mm9_v1_chr19_-_44470218_44470225	11.3945	NKX2-3_NKX2-5.p2	AK163960|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr15_-_96861590_96861647	10.9305	NKX2-3_NKX2-5.p2	BC024072|Slc38a4|69354|solute carrier family 38, member 4	BC024123|Slc38a4|69354|solute carrier family 38, member 4	AB055004|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr11_+_52202137_52202376	9.12838	NKX2-3_NKX2-5.p2	AK217498|Vdac1|22333|voltage-dependent anion channel 1	AK210208|Vdac1|22333|voltage-dependent anion channel 1	AK215454|Vdac1|22333|voltage-dependent anion channel 1	AK207573|Vdac1|22333|voltage-dependent anion channel 1
mm9_v1_chr11_+_96212945_96213026	8.25777	NKX2-3_NKX2-5.p2	NM_134032|Hoxb2|103889|homeobox B2	BC138494|Hoxb2|103889|homeobox B2	BC138495|Hoxb2|103889|homeobox B2
mm9_v1_chr11_+_75578548_75578573	8.16343	NKX2-3_NKX2-5.p2	AK204716|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK199717|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr2_+_35159780_35159798	8.13798	NKX2-3_NKX2-5.p2	AK213866|Gsn|227753|gelsolin
mm9_v1_chr6_+_4484651_4484672	8.13178	NKX2-3_NKX2-5.p2	AK159120|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr2_+_125860377_125860409	7.89511	NKX2-3_NKX2-5.p2	AK037172|Fgf7|14178|fibroblast growth factor 7	NM_008008|Fgf7|14178|fibroblast growth factor 7
mm9_v1_chr19_-_44476302_44476309	7.83454	NKX2-3_NKX2-5.p2	AK135642|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr11_+_29607599_29607721	7.45318	NKX2-3_NKX2-5.p2	AB073672|Rtn4|68585|reticulon 4
mm9_v1_chr1_+_45368443_45368526	7.28839	NKX2-3_NKX2-5.p2	AK220558|Col3a1|12825|collagen, type III, alpha 1	AK013329|Col3a1|12825|collagen, type III, alpha 1	AK041115|Col3a1|12825|collagen, type III, alpha 1	AK048546|Col3a1|12825|collagen, type III, alpha 1	AK157762|Col3a1|12825|collagen, type III, alpha 1	AK159763|Col3a1|12825|collagen, type III, alpha 1	AK159920|Col3a1|12825|collagen, type III, alpha 1	AK160048|Col3a1|12825|collagen, type III, alpha 1	AK160107|Col3a1|12825|collagen, type III, alpha 1	AK160818|Col3a1|12825|collagen, type III, alpha 1	AK147542|Col3a1|12825|collagen, type III, alpha 1	AK159985|Col3a1|12825|collagen, type III, alpha 1	AK029212|Col3a1|12825|collagen, type III, alpha 1	BC052398|Col3a1|12825|collagen, type III, alpha 1	BC043089|Col3a1|12825|collagen, type III, alpha 1	AK031544|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr3_+_54165028_54165059	7.21121	NKX2-3_NKX2-5.p2	NM_001198765|Postn|50706|periostin, osteoblast specific factor	NM_001198766|Postn|50706|periostin, osteoblast specific factor	NM_015784|Postn|50706|periostin, osteoblast specific factor	AK030756|Postn|50706|periostin, osteoblast specific factor	AK154049|Postn|50706|periostin, osteoblast specific factor	D13664|Postn|50706|periostin, osteoblast specific factor	BC007141|Postn|50706|periostin, osteoblast specific factor	AY651928|Postn|50706|periostin, osteoblast specific factor	BC031449|Postn|50706|periostin, osteoblast specific factor
mm9_v1_chr2_+_125860507_125860527	7.05457	NKX2-3_NKX2-5.p2	AK086639|Fgf7|14178|fibroblast growth factor 7	BC052847|Fgf7|14178|fibroblast growth factor 7
mm9_v1_chr11_+_67013553_67013615	6.92877	NKX2-3_NKX2-5.p2	DQ021871|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult	AK041122|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult	AY963800|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult	BC108329|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult	NM_030679|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult
mm9_v1_chr11_+_66984528_66984720	6.79878	NKX2-3_NKX2-5.p2	DQ020160|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	NM_001039545|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	AK036437|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	AY963799|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	DQ020161|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	DQ020162|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	BC008538|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult
mm9_v1_chr7_-_56103389_56103404	6.50903	NKX2-3_NKX2-5.p2	Z49883|Csrp3|13009|cysteine and glycine-rich protein 3	AK011624|Csrp3|13009|cysteine and glycine-rich protein 3	AK003120|Csrp3|13009|cysteine and glycine-rich protein 3
mm9_v1_chr7_-_56103405_56103420	6.4696	NKX2-3_NKX2-5.p2	NM_001198841|Csrp3|13009|cysteine and glycine-rich protein 3
mm9_v1_chr6_+_83290548_83290557	6.45749	NKX2-3_NKX2-5.p2	AK152254|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)
mm9_v1_chr1_-_55135054_55135143	6.38275	NKX2-3_NKX2-5.p2	AK206123|Hspd1|15510|heat shock protein 1 (chaperonin)	AK180922|Hspd1|15510|heat shock protein 1 (chaperonin)	AK208190|Hspd1|15510|heat shock protein 1 (chaperonin)	AK213559|Hspd1|15510|heat shock protein 1 (chaperonin)
mm9_v1_chr6_+_4483741_4483796	6.24844	NKX2-3_NKX2-5.p2	BC012438|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr15_-_56526052_56526100	6.16098	NKX2-3_NKX2-5.p2	U52524|Has2|15117|hyaluronan synthase 2	BC080281|Has2|15117|hyaluronan synthase 2	U69695|Has2|15117|hyaluronan synthase 2	AK045020|Has2|15117|hyaluronan synthase 2	AK079729|Has2|15117|hyaluronan synthase 2	NM_008216|Has2|15117|hyaluronan synthase 2
mm9_v1_chr1_+_45368382_45368399	6.02633	NKX2-3_NKX2-5.p2	NM_009930|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr17_-_48571942_48571962	5.78723	NKX2-3_NKX2-5.p2	AK009047|Apobec2|11811|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2	BC027530|Apobec2|11811|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm9_v1_chr17_-_48572043_48572062	5.78281	NKX2-3_NKX2-5.p2	AF161699|Apobec2|11811|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2	NM_009694|Apobec2|11811|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm9_v1_chr10_-_85474581_85474639	5.69476	NKX2-3_NKX2-5.p2	BC112376|Bpil2|270757|bactericidal/permeability-increasing protein-like 2	AK028764|Bpil2|270757|bactericidal/permeability-increasing protein-like 2	NM_177772|Bpil2|270757|bactericidal/permeability-increasing protein-like 2	AK132518|Bpil2|270757|bactericidal/permeability-increasing protein-like 2
mm9_v1_chr1_-_165243777_165243829	5.57033	NKX2-3_NKX2-5.p2	NM_001025570|Prrx1|18933|paired related homeobox 1	NM_011127|Prrx1|18933|paired related homeobox 1	NM_175686|Prrx1|18933|paired related homeobox 1	U03873|Prrx1|18933|paired related homeobox 1	AK084387|Prrx1|18933|paired related homeobox 1	AK029347|Prrx1|18933|paired related homeobox 1
mm9_v1_chr13_+_49639847_49640001	5.4197	NKX2-3_NKX2-5.p2	AK014504|Aspn|66695|asporin	AK021386|Aspn|66695|asporin	AK085920|Aspn|66695|asporin	BC034888|Aspn|66695|asporin	BC145904|Aspn|66695|asporin	BC145930|Aspn|66695|asporin
mm9_v1_chrX_+_154137114_154137143	5.20769	NKX2-3_NKX2-5.p2	BC051197|Smpx|66106|small muscle protein, X-linked	BC061051|Smpx|66106|small muscle protein, X-linked
mm9_v1_chr9_-_103256690_103256767	5.19763	NKX2-3_NKX2-5.p2	BC030486|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC064103|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3
mm9_v1_chr11_-_119971500_119971623	5.10739	NKX2-3_NKX2-5.p2	AK195379|Slc38a10|72055|solute carrier family 38, member 10	AK176940|Slc38a10|72055|solute carrier family 38, member 10	AK182790|Slc38a10|72055|solute carrier family 38, member 10	BC055017|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr8_+_131238027_131238047	4.83761	NKX2-3_NKX2-5.p2	AK141253|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chr6_+_112223751_112223811	4.80543	NKX2-3_NKX2-5.p2	AK075847|Lmcd1|30937|LIM and cysteine-rich domains 1	NM_144799|Lmcd1|30937|LIM and cysteine-rich domains 1	AK159946|Lmcd1|30937|LIM and cysteine-rich domains 1	BC019124|Lmcd1|30937|LIM and cysteine-rich domains 1
mm9_v1_chr10_-_116786025_116786098	4.73705	NKX2-3_NKX2-5.p2	AK018657|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chr3_+_67696141_67696177	4.64672	NKX2-3_NKX2-5.p2	AK052136|Iqcj|208426|IQ motif containing J	NM_001113419|Iqcj-schip1|100505386|IQ motif containing J-schwannomin interacting protein 1 read-through transcript	NM_177585|Iqcj|208426|IQ motif containing J	BC107305|Iqcj|208426|IQ motif containing J	BC107306|Iqcj|208426|IQ motif containing J
mm9_v1_chr19_-_55177562_55177604	4.5868	NKX2-3_NKX2-5.p2	AK047295|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial	AK173202|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial
mm9_v1_chr13_+_83643032_83643032	4.50513	NKX2-3_NKX2-5.p2	NM_001170537|Mef2c|17260|myocyte enhancer factor 2C	NM_025282|Mef2c|17260|myocyte enhancer factor 2C
mm9_v1_chr9_+_92502076_92502169	4.47385	NKX2-3_NKX2-5.p2	
mm9_v1_chr3_+_159502646_159502709	4.44859	NKX2-3_NKX2-5.p2	BC075615|Wls|68151|wntless homolog (Drosophila)	NM_026582|Wls|68151|wntless homolog (Drosophila)	AK029053|Wls|68151|wntless homolog (Drosophila)	AK044810|Wls|68151|wntless homolog (Drosophila)	AK019886|Wls|68151|wntless homolog (Drosophila)	AK029104|Wls|68151|wntless homolog (Drosophila)	AK029315|Wls|68151|wntless homolog (Drosophila)	AK031444|Wls|68151|wntless homolog (Drosophila)	AK049842|Wls|68151|wntless homolog (Drosophila)	AK128912|Wls|68151|wntless homolog (Drosophila)	AK159207|Wls|68151|wntless homolog (Drosophila)	AK159977|Wls|68151|wntless homolog (Drosophila)	AK077407|Wls|68151|wntless homolog (Drosophila)
mm9_v1_chr9_+_51855254_51855279	4.41755	NKX2-3_NKX2-5.p2	NM_001104616|Rdx|19684|radixin	AK162204|Rdx|19684|radixin
mm9_v1_chr16_+_45094383_45094406	4.35349	NKX2-3_NKX2-5.p2	BC058751|Ccdc80|67896|coiled-coil domain containing 80
mm9_v1_chr5_+_104868321_104868417	4.31059	NKX2-3_NKX2-5.p2	BC014284|Spp1|20750|secreted phosphoprotein 1
mm9_v1_chr19_+_10271150_10271263	4.30199	NKX2-3_NKX2-5.p2	AK191356|Fads1|76267|fatty acid desaturase 1	AK199659|Fads1|76267|fatty acid desaturase 1
mm9_v1_chr2_+_74707394_74707441	4.28459	NKX2-3_NKX2-5.p2	AK207939|Mtx2|53375|metaxin 2	AK212612|Mtx2|53375|metaxin 2	AK216047|Mtx2|53375|metaxin 2
mm9_v1_chr17_-_14831058_14831092	4.27505	NKX2-3_NKX2-5.p2	BC053702|Thbs2|21826|thrombospondin 2
mm9_v1_chrX_+_34337066_34337260	4.27263	NKX2-3_NKX2-5.p2	EF437333|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr6_-_99216494_99216530	4.01653	NKX2-3_NKX2-5.p2	BC064764|Foxp1|108655|forkhead box P1	AK171994|Foxp1|108655|forkhead box P1	BC065386|Foxp1|108655|forkhead box P1	NM_001197321|Foxp1|108655|forkhead box P1	AK040800|Foxp1|108655|forkhead box P1
mm9_v1_chr13_-_102453449_102453477	3.94371	NKX2-3_NKX2-5.p2	AK138868|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	AK049798|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chr9_-_66880619_66880631	3.89153	NKX2-3_NKX2-5.p2	AK190148|Tpm1|22003|tropomyosin 1, alpha	AK083087|Tpm1|22003|tropomyosin 1, alpha
mm9_v1_chr11_+_29618696_29618843	3.86824	NKX2-3_NKX2-5.p2	AF326337|Rtn4|68585|reticulon 4
mm9_v1_chr9_+_108239210_108239322	3.86449	NKX2-3_NKX2-5.p2	AK177758|Rhoa|11848|ras homolog gene family, member A
mm9_v1_chr13_+_49639799_49639811	3.84626	NKX2-3_NKX2-5.p2	NM_001172481|Aspn|66695|asporin	NM_025711|Aspn|66695|asporin
mm9_v1_chrX_-_156560678_156560850	3.84044	NKX2-3_NKX2-5.p2	AL355693|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1
mm9_v1_chrX_+_154137049_154137065	3.76581	NKX2-3_NKX2-5.p2	AJ245772|Smpx|66106|small muscle protein, X-linked	NM_025357|Smpx|66106|small muscle protein, X-linked	AK009857|Smpx|66106|small muscle protein, X-linked	AK010172|Smpx|66106|small muscle protein, X-linked	AY026524|Smpx|66106|small muscle protein, X-linked	AK003105|Smpx|66106|small muscle protein, X-linked	AF364070|Smpx|66106|small muscle protein, X-linked
mm9_v1_chr5_-_122907269_122907331	3.57425	NKX2-3_NKX2-5.p2	AK195483|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK198267|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK202908|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK209825|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	BC022584|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr2_+_132673469_132673469	3.45332	NKX2-3_NKX2-5.p2	AK016165|Crls1|66586|cardiolipin synthase 1	NM_025646|Crls1|66586|cardiolipin synthase 1
mm9_v1_chr17_-_14831095_14831102	3.44785	NKX2-3_NKX2-5.p2	L07803|Thbs2|21826|thrombospondin 2	M64866|Thbs2|21826|thrombospondin 2	AK132508|Thbs2|21826|thrombospondin 2
mm9_v1_chr9_+_54758322_54758381	3.43885	NKX2-3_NKX2-5.p2	AK038058|Ireb2|64602|iron responsive element binding protein 2
mm9_v1_chr6_+_54839147_54839273	3.41701	NKX2-3_NKX2-5.p2	AK078666|Znrf2|387524|zinc and ring finger 2
mm9_v1_chr2_+_162760505_162760606	3.40652	NKX2-3_NKX2-5.p2	
mm9_v1_chr2_-_84490827_84490896	3.37961	NKX2-3_NKX2-5.p2	BC054544|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	BC043108|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK161790|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK164485|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK168453|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085448|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085449|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085450|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_007615|Ctnnd1|12388|catenin (cadherin associated protein), delta 1
mm9_v1_chr4_+_140256449_140256455	3.34688	NKX2-3_NKX2-5.p2	AK076046|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr2_+_170336930_170336945	3.33296	NKX2-3_NKX2-5.p2	AK007940|Pfdn4|109054|prefoldin 4	BC048510|Pfdn4|109054|prefoldin 4
mm9_v1_chr6_-_87793898_87794088	3.31614	NKX2-3_NKX2-5.p2	AK207643|Cnbp|12785|cellular nucleic acid binding protein	AK188144|Cnbp|12785|cellular nucleic acid binding protein
mm9_v1_chr2_+_174171525_174171529	3.22501	NKX2-3_NKX2-5.p2	AK187312|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK215851|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr11_-_75114563_75114872	3.18255	NKX2-3_NKX2-5.p2	AK206421|Rpa1|68275|replication protein A1	AK206963|Rpa1|68275|replication protein A1	AK206973|Rpa1|68275|replication protein A1	AK214358|Rpa1|68275|replication protein A1	AK214387|Rpa1|68275|replication protein A1	AK216329|Rpa1|68275|replication protein A1	AK216964|Rpa1|68275|replication protein A1	AK217322|Rpa1|68275|replication protein A1	AK218731|Rpa1|68275|replication protein A1	AK218266|Rpa1|68275|replication protein A1	AK211282|Rpa1|68275|replication protein A1
mm9_v1_chr1_-_165243608_165243611	3.17586	NKX2-3_NKX2-5.p2	AK089006|Prrx1|18933|paired related homeobox 1
mm9_v1_chr6_+_4490515_4490528	3.16621	NKX2-3_NKX2-5.p2	AK003150|Col1a2|12843|collagen, type I, alpha 2	BC023203|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr3_+_68376289_68376313	3.16114	NKX2-3_NKX2-5.p2	NM_013928|Schip1|30953|schwannomin interacting protein 1
mm9_v1_chr5_-_89886732_89886828	3.15488	NKX2-3_NKX2-5.p2	M55413|Gc|14473|group specific component	AK010965|Gc|14473|group specific component	BC010762|Gc|14473|group specific component	BC051395|Gc|14473|group specific component	NM_008096|Gc|14473|group specific component
mm9_v1_chr11_+_29618531_29618569	3.10072	NKX2-3_NKX2-5.p2	NM_024226|Rtn4|68585|reticulon 4	AY102283|Rtn4|68585|reticulon 4
mm9_v1_chr11_-_86331141_86331142	3.09538	NKX2-3_NKX2-5.p2	AK012045|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1
mm9_v1_chr10_-_117252126_117252166	3.08701	NKX2-3_NKX2-5.p2	
mm9_v1_chr2_+_34631438_34631582	3.08236	NKX2-3_NKX2-5.p2	AK218616|Hspa5|14828|heat shock protein 5	AK186478|Hspa5|14828|heat shock protein 5	AK192310|Hspa5|14828|heat shock protein 5
mm9_v1_chr3_+_79690856_79690884	3.08132	NKX2-3_NKX2-5.p2	AK052367|Fam198b|68659|family with sequence similarity 198, member B
mm9_v1_chr3_+_68376319_68376428	2.98971	NKX2-3_NKX2-5.p2	BC060529|Schip1|30953|schwannomin interacting protein 1	AK021361|Schip1|30953|schwannomin interacting protein 1
mm9_v1_chr1_+_40082070_40082114	2.98487	NKX2-3_NKX2-5.p2	AK159799|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chr1_+_174051459_174051484	2.94984	NKX2-3_NKX2-5.p2	AK189379|Copa|12847|coatomer protein complex subunit alpha	AK191029|Copa|12847|coatomer protein complex subunit alpha	AK193412|Copa|12847|coatomer protein complex subunit alpha	AK199738|Copa|12847|coatomer protein complex subunit alpha	AK194620|Copa|12847|coatomer protein complex subunit alpha
mm9_v1_chr12_+_39510297_39510297	2.9256	NKX2-3_NKX2-5.p2	AK032224|Etv1|14009|ets variant gene 1	NM_001163154|Etv1|14009|ets variant gene 1
mm9_v1_chr1_-_180259336_180259529	2.90277	NKX2-3_NKX2-5.p2	AK049375|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK080656|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr16_-_19706367_19706382	2.88563	NKX2-3_NKX2-5.p2	AJ510130|Lamp3|239739|lysosomal-associated membrane protein 3
mm9_v1_chr4_+_57907032_57907040	2.88128	NKX2-3_NKX2-5.p2	AK086796|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr6_-_52176102_52176188	2.85597	NKX2-3_NKX2-5.p2	AB221551|Hoxa9|15405|homeobox A9	BC055059|Hoxa9|15405|homeobox A9
mm9_v1_chr8_-_37631772_37631789	2.84962	NKX2-3_NKX2-5.p2	BC048730|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr13_-_74832039_74832154	2.82411	NKX2-3_NKX2-5.p2	AK037098|Cast|12380|calpastatin
mm9_v1_chr8_-_71601126_71601131	2.8093	NKX2-3_NKX2-5.p2	AK076433|Slc18a1|110877|solute carrier family 18 (vesicular monoamine), member 1	AK144034|Slc18a1|110877|solute carrier family 18 (vesicular monoamine), member 1
mm9_v1_chr1_+_40082201_40082235	2.7842	NKX2-3_NKX2-5.p2	AK020498|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4	AK167747|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4	AK004047|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chr8_-_64381465_64381486	2.77176	NKX2-3_NKX2-5.p2	AK052489|Palld|72333|palladin, cytoskeletal associated protein	NM_001081390|Palld|72333|palladin, cytoskeletal associated protein
mm9_v1_chr15_-_81191176_81191243	2.76875	NKX2-3_NKX2-5.p2	BC011292|Slc25a17|20524|solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	AK003672|Slc25a17|20524|solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	AJ006341|Slc25a17|20524|solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	AK002388|Slc25a17|20524|solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	NM_011399|Slc25a17|20524|solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	BC008571|Slc25a17|20524|solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17
mm9_v1_chrX_+_132424640_132424733	2.75027	NKX2-3_NKX2-5.p2	AK214737|Bhlhb9|70237|basic helix-loop-helix domain containing, class B9
mm9_v1_chr2_-_84490666_84490763	2.73751	NKX2-3_NKX2-5.p2	NM_001085453|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	BC046589|Ctnnd1|12388|catenin (cadherin associated protein), delta 1
mm9_v1_chr11_-_116712559_116712636	2.70593	NKX2-3_NKX2-5.p2	AF250133|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr1_+_40496493_40496633	2.69728	NKX2-3_NKX2-5.p2	NM_010743|Il1rl1|17082|interleukin 1 receptor-like 1	AK033417|Il1rl1|17082|interleukin 1 receptor-like 1	AK145118|Il1rl1|17082|interleukin 1 receptor-like 1	Y07519|Il1rl1|17082|interleukin 1 receptor-like 1	M24843|Il1rl1|17082|interleukin 1 receptor-like 1
mm9_v1_chr18_+_37834003_37834149	2.67332	NKX2-3_NKX2-5.p2	AY013797|Pcdhga3|93711|protocadherin gamma subfamily A, 3
mm9_v1_chr6_+_145882641_145882808	2.67306	NKX2-3_NKX2-5.p2	AK162864|Sspn|16651|sarcospan	AK163041|Sspn|16651|sarcospan	AK164430|Sspn|16651|sarcospan	BC021484|Sspn|16651|sarcospan	NM_010656|Sspn|16651|sarcospan	U02487|Sspn|16651|sarcospan	AK148179|Sspn|16651|sarcospan	AK164529|Sspn|16651|sarcospan
mm9_v1_chr16_-_11220854_11220973	2.66108	NKX2-3_NKX2-5.p2	AK218484|Gspt1|14852|G1 to S phase transition 1
mm9_v1_chr7_+_31548774_31548942	2.63759	NKX2-3_NKX2-5.p2	AK081753|Dmkn|73712|dermokine	NM_001166173|Dmkn|73712|dermokine	NM_001166174|Dmkn|73712|dermokine	NM_172899|Dmkn|73712|dermokine	BC064724|Dmkn|73712|dermokine	AY444557|Dmkn|73712|dermokine	AY622963|Dmkn|73712|dermokine
mm9_v1_chr5_+_35341726_35341726	2.57466	NKX2-3_NKX2-5.p2	AK014569|Rgs12|71729|regulator of G-protein signaling 12	AK161129|Rgs12|71729|regulator of G-protein signaling 12	NM_001163512|Rgs12|71729|regulator of G-protein signaling 12
mm9_v1_chr18_+_38476622_38476661	2.5734	NKX2-3_NKX2-5.p2	
mm9_v1_chr7_+_134356373_134356383	2.56353	NKX2-3_NKX2-5.p2	U77943|Mylpf|17907|myosin light chain, phosphorylatable, fast skeletal muscle
mm9_v1_chr2_+_13501725_13501846	2.54558	NKX2-3_NKX2-5.p2	AK205443|Vim|22352|vimentin
mm9_v1_chr13_+_40955500_40955723	2.51304	NKX2-3_NKX2-5.p2	AK077598|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	NM_023887|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK156328|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AY435148|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm9_v1_chrX_-_35774388_35774405	2.51156	NKX2-3_NKX2-5.p2	AK080234|Lamp2|16784|lysosomal-associated membrane protein 2
mm9_v1_chr10_+_87323855_87324094	2.49773	NKX2-3_NKX2-5.p2	NM_001111274|Igf1|16000|insulin-like growth factor 1	NM_001111276|Igf1|16000|insulin-like growth factor 1	NM_184052|Igf1|16000|insulin-like growth factor 1	X04480|Igf1|16000|insulin-like growth factor 1	X04482|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr5_-_137548123_137548145	2.49344	NKX2-3_NKX2-5.p2	BC054091|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	M33960|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	AK040662|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	NM_008871|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm9_v1_chr5_-_114881393_114881398	2.44981	NKX2-3_NKX2-5.p2	
mm9_v1_chr6_-_136890189_136890259	2.41533	NKX2-3_NKX2-5.p2	BC031763|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta	L07918|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta	AK169733|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta	AK002516|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta	NM_007486|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta
mm9_v1_chrX_+_130385546_130385673	2.41094	NKX2-3_NKX2-5.p2	BC049944|Tnmd|64103|tenomodulin	NM_022322|Tnmd|64103|tenomodulin	AF191768|Tnmd|64103|tenomodulin	AK003748|Tnmd|64103|tenomodulin	AF219993|Tnmd|64103|tenomodulin
mm9_v1_chr19_-_47766512_47766583	2.3724	NKX2-3_NKX2-5.p2	BC125031|Col17a1|12821|collagen, type XVII, alpha 1	BC125032|Col17a1|12821|collagen, type XVII, alpha 1	NM_007732|Col17a1|12821|collagen, type XVII, alpha 1	L08407|Col17a1|12821|collagen, type XVII, alpha 1
mm9_v1_chr6_-_72383494_72383569	2.36344	NKX2-3_NKX2-5.p2	AK199984|Mat2a|232087|methionine adenosyltransferase II, alpha	AK205713|Mat2a|232087|methionine adenosyltransferase II, alpha	AK209635|Mat2a|232087|methionine adenosyltransferase II, alpha	AK215987|Mat2a|232087|methionine adenosyltransferase II, alpha
mm9_v1_chr10_-_88067758_88067896	2.34908	NKX2-3_NKX2-5.p2	BC062158|Mybpc1|109272|myosin binding protein C, slow-type	AK132188|Mybpc1|109272|myosin binding protein C, slow-type	NM_175418|Mybpc1|109272|myosin binding protein C, slow-type
mm9_v1_chr16_-_23520662_23520727	2.3326	NKX2-3_NKX2-5.p2	BC131637|Masp1|17174|mannan-binding lectin serine peptidase 1	BC131638|Masp1|17174|mannan-binding lectin serine peptidase 1	NM_008555|Masp1|17174|mannan-binding lectin serine peptidase 1	AK032944|Masp1|17174|mannan-binding lectin serine peptidase 1	AB049755|Masp1|17174|mannan-binding lectin serine peptidase 1	D16492|Masp1|17174|mannan-binding lectin serine peptidase 1	AK043055|Masp1|17174|mannan-binding lectin serine peptidase 1	AK031598|Masp1|17174|mannan-binding lectin serine peptidase 1
mm9_v1_chr9_+_92502908_92503003	2.32903	NKX2-3_NKX2-5.p2	AK218100|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2
