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK151004|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK159491|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK167159|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK168369|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK168879|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK168890|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK168932|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK169105|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK169300|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK150843|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK153282|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK159540|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK159758|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK168617|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK169414|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	BC014854|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	BC020417|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	L01062|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK167863|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1
mm9_v1_chr7_-_26175113_26175168	0.0595405	NHLH1,2.p2	BC021642|Lipe|16890|lipase, hormone sensitive	AK169858|Lipe|16890|lipase, hormone sensitive	NM_001039507|Lipe|16890|lipase, hormone sensitive
mm9_v1_chr1_+_174405490_174405627	0.0594837	NHLH1,2.p2	NM_029612|Slamf9|98365|SLAM family member 9	AK090041|Slamf9|98365|SLAM family member 9	AK009505|Slamf9|98365|SLAM family member 9	BC019477|Slamf9|98365|SLAM family member 9	AB196824|Slamf9|98365|SLAM family member 9	AB196825|Slamf9|98365|SLAM family member 9	AB196826|Slamf9|98365|SLAM family member 9	AB196827|Slamf9|98365|SLAM family member 9
mm9_v1_chr4_-_134409254_134409295	0.0593768	NHLH1,2.p2	AY846873|Tmem57|66146|transmembrane protein 57	AY846874|Tmem57|66146|transmembrane protein 57	NM_025382|Tmem57|66146|transmembrane protein 57
mm9_v1_chr15_+_82000246_82000509	0.0588733	NHLH1,2.p2	BC023333|Srebf2|20788|sterol regulatory element binding factor 2
mm9_v1_chr14_+_58445044_58445266	0.0586486	NHLH1,2.p2	AK010282|Mrp63|67840|mitochondrial ribosomal protein 63	AK011558|Mrp63|67840|mitochondrial ribosomal protein 63	NM_026401|Mrp63|67840|mitochondrial ribosomal protein 63	AK003130|Mrp63|67840|mitochondrial ribosomal protein 63	AB049958|Mrp63|67840|mitochondrial ribosomal protein 63	BC055723|Mrp63|67840|mitochondrial ribosomal protein 63	BC049555|Mrp63|67840|mitochondrial ribosomal protein 63
mm9_v1_chr11_-_113612629_113612637	0.0585464	NHLH1,2.p2	AB035088|Cdc42ep4|56699|CDC42 effector protein (Rho GTPase binding) 4
mm9_v1_chr2_+_152695336_152695453	0.0584524	NHLH1,2.p2	AK167030|Tpx2|72119|TPX2, microtubule-associated protein homolog (Xenopus laevis)	AK011311|Tpx2|72119|TPX2, microtubule-associated protein homolog (Xenopus laevis)
mm9_v1_chr6_+_137683745_137683761	0.0584278	NHLH1,2.p2	AK152283|Strap|20901|serine/threonine kinase receptor associated protein
mm9_v1_chr7_+_4877386_4877447	0.058292	NHLH1,2.p2	AK165666|A430110N23Rik|269855|RIKEN cDNA A430110N23 gene	AK079906|A430110N23Rik|269855|RIKEN cDNA A430110N23 gene	EU850434|A430110N23Rik|269855|RIKEN cDNA A430110N23 gene	NM_173008|A430110N23Rik|269855|RIKEN cDNA A430110N23 gene	BC141044|A430110N23Rik|269855|RIKEN cDNA A430110N23 gene
mm9_v1_chr18_-_37798218_37798376	0.0582049	NHLH1,2.p2	BC114348|Slc25a2|83885|solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	BC125010|Slc25a2|83885|solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	AF332006|Slc25a2|83885|solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	AY583456|Slc25a2|83885|solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	AK077159|Slc25a2|83885|solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	NM_001159275|Slc25a2|83885|solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2
mm9_v1_chr14_+_28242002_28242052	0.0581278	NHLH1,2.p2	AK016751|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	AK044563|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	NM_001114879|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	NM_028945|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed
mm9_v1_chr4_-_148800634_148800700	0.0579202	NHLH1,2.p2	BC075620|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm9_v1_chr8_+_91115856_91115922	0.0579123	NHLH1,2.p2	AK192443|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AK193874|Nkd1|93960|naked cuticle 1 homolog (Drosophila)
mm9_v1_chrX_-_92391841_92391855	0.0578948	NHLH1,2.p2	AK163874|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9
mm9_v1_chr7_-_129235182_129235275	0.0578538	NHLH1,2.p2	AK003696|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1
mm9_v1_chr2_+_38863553_38863815	0.0576394	NHLH1,2.p2	BC024482|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	AK008255|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	NM_028809|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	AK181564|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like
mm9_v1_chr9_+_85642584_85642686	0.0576084	NHLH1,2.p2	AK017009|4933431K14Rik|71295|RIKEN cDNA 4933431K14 gene
mm9_v1_chr14_-_21167291_21167342	0.0575274	NHLH1,2.p2	BC013470|Ecd|70601|ecdysoneless homolog (Drosophila)	AK028664|Ecd|70601|ecdysoneless homolog (Drosophila)	NM_027475|Ecd|70601|ecdysoneless homolog (Drosophila)
mm9_v1_chr1_+_180459245_180459259	0.0575195	NHLH1,2.p2	AB355846|Kif26b|269152|kinesin family member 26B	AK052046|Kif26b|269152|kinesin family member 26B	NM_001161665|Kif26b|269152|kinesin family member 26B
mm9_v1_chr8_+_80073336_80073360	0.0575163	NHLH1,2.p2	AK161023|Prmt10|102182|protein arginine methyltransferase 10 (putative)	AK154546|Prmt10|102182|protein arginine methyltransferase 10 (putative)
mm9_v1_chr13_-_54788995_54789018	0.0572757	NHLH1,2.p2	AK160090|Rnf44|105239|ring finger protein 44	AK160115|Rnf44|105239|ring finger protein 44
mm9_v1_chr17_-_24306262_24306418	0.0570902	NHLH1,2.p2	BC132267|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	BC132611|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	BC126881|Atp6v0c-ps2|100039636|ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2	BC099475|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	BC050939|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	AK146159|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	AK170346|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	BC083129|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	AK002871|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	AK028239|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	M64298|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	NM_009729|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	AK002570|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C	AK014361|Atp6v0c|11984|ATPase, H+ transporting, lysosomal V0 subunit C
mm9_v1_chr11_-_120685860_120685860	0.0570427	NHLH1,2.p2	NM_007988|Fasn|14104|fatty acid synthase
mm9_v1_chr2_+_22924699_22924786	0.0567903	NHLH1,2.p2	BC084584|Acbd5|74159|acyl-Coenzyme A binding domain containing 5
mm9_v1_chr4_-_128295698_128295862	0.0566352	NHLH1,2.p2	AY531552|Tlr12|384059|toll-like receptor 12	BC131921|Tlr12|384059|toll-like receptor 12	AY510705|Tlr12|384059|toll-like receptor 12	AK137624|Tlr12|384059|toll-like receptor 12	NM_205823|Tlr12|384059|toll-like receptor 12
mm9_v1_chr16_-_18407565_18407802	0.0566175	NHLH1,2.p2	AK084547|Comt|12846|catechol-O-methyltransferase	AK133500|Comt|12846|catechol-O-methyltransferase
mm9_v1_chr14_+_30806158_30806226	0.0564868	NHLH1,2.p2	AK179069|Actr8|56249|ARP8 actin-related protein 8 homolog (S. cerevisiae)
mm9_v1_chr11_+_106078232_106078424	0.0563735	NHLH1,2.p2	AK049311|Ddx42|72047|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	NM_028074|Ddx42|72047|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	AK169816|Ddx42|72047|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	AK021013|Ddx42|72047|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	AK171730|Ddx42|72047|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	AK134182|Ddx42|72047|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
mm9_v1_chr17_+_34442808_34442831	0.0563601	NHLH1,2.p2	NM_010382|H2-Eb1|14969|histocompatibility 2, class II antigen E beta
mm9_v1_chr12_-_15822792_15822800	0.05626	NHLH1,2.p2	AK080064|Trib2|217410|tribbles homolog 2 (Drosophila)	AK082329|Trib2|217410|tribbles homolog 2 (Drosophila)
mm9_v1_chr17_+_25033425_25033488	0.0561179	NHLH1,2.p2	AK007399|Nme3|79059|non-metastatic cells 3, protein expressed in	NM_019730|Nme3|79059|non-metastatic cells 3, protein expressed in	AF153449|Nme3|79059|non-metastatic cells 3, protein expressed in	AF288689|Nme3|79059|non-metastatic cells 3, protein expressed in	BC028503|Nme3|79059|non-metastatic cells 3, protein expressed in	AK002525|Nme3|79059|non-metastatic cells 3, protein expressed in
mm9_v1_chrX_-_99447107_99447107	0.0559018	NHLH1,2.p2	BC052030|Cited1|12705|Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	NM_007709|Cited1|12705|Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1
mm9_v1_chr16_+_13671936_13672057	0.0558571	NHLH1,2.p2	NM_001177552|Bfar|67118|bifunctional apoptosis regulator	NM_025976|Bfar|67118|bifunctional apoptosis regulator	AK013950|3110001I22Rik|66598|RIKEN cDNA 3110001I22 gene	AK041839|Bfar|67118|bifunctional apoptosis regulator
mm9_v1_chr4_+_19935558_19935623	0.0556614	NHLH1,2.p2	AK050374|Ttpa|50500|tocopherol (alpha) transfer protein	BC099869|Ttpa|50500|tocopherol (alpha) transfer protein	BC099870|Ttpa|50500|tocopherol (alpha) transfer protein	BC099871|Ttpa|50500|tocopherol (alpha) transfer protein	NM_015767|Ttpa|50500|tocopherol (alpha) transfer protein	BC099868|Ttpa|50500|tocopherol (alpha) transfer protein	AF218416|Ttpa|50500|tocopherol (alpha) transfer protein	AK004882|Ttpa|50500|tocopherol (alpha) transfer protein
mm9_v1_chr2_-_113839354_113839354	0.0552576	NHLH1,2.p2	BC058595|Gjd2|14617|gap junction protein, delta 2	NM_010290|Gjd2|14617|gap junction protein, delta 2
mm9_v1_chr7_+_37483196_37483263	0.0551376	NHLH1,2.p2	BC150674|Tshz3|243931|teashirt zinc finger family member 3	AK220396|Tshz3|243931|teashirt zinc finger family member 3
mm9_v1_chr7_+_135667279_135667363	0.0546699	NHLH1,2.p2	AK007414|Bag3|29810|BCL2-associated athanogene 3	AK036675|Bag3|29810|BCL2-associated athanogene 3	AK016510|Bag3|29810|BCL2-associated athanogene 3	AF130471|Bag3|29810|BCL2-associated athanogene 3
mm9_v1_chr5_+_101227737_101227799	0.0545741	NHLH1,2.p2	AK145935|Mrps18c|68735|mitochondrial ribosomal protein S18C	AK004139|Mrps18c|68735|mitochondrial ribosomal protein S18C	AK088290|Mrps18c|68735|mitochondrial ribosomal protein S18C	BC028442|Mrps18c|68735|mitochondrial ribosomal protein S18C	NM_026826|Mrps18c|68735|mitochondrial ribosomal protein S18C
mm9_v1_chr2_-_89892475_89892478	0.0536324	NHLH1,2.p2	BC111111|Olfr140|57272|olfactory receptor 140	BC141888|Olfr140|57272|olfactory receptor 140	NM_020515|Olfr140|57272|olfactory receptor 140
mm9_v1_chr7_+_36119255_36119332	0.0536271	NHLH1,2.p2	NM_027897|Rhpn2|52428|rhophilin, Rho GTPase binding protein 2	AK004849|Rhpn2|52428|rhophilin, Rho GTPase binding protein 2
mm9_v1_chr5_-_40035831_40035890	0.0536113	NHLH1,2.p2	BC009133|Hs3st1|15476|heparan sulfate (glucosamine) 3-O-sulfotransferase 1	AK087753|Hs3st1|15476|heparan sulfate (glucosamine) 3-O-sulfotransferase 1	NM_010474|Hs3st1|15476|heparan sulfate (glucosamine) 3-O-sulfotransferase 1
mm9_v1_chr5_+_124380677_124380719	0.0530398	NHLH1,2.p2	NM_001134767|Ccdc62|208908|coiled-coil domain containing 62
mm9_v1_chr5_+_135644245_135644412	0.0527274	NHLH1,2.p2	AK160439|Bcl7b|12054|B-cell CLL/lymphoma 7B	AK131643|Bcl7b|12054|B-cell CLL/lymphoma 7B	AK155076|Bcl7b|12054|B-cell CLL/lymphoma 7B	AJ011145|Bcl7b|12054|B-cell CLL/lymphoma 7B	AK186334|Bcl7b|12054|B-cell CLL/lymphoma 7B
mm9_v1_chr15_+_77559490_77559620	0.0522724	NHLH1,2.p2	AK050167|Apol9b|71898|apolipoprotein L 9b	NM_173743|Apol9b|71898|apolipoprotein L 9b	AK009386|Apol9b|71898|apolipoprotein L 9b	NM_001168660|Apol9b|71898|apolipoprotein L 9b
mm9_v1_chr11_+_75323840_75323968	0.0521456	NHLH1,2.p2	AK160517|Rilp|280408|Rab interacting lysosomal protein
mm9_v1_chr16_-_38341927_38341945	0.0520892	NHLH1,2.p2	AK077038|4932425I24Rik|320214|RIKEN cDNA 4932425I24 gene	NM_001081025|4932425I24Rik|320214|RIKEN cDNA 4932425I24 gene
mm9_v1_chr8_+_116167112_116167131	0.0520619	NHLH1,2.p2	AY899935|Syce1l|668110|synaptonemal complex central element protein 1 like	AY899936|Syce1l|668110|synaptonemal complex central element protein 1 like	BC141326|Syce1l|668110|synaptonemal complex central element protein 1 like	BC141347|Syce1l|668110|synaptonemal complex central element protein 1 like	NM_001048145|Syce1l|668110|synaptonemal complex central element protein 1 like	NM_029139|Syce1l|668110|synaptonemal complex central element protein 1 like	AK015606|Syce1l|668110|synaptonemal complex central element protein 1 like	BC100478|Syce1l|668110|synaptonemal complex central element protein 1 like
mm9_v1_chr15_+_32174546_32174624	0.0520042	NHLH1,2.p2	AK143026|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK045236|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	NM_009154|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK031231|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK054256|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK165206|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK039101|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK157706|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK141612|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