mm9_v1_chr10_+_56097078_56097350	2.32645	NKX2-3_NKX2-5.p2	AY427554|Gja1|14609|gap junction protein, alpha 1	AY427555|Gja1|14609|gap junction protein, alpha 1	NM_010288|Gja1|14609|gap junction protein, alpha 1	M63801|Gja1|14609|gap junction protein, alpha 1	AK011459|Gja1|14609|gap junction protein, alpha 1	AK036979|Gja1|14609|gap junction protein, alpha 1	AK145692|Gja1|14609|gap junction protein, alpha 1	AK161997|Gja1|14609|gap junction protein, alpha 1	AK171955|Gja1|14609|gap junction protein, alpha 1	AY427560|Gja1|14609|gap junction protein, alpha 1	BC006894|Gja1|14609|gap junction protein, alpha 1	BC055375|Gja1|14609|gap junction protein, alpha 1	AK029291|Gja1|14609|gap junction protein, alpha 1	AK165986|Gja1|14609|gap junction protein, alpha 1	X61576|Gja1|14609|gap junction protein, alpha 1	AY427556|Gja1|14609|gap junction protein, alpha 1	AY427557|Gja1|14609|gap junction protein, alpha 1	AY427558|Gja1|14609|gap junction protein, alpha 1
mm9_v1_chr5_-_100391613_100391631	2.32222	NKX2-3_NKX2-5.p2	AK012230|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr2_+_138104219_138104260	2.30637	NKX2-3_NKX2-5.p2	AB093275|Btbd3|228662|BTB (POZ) domain containing 3	NM_145534|Btbd3|228662|BTB (POZ) domain containing 3	BC018174|Btbd3|228662|BTB (POZ) domain containing 3
mm9_v1_chr4_+_48572811_48572818	2.27186	NKX2-3_NKX2-5.p2	BC028651|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene
mm9_v1_chr2_+_34631709_34631818	2.25706	NKX2-3_NKX2-5.p2	AK208906|Hspa5|14828|heat shock protein 5
mm9_v1_chr9_+_5345475_5345506	2.25511	NKX2-3_NKX2-5.p2	AK077256|Casp12|12364|caspase 12	AK080045|Casp12|12364|caspase 12	NM_009808|Casp12|12364|caspase 12	AK046681|Casp12|12364|caspase 12	BC028979|Casp12|12364|caspase 12	AK161525|Casp12|12364|caspase 12	AK053407|Casp12|12364|caspase 12	AK030309|Casp12|12364|caspase 12	AY675223|Casp12|12364|caspase 12	AY675224|Casp12|12364|caspase 12
mm9_v1_chr2_+_174171943_174171964	2.22775	NKX2-3_NKX2-5.p2	
mm9_v1_chr15_-_22644738_22644738	2.22707	NKX2-3_NKX2-5.p2	BC157911|Gm5803|545091|predicted gene 5803	BC172092|Gm5803|545091|predicted gene 5803	NM_001165971|Gm5803|545091|predicted gene 5803
mm9_v1_chr16_-_19706392_19706422	2.22519	NKX2-3_NKX2-5.p2	AK028039|Lamp3|239739|lysosomal-associated membrane protein 3	AK033379|Lamp3|239739|lysosomal-associated membrane protein 3	AK086898|Lamp3|239739|lysosomal-associated membrane protein 3	AK164915|Lamp3|239739|lysosomal-associated membrane protein 3
mm9_v1_chr5_-_122907002_122907003	2.21859	NKX2-3_NKX2-5.p2	AK134659|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr5_-_136384495_136384514	2.18222	NKX2-3_NKX2-5.p2	
mm9_v1_chr13_+_16106279_16106315	2.16784	NKX2-3_NKX2-5.p2	NM_008380|Inhba|16323|inhibin beta-A	X69619|Inhba|16323|inhibin beta-A	BC053527|Inhba|16323|inhibin beta-A
mm9_v1_chr3_+_123008796_123008820	2.14789	NKX2-3_NKX2-5.p2	BC030852|Sec24d|69608|Sec24 related gene family, member D (S. cerevisiae)
mm9_v1_chr5_-_122906470_122906515	2.13624	NKX2-3_NKX2-5.p2	AK081191|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr16_+_56477956_56478012	2.13606	NKX2-3_NKX2-5.p2	AK086582|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_001014399|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_001014422|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_001014423|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_001014424|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_178790|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AK041192|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AK043879|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AK051214|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	BC145388|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	BC150763|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190339|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190340|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190341|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190342|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190343|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein
mm9_v1_chr14_+_102237708_102237728	2.11812	NKX2-3_NKX2-5.p2	BC082553|Lmo7|380928|LIM domain only 7
mm9_v1_chr12_+_33535650_33535652	2.1168	NKX2-3_NKX2-5.p2	AK004117|Nampt|59027|nicotinamide phosphoribosyltransferase
mm9_v1_chr2_-_26923387_26923387	2.09161	NKX2-3_NKX2-5.p2	NM_001159602|Tmem8c|66139|transmembrane protein 8C
mm9_v1_chr1_+_40497472_40497552	2.08438	NKX2-3_NKX2-5.p2	NM_001025602|Il1rl1|17082|interleukin 1 receptor-like 1	D13695|Il1rl1|17082|interleukin 1 receptor-like 1
mm9_v1_chr2_+_34631124_34631274	2.07673	NKX2-3_NKX2-5.p2	M30779|Hspa5|14828|heat shock protein 5	M19351|Hspa5|14828|heat shock protein 5	AK198632|Hspa5|14828|heat shock protein 5	AK215158|Hspa5|14828|heat shock protein 5
mm9_v1_chr16_-_19706433_19706494	2.06521	NKX2-3_NKX2-5.p2	NM_177356|Lamp3|239739|lysosomal-associated membrane protein 3
mm9_v1_chr19_-_5845001_5845012	2.05034	NKX2-3_NKX2-5.p2	BC025215|Neat1|66961|nuclear paraspeckle assembly transcript 1 (non-protein coding)
mm9_v1_chr13_-_104554635_104554661	2.04429	NKX2-3_NKX2-5.p2	AK081447|Srsf12|218543|serine/arginine-rich splicing factor 12	AK037115|Srsf12|218543|serine/arginine-rich splicing factor 12	AK033354|Srsf12|218543|serine/arginine-rich splicing factor 12	NM_172592|Srsf12|218543|serine/arginine-rich splicing factor 12
mm9_v1_chr6_+_55027608_55027621	1.99704	NKX2-3_NKX2-5.p2	AK191772|Gars|353172|glycyl-tRNA synthetase
mm9_v1_chr1_-_151808361_151808434	1.97514	NKX2-3_NKX2-5.p2	M72394|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)	AK144750|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)	AK172121|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)	BC003816|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)	NM_008869|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)
mm9_v1_chr8_+_48907496_48907496	1.93227	NKX2-3_NKX2-5.p2	NM_001111318|Cldn24|100039801|claudin 22-like
mm9_v1_chr3_-_57098670_57098869	1.92344	NKX2-3_NKX2-5.p2	L15429|Tm4sf1|17112|transmembrane 4 superfamily member 1	L15443|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK133556|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK077326|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK164718|Tm4sf1|17112|transmembrane 4 superfamily member 1
mm9_v1_chr11_-_86399926_86400010	1.9232	NKX2-3_NKX2-5.p2	AK217200|Tmem49|75909|transmembrane protein 49
mm9_v1_chr19_+_55700193_55700329	1.89822	NKX2-3_NKX2-5.p2	
mm9_v1_chr4_+_6321713_6321979	1.88848	NKX2-3_NKX2-5.p2	AK213873|Sdcbp|53378|syndecan binding protein
mm9_v1_chr19_-_5844533_5844701	1.87654	NKX2-3_NKX2-5.p2	AK191927|Neat1|66961|nuclear paraspeckle assembly transcript 1 (non-protein coding)	AK197973|Neat1|66961|nuclear paraspeckle assembly transcript 1 (non-protein coding)	BC095948|Neat1|66961|nuclear paraspeckle assembly transcript 1 (non-protein coding)	BC064019|Neat1|66961|nuclear paraspeckle assembly transcript 1 (non-protein coding)
mm9_v1_chr15_+_78860043_78860112	1.85715	NKX2-3_NKX2-5.p2	AK195119|H1f0|14958|H1 histone family, member 0
mm9_v1_chr13_+_55501008_55501081	1.85106	NKX2-3_NKX2-5.p2	NM_011392|Slc34a1|20505|solute carrier family 34 (sodium phosphate), member 1	AK018740|Slc34a1|20505|solute carrier family 34 (sodium phosphate), member 1	AB163922|Slc34a1|20505|solute carrier family 34 (sodium phosphate), member 1	U22465|Slc34a1|20505|solute carrier family 34 (sodium phosphate), member 1	BC020529|Slc34a1|20505|solute carrier family 34 (sodium phosphate), member 1	L33878|Slc34a1|20505|solute carrier family 34 (sodium phosphate), member 1
mm9_v1_chr4_+_118906433_118906436	1.84908	NKX2-3_NKX2-5.p2	NM_001042411|Lepre1|56401|leprecan 1	AK159505|Lepre1|56401|leprecan 1
mm9_v1_chr6_+_112409498_112409498	1.83765	NKX2-3_NKX2-5.p2	BC024383|Cav3|12391|caveolin 3	NM_007617|Cav3|12391|caveolin 3
mm9_v1_chr11_-_120668581_120668636	1.82533	NKX2-3_NKX2-5.p2	AK078721|Fasn|14104|fatty acid synthase
mm9_v1_chr9_-_110649625_110649648	1.82182	NKX2-3_NKX2-5.p2	BC013446|Pth1r|19228|parathyroid hormone 1 receptor	NM_011199|Pth1r|19228|parathyroid hormone 1 receptor
mm9_v1_chr1_+_137904795_137904795	1.79857	NKX2-3_NKX2-5.p2	NM_001160145|Tmem9|66241|transmembrane protein 9
mm9_v1_chr5_+_147760198_147760451	1.79494	NKX2-3_NKX2-5.p2	NM_025652|Gtf3a|66596|general transcription factor III A	AF391799|Gtf3a|66596|general transcription factor III A	AK008247|Gtf3a|66596|general transcription factor III A	AK011845|Gtf3a|66596|general transcription factor III A	AK143627|Gtf3a|66596|general transcription factor III A	AK012797|Gtf3a|66596|general transcription factor III A	AK017234|Gtf3a|66596|general transcription factor III A	AK183221|Gtf3a|66596|general transcription factor III A
mm9_v1_chr6_+_34659440_34659540	1.77093	NKX2-3_NKX2-5.p2	NM_145575|Cald1|109624|caldesmon 1	BC019435|Cald1|109624|caldesmon 1	AK014755|Cald1|109624|caldesmon 1	AK160593|Cald1|109624|caldesmon 1
mm9_v1_chr7_-_149762551_149762560	1.75074	NKX2-3_NKX2-5.p2	AK003142|H19|14955|H19 fetal liver mRNA
mm9_v1_chr13_-_115248787_115248889	1.74702	NKX2-3_NKX2-5.p2	X83377|Fst|14313|follistatin	Z29532|Fst|14313|follistatin
mm9_v1_chr2_-_119916315_119916503	1.7402	NKX2-3_NKX2-5.p2	AK008769|Ehd4|98878|EH-domain containing 4	AK076544|Ehd4|98878|EH-domain containing 4
mm9_v1_chr4_-_129055102_129055140	1.71451	NKX2-3_NKX2-5.p2	BC017614|Zbtb8a|73680|zinc finger and BTB domain containing 8a
mm9_v1_chr1_+_158769044_158769153	1.70355	NKX2-3_NKX2-5.p2	AK142319|Angptl1|72713|angiopoietin-like 1	AK012888|Angptl1|72713|angiopoietin-like 1	BC082563|Angptl1|72713|angiopoietin-like 1	NM_028333|Angptl1|72713|angiopoietin-like 1
mm9_v1_chr8_-_112103065_112103072	1.66965	NKX2-3_NKX2-5.p2	NM_017370|Hp|15439|haptoglobin
mm9_v1_chr1_+_51346086_51346100	1.66905	NKX2-3_NKX2-5.p2	AK084096|Sdpr|20324|serum deprivation response
mm9_v1_chr5_+_52755183_52755234	1.64218	NKX2-3_NKX2-5.p2	AK145194|Sod3|20657|superoxide dismutase 3, extracellular	AK075570|Sod3|20657|superoxide dismutase 3, extracellular	BC010975|Sod3|20657|superoxide dismutase 3, extracellular
mm9_v1_chr5_+_88354611_88354672	1.63397	NKX2-3_NKX2-5.p2	AK021350|Csn3|12994|casein kappa	AK085710|Csn3|12994|casein kappa	AK164788|Csn3|12994|casein kappa	BC005653|Csn3|12994|casein kappa	BC035443|Csn3|12994|casein kappa	BC049949|Csn3|12994|casein kappa	BC004601|Csn3|12994|casein kappa	BC050269|Csn3|12994|casein kappa	AK142607|Csn3|12994|casein kappa	NM_007786|Csn3|12994|casein kappa	AK142673|Csn3|12994|casein kappa	M10114|Csn3|12994|casein kappa
mm9_v1_chr2_+_13504271_13504305	1.62836	NKX2-3_NKX2-5.p2	
mm9_v1_chr6_+_112409684_112409691	1.62398	NKX2-3_NKX2-5.p2	U36579|Cav3|12391|caveolin 3
mm9_v1_chr11_+_72264668_72264732	1.61896	NKX2-3_NKX2-5.p2	AK196252|Mybbp1a|18432|MYB binding protein (P160) 1a	AK190076|Mybbp1a|18432|MYB binding protein (P160) 1a	AK194300|Mybbp1a|18432|MYB binding protein (P160) 1a
mm9_v1_chr6_+_115372083_115372128	1.60268	NKX2-3_NKX2-5.p2	AY208183|Pparg|19016|peroxisome proliferator activated receptor gamma	AY208184|Pparg|19016|peroxisome proliferator activated receptor gamma	AY243585|Pparg|19016|peroxisome proliferator activated receptor gamma	BC021798|Pparg|19016|peroxisome proliferator activated receptor gamma	NM_011146|Pparg|19016|peroxisome proliferator activated receptor gamma	U09138|Pparg|19016|peroxisome proliferator activated receptor gamma	EF062476|Pparg|19016|peroxisome proliferator activated receptor gamma	CT010340|Pparg|19016|peroxisome proliferator activated receptor gamma
mm9_v1_chr9_-_79566271_79566499	1.59448	NKX2-3_NKX2-5.p2	U25652|Col12a1|12816|collagen, type XII, alpha 1	NM_007730|Col12a1|12816|collagen, type XII, alpha 1
mm9_v1_chr11_+_96160484_96160526	1.5871	NKX2-3_NKX2-5.p2	BC016893|Hoxb6|15414|homeobox B6	NM_008269|Hoxb6|15414|homeobox B6
mm9_v1_chr14_-_73762840_73762848	1.57912	NKX2-3_NKX2-5.p2	AK205546|Itm2b|16432|integral membrane protein 2B	AK205709|Itm2b|16432|integral membrane protein 2B	AK209176|Itm2b|16432|integral membrane protein 2B	AK215843|Itm2b|16432|integral membrane protein 2B	AK217202|Itm2b|16432|integral membrane protein 2B	AK218926|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr11_+_52202706_52202713	1.57427	NKX2-3_NKX2-5.p2	AK183628|Vdac1|22333|voltage-dependent anion channel 1	AK195288|Vdac1|22333|voltage-dependent anion channel 1
mm9_v1_chr3_+_60432922_60432975	1.57034	NKX2-3_NKX2-5.p2	AK166145|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr11_+_79845841_79845980	1.5647	NKX2-3_NKX2-5.p2	AK076010|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)
mm9_v1_chr19_-_4877874_4877883	1.56216	NKX2-3_NKX2-5.p2	BC111890|Actn3|11474|actinin alpha 3	AF093775|Actn3|11474|actinin alpha 3	NM_013456|Actn3|11474|actinin alpha 3
mm9_v1_chr15_-_103045710_103045798	1.54439	NKX2-3_NKX2-5.p2	X99641|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK018349|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK030442|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK032975|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK030366|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001110216|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_007626|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr4_+_57907600_57907648	1.52266	NKX2-3_NKX2-5.p2	BC034188|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr1_+_109319264_109319272	1.51144	NKX2-3_NKX2-5.p2	AK014524|Serpinb7|116872|serine (or cysteine) peptidase inhibitor, clade B, member 7	NM_027548|Serpinb7|116872|serine (or cysteine) peptidase inhibitor, clade B, member 7	BC064004|Serpinb7|116872|serine (or cysteine) peptidase inhibitor, clade B, member 7
mm9_v1_chr11_+_96160268_96160437	1.50844	NKX2-3_NKX2-5.p2	X56459|Hoxb6|15414|homeobox B6	AK011622|Hoxb6|15414|homeobox B6
mm9_v1_chr1_+_90003410_90003436	1.50524	NKX2-3_NKX2-5.p2	AY227198|Ugt1a6b|394435|UDP glucuronosyltransferase 1 family, polypeptide A6B
mm9_v1_chr5_-_136174262_136174403	1.50138	NKX2-3_NKX2-5.p2	
mm9_v1_chr6_-_136889984_136890008	1.50101	NKX2-3_NKX2-5.p2	AK008273|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta
mm9_v1_chr1_-_172018982_172019074	1.49934	NKX2-3_NKX2-5.p2	AK196844|Ddr2|18214|discoidin domain receptor family, member 2	NM_022563|Ddr2|18214|discoidin domain receptor family, member 2
mm9_v1_chr14_-_61877218_61877326	1.4981	NKX2-3_NKX2-5.p2	BC138960|Sgcg|24053|sarcoglycan, gamma (dystrophin-associated glycoprotein)	BC138961|Sgcg|24053|sarcoglycan, gamma (dystrophin-associated glycoprotein)	AB024922|Sgcg|24053|sarcoglycan, gamma (dystrophin-associated glycoprotein)	AK132610|Sgcg|24053|sarcoglycan, gamma (dystrophin-associated glycoprotein)	AF282901|Sgcg|24053|sarcoglycan, gamma (dystrophin-associated glycoprotein)	NM_011892|Sgcg|24053|sarcoglycan, gamma (dystrophin-associated glycoprotein)
mm9_v1_chr2_+_162758440_162758589	1.49418	NKX2-3_NKX2-5.p2	AK051608|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr9_-_78326946_78326968	1.49354	NKX2-3_NKX2-5.p2	BC099609|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1
mm9_v1_chr5_-_108304062_108304125	1.49014	NKX2-3_NKX2-5.p2	AK165332|Evi5|14020|ecotropic viral integration site 5	BC030056|Evi5|14020|ecotropic viral integration site 5	NM_007964|Evi5|14020|ecotropic viral integration site 5	U53586|Evi5|14020|ecotropic viral integration site 5
mm9_v1_chr11_-_74991244_74991377	1.4857	NKX2-3_NKX2-5.p2	AK206282|Ovca2|246257|candidate tumor suppressor in ovarian cancer 2
mm9_v1_chrX_+_156278399_156278494	1.48143	NKX2-3_NKX2-5.p2	AK028299|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_001135728|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr4_-_132383213_132383408	1.46613	NKX2-3_NKX2-5.p2	AK198369|Ppp1r8|100336|protein phosphatase 1, regulatory (inhibitor) subunit 8
mm9_v1_chr5_-_17341534_17341556	1.46502	NKX2-3_NKX2-5.p2	L23108|Cd36|12491|CD36 antigen	AK151355|Cd36|12491|CD36 antigen
mm9_v1_chr18_+_61085283_61085301	1.4491	NKX2-3_NKX2-5.p2	AK083245|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK163179|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	NM_177407|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK122410|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	X14836|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr2_-_110203264_110203281	1.44869	NKX2-3_NKX2-5.p2	AK159648|Fibin|67606|fin bud initiation factor homolog (zebrafish)
mm9_v1_chr2_+_35413977_35414092	1.43912	NKX2-3_NKX2-5.p2	NM_001114125|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	DQ473307|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr4_+_8533630_8533662	1.43849	NKX2-3_NKX2-5.p2	AK213817|Rab2a|59021|RAB2A, member RAS oncogene family	AK218701|Rab2a|59021|RAB2A, member RAS oncogene family
mm9_v1_chr2_+_109516053_109516053	1.43316	NKX2-3_NKX2-5.p2	AY057909|Bdnf|12064|brain derived neurotrophic factor	AY057910|Bdnf|12064|brain derived neurotrophic factor	AY057911|Bdnf|12064|brain derived neurotrophic factor	EF125670|Bdnf|12064|brain derived neurotrophic factor	EF125671|Bdnf|12064|brain derived neurotrophic factor	EF125672|Bdnf|12064|brain derived neurotrophic factor	NM_001048139|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr15_-_96850752_96850787	1.43172	NKX2-3_NKX2-5.p2	BC031717|Slc38a4|69354|solute carrier family 38, member 4	AY027919|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr17_-_14831233_14831243	1.42652	NKX2-3_NKX2-5.p2	AK142552|Thbs2|21826|thrombospondin 2
mm9_v1_chr1_+_136186579_136186632	1.42627	NKX2-3_NKX2-5.p2	NM_031189|Myog|17928|myogenin	X15784|Myog|17928|myogenin	D90156|Myog|17928|myogenin	BC068019|Myog|17928|myogenin	AB221643|Myog|17928|myogenin
mm9_v1_chr2_+_173603706_173603746	1.41955	NKX2-3_NKX2-5.p2	BC024562|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK205322|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK182293|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chr11_+_51085400_51085500	1.41761	NKX2-3_NKX2-5.p2	AF005423|Clk4|12750|CDC like kinase 4	AK161739|Clk4|12750|CDC like kinase 4
mm9_v1_chr2_+_170336729_170336729	1.40729	NKX2-3_NKX2-5.p2	AK136249|Pfdn4|109054|prefoldin 4	NM_001110152|Pfdn4|109054|prefoldin 4
mm9_v1_chr13_-_102462584_102462601	1.40221	NKX2-3_NKX2-5.p2	AK046259|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	NM_001024955|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chr7_-_35070627_35070627	1.38897	NKX2-3_NKX2-5.p2	AK076994|4931406P16Rik|233103|RIKEN cDNA 4931406P16 gene	NM_172741|4931406P16Rik|233103|RIKEN cDNA 4931406P16 gene
mm9_v1_chrX_+_130385690_130385739	1.38739	NKX2-3_NKX2-5.p2	AK014761|Tnmd|64103|tenomodulin	BC006919|Tnmd|64103|tenomodulin	AB055422|Tnmd|64103|tenomodulin
mm9_v1_chr7_-_53176582_53176892	1.38494	NKX2-3_NKX2-5.p2	BC001999|Emp3|13732|epithelial membrane protein 3	AF011750|Emp3|13732|epithelial membrane protein 3	U87948|Emp3|13732|epithelial membrane protein 3	NM_010129|Emp3|13732|epithelial membrane protein 3
mm9_v1_chr7_-_22813915_22813915	1.38113	NKX2-3_NKX2-5.p2	NM_001166746|Vmn1r111|667292|vomeronasal 1 receptor 111	NM_001166839|Gm4172|100043016|predicted gene 4172	NM_001167168|Gm4220|100043088|predicted gene 4220	NM_001167169|Gm4179|100043029|predicted gene 4179
mm9_v1_chr3_+_88128944_88129011	1.37081	NKX2-3_NKX2-5.p2	AB027142|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	NM_020003|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK075614|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK150794|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK154340|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK007803|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK171042|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK171142|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK181848|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK189139|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK002728|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK080538|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK170696|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK172606|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	BC021547|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AB027141|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK160793|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene
mm9_v1_chr2_+_69058005_69058054	1.36986	NKX2-3_NKX2-5.p2	AK148450|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	Z47787|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	BC111905|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	AK148465|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	NM_021331|G6pc2|14378|glucose-6-phosphatase, catalytic, 2
mm9_v1_chr1_-_72330767_72330887	1.36567	NKX2-3_NKX2-5.p2	AF232011|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	BC013530|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AF242204|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK090327|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK135714|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK162100|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK010260|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	NM_023523|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase
mm9_v1_chr2_+_25264823_25264862	1.3606	NKX2-3_NKX2-5.p2	
mm9_v1_chr18_+_69753035_69753127	1.35442	NKX2-3_NKX2-5.p2	AK014343|Tcf4|21413|transcription factor 4	U16321|Tcf4|21413|transcription factor 4	AK132140|Tcf4|21413|transcription factor 4	BC014293|Tcf4|21413|transcription factor 4
mm9_v1_chr11_-_51414597_51414704	1.3509	NKX2-3_NKX2-5.p2	AK193201|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK196074|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK186800|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B
mm9_v1_chr11_-_98862163_98862321	1.34644	NKX2-3_NKX2-5.p2	AK138079|Top2a|21973|topoisomerase (DNA) II alpha	BC094326|Top2a|21973|topoisomerase (DNA) II alpha
mm9_v1_chr5_-_17355533_17355611	1.33701	NKX2-3_NKX2-5.p2	AK172162|Cd36|12491|CD36 antigen	BC010262|Cd36|12491|CD36 antigen	AK150648|Cd36|12491|CD36 antigen	NM_001159556|Cd36|12491|CD36 antigen	NM_001159557|Cd36|12491|CD36 antigen
mm9_v1_chr1_+_34364633_34364780	1.33184	NKX2-3_NKX2-5.p2	AK009079|Dst|13518|dystonin
mm9_v1_chr7_-_149838254_149838314	1.32773	NKX2-3_NKX2-5.p2	AK146531|Igf2|16002|insulin-like growth factor 2
mm9_v1_chr8_-_37631532_37631612	1.32595	NKX2-3_NKX2-5.p2	BC096052|Dlc1|50768|deleted in liver cancer 1	BC028562|Dlc1|50768|deleted in liver cancer 1	BC056230|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr1_+_51345952_51345993	1.32202	NKX2-3_NKX2-5.p2	AK035324|Sdpr|20324|serum deprivation response	BC027005|Sdpr|20324|serum deprivation response	NM_138741|Sdpr|20324|serum deprivation response	AK132324|Sdpr|20324|serum deprivation response
mm9_v1_chr9_-_53012444_53012529	1.32196	NKX2-3_NKX2-5.p2	AK166787|Ddx10|77591|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
mm9_v1_chr7_-_52359079_52359191	1.31981	NKX2-3_NKX2-5.p2	BC003786|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	D37874|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	AK152879|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	AK146933|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	AK008167|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	AK008360|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	NM_010189|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter
mm9_v1_chr11_+_84008939_84008965	1.31745	NKX2-3_NKX2-5.p2	NM_133360|Acaca|107476|acetyl-Coenzyme A carboxylase alpha	AY451393|Acaca|107476|acetyl-Coenzyme A carboxylase alpha
mm9_v1_chr16_-_52268571_52268603	1.30459	NKX2-3_NKX2-5.p2	AK161090|Alcam|11658|activated leukocyte cell adhesion molecule
mm9_v1_chr11_-_107577781_107577835	1.30187	NKX2-3_NKX2-5.p2	AK132580|Cacng1|12299|calcium channel, voltage-dependent, gamma subunit 1	BC099482|Cacng1|12299|calcium channel, voltage-dependent, gamma subunit 1	NM_007582|Cacng1|12299|calcium channel, voltage-dependent, gamma subunit 1	AJ006306|Cacng1|12299|calcium channel, voltage-dependent, gamma subunit 1
mm9_v1_chr14_-_71107810_71107841	1.30099	NKX2-3_NKX2-5.p2	AY550930|Xpo7|65246|exportin 7	AK143729|Xpo7|65246|exportin 7
mm9_v1_chr5_-_100465086_100465197	1.29561	NKX2-3_NKX2-5.p2	AK011143|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like
mm9_v1_chr14_+_119187092_119187139	1.29088	NKX2-3_NKX2-5.p2	NM_001160096|Cldn10|58187|claudin 10	NM_001160097|Cldn10|58187|claudin 10	NM_001160098|Cldn10|58187|claudin 10	NM_023878|Cldn10|58187|claudin 10	AK020131|Cldn10|58187|claudin 10	BC021770|Cldn10|58187|claudin 10
mm9_v1_chr3_+_84756090_84756352	1.28832	NKX2-3_NKX2-5.p2	AF391192|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_080428|Fbxw7|50754|F-box and WD-40 domain protein 7	AF427101|Fbxw7|50754|F-box and WD-40 domain protein 7	BC131648|Fbxw7|50754|F-box and WD-40 domain protein 7	AB221593|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr13_-_38615229_38615324	1.2883	NKX2-3_NKX2-5.p2	BC036155|Txndc5|105245|thioredoxin domain containing 5	AK224911|Txndc5|105245|thioredoxin domain containing 5
mm9_v1_chr11_-_17847399_17847495	1.28782	NKX2-3_NKX2-5.p2	AK018594|Etaa1|68145|Ewing's tumor-associated antigen 1
mm9_v1_chrX_+_131252456_131252527	1.27861	NKX2-3_NKX2-5.p2	NM_001166377|Armcx1|78248|armadillo repeat containing, X-linked 1	NM_001166378|Armcx1|78248|armadillo repeat containing, X-linked 1	NM_001166379|Armcx1|78248|armadillo repeat containing, X-linked 1	NM_001166380|Armcx1|78248|armadillo repeat containing, X-linked 1	NM_030066|Armcx1|78248|armadillo repeat containing, X-linked 1	BC026488|Armcx1|78248|armadillo repeat containing, X-linked 1	AK147002|Armcx1|78248|armadillo repeat containing, X-linked 1	BC068228|Armcx1|78248|armadillo repeat containing, X-linked 1
mm9_v1_chr9_+_43118845_43118930	1.27708	NKX2-3_NKX2-5.p2	NM_023655|Trim29|72169|tripartite motif-containing 29	BC027353|Trim29|72169|tripartite motif-containing 29
mm9_v1_chr1_+_90034940_90035048	1.26985	NKX2-3_NKX2-5.p2	AY227197|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A	U09930|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A	D87867|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A
mm9_v1_chr8_+_46970814_46970842	1.26846	NKX2-3_NKX2-5.p2	AF002283|Pdlim3|53318|PDZ and LIM domain 3	NM_016798|Pdlim3|53318|PDZ and LIM domain 3	AK078421|Pdlim3|53318|PDZ and LIM domain 3	AK141331|Pdlim3|53318|PDZ and LIM domain 3	AK164054|Pdlim3|53318|PDZ and LIM domain 3
mm9_v1_chr18_+_37979199_37979219	1.26572	NKX2-3_NKX2-5.p2	AF464163|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	NM_033583|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	AF464164|Pcdhgb4|93701|protocadherin gamma subfamily B, 4
mm9_v1_chr9_+_96159123_96159160	1.26145	NKX2-3_NKX2-5.p2	NM_001184709|Tfdp2|211586|transcription factor Dp 2	AK033356|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr6_+_38542722_38542769	1.2609	NKX2-3_NKX2-5.p2	BC002314|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)
mm9_v1_chr11_-_40562196_40562300	1.25486	NKX2-3_NKX2-5.p2	
mm9_v1_chr4_-_129055233_129055271	1.25147	NKX2-3_NKX2-5.p2	AK010736|Zbtb8a|73680|zinc finger and BTB domain containing 8a	NM_028603|Zbtb8a|73680|zinc finger and BTB domain containing 8a
mm9_v1_chr9_-_78326584_78326612	1.25137	NKX2-3_NKX2-5.p2	AK206186|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1
mm9_v1_chr17_+_75784448_75784497	1.24479	NKX2-3_NKX2-5.p2	AK080024|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chr18_-_39646734_39646900	1.2441	NKX2-3_NKX2-5.p2	AK037733|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	DQ504162|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	HM236293|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13358|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13359|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	NM_008173|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129912|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129913|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X04435|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr18_+_37979242_37979328	1.24151	NKX2-3_NKX2-5.p2	BC138677|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	AF464160|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	AY013813|Pcdhgc5|93708|protocadherin gamma subfamily C, 5
mm9_v1_chr9_-_36540210_36540345	1.23975	NKX2-3_NKX2-5.p2	AK017358|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
mm9_v1_chr15_-_73640331_73640366	1.22916	NKX2-3_NKX2-5.p2	BC087907|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4
mm9_v1_chrX_+_71518323_71518327	1.22597	NKX2-3_NKX2-5.p2	
mm9_v1_chr5_-_69933835_69933870	1.22078	NKX2-3_NKX2-5.p2	AK009405|Yipf7|75581|Yip1 domain family, member 7	BC089576|Yipf7|75581|Yip1 domain family, member 7	NM_023784|Yipf7|75581|Yip1 domain family, member 7
mm9_v1_chr11_+_93905501_93905545	1.21517	NKX2-3_NKX2-5.p2	AK014060|Spag9|70834|sperm associated antigen 9	AK079365|Spag9|70834|sperm associated antigen 9	NM_001025428|Spag9|70834|sperm associated antigen 9	NM_001025429|Spag9|70834|sperm associated antigen 9	NM_001025430|Spag9|70834|sperm associated antigen 9	AK172961|Spag9|70834|sperm associated antigen 9
mm9_v1_chr17_-_14831262_14831287	1.21346	NKX2-3_NKX2-5.p2	NM_011581|Thbs2|21826|thrombospondin 2
mm9_v1_chr15_+_78860623_78860757	1.21308	NKX2-3_NKX2-5.p2	
mm9_v1_chr7_-_151621960_151622035	1.21099	NKX2-3_NKX2-5.p2	AK195592|Cttn|13043|cortactin
mm9_v1_chr9_-_15105864_15105946	1.20951	NKX2-3_NKX2-5.p2	CT010296|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene	BC011540|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene	BC025213|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene
mm9_v1_chr7_-_23014502_23014502	1.20705	NKX2-3_NKX2-5.p2	NM_001166742|Vmn1r118|667259|vomeronasal 1 receptor 118	NM_001167150|Gm8453|667094|predicted gene 8453	NM_001167151|Gm4498|100043523|predicted gene 4498
mm9_v1_chr9_+_113721698_113721717	1.20603	NKX2-3_NKX2-5.p2	AK043551|Clasp2|76499|CLIP associating protein 2	AK148966|Clasp2|76499|CLIP associating protein 2	AK164326|Clasp2|76499|CLIP associating protein 2	NM_001081960|Clasp2|76499|CLIP associating protein 2	NM_029633|Clasp2|76499|CLIP associating protein 2	BC117963|Clasp2|76499|CLIP associating protein 2	BC117964|Clasp2|76499|CLIP associating protein 2	BC131791|Clasp2|76499|CLIP associating protein 2	BC131792|Clasp2|76499|CLIP associating protein 2	BC141415|Clasp2|76499|CLIP associating protein 2
mm9_v1_chr15_+_102864825_102864872	1.20332	NKX2-3_NKX2-5.p2	NM_013553|Hoxc4|15423|homeobox C4	X69019|Hoxc4|15423|homeobox C4	BC144778|Hoxc4|15423|homeobox C4	BC150664|Hoxc4|15423|homeobox C4
mm9_v1_chr6_+_124254668_124254724	1.19455	NKX2-3_NKX2-5.p2	NM_001170395|Cd163|93671|CD163 antigen	NM_053094|Cd163|93671|CD163 antigen	AF274883|Cd163|93671|CD163 antigen	BC144848|Cd163|93671|CD163 antigen	BC145793|Cd163|93671|CD163 antigen	DQ058616|Cd163|93671|CD163 antigen	DQ058617|Cd163|93671|CD163 antigen
mm9_v1_chr4_-_112447424_112447470	1.19347	NKX2-3_NKX2-5.p2	EF494906|Skint10|230613|selection and upkeep of intraepithelial T cells 10	EF494905|Skint10|230613|selection and upkeep of intraepithelial T cells 10	AK037152|Skint10|230613|selection and upkeep of intraepithelial T cells 10	AK042291|Skint10|230613|selection and upkeep of intraepithelial T cells 10	NM_177668|Skint10|230613|selection and upkeep of intraepithelial T cells 10	AK040044|Skint10|230613|selection and upkeep of intraepithelial T cells 10
mm9_v1_chr1_-_168058009_168058054	1.19186	NKX2-3_NKX2-5.p2	BC117936|Dusp27|240892|dual specificity phosphatase 27 (putative)	AK142263|Dusp27|240892|dual specificity phosphatase 27 (putative)	NM_001033344|Dusp27|240892|dual specificity phosphatase 27 (putative)	NM_001160049|Dusp27|240892|dual specificity phosphatase 27 (putative)	AK048603|Dusp27|240892|dual specificity phosphatase 27 (putative)
mm9_v1_chr2_+_40412520_40412541	1.18261	NKX2-3_NKX2-5.p2	AK196468|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK210662|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1
mm9_v1_chr6_+_87378995_87379026	1.18135	NKX2-3_NKX2-5.p2	BC145044|Bmp10|12154|bone morphogenetic protein 10	BC145983|Bmp10|12154|bone morphogenetic protein 10	NM_009756|Bmp10|12154|bone morphogenetic protein 10	AF101033|Bmp10|12154|bone morphogenetic protein 10
mm9_v1_chr2_-_34678700_34678700	1.18123	NKX2-3_NKX2-5.p2	AF140683|Fbxw2|30050|F-box and WD-40 domain protein 2	NM_001164768|Fbxw2|30050|F-box and WD-40 domain protein 2
mm9_v1_chr5_-_123438517_123438541	1.17242	NKX2-3_NKX2-5.p2	NM_001005866|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr1_+_45401659_45401671	1.17195	NKX2-3_NKX2-5.p2	AK079113|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr15_-_36701729_36701849	1.16992	NKX2-3_NKX2-5.p2	AK149013|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr8_-_87784612_87784676	1.16953	NKX2-3_NKX2-5.p2	AK219106|Vps35|65114|vacuolar protein sorting 35
mm9_v1_chr9_-_78326621_78326646	1.16707	NKX2-3_NKX2-5.p2	AK199391|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK210662|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK196468|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1
mm9_v1_chr7_-_123182257_123182257	1.16193	NKX2-3_NKX2-5.p2	AK048143|Sox6|20679|SRY-box containing gene 6	NM_001025559|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr9_+_35024031_35024058	1.1527	NKX2-3_NKX2-5.p2	AK219602|Srpr|67398|signal recognition particle receptor ('docking protein')
mm9_v1_chr18_+_37821598_37821598	1.15196	NKX2-3_NKX2-5.p2	AY013792|Pcdhga1|93709|protocadherin gamma subfamily A, 1	NM_033584|Pcdhga1|93709|protocadherin gamma subfamily A, 1
mm9_v1_chr9_+_106270889_106271052	1.15136	NKX2-3_NKX2-5.p2	AK140372|Dusp7|235584|dual specificity phosphatase 7	NM_153459|Dusp7|235584|dual specificity phosphatase 7
mm9_v1_chr19_+_21354915_21354945	1.14659	NKX2-3_NKX2-5.p2	AK185148|Zfand5|22682|zinc finger, AN1-type domain 5
mm9_v1_chrX_-_73088288_73088302	1.14372	NKX2-3_NKX2-5.p2	AK146087|Pls3|102866|plastin 3 (T-isoform)	NM_001166454|Pls3|102866|plastin 3 (T-isoform)
mm9_v1_chr6_-_148894953_148895000	1.14155	NKX2-3_NKX2-5.p2	BC076599|Fam60a|56306|family with sequence similarity 60, member A	NM_019643|Fam60a|56306|family with sequence similarity 60, member A	AK166569|Fam60a|56306|family with sequence similarity 60, member A	AK145384|Fam60a|56306|family with sequence similarity 60, member A
mm9_v1_chr16_+_20692792_20692908	1.13699	NKX2-3_NKX2-5.p2	
mm9_v1_chr2_-_44968728_44968798	1.13693	NKX2-3_NKX2-5.p2	AJ535782|Zeb2|24136|zinc finger E-box binding homeobox 2	AK031541|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535780|Zeb2|24136|zinc finger E-box binding homeobox 2	NM_015753|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr7_-_125629996_125630002	1.1328	NKX2-3_NKX2-5.p2	AK164927|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2	AK081844|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm9_v1_chr16_+_33298953_33298979	1.13213	NKX2-3_NKX2-5.p2	AK198971|Snx4|69150|sorting nexin 4
mm9_v1_chr18_+_35776026_35776084	1.12654	NKX2-3_NKX2-5.p2	AK012839|Paip2|67869|polyadenylate-binding protein-interacting protein 2
mm9_v1_chr4_+_48676385_48676493	1.12304	NKX2-3_NKX2-5.p2	BC089601|Murc|68016|muscle-related coiled-coil protein	NM_026509|Murc|68016|muscle-related coiled-coil protein	AK009073|Murc|68016|muscle-related coiled-coil protein	AK009691|Murc|68016|muscle-related coiled-coil protein	EU487254|Murc|68016|muscle-related coiled-coil protein
mm9_v1_chr16_+_43247396_43247452	1.12029	NKX2-3_NKX2-5.p2	AK005028|Zbtb20|56490|zinc finger and BTB domain containing 20	NM_019778|Zbtb20|56490|zinc finger and BTB domain containing 20	NM_181058|Zbtb20|56490|zinc finger and BTB domain containing 20	BC031114|Zbtb20|56490|zinc finger and BTB domain containing 20
mm9_v1_chr4_-_53156928_53156953	1.11533	NKX2-3_NKX2-5.p2	X75926|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1
mm9_v1_chr6_-_41654290_41654346	1.11449	NKX2-3_NKX2-5.p2	AK028430|Kel|23925|Kell blood group	AF252870|Kel|23925|Kell blood group	NM_032540|Kel|23925|Kell blood group
mm9_v1_chr1_+_60761789_60761789	1.11164	NKX2-3_NKX2-5.p2	BC002266|Eif4a1|13681|eukaryotic translation initiation factor 4A1
mm9_v1_chr2_-_110203298_110203336	1.09737	NKX2-3_NKX2-5.p2	AK011548|Fibin|67606|fin bud initiation factor homolog (zebrafish)	AK012026|Fibin|67606|fin bud initiation factor homolog (zebrafish)
mm9_v1_chr12_+_82049290_82049329	1.09659	NKX2-3_NKX2-5.p2	AK135336|Srsf5|20384|serine/arginine-rich splicing factor 5
mm9_v1_chr5_-_23122181_23122418	1.09268	NKX2-3_NKX2-5.p2	AB006036|Srpk2|20817|serine/arginine-rich protein specific kinase 2	BC020178|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK136861|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK169580|Srpk2|20817|serine/arginine-rich protein specific kinase 2	NM_009274|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr2_+_152106052_152106158	1.08392	NKX2-3_NKX2-5.p2	AK042898|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide
mm9_v1_chr4_-_73596693_73596749	1.08284	NKX2-3_NKX2-5.p2	BC115483|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	BC115484|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	AK009124|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	AK009097|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	NM_027104|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	NM_027981|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene
mm9_v1_chr11_-_77707282_77707373	1.08235	NKX2-3_NKX2-5.p2	U94700|Pipox|19193|pipecolic acid oxidase	BC013525|Pipox|19193|pipecolic acid oxidase	AK135009|Pipox|19193|pipecolic acid oxidase	AK149488|Pipox|19193|pipecolic acid oxidase	AK008555|Pipox|19193|pipecolic acid oxidase	NM_008952|Pipox|19193|pipecolic acid oxidase
mm9_v1_chrX_+_97170927_97171053	1.07865	NKX2-3_NKX2-5.p2	AK028502|Eda|13607|ectodysplasin-A	AF016627|Eda|13607|ectodysplasin-A	AF016628|Eda|13607|ectodysplasin-A	AF016629|Eda|13607|ectodysplasin-A	AF016630|Eda|13607|ectodysplasin-A	DQ168876|Eda|13607|ectodysplasin-A	DQ168877|Eda|13607|ectodysplasin-A	DQ168878|Eda|13607|ectodysplasin-A	DQ168879|Eda|13607|ectodysplasin-A	DQ168880|Eda|13607|ectodysplasin-A	DQ168881|Eda|13607|ectodysplasin-A	NM_001177937|Eda|13607|ectodysplasin-A	NM_001177938|Eda|13607|ectodysplasin-A	NM_001177939|Eda|13607|ectodysplasin-A	NM_001177940|Eda|13607|ectodysplasin-A	NM_001177941|Eda|13607|ectodysplasin-A	NM_001177942|Eda|13607|ectodysplasin-A	NM_001177943|Eda|13607|ectodysplasin-A	NM_001177944|Eda|13607|ectodysplasin-A	NM_010099|Eda|13607|ectodysplasin-A	AF016631|Eda|13607|ectodysplasin-A	AJ243657|Eda|13607|ectodysplasin-A	AK040754|Eda|13607|ectodysplasin-A	AF004435|Eda|13607|ectodysplasin-A	AJ243658|Eda|13607|ectodysplasin-A	AK137551|Eda|13607|ectodysplasin-A	BC125387|Eda|13607|ectodysplasin-A	BC144790|Eda|13607|ectodysplasin-A	BC144791|Eda|13607|ectodysplasin-A
mm9_v1_chr4_+_95224197_95224229	1.07641	NKX2-3_NKX2-5.p2	NM_001113412|Fggy|75578|FGGY carbohydrate kinase domain containing	AK138439|Fggy|75578|FGGY carbohydrate kinase domain containing	AK082737|Fggy|75578|FGGY carbohydrate kinase domain containing
mm9_v1_chr15_-_50721552_50721725	1.07638	NKX2-3_NKX2-5.p2	BC099962|Trps1|83925|trichorhinophalangeal syndrome I (human)	AF346836|Trps1|83925|trichorhinophalangeal syndrome I (human)	NM_032000|Trps1|83925|trichorhinophalangeal syndrome I (human)
mm9_v1_chr7_-_53176218_53176229	1.07601	NKX2-3_NKX2-5.p2	AK146939|Emp3|13732|epithelial membrane protein 3	NM_001146346|Emp3|13732|epithelial membrane protein 3
mm9_v1_chr10_+_82359714_82359858	1.07455	NKX2-3_NKX2-5.p2	AK007891|Txnrd1|50493|thioredoxin reductase 1	AK202828|Txnrd1|50493|thioredoxin reductase 1	AK204569|Txnrd1|50493|thioredoxin reductase 1	AK217830|Txnrd1|50493|thioredoxin reductase 1	AK194198|Txnrd1|50493|thioredoxin reductase 1	AK203123|Txnrd1|50493|thioredoxin reductase 1
mm9_v1_chr10_+_20059547_20059574	1.07398	NKX2-3_NKX2-5.p2	AK169491|Bclaf1|72567|BCL2-associated transcription factor 1
mm9_v1_chrX_-_43809499_43809524	1.06655	NKX2-3_NKX2-5.p2	NM_001085510|Gm4987|245405|predicted gene 4987
mm9_v1_chr18_+_20469364_20469373	1.06452	NKX2-3_NKX2-5.p2	BC154410|Dsg1a|13510|desmoglein 1 alpha	NM_010079|Dsg1a|13510|desmoglein 1 alpha
mm9_v1_chr9_-_86581204_86581205	1.05781	NKX2-3_NKX2-5.p2	AK163278|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	AK163403|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	NM_001198933|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic
mm9_v1_chr10_-_80170504_80170531	1.05359	NKX2-3_NKX2-5.p2	AK205331|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit
mm9_v1_chr18_+_37925619_37925770	1.0424	NKX2-3_NKX2-5.p2	BC054528|Pcdhga12|93724|protocadherin gamma subfamily A, 12	U88550|Pcdhga12|93724|protocadherin gamma subfamily A, 12	AY013795|Pcdhga12|93724|protocadherin gamma subfamily A, 12
mm9_v1_chr18_+_44493726_44493754	1.03916	NKX2-3_NKX2-5.p2	AF230979|Myot|58916|myotilin	AK017447|Myot|58916|myotilin	NM_001033621|Myot|58916|myotilin	BC016214|Myot|58916|myotilin	BC064052|Myot|58916|myotilin
mm9_v1_chrX_+_98644459_98644503	1.03374	NKX2-3_NKX2-5.p2	BC030035|Itgb1bp2|26549|integrin beta 1 binding protein 2	AF140691|Itgb1bp2|26549|integrin beta 1 binding protein 2
mm9_v1_chr15_+_25682945_25682960	1.03337	NKX2-3_NKX2-5.p2	AK161653|Myo10|17909|myosin X
mm9_v1_chr17_+_64245366_64245425	1.02764	NKX2-3_NKX2-5.p2	NM_001037997|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2	U76762|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2	AF286537|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2
mm9_v1_chr2_+_83564607_83564841	1.01806	NKX2-3_NKX2-5.p2	AK140647|Itgav|16410|integrin alpha V	AK080357|Itgav|16410|integrin alpha V	AK020674|Itgav|16410|integrin alpha V	AK149984|Itgav|16410|integrin alpha V	U14135|Itgav|16410|integrin alpha V	BC021600|Itgav|16410|integrin alpha V	BC133682|Itgav|16410|integrin alpha V
mm9_v1_chr14_-_21475715_21475724	1.01745	NKX2-3_NKX2-5.p2	AK041896|Myoz1|59011|myozenin 1	AK009077|Myoz1|59011|myozenin 1
mm9_v1_chrX_+_20276404_20276539	0.986238	NKX2-3_NKX2-5.p2	AK177013|Cdk16|18555|cyclin-dependent kinase 16	AK212751|Cdk16|18555|cyclin-dependent kinase 16
mm9_v1_chr4_+_150227911_150228027	0.979768	NKX2-3_NKX2-5.p2	BC057646|Errfi1|74155|ERBB receptor feedback inhibitor 1
mm9_v1_chr15_+_34044603_34044618	0.975912	NKX2-3_NKX2-5.p2	AK218970|Mtdh|67154|metadherin
mm9_v1_chr9_-_44610921_44611015	0.966581	NKX2-3_NKX2-5.p2	BC021608|Ttc36|192653|tetratricopeptide repeat domain 36	AK165811|Ttc36|192653|tetratricopeptide repeat domain 36	BC026825|Ttc36|192653|tetratricopeptide repeat domain 36
mm9_v1_chr5_-_144266956_144266980	0.96615	NKX2-3_NKX2-5.p2	
mm9_v1_chr17_-_46155601_46155620	0.963982	NKX2-3_NKX2-5.p2	AK031905|Vegfa|22339|vascular endothelial growth factor A
mm9_v1_chr7_+_135689619_135689645	0.961859	NKX2-3_NKX2-5.p2	AK215244|Bag3|29810|BCL2-associated athanogene 3
mm9_v1_chr4_-_43536296_43536373	0.959272	NKX2-3_NKX2-5.p2	X58381|Tpm2|22004|tropomyosin 2, beta	BC014809|Tpm2|22004|tropomyosin 2, beta	M87635|Tpm2|22004|tropomyosin 2, beta	X12650|Tpm2|22004|tropomyosin 2, beta	BC024358|Tpm2|22004|tropomyosin 2, beta	AK003186|Tpm2|22004|tropomyosin 2, beta	AK132162|Tpm2|22004|tropomyosin 2, beta
mm9_v1_chr2_-_110203138_110203154	0.957373	NKX2-3_NKX2-5.p2	BC027250|Fibin|67606|fin bud initiation factor homolog (zebrafish)	AK003790|Fibin|67606|fin bud initiation factor homolog (zebrafish)	NM_026271|Fibin|67606|fin bud initiation factor homolog (zebrafish)
mm9_v1_chr6_-_16848314_16848325	0.956755	NKX2-3_NKX2-5.p2	BC098494|Tcfec|21426|transcription factor EC
mm9_v1_chr7_-_91827857_91827907	0.950462	NKX2-3_NKX2-5.p2	AK002775|Zfand6|65098|zinc finger, AN1-type domain 6	NM_022985|Zfand6|65098|zinc finger, AN1-type domain 6	AK144902|Zfand6|65098|zinc finger, AN1-type domain 6	AK009403|Zfand6|65098|zinc finger, AN1-type domain 6
mm9_v1_chr1_+_174437040_174437140	0.940526	NKX2-3_NKX2-5.p2	AK019231|Tagln2|21346|transgelin 2
mm9_v1_chr8_-_95721654_95721683	0.935171	NKX2-3_NKX2-5.p2	AB023631|Ces1d|104158|carboxylesterase 1D	AF378751|Ces1d|104158|carboxylesterase 1D	AK078879|Ces1d|104158|carboxylesterase 1D
mm9_v1_chr19_-_41288465_41288553	0.931228	NKX2-3_NKX2-5.p2	AK077835|Tm9sf3|107358|transmembrane 9 superfamily member 3
mm9_v1_chr5_+_8893700_8893720	0.930103	NKX2-3_NKX2-5.p2	J03398|Abcb4|18670|ATP-binding cassette, sub-family B (MDR/TAP), member 4	AK144024|Abcb4|18670|ATP-binding cassette, sub-family B (MDR/TAP), member 4	AK165484|Abcb4|18670|ATP-binding cassette, sub-family B (MDR/TAP), member 4	NM_008830|Abcb4|18670|ATP-binding cassette, sub-family B (MDR/TAP), member 4
mm9_v1_chr5_-_135096236_135096321	0.926978	NKX2-3_NKX2-5.p2	AK202900|Eif4h|22384|eukaryotic translation initiation factor 4H	AK197136|Eif4h|22384|eukaryotic translation initiation factor 4H	AK192982|Eif4h|22384|eukaryotic translation initiation factor 4H	AK200162|Eif4h|22384|eukaryotic translation initiation factor 4H	AK195162|Eif4h|22384|eukaryotic translation initiation factor 4H	AK191422|Eif4h|22384|eukaryotic translation initiation factor 4H	AK191093|Eif4h|22384|eukaryotic translation initiation factor 4H	AK192082|Eif4h|22384|eukaryotic translation initiation factor 4H	AK194320|Eif4h|22384|eukaryotic translation initiation factor 4H	AK195976|Eif4h|22384|eukaryotic translation initiation factor 4H	AK197414|Eif4h|22384|eukaryotic translation initiation factor 4H	AK202850|Eif4h|22384|eukaryotic translation initiation factor 4H	AK204156|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr4_+_140522412_140522429	0.926159	NKX2-3_NKX2-5.p2	DQ403000|Sdhb|67680|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)
mm9_v1_chr1_+_136186565_136186569	0.916876	NKX2-3_NKX2-5.p2	BC048683|Myog|17928|myogenin
mm9_v1_chr11_-_96168185_96168223	0.91643	NKX2-3_NKX2-5.p2	AK002860|0610040B09Rik|75395|RIKEN cDNA 0610040B09 gene
mm9_v1_chr8_-_95721702_95721738	0.915493	NKX2-3_NKX2-5.p2	NM_053200|Ces1d|104158|carboxylesterase 1D
mm9_v1_chr14_-_21437545_21437583	0.912736	NKX2-3_NKX2-5.p2	AK047620|Usp54|78787|ubiquitin specific peptidase 54	NM_030180|Usp54|78787|ubiquitin specific peptidase 54
mm9_v1_chr19_+_40164158_40164224	0.905192	NKX2-3_NKX2-5.p2	NM_001167875|Cyp2c50|107141|cytochrome P450, family 2, subfamily c, polypeptide 50	NM_001167877|Cyp2c50|107141|cytochrome P450, family 2, subfamily c, polypeptide 50	NM_134144|Cyp2c50|107141|cytochrome P450, family 2, subfamily c, polypeptide 50	BC051050|Cyp2c50|107141|cytochrome P450, family 2, subfamily c, polypeptide 50	BC011222|Cyp2c50|107141|cytochrome P450, family 2, subfamily c, polypeptide 50	AY206873|Cyp2c50|107141|cytochrome P450, family 2, subfamily c, polypeptide 50	AK149466|Cyp2c50|107141|cytochrome P450, family 2, subfamily c, polypeptide 50
mm9_v1_chr15_+_36103785_36103843	0.904137	NKX2-3_NKX2-5.p2	AK003023|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	AK018914|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	AK008136|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	AK008287|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	BC028543|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	S63758|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K
mm9_v1_chr10_+_79606611_79606693	0.89787	NKX2-3_NKX2-5.p2	AK186963|Atp5d|66043|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
mm9_v1_chr17_+_12571455_12571482	0.895731	NKX2-3_NKX2-5.p2	BC014773|Plg|18815|plasminogen	NM_008877|Plg|18815|plasminogen
mm9_v1_chr2_-_120346171_120346284	0.88996	NKX2-3_NKX2-5.p2	AF060245|Zfp106|20402|zinc finger protein 106	AK029313|Zfp106|20402|zinc finger protein 106
mm9_v1_chr8_+_67492815_67492895	0.889173	NKX2-3_NKX2-5.p2	
mm9_v1_chr1_+_45402907_45402949	0.888126	NKX2-3_NKX2-5.p2	AK029451|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr6_-_52168571_52168571	0.883083	NKX2-3_NKX2-5.p2	NM_010455|Hoxa7|15404|homeobox A7
mm9_v1_chr15_+_80629020_80629144	0.878163	NKX2-3_NKX2-5.p2	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chrX_+_98644445_98644450	0.877797	NKX2-3_NKX2-5.p2	AK003906|Itgb1bp2|26549|integrin beta 1 binding protein 2	NM_013712|Itgb1bp2|26549|integrin beta 1 binding protein 2