mm9_v1_chr2_+_163332550_163332692	0.0519172	NHLH1,2.p2	AF015275|Hnf4a|15378|hepatic nuclear factor 4, alpha	FJ608819|Hnf4a|15378|hepatic nuclear factor 4, alpha	FJ608820|Hnf4a|15378|hepatic nuclear factor 4, alpha	FJ608821|Hnf4a|15378|hepatic nuclear factor 4, alpha	EF193391|Hnf4a|15378|hepatic nuclear factor 4, alpha
mm9_v1_chr4_-_129167980_129168013	0.0518966	NHLH1,2.p2	AF201734|Tssk3|58864|testis-specific serine kinase 3	AF298901|Tssk3|58864|testis-specific serine kinase 3	AK005983|Tssk3|58864|testis-specific serine kinase 3	BC048470|Tssk3|58864|testis-specific serine kinase 3	AK019840|Tssk3|58864|testis-specific serine kinase 3	NM_080442|Tssk3|58864|testis-specific serine kinase 3
mm9_v1_chr12_-_106923394_106923487	0.0516107	NHLH1,2.p2	AK085790|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	AK083213|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	BC062182|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	AK086802|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	NM_029654|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)
mm9_v1_chr6_-_99676346_99676385	0.0516093	NHLH1,2.p2	AK015462|Prok2|50501|prokineticin 2	BC116911|Prok2|50501|prokineticin 2	BC144863|Prok2|50501|prokineticin 2	AF487280|Prok2|50501|prokineticin 2	AF182064|Prok2|50501|prokineticin 2	AF182065|Prok2|50501|prokineticin 2	AF182066|Prok2|50501|prokineticin 2	NM_001037539|Prok2|50501|prokineticin 2	NM_001170419|Prok2|50501|prokineticin 2	NM_015768|Prok2|50501|prokineticin 2
mm9_v1_chr5_-_140289167_140289196	0.0513605	NHLH1,2.p2	AK148454|Tmem184a|231832|transmembrane protein 184a	NM_144914|Tmem184a|231832|transmembrane protein 184a
mm9_v1_chr5_-_90652986_90653036	0.0510649	NHLH1,2.p2	AK156053|Cox18|231430|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)	BC138972|Cox18|231430|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)	BC145479|Cox18|231430|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)	BC145486|Cox18|231430|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)	BC145728|Cox18|231430|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)	NM_001033310|Cox18|231430|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)	NM_001163456|Cox18|231430|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)
mm9_v1_chr17_-_36046961_36047023	0.0506569	NHLH1,2.p2	AK049682|Atat1|73242|alpha tubulin acetyltransferase 1	AK014265|Atat1|73242|alpha tubulin acetyltransferase 1	AK011750|Atat1|73242|alpha tubulin acetyltransferase 1	AK034725|Atat1|73242|alpha tubulin acetyltransferase 1	AK133694|Atat1|73242|alpha tubulin acetyltransferase 1	BC030669|Atat1|73242|alpha tubulin acetyltransferase 1	AK011350|Atat1|73242|alpha tubulin acetyltransferase 1	BC028847|Atat1|73242|alpha tubulin acetyltransferase 1	AK011838|Atat1|73242|alpha tubulin acetyltransferase 1	AK028297|Atat1|73242|alpha tubulin acetyltransferase 1	NM_001142744|Atat1|73242|alpha tubulin acetyltransferase 1	NM_001142745|Atat1|73242|alpha tubulin acetyltransferase 1	NM_028476|Atat1|73242|alpha tubulin acetyltransferase 1
mm9_v1_chr11_+_115891591_115891668	0.0504725	NHLH1,2.p2	AK077635|Unk|217331|unkempt homolog (Drosophila)	AK046395|Unk|217331|unkempt homolog (Drosophila)	NM_172569|Unk|217331|unkempt homolog (Drosophila)	AK078095|Unk|217331|unkempt homolog (Drosophila)	AK129438|Unk|217331|unkempt homolog (Drosophila)
mm9_v1_chr16_+_93683426_93683502	0.0504692	NHLH1,2.p2	AK003232|Cbr3|109857|carbonyl reductase 3	BC028763|Cbr3|109857|carbonyl reductase 3	NM_173047|Cbr3|109857|carbonyl reductase 3	AK028150|Cbr3|109857|carbonyl reductase 3	BC096658|Cbr3|109857|carbonyl reductase 3	BC087735|Cbr3|109857|carbonyl reductase 3
mm9_v1_chr7_-_16844686_16844730	0.0503463	NHLH1,2.p2	BC125641|C5ar1|12273|complement component 5a receptor 1	BC125643|C5ar1|12273|complement component 5a receptor 1	NM_001173550|C5ar1|12273|complement component 5a receptor 1
mm9_v1_chr10_-_78054639_78054708	0.0503188	NHLH1,2.p2	AK004654|Syde1|71709|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	NM_027875|Syde1|71709|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
mm9_v1_chr7_-_36539369_36539472	0.0500426	NHLH1,2.p2	BC059897|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK045758|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031722|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	BC050065|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK033395|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AF538322|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031345|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK034217|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	NM_178704|Dpy19l3|233115|dpy-19-like 3 (C. elegans)
mm9_v1_chr9_+_108816949_108816949	0.0500208	NHLH1,2.p2	AK006292|Tmem89|69384|transmembrane protein 89	BC111913|Tmem89|69384|transmembrane protein 89	NM_027066|Tmem89|69384|transmembrane protein 89
mm9_v1_chr18_-_40378992_40378996	0.0500039	NHLH1,2.p2	BC055301|Yipf5|67180|Yip1 domain family, member 5
mm9_v1_chr10_-_112363848_112364044	0.0498768	NHLH1,2.p2	AK078766|Atxn7l3b|382423|ataxin 7-like 3B	AK051537|Atxn7l3b|382423|ataxin 7-like 3B
mm9_v1_chr10_-_80139032_80139051	0.0498489	NHLH1,2.p2	AK154235|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2
mm9_v1_chr19_+_7016333_7016409	0.049842	NHLH1,2.p2	NM_007522|Bad|12015|BCL2-associated agonist of cell death	L37296|Bad|12015|BCL2-associated agonist of cell death	BC006762|Bad|12015|BCL2-associated agonist of cell death
mm9_v1_chr8_-_87370795_87370829	0.0498001	NHLH1,2.p2	NM_007591|Calr|12317|calreticulin
mm9_v1_chr5_+_91201538_91201542	0.0497619	NHLH1,2.p2	AB017491|Pf4|56744|platelet factor 4
mm9_v1_chr17_+_29839370_29839515	0.0497611	NHLH1,2.p2	
mm9_v1_chr8_+_73435716_73435719	0.0496952	NHLH1,2.p2	AK158860|Mtap1s|270058|microtubule-associated protein 1S
mm9_v1_chr8_-_108224992_108225001	0.0494668	NHLH1,2.p2	NM_001012638|Acd|497652|adrenocortical dysplasia	AK170606|Acd|497652|adrenocortical dysplasia
mm9_v1_chr17_-_57387033_57387124	0.0493183	NHLH1,2.p2	AK047364|Gpr108|78308|G protein-coupled receptor 108	AF376726|Gpr108|78308|G protein-coupled receptor 108	AX775897|Gpr108|78308|G protein-coupled receptor 108	AK082797|Gpr108|78308|G protein-coupled receptor 108	BC016104|Gpr108|78308|G protein-coupled receptor 108	NM_030084|Gpr108|78308|G protein-coupled receptor 108	AK159313|Gpr108|78308|G protein-coupled receptor 108	AK170948|Gpr108|78308|G protein-coupled receptor 108	AK171030|Gpr108|78308|G protein-coupled receptor 108	AX775895|Gpr108|78308|G protein-coupled receptor 108
mm9_v1_chr17_-_35804498_35804538	0.0492658	NHLH1,2.p2	AK155386|Vars2|68915|valyl-tRNA synthetase 2, mitochondrial (putative)	AK129008|Vars2|68915|valyl-tRNA synthetase 2, mitochondrial (putative)	NM_175137|Vars2|68915|valyl-tRNA synthetase 2, mitochondrial (putative)
mm9_v1_chr11_+_78640059_78640096	0.0490891	NHLH1,2.p2	AK007467|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	AK144380|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	NM_001076681|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene
mm9_v1_chr3_+_96500294_96500403	0.0487133	NHLH1,2.p2	NM_146135|Pias3|229615|protein inhibitor of activated STAT 3	AK040619|Pias3|229615|protein inhibitor of activated STAT 3	AK077551|Pias3|229615|protein inhibitor of activated STAT 3	AK085503|Pias3|229615|protein inhibitor of activated STAT 3	BC023128|Pias3|229615|protein inhibitor of activated STAT 3
mm9_v1_chr7_+_107433934_107434091	0.0487099	NHLH1,2.p2	AY313449|P4ha3|320452|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III	BC082538|P4ha3|320452|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III	NM_177161|P4ha3|320452|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III	AK086780|P4ha3|320452|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III
mm9_v1_chr10_+_105011586_105011626	0.0482436	NHLH1,2.p2	AK034146|9330159K06|327812|hypothetical protein 9330159K06
mm9_v1_chr10_+_127662893_127662937	0.0480468	NHLH1,2.p2	AK053490|Mip|17339|major intrinsic protein of eye lens fiber	AK136287|Mip|17339|major intrinsic protein of eye lens fiber	NM_008600|Mip|17339|major intrinsic protein of eye lens fiber	BC082567|Mip|17339|major intrinsic protein of eye lens fiber	AK053494|Mip|17339|major intrinsic protein of eye lens fiber	U27502|Mip|17339|major intrinsic protein of eye lens fiber
mm9_v1_chr11_-_119959959_119959998	0.0479702	NHLH1,2.p2	BC094318|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	BC049110|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	BC064313|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene
mm9_v1_chr4_-_148829073_148829090	0.0479439	NHLH1,2.p2	BC028432|Rbp7|63954|retinol binding protein 7, cellular	AF260923|Rbp7|63954|retinol binding protein 7, cellular	NM_022020|Rbp7|63954|retinol binding protein 7, cellular	AY141971|Rbp7|63954|retinol binding protein 7, cellular
mm9_v1_chr6_-_54942840_54942869	0.0478203	NHLH1,2.p2	BC080818|Ggct|110175|gamma-glutamyl cyclotransferase	AK028830|Ggct|110175|gamma-glutamyl cyclotransferase	AK079465|Ggct|110175|gamma-glutamyl cyclotransferase	NM_026637|Ggct|110175|gamma-glutamyl cyclotransferase	AK008719|Ggct|110175|gamma-glutamyl cyclotransferase
mm9_v1_chr16_-_88648032_88648040	0.0476316	NHLH1,2.p2	BC128283|Krtap26-1|69533|keratin associated protein 26-1	BC139410|Krtap26-1|69533|keratin associated protein 26-1	BC139411|Krtap26-1|69533|keratin associated protein 26-1	AK009086|Krtap26-1|69533|keratin associated protein 26-1	NM_027105|Krtap26-1|69533|keratin associated protein 26-1
mm9_v1_chr2_+_75497282_75497379	0.0476288	NHLH1,2.p2	NM_053263|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_146130|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_198090|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK133860|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK010481|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC038364|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK169663|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AB201711|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC057655|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC062198|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AF463524|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116250|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116251|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC157904|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC157919|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158038|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158074|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC172011|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC023908|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC064824|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3
mm9_v1_chr2_+_26244843_26244934	0.0475862	NHLH1,2.p2	AK147110|Pmpca|66865|peptidase (mitochondrial processing) alpha	AK004549|Pmpca|66865|peptidase (mitochondrial processing) alpha	AK075965|Pmpca|66865|peptidase (mitochondrial processing) alpha	AK077218|Pmpca|66865|peptidase (mitochondrial processing) alpha	AK167975|Pmpca|66865|peptidase (mitochondrial processing) alpha	NM_173180|Pmpca|66865|peptidase (mitochondrial processing) alpha	AK032081|Pmpca|66865|peptidase (mitochondrial processing) alpha	AK150118|Pmpca|66865|peptidase (mitochondrial processing) alpha	AK161291|Pmpca|66865|peptidase (mitochondrial processing) alpha	AK169325|Pmpca|66865|peptidase (mitochondrial processing) alpha	AK169342|Pmpca|66865|peptidase (mitochondrial processing) alpha	BC010810|Pmpca|66865|peptidase (mitochondrial processing) alpha	AK158990|Pmpca|66865|peptidase (mitochondrial processing) alpha
mm9_v1_chr4_-_118130054_118130099	0.0475358	NHLH1,2.p2	AF360122|Mpl|17480|myeloproliferative leukemia virus oncogene	X73677|Mpl|17480|myeloproliferative leukemia virus oncogene	BC146612|Mpl|17480|myeloproliferative leukemia virus oncogene	BC101943|Mpl|17480|myeloproliferative leukemia virus oncogene	BC103513|Mpl|17480|myeloproliferative leukemia virus oncogene	BC103514|Mpl|17480|myeloproliferative leukemia virus oncogene	BC103515|Mpl|17480|myeloproliferative leukemia virus oncogene	BC146613|Mpl|17480|myeloproliferative leukemia virus oncogene	Z22649|Mpl|17480|myeloproliferative leukemia virus oncogene	AK041166|Mpl|17480|myeloproliferative leukemia virus oncogene	NM_001122949|Mpl|17480|myeloproliferative leukemia virus oncogene	NM_010823|Mpl|17480|myeloproliferative leukemia virus oncogene
mm9_v1_chr17_-_23701091_23701154	0.0473656	NHLH1,2.p2	AK147992|Zfp213|449521|zinc finger protein 213	BC038178|Zfp213|449521|zinc finger protein 213	AK039822|6330415G19Rik|320020|RIKEN cDNA 6330415G19 gene
mm9_v1_chr4_+_138433841_138433860	0.0473521	NHLH1,2.p2	AK148187|Pla2g2e|26970|phospholipase A2, group IIE	AF112984|Pla2g2e|26970|phospholipase A2, group IIE	NM_012044|Pla2g2e|26970|phospholipase A2, group IIE	AF166098|Pla2g2e|26970|phospholipase A2, group IIE
mm9_v1_chr7_-_19751441_19751475	0.0473283	NHLH1,2.p2	AK050472|Gipr|381853|gastric inhibitory polypeptide receptor	AK146552|Gipr|381853|gastric inhibitory polypeptide receptor	NM_001080815|Gipr|381853|gastric inhibitory polypeptide receptor