mm9_v1_chr5_-_17341713_17341713	0.877599	NKX2-3_NKX2-5.p2	NM_001159555|Cd36|12491|CD36 antigen	NM_007643|Cd36|12491|CD36 antigen
mm9_v1_chr11_+_93905443_93905464	0.876858	NKX2-3_NKX2-5.p2	AK147537|Spag9|70834|sperm associated antigen 9	AK147431|Spag9|70834|sperm associated antigen 9
mm9_v1_chr9_+_7792286_7792314	0.872489	NKX2-3_NKX2-5.p2	AK150630|Tmem123|71929|transmembrane protein 123
mm9_v1_chr13_+_63116293_63116526	0.867379	NKX2-3_NKX2-5.p2	AK141931|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene	NM_028079|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene	BC141279|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene	AJ810420|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene
mm9_v1_chr1_+_44200032_44200079	0.862213	NKX2-3_NKX2-5.p2	AK088931|Bivm|246229|basic, immunoglobulin-like variable motif containing
mm9_v1_chrX_+_12870471_12870561	0.861501	NKX2-3_NKX2-5.p2	AK002917|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
mm9_v1_chr9_-_44611033_44611045	0.858942	NKX2-3_NKX2-5.p2	BC024432|Ttc36|192653|tetratricopeptide repeat domain 36	NM_138951|Ttc36|192653|tetratricopeptide repeat domain 36	BC021613|Ttc36|192653|tetratricopeptide repeat domain 36
mm9_v1_chr13_+_105077914_105078054	0.858642	NKX2-3_NKX2-5.p2	AK030315|Adamts6|108154|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	AK044528|Adamts6|108154|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	NM_001081020|Adamts6|108154|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	BC172116|Adamts6|108154|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
mm9_v1_chr16_+_48310386_48310386	0.856987	NKX2-3_NKX2-5.p2	AY561246|Dppa2|73703|developmental pluripotency associated 2	NM_028615|Dppa2|73703|developmental pluripotency associated 2
mm9_v1_chr6_-_72383243_72383360	0.852548	NKX2-3_NKX2-5.p2	AK191201|Mat2a|232087|methionine adenosyltransferase II, alpha	AK191379|Mat2a|232087|methionine adenosyltransferase II, alpha	AK192240|Mat2a|232087|methionine adenosyltransferase II, alpha	AK195580|Mat2a|232087|methionine adenosyltransferase II, alpha	AK196623|Mat2a|232087|methionine adenosyltransferase II, alpha	AK197103|Mat2a|232087|methionine adenosyltransferase II, alpha	AK200816|Mat2a|232087|methionine adenosyltransferase II, alpha	AK203805|Mat2a|232087|methionine adenosyltransferase II, alpha	AK203913|Mat2a|232087|methionine adenosyltransferase II, alpha	AK201922|Mat2a|232087|methionine adenosyltransferase II, alpha
mm9_v1_chr1_-_58558259_58558259	0.849977	NKX2-3_NKX2-5.p2	AB190256|Orc2|18393|origin recognition complex, subunit 2	NM_001025378|Orc2|18393|origin recognition complex, subunit 2
mm9_v1_chr11_-_74491006_74491182	0.84749	NKX2-3_NKX2-5.p2	AK152284|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	AK164276|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm9_v1_chr3_-_88214215_88214225	0.847206	NKX2-3_NKX2-5.p2	BC034333|Pmf1|67037|polyamine-modulated factor 1
mm9_v1_chr5_+_91197542_91197576	0.846059	NKX2-3_NKX2-5.p2	AF219112|Ppbp|57349|pro-platelet basic protein	AF278700|Ppbp|57349|pro-platelet basic protein	AK010273|Ppbp|57349|pro-platelet basic protein	AK157141|Ppbp|57349|pro-platelet basic protein	AK171720|Ppbp|57349|pro-platelet basic protein	NM_023785|Ppbp|57349|pro-platelet basic protein	AK157077|Ppbp|57349|pro-platelet basic protein	AB042817|Ppbp|57349|pro-platelet basic protein	AK158061|Ppbp|57349|pro-platelet basic protein	BC127043|Ppbp|57349|pro-platelet basic protein	BC127044|Ppbp|57349|pro-platelet basic protein
mm9_v1_chr12_-_105101768_105101807	0.84509	NKX2-3_NKX2-5.p2	BC057984|Serpina1a|20700|serine (or cysteine) peptidase inhibitor, clade A, member 1A
mm9_v1_chr2_-_70856430_70856434	0.841969	NKX2-3_NKX2-5.p2	NM_001110512|Mettl8|228019|methyltransferase like 8	DQ230973|Mettl8|228019|methyltransferase like 8	DQ230974|Mettl8|228019|methyltransferase like 8
mm9_v1_chr9_+_56712850_56712966	0.838403	NKX2-3_NKX2-5.p2	NM_139001|Cspg4|121021|chondroitin sulfate proteoglycan 4	AF352400|Cspg4|121021|chondroitin sulfate proteoglycan 4
mm9_v1_chr18_+_61799306_61799327	0.838187	NKX2-3_NKX2-5.p2	AK143260|LOC545261|545261|hypothetical protein LOC545261
mm9_v1_chr9_-_113563906_113564041	0.834975	NKX2-3_NKX2-5.p2	AK199870|Pdcd6ip|18571|programmed cell death 6 interacting protein
mm9_v1_chr2_-_155999858_155999931	0.830714	NKX2-3_NKX2-5.p2	BC082607|Rbm39|170791|RNA binding motif protein 39
mm9_v1_chr14_+_120724380_120724561	0.829355	NKX2-3_NKX2-5.p2	BC020406|Mbnl2|105559|muscleblind-like 2	BC026711|Mbnl2|105559|muscleblind-like 2	GQ906534|Mbnl2|105559|muscleblind-like 2	AK216404|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr6_-_16848352_16848440	0.822314	NKX2-3_NKX2-5.p2	AK156327|Tcfec|21426|transcription factor EC	AK159579|Tcfec|21426|transcription factor EC	BC052832|Tcfec|21426|transcription factor EC	BC064770|Tcfec|21426|transcription factor EC	AK137141|Tcfec|21426|transcription factor EC	AF077742|Tcfec|21426|transcription factor EC	AK157426|Tcfec|21426|transcription factor EC	NM_031198|Tcfec|21426|transcription factor EC
mm9_v1_chrX_+_131252542_131252558	0.820974	NKX2-3_NKX2-5.p2	AK019405|Armcx1|78248|armadillo repeat containing, X-linked 1	BC021410|Armcx1|78248|armadillo repeat containing, X-linked 1
mm9_v1_chr3_-_10208575_10208582	0.820725	NKX2-3_NKX2-5.p2	AK003143|Fabp4|11770|fatty acid binding protein 4, adipocyte	AK088535|Fabp4|11770|fatty acid binding protein 4, adipocyte	NM_024406|Fabp4|11770|fatty acid binding protein 4, adipocyte
mm9_v1_chr8_-_109407905_109408045	0.81673	NKX2-3_NKX2-5.p2	AK193837|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)
mm9_v1_chrX_+_156146532_156146595	0.815516	NKX2-3_NKX2-5.p2	AK030839|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_021389|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK004636|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK020782|Sh3kbp1|58194|SH3-domain kinase binding protein 1	BC052863|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr3_-_92819586_92819610	0.813198	NKX2-3_NKX2-5.p2	BC060280|Crct1|74175|cysteine-rich C-terminal 1	AK009010|Crct1|74175|cysteine-rich C-terminal 1	NM_028798|Crct1|74175|cysteine-rich C-terminal 1
mm9_v1_chr8_+_125628943_125629025	0.813043	NKX2-3_NKX2-5.p2	
mm9_v1_chr13_-_115248924_115248982	0.811559	NKX2-3_NKX2-5.p2	AK083556|Fst|14313|follistatin	NM_008046|Fst|14313|follistatin	BC144926|Fst|14313|follistatin	BC145945|Fst|14313|follistatin
mm9_v1_chr16_+_45093816_45093826	0.80419	NKX2-3_NKX2-5.p2	BC096487|Ccdc80|67896|coiled-coil domain containing 80
mm9_v1_chr13_-_38069696_38069810	0.803776	NKX2-3_NKX2-5.p2	
mm9_v1_chr6_-_127075853_127076093	0.798067	NKX2-3_NKX2-5.p2	AK193960|Ccnd2|12444|cyclin D2	AK011429|Ccnd2|12444|cyclin D2	AK009602|Ccnd2|12444|cyclin D2
mm9_v1_chr13_+_49678115_49678143	0.795795	NKX2-3_NKX2-5.p2	AB007848|Omd|27047|osteomodulin	NM_012050|Omd|27047|osteomodulin	BC095997|Omd|27047|osteomodulin
mm9_v1_chr19_+_9026020_9026327	0.794793	NKX2-3_NKX2-5.p2	AK199642|Mta2|23942|metastasis-associated gene family, member 2	AK219174|Mta2|23942|metastasis-associated gene family, member 2	AK195366|Mta2|23942|metastasis-associated gene family, member 2	AK209683|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chr15_-_42508294_42508522	0.793938	NKX2-3_NKX2-5.p2	U83509|Angpt1|11600|angiopoietin 1	BC067410|Angpt1|11600|angiopoietin 1	NM_009640|Angpt1|11600|angiopoietin 1	AK172868|Angpt1|11600|angiopoietin 1	AK012027|Angpt1|11600|angiopoietin 1	AK088439|Angpt1|11600|angiopoietin 1
mm9_v1_chr12_-_74147683_74147691	0.791662	NKX2-3_NKX2-5.p2	BC023304|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr11_-_69480763_69480942	0.790221	NKX2-3_NKX2-5.p2	
mm9_v1_chr3_-_88138354_88138379	0.785658	NKX2-3_NKX2-5.p2	AK009760|Tmem79|71913|transmembrane protein 79	NM_024246|Tmem79|71913|transmembrane protein 79
mm9_v1_chr15_-_76983985_76984241	0.78415	NKX2-3_NKX2-5.p2	AF387322|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659951|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659952|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659953|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ017388|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ017389|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	BC002124|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AF229055|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AK044929|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110828|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110829|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110830|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr9_-_44611055_44611072	0.78374	NKX2-3_NKX2-5.p2	AK149384|Ttc36|192653|tetratricopeptide repeat domain 36
mm9_v1_chr3_+_102847115_102847128	0.78256	NKX2-3_NKX2-5.p2	BC029058|Csde1|229663|cold shock domain containing E1, RNA binding
mm9_v1_chr18_+_80409068_80409205	0.777423	NKX2-3_NKX2-5.p2	AK183256|Txnl4a|27366|thioredoxin-like 4A
mm9_v1_chr19_-_36194284_36194373	0.773543	NKX2-3_NKX2-5.p2	AF041847|Ankrd1|107765|ankyrin repeat domain 1 (cardiac muscle)	BC037138|Ankrd1|107765|ankyrin repeat domain 1 (cardiac muscle)	AK009655|Ankrd1|107765|ankyrin repeat domain 1 (cardiac muscle)	AK146471|Ankrd1|107765|ankyrin repeat domain 1 (cardiac muscle)	AK146940|Ankrd1|107765|ankyrin repeat domain 1 (cardiac muscle)	AK009959|Ankrd1|107765|ankyrin repeat domain 1 (cardiac muscle)	AK146627|Ankrd1|107765|ankyrin repeat domain 1 (cardiac muscle)	NM_013468|Ankrd1|107765|ankyrin repeat domain 1 (cardiac muscle)	AK145944|Ankrd1|107765|ankyrin repeat domain 1 (cardiac muscle)
mm9_v1_chr14_-_21475679_21475701	0.768882	NKX2-3_NKX2-5.p2	AY013298|Myoz1|59011|myozenin 1	AJ005620|Myoz1|59011|myozenin 1
mm9_v1_chr18_+_69843588_69843609	0.768484	NKX2-3_NKX2-5.p2	AK017365|Tcf4|21413|transcription factor 4
mm9_v1_chr16_+_94914273_94914275	0.764255	NKX2-3_NKX2-5.p2	AK165966|Dyrk1a|13548|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	AK163136|Dyrk1a|13548|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
mm9_v1_chr11_+_67611772_67611789	0.763307	NKX2-3_NKX2-5.p2	NM_001013013|Dhrs7c|68460|dehydrogenase/reductase (SDR family) member 7C	AK003267|Dhrs7c|68460|dehydrogenase/reductase (SDR family) member 7C	BC039565|Dhrs7c|68460|dehydrogenase/reductase (SDR family) member 7C
mm9_v1_chr5_-_114292851_114293254	0.763225	NKX2-3_NKX2-5.p2	AK201602|Coro1c|23790|coronin, actin binding protein 1C
mm9_v1_chr4_+_116265582_116265626	0.759422	NKX2-3_NKX2-5.p2	BC002292|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1
mm9_v1_chr12_+_74224693_74224793	0.75929	NKX2-3_NKX2-5.p2	AK048499|Mnat1|17420|menage a trois 1	AK155859|Mnat1|17420|menage a trois 1	NM_008612|Mnat1|17420|menage a trois 1	AK008249|Mnat1|17420|menage a trois 1	BC089023|Mnat1|17420|menage a trois 1	BC115630|Mnat1|17420|menage a trois 1	BC115631|Mnat1|17420|menage a trois 1	AK157721|Mnat1|17420|menage a trois 1	AK008134|Mnat1|17420|menage a trois 1	AK053621|Mnat1|17420|menage a trois 1	AK011833|Mnat1|17420|menage a trois 1	AK029174|Mnat1|17420|menage a trois 1
mm9_v1_chr2_-_35972131_35972337	0.758452	NKX2-3_NKX2-5.p2	AK220096|Rbm18|67889|RNA binding motif protein 18
mm9_v1_chr14_+_32481114_32481230	0.758224	NKX2-3_NKX2-5.p2	AK189055|Btd|26363|biotinidase
mm9_v1_chr11_+_32646291_32646504	0.756533	NKX2-3_NKX2-5.p2	AK207541|Fbxw11|103583|F-box and WD-40 domain protein 11	AK219433|Fbxw11|103583|F-box and WD-40 domain protein 11	AK216067|Fbxw11|103583|F-box and WD-40 domain protein 11	AK210303|Fbxw11|103583|F-box and WD-40 domain protein 11	AK213659|Fbxw11|103583|F-box and WD-40 domain protein 11	AK215208|Fbxw11|103583|F-box and WD-40 domain protein 11
mm9_v1_chr3_+_68272097_68272120	0.753799	NKX2-3_NKX2-5.p2	AK083464|Schip1|30953|schwannomin interacting protein 1
mm9_v1_chr2_-_155771090_155771102	0.750765	NKX2-3_NKX2-5.p2	BC034546|Gdf5|14563|growth differentiation factor 5	NM_008109|Gdf5|14563|growth differentiation factor 5	U08337|Gdf5|14563|growth differentiation factor 5
mm9_v1_chr14_-_21475760_21475766	0.750559	NKX2-3_NKX2-5.p2	NM_021508|Myoz1|59011|myozenin 1
mm9_v1_chr15_+_36103768_36103779	0.750245	NKX2-3_NKX2-5.p2	NM_001039368|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	NM_023127|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K
mm9_v1_chrX_+_54032914_54032920	0.749462	NKX2-3_NKX2-5.p2	BC029024|Fhl1|14199|four and a half LIM domains 1
mm9_v1_chr14_-_56254424_56254541	0.749414	NKX2-3_NKX2-5.p2	AK202276|Ipo4|75751|importin 4	AF123388|Ipo4|75751|importin 4	AK018399|Ipo4|75751|importin 4	AK147086|Ipo4|75751|importin 4	AK142138|Ipo4|75751|importin 4	BC075690|Ipo4|75751|importin 4	AK171031|Ipo4|75751|importin 4	NM_024267|Ipo4|75751|importin 4	AK030490|Ipo4|75751|importin 4
mm9_v1_chr5_-_104058250_104058421	0.737918	NKX2-3_NKX2-5.p2	AJ583504|Slc10a6|75750|solute carrier family 10 (sodium/bile acid cotransporter family), member 6	BC139343|Slc10a6|75750|solute carrier family 10 (sodium/bile acid cotransporter family), member 6	BC139346|Slc10a6|75750|solute carrier family 10 (sodium/bile acid cotransporter family), member 6	BC127608|Slc10a6|75750|solute carrier family 10 (sodium/bile acid cotransporter family), member 6	AK018423|Slc10a6|75750|solute carrier family 10 (sodium/bile acid cotransporter family), member 6	NM_029415|Slc10a6|75750|solute carrier family 10 (sodium/bile acid cotransporter family), member 6
mm9_v1_chr1_+_109407998_109408121	0.736411	NKX2-3_NKX2-5.p2	AK081487|Serpinb2|18788|serine (or cysteine) peptidase inhibitor, clade B, member 2	NM_001174170|Serpinb2|18788|serine (or cysteine) peptidase inhibitor, clade B, member 2	NM_011111|Serpinb2|18788|serine (or cysteine) peptidase inhibitor, clade B, member 2	AK090049|Serpinb2|18788|serine (or cysteine) peptidase inhibitor, clade B, member 2
mm9_v1_chr17_-_35268696_35268782	0.732584	NKX2-3_NKX2-5.p2	AF207820|Apom|55938|apolipoprotein M	NM_018816|Apom|55938|apolipoprotein M	BC021597|Apom|55938|apolipoprotein M	AK004530|Apom|55938|apolipoprotein M
mm9_v1_chr11_+_116532973_116533009	0.730409	NKX2-3_NKX2-5.p2	AK007675|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene	AK013681|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene	AK037979|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene	BC055707|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene	AK088915|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene
mm9_v1_chr17_+_12571494_12571524	0.728546	NKX2-3_NKX2-5.p2	BC057186|Plg|18815|plasminogen	AK132254|Plg|18815|plasminogen	J04766|Plg|18815|plasminogen	AK040840|Plg|18815|plasminogen
mm9_v1_chr19_-_47044056_47044056	0.726578	NKX2-3_NKX2-5.p2	NM_001164365|Nt5c2|76952|5'-nucleotidase, cytosolic II
mm9_v1_chr17_+_47736273_47736367	0.725438	NKX2-3_NKX2-5.p2	AK191156|Ccnd3|12445|cyclin D3	AK196525|Ccnd3|12445|cyclin D3	AK196937|Ccnd3|12445|cyclin D3	AK201151|Ccnd3|12445|cyclin D3	AK208250|Ccnd3|12445|cyclin D3	AK209470|Ccnd3|12445|cyclin D3
mm9_v1_chr9_+_120868808_120869094	0.723272	NKX2-3_NKX2-5.p2	AK208830|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK209437|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK209047|Ctnnb1|12387|catenin (cadherin associated protein), beta 1
mm9_v1_chr10_+_98725871_98725972	0.721703	NKX2-3_NKX2-5.p2	AK009131|Dusp6|67603|dual specificity phosphatase 6	AK159146|Dusp6|67603|dual specificity phosphatase 6	AK159900|Dusp6|67603|dual specificity phosphatase 6
mm9_v1_chr7_-_29185514_29185554	0.718656	NKX2-3_NKX2-5.p2	AK133691|Samd4b|233033|sterile alpha motif domain containing 4B
mm9_v1_chr13_-_77230519_77230547	0.713735	NKX2-3_NKX2-5.p2	BC083095|Ankrd32|105377|ankyrin repeat domain 32
mm9_v1_chrM_-_13886_13905	0.711078	NKX2-3_NKX2-5.p2	
mm9_v1_chr19_+_9092973_9093058	0.708589	NKX2-3_NKX2-5.p2	AK003448|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)
mm9_v1_chr12_+_8928112_8928218	0.707661	NKX2-3_NKX2-5.p2	NM_008640|Laptm4a|17775|lysosomal-associated protein transmembrane 4A	U34259|Laptm4a|17775|lysosomal-associated protein transmembrane 4A
mm9_v1_chr1_+_196765079_196765114	0.707217	NKX2-3_NKX2-5.p2	AK044121|Cd34|12490|CD34 antigen	AK053874|Cd34|12490|CD34 antigen	AK051507|Cd34|12490|CD34 antigen	AK167329|Cd34|12490|CD34 antigen	AK167350|Cd34|12490|CD34 antigen	BC006607|Cd34|12490|CD34 antigen	AK089010|Cd34|12490|CD34 antigen
mm9_v1_chr10_+_79353650_79353664	0.707093	NKX2-3_NKX2-5.p2	AK143817|Cfd|11537|complement factor D (adipsin)	M11768|Cfd|11537|complement factor D (adipsin)
mm9_v1_chr9_-_37476762_37476806	0.70193	NKX2-3_NKX2-5.p2	AK036933|Panx3|208098|pannexin 3	BC052822|Panx3|208098|pannexin 3	AK028288|Panx3|208098|pannexin 3	AK014690|Panx3|208098|pannexin 3	NM_172454|Panx3|208098|pannexin 3
mm9_v1_chr18_+_61085303_61085326	0.699767	NKX2-3_NKX2-5.p2	BC031745|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr10_-_62666659_62666699	0.696894	NKX2-3_NKX2-5.p2	AK036458|Mypn|68802|myopalladin	AK220521|Mypn|68802|myopalladin	NM_182992|Mypn|68802|myopalladin
mm9_v1_chr5_-_87683812_87683841	0.691741	NKX2-3_NKX2-5.p2	BC019487|Ugt2b37|112417|UDP glucuronosyltransferase 2 family, polypeptide B37	NM_053215|Ugt2b37|112417|UDP glucuronosyltransferase 2 family, polypeptide B37	AK002736|Ugt2b37|112417|UDP glucuronosyltransferase 2 family, polypeptide B37
mm9_v1_chr6_-_87793459_87793650	0.688296	NKX2-3_NKX2-5.p2	AK211658|Cnbp|12785|cellular nucleic acid binding protein	BC003805|Cnbp|12785|cellular nucleic acid binding protein
mm9_v1_chr7_+_31278675_31278685	0.68712	NKX2-3_NKX2-5.p2	AK011039|Prodh2|56189|proline dehydrogenase (oxidase) 2	AK050141|Prodh2|56189|proline dehydrogenase (oxidase) 2	NM_019546|Prodh2|56189|proline dehydrogenase (oxidase) 2	U80019|Prodh2|56189|proline dehydrogenase (oxidase) 2	AK011020|Prodh2|56189|proline dehydrogenase (oxidase) 2
mm9_v1_chr10_+_126921038_126921212	0.686757	NKX2-3_NKX2-5.p2	BC023826|R3hdm2|71750|R3H domain containing 2
mm9_v1_chr3_-_98663713_98663719	0.686618	NKX2-3_NKX2-5.p2	AK146665|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	AK147114|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	NM_008293|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1
mm9_v1_chr4_+_106260649_106260683	0.685423	NKX2-3_NKX2-5.p2	AK010192|Dhcr24|74754|24-dehydrocholesterol reductase
mm9_v1_chr1_+_95405907_95405920	0.684659	NKX2-3_NKX2-5.p2	
mm9_v1_chr11_+_120094240_120094260	0.68202	NKX2-3_NKX2-5.p2	AK147250|Bahcc1|268515|BAH domain and coiled-coil containing 1	NM_198423|Bahcc1|268515|BAH domain and coiled-coil containing 1
mm9_v1_chr3_+_41419561_41419606	0.675812	NKX2-3_NKX2-5.p2	AK040146|Phf17|269424|PHD finger protein 17
mm9_v1_chr11_+_93905557_93905590	0.674409	NKX2-3_NKX2-5.p2	BC052058|Spag9|70834|sperm associated antigen 9	BC060100|Spag9|70834|sperm associated antigen 9	BC094670|Spag9|70834|sperm associated antigen 9
mm9_v1_chr4_-_43536259_43536276	0.67018	NKX2-3_NKX2-5.p2	M81086|Tpm2|22004|tropomyosin 2, beta	NM_009416|Tpm2|22004|tropomyosin 2, beta
mm9_v1_chr7_-_22045635_22045635	0.670104	NKX2-3_NKX2-5.p2	NM_001166757|Vmn1r124|670764|vomeronasal 1 receptor 124
mm9_v1_chr17_+_3482314_3482460	0.670099	NKX2-3_NKX2-5.p2	AK158489|Tiam2|24001|T-cell lymphoma invasion and metastasis 2
mm9_v1_chr9_+_92352215_92352231	0.669646	NKX2-3_NKX2-5.p2	AK035919|Plscr4|235527|phospholipid scramblase 4	AK045372|Plscr4|235527|phospholipid scramblase 4	AK165919|Plscr4|235527|phospholipid scramblase 4	NM_178711|Plscr4|235527|phospholipid scramblase 4	AK035878|Plscr4|235527|phospholipid scramblase 4
mm9_v1_chr17_-_71196116_71196116	0.669223	NKX2-3_NKX2-5.p2	NM_001164077|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chr4_+_97248556_97248685	0.666512	NKX2-3_NKX2-5.p2	D90173|Nfia|18027|nuclear factor I/A	AK048696|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene	AK139357|Nfia|18027|nuclear factor I/A	NM_001122952|Nfia|18027|nuclear factor I/A	AK051361|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene
mm9_v1_chr9_+_14305055_14305063	0.666416	NKX2-3_NKX2-5.p2	NM_023153|Cwc15|66070|CWC15 homolog (S. cerevisiae)
mm9_v1_chr1_+_196765124_196765159	0.665543	NKX2-3_NKX2-5.p2	S69293|Cd34|12490|CD34 antigen	BC066820|Cd34|12490|CD34 antigen	AK158452|Cd34|12490|CD34 antigen	S69299|Cd34|12490|CD34 antigen	S69301|Cd34|12490|CD34 antigen
mm9_v1_chr1_-_55044032_55044295	0.66321	NKX2-3_NKX2-5.p2	AK077993|Sf3b1|81898|splicing factor 3b, subunit 1	AK087700|Sf3b1|81898|splicing factor 3b, subunit 1
mm9_v1_chr14_+_32031041_32031060	0.662552	NKX2-3_NKX2-5.p2	AK129018|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	AK137463|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	AB127607|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	NM_001025379|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	BC115440|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G
mm9_v1_chr10_+_57857120_57857135	0.661331	NKX2-3_NKX2-5.p2	AK009390|Lims1|110829|LIM and senescent cell antigen-like domains 1	NM_001193303|Lims1|110829|LIM and senescent cell antigen-like domains 1	DQ003608|Lims1|110829|LIM and senescent cell antigen-like domains 1
mm9_v1_chr10_+_79353597_79353617	0.651695	NKX2-3_NKX2-5.p2	BC138778|Cfd|11537|complement factor D (adipsin)	BC138779|Cfd|11537|complement factor D (adipsin)	BC145412|Cfd|11537|complement factor D (adipsin)	NM_013459|Cfd|11537|complement factor D (adipsin)
mm9_v1_chr3_+_88342459_88342597	0.650731	NKX2-3_NKX2-5.p2	AK012557|Mex3a|72640|mex3 homolog A (C. elegans)
mm9_v1_chr6_+_33922645_33922791	0.65047	NKX2-3_NKX2-5.p2	
mm9_v1_chr16_+_45093784_45093803	0.650319	NKX2-3_NKX2-5.p2	AK144183|Ccdc80|67896|coiled-coil domain containing 80
mm9_v1_chr2_-_32279522_32279542	0.648825	NKX2-3_NKX2-5.p2	BC022114|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	BC019978|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm9_v1_chr10_+_59747208_59747231	0.648435	NKX2-3_NKX2-5.p2	AK149785|Psap|19156|prosaposin	NM_001146124|Psap|19156|prosaposin
mm9_v1_chr5_-_66000506_66000618	0.645149	NKX2-3_NKX2-5.p2	AK083707|B230308N11Rik|320060|RIKEN cDNA B230308N11 gene
mm9_v1_chr3_+_137949734_137949755	0.64488	NKX2-3_NKX2-5.p2	M22611|Adh1|11522|alcohol dehydrogenase 1 (class I)
mm9_v1_chr10_+_69388242_69388279	0.643363	NKX2-3_NKX2-5.p2	L40631|Ank3|11735|ankyrin 3, epithelial	NM_009670|Ank3|11735|ankyrin 3, epithelial	NM_170687|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr16_-_88751872_88751894	0.639694	NKX2-3_NKX2-5.p2	AF031485|Krtap13|16699|keratin associated protein 13	NM_010671|Krtap13|16699|keratin associated protein 13	BC063754|Krtap13|16699|keratin associated protein 13	AK003960|Krtap13|16699|keratin associated protein 13
mm9_v1_chr5_-_87853212_87853227	0.639092	NKX2-3_NKX2-5.p2	BC015272|Ugt2b38|100559|UDP glucuronosyltransferase 2 family, polypeptide B38	BC057169|Ugt2b38|100559|UDP glucuronosyltransferase 2 family, polypeptide B38	BC069923|Ugt2b38|100559|UDP glucuronosyltransferase 2 family, polypeptide B38	AK034801|Ugt2b38|100559|UDP glucuronosyltransferase 2 family, polypeptide B38	NM_133894|Ugt2b38|100559|UDP glucuronosyltransferase 2 family, polypeptide B38
mm9_v1_chr2_-_134380065_134380100	0.63816	NKX2-3_NKX2-5.p2	BC018587|Hao1|15112|hydroxyacid oxidase 1, liver	AF104312|Hao1|15112|hydroxyacid oxidase 1, liver	BC119535|Hao1|15112|hydroxyacid oxidase 1, liver	BC119536|Hao1|15112|hydroxyacid oxidase 1, liver	NM_010403|Hao1|15112|hydroxyacid oxidase 1, liver	AK149565|Hao1|15112|hydroxyacid oxidase 1, liver
mm9_v1_chr5_-_100392845_100392900	0.636142	NKX2-3_NKX2-5.p2	AK053251|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr18_+_37480034_37480222	0.63548	NKX2-3_NKX2-5.p2	AK028661|Pcdhb5|93876|protocadherin beta 5	NM_053130|Pcdhb5|93876|protocadherin beta 5	AK049825|Pcdhb5|93876|protocadherin beta 5	BC141147|Pcdhb5|93876|protocadherin beta 5	AY013787|Pcdhb5|93876|protocadherin beta 5
mm9_v1_chr18_-_35881144_35881144	0.62961	NKX2-3_NKX2-5.p2	AK157485|Ecscr|68545|endothelial cell-specific chemotaxis regulator	NM_001033141|Ecscr|68545|endothelial cell-specific chemotaxis regulator