mm9_v1_chr5_-_137041850_137041964	0.0469776	NHLH1,2.p2	BC079570|Cux1|13047|cut-like homeobox 1
mm9_v1_chr7_-_13404178_13404219	0.0466825	NHLH1,2.p2	BC139021|Zfp329|67230|zinc finger protein 329	BC139023|Zfp329|67230|zinc finger protein 329	BC072665|Zfp329|67230|zinc finger protein 329	AK013271|Zfp329|67230|zinc finger protein 329	AK014562|Zfp329|67230|zinc finger protein 329	AK051535|Zfp329|67230|zinc finger protein 329	NM_026046|Zfp329|67230|zinc finger protein 329
mm9_v1_chr19_+_57527393_57527409	0.0465637	NHLH1,2.p2	NM_028115|Trub1|72133|TruB pseudouridine (psi) synthase homolog 1 (E. coli)	NM_029839|Trub1|72133|TruB pseudouridine (psi) synthase homolog 1 (E. coli)	AK011362|Trub1|72133|TruB pseudouridine (psi) synthase homolog 1 (E. coli)
mm9_v1_chr11_-_17847399_17847495	0.0461495	NHLH1,2.p2	AK018594|Etaa1|68145|Ewing's tumor-associated antigen 1
mm9_v1_chr9_-_119734573_119734593	0.0460421	NHLH1,2.p2	AF118044|Scn11a|24046|sodium channel, voltage-gated, type XI, alpha	NM_011887|Scn11a|24046|sodium channel, voltage-gated, type XI, alpha
mm9_v1_chr7_+_30023368_30023534	0.0454799	NHLH1,2.p2	AK020444|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)
mm9_v1_chrX_-_100958883_100958891	0.0453521	NHLH1,2.p2	BC158129|Gm6222|621381|predicted pseudogene 6222	NM_001170979|Gm6222|621381|predicted pseudogene 6222
mm9_v1_chr4_-_133928435_133928461	0.0453237	NHLH1,2.p2	AK164184|Extl1|56219|exostoses (multiple)-like 1	AK085075|Extl1|56219|exostoses (multiple)-like 1	AK172619|Extl1|56219|exostoses (multiple)-like 1	NM_019578|Extl1|56219|exostoses (multiple)-like 1
mm9_v1_chr11_+_5420920_5421028	0.0451654	NHLH1,2.p2	AF027963|Xbp1|22433|X-box binding protein 1	NM_013842|Xbp1|22433|X-box binding protein 1	AK007724|Xbp1|22433|X-box binding protein 1	AK145241|Xbp1|22433|X-box binding protein 1	BC029197|Xbp1|22433|X-box binding protein 1	BC008153|Xbp1|22433|X-box binding protein 1
mm9_v1_chr7_+_51307659_51307682	0.044981	NHLH1,2.p2	AB039275|Klk1b27|16619|kallikrein 1-related peptidase b27	NM_020268|Klk1b27|16619|kallikrein 1-related peptidase b27	BC132090|Klk1b27|16619|kallikrein 1-related peptidase b27	BC132665|Klk1b27|16619|kallikrein 1-related peptidase b27
mm9_v1_chr10_+_127848671_127848731	0.0449024	NHLH1,2.p2	AK045760|Rnf41|67588|ring finger protein 41	NM_001164237|Rnf41|67588|ring finger protein 41	NM_026259|Rnf41|67588|ring finger protein 41	AK030558|Rnf41|67588|ring finger protein 41	BC049078|Rnf41|67588|ring finger protein 41	AF305730|Rnf41|67588|ring finger protein 41
mm9_v1_chr9_+_111020579_111020694	0.0444202	NHLH1,2.p2	NM_001164838|Lrrfip2|71268|leucine rich repeat (in FLII) interacting protein 2	NM_027742|Lrrfip2|71268|leucine rich repeat (in FLII) interacting protein 2	AK078881|Lrrfip2|71268|leucine rich repeat (in FLII) interacting protein 2
mm9_v1_chr16_+_22892125_22892139	0.0440525	NHLH1,2.p2	BC012678|Ahsg|11625|alpha-2-HS-glycoprotein	S96534|Ahsg|11625|alpha-2-HS-glycoprotein
mm9_v1_chr14_+_35123796_35123914	0.044004	NHLH1,2.p2	AK150637|Glud1|14661|glutamate dehydrogenase 1	NM_008133|Glud1|14661|glutamate dehydrogenase 1
mm9_v1_chr14_+_55045792_55045808	0.0438994	NHLH1,2.p2	BC060043|Mrpl52|68836|mitochondrial ribosomal protein L52
mm9_v1_chr9_+_51856305_51856361	0.0431781	NHLH1,2.p2	AK088292|Rdx|19684|radixin	AK156370|Rdx|19684|radixin
mm9_v1_chr5_+_114615526_114615586	0.0431445	NHLH1,2.p2	AY451394|Acacb|100705|acetyl-Coenzyme A carboxylase beta	NM_133904|Acacb|100705|acetyl-Coenzyme A carboxylase beta	AF290178|Acacb|100705|acetyl-Coenzyme A carboxylase beta
mm9_v1_chr15_-_75911299_75911319	0.0431282	NHLH1,2.p2	BC010601|Puf60|67959|poly-U binding splicing factor 60	NM_001164600|Puf60|67959|poly-U binding splicing factor 60	AK013342|Puf60|67959|poly-U binding splicing factor 60	AK012434|Puf60|67959|poly-U binding splicing factor 60
mm9_v1_chrX_-_8553684_8553684	0.0430765	NHLH1,2.p2	NM_001085525|Gm14511|434727|predicted gene 14511
mm9_v1_chr3_-_5576086_5576166	0.042878	NHLH1,2.p2	BC012404|Pxmp3|19302|peroxisomal membrane protein 3	AK151121|Pxmp3|19302|peroxisomal membrane protein 3	AK152331|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163304|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163305|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163306|Pxmp3|19302|peroxisomal membrane protein 3	NM_008994|Pxmp3|19302|peroxisomal membrane protein 3	AK146530|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163301|Pxmp3|19302|peroxisomal membrane protein 3
mm9_v1_chr7_-_90803834_90803886	0.0428184	NHLH1,2.p2	AK083338|Il16|16170|interleukin 16	BC026894|Il16|16170|interleukin 16	AK134007|Il16|16170|interleukin 16
mm9_v1_chr5_+_93696645_93696792	0.0427181	NHLH1,2.p2	BC060180|Ccng2|12452|cyclin G2	BC088980|Ccng2|12452|cyclin G2
mm9_v1_chr2_-_17652669_17652710	0.0427055	NHLH1,2.p2	BC025863|Nebl|74103|nebulette	AK036214|Nebl|74103|nebulette	AK004645|Nebl|74103|nebulette	NM_028757|Nebl|74103|nebulette
mm9_v1_chr13_-_70980619_70980688	0.0427038	NHLH1,2.p2	AK173338|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	AK031314|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	AK134523|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	NM_172053|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	BC034739|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16
mm9_v1_chr6_-_38826156_38826247	0.0425017	NHLH1,2.p2	NM_010433|Hipk2|15258|homeodomain interacting protein kinase 2
mm9_v1_chr16_+_58670320_58670440	0.0422481	NHLH1,2.p2	NM_007757|Cpox|12892|coproporphyrinogen oxidase	D16333|Cpox|12892|coproporphyrinogen oxidase	AK157277|Cpox|12892|coproporphyrinogen oxidase
mm9_v1_chr17_+_27154939_27155011	0.0420961	NHLH1,2.p2	AK002723|Ggnbp1|70772|gametogenetin binding protein 1
mm9_v1_chr6_-_124364880_124365084	0.0416438	NHLH1,2.p2	AK088886|Pex5|19305|peroxisomal biogenesis factor 5	AK145361|Pex5|19305|peroxisomal biogenesis factor 5	BC029748|Pex5|19305|peroxisomal biogenesis factor 5	AK145111|Pex5|19305|peroxisomal biogenesis factor 5	AJ416473|Pex5|19305|peroxisomal biogenesis factor 5	AK161470|Pex5|19305|peroxisomal biogenesis factor 5	NM_008995|Pex5|19305|peroxisomal biogenesis factor 5	NM_175933|Pex5|19305|peroxisomal biogenesis factor 5
mm9_v1_chr11_-_74739106_74739232	0.0416105	NHLH1,2.p2	AB235396|Srr|27364|serine racemase	BC011164|Srr|27364|serine racemase	AK031687|Srr|27364|serine racemase	AK079343|Srr|27364|serine racemase	AK080470|Srr|27364|serine racemase	AK080830|Srr|27364|serine racemase	AK017235|Srr|27364|serine racemase	AK028034|Srr|27364|serine racemase	AK170096|Srr|27364|serine racemase	AK170471|Srr|27364|serine racemase	AB232341|Srr|27364|serine racemase	AK043738|Srr|27364|serine racemase	AK043819|Srr|27364|serine racemase
mm9_v1_chr2_+_120289326_120289332	0.0415867	NHLH1,2.p2	NM_001177799|Capn3|12335|calpain 3	NM_007601|Capn3|12335|calpain 3
mm9_v1_chr11_-_57332054_57332159	0.041563	NHLH1,2.p2	BC019518|Fam114a2|67726|family with sequence similarity 114, member A2	AK018570|Fam114a2|67726|family with sequence similarity 114, member A2	AK076316|Fam114a2|67726|family with sequence similarity 114, member A2	AK149763|Fam114a2|67726|family with sequence similarity 114, member A2	AK007968|Fam114a2|67726|family with sequence similarity 114, member A2	NM_001168667|Fam114a2|67726|family with sequence similarity 114, member A2	NM_001168668|Fam114a2|67726|family with sequence similarity 114, member A2	NM_026342|Fam114a2|67726|family with sequence similarity 114, member A2
mm9_v1_chr8_+_15032567_15032716	0.0414772	NHLH1,2.p2	BC049667|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11	BC038875|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11
mm9_v1_chr10_+_77107247_77107285	0.041241	NHLH1,2.p2	AK192992|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2
mm9_v1_chr7_-_31107320_31107393	0.0407928	NHLH1,2.p2	AK155437|Sdhaf1|68332|succinate dehydrogenase complex assembly factor 1	AK002462|Sdhaf1|68332|succinate dehydrogenase complex assembly factor 1	BC147173|Sdhaf1|68332|succinate dehydrogenase complex assembly factor 1	BC147174|Sdhaf1|68332|succinate dehydrogenase complex assembly factor 1	NM_001033140|Sdhaf1|68332|succinate dehydrogenase complex assembly factor 1
mm9_v1_chr8_+_75072314_75072476	0.0404709	NHLH1,2.p2	AK054489|1700085D22Rik|73512|RIKEN cDNA 1700085D22 gene	AK007007|1700085D22Rik|73512|RIKEN cDNA 1700085D22 gene
mm9_v1_chr12_-_21423296_21423379	0.0402847	NHLH1,2.p2	BC090838|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	NM_011739|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	BC110680|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm9_v1_chr17_+_35068184_35068197	0.0398354	NHLH1,2.p2	NM_010893|Neu1|18010|neuraminidase 1
mm9_v1_chr13_+_67033746_67033766	0.0398059	NHLH1,2.p2	AK085857|Ptdss1|19210|phosphatidylserine synthase 1	NM_008959|Ptdss1|19210|phosphatidylserine synthase 1
mm9_v1_chr6_+_121956815_121956815	0.0396008	NHLH1,2.p2	M65238|Mug2|17837|murinoglobulin 2	NM_008646|Mug2|17837|murinoglobulin 2
mm9_v1_chr11_-_78959855_78959908	0.0392658	NHLH1,2.p2	NM_013571|Ksr1|16706|kinase suppressor of ras 1	U43585|Ksr1|16706|kinase suppressor of ras 1	AK036566|Ksr1|16706|kinase suppressor of ras 1
mm9_v1_chr12_+_88943636_88943653	0.0388489	NHLH1,2.p2	AK145346|Oog1|193322|oogenesin 1	AK087852|Oog1|193322|oogenesin 1	AK135749|Oog1|193322|oogenesin 1	AK143386|Oog1|193322|oogenesin 1	NM_178657|Oog1|193322|oogenesin 1	BC086484|Oog1|193322|oogenesin 1
mm9_v1_chr12_+_88614091_88614155	0.038841	NHLH1,2.p2	AK191114|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)	AK177365|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)	AK182129|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)
mm9_v1_chr6_-_122552269_122552466	0.0388285	NHLH1,2.p2	AK146427|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	AK151799|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	AK166412|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	AK165209|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	BC003792|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	NM_001134391|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	NM_031159|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	U22262|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	U22263|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
mm9_v1_chr10_+_74523775_74523878	0.0386408	NHLH1,2.p2	BC131682|Bcr|110279|breakpoint cluster region
mm9_v1_chr11_-_120051109_120051205	0.0383443	NHLH1,2.p2	AK013071|2810410L24Rik|100042332|RIKEN cDNA 2810410L24 gene	AK164256|2810410L24Rik|100042332|RIKEN cDNA 2810410L24 gene	AK162474|2810410L24Rik|100042332|RIKEN cDNA 2810410L24 gene
mm9_v1_chr13_+_63066185_63066252	0.0381102	NHLH1,2.p2	AK044477|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene
mm9_v1_chr14_-_21167190_21167261	0.0379476	NHLH1,2.p2	AK043261|Ecd|70601|ecdysoneless homolog (Drosophila)
mm9_v1_chr7_-_38804503_38804582	0.0378692	NHLH1,2.p2	AK160558|C80913|19777|expressed sequence C80913	AK155994|C80913|19777|expressed sequence C80913	AK166566|C80913|19777|expressed sequence C80913	AK170929|C80913|19777|expressed sequence C80913	NM_011274|C80913|19777|expressed sequence C80913
mm9_v1_chr16_+_22892156_22892180	0.0377533	NHLH1,2.p2	BC019822|Ahsg|11625|alpha-2-HS-glycoprotein
mm9_v1_chr3_-_5576206_5576238	0.0376942	NHLH1,2.p2	AF031128|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163302|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163303|Pxmp3|19302|peroxisomal membrane protein 3
mm9_v1_chrX_-_133268136_133268249	0.0375179	NHLH1,2.p2	AK211563|Morf4l2|56397|mortality factor 4 like 2	AK211831|Morf4l2|56397|mortality factor 4 like 2
mm9_v1_chr9_+_57437238_57437346	0.037429	NHLH1,2.p2	NM_027895|Ulk3|71742|unc-51-like kinase 3 (C. elegans)	BC037093|Ulk3|71742|unc-51-like kinase 3 (C. elegans)	AK004783|Ulk3|71742|unc-51-like kinase 3 (C. elegans)	BC151153|Ulk3|71742|unc-51-like kinase 3 (C. elegans)	AK154642|Ulk3|71742|unc-51-like kinase 3 (C. elegans)
mm9_v1_chr19_+_17468599_17468672	0.0374193	NHLH1,2.p2	AK008352|Rfk|54391|riboflavin kinase	AK010607|Rfk|54391|riboflavin kinase	BC051021|Rfk|54391|riboflavin kinase	BC033521|Rfk|54391|riboflavin kinase
mm9_v1_chr4_-_117807482_117807555	0.0373782	NHLH1,2.p2	AK013016|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	AK005053|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	NM_009176|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	AK136442|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	BC006710|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	NM_001161774|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3
mm9_v1_chr7_+_51443605_51443632	0.0373598	NHLH1,2.p2	BC146015|Klk1b24|16617|kallikrein 1-related peptidase b24	BC146019|Klk1b24|16617|kallikrein 1-related peptidase b24	AB039277|Klk1b24|16617|kallikrein 1-related peptidase b24	NM_010643|Klk1b24|16617|kallikrein 1-related peptidase b24
mm9_v1_chr6_+_83004687_83004775	0.0373536	NHLH1,2.p2	AK171202|Aup1|11993|ancient ubiquitous protein 1	AK171011|Aup1|11993|ancient ubiquitous protein 1	AK171184|Aup1|11993|ancient ubiquitous protein 1	BC016485|Aup1|11993|ancient ubiquitous protein 1	AK144497|Aup1|11993|ancient ubiquitous protein 1	AK158035|Aup1|11993|ancient ubiquitous protein 1	AK167335|Aup1|11993|ancient ubiquitous protein 1	AK171249|Aup1|11993|ancient ubiquitous protein 1	AK171541|Aup1|11993|ancient ubiquitous protein 1	U41736|Aup1|11993|ancient ubiquitous protein 1	AK171621|Aup1|11993|ancient ubiquitous protein 1	BC012699|Aup1|11993|ancient ubiquitous protein 1