mm9_v1_chr13_+_81022644_81022695	0.629516	NKX2-3_NKX2-5.p2	AK088288|Arrdc3|105171|arrestin domain containing 3	AK084951|Arrdc3|105171|arrestin domain containing 3	BC054844|Arrdc3|105171|arrestin domain containing 3	NM_001042591|Arrdc3|105171|arrestin domain containing 3	BC044762|Arrdc3|105171|arrestin domain containing 3	BC098474|Arrdc3|105171|arrestin domain containing 3	AK122499|Arrdc3|105171|arrestin domain containing 3
mm9_v1_chr12_-_74147698_74147707	0.625189	NKX2-3_NKX2-5.p2	AK131925|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	NM_009189|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	AK144753|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr3_+_41368846_41368849	0.622949	NKX2-3_NKX2-5.p2	AK129445|Phf17|269424|PHD finger protein 17
mm9_v1_chr5_-_143666425_143666452	0.617523	NKX2-3_NKX2-5.p2	
mm9_v1_chr3_-_153573930_153573930	0.617341	NKX2-3_NKX2-5.p2	NM_001163479|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit
mm9_v1_chr1_-_180260325_180260384	0.615659	NKX2-3_NKX2-5.p2	
mm9_v1_chr3_-_122241909_122241984	0.614907	NKX2-3_NKX2-5.p2	AK019185|Fnbp1l|214459|formin binding protein 1-like
mm9_v1_chr10_-_5734448_5734544	0.614605	NKX2-3_NKX2-5.p2	EU791538|Esr1|13982|estrogen receptor 1 (alpha)	AK036627|Esr1|13982|estrogen receptor 1 (alpha)	NM_007956|Esr1|13982|estrogen receptor 1 (alpha)	AJ272164|Esr1|13982|estrogen receptor 1 (alpha)	AK039911|Esr1|13982|estrogen receptor 1 (alpha)	AK041525|Esr1|13982|estrogen receptor 1 (alpha)	AK033270|Esr1|13982|estrogen receptor 1 (alpha)
mm9_v1_chrX_+_140100287_140100287	0.614071	NKX2-3_NKX2-5.p2	NM_001195049|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	U39738|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr5_+_90919758_90919765	0.612235	NKX2-3_NKX2-5.p2	AK075972|Afp|11576|alpha fetoprotein	AK076197|Afp|11576|alpha fetoprotein	AK146513|Afp|11576|alpha fetoprotein	AK146524|Afp|11576|alpha fetoprotein	AK168426|Afp|11576|alpha fetoprotein	AK168574|Afp|11576|alpha fetoprotein	AK168751|Afp|11576|alpha fetoprotein	AK169046|Afp|11576|alpha fetoprotein	AK169054|Afp|11576|alpha fetoprotein	AK010934|Afp|11576|alpha fetoprotein	AK076053|Afp|11576|alpha fetoprotein	AK145975|Afp|11576|alpha fetoprotein	AK168576|Afp|11576|alpha fetoprotein	AK168883|Afp|11576|alpha fetoprotein	AK169147|Afp|11576|alpha fetoprotein	AK167549|Afp|11576|alpha fetoprotein	V00743|Afp|11576|alpha fetoprotein
mm9_v1_chr5_+_116010796_116010949	0.610951	NKX2-3_NKX2-5.p2	BC030189|Rplp0|11837|ribosomal protein, large, P0	AK193996|Rplp0|11837|ribosomal protein, large, P0	AK205179|Rplp0|11837|ribosomal protein, large, P0
mm9_v1_chr5_+_65221116_65221144	0.610895	NKX2-3_NKX2-5.p2	AK036932|Klf3|16599|Kruppel-like factor 3 (basic)
mm9_v1_chr1_+_181891219_181891219	0.610651	NKX2-3_NKX2-5.p2	BC158017|Cdc42bpa|226751|CDC42 binding protein kinase alpha	BC158095|Cdc42bpa|226751|CDC42 binding protein kinase alpha	NM_001033285|Cdc42bpa|226751|CDC42 binding protein kinase alpha
mm9_v1_chr10_+_126857922_126857922	0.609596	NKX2-3_NKX2-5.p2	AK043545|R3hdm2|71750|R3H domain containing 2	NM_001168293|R3hdm2|71750|R3H domain containing 2	NM_027900|R3hdm2|71750|R3H domain containing 2
mm9_v1_chr6_+_125502979_125502996	0.609408	NKX2-3_NKX2-5.p2	AK044921|Vwf|22371|Von Willebrand factor homolog	AK083237|Vwf|22371|Von Willebrand factor homolog	AK164450|Vwf|22371|Von Willebrand factor homolog	DQ355287|Vwf|22371|Von Willebrand factor homolog	DQ355288|Vwf|22371|Von Willebrand factor homolog	NM_011708|Vwf|22371|Von Willebrand factor homolog
mm9_v1_chr5_+_130263548_130263603	0.608523	NKX2-3_NKX2-5.p2	AK199226|Gbas|14467|glioblastoma amplified sequence
mm9_v1_chr18_+_61747381_61747495	0.607974	NKX2-3_NKX2-5.p2	AK217508|Csnk1a1|93687|casein kinase 1, alpha 1	AK218260|Csnk1a1|93687|casein kinase 1, alpha 1	AK211333|Csnk1a1|93687|casein kinase 1, alpha 1
mm9_v1_chr2_+_91512033_91512158	0.604373	NKX2-3_NKX2-5.p2	AK083702|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)
mm9_v1_chr5_+_58109278_58109341	0.602579	NKX2-3_NKX2-5.p2	AK140356|Pcdh7|54216|protocadherin 7	AB006758|Pcdh7|54216|protocadherin 7
mm9_v1_chr3_+_66023884_66023904	0.597721	NKX2-3_NKX2-5.p2	X83601|Ptx3|19288|pentraxin related gene
mm9_v1_chr1_-_180259089_180259120	0.593025	NKX2-3_NKX2-5.p2	AK049600|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr3_+_103811134_103811169	0.588037	NKX2-3_NKX2-5.p2	
mm9_v1_chr7_-_21630003_21630003	0.587318	NKX2-3_NKX2-5.p2	NM_001166745|Vmn1r115|667273|vomeronasal 1 receptor 115
mm9_v1_chr11_-_99427891_99427943	0.586432	NKX2-3_NKX2-5.p2	D86424|Krtap3-1|69473|keratin associated protein 3-1	BC060278|Krtap3-1|69473|keratin associated protein 3-1	NM_023511|Krtap3-1|69473|keratin associated protein 3-1
mm9_v1_chr5_+_130292873_130292891	0.583846	NKX2-3_NKX2-5.p2	AK149757|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)
mm9_v1_chr3_+_144260300_144260351	0.581062	NKX2-3_NKX2-5.p2	AK205282|Sep15|93684|selenoprotein	AK213933|Sep15|93684|selenoprotein	AK218207|Sep15|93684|selenoprotein
mm9_v1_chr6_-_137519272_137519292	0.580776	NKX2-3_NKX2-5.p2	AK155022|Eps8|13860|epidermal growth factor receptor pathway substrate 8
mm9_v1_chr3_-_97628441_97628543	0.578615	NKX2-3_NKX2-5.p2	AK031066|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_001110163|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr2_+_74714444_74714447	0.577236	NKX2-3_NKX2-5.p2	AK212919|Mtx2|53375|metaxin 2
mm9_v1_chr13_-_53568111_53568148	0.576561	NKX2-3_NKX2-5.p2	AK131974|Msx2|17702|homeobox, msh-like 2	BC141132|Msx2|17702|homeobox, msh-like 2	AK133846|Msx2|17702|homeobox, msh-like 2	NM_013601|Msx2|17702|homeobox, msh-like 2
mm9_v1_chr11_-_51414445_51414449	0.576342	NKX2-3_NKX2-5.p2	
mm9_v1_chr10_+_97110043_97110069	0.575772	NKX2-3_NKX2-5.p2	AK137179|Epyc|13516|epiphycan	D78274|Epyc|13516|epiphycan
mm9_v1_chr8_-_44392289_44392387	0.575359	NKX2-3_NKX2-5.p2	BC064785|Zfp42|22702|zinc finger protein 42	BC098467|Zfp42|22702|zinc finger protein 42	BC053399|Zfp42|22702|zinc finger protein 42	M28382|Zfp42|22702|zinc finger protein 42	NM_009556|Zfp42|22702|zinc finger protein 42	AK141232|Zfp42|22702|zinc finger protein 42
mm9_v1_chr4_+_57867433_57867513	0.57461	NKX2-3_NKX2-5.p2	NM_001035533|Akap2|11641|A kinase (PRKA) anchor protein 2	AK182017|Akap2|11641|A kinase (PRKA) anchor protein 2	AK209944|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr6_+_123652838_123652838	0.57368	NKX2-3_NKX2-5.p2	NM_001104638|Vmn2r23|435916|vomeronasal 2, receptor 23
mm9_v1_chr9_+_31923720_31923720	0.573666	NKX2-3_NKX2-5.p2	NM_001195632|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr3_-_90193813_90193859	0.573499	NKX2-3_NKX2-5.p2	BC141134|Slc27a3|26568|solute carrier family 27 (fatty acid transporter), member 3	AK135190|Slc27a3|26568|solute carrier family 27 (fatty acid transporter), member 3	AJ577573|Slc27a3|26568|solute carrier family 27 (fatty acid transporter), member 3	NM_011988|Slc27a3|26568|solute carrier family 27 (fatty acid transporter), member 3	BC060052|Slc27a3|26568|solute carrier family 27 (fatty acid transporter), member 3
mm9_v1_chr12_-_105011767_105011793	0.567494	NKX2-3_NKX2-5.p2	M75718|Serpina1d|20703|serine (or cysteine) peptidase inhibitor, clade A, member 1D
mm9_v1_chr6_-_87931475_87931614	0.562604	NKX2-3_NKX2-5.p2	BC048709|H1fx|243529|H1 histone family, member X	NM_198622|H1fx|243529|H1 histone family, member X
mm9_v1_chr3_+_69525922_69526018	0.560733	NKX2-3_NKX2-5.p2	AK145248|Nmd3|97112|NMD3 homolog (S. cerevisiae)	AK088667|Nmd3|97112|NMD3 homolog (S. cerevisiae)	BC003842|Nmd3|97112|NMD3 homolog (S. cerevisiae)	NM_133787|Nmd3|97112|NMD3 homolog (S. cerevisiae)	AK198106|Nmd3|97112|NMD3 homolog (S. cerevisiae)	AK166283|Nmd3|97112|NMD3 homolog (S. cerevisiae)	AK143289|Nmd3|97112|NMD3 homolog (S. cerevisiae)
mm9_v1_chr8_+_111482660_111482698	0.559151	NKX2-3_NKX2-5.p2	AK031741|Zfhx3|11906|zinc finger homeobox 3
mm9_v1_chr2_+_51893618_51893676	0.556919	NKX2-3_NKX2-5.p2	AK139985|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6	NM_009398|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6	U83903|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6	BC021155|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6
mm9_v1_chr7_-_53086135_53086313	0.55498	NKX2-3_NKX2-5.p2	BC008121|Grwd1|101612|glutamate-rich WD repeat containing 1	BC083143|Grwd1|101612|glutamate-rich WD repeat containing 1	BC028896|Grwd1|101612|glutamate-rich WD repeat containing 1	NM_153419|Grwd1|101612|glutamate-rich WD repeat containing 1	AK077611|Grwd1|101612|glutamate-rich WD repeat containing 1	AB001539|Grwd1|101612|glutamate-rich WD repeat containing 1
mm9_v1_chr3_-_78949796_78949796	0.54991	NKX2-3_NKX2-5.p2	BC067056|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2	NM_001099624|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr11_+_20443168_20443285	0.548824	NKX2-3_NKX2-5.p2	AK147674|Sertad2|58172|SERTA domain containing 2	AK142268|Sertad2|58172|SERTA domain containing 2	NM_021372|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr8_+_91115856_91115922	0.545621	NKX2-3_NKX2-5.p2	AK192443|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AK193874|Nkd1|93960|naked cuticle 1 homolog (Drosophila)
mm9_v1_chr4_+_64785795_64785812	0.54561	NKX2-3_NKX2-5.p2	AF439513|Pappa|18491|pregnancy-associated plasma protein A	AF439514|Pappa|18491|pregnancy-associated plasma protein A
mm9_v1_chr2_+_131763454_131763725	0.545413	NKX2-3_NKX2-5.p2	AK215651|Prnp|19122|prion protein	AK205534|Prnp|19122|prion protein	AK213884|Prnp|19122|prion protein	AK206219|Prnp|19122|prion protein
mm9_v1_chr11_+_94189303_94189504	0.544635	NKX2-3_NKX2-5.p2	NM_027799|Ankrd40|71452|ankyrin repeat domain 40	NM_146024|Ankrd40|71452|ankyrin repeat domain 40	BC023133|Ankrd40|71452|ankyrin repeat domain 40
mm9_v1_chr6_+_17699145_17699592	0.544246	NKX2-3_NKX2-5.p2	AK079107|St7|64213|suppression of tumorigenicity 7	AK132103|St7|64213|suppression of tumorigenicity 7	AK151550|St7|64213|suppression of tumorigenicity 7	NM_001083315|St7|64213|suppression of tumorigenicity 7	NM_022332|St7|64213|suppression of tumorigenicity 7	BC108418|St7|64213|suppression of tumorigenicity 7	AF234884|St7|64213|suppression of tumorigenicity 7	AF234885|St7|64213|suppression of tumorigenicity 7	AY007794|St7|64213|suppression of tumorigenicity 7	AY007795|St7|64213|suppression of tumorigenicity 7	AK036248|St7|64213|suppression of tumorigenicity 7	BC060630|St7|64213|suppression of tumorigenicity 7	BC051429|St7|64213|suppression of tumorigenicity 7	AY551821|St7|64213|suppression of tumorigenicity 7	AY551822|St7|64213|suppression of tumorigenicity 7	CT010245|St7|64213|suppression of tumorigenicity 7
mm9_v1_chr10_-_86164623_86164759	0.543869	NKX2-3_NKX2-5.p2	AK031918|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK160827|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK215377|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK215142|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK210698|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK210697|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK205935|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK216702|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK218021|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK186620|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1
mm9_v1_chrX_+_53708015_53708070	0.542242	NKX2-3_NKX2-5.p2	NM_172779|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	AK031945|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	BC051161|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	AK083942|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	AK160627|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
mm9_v1_chr4_+_103237118_103237275	0.536215	NKX2-3_NKX2-5.p2	BC008258|Actg1|11465|actin, gamma, cytoplasmic 1	AK184769|Actg1|11465|actin, gamma, cytoplasmic 1
mm9_v1_chr2_+_112307393_112307430	0.535968	NKX2-3_NKX2-5.p2	AK045622|2900064A13Rik|73024|RIKEN cDNA 2900064A13 gene
mm9_v1_chr14_-_34195326_34195332	0.535809	NKX2-3_NKX2-5.p2	AK047936|Mapk8|26419|mitogen-activated protein kinase 8	AK053062|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr4_+_109015660_109015680	0.535584	NKX2-3_NKX2-5.p2	NM_001159964|Eps15|13858|epidermal growth factor receptor pathway substrate 15	AK083176|Eps15|13858|epidermal growth factor receptor pathway substrate 15
mm9_v1_chr6_-_122560002_122560015	0.529736	NKX2-3_NKX2-5.p2	BC103565|Gdf3|14562|growth differentiation factor 3	BC101963|Gdf3|14562|growth differentiation factor 3	BC101964|Gdf3|14562|growth differentiation factor 3	BC101965|Gdf3|14562|growth differentiation factor 3	AK082877|Gdf3|14562|growth differentiation factor 3	AK146174|Gdf3|14562|growth differentiation factor 3	AK167962|Gdf3|14562|growth differentiation factor 3
mm9_v1_chr1_+_162917586_162917638	0.528354	NKX2-3_NKX2-5.p2	BC033377|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	AK050295|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chr5_+_90919739_90919752	0.528154	NKX2-3_NKX2-5.p2	NM_007423|Afp|11576|alpha fetoprotein
mm9_v1_chr3_+_137880725_137880770	0.526957	NKX2-3_NKX2-5.p2	AK009600|Adh7|11529|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	NM_009626|Adh7|11529|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	AF331802|Adh7|11529|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	AF331803|Adh7|11529|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
mm9_v1_chr12_+_86474651_86474814	0.523496	NKX2-3_NKX2-5.p2	AK218097|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK201762|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK202210|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK205589|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK206354|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK207941|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK209363|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK210896|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK219425|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK186759|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
mm9_v1_chr11_+_20125239_20125296	0.520839	NKX2-3_NKX2-5.p2	AK078671|Rab1|19324|RAB1, member RAS oncogene family
mm9_v1_chr6_-_119988624_119988681	0.520814	NKX2-3_NKX2-5.p2	AK172935|Wnk1|232341|WNK lysine deficient protein kinase 1	BC055788|Wnk1|232341|WNK lysine deficient protein kinase 1	BC046916|Wnk1|232341|WNK lysine deficient protein kinase 1	AK133738|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_001185020|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_001185021|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_198703|Wnk1|232341|WNK lysine deficient protein kinase 1
mm9_v1_chr2_+_145648290_145648325	0.517981	NKX2-3_NKX2-5.p2	AK151332|Rin2|74030|Ras and Rab interactor 2
mm9_v1_chrX_+_139997806_139997811	0.517502	NKX2-3_NKX2-5.p2	NM_008778|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	BC053403|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr5_+_90919768_90919776	0.513268	NKX2-3_NKX2-5.p2	BC066206|Afp|11576|alpha fetoprotein
mm9_v1_chrX_-_91368713_91368747	0.511615	NKX2-3_NKX2-5.p2	L19714|Zfx|22764|zinc finger protein X-linked	AK145115|Zfx|22764|zinc finger protein X-linked	NM_001044386|Zfx|22764|zinc finger protein X-linked	NM_011768|Zfx|22764|zinc finger protein X-linked
mm9_v1_chr2_+_83564553_83564598	0.509309	NKX2-3_NKX2-5.p2	NM_008402|Itgav|16410|integrin alpha V
mm9_v1_chr13_+_113657736_113657889	0.507005	NKX2-3_NKX2-5.p2	
mm9_v1_chrX_-_163645313_163645419	0.506411	NKX2-3_NKX2-5.p2	AK205579|Tmsb4x|19241|thymosin, beta 4, X chromosome
mm9_v1_chr12_-_104976324_104976338	0.504248	NKX2-3_NKX2-5.p2	BC022109|Serpina1b|20701|serine (or cysteine) preptidase inhibitor, clade A, member 1B	BC025445|Serpina1b|20701|serine (or cysteine) preptidase inhibitor, clade A, member 1B
mm9_v1_chrX_+_159215702_159215711	0.503242	NKX2-3_NKX2-5.p2	AK213484|Rbbp7|245688|retinoblastoma binding protein 7
mm9_v1_chr6_-_5206215_5206292	0.500869	NKX2-3_NKX2-5.p2	L76193|Pon3|269823|paraoxonase 3	AK076090|Pon3|269823|paraoxonase 3	AK088572|Pon3|269823|paraoxonase 3	NM_173006|Pon3|269823|paraoxonase 3	BC099416|Pon3|269823|paraoxonase 3
mm9_v1_chr2_-_173053287_173053316	0.500675	NKX2-3_NKX2-5.p2	AK077382|Pmepa1|65112|prostate transmembrane protein, androgen induced 1
mm9_v1_chr10_+_126827366_126827366	0.500313	NKX2-3_NKX2-5.p2	NM_001168292|R3hdm2|71750|R3H domain containing 2
mm9_v1_chr15_+_28133520_28133520	0.500215	NKX2-3_NKX2-5.p2	AF466704|Dnahc5|110082|dynein, axonemal, heavy chain 5	AK054152|Dnahc5|110082|dynein, axonemal, heavy chain 5	NM_133365|Dnahc5|110082|dynein, axonemal, heavy chain 5
mm9_v1_chr6_-_38238095_38238171	0.498624	NKX2-3_NKX2-5.p2	AK045178|Zc3hav1l|209032|zinc finger CCCH-type, antiviral 1-like
mm9_v1_chr10_-_20444654_20444883	0.497352	NKX2-3_NKX2-5.p2	AF190639|Pde7b|29863|phosphodiesterase 7B	BC130267|Pde7b|29863|phosphodiesterase 7B	AK020137|Pde7b|29863|phosphodiesterase 7B	AK040876|Pde7b|29863|phosphodiesterase 7B	NM_013875|Pde7b|29863|phosphodiesterase 7B	AK035385|Pde7b|29863|phosphodiesterase 7B
mm9_v1_chr1_+_159388702_159388722	0.491911	NKX2-3_NKX2-5.p2	AK151310|BC026585|226527|cDNA sequence BC026585	BC026585|BC026585|226527|cDNA sequence BC026585	AK143913|BC026585|226527|cDNA sequence BC026585	NM_001033284|BC026585|226527|cDNA sequence BC026585
mm9_v1_chrX_-_45944937_45944938	0.489417	NKX2-3_NKX2-5.p2	BC051397|Zfp280c|208968|zinc finger protein 280C	NM_001166650|Zfp280c|208968|zinc finger protein 280C	BC028839|Zfp280c|208968|zinc finger protein 280C
mm9_v1_chr4_-_76240202_76240202	0.488611	NKX2-3_NKX2-5.p2	BC086654|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	NM_011211|Ptprd|19266|protein tyrosine phosphatase, receptor type, D
mm9_v1_chr5_-_136849232_136849238	0.488279	NKX2-3_NKX2-5.p2	AF004225|Cux1|13047|cut-like homeobox 1
mm9_v1_chr7_+_13615892_13615926	0.484915	NKX2-3_NKX2-5.p2	AK193916|Trim28|21849|tripartite motif-containing 28	AK194102|Trim28|21849|tripartite motif-containing 28	AK190398|Trim28|21849|tripartite motif-containing 28	AK177374|Trim28|21849|tripartite motif-containing 28	AK189444|Trim28|21849|tripartite motif-containing 28	AK190056|Trim28|21849|tripartite motif-containing 28	AK190280|Trim28|21849|tripartite motif-containing 28	AK192048|Trim28|21849|tripartite motif-containing 28	AK196455|Trim28|21849|tripartite motif-containing 28	AK196856|Trim28|21849|tripartite motif-containing 28
mm9_v1_chr3_+_102931478_102931478	0.482099	NKX2-3_NKX2-5.p2	BC060666|Dennd2c|329727|DENN/MADD domain containing 2C	NM_177857|Dennd2c|329727|DENN/MADD domain containing 2C
mm9_v1_chr10_+_80657435_80657438	0.479092	NKX2-3_NKX2-5.p2	AK084504|2310050B05Rik|69678|RIKEN cDNA 2310050B05 gene	AK136697|2310050B05Rik|69678|RIKEN cDNA 2310050B05 gene	AK009897|2310050B05Rik|69678|RIKEN cDNA 2310050B05 gene	AK033837|2310050B05Rik|69678|RIKEN cDNA 2310050B05 gene
mm9_v1_chr8_+_15057652_15057677	0.477299	NKX2-3_NKX2-5.p2	AJ001038|Myom2|17930|myomesin 2	NM_008664|Myom2|17930|myomesin 2	BC115722|Myom2|17930|myomesin 2	BC115834|Myom2|17930|myomesin 2	AK142174|Myom2|17930|myomesin 2
mm9_v1_chr9_+_118972535_118972604	0.4743	NKX2-3_NKX2-5.p2	BC022664|Vill|22351|villin-like	AK166652|Vill|22351|villin-like
mm9_v1_chr1_+_159436875_159436945	0.473011	NKX2-3_NKX2-5.p2	NM_033354|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	BC059194|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	AK173302|Sec16b|89867|SEC16 homolog B (S. cerevisiae)
mm9_v1_chr10_+_128236561_128236694	0.472457	NKX2-3_NKX2-5.p2	AK135651|Mmp19|58223|matrix metallopeptidase 19
mm9_v1_chr11_-_101323802_101323881	0.47056	NKX2-3_NKX2-5.p2	BC024586|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK181513|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK183725|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK199516|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)
mm9_v1_chr15_+_65703468_65703625	0.465702	NKX2-3_NKX2-5.p2	AK039483|Efr3a|76740|EFR3 homolog A (S. cerevisiae)
mm9_v1_chr3_-_157686385_157686385	0.464631	NKX2-3_NKX2-5.p2	NM_026989|Srsf11|69207|serine/arginine-rich splicing factor 11
mm9_v1_chr15_+_92427539_92427556	0.462517	NKX2-3_NKX2-5.p2	NM_001164594|Pdzrn4|239618|PDZ domain containing RING finger 4	AK135524|Pdzrn4|239618|PDZ domain containing RING finger 4
mm9_v1_chr17_+_71368860_71368930	0.461859	NKX2-3_NKX2-5.p2	AJ012072|Myom1|17929|myomesin 1	NM_001083934|Myom1|17929|myomesin 1	NM_010867|Myom1|17929|myomesin 1	Z22866|Myom1|17929|myomesin 1	AK052539|Myom1|17929|myomesin 1
mm9_v1_chr11_+_75565381_75565439	0.460384	NKX2-3_NKX2-5.p2	AX775993|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK192964|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK202856|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr5_-_138713960_138713994	0.459931	NKX2-3_NKX2-5.p2	AK132558|Gal3st4|330217|galactose-3-O-sulfotransferase 4	NM_001033416|Gal3st4|330217|galactose-3-O-sulfotransferase 4	AK138993|Gal3st4|330217|galactose-3-O-sulfotransferase 4
mm9_v1_chr4_+_122731563_122731731	0.458869	NKX2-3_NKX2-5.p2	AK188355|Trit1|66966|tRNA isopentenyltransferase 1	AK219389|Trit1|66966|tRNA isopentenyltransferase 1	AK189511|Trit1|66966|tRNA isopentenyltransferase 1
mm9_v1_chr7_+_22057197_22057197	0.458216	NKX2-3_NKX2-5.p2	NM_001166740|Vmn1r125|667215|vomeronasal 1 receptor 125
mm9_v1_chr16_+_49868005_49868080	0.45625	NKX2-3_NKX2-5.p2	BC009094|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm9_v1_chr18_+_80315134_80315153	0.455146	NKX2-3_NKX2-5.p2	AK010699|Pard6g|93737|par-6 partitioning defective 6 homolog gamma (C. elegans)
mm9_v1_chr2_+_16277963_16277989	0.454181	NKX2-3_NKX2-5.p2	AK019482|Plxdc2|67448|plexin domain containing 2	AK154921|Plxdc2|67448|plexin domain containing 2
mm9_v1_chr8_-_24301206_24301672	0.452883	NKX2-3_NKX2-5.p2	AK178773|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK182757|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK204634|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AY489184|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK188390|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	BC031767|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)
mm9_v1_chr2_+_70529064_70529358	0.452687	NKX2-3_NKX2-5.p2	AK205781|Gorasp2|70231|golgi reassembly stacking protein 2	AK188777|Gorasp2|70231|golgi reassembly stacking protein 2	AK208233|Gorasp2|70231|golgi reassembly stacking protein 2	AK209932|Gorasp2|70231|golgi reassembly stacking protein 2	AK205979|Gorasp2|70231|golgi reassembly stacking protein 2
mm9_v1_chr2_-_119980243_119980354	0.452227	NKX2-3_NKX2-5.p2	BC012272|Ehd4|98878|EH-domain containing 4	AK149760|Ehd4|98878|EH-domain containing 4	AK163835|Ehd4|98878|EH-domain containing 4	AK147186|Ehd4|98878|EH-domain containing 4	AK159235|Ehd4|98878|EH-domain containing 4	AK159597|Ehd4|98878|EH-domain containing 4	NM_133838|Ehd4|98878|EH-domain containing 4	AK166101|Ehd4|98878|EH-domain containing 4	AK169343|Ehd4|98878|EH-domain containing 4
mm9_v1_chr11_-_5703677_5703735	0.450717	NKX2-3_NKX2-5.p2	BC010750|Pgam2|56012|phosphoglycerate mutase 2	AK146703|Pgam2|56012|phosphoglycerate mutase 2	AK169019|Pgam2|56012|phosphoglycerate mutase 2	AF029843|Pgam2|56012|phosphoglycerate mutase 2
mm9_v1_chr6_-_51416921_51416984	0.449596	NKX2-3_NKX2-5.p2	BC059107|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr12_-_13227172_13227259	0.449101	NKX2-3_NKX2-5.p2	