mm9_v1_chr5_+_110539110_110539110	0.0367223	NHLH1,2.p2	AK043719|Zfp605|675812|zinc finger protein 605	NM_001163996|Zfp605|675812|zinc finger protein 605
mm9_v1_chr2_+_11627013_11627178	0.0366727	NHLH1,2.p2	BC069881|Il15ra|16169|interleukin 15 receptor, alpha chain	AK040940|Il15ra|16169|interleukin 15 receptor, alpha chain	AK080000|Il15ra|16169|interleukin 15 receptor, alpha chain	BC022705|Il15ra|16169|interleukin 15 receptor, alpha chain	NM_133836|Il15ra|16169|interleukin 15 receptor, alpha chain	AY221616|Il15ra|16169|interleukin 15 receptor, alpha chain	AY221617|Il15ra|16169|interleukin 15 receptor, alpha chain	AY221618|Il15ra|16169|interleukin 15 receptor, alpha chain	AY221619|Il15ra|16169|interleukin 15 receptor, alpha chain
mm9_v1_chr7_-_105805050_105805106	0.036565	NHLH1,2.p2	BC066050|2210018M11Rik|233545|RIKEN cDNA 2210018M11 gene	BC039956|2210018M11Rik|233545|RIKEN cDNA 2210018M11 gene	BC089304|2210018M11Rik|233545|RIKEN cDNA 2210018M11 gene	NM_172280|2210018M11Rik|233545|RIKEN cDNA 2210018M11 gene	AK032985|2210018M11Rik|233545|RIKEN cDNA 2210018M11 gene
mm9_v1_chr2_+_120289460_120289608	0.0364375	NHLH1,2.p2	AF127766|Capn3|12335|calpain 3	BC107011|Capn3|12335|calpain 3	BC139790|Capn3|12335|calpain 3	X92523|Capn3|12335|calpain 3
mm9_v1_chr19_+_56905201_56905201	0.0363666	NHLH1,2.p2	AB183528|Tdrd1|83561|tudor domain containing 1	NM_001002241|Tdrd1|83561|tudor domain containing 1
mm9_v1_chr4_+_137773045_137773112	0.0361211	NHLH1,2.p2	NM_001122897|Hp1bp3|15441|heterochromatin protein 1, binding protein 3
mm9_v1_chr5_-_121199781_121199885	0.0359819	NHLH1,2.p2	AF418010|Oas2|246728|2'-5' oligoadenylate synthetase 2	BC118538|Oas2|246728|2'-5' oligoadenylate synthetase 2	NM_145227|Oas2|246728|2'-5' oligoadenylate synthetase 2	AB067535|Oas2|246728|2'-5' oligoadenylate synthetase 2
mm9_v1_chr9_-_59334393_59334511	0.035845	NHLH1,2.p2	BC057680|Arih1|23806|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)
mm9_v1_chr1_+_89102385_89102388	0.0356948	NHLH1,2.p2	AK047974|Chrng|11449|cholinergic receptor, nicotinic, gamma polypeptide	NM_009604|Chrng|11449|cholinergic receptor, nicotinic, gamma polypeptide	X03818|Chrng|11449|cholinergic receptor, nicotinic, gamma polypeptide
mm9_v1_chr8_+_87356149_87356307	0.0354495	NHLH1,2.p2	AK002738|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK003314|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK019570|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK028227|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	BC061069|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	NM_183358|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK009723|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	BC022592|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1
mm9_v1_chr8_+_89996742_89996746	0.0353545	NHLH1,2.p2	AK144513|Gm2694|100040294|predicted gene 2694
mm9_v1_chr3_+_89019126_89019154	0.035252	NHLH1,2.p2	L04302|Thbs3|21827|thrombospondin 3	L24434|Thbs3|21827|thrombospondin 3	BC060104|Thbs3|21827|thrombospondin 3	BC053023|Thbs3|21827|thrombospondin 3
mm9_v1_chr12_+_74686027_74686090	0.0352148	NHLH1,2.p2	BC031121|Prkch|18755|protein kinase C, eta	NM_008856|Prkch|18755|protein kinase C, eta	D90242|Prkch|18755|protein kinase C, eta
mm9_v1_chr2_+_4897167_4897179	0.0351494	NHLH1,2.p2	EU368184|Ucma|68527|upper zone of growth plate and cartilage matrix associated	NM_001113558|Ucma|68527|upper zone of growth plate and cartilage matrix associated	NM_001165932|Ucma|68527|upper zone of growth plate and cartilage matrix associated	NM_026754|Ucma|68527|upper zone of growth plate and cartilage matrix associated
mm9_v1_chr4_-_86204177_86204229	0.0350946	NHLH1,2.p2	AK015673|Fam154a|75811|family with sequence similarity 154, member A	NM_001081096|Fam154a|75811|family with sequence similarity 154, member A	AK076898|Fam154a|75811|family with sequence similarity 154, member A
mm9_v1_chr8_-_44226818_44226839	0.0348495	NHLH1,2.p2	BC141202|Triml1|244448|tripartite motif family-like 1	BC145531|Triml1|244448|tripartite motif family-like 1	AK077092|Triml1|244448|tripartite motif family-like 1	NM_177742|Triml1|244448|tripartite motif family-like 1
mm9_v1_chr2_+_152139317_152139577	0.0348047	NHLH1,2.p2	AK192023|Tbc1d20|67231|TBC1 domain family, member 20	AK194089|Tbc1d20|67231|TBC1 domain family, member 20	AK199107|Tbc1d20|67231|TBC1 domain family, member 20	AK202139|Tbc1d20|67231|TBC1 domain family, member 20	AK212404|Tbc1d20|67231|TBC1 domain family, member 20	AK213499|Tbc1d20|67231|TBC1 domain family, member 20	AK219611|Tbc1d20|67231|TBC1 domain family, member 20
mm9_v1_chr4_+_107838038_107838132	0.034442	NHLH1,2.p2	AK153878|Echdc2|52430|enoyl Coenzyme A hydratase domain containing 2	AK166388|Echdc2|52430|enoyl Coenzyme A hydratase domain containing 2	NM_026728|Echdc2|52430|enoyl Coenzyme A hydratase domain containing 2	AK011365|Echdc2|52430|enoyl Coenzyme A hydratase domain containing 2	BC025104|Echdc2|52430|enoyl Coenzyme A hydratase domain containing 2	AK005030|Echdc2|52430|enoyl Coenzyme A hydratase domain containing 2	AK166965|Echdc2|52430|enoyl Coenzyme A hydratase domain containing 2
mm9_v1_chr13_+_90229271_90229367	0.0342608	NHLH1,2.p2	NM_025335|Tmem167|66074|transmembrane protein 167	AK021263|Tmem167|66074|transmembrane protein 167	AK032474|Tmem167|66074|transmembrane protein 167	AK161037|Tmem167|66074|transmembrane protein 167	AK031706|Tmem167|66074|transmembrane protein 167	AK007966|Tmem167|66074|transmembrane protein 167	AK019962|Tmem167|66074|transmembrane protein 167	AK016036|Tmem167|66074|transmembrane protein 167	AK012161|Tmem167|66074|transmembrane protein 167	AK002884|Tmem167|66074|transmembrane protein 167	AK088895|Tmem167|66074|transmembrane protein 167	AK160704|Tmem167|66074|transmembrane protein 167	AK007771|Tmem167|66074|transmembrane protein 167	AK132361|Tmem167|66074|transmembrane protein 167	BC085489|Tmem167|66074|transmembrane protein 167
mm9_v1_chr6_+_29010219_29010223	0.0340079	NHLH1,2.p2	AK142589|Lep|16846|leptin	AK030984|Lep|16846|leptin	NM_008493|Lep|16846|leptin	U18812|Lep|16846|leptin
mm9_v1_chr7_+_13507659_13507740	0.0339154	NHLH1,2.p2	NM_009095|Rps5|20103|ribosomal protein S5	AK002235|Rps5|20103|ribosomal protein S5	AK009663|Rps5|20103|ribosomal protein S5	AK010681|Rps5|20103|ribosomal protein S5	AK012424|Rps5|20103|ribosomal protein S5	AK012481|Rps5|20103|ribosomal protein S5	AK020754|Rps5|20103|ribosomal protein S5	AK050611|Rps5|20103|ribosomal protein S5	AK050622|Rps5|20103|ribosomal protein S5	AK152449|Rps5|20103|ribosomal protein S5	AK160552|Rps5|20103|ribosomal protein S5	AK164079|Rps5|20103|ribosomal protein S5	AK167533|Rps5|20103|ribosomal protein S5	AK168044|Rps5|20103|ribosomal protein S5	AK169016|Rps5|20103|ribosomal protein S5	AK172446|Rps5|20103|ribosomal protein S5	AK020477|Rps5|20103|ribosomal protein S5	AK168106|Rps5|20103|ribosomal protein S5	BC058690|Rps5|20103|ribosomal protein S5	U78085|Rps5|20103|ribosomal protein S5	BC020401|Rps5|20103|ribosomal protein S5	Y12431|Rps5|20103|ribosomal protein S5
mm9_v1_chr15_-_57865754_57865775	0.0338974	NHLH1,2.p2	AK089715|9130401M01Rik|75758|RIKEN cDNA 9130401M01 gene	AK018655|9130401M01Rik|75758|RIKEN cDNA 9130401M01 gene
mm9_v1_chr11_-_72609515_72609577	0.033619	NHLH1,2.p2	AK138991|Cyb5d2|192986|cytochrome b5 domain containing 2	AK034043|Cyb5d2|192986|cytochrome b5 domain containing 2	AK080730|Cyb5d2|192986|cytochrome b5 domain containing 2
mm9_v1_chr11_+_102994627_102994711	0.0331885	NHLH1,2.p2	AK016624|Hexim2|71059|hexamthylene bis-acetamide inducible 2	AK160110|Hexim2|71059|hexamthylene bis-acetamide inducible 2	NM_001130516|Hexim2|71059|hexamthylene bis-acetamide inducible 2	NM_001130515|Hexim2|71059|hexamthylene bis-acetamide inducible 2	NM_027658|Hexim2|71059|hexamthylene bis-acetamide inducible 2	BC026458|Hexim2|71059|hexamthylene bis-acetamide inducible 2	BC115597|Hexim2|71059|hexamthylene bis-acetamide inducible 2	BC115598|Hexim2|71059|hexamthylene bis-acetamide inducible 2
mm9_v1_chr7_-_138465593_138465805	0.0330136	NHLH1,2.p2	BC140992|Cuzd1|16433|CUB and zona pellucida-like domains 1	NM_008411|Cuzd1|16433|CUB and zona pellucida-like domains 1	U69699|Cuzd1|16433|CUB and zona pellucida-like domains 1
mm9_v1_chr17_-_57139437_57139440	0.032907	NHLH1,2.p2	AF040960|Pspn|19197|persephin	BC130229|Pspn|19197|persephin	NM_008954|Pspn|19197|persephin
mm9_v1_chr10_-_33764102_33764118	0.0323335	NHLH1,2.p2	AK028763|Fam26d|270711|family with sequence similarity 26, member D	NM_001081165|Fam26d|270711|family with sequence similarity 26, member D
mm9_v1_chr4_-_134941539_134941586	0.0321338	NHLH1,2.p2	AK076488|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	AK014757|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	NM_001168498|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene	NM_181047|A330049M08Rik|230822|RIKEN cDNA A330049M08 gene
mm9_v1_chr1_-_73975053_73975112	0.0320471	NHLH1,2.p2	AK004758|Tns1|21961|tensin 1
mm9_v1_chr12_-_29320801_29320817	0.0320327	NHLH1,2.p2	NM_011300|Rps7|20115|ribosomal protein S7
mm9_v1_chr15_-_101723333_101723350	0.031871	NHLH1,2.p2	AK009075|Krt76|77055|keratin 76	AK036802|Krt76|77055|keratin 76	AK137676|Krt76|77055|keratin 76	NM_001033177|Krt76|77055|keratin 76
mm9_v1_chr2_+_148221107_148221122	0.031843	NHLH1,2.p2	NM_009219|Sstr4|20608|somatostatin receptor 4
mm9_v1_chrX_+_8927724_8927724	0.0314446	NHLH1,2.p2	NM_001085537|Gm14501|547154|predicted gene 14501
mm9_v1_chr7_+_29619155_29619200	0.0309062	NHLH1,2.p2	BC094008|Lgals4|16855|lectin, galactose binding, soluble 4	AF510729|Lgals4|16855|lectin, galactose binding, soluble 4	BC021632|Lgals4|16855|lectin, galactose binding, soluble 4	BC011236|Lgals4|16855|lectin, galactose binding, soluble 4	AF026794|Lgals6|16857|lectin, galactose binding, soluble 6	NM_010707|Lgals6|16857|lectin, galactose binding, soluble 6
mm9_v1_chr17_+_21787557_21787638	0.0308484	NHLH1,2.p2	NM_001166497|3110052M02Rik|73229|RIKEN cDNA 3110052M02 gene	AK014206|3110052M02Rik|73229|RIKEN cDNA 3110052M02 gene	AK155999|3110052M02Rik|73229|RIKEN cDNA 3110052M02 gene	AK161479|3110052M02Rik|73229|RIKEN cDNA 3110052M02 gene	AK084271|3110052M02Rik|73229|RIKEN cDNA 3110052M02 gene	AK148845|3110052M02Rik|73229|RIKEN cDNA 3110052M02 gene
mm9_v1_chr8_-_127472316_127472326	0.0304342	NHLH1,2.p2	AF453878|Egln1|112405|EGL nine homolog 1 (C. elegans)
mm9_v1_chr18_+_32594823_32594898	0.030374	NHLH1,2.p2	AK077987|Bin1|30948|bridging integrator 1
mm9_v1_chr10_+_128390564_128390580	0.0302686	NHLH1,2.p2	L16544|Itga7|16404|integrin alpha 7
mm9_v1_chr19_+_56900698_56900775	0.0302055	NHLH1,2.p2	AB183526|Tdrd1|83561|tudor domain containing 1	NM_001002238|Tdrd1|83561|tudor domain containing 1	AB183527|Tdrd1|83561|tudor domain containing 1	NM_001002240|Tdrd1|83561|tudor domain containing 1	AK029806|Tdrd1|83561|tudor domain containing 1	NM_031387|Tdrd1|83561|tudor domain containing 1
mm9_v1_chr4_+_59594461_59594510	0.0301782	NHLH1,2.p2	AK085899|Hsdl2|72479|hydroxysteroid dehydrogenase like 2	AK136773|Hsdl2|72479|hydroxysteroid dehydrogenase like 2	AK011910|Hsdl2|72479|hydroxysteroid dehydrogenase like 2
mm9_v1_chr1_-_37921651_37921692	0.0300246	NHLH1,2.p2	AK170053|Tsga10|211484|testis specific 10
mm9_v1_chr2_-_113669243_113669277	0.0298038	NHLH1,2.p2	AK019337|Scg5|20394|secretogranin V	NM_009162|Scg5|20394|secretogranin V	AK017481|Scg5|20394|secretogranin V
mm9_v1_chr7_+_125777249_125777358	0.0294131	NHLH1,2.p2	AY263159|Tmc5|74424|transmembrane channel-like gene family 5	NM_028930|Tmc5|74424|transmembrane channel-like gene family 5	AK016573|Tmc5|74424|transmembrane channel-like gene family 5	AY236495|Tmc5|74424|transmembrane channel-like gene family 5
mm9_v1_chr15_-_96473193_96473343	0.0292287	NHLH1,2.p2	AK162612|Slc38a1|105727|solute carrier family 38, member 1	AK081724|Slc38a1|105727|solute carrier family 38, member 1	NM_001166458|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr5_+_103274265_103274294	0.0291177	NHLH1,2.p2	AK002660|Arhgap24|231532|Rho GTPase activating protein 24
mm9_v1_chr11_-_115569734_115569779	0.0290001	NHLH1,2.p2	AK196759|Grb2|14784|growth factor receptor bound protein 2	BC085254|Grb2|14784|growth factor receptor bound protein 2
mm9_v1_chr7_-_147222263_147222306	0.028624	NHLH1,2.p2	AK158060|Tubgcp2|74237|tubulin, gamma complex associated protein 2	AK033157|Tubgcp2|74237|tubulin, gamma complex associated protein 2	AK045084|Tubgcp2|74237|tubulin, gamma complex associated protein 2
mm9_v1_chr12_-_4914313_4914463	0.0285948	NHLH1,2.p2	AK031821|Ubxn2a|217379|UBX domain protein 2A	NM_145441|Ubxn2a|217379|UBX domain protein 2A	AK134666|Ubxn2a|217379|UBX domain protein 2A	AK041556|Ubxn2a|217379|UBX domain protein 2A	AK161940|Ubxn2a|217379|UBX domain protein 2A
mm9_v1_chr6_+_113342490_113342490	0.0284446	NHLH1,2.p2	AM690746|Ttll3|101100|tubulin tyrosine ligase-like family, member 3	NM_133923|Ttll3|101100|tubulin tyrosine ligase-like family, member 3
mm9_v1_chr6_+_83293435_83293444	0.0283274	NHLH1,2.p2	AK196174|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)
mm9_v1_chr14_+_21895418_21895486	0.0282384	NHLH1,2.p2	AK160264|Adk|11534|adenosine kinase
mm9_v1_chr11_-_99476128_99476159	0.0282268	NHLH1,2.p2	NM_001177537|Gm11562|100041477|predicted gene 11562	AK017442|Krtap2-4|71453|keratin associated protein 2-4	NM_027800|Krtap2-4|71453|keratin associated protein 2-4
mm9_v1_chr9_+_72833379_72833456	0.0282014	NHLH1,2.p2	AK076325|Ccpg1|72278|cell cycle progression 1	AK128894|Ccpg1|72278|cell cycle progression 1	AK148864|Ccpg1|72278|cell cycle progression 1	BC082602|Ccpg1|72278|cell cycle progression 1	BC043049|Ccpg1|72278|cell cycle progression 1	AK007973|Ccpg1|72278|cell cycle progression 1	AK134675|Ccpg1|72278|cell cycle progression 1	AK032645|Ccpg1|72278|cell cycle progression 1
mm9_v1_chr2_+_151822270_151822363	0.0281317	NHLH1,2.p2	AK029091|2310046K01Rik|69698|RIKEN cDNA 2310046K01 gene	AK170158|2310046K01Rik|69698|RIKEN cDNA 2310046K01 gene	AK009850|2310046K01Rik|69698|RIKEN cDNA 2310046K01 gene
mm9_v1_chr9_+_121551833_121551954	0.0278889	NHLH1,2.p2	AK052465|Vipr1|22354|vasoactive intestinal peptide receptor 1	NM_011703|Vipr1|22354|vasoactive intestinal peptide receptor 1	AF266282|Vipr1|22354|vasoactive intestinal peptide receptor 1
mm9_v1_chr16_+_16213397_16213405	0.0278711	NHLH1,2.p2	AK005020|Pkp2|67451|plakophilin 2
mm9_v1_chr4_+_88473179_88473319	0.0273714	NHLH1,2.p2	BC151087|Ifna6|15969|interferon alpha 6	NM_206871|Ifna6|15969|interferon alpha 6
mm9_v1_chr4_+_111087610_111087629	0.0270603	NHLH1,2.p2	AK075885|Bend5|67621|BEN domain containing 5	NM_026279|Bend5|67621|BEN domain containing 5	AK014057|Bend5|67621|BEN domain containing 5
mm9_v1_chr6_-_23082901_23082994	0.0270054	NHLH1,2.p2	AK149400|Aass|30956|aminoadipate-semialdehyde synthase	AK098141|Aass|30956|aminoadipate-semialdehyde synthase	AK136216|Aass|30956|aminoadipate-semialdehyde synthase	BC005420|Aass|30956|aminoadipate-semialdehyde synthase	AK044323|Aass|30956|aminoadipate-semialdehyde synthase	NM_013930|Aass|30956|aminoadipate-semialdehyde synthase
mm9_v1_chr12_+_80398268_80398337	0.0269583	NHLH1,2.p2	AK032913|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)	NM_009014|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)	AK015771|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)
mm9_v1_chr10_+_79379715_79379715	0.0264502	NHLH1,2.p2	AK039628|Kiss1r|114229|KISS1 receptor	AK139303|Kiss1r|114229|KISS1 receptor	NM_053244|Kiss1r|114229|KISS1 receptor
mm9_v1_chr1_+_37929013_37929099	0.0264247	NHLH1,2.p2	AK048005|Lipt1|623661|lipoyltransferase 1	NM_001037918|Lipt1|623661|lipoyltransferase 1	BC019519|Lipt1|623661|lipoyltransferase 1
mm9_v1_chr11_-_69735459_69735459	0.0263469	NHLH1,2.p2	AY129323|Eif5a|276770|eukaryotic translation initiation factor 5A	NM_001166593|Eif5a|276770|eukaryotic translation initiation factor 5A
mm9_v1_chr5_+_32535080_32535120	0.0259836	NHLH1,2.p2	AK030142|Plb1|665270|phospholipase B1	NM_030072|Plb1|665270|phospholipase B1	AK015301|Plb1|665270|phospholipase B1	AK019494|Plb1|665270|phospholipase B1	AK015993|Plb1|665270|phospholipase B1
mm9_v1_chr4_+_99382314_99382380	0.0259237	NHLH1,2.p2	NM_001081264|Alg6|320438|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase)	AK087075|Alg6|320438|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase)	BC050854|Alg6|320438|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase)	AK036792|Alg6|320438|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase)	AK157903|Alg6|320438|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase)	AK087630|Alg6|320438|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase)	AK171887|Alg6|320438|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase)	BC080867|Alg6|320438|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase)
mm9_v1_chr4_-_141488999_141489010	0.0257145	NHLH1,2.p2	AK148490|Fhad1|329977|forkhead-associated (FHA) phosphopeptide binding domain 1
mm9_v1_chr2_+_129024496_129024619	0.0256965	NHLH1,2.p2	NM_001159593|Slc20a1|20515|solute carrier family 20, member 1	NM_015747|Slc20a1|20515|solute carrier family 20, member 1	AK084159|Slc20a1|20515|solute carrier family 20, member 1	AK155506|Slc20a1|20515|solute carrier family 20, member 1	AK035898|Slc20a1|20515|solute carrier family 20, member 1	AK089184|Slc20a1|20515|solute carrier family 20, member 1	AK003059|Slc20a1|20515|solute carrier family 20, member 1	BC015085|Slc20a1|20515|solute carrier family 20, member 1
mm9_v1_chr11_+_98562626_98562673	0.0255776	NHLH1,2.p2	M13926|Csf3|12985|colony stimulating factor 3 (granulocyte)	NM_009971|Csf3|12985|colony stimulating factor 3 (granulocyte)	AK145177|Csf3|12985|colony stimulating factor 3 (granulocyte)	BC120759|Csf3|12985|colony stimulating factor 3 (granulocyte)	BC120761|Csf3|12985|colony stimulating factor 3 (granulocyte)
mm9_v1_chr3_+_121129502_121129542	0.0255687	NHLH1,2.p2	AK081672|Cnn3|71994|calponin 3, acidic
mm9_v1_chr7_-_133520876_133520891	0.0252063	NHLH1,2.p2	BC085491|Spns1|73658|spinster homolog 1 (Drosophila)
mm9_v1_chr2_+_132641920_132642070	0.0251901	NHLH1,2.p2	AK012845|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK019268|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK133858|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	BC046780|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK017607|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	BC052070|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	NM_025676|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)
mm9_v1_chr17_-_26005645_26005674	0.0250019	NHLH1,2.p2	BC024332|Fam195a|68241|family with sequence similarity 195, member A
mm9_v1_chr19_+_7687030_7687100	0.0249752	NHLH1,2.p2	AK007015|Hrasls5|66727|HRAS-like suppressor family, member 5	AK014971|Hrasls5|66727|HRAS-like suppressor family, member 5	NM_025731|Hrasls5|66727|HRAS-like suppressor family, member 5	BC061008|Hrasls5|66727|HRAS-like suppressor family, member 5	AK006790|Hrasls5|66727|HRAS-like suppressor family, member 5	AK006527|Hrasls5|66727|HRAS-like suppressor family, member 5	AB261168|Hrasls5|66727|HRAS-like suppressor family, member 5	AB447517|Hrasls5|66727|HRAS-like suppressor family, member 5
mm9_v1_chr15_-_83766443_83766524	0.024821	NHLH1,2.p2	AK220412|Efcab6|77627|EF-hand calcium binding domain 6	AK019850|Efcab6|77627|EF-hand calcium binding domain 6	NM_001161628|Efcab6|77627|EF-hand calcium binding domain 6
mm9_v1_chr9_-_63247025_63247103	0.0247578	NHLH1,2.p2	BC100363|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	BC116242|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	BC116243|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	AK054471|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	AK009046|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	AK158428|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	NM_027090|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene
mm9_v1_chr7_+_146434402_146434460	0.0244247	NHLH1,2.p2	AK160932|Pwwp2b|101631|PWWP domain containing 2B
mm9_v1_chr15_+_73253740_73253763	0.0243781	NHLH1,2.p2	AK078348|LOC497255|497255|hypothetical LOC497255
mm9_v1_chr7_-_104566013_104566047	0.0243645	NHLH1,2.p2	BC009165|Thrsp|21835|thyroid hormone responsive SPOT14 homolog (Rattus)	NM_009381|Thrsp|21835|thyroid hormone responsive SPOT14 homolog (Rattus)	AK050300|Thrsp|21835|thyroid hormone responsive SPOT14 homolog (Rattus)
mm9_v1_chr16_-_30258448_30258460	0.0243555	NHLH1,2.p2	
mm9_v1_chr17_+_35031503_35031575	0.0238427	NHLH1,2.p2	BC062159|Zbtb12|193736|zinc finger and BTB domain containing 12	NM_198886|Zbtb12|193736|zinc finger and BTB domain containing 12	BC020447|Zbtb12|193736|zinc finger and BTB domain containing 12
mm9_v1_chr18_+_36440748_36440822	0.0237828	NHLH1,2.p2	NM_008989|Pura|19290|purine rich element binding protein A	U02098|Pura|19290|purine rich element binding protein A
mm9_v1_chr5_-_93473976_93474047	0.0237034	NHLH1,2.p2	AK033423|Ankrd56|78088|ankyrin repeat domain 56	AK137429|Ankrd56|78088|ankyrin repeat domain 56	NM_175270|Ankrd56|78088|ankyrin repeat domain 56
mm9_v1_chr10_-_76978494_76978577	0.0234634	NHLH1,2.p2	BC034216|1810008A18Rik|108707|RIKEN cDNA 1810008A18 gene	AK088306|1810008A18Rik|108707|RIKEN cDNA 1810008A18 gene	AK076516|1810008A18Rik|108707|RIKEN cDNA 1810008A18 gene	AF391115|1810008A18Rik|108707|RIKEN cDNA 1810008A18 gene	NM_133998|1810008A18Rik|108707|RIKEN cDNA 1810008A18 gene
mm9_v1_chr5_+_34974750_34974884	0.0233754	NHLH1,2.p2	
mm9_v1_chr10_+_62443021_62443063	0.0233088	NHLH1,2.p2	BC137736|Rufy2|70432|RUN and FYVE domain-containing 2	BC137737|Rufy2|70432|RUN and FYVE domain-containing 2	BC038265|Rufy2|70432|RUN and FYVE domain-containing 2
mm9_v1_chr5_+_32655941_32655958	0.0231146	NHLH1,2.p2	AK087596|Plb1|665270|phospholipase B1	NM_172147|Plb1|665270|phospholipase B1	BC033606|Plb1|665270|phospholipase B1
mm9_v1_chr16_-_88627910_88627910	0.0229741	NHLH1,2.p2	AK010217|2310079G19Rik|69699|RIKEN cDNA 2310079G19 gene	NM_027173|2310079G19Rik|69699|RIKEN cDNA 2310079G19 gene
mm9_v1_chr7_-_50915515_50915552	0.0228624	NHLH1,2.p2	AY371487|Siglece|83382|sialic acid binding Ig-like lectin E	AY348552|Siglece|83382|sialic acid binding Ig-like lectin E	BC023280|Siglece|83382|sialic acid binding Ig-like lectin E	AF329269|Siglece|83382|sialic acid binding Ig-like lectin E	NM_031181|Siglece|83382|sialic acid binding Ig-like lectin E
mm9_v1_chr11_-_70273333_70273368	0.0228194	NHLH1,2.p2	AK170428|Cxcl16|66102|chemokine (C-X-C motif) ligand 16	BC019961|Cxcl16|66102|chemokine (C-X-C motif) ligand 16
mm9_v1_chr1_+_89087211_89087260	0.0225991	NHLH1,2.p2	L10076|Chrnd|11447|cholinergic receptor, nicotinic, delta polypeptide	BC052153|Chrnd|11447|cholinergic receptor, nicotinic, delta polypeptide	NM_021600|Chrnd|11447|cholinergic receptor, nicotinic, delta polypeptide	BC141376|Chrnd|11447|cholinergic receptor, nicotinic, delta polypeptide	BC141387|Chrnd|11447|cholinergic receptor, nicotinic, delta polypeptide	K02582|Chrnd|11447|cholinergic receptor, nicotinic, delta polypeptide
mm9_v1_chr10_+_63283802_63283803	0.0222642	NHLH1,2.p2	AK015241|Ctnna3|216033|catenin (cadherin associated protein), alpha 3	NM_001164519|Ctnna3|216033|catenin (cadherin associated protein), alpha 3	DQ380430|Ctnna3|216033|catenin (cadherin associated protein), alpha 3
mm9_v1_chr12_-_105013969_105014153	0.0221977	NHLH1,2.p2	BC049255|Serpina1b|20701|serine (or cysteine) preptidase inhibitor, clade A, member 1B	BC106098|Serpina1a|20700|serine (or cysteine) peptidase inhibitor, clade A, member 1A
mm9_v1_chr17_-_36408841_36408948	0.0221934	NHLH1,2.p2	AB046382|Trim39|79263|tripartite motif-containing 39	NM_024468|Trim39|79263|tripartite motif-containing 39
mm9_v1_chr15_-_79763138_79763209	0.0221565	NHLH1,2.p2	BC042657|Cbx7|52609|chromobox homolog 7
mm9_v1_chr17_+_5975585_5975739	0.022086	NHLH1,2.p2	AK163512|Synj2|20975|synaptojanin 2	NM_001113351|Synj2|20975|synaptojanin 2	NM_011523|Synj2|20975|synaptojanin 2	AF041862|Synj2|20975|synaptojanin 2	BC060214|Synj2|20975|synaptojanin 2
mm9_v1_chr4_-_141174547_141174547	0.0219761	NHLH1,2.p2	AK085940|Tmem82|213989|transmembrane protein 82	NM_145987|Tmem82|213989|transmembrane protein 82
mm9_v1_chr16_-_21333381_21333436	0.0218974	NHLH1,2.p2	AK018285|Magef1|76222|melanoma antigen family F, 1
mm9_v1_chr17_+_43804373_43804482	0.0218788	NHLH1,2.p2	AK031733|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1	NM_018887|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1	BC021418|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1	AF237981|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1	BC037663|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1
mm9_v1_chr8_+_55635768_55635781	0.0217938	NHLH1,2.p2	BC108405|Asb5|76294|ankyrin repeat and SOCs box-containing 5	AF398966|Asb5|76294|ankyrin repeat and SOCs box-containing 5
mm9_v1_chr9_+_99370839_99370876	0.0214617	NHLH1,2.p2	BC068205|1600029I14Rik|69797|RIKEN cDNA 1600029I14 gene	AK005560|1600029I14Rik|69797|RIKEN cDNA 1600029I14 gene
mm9_v1_chrY_+_234230_234474	0.0214381	NHLH1,2.p2	AK047790|Kdm5d|20592|lysine (K)-specific demethylase 5D	NM_011419|Kdm5d|20592|lysine (K)-specific demethylase 5D	AK141096|Kdm5d|20592|lysine (K)-specific demethylase 5D	AK140971|Kdm5d|20592|lysine (K)-specific demethylase 5D	BC060077|Kdm5d|20592|lysine (K)-specific demethylase 5D	AF127244|Kdm5d|20592|lysine (K)-specific demethylase 5D	AB221607|Kdm5d|20592|lysine (K)-specific demethylase 5D	Z29652|Kdm5d|20592|lysine (K)-specific demethylase 5D
mm9_v1_chr2_-_22751051_22751075	0.0213095	NHLH1,2.p2	AK079472|A130006I12Rik|319264|RIKEN cDNA A130006I12 gene
mm9_v1_chr16_+_22892112_22892117	0.0212417	NHLH1,2.p2	NM_013465|Ahsg|11625|alpha-2-HS-glycoprotein	AK149474|Ahsg|11625|alpha-2-HS-glycoprotein	AK149479|Ahsg|11625|alpha-2-HS-glycoprotein	AK167709|Ahsg|11625|alpha-2-HS-glycoprotein	AK133523|Ahsg|11625|alpha-2-HS-glycoprotein
mm9_v1_chr10_-_86470647_86470766	0.0211848	NHLH1,2.p2	BC145110|Stab2|192188|stabilin 2	DQ786775|Stab2|192188|stabilin 2	AF364951|Stab2|192188|stabilin 2	NM_138673|Stab2|192188|stabilin 2	AK164675|Stab2|192188|stabilin 2
mm9_v1_chr7_+_53039273_53039322	0.0211623	NHLH1,2.p2	BC094377|Lmtk3|381983|lemur tyrosine kinase 3	NM_001005511|Lmtk3|381983|lemur tyrosine kinase 3	AB288873|Lmtk3|381983|lemur tyrosine kinase 3
mm9_v1_chr7_+_36119340_36119357	0.0210925	NHLH1,2.p2	AK050214|Rhpn2|52428|rhophilin, Rho GTPase binding protein 2	BC100314|Rhpn2|52428|rhophilin, Rho GTPase binding protein 2
mm9_v1_chr9_+_85735986_85736016	0.0208635	NHLH1,2.p2	AK165597|Tpbg|21983|trophoblast glycoprotein	NM_011627|Tpbg|21983|trophoblast glycoprotein	AK051162|Tpbg|21983|trophoblast glycoprotein
mm9_v1_chr8_-_23016871_23016903	0.0207407	NHLH1,2.p2	BC099849|Defb11|246081|defensin beta 11	AJ437646|Defb11|246081|defensin beta 11	NM_139221|Defb11|246081|defensin beta 11