mm9_v1_chr10_+_80644736_80644777	0.446032	NKX2-3_NKX2-5.p2	AK201283|Eef2|13629|eukaryotic translation elongation factor 2	AK189877|Eef2|13629|eukaryotic translation elongation factor 2	AK189936|Eef2|13629|eukaryotic translation elongation factor 2	AK190622|Eef2|13629|eukaryotic translation elongation factor 2	AK190628|Eef2|13629|eukaryotic translation elongation factor 2	AK190763|Eef2|13629|eukaryotic translation elongation factor 2	AK190784|Eef2|13629|eukaryotic translation elongation factor 2	AK190861|Eef2|13629|eukaryotic translation elongation factor 2	AK190927|Eef2|13629|eukaryotic translation elongation factor 2	AK191362|Eef2|13629|eukaryotic translation elongation factor 2	AK191366|Eef2|13629|eukaryotic translation elongation factor 2	AK191562|Eef2|13629|eukaryotic translation elongation factor 2	AK191622|Eef2|13629|eukaryotic translation elongation factor 2	AK191649|Eef2|13629|eukaryotic translation elongation factor 2	AK191693|Eef2|13629|eukaryotic translation elongation factor 2	AK191810|Eef2|13629|eukaryotic translation elongation factor 2	AK191929|Eef2|13629|eukaryotic translation elongation factor 2	AK192150|Eef2|13629|eukaryotic translation elongation factor 2	AK192166|Eef2|13629|eukaryotic translation elongation factor 2	AK192179|Eef2|13629|eukaryotic translation elongation factor 2	AK192372|Eef2|13629|eukaryotic translation elongation factor 2	AK192424|Eef2|13629|eukaryotic translation elongation factor 2	AK192757|Eef2|13629|eukaryotic translation elongation factor 2	AK192765|Eef2|13629|eukaryotic translation elongation factor 2	AK193012|Eef2|13629|eukaryotic translation elongation factor 2	AK193195|Eef2|13629|eukaryotic translation elongation factor 2	AK193267|Eef2|13629|eukaryotic translation elongation factor 2	AK193334|Eef2|13629|eukaryotic translation elongation factor 2	AK193679|Eef2|13629|eukaryotic translation elongation factor 2	AK193887|Eef2|13629|eukaryotic translation elongation factor 2	AK193930|Eef2|13629|eukaryotic translation elongation factor 2	AK193934|Eef2|13629|eukaryotic translation elongation factor 2	AK193935|Eef2|13629|eukaryotic translation elongation factor 2	AK193939|Eef2|13629|eukaryotic translation elongation factor 2	AK194344|Eef2|13629|eukaryotic translation elongation factor 2	AK195004|Eef2|13629|eukaryotic translation elongation factor 2	AK195059|Eef2|13629|eukaryotic translation elongation factor 2	AK195080|Eef2|13629|eukaryotic translation elongation factor 2	AK195098|Eef2|13629|eukaryotic translation elongation factor 2	AK195214|Eef2|13629|eukaryotic translation elongation factor 2	AK195454|Eef2|13629|eukaryotic translation elongation factor 2	AK195506|Eef2|13629|eukaryotic translation elongation factor 2	AK196079|Eef2|13629|eukaryotic translation elongation factor 2	AK196233|Eef2|13629|eukaryotic translation elongation factor 2	AK196287|Eef2|13629|eukaryotic translation elongation factor 2	AK196489|Eef2|13629|eukaryotic translation elongation factor 2	AK196549|Eef2|13629|eukaryotic translation elongation factor 2	AK196556|Eef2|13629|eukaryotic translation elongation factor 2	AK196849|Eef2|13629|eukaryotic translation elongation factor 2	AK196962|Eef2|13629|eukaryotic translation elongation factor 2	AK197222|Eef2|13629|eukaryotic translation elongation factor 2	AK197244|Eef2|13629|eukaryotic translation elongation factor 2	AK197312|Eef2|13629|eukaryotic translation elongation factor 2	AK197319|Eef2|13629|eukaryotic translation elongation factor 2	AK197355|Eef2|13629|eukaryotic translation elongation factor 2	AK197363|Eef2|13629|eukaryotic translation elongation factor 2	AK197549|Eef2|13629|eukaryotic translation elongation factor 2	AK197618|Eef2|13629|eukaryotic translation elongation factor 2	AK197705|Eef2|13629|eukaryotic translation elongation factor 2	AK197848|Eef2|13629|eukaryotic translation elongation factor 2	AK198166|Eef2|13629|eukaryotic translation elongation factor 2	AK198483|Eef2|13629|eukaryotic translation elongation factor 2	AK198569|Eef2|13629|eukaryotic translation elongation factor 2	AK198683|Eef2|13629|eukaryotic translation elongation factor 2	AK198891|Eef2|13629|eukaryotic translation elongation factor 2	AK199179|Eef2|13629|eukaryotic translation elongation factor 2	AK199404|Eef2|13629|eukaryotic translation elongation factor 2	AK199520|Eef2|13629|eukaryotic translation elongation factor 2	AK199588|Eef2|13629|eukaryotic translation elongation factor 2	AK199675|Eef2|13629|eukaryotic translation elongation factor 2	AK199703|Eef2|13629|eukaryotic translation elongation factor 2	AK199709|Eef2|13629|eukaryotic translation elongation factor 2	AK199751|Eef2|13629|eukaryotic translation elongation factor 2	AK199803|Eef2|13629|eukaryotic translation elongation factor 2	AK199810|Eef2|13629|eukaryotic translation elongation factor 2	AK200092|Eef2|13629|eukaryotic translation elongation factor 2	AK200307|Eef2|13629|eukaryotic translation elongation factor 2	AK200465|Eef2|13629|eukaryotic translation elongation factor 2	AK200510|Eef2|13629|eukaryotic translation elongation factor 2	AK200525|Eef2|13629|eukaryotic translation elongation factor 2	AK200843|Eef2|13629|eukaryotic translation elongation factor 2	AK201052|Eef2|13629|eukaryotic translation elongation factor 2	AK201117|Eef2|13629|eukaryotic translation elongation factor 2	AK201643|Eef2|13629|eukaryotic translation elongation factor 2	AK202077|Eef2|13629|eukaryotic translation elongation factor 2	AK202127|Eef2|13629|eukaryotic translation elongation factor 2	AK202201|Eef2|13629|eukaryotic translation elongation factor 2	AK202326|Eef2|13629|eukaryotic translation elongation factor 2	AK202401|Eef2|13629|eukaryotic translation elongation factor 2	AK202472|Eef2|13629|eukaryotic translation elongation factor 2	AK202485|Eef2|13629|eukaryotic translation elongation factor 2	AK202505|Eef2|13629|eukaryotic translation elongation factor 2	AK202849|Eef2|13629|eukaryotic translation elongation factor 2	AK202866|Eef2|13629|eukaryotic translation elongation factor 2	AK203391|Eef2|13629|eukaryotic translation elongation factor 2	AK204582|Eef2|13629|eukaryotic translation elongation factor 2	AK204590|Eef2|13629|eukaryotic translation elongation factor 2	AK204680|Eef2|13629|eukaryotic translation elongation factor 2	AK204768|Eef2|13629|eukaryotic translation elongation factor 2	AK204823|Eef2|13629|eukaryotic translation elongation factor 2	AK207046|Eef2|13629|eukaryotic translation elongation factor 2	AK211931|Eef2|13629|eukaryotic translation elongation factor 2	AK218458|Eef2|13629|eukaryotic translation elongation factor 2	AK192362|Eef2|13629|eukaryotic translation elongation factor 2	AK203693|Eef2|13629|eukaryotic translation elongation factor 2
mm9_v1_chr18_-_58169723_58169818	0.444226	NKX2-3_NKX2-5.p2	BC063774|Fbn2|14119|fibrillin 2
mm9_v1_chr10_+_127452219_127452252	0.441967	NKX2-3_NKX2-5.p2	J04620|Prim1|19075|DNA primase, p49 subunit	BC089544|Prim1|19075|DNA primase, p49 subunit	AK089063|Prim1|19075|DNA primase, p49 subunit	AK088557|Prim1|19075|DNA primase, p49 subunit	AK160831|Prim1|19075|DNA primase, p49 subunit
mm9_v1_chr3_-_103546233_103546253	0.438424	NKX2-3_NKX2-5.p2	AK031871|Hipk1|15257|homeodomain interacting protein kinase 1
mm9_v1_chr19_-_34952377_34952406	0.437878	NKX2-3_NKX2-5.p2	AF200357|Pank1|75735|pantothenate kinase 1	AK050222|Pank1|75735|pantothenate kinase 1	NM_023792|Pank1|75735|pantothenate kinase 1
mm9_v1_chr11_+_66915650_66915669	0.437661	NKX2-3_NKX2-5.p2	
mm9_v1_chr3_-_10208480_10208567	0.436988	NKX2-3_NKX2-5.p2	M28726|Fabp4|11770|fatty acid binding protein 4, adipocyte	U96149|Fabp9|21884|fatty acid binding protein 9, testis	CT010390|Fabp4|11770|fatty acid binding protein 4, adipocyte	K02109|Fabp4|11770|fatty acid binding protein 4, adipocyte	BC018558|Fabp4|11770|fatty acid binding protein 4, adipocyte	BC054426|Fabp4|11770|fatty acid binding protein 4, adipocyte
mm9_v1_chr13_+_49703402_49703439	0.436186	NKX2-3_NKX2-5.p2	AK028300|Ogn|18295|osteoglycin	AK160760|Ogn|18295|osteoglycin	AK053650|Ogn|18295|osteoglycin	NM_008760|Ogn|18295|osteoglycin
mm9_v1_chr18_+_37915375_37915594	0.436097	NKX2-3_NKX2-5.p2	BC064675|Pcdhga11|93723|protocadherin gamma subfamily A, 11	NM_033594|Pcdhga11|93723|protocadherin gamma subfamily A, 11	BC059837|Pcdhga11|93723|protocadherin gamma subfamily A, 11	AY013794|Pcdhga11|93723|protocadherin gamma subfamily A, 11
mm9_v1_chrX_+_97710893_97711108	0.435447	NKX2-3_NKX2-5.p2	AK218313|Igbp1|18518|immunoglobulin (CD79A) binding protein 1	AK210875|Igbp1|18518|immunoglobulin (CD79A) binding protein 1
mm9_v1_chr5_-_5265598_5265717	0.435188	NKX2-3_NKX2-5.p2	AK087398|Cdk14|18647|cyclin-dependent kinase 14	AK165149|Cdk14|18647|cyclin-dependent kinase 14	U62391|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr13_-_114453813_114453883	0.432488	NKX2-3_NKX2-5.p2	BC092376|Hspb3|56534|heat shock protein 3	AF203375|Hspb3|56534|heat shock protein 3	BC065388|Hspb3|56534|heat shock protein 3	AK009633|Hspb3|56534|heat shock protein 3	NM_019960|Hspb3|56534|heat shock protein 3
mm9_v1_chr13_-_117814079_117814204	0.431827	NKX2-3_NKX2-5.p2	AK150732|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK151510|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK152919|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK153169|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK153270|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK150113|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	BC021881|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK149889|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK149918|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK150208|Parp8|52552|poly (ADP-ribose) polymerase family, member 8
mm9_v1_chrM_+_13320_13486	0.429304	NKX2-3_NKX2-5.p2	
mm9_v1_chr12_+_39506844_39506916	0.428778	NKX2-3_NKX2-5.p2	NM_007960|Etv1|14009|ets variant gene 1	L10426|Etv1|14009|ets variant gene 1	AK144713|Etv1|14009|ets variant gene 1	BC005645|Etv1|14009|ets variant gene 1
mm9_v1_chr2_-_4544898_4544915	0.428453	NKX2-3_NKX2-5.p2	BC019370|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)
mm9_v1_chr7_+_31278689_31278695	0.425941	NKX2-3_NKX2-5.p2	AF222851|Prodh2|56189|proline dehydrogenase (oxidase) 2	BC018182|Prodh2|56189|proline dehydrogenase (oxidase) 2
mm9_v1_chr11_-_116711807_116712035	0.425013	NKX2-3_NKX2-5.p2	AK211203|Srsf2|20382|serine/arginine-rich splicing factor 2	AK207032|Srsf2|20382|serine/arginine-rich splicing factor 2	AK212169|Srsf2|20382|serine/arginine-rich splicing factor 2	AK220014|Srsf2|20382|serine/arginine-rich splicing factor 2	AF250134|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr5_+_104728299_104728323	0.424806	NKX2-3_NKX2-5.p2	NM_008318|Ibsp|15891|integrin binding sialoprotein	AK132371|Ibsp|15891|integrin binding sialoprotein	L23801|Ibsp|15891|integrin binding sialoprotein	BC045143|Ibsp|15891|integrin binding sialoprotein	AK162640|Ibsp|15891|integrin binding sialoprotein	L20232|Ibsp|15891|integrin binding sialoprotein
mm9_v1_chr5_-_138613028_138613124	0.424584	NKX2-3_NKX2-5.p2	BC066024|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	BC023232|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	BC065164|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK150059|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK150066|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK154052|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK133091|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK149913|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	D26091|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	NM_008568|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK144980|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)
mm9_v1_chr12_+_110834872_110834878	0.423103	NKX2-3_NKX2-5.p2	AK038654|1110006E14Rik|76286|RIKEN cDNA 1110006E14 gene
mm9_v1_chr17_+_35403130_35403196	0.4212	NKX2-3_NKX2-5.p2	K01446|H2-D1|14964|histocompatibility 2, D region locus 1
mm9_v1_chr19_-_39537540_39537568	0.420777	NKX2-3_NKX2-5.p2	AF047725|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	AK050051|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	BC150721|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	NM_010002|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38
mm9_v1_chr4_+_129526991_129527050	0.420513	NKX2-3_NKX2-5.p2	
mm9_v1_chr13_-_58494637_58494692	0.418672	NKX2-3_NKX2-5.p2	AK207611|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K
mm9_v1_chr6_-_137119016_137119017	0.417706	NKX2-3_NKX2-5.p2	NM_181988|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor	BC026463|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor
mm9_v1_chr13_-_36826245_36826363	0.416351	NKX2-3_NKX2-5.p2	AK161859|Nrn1|68404|neuritin 1	BC035531|Nrn1|68404|neuritin 1	NM_153529|Nrn1|68404|neuritin 1
mm9_v1_chr11_-_50108981_50109027	0.414685	NKX2-3_NKX2-5.p2	AK004422|Canx|12330|calnexin
mm9_v1_chr9_-_105372402_105372478	0.413666	NKX2-3_NKX2-5.p2	AK209035|Atp2c1|235574|ATPase, Ca++-sequestering	AK173154|Atp2c1|235574|ATPase, Ca++-sequestering	AJ551270|Atp2c1|235574|ATPase, Ca++-sequestering
mm9_v1_chr3_-_82853711_82853734	0.410421	NKX2-3_NKX2-5.p2	BC031715|Fgb|110135|fibrinogen beta chain	NM_181849|Fgb|110135|fibrinogen beta chain	AK168626|Fgb|110135|fibrinogen beta chain	AK011920|Fgb|110135|fibrinogen beta chain	AK011118|Fgb|110135|fibrinogen beta chain	AK146960|Fgb|110135|fibrinogen beta chain
mm9_v1_chr1_+_58052814_58052910	0.410116	NKX2-3_NKX2-5.p2	AK042448|Sgol2|68549|shugoshin-like 2 (S. pombe)	NM_199007|Sgol2|68549|shugoshin-like 2 (S. pombe)	BC023855|Sgol2|68549|shugoshin-like 2 (S. pombe)	AK079371|Sgol2|68549|shugoshin-like 2 (S. pombe)	BC052742|Sgol2|68549|shugoshin-like 2 (S. pombe)	AK017868|Sgol2|68549|shugoshin-like 2 (S. pombe)
mm9_v1_chr9_-_61918412_61918412	0.409902	NKX2-3_NKX2-5.p2	BC094587|Glce|93683|glucuronyl C5-epimerase	NM_033320|Glce|93683|glucuronyl C5-epimerase
mm9_v1_chr14_+_27813547_27813547	0.403575	NKX2-3_NKX2-5.p2	NM_010420|Hesx1|15209|homeobox gene expressed in ES cells	U40720|Hesx1|15209|homeobox gene expressed in ES cells
mm9_v1_chr18_+_35966147_35966251	0.403403	NKX2-3_NKX2-5.p2	AK075844|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2
mm9_v1_chr4_-_120861138_120861138	0.402883	NKX2-3_NKX2-5.p2	NM_001081013|Rlf|109263|rearranged L-myc fusion sequence
mm9_v1_chr5_-_5265981_5266073	0.400753	NKX2-3_NKX2-5.p2	AK083269|Cdk14|18647|cyclin-dependent kinase 14	AK139386|Cdk14|18647|cyclin-dependent kinase 14	BC068134|Cdk14|18647|cyclin-dependent kinase 14	AK138437|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr16_+_25802001_25802145	0.400316	NKX2-3_NKX2-5.p2	AK048623|Trp63|22061|transformation related protein 63	BC092537|Trp63|22061|transformation related protein 63	NM_001127262|Trp63|22061|transformation related protein 63	NM_001127263|Trp63|22061|transformation related protein 63	NM_001127264|Trp63|22061|transformation related protein 63	NM_001127265|Trp63|22061|transformation related protein 63	NM_011641|Trp63|22061|transformation related protein 63	AK137253|Trp63|22061|transformation related protein 63	BC090649|Trp63|22061|transformation related protein 63	AB010152|Trp63|22061|transformation related protein 63	AF075437|Trp63|22061|transformation related protein 63	AF075438|Trp63|22061|transformation related protein 63	AF075439|Trp63|22061|transformation related protein 63
mm9_v1_chr10_-_126978704_126978744	0.399591	NKX2-3_NKX2-5.p2	BC043675|Lrp1|16971|low density lipoprotein receptor-related protein 1
mm9_v1_chr2_+_110437454_110437527	0.398651	NKX2-3_NKX2-5.p2	AF529222|Slc5a12|241612|solute carrier family 5 (sodium/glucose cotransporter), member 12	NM_001003915|Slc5a12|241612|solute carrier family 5 (sodium/glucose cotransporter), member 12	NM_001177624|Slc5a12|241612|solute carrier family 5 (sodium/glucose cotransporter), member 12	AK085356|Slc5a12|241612|solute carrier family 5 (sodium/glucose cotransporter), member 12	AK128951|Slc5a12|241612|solute carrier family 5 (sodium/glucose cotransporter), member 12	AK143967|Slc5a12|241612|solute carrier family 5 (sodium/glucose cotransporter), member 12	AK165419|Slc5a12|241612|solute carrier family 5 (sodium/glucose cotransporter), member 12	AK085335|Slc5a12|241612|solute carrier family 5 (sodium/glucose cotransporter), member 12	AK144004|Slc5a12|241612|solute carrier family 5 (sodium/glucose cotransporter), member 12	BC141255|Slc5a12|241612|solute carrier family 5 (sodium/glucose cotransporter), member 12
mm9_v1_chr10_+_98725858_98725868	0.397743	NKX2-3_NKX2-5.p2	AK088665|Dusp6|67603|dual specificity phosphatase 6	AK005062|Dusp6|67603|dual specificity phosphatase 6	AK088468|Dusp6|67603|dual specificity phosphatase 6	AK148192|Dusp6|67603|dual specificity phosphatase 6	AK159502|Dusp6|67603|dual specificity phosphatase 6	NM_026268|Dusp6|67603|dual specificity phosphatase 6	AK151126|Dusp6|67603|dual specificity phosphatase 6	AK152773|Dusp6|67603|dual specificity phosphatase 6
mm9_v1_chr12_+_110782654_110782752	0.39654	NKX2-3_NKX2-5.p2	BC024818|Meg3|17263|maternally expressed 3
mm9_v1_chr13_-_76081244_76081314	0.393635	NKX2-3_NKX2-5.p2	BC005664|Rhobtb3|73296|Rho-related BTB domain containing 3	BC050836|Rhobtb3|73296|Rho-related BTB domain containing 3	NM_028493|Rhobtb3|73296|Rho-related BTB domain containing 3	AK129234|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chrX_-_22797942_22797952	0.392896	NKX2-3_NKX2-5.p2	AK013399|Klhl13|67455|kelch-like 13 (Drosophila)
mm9_v1_chr10_-_87937335_87937390	0.388329	NKX2-3_NKX2-5.p2	AK080245|Chpt1|212862|choline phosphotransferase 1
mm9_v1_chr5_-_87355527_87355556	0.38604	NKX2-3_NKX2-5.p2	BC027200|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	NM_152811|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	AK004971|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	AK050435|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1
mm9_v1_chr9_-_96632093_96632093	0.385576	NKX2-3_NKX2-5.p2	AK044467|Zbtb38|245007|zinc finger and BTB domain containing 38	NM_175537|Zbtb38|245007|zinc finger and BTB domain containing 38
mm9_v1_chr6_+_146591082_146591141	0.384559	NKX2-3_NKX2-5.p2	AK009742|Med21|108098|mediator complex subunit 21	AK012217|Med21|108098|mediator complex subunit 21	NM_025315|Med21|108098|mediator complex subunit 21	AK014428|Med21|108098|mediator complex subunit 21	AK019417|Med21|108098|mediator complex subunit 21	BC012286|Med21|108098|mediator complex subunit 21
mm9_v1_chr5_+_88203590_88203597	0.381538	NKX2-3_NKX2-5.p2	AK164738|Csn1s2a|12993|casein alpha s2-like A	D10215|Csn1s2a|12993|casein alpha s2-like A	NM_007785|Csn1s2a|12993|casein alpha s2-like A	AK142688|Csn1s2a|12993|casein alpha s2-like A
mm9_v1_chr9_+_96159666_96159703	0.378615	NKX2-3_NKX2-5.p2	NM_001184710|Tfdp2|211586|transcription factor Dp 2	NM_001184711|Tfdp2|211586|transcription factor Dp 2	AK158829|Tfdp2|211586|transcription factor Dp 2	BC092230|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr8_+_86247034_86247066	0.378168	NKX2-3_NKX2-5.p2	
mm9_v1_chr8_-_67171805_67171871	0.376112	NKX2-3_NKX2-5.p2	AK047891|Cpe|12876|carboxypeptidase E	BC010197|Cpe|12876|carboxypeptidase E	NM_013494|Cpe|12876|carboxypeptidase E	AK160097|Cpe|12876|carboxypeptidase E
mm9_v1_chr13_+_23931302_23931497	0.374933	NKX2-3_NKX2-5.p2	NM_001164743|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3	NM_134069|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3	AK128896|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3	AK143896|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3	BC024459|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3	BC018252|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3	AK165505|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3	BC034179|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3	BC034183|Slc17a3|105355|solute carrier family 17 (sodium phosphate), member 3
mm9_v1_chr5_+_91456489_91456542	0.374772	NKX2-3_NKX2-5.p2	BC119291|Epgn|71920|epithelial mitogen	BC119293|Epgn|71920|epithelial mitogen	BC145041|Epgn|71920|epithelial mitogen	AJ291391|Epgn|71920|epithelial mitogen	NM_053087|Epgn|71920|epithelial mitogen
mm9_v1_chr1_+_162917640_162917674	0.372934	NKX2-3_NKX2-5.p2	BC011165|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	S47225|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chr6_-_122287014_122287032	0.372624	NKX2-3_NKX2-5.p2	U63386|Phc1|13619|polyhomeotic-like 1 (Drosophila)	NM_001042623|Phc1|13619|polyhomeotic-like 1 (Drosophila)	NM_007905|Phc1|13619|polyhomeotic-like 1 (Drosophila)
mm9_v1_chr8_-_87889165_87889245	0.372456	NKX2-3_NKX2-5.p2	EU403565|Mylk3|213435|myosin light chain kinase 3	BC137983|Mylk3|213435|myosin light chain kinase 3	BC145079|Mylk3|213435|myosin light chain kinase 3	AK146683|Mylk3|213435|myosin light chain kinase 3	NM_175441|Mylk3|213435|myosin light chain kinase 3	AK052858|Mylk3|213435|myosin light chain kinase 3
mm9_v1_chr1_-_170085798_170085873	0.372285	NKX2-3_NKX2-5.p2	AK080184|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK032161|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK043495|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK085198|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr10_+_87322774_87322795	0.37215	NKX2-3_NKX2-5.p2	AK038119|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr10_+_80644982_80645055	0.371958	NKX2-3_NKX2-5.p2	
mm9_v1_chr5_-_98904692_98904727	0.371306	NKX2-3_NKX2-5.p2	
mm9_v1_chr5_+_43907004_43907024	0.371203	NKX2-3_NKX2-5.p2	AK078818|C1qtnf7|109323|C1q and tumor necrosis factor related protein 7
mm9_v1_chr10_+_42550365_42550378	0.370157	NKX2-3_NKX2-5.p2	AK017703|Sec63|140740|SEC63-like (S. cerevisiae)
mm9_v1_chr5_+_43906796_43906826	0.369541	NKX2-3_NKX2-5.p2	AK017441|C1qtnf7|109323|C1q and tumor necrosis factor related protein 7	NM_001135172|C1qtnf7|109323|C1q and tumor necrosis factor related protein 7	BC090967|C1qtnf7|109323|C1q and tumor necrosis factor related protein 7
mm9_v1_chr2_-_155984800_155984951	0.367479	NKX2-3_NKX2-5.p2	AK134091|Rbm39|170791|RNA binding motif protein 39
mm9_v1_chr12_-_105011795_105011804	0.367236	NKX2-3_NKX2-5.p2	AK002537|Serpina1d|20703|serine (or cysteine) peptidase inhibitor, clade A, member 1D
mm9_v1_chr14_-_70107206_70107408	0.367184	NKX2-3_NKX2-5.p2	BC052536|R3hcc1|71843|R3H domain and coiled-coil containing 1	BC059860|R3hcc1|71843|R3H domain and coiled-coil containing 1	AK032854|R3hcc1|71843|R3H domain and coiled-coil containing 1	AK156843|R3hcc1|71843|R3H domain and coiled-coil containing 1	NM_001146012|R3hcc1|71843|R3H domain and coiled-coil containing 1
mm9_v1_chr7_+_152024499_152024558	0.367157	NKX2-3_NKX2-5.p2	AK133901|Fgf3|14174|fibroblast growth factor 3	X52014|Fgf3|14174|fibroblast growth factor 3	NM_008007|Fgf3|14174|fibroblast growth factor 3	BC117059|Fgf3|14174|fibroblast growth factor 3	BC117061|Fgf3|14174|fibroblast growth factor 3
mm9_v1_chr1_+_58086831_58086847	0.36678	NKX2-3_NKX2-5.p2	BC026132|Aox1|11761|aldehyde oxidase 1	AF076216|Aox1|11761|aldehyde oxidase 1
mm9_v1_chrX_-_99383709_99383709	0.363333	NKX2-3_NKX2-5.p2	BC106152|Rps4x|20102|ribosomal protein S4, X-linked	M73436|Rps4x|20102|ribosomal protein S4, X-linked	NM_009094|Rps4x|20102|ribosomal protein S4, X-linked
mm9_v1_chr10_+_99478457_99478639	0.361933	NKX2-3_NKX2-5.p2	AK018777|Kitl|17311|kit ligand	NM_013598|Kitl|17311|kit ligand	U44725|Kitl|17311|kit ligand	AK134301|Kitl|17311|kit ligand	AK041961|Kitl|17311|kit ligand	AK165233|Kitl|17311|kit ligand	BC011322|Kitl|17311|kit ligand	M57647|Kitl|17311|kit ligand	S40364|Kitl|17311|kit ligand	S40534|Kitl|17311|kit ligand	S40536|Kitl|17311|kit ligand	M64262|Kitl|17311|kit ligand	X95379|Kitl|17311|kit ligand	X95380|Kitl|17311|kit ligand	X95381|Kitl|17311|kit ligand	X99322|Kitl|17311|kit ligand	Y10287|Kitl|17311|kit ligand	M59915|Kitl|17311|kit ligand
mm9_v1_chr11_-_99412144_99412178	0.361522	NKX2-3_NKX2-5.p2	BC120760|Krtap3-3|66380|keratin associated protein 3-3	BC120762|Krtap3-3|66380|keratin associated protein 3-3	AK009410|Krtap3-3|66380|keratin associated protein 3-3	AK010142|Krtap3-3|66380|keratin associated protein 3-3	NM_025524|Krtap3-3|66380|keratin associated protein 3-3	AK009052|Krtap3-3|66380|keratin associated protein 3-3
mm9_v1_chr10_+_86984539_86984647	0.3602	NKX2-3_NKX2-5.p2	NM_008777|Pah|18478|phenylalanine hydroxylase