mm9_v1_chr4_+_102658977_102659033	0.0206663	NHLH1,2.p2	BC099549|Tctex1d1|67344|Tctex1 domain containing 1	AK006804|Tctex1d1|67344|Tctex1 domain containing 1	NM_001163767|Tctex1d1|67344|Tctex1 domain containing 1	NM_026100|Tctex1d1|67344|Tctex1 domain containing 1	AK015315|Tctex1d1|67344|Tctex1 domain containing 1	BC048635|Tctex1d1|67344|Tctex1 domain containing 1	BC132398|Tctex1d1|67344|Tctex1 domain containing 1	BC132400|Tctex1d1|67344|Tctex1 domain containing 1	BC145187|Tctex1d1|67344|Tctex1 domain containing 1
mm9_v1_chr2_-_31701432_31701524	0.0205262	NHLH1,2.p2	AK046338|Fibcd1|98970|fibrinogen C domain containing 1	AK084379|Fibcd1|98970|fibrinogen C domain containing 1	BC060634|Fibcd1|98970|fibrinogen C domain containing 1	NM_178887|Fibcd1|98970|fibrinogen C domain containing 1
mm9_v1_chr7_-_108112785_108112972	0.0204226	NHLH1,2.p2	AX775901|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	BC064095|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	BC027331|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	AK008436|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	AK008496|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	NM_183168|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	AK142680|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6
mm9_v1_chr3_+_90017618_90017636	0.0202033	NHLH1,2.p2	AK083292|Rab13|68328|RAB13, member RAS oncogene family	AK080805|Rab13|68328|RAB13, member RAS oncogene family
mm9_v1_chr7_-_108450532_108450603	0.0201266	NHLH1,2.p2	AK158186|Atg16l2|73683|autophagy related 16 like 2 (S. cerevisiae)	AK157410|Atg16l2|73683|autophagy related 16 like 2 (S. cerevisiae)	AK010773|Atg16l2|73683|autophagy related 16 like 2 (S. cerevisiae)	AK155125|Atg16l2|73683|autophagy related 16 like 2 (S. cerevisiae)	NM_001111111|Atg16l2|73683|autophagy related 16 like 2 (S. cerevisiae)
mm9_v1_chr11_-_88921858_88922026	0.0199591	NHLH1,2.p2	AK049335|Dgke|56077|diacylglycerol kinase, epsilon	BC055867|Dgke|56077|diacylglycerol kinase, epsilon
mm9_v1_chr6_+_49269351_49269403	0.0198413	NHLH1,2.p2	AK018135|Ccdc126|57895|coiled-coil domain containing 126	NM_175098|Ccdc126|57895|coiled-coil domain containing 126	BC117837|Ccdc126|57895|coiled-coil domain containing 126
mm9_v1_chr4_-_88168697_88168697	0.019832	NHLH1,2.p2	BC119395|Ifnb1|15977|interferon beta 1, fibroblast	BC119397|Ifnb1|15977|interferon beta 1, fibroblast	K00020|Ifnb1|15977|interferon beta 1, fibroblast	NM_010510|Ifnb1|15977|interferon beta 1, fibroblast
mm9_v1_chr5_+_110539283_110539354	0.0193796	NHLH1,2.p2	AK051473|Zfp605|675812|zinc finger protein 605
mm9_v1_chr3_+_116265890_116265995	0.0192975	NHLH1,2.p2	AK035072|Lrrc39|109245|leucine rich repeat containing 39	NM_027321|Lrrc39|109245|leucine rich repeat containing 39	NM_175413|Lrrc39|109245|leucine rich repeat containing 39	AK039277|Lrrc39|109245|leucine rich repeat containing 39	AK079125|Lrrc39|109245|leucine rich repeat containing 39	AK008119|Lrrc39|109245|leucine rich repeat containing 39	AK052159|Lrrc39|109245|leucine rich repeat containing 39	BC119529|Lrrc39|109245|leucine rich repeat containing 39	BC119530|Lrrc39|109245|leucine rich repeat containing 39	AK046671|Lrrc39|109245|leucine rich repeat containing 39
mm9_v1_chr1_+_166726827_166726862	0.0189303	NHLH1,2.p2	BC046420|Dpt|56429|dermatopontin	AF143374|Dpt|56429|dermatopontin	NM_019759|Dpt|56429|dermatopontin
mm9_v1_chr19_+_45122065_45122176	0.0188074	NHLH1,2.p2	NM_001178012|Sfxn3|94280|sideroflexin 3	NM_001178013|Sfxn3|94280|sideroflexin 3	NM_053197|Sfxn3|94280|sideroflexin 3	BC012208|Sfxn3|94280|sideroflexin 3
mm9_v1_chr5_+_31788112_31788243	0.018359	NHLH1,2.p2	BC057946|4930548H24Rik|67656|RIKEN cDNA 4930548H24 gene	AK016690|4930548H24Rik|67656|RIKEN cDNA 4930548H24 gene	NM_026296|4930548H24Rik|67656|RIKEN cDNA 4930548H24 gene	AK016070|4930548H24Rik|67656|RIKEN cDNA 4930548H24 gene
mm9_v1_chr1_+_136352075_136352146	0.0182599	NHLH1,2.p2	AK034170|Klhl12|240756|kelch-like 12 (Drosophila)	AK165280|Klhl12|240756|kelch-like 12 (Drosophila)	BC034514|Klhl12|240756|kelch-like 12 (Drosophila)	NM_153128|Klhl12|240756|kelch-like 12 (Drosophila)
mm9_v1_chr14_-_35401654_35401841	0.0180837	NHLH1,2.p2	AF228057|Ldb3|24131|LIM domain binding 3	AF228058|Ldb3|24131|LIM domain binding 3	AY206011|Ldb3|24131|LIM domain binding 3	AY206015|Ldb3|24131|LIM domain binding 3	AK172980|Ldb3|24131|LIM domain binding 3	NM_001039074|Ldb3|24131|LIM domain binding 3	BC138793|Ldb3|24131|LIM domain binding 3	BC145420|Ldb3|24131|LIM domain binding 3	AK142292|Ldb3|24131|LIM domain binding 3	AF114378|Ldb3|24131|LIM domain binding 3	AY206012|Ldb3|24131|LIM domain binding 3	AF114379|Ldb3|24131|LIM domain binding 3	AY206013|Ldb3|24131|LIM domain binding 3	BC099596|Ldb3|24131|LIM domain binding 3
mm9_v1_chr17_-_57121530_57121548	0.0179994	NHLH1,2.p2	AF347023|Acer1|171168|alkaline ceramidase 1	AK075884|Acer1|171168|alkaline ceramidase 1	AK028901|Acer1|171168|alkaline ceramidase 1	BC130254|Acer1|171168|alkaline ceramidase 1	NM_175731|Acer1|171168|alkaline ceramidase 1
mm9_v1_chr10_+_94038001_94038001	0.0178832	NHLH1,2.p2	BC026867|Tmcc3|319880|transmembrane and coiled coil domains 3	NM_001168684|Tmcc3|319880|transmembrane and coiled coil domains 3
mm9_v1_chr11_+_7097781_7097869	0.0177694	NHLH1,2.p2	BC013345|Igfbp1|16006|insulin-like growth factor binding protein 1	NM_008341|Igfbp1|16006|insulin-like growth factor binding protein 1	X81579|Igfbp1|16006|insulin-like growth factor binding protein 1
mm9_v1_chr7_-_150970404_150970404	0.0177212	NHLH1,2.p2	AK133657|Mrgpre|244238|MAS-related GPR, member E	NM_175534|Mrgpre|244238|MAS-related GPR, member E
mm9_v1_chr7_+_51251248_51251248	0.0176534	NHLH1,2.p2	BC013660|Klk1b11|16613|kallikrein 1-related peptidase b11	NM_010640|Klk1b11|16613|kallikrein 1-related peptidase b11
mm9_v1_chr11_-_113570833_113570839	0.0174401	NHLH1,2.p2	BC016190|Cpsf4l|52670|cleavage and polyadenylation specific factor 4-like	AK161074|Cpsf4l|52670|cleavage and polyadenylation specific factor 4-like	NM_001164532|Cpsf4l|52670|cleavage and polyadenylation specific factor 4-like	NM_026682|Cpsf4l|52670|cleavage and polyadenylation specific factor 4-like
mm9_v1_chr15_-_3421486_3421486	0.0171321	NHLH1,2.p2	M31680|Ghr|14600|growth hormone receptor	M33324|Ghr|14600|growth hormone receptor	NM_001048147|Ghr|14600|growth hormone receptor
mm9_v1_chr6_+_17257720_17257722	0.0170799	NHLH1,2.p2	AB029930|Cav1|12389|caveolin 1, caveolae protein	AK090074|Cav1|12389|caveolin 1, caveolae protein
mm9_v1_chr13_-_92016479_92016493	0.0169812	NHLH1,2.p2	BC061221|Ckmt2|76722|creatine kinase, mitochondrial 2	NM_198415|Ckmt2|76722|creatine kinase, mitochondrial 2
mm9_v1_chr12_+_88075318_88075318	0.0165743	NHLH1,2.p2	NM_001195767|Gm6772|627607|predicted gene 6772
mm9_v1_chr2_-_110203264_110203281	0.0165302	NHLH1,2.p2	AK159648|Fibin|67606|fin bud initiation factor homolog (zebrafish)
mm9_v1_chr14_-_70919701_70919955	0.0155404	NHLH1,2.p2	AK004995|Bmp1|12153|bone morphogenetic protein 1	L24755|Bmp1|12153|bone morphogenetic protein 1	BC053923|Bmp1|12153|bone morphogenetic protein 1
mm9_v1_chr2_+_32442949_32443144	0.0151163	NHLH1,2.p2	Y15780|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	BC086784|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	NM_011373|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	BC056451|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
mm9_v1_chr2_+_170111212_170111359	0.0150204	NHLH1,2.p2	
mm9_v1_chr1_+_136079079_136079104	0.0148396	NHLH1,2.p2	CT010283|Chi3l1|12654|chitinase 3-like 1	EU313768|Chi3l1|12654|chitinase 3-like 1
mm9_v1_chr6_-_48522660_48522745	0.0147798	NHLH1,2.p2	AK002298|Rarres2|71660|retinoic acid receptor responder (tazarotene induced) 2	NM_027852|Rarres2|71660|retinoic acid receptor responder (tazarotene induced) 2	BC038914|Rarres2|71660|retinoic acid receptor responder (tazarotene induced) 2
mm9_v1_chr19_+_54119671_54119753	0.0147798	NHLH1,2.p2	NM_007417|Adra2a|11551|adrenergic receptor, alpha 2a	AK141573|Adra2a|11551|adrenergic receptor, alpha 2a	AK140461|Adra2a|11551|adrenergic receptor, alpha 2a	AK046802|Adra2a|11551|adrenergic receptor, alpha 2a
mm9_v1_chr9_-_107775011_107775029	0.0144753	NHLH1,2.p2	AK220446|Rbm6|19654|RNA binding motif protein 6	AJ006486|Rbm6|19654|RNA binding motif protein 6	BC026130|Rbm6|19654|RNA binding motif protein 6
mm9_v1_chr9_-_54896301_54896396	0.014162	NHLH1,2.p2	AY574269|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4	AF492840|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4	BC138851|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4	AK140071|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4	NM_148944|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4	BC094889|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4
mm9_v1_chr13_-_67476668_67476698	0.0140849	NHLH1,2.p2	BC141197|Zfp456|408065|zinc finger protein 456	AK164227|Zfp456|408065|zinc finger protein 456	NM_001001186|Zfp456|408065|zinc finger protein 456
mm9_v1_chr14_-_71041964_71042074	0.0139662	NHLH1,2.p2	AK082858|Fgf17|14171|fibroblast growth factor 17	BC119033|Fgf17|14171|fibroblast growth factor 17	BC144776|Fgf17|14171|fibroblast growth factor 17	AK077555|Fgf17|14171|fibroblast growth factor 17	NM_008004|Fgf17|14171|fibroblast growth factor 17
mm9_v1_chr14_+_37881214_37881259	0.0138111	NHLH1,2.p2	BC037728|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	AK044611|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	AK044383|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	NM_173418|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	BC057628|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2
mm9_v1_chrX_-_49154409_49154409	0.0134486	NHLH1,2.p2	AK133417|Usp26|83563|ubiquitin specific peptidase 26	NM_031388|Usp26|83563|ubiquitin specific peptidase 26
mm9_v1_chr13_+_74487790_74487799	0.0132656	NHLH1,2.p2	BC003345|Ccdc127|67433|coiled-coil domain containing 127
mm9_v1_chr14_-_21271443_21271446	0.0129679	NHLH1,2.p2	AK029536|Ttc18|76670|tetratricopeptide repeat domain 18	BC138269|Ttc18|76670|tetratricopeptide repeat domain 18	BC145225|Ttc18|76670|tetratricopeptide repeat domain 18	BC145226|Ttc18|76670|tetratricopeptide repeat domain 18	NM_001163638|Ttc18|76670|tetratricopeptide repeat domain 18	NM_001163639|Ttc18|76670|tetratricopeptide repeat domain 18	NM_029698|Ttc18|76670|tetratricopeptide repeat domain 18
mm9_v1_chr11_-_79343891_79344047	0.0129593	NHLH1,2.p2	AK171332|Evi2a|14017|ecotropic viral integration site 2a	AK044098|Evi2a|14017|ecotropic viral integration site 2a	AK162958|Evi2a|14017|ecotropic viral integration site 2a	AK171594|Evi2a|14017|ecotropic viral integration site 2a	AK160302|Evi2a|14017|ecotropic viral integration site 2a	M34896|Evi2a|14017|ecotropic viral integration site 2a
mm9_v1_chr2_-_110203138_110203154	0.012879	NHLH1,2.p2	BC027250|Fibin|67606|fin bud initiation factor homolog (zebrafish)	AK003790|Fibin|67606|fin bud initiation factor homolog (zebrafish)	NM_026271|Fibin|67606|fin bud initiation factor homolog (zebrafish)
mm9_v1_chr5_+_136363769_136363791	0.0126959	NHLH1,2.p2	NM_013560|Hspb1|15507|heat shock protein 1
mm9_v1_chr3_-_137849636_137849676	0.0126949	NHLH1,2.p2	BC150693|4930579F01Rik|67741|RIKEN cDNA 4930579F01 gene	AK016318|4930579F01Rik|67741|RIKEN cDNA 4930579F01 gene	NM_001163385|4930579F01Rik|67741|RIKEN cDNA 4930579F01 gene	NM_001163386|4930579F01Rik|67741|RIKEN cDNA 4930579F01 gene
mm9_v1_chr15_-_48623520_48623540	0.0122918	NHLH1,2.p2	AK140264|Csmd3|239420|CUB and Sushi multiple domains 3	AK163122|Csmd3|239420|CUB and Sushi multiple domains 3	NM_001081391|Csmd3|239420|CUB and Sushi multiple domains 3
mm9_v1_chr1_-_64663716_64663821	0.0120815	NHLH1,2.p2	AK033578|Fam119a|67099|family with sequence similarity 119, member A	NM_025964|Fam119a|67099|family with sequence similarity 119, member A	AK009673|Fam119a|67099|family with sequence similarity 119, member A	AK009675|Fam119a|67099|family with sequence similarity 119, member A	AK009678|Fam119a|67099|family with sequence similarity 119, member A	AK009679|Fam119a|67099|family with sequence similarity 119, member A	AK009680|Fam119a|67099|family with sequence similarity 119, member A	AK009682|Fam119a|67099|family with sequence similarity 119, member A	AK011433|Fam119a|67099|family with sequence similarity 119, member A
mm9_v1_chr9_-_108166193_108166275	0.011908	NHLH1,2.p2	AK053886|Dag1|13138|dystroglycan 1	AK145048|Dag1|13138|dystroglycan 1	AK036174|Dag1|13138|dystroglycan 1
mm9_v1_chr5_-_110537170_110537204	0.0117778	NHLH1,2.p2	AK159462|Gtpbp6|107999|GTP binding protein 6 (putative)
mm9_v1_chr11_+_114530028_114530110	0.011672	NHLH1,2.p2	BC094258|Rpl38|67671|ribosomal protein L38	BC094644|Rpl38|67671|ribosomal protein L38	NM_001048058|Rpl38|67671|ribosomal protein L38	BC081447|Rpl38|67671|ribosomal protein L38
mm9_v1_chr4_-_118081793_118081882	0.0116679	NHLH1,2.p2	GU433214|Szt2|230676|seizure threshold 2	FJ998170|Szt2|230676|seizure threshold 2	NM_198170|Szt2|230676|seizure threshold 2
mm9_v1_chr6_-_113550646_113550708	0.0115922	NHLH1,2.p2	AK016461|4931417G12Rik|70979|RIKEN cDNA 4931417G12 gene	BC049660|4931417G12Rik|70979|RIKEN cDNA 4931417G12 gene	NM_027633|4931417G12Rik|70979|RIKEN cDNA 4931417G12 gene
mm9_v1_chr9_-_115152128_115152185	0.0113036	NHLH1,2.p2	
mm9_v1_chr9_-_106794234_106794259	0.0112654	NHLH1,2.p2	AB009291|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	AK165646|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	AK014338|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	BC038901|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor
mm9_v1_chr17_+_33766035_33766080	0.0111884	NHLH1,2.p2	NM_026712|Zfp414|328801|zinc finger protein 414	AK048362|Zfp414|328801|zinc finger protein 414	AK169869|Zfp414|328801|zinc finger protein 414	AK002706|Zfp414|328801|zinc finger protein 414	BC116933|Zfp414|328801|zinc finger protein 414	BC119044|Zfp414|328801|zinc finger protein 414	BC038913|Zfp414|328801|zinc finger protein 414
mm9_v1_chr2_+_34627729_34627749	0.011107	NHLH1,2.p2	AK151244|Hspa5|14828|heat shock protein 5	D78645|Hspa5|14828|heat shock protein 5
mm9_v1_chr6_-_124813720_124813826	0.0110017	NHLH1,2.p2	AK144543|Gpr162|14788|G protein-coupled receptor 162	AK158847|Gpr162|14788|G protein-coupled receptor 162	AK134941|Gpr162|14788|G protein-coupled receptor 162	BC016413|Gpr162|14788|G protein-coupled receptor 162
mm9_v1_chr18_-_53904193_53904270	0.0109941	NHLH1,2.p2	AK044952|Cep120|225523|centrosomal protein 120	BC053439|Cep120|225523|centrosomal protein 120	NM_178686|Cep120|225523|centrosomal protein 120	AK089236|Cep120|225523|centrosomal protein 120	AK089242|Cep120|225523|centrosomal protein 120	AK044808|Cep120|225523|centrosomal protein 120	AK079319|Cep120|225523|centrosomal protein 120	AK047594|Cep120|225523|centrosomal protein 120	AK038916|Cep120|225523|centrosomal protein 120
mm9_v1_chr13_+_73468441_73468488	0.0109856	NHLH1,2.p2	AK160778|Mrpl36|94066|mitochondrial ribosomal protein L36	BC009166|Mrpl36|94066|mitochondrial ribosomal protein L36	NM_053163|Mrpl36|94066|mitochondrial ribosomal protein L36	AK131597|Mrpl36|94066|mitochondrial ribosomal protein L36	AK131601|Mrpl36|94066|mitochondrial ribosomal protein L36	AK131604|Mrpl36|94066|mitochondrial ribosomal protein L36	AK075780|Mrpl36|94066|mitochondrial ribosomal protein L36	AB049655|Mrpl36|94066|mitochondrial ribosomal protein L36
mm9_v1_chrX_+_8380816_8380885	0.0108679	NHLH1,2.p2	AY244796|Ssxb5|387586|synovial sarcoma, X member B, breakpoint 5	NM_199319|Ssxb5|387586|synovial sarcoma, X member B, breakpoint 5	BC141493|Ssxb5|387586|synovial sarcoma, X member B, breakpoint 5	BC148774|Ssxb5|387586|synovial sarcoma, X member B, breakpoint 5
mm9_v1_chr6_+_38553293_38553312	0.01072	NHLH1,2.p2	AK138070|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)
mm9_v1_chr1_-_34496516_34496516	0.0107198	NHLH1,2.p2	BC019430|Ccdc115|69668|coiled-coil domain containing 115	NM_027159|Ccdc115|69668|coiled-coil domain containing 115
mm9_v1_chr7_+_28459677_28459679	0.0106783	NHLH1,2.p2	BC060708|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene	NM_198417|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene
mm9_v1_chr12_-_89420210_89420337	0.0102509	NHLH1,2.p2	BC094894|Gm10436|100039315|predicted gene 10436	AK139576|Gm10436|100039315|predicted gene 10436	NM_001105254|Gm10436|100039315|predicted gene 10436
mm9_v1_chr17_+_74794946_74794992	0.0100738	NHLH1,2.p2	BC068169|Slc30a6|210148|solute carrier family 30 (zinc transporter), member 6	AK160903|Slc30a6|210148|solute carrier family 30 (zinc transporter), member 6	AK082907|Slc30a6|210148|solute carrier family 30 (zinc transporter), member 6	NM_144798|Slc30a6|210148|solute carrier family 30 (zinc transporter), member 6	AK150342|Slc30a6|210148|solute carrier family 30 (zinc transporter), member 6	AK151120|Slc30a6|210148|solute carrier family 30 (zinc transporter), member 6	AK020581|Slc30a6|210148|solute carrier family 30 (zinc transporter), member 6	BC066162|Slc30a6|210148|solute carrier family 30 (zinc transporter), member 6
mm9_v1_chr19_-_43827386_43827505	0.0100396	NHLH1,2.p2	AK051792|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	BC021498|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	AK141631|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	BC011509|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	AK048099|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	NM_144874|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)
mm9_v1_chr14_-_31981804_31981826	0.0100102	NHLH1,2.p2	NM_138672|Stab1|192187|stabilin 1
mm9_v1_chr11_+_60526123_60526177	0.00972217	NHLH1,2.p2	BC029987|Llgl1|16897|lethal giant larvae homolog 1 (Drosophila)
mm9_v1_chr13_-_74487687_74487687	0.00968867	NHLH1,2.p2	AK034928|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	NM_023281|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
mm9_v1_chr7_-_148040227_148040484	0.00966803	NHLH1,2.p2	BC052402|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like	AK003184|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like
mm9_v1_chr15_-_3945704_3945774	0.00962725	NHLH1,2.p2	AK045350|AW549877|106064|expressed sequence AW549877	AK154940|AW549877|106064|expressed sequence AW549877	NM_145930|AW549877|106064|expressed sequence AW549877
mm9_v1_chr5_-_34517575_34517643	0.00957578	NHLH1,2.p2	
mm9_v1_chr5_+_140981590_140981602	0.00941722	NHLH1,2.p2	AK163588|Chst12|59031|carbohydrate sulfotransferase 12	AK170484|Chst12|59031|carbohydrate sulfotransferase 12	AK171208|Chst12|59031|carbohydrate sulfotransferase 12
mm9_v1_chr17_+_33775000_33775095	0.00852098	NHLH1,2.p2	NM_001002842|Pram1|378460|PML-RAR alpha-regulated adaptor molecule 1	AK169990|Pram1|378460|PML-RAR alpha-regulated adaptor molecule 1	AY665714|Pram1|378460|PML-RAR alpha-regulated adaptor molecule 1	BC141100|Pram1|378460|PML-RAR alpha-regulated adaptor molecule 1
mm9_v1_chr11_-_69499014_69499062	0.00851566	NHLH1,2.p2	BC069900|Tnfsf13|69583|tumor necrosis factor (ligand) superfamily, member 13	AK009514|Tnfsf13|69583|tumor necrosis factor (ligand) superfamily, member 13	NM_001159505|Tnfsf13|69583|tumor necrosis factor (ligand) superfamily, member 13	NM_023517|Tnfsf13|69583|tumor necrosis factor (ligand) superfamily, member 13	AK170351|Tnfsf13|69583|tumor necrosis factor (ligand) superfamily, member 13
mm9_v1_chr11_-_102152310_102152512	0.00826704	NHLH1,2.p2	AK218190|Atxn7l3|217218|ataxin 7-like 3	AK053165|Atxn7l3|217218|ataxin 7-like 3
mm9_v1_chr15_-_73455173_73455173	0.00797008	NHLH1,2.p2	AK133269|Slc45a4|106068|solute carrier family 45, member 4	NM_001033219|Slc45a4|106068|solute carrier family 45, member 4
mm9_v1_chr11_-_97637190_97637231	0.00796436	NHLH1,2.p2	AK005619|1700001P01Rik|72215|RIKEN cDNA 1700001P01 gene	BC048607|1700001P01Rik|72215|RIKEN cDNA 1700001P01 gene	NM_028156|1700001P01Rik|72215|RIKEN cDNA 1700001P01 gene
mm9_v1_chr2_+_164286735_164286813	0.00792037	NHLH1,2.p2	BC061084|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK032098|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	BC053943|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK017524|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
mm9_v1_chr8_-_106966697_106966807	0.00785485	NHLH1,2.p2	AK152157|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK140743|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK147899|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK161434|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK161494|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2
mm9_v1_chr14_-_70607443_70607553	0.0077512	NHLH1,2.p2	AF064806|Sorbs3|20410|sorbin and SH3 domain containing 3	NM_011366|Sorbs3|20410|sorbin and SH3 domain containing 3
mm9_v1_chr1_-_24107142_24107222	0.00766978	NHLH1,2.p2	AK149303|Fam135a|68187|family with sequence similarity 135, member A	AK165306|Fam135a|68187|family with sequence similarity 135, member A	NM_026604|Fam135a|68187|family with sequence similarity 135, member A
mm9_v1_chrX_-_34708836_34708836	0.00753436	NHLH1,2.p2	AK133120|Akap14|434756|A kinase (PRKA) anchor protein 14	BC147265|Akap14|434756|A kinase (PRKA) anchor protein 14	BC147494|Akap14|434756|A kinase (PRKA) anchor protein 14	NM_001033785|Akap14|434756|A kinase (PRKA) anchor protein 14
mm9_v1_chr4_+_118081908_118082012	0.0074331	NHLH1,2.p2	AK011080|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	NM_020000|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	NM_173719|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	AK147032|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	AK005422|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	AK148025|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	BC051683|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	AK008759|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	BC021870|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	AB041805|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)
mm9_v1_chr4_+_128964928_128964982	0.00717262	NHLH1,2.p2	AJ251641|Sync|68828|syncoilin	BC106855|Sync|68828|syncoilin	FJ752162|Sync|68828|syncoilin	FJ752163|Sync|68828|syncoilin	FJ752164|Sync|68828|syncoilin
mm9_v1_chr7_-_52870858_52870859	0.00705145	NHLH1,2.p2	BC049592|Fgf21|56636|fibroblast growth factor 21	AK007574|Fgf21|56636|fibroblast growth factor 21	NM_020013|Fgf21|56636|fibroblast growth factor 21
mm9_v1_chr9_-_108166059_108166072	0.00699462	NHLH1,2.p2	AK038702|Dag1|13138|dystroglycan 1	NM_010017|Dag1|13138|dystroglycan 1
mm9_v1_chr2_+_178165235_178165311	0.00698737	NHLH1,2.p2	AK132328|Cdh26|381409|cadherin-like 26	BC053928|Cdh26|381409|cadherin-like 26	NM_198656|Cdh26|381409|cadherin-like 26
mm9_v1_chr1_-_168168870_168168874	0.00678873	NHLH1,2.p2	AK077103|Mael|98558|maelstrom homolog (Drosophila)	AK165801|Mael|98558|maelstrom homolog (Drosophila)	BC050800|Mael|98558|maelstrom homolog (Drosophila)	NM_175296|Mael|98558|maelstrom homolog (Drosophila)
mm9_v1_chr2_-_6244125_6244167	0.00669806	NHLH1,2.p2	AK005972|1700014B07Rik|72248|RIKEN cDNA 1700014B07 gene
mm9_v1_chr9_-_21397188_21397310	0.00659732	NHLH1,2.p2	BC002282|Yipf2|74766|Yip1 domain family, member 2	NM_138303|Yipf2|74766|Yip1 domain family, member 2	BC003289|Yipf2|74766|Yip1 domain family, member 2	AK033705|Yipf2|74766|Yip1 domain family, member 2	AK133631|Yipf2|74766|Yip1 domain family, member 2	AK004959|Yipf2|74766|Yip1 domain family, member 2
mm9_v1_chr4_-_58924786_58924804	0.00644609	NHLH1,2.p2	AK038775|AI314180|230249|expressed sequence AI314180	AK043020|AI314180|230249|expressed sequence AI314180
mm9_v1_chr8_-_113426341_113426387	0.00626338	NHLH1,2.p2	AK140503|Fuk|234730|fucokinase	AK164340|Fuk|234730|fucokinase	AJ297482|Fuk|234730|fucokinase	AJ534942|Fuk|234730|fucokinase	AY223865|Fuk|234730|fucokinase	NM_172283|Fuk|234730|fucokinase	NM_181666|Fuk|234730|fucokinase	AK161763|Fuk|234730|fucokinase
mm9_v1_chr9_-_72887465_72887505	0.00605331	NHLH1,2.p2	D84436|Pigb|55981|phosphatidylinositol glycan anchor biosynthesis, class B	NM_018889|Pigb|55981|phosphatidylinositol glycan anchor biosynthesis, class B
mm9_v1_chr11_-_102178559_102178600	0.00596606	NHLH1,2.p2	AK158861|Ubtf|21429|upstream binding transcription factor, RNA polymerase I	NM_001044383|Ubtf|21429|upstream binding transcription factor, RNA polymerase I
mm9_v1_chr6_+_87040212_87040221	0.00589766	NHLH1,2.p2	AK013141|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1
mm9_v1_chr16_+_26581837_26581853	0.00587068	NHLH1,2.p2	AK039582|Il1rap|16180|interleukin 1 receptor accessory protein	AK136782|Il1rap|16180|interleukin 1 receptor accessory protein	AK033972|Il1rap|16180|interleukin 1 receptor accessory protein	AK045686|Il1rap|16180|interleukin 1 receptor accessory protein	AK149467|Il1rap|16180|interleukin 1 receptor accessory protein	BC021159|Il1rap|16180|interleukin 1 receptor accessory protein	X85999|Il1rap|16180|interleukin 1 receptor accessory protein
mm9_v1_chr8_+_97056910_97056982	0.00555259	NHLH1,2.p2	BC031801|Cpne2|234577|copine II	NM_153507|Cpne2|234577|copine II	AK160238|Cpne2|234577|copine II	AK086165|Cpne2|234577|copine II	BC022128|Cpne2|234577|copine II
mm9_v1_chr5_+_77403725_77403746	0.00554473	NHLH1,2.p2	AK133784|Srp72|66661|signal recognition particle 72	NM_025691|Srp72|66661|signal recognition particle 72	BC003434|Srp72|66661|signal recognition particle 72	AK138875|Srp72|66661|signal recognition particle 72	BC019196|Srp72|66661|signal recognition particle 72
mm9_v1_chr5_-_125870386_125870439	0.00543184	NHLH1,2.p2	NM_019639|Ubc|22190|ubiquitin C	AK004727|Ubc|22190|ubiquitin C
mm9_v1_chr2_+_26439383_26439424	0.00518491	NHLH1,2.p2	NM_198724|Egfl7|353156|EGF-like domain 7	NM_198725|Egfl7|353156|EGF-like domain 7	AK002601|Egfl7|353156|EGF-like domain 7	AY239290|Egfl7|353156|EGF-like domain 7	BC024610|Egfl7|353156|EGF-like domain 7
mm9_v1_chr1_+_182685912_182685968	0.00507631	NHLH1,2.p2	AK017899|5830405M20Rik|74749|RIKEN cDNA 5830405M20 gene
mm9_v1_chr5_-_145891052_145891100	0.0050325	NHLH1,2.p2	AK177019|Pdap1|231887|PDGFA associated protein 1
mm9_v1_chr4_-_122563074_122563173	0.00496814	NHLH1,2.p2	AK169652|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK144094|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK165565|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK171388|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK162629|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK137222|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK128889|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	L12367|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK158150|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK170901|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK156556|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK053351|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	NM_007598|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)
mm9_v1_chr9_-_108166100_108166104	0.00492683	NHLH1,2.p2	BC007150|Dag1|13138|dystroglycan 1
mm9_v1_chr16_+_23609986_23610176	0.00481823	NHLH1,2.p2	NM_023386|Rtp4|67775|receptor transporter protein 4	AK018021|Rtp4|67775|receptor transporter protein 4	AJ251364|Rtp4|67775|receptor transporter protein 4	AK007477|Rtp4|67775|receptor transporter protein 4	BC024872|Rtp4|67775|receptor transporter protein 4	AY562228|Rtp4|67775|receptor transporter protein 4
mm9_v1_chr1_-_192994532_192994569	0.00472536	NHLH1,2.p2	AK217100|Atf3|11910|activating transcription factor 3
mm9_v1_chr8_+_22274328_22274385	0.00466131	NHLH1,2.p2	NM_001177485|Gm15284|100038927|predicted gene 15284	AJ564869|Defa-rs2|13222|defensin, alpha, related sequence 2
mm9_v1_chr15_-_88784839_88784847	0.00449773	NHLH1,2.p2	AK030151|Ttll8|239591|tubulin tyrosine ligase-like family, member 8	AK029745|Ttll8|239591|tubulin tyrosine ligase-like family, member 8	NM_172818|Ttll8|239591|tubulin tyrosine ligase-like family, member 8
mm9_v1_chr13_-_33250219_33250219	0.00447506	NHLH1,2.p2	BC051664|Serpinb9c|20707|serine (or cysteine) peptidase inhibitor, clade B, member 9c	NM_011453|Serpinb9c|20707|serine (or cysteine) peptidase inhibitor, clade B, member 9c
mm9_v1_chr11_-_115560691_115560842	0.00430419	NHLH1,2.p2	AK077750|Grb2|14784|growth factor receptor bound protein 2	AK079087|Grb2|14784|growth factor receptor bound protein 2	AK153557|Grb2|14784|growth factor receptor bound protein 2
mm9_v1_chr10_+_62487259_62487259	0.00413629	NHLH1,2.p2	AK014198|Pbld2|67307|phenazine biosynthesis-like protein domain containing 2	NM_026085|Pbld2|67307|phenazine biosynthesis-like protein domain containing 2
mm9_v1_chr16_+_81200909_81200967	0.00407053	NHLH1,2.p2	NM_001113208|Ncam2|17968|neural cell adhesion molecule 2	NM_010954|Ncam2|17968|neural cell adhesion molecule 2
mm9_v1_chr10_+_111602731_111602731	0.00367582	NHLH1,2.p2	BC116659|Caps2|353025|calcyphosphine 2	NM_178278|Caps2|353025|calcyphosphine 2
mm9_v1_chr7_-_106855343_106855351	0.00363149	NHLH1,2.p2	AK087682|Slco2b1|101488|solute carrier organic anion transporter family, member 2b1	AK163542|Slco2b1|101488|solute carrier organic anion transporter family, member 2b1	AK132394|Slco2b1|101488|solute carrier organic anion transporter family, member 2b1
mm9_v1_chr5_-_21151348_21151451	0.00344865	NHLH1,2.p2	BC145291|Fbxl13|320118|F-box and leucine-rich repeat protein 13	BC145292|Fbxl13|320118|F-box and leucine-rich repeat protein 13	AK030172|Fbxl13|320118|F-box and leucine-rich repeat protein 13	AK029566|Fbxl13|320118|F-box and leucine-rich repeat protein 13	NM_177076|Fbxl13|320118|F-box and leucine-rich repeat protein 13
mm9_v1_chr9_+_3335472_3335500	0.003383	NHLH1,2.p2	AK020197|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	AK054267|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	AK081459|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	AK133489|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	AK041810|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	AK033352|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)
mm9_v1_chr7_-_134005318_134005413	0.00334352	NHLH1,2.p2	AK135531|Ino80e|233875|INO80 complex subunit E	BC025527|Ino80e|233875|INO80 complex subunit E	AK040862|Ino80e|233875|INO80 complex subunit E
mm9_v1_chr4_-_134409044_134409108	0.00333105	NHLH1,2.p2	AY364165|Tmem57|66146|transmembrane protein 57	BC054355|Tmem57|66146|transmembrane protein 57	BC010714|Tmem57|66146|transmembrane protein 57
mm9_v1_chr8_+_90642636_90642724	0.00331689	NHLH1,2.p2	NM_029074|Tmem188|382030|transmembrane protein 188	AK146578|Tmem188|382030|transmembrane protein 188	BC018498|Tmem188|382030|transmembrane protein 188	AK017198|Tmem188|382030|transmembrane protein 188	BC094385|Tmem188|382030|transmembrane protein 188	BC118981|Tmem188|382030|transmembrane protein 188	BC148291|Tmem188|382030|transmembrane protein 188
mm9_v1_chr8_+_32239179_32239274	0.00326714	NHLH1,2.p2	AK004356|Rnf122|68867|ring finger protein 122
mm9_v1_chr19_-_60950373_60950471	0.0031262	NHLH1,2.p2	AK002448|Prdx3|11757|peroxiredoxin 3	BC005626|Prdx3|11757|peroxiredoxin 3	M28723|Prdx3|11757|peroxiredoxin 3	NM_007452|Prdx3|11757|peroxiredoxin 3
mm9_v1_chr9_+_75289299_75289376	0.00306771	NHLH1,2.p2	BC082540|Leo1|235497|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	NM_001039522|Leo1|235497|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC083358|Leo1|235497|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK153933|Leo1|235497|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr8_+_22969372_22969372	0.00285388	NHLH1,2.p2	AJ437645|Defb10|246085|defensin beta 10	NM_139225|Defb10|246085|defensin beta 10
mm9_v1_chr11_+_115891682_115891695	0.00281829	NHLH1,2.p2	BC054452|Unk|217331|unkempt homolog (Drosophila)
mm9_v1_chr13_-_56583606_56583606	0.00274772	NHLH1,2.p2	NM_008373|Il9|16198|interleukin 9	X14045|Il9|16198|interleukin 9
mm9_v1_chrX_-_71638317_71638612	0.00272459	NHLH1,2.p2	BC011237|Fam3a|66294|family with sequence similarity 3, member A	AK007715|Fam3a|66294|family with sequence similarity 3, member A	NM_025473|Fam3a|66294|family with sequence similarity 3, member A	BC019752|Fam3a|66294|family with sequence similarity 3, member A	BC069871|Fam3a|66294|family with sequence similarity 3, member A
mm9_v1_chr4_+_135979438_135979444	0.00265976	NHLH1,2.p2	AK082016|Htr1d|15552|5-hydroxytryptamine (serotonin) receptor 1D	NM_008309|Htr1d|15552|5-hydroxytryptamine (serotonin) receptor 1D	BC103532|Htr1d|15552|5-hydroxytryptamine (serotonin) receptor 1D	BC103536|Htr1d|15552|5-hydroxytryptamine (serotonin) receptor 1D	BC103535|Htr1d|15552|5-hydroxytryptamine (serotonin) receptor 1D
mm9_v1_chr6_-_48791369_48791407	0.00259945	NHLH1,2.p2	AK156042|Tmem176b|65963|transmembrane protein 176B	NM_001164207|Tmem176b|65963|transmembrane protein 176B	NM_001164208|Tmem176b|65963|transmembrane protein 176B
mm9_v1_chr4_+_119310319_119310342	0.00249447	NHLH1,2.p2	AK075814|Guca2a|14915|guanylate cyclase activator 2a (guanylin)	BC012640|Guca2a|14915|guanylate cyclase activator 2a (guanylin)	M95175|Guca2a|14915|guanylate cyclase activator 2a (guanylin)	NM_008190|Guca2a|14915|guanylate cyclase activator 2a (guanylin)	L05516|Guca2a|14915|guanylate cyclase activator 2a (guanylin)
mm9_v1_chr11_-_54601093_54601128	0.00246887	NHLH1,2.p2	BC048935|Cdc42se2|72729|CDC42 small effector 2	AK080473|Cdc42se2|72729|CDC42 small effector 2	AK146313|Cdc42se2|72729|CDC42 small effector 2
mm9_v1_chr5_-_42099382_42099426	0.00232567	NHLH1,2.p2	AK159493|Rab28|100972|RAB28, member RAS oncogene family	BC004580|Rab28|100972|RAB28, member RAS oncogene family	NM_027295|Rab28|100972|RAB28, member RAS oncogene family	AK012286|Rab28|100972|RAB28, member RAS oncogene family
mm9_v1_chr16_+_90738780_90738808	0.00211174	NHLH1,2.p2	AY079153|Mrap|77037|melanocortin 2 receptor accessory protein	AY079154|Mrap|77037|melanocortin 2 receptor accessory protein
mm9_v1_chr17_-_37706393_37706395	0.00202548	NHLH1,2.p2	AK029968|Olfr112|258096|olfactory receptor 112	NM_001013575|Olfr112|258096|olfactory receptor 112	AK016338|Olfr112|258096|olfactory receptor 112
mm9_v1_chr2_-_163996824_163996848	0.00202488	NHLH1,2.p2	AF008573|Kcns1|16538|K+ voltage-gated channel, subfamily S, 1	NM_008435|Kcns1|16538|K+ voltage-gated channel, subfamily S, 1
mm9_v1_chr3_+_32409471_32409572	0.00198362	NHLH1,2.p2	AK078000|Zfp639|67778|zinc finger protein 639	NM_001161818|Zfp639|67778|zinc finger protein 639	AK049934|Zfp639|67778|zinc finger protein 639	AK007493|Zfp639|67778|zinc finger protein 639	AK076837|Zfp639|67778|zinc finger protein 639	AK076145|Zfp639|67778|zinc finger protein 639	NM_144519|Zfp639|67778|zinc finger protein 639
mm9_v1_chr12_+_120084801_120084801	0.00193786	NHLH1,2.p2	AK053093|Sp8|320145|trans-acting transcription factor 8	NM_177082|Sp8|320145|trans-acting transcription factor 8
mm9_v1_chr4_+_40669908_40669973	0.00162347	NHLH1,2.p2	NM_001164671|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	NM_001164672|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1
mm9_v1_chr7_+_125743753_125743788	0.00149867	NHLH1,2.p2	BC108382|Tmc5|74424|transmembrane channel-like gene family 5
mm9_v1_chr9_-_56994725_56994840	0.00149617	NHLH1,2.p2	AB079069|Neil1|72774|nei endonuclease VIII-like 1 (E. coli)	NM_028347|Neil1|72774|nei endonuclease VIII-like 1 (E. coli)
mm9_v1_chr6_-_142650737_142650793	0.00142095	NHLH1,2.p2	D86037|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	D86038|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	AF003531|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	U97066|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	NM_001044720|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	NM_011511|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	NM_021041|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	NM_021042|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
mm9_v1_chrX_+_93650774_93650774	0.00138254	NHLH1,2.p2	NM_001159628|Heph|15203|hephaestin	NM_010417|Heph|15203|hephaestin
mm9_v1_chr11_+_59761707_59761771	0.00137111	NHLH1,2.p2	NM_138675|Med9|192191|mediator of RNA polymerase II transcription, subunit 9 homolog (yeast)	AK147123|Med9|192191|mediator of RNA polymerase II transcription, subunit 9 homolog (yeast)	BC019367|Med9|192191|mediator of RNA polymerase II transcription, subunit 9 homolog (yeast)	AF467888|Med9|192191|mediator of RNA polymerase II transcription, subunit 9 homolog (yeast)
mm9_v1_chr4_+_128964854_128964874	0.00128007	NHLH1,2.p2	AK081983|Sync|68828|syncoilin	NM_023485|Sync|68828|syncoilin	AK160756|Sync|68828|syncoilin
mm9_v1_chr8_+_13060907_13061026	0.00113605	NHLH1,2.p2	AK008819|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein	NM_025834|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein	BC024104|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein	BC038045|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein	AK005011|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein
mm9_v1_chr11_+_54911540_54911679	0.00104281	NHLH1,2.p2	AK149642|Gm2a|14667|GM2 ganglioside activator protein	AK152256|Gm2a|14667|GM2 ganglioside activator protein	U09816|Gm2a|14667|GM2 ganglioside activator protein	BC004651|Gm2a|14667|GM2 ganglioside activator protein	NM_010299|Gm2a|14667|GM2 ganglioside activator protein	L19526|Gm2a|14667|GM2 ganglioside activator protein	CT010289|Gm2a|14667|GM2 ganglioside activator protein	AK179394|Gm2a|14667|GM2 ganglioside activator protein	AK181597|Gm2a|14667|GM2 ganglioside activator protein
mm9_v1_chr5_-_122497833_122497833	0.000942699	NHLH1,2.p2	BC065113|Cux2|13048|cut-like homeobox 2	NM_007804|Cux2|13048|cut-like homeobox 2
mm9_v1_chr4_+_43071852_43071944	0.000916438	NHLH1,2.p2	AK161056|Unc13b|22249|unc-13 homolog B (C. elegans)	NM_001081413|Unc13b|22249|unc-13 homolog B (C. elegans)	BC157967|Unc13b|22249|unc-13 homolog B (C. elegans)	BC158025|Unc13b|22249|unc-13 homolog B (C. elegans)	NM_021468|Unc13b|22249|unc-13 homolog B (C. elegans)
mm9_v1_chr7_-_134028184_134028216	0.000905126	NHLH1,2.p2	BC085152|Taok2|381921|TAO kinase 2	AK031190|Taok2|381921|TAO kinase 2
mm9_v1_chr1_+_145487825_145487990	0.000730514	NHLH1,2.p2	AK036141|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	NM_020025|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK034371|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK083168|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK080106|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	BC046322|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
mm9_v1_chr8_-_125728514_125728663	0.000706021	NHLH1,2.p2	AK181175|Chmp1a|234852|chromatin modifying protein 1A	AK196071|Chmp1a|234852|chromatin modifying protein 1A	AK205507|Chmp1a|234852|chromatin modifying protein 1A	AK216719|Chmp1a|234852|chromatin modifying protein 1A
mm9_v1_chr15_-_74813781_74813859	0.000698643	NHLH1,2.p2	AF232024|Ly6i|57248|lymphocyte antigen 6 complex, locus I	BC125350|Ly6i|57248|lymphocyte antigen 6 complex, locus I	BC132052|Ly6i|57248|lymphocyte antigen 6 complex, locus I	BC145087|Ly6i|57248|lymphocyte antigen 6 complex, locus I	NM_020498|Ly6i|57248|lymphocyte antigen 6 complex, locus I
mm9_v1_chr13_-_74487688_74487724	0.000685941	NHLH1,2.p2	AK153085|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
mm9_v1_chr2_+_26865431_26865598	0.00043911	NHLH1,2.p2	AK020041|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	AK034046|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	AK039867|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	AK083582|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	AK052562|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	NM_029862|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	AK038728|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	AK043562|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	AK040379|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	AK169470|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene
mm9_v1_chr10_-_117147722_117147744	0.000237146	NHLH1,2.p2	X58876|Mdm2|17246|transformed mouse 3T3 cell double minute 2	BC050902|Mdm2|17246|transformed mouse 3T3 cell double minute 2	AK004881|Mdm2|17246|transformed mouse 3T3 cell double minute 2	AK088638|Mdm2|17246|transformed mouse 3T3 cell double minute 2
mm9_v1_chr9_+_121669121_121669172	0.000197765	NHLH1,2.p2	NM_001166644|Zfp651|270210|zinc finger protein 651