mm9_v1_chr2_+_16277924_16277950	0.359853	NKX2-3_NKX2-5.p2	AK035165|Plxdc2|67448|plexin domain containing 2	AK004640|Plxdc2|67448|plexin domain containing 2	NM_026162|Plxdc2|67448|plexin domain containing 2
mm9_v1_chrX_+_150158113_150158178	0.358836	NKX2-3_NKX2-5.p2	AK008724|2210013O21Rik|70123|RIKEN cDNA 2210013O21 gene
mm9_v1_chr16_+_37580303_37580398	0.358829	NKX2-3_NKX2-5.p2	BC024369|Hgd|15233|homogentisate 1, 2-dioxygenase	BC037628|Hgd|15233|homogentisate 1, 2-dioxygenase	AK050193|Hgd|15233|homogentisate 1, 2-dioxygenase	BC044758|Hgd|15233|homogentisate 1, 2-dioxygenase	AK002584|Hgd|15233|homogentisate 1, 2-dioxygenase
mm9_v1_chr13_+_83803830_83803849	0.358749	NKX2-3_NKX2-5.p2	AK044589|Mef2c|17260|myocyte enhancer factor 2C
mm9_v1_chr11_+_69812965_69813148	0.355698	NKX2-3_NKX2-5.p2	Y17676|Phf23|78246|PHD finger protein 23
mm9_v1_chr3_-_144761960_144762069	0.352418	NKX2-3_NKX2-5.p2	AY161007|Clca5|229933|chloride channel calcium activated 5	AK048276|Clca5|229933|chloride channel calcium activated 5	AK028704|Clca5|229933|chloride channel calcium activated 5	NM_178697|Clca5|229933|chloride channel calcium activated 5	BC096379|Clca5|229933|chloride channel calcium activated 5	AK035512|Clca5|229933|chloride channel calcium activated 5
mm9_v1_chr4_-_82151180_82151288	0.351574	NKX2-3_NKX2-5.p2	AK034793|Nfib|18028|nuclear factor I/B	Y07686|Nfib|18028|nuclear factor I/B	AK146480|Nfib|18028|nuclear factor I/B	NM_001113209|Nfib|18028|nuclear factor I/B	NM_001113210|Nfib|18028|nuclear factor I/B	NM_008687|Nfib|18028|nuclear factor I/B	AK034261|Nfib|18028|nuclear factor I/B	AK087480|Nfib|18028|nuclear factor I/B	AK084941|Nfib|18028|nuclear factor I/B
mm9_v1_chr17_-_65929913_65929945	0.348227	NKX2-3_NKX2-5.p2	
mm9_v1_chr15_-_97662101_97662197	0.34761	NKX2-3_NKX2-5.p2	BC057332|Hdac7|56233|histone deacetylase 7	NM_019572|Hdac7|56233|histone deacetylase 7	AY943912|Hdac7|56233|histone deacetylase 7
mm9_v1_chr4_-_3761538_3761694	0.347103	NKX2-3_NKX2-5.p2	AK150667|Rps20|67427|ribosomal protein S20
mm9_v1_chr6_+_121195885_121196041	0.346146	NKX2-3_NKX2-5.p2	AK151011|Usp18|24110|ubiquitin specific peptidase 18	AK151260|Usp18|24110|ubiquitin specific peptidase 18	AK151722|Usp18|24110|ubiquitin specific peptidase 18	NM_011909|Usp18|24110|ubiquitin specific peptidase 18	AK149772|Usp18|24110|ubiquitin specific peptidase 18	AK004296|Usp18|24110|ubiquitin specific peptidase 18	AK153312|Usp18|24110|ubiquitin specific peptidase 18	AK152034|Usp18|24110|ubiquitin specific peptidase 18	AK152574|Usp18|24110|ubiquitin specific peptidase 18	AF069502|Usp18|24110|ubiquitin specific peptidase 18	BC138562|Usp18|24110|ubiquitin specific peptidase 18	BC138577|Usp18|24110|ubiquitin specific peptidase 18
mm9_v1_chr2_+_174170886_174171016	0.345527	NKX2-3_NKX2-5.p2	AK178212|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK182236|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK182338|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK183674|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK186374|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr3_-_27795287_27795289	0.345484	NKX2-3_NKX2-5.p2	AK053134|Tmem212|208613|transmembrane protein 212	BC119391|Tmem212|208613|transmembrane protein 212	BC119393|Tmem212|208613|transmembrane protein 212	NM_001164437|Tmem212|208613|transmembrane protein 212
mm9_v1_chr12_-_52847096_52847142	0.341441	NKX2-3_NKX2-5.p2	BC010205|Hectd1|207304|HECT domain containing 1
mm9_v1_chr7_-_139749889_139749896	0.338613	NKX2-3_NKX2-5.p2	
mm9_v1_chr12_-_104976382_104976400	0.330925	NKX2-3_NKX2-5.p2	NM_009244|Serpina1b|20701|serine (or cysteine) preptidase inhibitor, clade A, member 1B
mm9_v1_chr7_-_4116102_4116147	0.330034	NKX2-3_NKX2-5.p2	AF102773|Cdc42ep5|58804|CDC42 effector protein (Rho GTPase binding) 5	AF164119|Cdc42ep5|58804|CDC42 effector protein (Rho GTPase binding) 5	BC006758|Cdc42ep5|58804|CDC42 effector protein (Rho GTPase binding) 5
mm9_v1_chr1_-_13117243_13117243	0.329031	NKX2-3_NKX2-5.p2	AK134292|Prdm14|383491|PR domain containing 14	NM_001081209|Prdm14|383491|PR domain containing 14
mm9_v1_chrX_+_20276894_20276951	0.327966	NKX2-3_NKX2-5.p2	AK191787|Cdk16|18555|cyclin-dependent kinase 16	AK206138|Cdk16|18555|cyclin-dependent kinase 16	AK208421|Cdk16|18555|cyclin-dependent kinase 16	AK215824|Cdk16|18555|cyclin-dependent kinase 16
mm9_v1_chr16_-_38445988_38446143	0.326222	NKX2-3_NKX2-5.p2	AK003751|Adprh|11544|ADP-ribosylarginine hydrolase
mm9_v1_chr7_-_22331108_22331108	0.325718	NKX2-3_NKX2-5.p2	NM_001166746|Vmn1r111|667292|vomeronasal 1 receptor 111	NM_001166839|Gm4172|100043016|predicted gene 4172	NM_001167168|Gm4220|100043088|predicted gene 4220	NM_001167169|Gm4179|100043029|predicted gene 4179
mm9_v1_chr19_+_23241546_23241602	0.323364	NKX2-3_NKX2-5.p2	AK009928|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr18_-_9995729_9995838	0.323316	NKX2-3_NKX2-5.p2	AK206781|Usp14|59025|ubiquitin specific peptidase 14	AK209109|Usp14|59025|ubiquitin specific peptidase 14
mm9_v1_chr1_-_170085342_170085390	0.32318	NKX2-3_NKX2-5.p2	AK083616|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr3_-_75073981_75073999	0.32171	NKX2-3_NKX2-5.p2	AF251276|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2	AK007347|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2	AK008931|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2	NM_026460|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2
mm9_v1_chr16_+_88759091_88759109	0.321194	NKX2-3_NKX2-5.p2	AK009607|2310034C09Rik|117172|RIKEN cDNA 2310034C09 gene	NM_054100|2310034C09Rik|117172|RIKEN cDNA 2310034C09 gene	BC064816|2310034C09Rik|117172|RIKEN cDNA 2310034C09 gene
mm9_v1_chr13_-_73815446_73815470	0.317595	NKX2-3_NKX2-5.p2	BC010748|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AF075262|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AF075263|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AF075264|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AF075265|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AF075266|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AF075267|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AK085258|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AK085473|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	AK128907|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	NM_001040692|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	NM_001136087|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	NM_001168643|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	NM_001168644|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	NM_001168645|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18	NM_001168646|Slc6a18|22598|solute carrier family 6 (neurotransmitter transporter), member 18
mm9_v1_chr2_+_145647868_145648056	0.314333	NKX2-3_NKX2-5.p2	AK152893|Rin2|74030|Ras and Rab interactor 2	AK150680|Rin2|74030|Ras and Rab interactor 2
mm9_v1_chr7_-_20819176_20819176	0.311875	NKX2-3_NKX2-5.p2	NM_001166742|Vmn1r118|667259|vomeronasal 1 receptor 118	NM_001167150|Gm8453|667094|predicted gene 8453	NM_001167151|Gm4498|100043523|predicted gene 4498
mm9_v1_chr9_-_58050340_58050340	0.309522	NKX2-3_NKX2-5.p2	NM_001161538|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2
mm9_v1_chr13_+_94077988_94077988	0.308303	NKX2-3_NKX2-5.p2	AY137385|Homer1|26556|homer homolog 1 (Drosophila)	NM_152134|Homer1|26556|homer homolog 1 (Drosophila)
mm9_v1_chr3_+_137004089_137004128	0.307416	NKX2-3_NKX2-5.p2	AB034693|Emcn|59308|endomucin	AF060883|Emcn|59308|endomucin	AK164422|Emcn|59308|endomucin
mm9_v1_chr6_-_124181801_124181801	0.305512	NKX2-3_NKX2-5.p2	NM_001104642|Vmn2r27|232367|vomeronasal 2, receptor27
mm9_v1_chr3_-_95558736_95558899	0.304733	NKX2-3_NKX2-5.p2	AK187935|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	AK164825|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	AK088675|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	BC147501|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	AK011540|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	BC008995|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	AK168075|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	AK142685|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	AK080690|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	AK164589|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	NM_001163617|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	NM_001163618|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	NM_001163619|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	NM_027931|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)
mm9_v1_chr19_-_34952328_34952347	0.303388	NKX2-3_NKX2-5.p2	BC023496|Pank1|75735|pantothenate kinase 1
mm9_v1_chr6_+_38868942_38869113	0.302348	NKX2-3_NKX2-5.p2	BC029014|Tbxas1|21391|thromboxane A synthase 1, platelet	NM_011539|Tbxas1|21391|thromboxane A synthase 1, platelet	AK048544|Tbxas1|21391|thromboxane A synthase 1, platelet	AK139479|Tbxas1|21391|thromboxane A synthase 1, platelet	L18868|Tbxas1|21391|thromboxane A synthase 1, platelet
mm9_v1_chr3_-_20142068_20142081	0.298971	NKX2-3_NKX2-5.p2	BC108409|Cpa3|12873|carboxypeptidase A3, mast cell	J05118|Cpa3|12873|carboxypeptidase A3, mast cell	AK088906|Cpa3|12873|carboxypeptidase A3, mast cell	NM_007753|Cpa3|12873|carboxypeptidase A3, mast cell
mm9_v1_chr11_-_120489993_120490076	0.298525	NKX2-3_NKX2-5.p2	AK038934|Mafg|17134|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	AK083165|Mafg|17134|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
mm9_v1_chr12_-_105066203_105066249	0.297886	NKX2-3_NKX2-5.p2	BC037008|Serpina1b|20701|serine (or cysteine) preptidase inhibitor, clade A, member 1B
mm9_v1_chr9_-_117161234_117161295	0.297487	NKX2-3_NKX2-5.p2	AK030609|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK033005|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK030478|Rbms3|207181|RNA binding motif, single stranded interacting protein
mm9_v1_chr2_+_122573252_122573297	0.297262	NKX2-3_NKX2-5.p2	AK206166|Pldn|18457|pallidin
mm9_v1_chr7_+_109250256_109250275	0.295803	NKX2-3_NKX2-5.p2	AK003107|Art1|11870|ADP-ribosyltransferase 1	AK009284|Art1|11870|ADP-ribosyltransferase 1	AK009902|Art1|11870|ADP-ribosyltransferase 1	NM_009710|Art1|11870|ADP-ribosyltransferase 1	BC132492|Art1|11870|ADP-ribosyltransferase 1	BC132496|Art1|11870|ADP-ribosyltransferase 1	BC063760|Art1|11870|ADP-ribosyltransferase 1
mm9_v1_chr4_+_55093796_55093934	0.295611	NKX2-3_NKX2-5.p2	AK035041|Zfp462|242466|zinc finger protein 462
mm9_v1_chr16_+_32271553_32271694	0.29406	NKX2-3_NKX2-5.p2	AK009281|2310010M20Rik|69576|RIKEN cDNA 2310010M20 gene	NM_183283|2310010M20Rik|69576|RIKEN cDNA 2310010M20 gene
mm9_v1_chr18_-_84255781_84255953	0.293678	NKX2-3_NKX2-5.p2	BC040215|Tshz1|110796|teashirt zinc finger family member 1	AK220545|Tshz1|110796|teashirt zinc finger family member 1	AK152140|Tshz1|110796|teashirt zinc finger family member 1	NM_001081300|Tshz1|110796|teashirt zinc finger family member 1
mm9_v1_chr3_-_88214230_88214284	0.293142	NKX2-3_NKX2-5.p2	BC037139|Pmf1|67037|polyamine-modulated factor 1	BC049223|Pmf1|67037|polyamine-modulated factor 1	AK011174|Pmf1|67037|polyamine-modulated factor 1	AK012113|Pmf1|67037|polyamine-modulated factor 1	AK168200|Pmf1|67037|polyamine-modulated factor 1	NM_025928|Pmf1|67037|polyamine-modulated factor 1	AK013787|Pmf1|67037|polyamine-modulated factor 1	AF348509|Pmf1|67037|polyamine-modulated factor 1	AF348510|Pmf1|67037|polyamine-modulated factor 1	AK150603|Pmf1|67037|polyamine-modulated factor 1	AK078308|Pmf1|67037|polyamine-modulated factor 1
mm9_v1_chr4_+_59048027_59048124	0.292163	NKX2-3_NKX2-5.p2	NM_025277|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10	AK014158|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10	BC023670|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10	AK003187|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10	BC055434|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10	BC061090|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10
mm9_v1_chr3_+_135128934_135128963	0.292126	NKX2-3_NKX2-5.p2	AK206793|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
mm9_v1_chr6_-_118361541_118361556	0.291011	NKX2-3_NKX2-5.p2	BC030906|Bms1|213895|BMS1 homolog, ribosome assembly protein (yeast)
mm9_v1_chr11_+_99740500_99740500	0.290685	NKX2-3_NKX2-5.p2	AK003994|Gm11567|670533|predicted gene 11567	NM_001101613|Gm11567|670533|predicted gene 11567
mm9_v1_chr11_-_40562329_40562432	0.286426	NKX2-3_NKX2-5.p2	
mm9_v1_chr11_-_79056525_79056525	0.281213	NKX2-3_NKX2-5.p2	AK048511|Wsb1|78889|WD repeat and SOCS box-containing 1	NM_001042565|Wsb1|78889|WD repeat and SOCS box-containing 1
mm9_v1_chr17_-_34134309_34134502	0.277787	NKX2-3_NKX2-5.p2	K01762|H2-K1|14972|histocompatibility 2, K1, K region	X00172|H2-K1|14972|histocompatibility 2, K1, K region	J00395|H2-K1|14972|histocompatibility 2, K1, K region
mm9_v1_chr2_-_109118405_109118446	0.27712	NKX2-3_NKX2-5.p2	BC115926|Mett5d1|76894|methyltransferase 5 domain containing 1	BC117549|Mett5d1|76894|methyltransferase 5 domain containing 1	BC106186|Mett5d1|76894|methyltransferase 5 domain containing 1	BC089533|Mett5d1|76894|methyltransferase 5 domain containing 1	AK002682|Mett5d1|76894|methyltransferase 5 domain containing 1	NM_029790|Mett5d1|76894|methyltransferase 5 domain containing 1
mm9_v1_chr8_+_129587894_129588193	0.275627	NKX2-3_NKX2-5.p2	BC090616|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_001122850|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_033620|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK052416|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053762|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053563|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK137690|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053576|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AY026057|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	BC141187|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	BC145508|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)
mm9_v1_chr8_+_131256428_131256477	0.275553	NKX2-3_NKX2-5.p2	AK008343|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chr18_-_20273110_20273273	0.275362	NKX2-3_NKX2-5.p2	BC109161|Dsc1|13505|desmocollin 1	BC109162|Dsc1|13505|desmocollin 1	AK036893|Dsc1|13505|desmocollin 1	AK081826|Dsc1|13505|desmocollin 1	X97986|Dsc1|13505|desmocollin 1	AK079441|Dsc1|13505|desmocollin 1	NM_013504|Dsc1|13505|desmocollin 1
mm9_v1_chr9_+_120019498_120019516	0.275113	NKX2-3_NKX2-5.p2	AK078385|Slc25a38|208638|solute carrier family 25, member 38	BC010801|Slc25a38|208638|solute carrier family 25, member 38	NM_144793|Slc25a38|208638|solute carrier family 25, member 38
mm9_v1_chr8_-_47292973_47292977	0.273636	NKX2-3_NKX2-5.p2	AK186988|Slc25a4|11739|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4
mm9_v1_chr18_+_25224729_25224737	0.268919	NKX2-3_NKX2-5.p2	BC060607|Fhod3|225288|formin homology 2 domain containing 3
mm9_v1_chr10_-_114622068_114622080	0.266028	NKX2-3_NKX2-5.p2	BC120514|Tph2|216343|tryptophan hydroxylase 2	BC125430|Tph2|216343|tryptophan hydroxylase 2	AY090565|Tph2|216343|tryptophan hydroxylase 2	NM_173391|Tph2|216343|tryptophan hydroxylase 2
mm9_v1_chr9_-_26815760_26815835	0.265823	NKX2-3_NKX2-5.p2	AK210283|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)
mm9_v1_chrX_-_131343759_131343759	0.26572	NKX2-3_NKX2-5.p2	AK172960|Armcx2|67416|armadillo repeat containing, X-linked 2	NM_001166397|Armcx2|67416|armadillo repeat containing, X-linked 2	NM_001166398|Armcx2|67416|armadillo repeat containing, X-linked 2	NM_026139|Armcx2|67416|armadillo repeat containing, X-linked 2
mm9_v1_chr5_-_24501570_24501713	0.264854	NKX2-3_NKX2-5.p2	AK032238|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm9_v1_chr15_+_55139304_55139473	0.26201	NKX2-3_NKX2-5.p2	AK017553|Col14a1|12818|collagen, type XIV, alpha 1	NM_181277|Col14a1|12818|collagen, type XIV, alpha 1	AY221110|Col14a1|12818|collagen, type XIV, alpha 1	BC138345|Col14a1|12818|collagen, type XIV, alpha 1	BC145244|Col14a1|12818|collagen, type XIV, alpha 1
mm9_v1_chr1_-_173957407_173957430	0.261366	NKX2-3_NKX2-5.p2	AK049613|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AK046036|Vangl2|93840|vang-like 2 (van gogh, Drosophila)
mm9_v1_chr5_-_143665305_143665346	0.260987	NKX2-3_NKX2-5.p2	AK151514|Actb|11461|actin, beta
mm9_v1_chr5_-_143666064_143666381	0.260544	NKX2-3_NKX2-5.p2	AK218630|Actb|11461|actin, beta	BC040513|Actb|11461|actin, beta	AB028847|Actb|11461|actin, beta	AK212447|Actb|11461|actin, beta	AY618569|Actb|11461|actin, beta	U89400|Actb|11461|actin, beta	AK187650|Actb|11461|actin, beta	AK201181|Actb|11461|actin, beta	AK204356|Actb|11461|actin, beta	AK208556|Actb|11461|actin, beta
mm9_v1_chr7_+_21657274_21657274	0.259268	NKX2-3_NKX2-5.p2	NM_001166744|Vmn1r116|667268|vomeronasal 1 receptor 116
mm9_v1_chr16_-_88962877_88963117	0.259222	NKX2-3_NKX2-5.p2	AF345296|Krtap16-6|170655|keratin associated protein 16-6	BC107303|Krtap16-10|71369|keratin associated protein 16-10	BC107304|Krtap16-10|71369|keratin associated protein 16-10	BC119504|Krtap16-10|71369|keratin associated protein 16-10	BC127231|Krtap16-10|71369|keratin associated protein 16-10	BC127232|Krtap16-10|71369|keratin associated protein 16-10	BC132658|Krtap16-10|71369|keratin associated protein 16-10	BC132660|Krtap16-10|71369|keratin associated protein 16-10	AK017265|Krtap16-10|71369|keratin associated protein 16-10	NM_183296|Krtap16-10|71369|keratin associated protein 16-10
mm9_v1_chr16_-_63863905_63864000	0.256688	NKX2-3_NKX2-5.p2	BC138641|Epha3|13837|Eph receptor A3	BC138643|Epha3|13837|Eph receptor A3	BC145349|Epha3|13837|Eph receptor A3	AK132335|Epha3|13837|Eph receptor A3	BC060164|Epha3|13837|Eph receptor A3	M68513|Epha3|13837|Eph receptor A3	M68515|Epha3|13837|Eph receptor A3	AK084921|Epha3|13837|Eph receptor A3	AK041935|Epha3|13837|Eph receptor A3	AK045219|Epha3|13837|Eph receptor A3	NM_010140|Epha3|13837|Eph receptor A3	BC093483|Epha3|13837|Eph receptor A3	AK089119|Epha3|13837|Eph receptor A3
mm9_v1_chr16_+_90738690_90738714	0.256673	NKX2-3_NKX2-5.p2	AK158113|Mrap|77037|melanocortin 2 receptor accessory protein	BC027543|Mrap|77037|melanocortin 2 receptor accessory protein
mm9_v1_chr1_+_90031368_90031409	0.256312	NKX2-3_NKX2-5.p2	NM_145079|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A	U16818|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A	AK162514|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A	BC069940|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A	BC012716|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A
mm9_v1_chr15_-_74672048_74672072	0.255406	NKX2-3_NKX2-5.p2	AK142439|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	AK163083|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	AK168839|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	BC139248|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	BC139250|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	NM_001033229|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1
mm9_v1_chr10_-_116782524_116782604	0.253996	NKX2-3_NKX2-5.p2	AK086495|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chr2_-_44968508_44968606	0.253336	NKX2-3_NKX2-5.p2	AK158309|Zeb2|24136|zinc finger E-box binding homeobox 2	AK157561|Zeb2|24136|zinc finger E-box binding homeobox 2	BC060699|Zeb2|24136|zinc finger E-box binding homeobox 2	AK135557|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr13_+_4573320_4573394	0.251323	NKX2-3_NKX2-5.p2	AK020439|Akr1c21|77337|aldo-keto reductase family 1, member C21	NM_029901|Akr1c21|77337|aldo-keto reductase family 1, member C21	BC061057|Akr1c21|77337|aldo-keto reductase family 1, member C21	BC013531|Akr1c21|77337|aldo-keto reductase family 1, member C21	BC091761|Akr1c21|77337|aldo-keto reductase family 1, member C21	AB178898|Akr1c21|77337|aldo-keto reductase family 1, member C21	AY742217|Akr1c21|77337|aldo-keto reductase family 1, member C21
mm9_v1_chr5_-_91069499_91069680	0.249299	NKX2-3_NKX2-5.p2	AK005472|Rassf6|73246|Ras association (RalGDS/AF-6) domain family member 6	AK132288|Rassf6|73246|Ras association (RalGDS/AF-6) domain family member 6	NM_028478|Rassf6|73246|Ras association (RalGDS/AF-6) domain family member 6	BC031808|Rassf6|73246|Ras association (RalGDS/AF-6) domain family member 6
mm9_v1_chr2_-_122420914_122421005	0.248554	NKX2-3_NKX2-5.p2	AK167378|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)
mm9_v1_chr8_-_87956606_87956658	0.248055	NKX2-3_NKX2-5.p2	AK007050|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK013123|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	BC040087|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene
mm9_v1_chr3_-_135271190_135271201	0.247472	NKX2-3_NKX2-5.p2	AK089660|Nfkb1|18033|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105
mm9_v1_chr8_-_47292863_47292905	0.247276	NKX2-3_NKX2-5.p2	
mm9_v1_chr3_+_90097269_90097314	0.247227	NKX2-3_NKX2-5.p2	AK041594|Gatad2b|229542|GATA zinc finger domain containing 2B
mm9_v1_chr14_+_65885454_65885579	0.241743	NKX2-3_NKX2-5.p2	AK164657|Fbxo16|50759|F-box protein 16	AK081947|Fbxo16|50759|F-box protein 16	AF176531|Fbxo16|50759|F-box protein 16	NM_015795|Fbxo16|50759|F-box protein 16	AK043554|Fbxo16|50759|F-box protein 16	BC086690|Fbxo16|50759|F-box protein 16	BC115890|Fbxo16|50759|F-box protein 16
mm9_v1_chr8_+_119984482_119984512	0.240516	NKX2-3_NKX2-5.p2	AK020023|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr7_+_21119185_21119185	0.238564	NKX2-3_NKX2-5.p2	NM_001166738|Vmn1r104|667135|vomeronasal 1 receptor 104	NM_001166752|Vmn1r152|667504|vomeronasal 1 receptor 152
mm9_v1_chrX_+_34666757_34666828	0.235298	NKX2-3_NKX2-5.p2	NM_025937|Nkap|67050|NFKB activating protein	BC026774|Nkap|67050|NFKB activating protein	AK011492|Nkap|67050|NFKB activating protein	AY388959|Nkap|67050|NFKB activating protein	AK038344|Nkap|67050|NFKB activating protein	AK076125|Nkap|67050|NFKB activating protein	AK012826|Nkap|67050|NFKB activating protein	AK089943|Nkap|67050|NFKB activating protein
mm9_v1_chr9_-_78226334_78226394	0.235001	NKX2-3_NKX2-5.p2	AB283026|Ooep|67968|oocyte expressed protein homolog (dog)	BC062245|Ooep|67968|oocyte expressed protein homolog (dog)	AK133554|Ooep|67968|oocyte expressed protein homolog (dog)	AK135950|Ooep|67968|oocyte expressed protein homolog (dog)	AK136199|Ooep|67968|oocyte expressed protein homolog (dog)	AK145510|Ooep|67968|oocyte expressed protein homolog (dog)	AK010266|Ooep|67968|oocyte expressed protein homolog (dog)	AK010809|Ooep|67968|oocyte expressed protein homolog (dog)	DQ238107|Ooep|67968|oocyte expressed protein homolog (dog)	NM_026480|Ooep|67968|oocyte expressed protein homolog (dog)
mm9_v1_chr3_+_51219882_51219968	0.233627	NKX2-3_NKX2-5.p2	NM_053089|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm9_v1_chr12_-_105011807_105011857	0.233622	NKX2-3_NKX2-5.p2	NM_009246|Serpina1d|20703|serine (or cysteine) peptidase inhibitor, clade A, member 1D
mm9_v1_chr9_-_62644026_62644272	0.233109	NKX2-3_NKX2-5.p2	AK078303|Fem1b|14155|feminization 1 homolog b (C. elegans)	AK160393|Fem1b|14155|feminization 1 homolog b (C. elegans)
mm9_v1_chr4_-_133158082_133158082	0.232614	NKX2-3_NKX2-5.p2	NM_018754|Sfn|55948|stratifin
mm9_v1_chr6_-_13821449_13821517	0.229176	NKX2-3_NKX2-5.p2	BC070405|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK002763|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK011259|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK035027|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK136158|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK028169|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK152937|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene
mm9_v1_chr4_-_33010429_33010479	0.226152	NKX2-3_NKX2-5.p2	BC065177|Ankrd6|140577|ankyrin repeat domain 6	NM_001012450|Ankrd6|140577|ankyrin repeat domain 6	NM_080471|Ankrd6|140577|ankyrin repeat domain 6
mm9_v1_chr15_+_44455984_44456003	0.225977	NKX2-3_NKX2-5.p2	AK004366|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	AF076524|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9
mm9_v1_chr6_-_122560022_122560104	0.225567	NKX2-3_NKX2-5.p2	S52658|Gdf3|14562|growth differentiation factor 3	AK160533|Gdf3|14562|growth differentiation factor 3	AK152457|Gdf3|14562|growth differentiation factor 3	NM_008108|Gdf3|14562|growth differentiation factor 3	L06443|Gdf3|14562|growth differentiation factor 3
mm9_v1_chr2_+_38441497_38441644	0.22321	NKX2-3_NKX2-5.p2	AK214670|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK208733|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6
mm9_v1_chr8_-_48437701_48437701	0.222775	NKX2-3_NKX2-5.p2	BC100572|Stox2|71069|storkhead box 2	BC100573|Stox2|71069|storkhead box 2	NM_175162|Stox2|71069|storkhead box 2
mm9_v1_chr2_-_26927606_26927684	0.222455	NKX2-3_NKX2-5.p2	BC062145|Tmem8c|66139|transmembrane protein 8C	AK004477|Tmem8c|66139|transmembrane protein 8C	AK003298|Tmem8c|66139|transmembrane protein 8C	NM_025376|Tmem8c|66139|transmembrane protein 8C
mm9_v1_chr11_+_87895626_87895848	0.222329	NKX2-3_NKX2-5.p2	AK079148|Vezf1|22344|vascular endothelial zinc finger 1	AK018086|Vezf1|22344|vascular endothelial zinc finger 1
mm9_v1_chr6_+_57652594_57652646	0.221165	NKX2-3_NKX2-5.p2	BC016072|Lancl2|71835|LanC (bacterial lantibiotic synthetase component C)-like 2	AB035967|Lancl2|71835|LanC (bacterial lantibiotic synthetase component C)-like 2
mm9_v1_chr7_-_22104879_22104879	0.220954	NKX2-3_NKX2-5.p2	NM_001166726|Vmn1r127|621561|vomeronasal 1 receptor 127
mm9_v1_chr2_-_60590923_60591029	0.220218	NKX2-3_NKX2-5.p2	AK201259|Rbms1|56878|RNA binding motif, single stranded interacting protein 1
mm9_v1_chr4_-_104548965_104549005	0.220179	NKX2-3_NKX2-5.p2	AB077296|C8a|230558|complement component 8, alpha polypeptide	AB077297|C8a|230558|complement component 8, alpha polypeptide	AB077298|C8a|230558|complement component 8, alpha polypeptide	BC027748|C8a|230558|complement component 8, alpha polypeptide	AK090245|C8a|230558|complement component 8, alpha polypeptide	AB077295|C8a|230558|complement component 8, alpha polypeptide	NM_146148|C8a|230558|complement component 8, alpha polypeptide
mm9_v1_chr9_-_70782366_70782427	0.219473	NKX2-3_NKX2-5.p2	AY228765|Lipc|15450|lipase, hepatic	X58426|Lipc|15450|lipase, hepatic	BC094050|Lipc|15450|lipase, hepatic
mm9_v1_chr7_-_21161589_21161589	0.218533	NKX2-3_NKX2-5.p2	NM_001167162|Gm4201|100043061|predicted gene 4201	NM_001167163|Gm4141|100042976|predicted gene 4141
mm9_v1_chr13_+_23898861_23898926	0.21844	NKX2-3_NKX2-5.p2	AK050277|Slc17a2|218103|solute carrier family 17 (sodium phosphate), member 2	AK040717|Slc17a2|218103|solute carrier family 17 (sodium phosphate), member 2	NM_144836|Slc17a2|218103|solute carrier family 17 (sodium phosphate), member 2	AK050184|Slc17a2|218103|solute carrier family 17 (sodium phosphate), member 2
mm9_v1_chr6_+_141578016_141578059	0.218313	NKX2-3_NKX2-5.p2	AB031959|Slco1b2|28253|solute carrier organic anion transporter family, member 1b2	NM_020495|Slco1b2|28253|solute carrier organic anion transporter family, member 1b2
mm9_v1_chr17_-_33783578_33783579	0.218247	NKX2-3_NKX2-5.p2	AK150477|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M
mm9_v1_chr9_+_32180002_32180181	0.216737	NKX2-3_NKX2-5.p2	NM_019659|Kcnj1|56379|potassium inwardly-rectifying channel, subfamily J, member 1	AK085262|Kcnj1|56379|potassium inwardly-rectifying channel, subfamily J, member 1	AF012834|Kcnj1|56379|potassium inwardly-rectifying channel, subfamily J, member 1
mm9_v1_chr3_-_86978431_86978668	0.216349	NKX2-3_NKX2-5.p2	BC023765|Kirrel|170643|kin of IRRE like (Drosophila)	AK158381|Kirrel|170643|kin of IRRE like (Drosophila)	NM_001170985|Kirrel|170643|kin of IRRE like (Drosophila)	NM_130867|Kirrel|170643|kin of IRRE like (Drosophila)
mm9_v1_chr1_-_63260782_63260782	0.214968	NKX2-3_NKX2-5.p2	BC032934|Gpr1|241070|G protein-coupled receptor 1	NM_146250|Gpr1|241070|G protein-coupled receptor 1
mm9_v1_chr16_+_91677879_91677930	0.214745	NKX2-3_NKX2-5.p2	BC029990|Son|20658|Son DNA binding protein
mm9_v1_chr16_-_57754816_57754849	0.213873	NKX2-3_NKX2-5.p2	BC011061|Col8a1|12837|collagen, type VIII, alpha 1	BC058281|Col8a1|12837|collagen, type VIII, alpha 1	AK159542|Col8a1|12837|collagen, type VIII, alpha 1	AK029203|Col8a1|12837|collagen, type VIII, alpha 1	AK018742|Col8a1|12837|collagen, type VIII, alpha 1	AK032048|Col8a1|12837|collagen, type VIII, alpha 1	AK046370|Col8a1|12837|collagen, type VIII, alpha 1	NM_007739|Col8a1|12837|collagen, type VIII, alpha 1
mm9_v1_chr2_-_163450863_163450871	0.213405	NKX2-3_NKX2-5.p2	AK003471|Serinc3|26943|serine incorporator 3
mm9_v1_chr9_-_117160916_117161040	0.213289	NKX2-3_NKX2-5.p2	BC117840|Rbms3|207181|RNA binding motif, single stranded interacting protein	BC117841|Rbms3|207181|RNA binding motif, single stranded interacting protein
mm9_v1_chr2_+_90858663_90858815	0.212559	NKX2-3_NKX2-5.p2	AK080832|Celf1|13046|CUGBP, Elav-like family member 1	AK160135|Celf1|13046|CUGBP, Elav-like family member 1
mm9_v1_chr7_+_20686506_20686506	0.212505	NKX2-3_NKX2-5.p2	NM_001166736|Vmn1r91|667067|vomeronasal 1 receptor 91
mm9_v1_chr9_-_24913234_24913238	0.212186	NKX2-3_NKX2-5.p2	AK208093|Herpud2|80517|HERPUD family member 2
mm9_v1_chr15_+_102839909_102840036	0.212083	NKX2-3_NKX2-5.p2	X16511|Hoxc6|15425|homeobox C6	BC028482|Hoxc6|15425|homeobox C6	NM_010465|Hoxc6|15425|homeobox C6	BC141061|Hoxc6|15425|homeobox C6	AB221685|Hoxc6|15425|homeobox C6
mm9_v1_chr17_+_85373391_85373391	0.21179	NKX2-3_NKX2-5.p2	NM_001159498|Ppm1b|19043|protein phosphatase 1B, magnesium dependent, beta isoform	U09218|Ppm1b|19043|protein phosphatase 1B, magnesium dependent, beta isoform
mm9_v1_chr7_-_21838802_21838802	0.211061	NKX2-3_NKX2-5.p2	NM_001166715|Vmn1r120|435953|vomeronasal 1 receptor 120
mm9_v1_chr16_+_88729106_88729106	0.210505	NKX2-3_NKX2-5.p2	BC027551|Krtap13-1|268905|keratin associated protein 13-1	NM_183189|Krtap13-1|268905|keratin associated protein 13-1
mm9_v1_chr1_-_14299936_14300280	0.209291	NKX2-3_NKX2-5.p2	BC066860|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK045320|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK042412|Eya1|14048|eyes absent 1 homolog (Drosophila)	BC060260|Eya1|14048|eyes absent 1 homolog (Drosophila)	NM_010164|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK153788|Eya1|14048|eyes absent 1 homolog (Drosophila)
mm9_v1_chr7_-_23628623_23628623	0.208549	NKX2-3_NKX2-5.p2	NM_001166758|Vmn1r159|670857|vomeronasal 1 receptor 159
mm9_v1_chr11_+_101443529_101443628	0.207834	NKX2-3_NKX2-5.p2	AK146019|Tmem106a|217203|transmembrane protein 106A	NM_144830|Tmem106a|217203|transmembrane protein 106A	AK154217|Tmem106a|217203|transmembrane protein 106A	AK150285|Tmem106a|217203|transmembrane protein 106A	AK152741|Tmem106a|217203|transmembrane protein 106A	AK151842|Tmem106a|217203|transmembrane protein 106A	BC033268|Tmem106a|217203|transmembrane protein 106A	AK170900|Tmem106a|217203|transmembrane protein 106A	AK172282|Tmem106a|217203|transmembrane protein 106A	AK149650|Tmem106a|217203|transmembrane protein 106A	AK168437|Tmem106a|217203|transmembrane protein 106A	AK169081|Tmem106a|217203|transmembrane protein 106A
mm9_v1_chr9_+_3335139_3335230	0.206471	NKX2-3_NKX2-5.p2	AK160783|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	BC050863|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	NM_026303|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)
mm9_v1_chr1_-_20608010_20608144	0.205299	NKX2-3_NKX2-5.p2	AY438374|Pkhd1|241035|polycystic kidney and hepatic disease 1	AK143992|Pkhd1|241035|polycystic kidney and hepatic disease 1	AY130764|Pkhd1|241035|polycystic kidney and hepatic disease 1	NM_153179|Pkhd1|241035|polycystic kidney and hepatic disease 1	AK052698|Pkhd1|241035|polycystic kidney and hepatic disease 1
mm9_v1_chr17_-_74723283_74723283	0.2048	NKX2-3_NKX2-5.p2	AY297538|Dpy30|66310|dpy-30 homolog (C. elegans)	NM_024428|Dpy30|66310|dpy-30 homolog (C. elegans)
mm9_v1_chr6_+_83087016_83087103	0.204626	NKX2-3_NKX2-5.p2	NM_009106|Rtkn|20166|rhotekin	NM_133641|Rtkn|20166|rhotekin	U54638|Rtkn|20166|rhotekin	BC013820|Rtkn|20166|rhotekin
mm9_v1_chr18_-_35097374_35097402	0.203179	NKX2-3_NKX2-5.p2	AK028123|Hspa9|15526|heat shock protein 9
mm9_v1_chr11_-_86400309_86400486	0.203091	NKX2-3_NKX2-5.p2	AK154616|Tmem49|75909|transmembrane protein 49
mm9_v1_chrX_+_162608411_162608448	0.202528	NKX2-3_NKX2-5.p2	AK045118|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK160583|Gemin8|237221|gem (nuclear organelle) associated protein 8	NM_146238|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK085045|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK037580|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK047511|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK053774|Gemin8|237221|gem (nuclear organelle) associated protein 8
mm9_v1_chr13_-_41923709_41923740	0.20089	NKX2-3_NKX2-5.p2	BC027755|9530008L14Rik|109254|RIKEN cDNA 9530008L14 gene
mm9_v1_chr2_+_32087125_32087136	0.198624	NKX2-3_NKX2-5.p2	AK161103|Prrc2b|227723|proline-rich coiled-coil 2B
mm9_v1_chr3_+_109376824_109376976	0.197411	NKX2-3_NKX2-5.p2	AF140280|Vav3|57257|vav 3 oncogene	NM_146139|Vav3|57257|vav 3 oncogene	AK147053|Vav3|57257|vav 3 oncogene	BC027242|Vav3|57257|vav 3 oncogene
mm9_v1_chr7_+_134913327_134913502	0.196231	NKX2-3_NKX2-5.p2	AK136955|Orai3|269999|ORAI calcium release-activated calcium modulator 3	NM_198424|Orai3|269999|ORAI calcium release-activated calcium modulator 3	AK037138|Orai3|269999|ORAI calcium release-activated calcium modulator 3	BC061259|Orai3|269999|ORAI calcium release-activated calcium modulator 3	AB271216|Orai3|269999|ORAI calcium release-activated calcium modulator 3	AM712358|Orai3|269999|ORAI calcium release-activated calcium modulator 3
mm9_v1_chr1_-_63223287_63223307	0.194407	NKX2-3_NKX2-5.p2	AK034597|Ndufs1|227197|NADH dehydrogenase (ubiquinone) Fe-S protein 1
mm9_v1_chr7_+_22296798_22296798	0.194209	NKX2-3_NKX2-5.p2	NM_001166753|Vmn1r155|667530|vomeronasal 1 receptor 155	NM_001166759|Vmn1r107|673977|vomeronasal 1 receptor 107	NM_001166846|Vmn1r110|100043561|vomeronasal 1 receptor 110	NM_001166848|Vmn1r130|100043596|vomeronasal 1 receptor 130	NM_001166849|Vmn1r137|100043614|vomeronasal 1 receptor 137	NM_001166850|Vmn1r165|100043667|vomeronasal 1 receptor 165
mm9_v1_chr14_+_63761507_63761880	0.19372	NKX2-3_NKX2-5.p2	AK201025|Ctsb|13030|cathepsin B	AK201162|Ctsb|13030|cathepsin B	AF062526|Ctsb|13030|cathepsin B
mm9_v1_chr16_-_16359122_16359124	0.192814	NKX2-3_NKX2-5.p2	NM_001025947|Dnm1l|74006|dynamin 1-like	NM_152816|Dnm1l|74006|dynamin 1-like
mm9_v1_chr7_-_106630812_106630831	0.19194	NKX2-3_NKX2-5.p2	U89414|Rps3|27050|ribosomal protein S3
mm9_v1_chr19_-_36763823_36763968	0.191634	NKX2-3_NKX2-5.p2	AK142254|1500017E21Rik|668215|RIKEN cDNA 1500017E21 gene
mm9_v1_chr18_-_62915799_62916000	0.190182	NKX2-3_NKX2-5.p2	BC072581|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene	AK012381|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene	AK020725|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene
mm9_v1_chr11_-_99464621_99464621	0.189567	NKX2-3_NKX2-5.p2	NM_001127354|Gm11938|100041412|predicted gene 11938
mm9_v1_chrX_-_140367467_140367853	0.18951	NKX2-3_NKX2-5.p2	AY560329|Dcx|13193|doublecortin	AK048410|Dcx|13193|doublecortin	AF045547|Dcx|13193|doublecortin	AK164119|Dcx|13193|doublecortin	BC056391|Dcx|13193|doublecortin	AK049050|Dcx|13193|doublecortin	NM_001110222|Dcx|13193|doublecortin	BC057010|Dcx|13193|doublecortin	BC062974|Dcx|13193|doublecortin	AK014264|Dcx|13193|doublecortin	NM_001110223|Dcx|13193|doublecortin	NM_001110224|Dcx|13193|doublecortin	NM_010025|Dcx|13193|doublecortin	AB011678|Dcx|13193|doublecortin
mm9_v1_chr12_-_52849709_52849723	0.188125	NKX2-3_NKX2-5.p2	AK077185|Hectd1|207304|HECT domain containing 1
mm9_v1_chr10_-_106922986_106923189	0.187914	NKX2-3_NKX2-5.p2	X56182|Myf5|17877|myogenic factor 5	BC132144|Myf5|17877|myogenic factor 5	AK044894|Myf5|17877|myogenic factor 5	AK083402|Myf5|17877|myogenic factor 5	NM_008656|Myf5|17877|myogenic factor 5
mm9_v1_chr16_+_90738550_90738642	0.186026	NKX2-3_NKX2-5.p2	AK003912|Mrap|77037|melanocortin 2 receptor accessory protein	NM_029844|Mrap|77037|melanocortin 2 receptor accessory protein
mm9_v1_chr6_-_71773747_71773805	0.185254	NKX2-3_NKX2-5.p2	AK039187|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010369|Mrpl35|66223|mitochondrial ribosomal protein L35	AK012807|Mrpl35|66223|mitochondrial ribosomal protein L35	AK004385|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010223|Mrpl35|66223|mitochondrial ribosomal protein L35	BC028750|Mrpl35|66223|mitochondrial ribosomal protein L35	NM_025430|Mrpl35|66223|mitochondrial ribosomal protein L35
mm9_v1_chr1_-_55283189_55283376	0.184246	NKX2-3_NKX2-5.p2	BC026871|Rftn2|74013|raftlin family member 2	AK014318|Rftn2|74013|raftlin family member 2
mm9_v1_chr3_-_49561168_49561243	0.1842	NKX2-3_NKX2-5.p2	AF416735|Pcdh18|73173|protocadherin 18	AK173204|Pcdh18|73173|protocadherin 18	BC052198|Pcdh18|73173|protocadherin 18	AK036560|Pcdh18|73173|protocadherin 18	AK032820|Pcdh18|73173|protocadherin 18	NM_130448|Pcdh18|73173|protocadherin 18
mm9_v1_chr18_-_12978106_12978267	0.183458	NKX2-3_NKX2-5.p2	BC057194|Osbpl1a|64291|oxysterol binding protein-like 1A	AF394063|Osbpl1a|64291|oxysterol binding protein-like 1A	AK133806|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr3_+_151100845_151100914	0.183189	NKX2-3_NKX2-5.p2	NM_133222|Eltd1|170757|EGF, latrophilin seven transmembrane domain containing 1	AF385682|Eltd1|170757|EGF, latrophilin seven transmembrane domain containing 1	BC017134|Eltd1|170757|EGF, latrophilin seven transmembrane domain containing 1
mm9_v1_chr5_+_125365789_125365870	0.182222	NKX2-3_NKX2-5.p2	BC096550|Zfp664|269704|zinc finger protein 664
mm9_v1_chr19_+_27291507_27291624	0.18131	NKX2-3_NKX2-5.p2	AK044683|Vldlr|22359|very low density lipoprotein receptor	AK076172|Vldlr|22359|very low density lipoprotein receptor	NM_001161420|Vldlr|22359|very low density lipoprotein receptor	NM_013703|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr10_+_32803288_32803366	0.177981	NKX2-3_NKX2-5.p2	NM_029726|Trdn|76757|triadin	AK009816|Trdn|76757|triadin	AF223415|Trdn|76757|triadin	AF223416|Trdn|76757|triadin	BC034343|Trdn|76757|triadin	AF223417|Trdn|76757|triadin
mm9_v1_chr11_-_99418138_99418166	0.176881	NKX2-3_NKX2-5.p2	BC117058|Krtap3-2|66708|keratin associated protein 3-2	BC117092|Krtap3-2|66708|keratin associated protein 3-2	AK003615|Krtap3-2|66708|keratin associated protein 3-2	AK014641|Krtap3-2|66708|keratin associated protein 3-2	NM_025720|Krtap3-2|66708|keratin associated protein 3-2
mm9_v1_chr14_-_19164241_19164397	0.176719	NKX2-3_NKX2-5.p2	BC003781|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	AK148266|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	X92665|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	AK090177|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	NM_009455|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)
mm9_v1_chr14_-_52857246_52857246	0.176115	NKX2-3_NKX2-5.p2	AY863219|Chd8|67772|chromodomain helicase DNA binding protein 8	DQ190419|Chd8|67772|chromodomain helicase DNA binding protein 8	NM_201637|Chd8|67772|chromodomain helicase DNA binding protein 8
mm9_v1_chr1_+_63223728_63223739	0.175646	NKX2-3_NKX2-5.p2	AF029844|Eef1b2|55949|eukaryotic translation elongation factor 1 beta 2
mm9_v1_chr4_+_44045506_44045645	0.172053	NKX2-3_NKX2-5.p2	
mm9_v1_chr14_-_47006944_47006954	0.172016	NKX2-3_NKX2-5.p2	BC052846|Bmp4|12159|bone morphogenetic protein 4
mm9_v1_chr5_+_91223558_91223596	0.171782	NKX2-3_NKX2-5.p2	AK142955|Cxcl15|20309|chemokine (C-X-C motif) ligand 15	NM_011339|Cxcl15|20309|chemokine (C-X-C motif) ligand 15	BC061138|Cxcl15|20309|chemokine (C-X-C motif) ligand 15	AF082859|Cxcl15|20309|chemokine (C-X-C motif) ligand 15
mm9_v1_chr18_+_37164856_37165092	0.169608	NKX2-3_NKX2-5.p2	BC079625|Pcdha10|12943|protocadherin alpha 10	AY013757|Pcdha10|12943|protocadherin alpha 10	NM_009961|Pcdha10|12943|protocadherin alpha 10	AB008178|Pcdha10|12943|protocadherin alpha 10
mm9_v1_chr10_-_36858671_36858801	0.168561	NKX2-3_NKX2-5.p2	BC046601|Marcks|17118|myristoylated alanine rich protein kinase C substrate	M60474|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC002068|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC039911|Marcks|17118|myristoylated alanine rich protein kinase C substrate	NM_008538|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr3_-_135271220_135271233	0.166591	NKX2-3_NKX2-5.p2	L28117|Nfkb1|18033|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105
mm9_v1_chr5_-_37221812_37221913	0.166491	NKX2-3_NKX2-5.p2	BC066211|Man2b2|17160|mannosidase 2, alpha B2	AK004900|Man2b2|17160|mannosidase 2, alpha B2	AK040388|Man2b2|17160|mannosidase 2, alpha B2	AK151873|Man2b2|17160|mannosidase 2, alpha B2	AK152349|Man2b2|17160|mannosidase 2, alpha B2	AB006458|Man2b2|17160|mannosidase 2, alpha B2	AK079969|Man2b2|17160|mannosidase 2, alpha B2	AK165376|Man2b2|17160|mannosidase 2, alpha B2	NM_008550|Man2b2|17160|mannosidase 2, alpha B2
mm9_v1_chr11_-_115794319_115794319	0.166366	NKX2-3_NKX2-5.p2	AB059999|Recql5|170472|RecQ protein-like 5	NM_130454|Recql5|170472|RecQ protein-like 5
mm9_v1_chr9_+_98325217_98325252	0.164346	NKX2-3_NKX2-5.p2	AK011641|Rbp1|19659|retinol binding protein 1, cellular	BC091751|Rbp1|19659|retinol binding protein 1, cellular	BC018254|Rbp1|19659|retinol binding protein 1, cellular
mm9_v1_chr8_+_125365477_125365497	0.163161	NKX2-3_NKX2-5.p2	NM_001100618|Gm16378|100043225|predicted gene 16378
mm9_v1_chr11_+_46268432_46268486	0.163116	NKX2-3_NKX2-5.p2	AK148474|Havcr2|171285|hepatitis A virus cellular receptor 2	NM_134250|Havcr2|171285|hepatitis A virus cellular receptor 2	AF450241|Havcr2|171285|hepatitis A virus cellular receptor 2	AY553334|Havcr2|171285|hepatitis A virus cellular receptor 2	AK170775|Havcr2|171285|hepatitis A virus cellular receptor 2	BC106851|Havcr2|171285|hepatitis A virus cellular receptor 2	BC106852|Havcr2|171285|hepatitis A virus cellular receptor 2	AF399831|Havcr2|171285|hepatitis A virus cellular receptor 2
mm9_v1_chr6_+_116123984_116124113	0.15949	NKX2-3_NKX2-5.p2	AK210116|Gm8203|666634|predicted pseudogene 8203
mm9_v1_chr7_-_20753725_20753725	0.158355	NKX2-3_NKX2-5.p2	NM_001166723|Vmn1r94|620537|vomeronasal 1 receptor 94	NM_001166749|Vmn1r142|667464|vomeronasal 1 receptor 142
mm9_v1_chr3_+_89324085_89324085	0.157718	NKX2-3_NKX2-5.p2	AK137738|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	AK170218|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	NM_080466|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm9_v1_chr17_+_34729159_34729288	0.156937	NKX2-3_NKX2-5.p2	AK159623|Pbx2|18515|pre B-cell leukemia transcription factor 2	BC010287|Pbx2|18515|pre B-cell leukemia transcription factor 2	BC062147|Pbx2|18515|pre B-cell leukemia transcription factor 2
mm9_v1_chr4_-_127006368_127006404	0.1565	NKX2-3_NKX2-5.p2	NM_008126|Gjb3|14620|gap junction protein, beta 3	X63099|Gjb3|14620|gap junction protein, beta 3
mm9_v1_chr2_-_59963586_59963753	0.154804	NKX2-3_NKX2-5.p2	BC150814|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK029386|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK134250|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK173180|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK030867|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B
mm9_v1_chr3_-_27316628_27316630	0.153291	NKX2-3_NKX2-5.p2	AK039335|Fndc3b|72007|fibronectin type III domain containing 3B
mm9_v1_chr12_+_59312790_59312790	0.151989	NKX2-3_NKX2-5.p2	AK046464|Sstr1|20605|somatostatin receptor 1	NM_009216|Sstr1|20605|somatostatin receptor 1
mm9_v1_chr10_+_34203204_34203369	0.151719	NKX2-3_NKX2-5.p2	BC007137|Frk|14302|fyn-related kinase	AK166379|Frk|14302|fyn-related kinase	NM_001159544|Frk|14302|fyn-related kinase	NM_010237|Frk|14302|fyn-related kinase	AK028855|Frk|14302|fyn-related kinase	L36132|Frk|14302|fyn-related kinase	AK052614|Frk|14302|fyn-related kinase	AK077264|Frk|14302|fyn-related kinase	Z48757|Frk|14302|fyn-related kinase	AK085191|Frk|14302|fyn-related kinase
mm9_v1_chr7_-_140206929_140206929	0.147814	NKX2-3_NKX2-5.p2	NM_001170744|Ctbp2|13017|C-terminal binding protein 2
mm9_v1_chr14_+_120830603_120830641	0.146985	NKX2-3_NKX2-5.p2	AK003316|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr6_+_123728988_123728988	0.145804	NKX2-3_NKX2-5.p2	NM_001104639|Vmn2r24|243628|vomeronasal 2, receptor 24
mm9_v1_chr15_-_74686747_74686747	0.145733	NKX2-3_NKX2-5.p2	BC116908|Cyp11b2|13072|cytochrome P450, family 11, subfamily b, polypeptide 2	BC119321|Cyp11b2|13072|cytochrome P450, family 11, subfamily b, polypeptide 2	NM_009991|Cyp11b2|13072|cytochrome P450, family 11, subfamily b, polypeptide 2
mm9_v1_chr10_-_31134240_31134240	0.145485	NKX2-3_NKX2-5.p2	NM_011509|Gm3258|100041294|predicted gene 3258
mm9_v1_chr4_+_34841027_34841057	0.144689	NKX2-3_NKX2-5.p2	NM_009889|Cga|12640|glycoprotein hormones, alpha subunit	BC087926|Cga|12640|glycoprotein hormones, alpha subunit	J00643|Cga|12640|glycoprotein hormones, alpha subunit
mm9_v1_chr11_+_67779992_67780002	0.143688	NKX2-3_NKX2-5.p2	AK166117|Stx8|55943|syntaxin 8	AF036716|Stx8|55943|syntaxin 8
mm9_v1_chr13_-_8870975_8870975	0.143013	NKX2-3_NKX2-5.p2	NM_001039388|Wdr37|207615|WD repeat domain 37
mm9_v1_chrX_+_132804834_132804853	0.142026	NKX2-3_NKX2-5.p2	AK003294|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr11_+_67779978_67779989	0.141952	NKX2-3_NKX2-5.p2	AK035105|Stx8|55943|syntaxin 8	BC048167|Stx8|55943|syntaxin 8	NM_018768|Stx8|55943|syntaxin 8	BC038186|Stx8|55943|syntaxin 8	AF093064|Stx8|55943|syntaxin 8	AB040054|Stx8|55943|syntaxin 8
mm9_v1_chr9_+_64083007_64083016	0.140671	NKX2-3_NKX2-5.p2	AB035420|Uchl4|93841|ubiquitin carboxyl-terminal esterase L4	NM_033607|Uchl4|93841|ubiquitin carboxyl-terminal esterase L4	BC139440|Uchl4|93841|ubiquitin carboxyl-terminal esterase L4	BC139441|Uchl4|93841|ubiquitin carboxyl-terminal esterase L4
mm9_v1_chr15_-_94408654_94408675	0.140644	NKX2-3_NKX2-5.p2	
mm9_v1_chr15_-_13103346_13103429	0.140123	NKX2-3_NKX2-5.p2	NM_007666|Cdh6|12563|cadherin 6	AK134611|Cdh6|12563|cadherin 6
mm9_v1_chr2_+_80457201_80457422	0.139955	NKX2-3_NKX2-5.p2	AF237618|Dusp19|68082|dual specificity phosphatase 19	NM_024438|Dusp19|68082|dual specificity phosphatase 19	AK010127|Dusp19|68082|dual specificity phosphatase 19	AK077871|Dusp19|68082|dual specificity phosphatase 19	AK170170|Dusp19|68082|dual specificity phosphatase 19	AK018369|Dusp19|68082|dual specificity phosphatase 19	AB051896|Dusp19|68082|dual specificity phosphatase 19	AK049927|Dusp19|68082|dual specificity phosphatase 19	AB038769|Dusp19|68082|dual specificity phosphatase 19	BC021591|Dusp19|68082|dual specificity phosphatase 19	AK083610|Dusp19|68082|dual specificity phosphatase 19
mm9_v1_chr2_-_84265422_84265424	0.139541	NKX2-3_NKX2-5.p2	AK137210|Calcrl|54598|calcitonin receptor-like	NM_018782|Calcrl|54598|calcitonin receptor-like	AB015595|Calcrl|54598|calcitonin receptor-like
mm9_v1_chr7_-_21597204_21597204	0.13855	NKX2-3_NKX2-5.p2	NM_001166837|Vmn1r114|100042996|vomeronasal 1 receptor 114
mm9_v1_chr2_+_119373442_119373461	0.137675	NKX2-3_NKX2-5.p2	NM_019769|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene	AK156588|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene	AK045920|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene	AK168284|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene	AK075723|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene
mm9_v1_chr11_-_99471502_99471502	0.13748	NKX2-3_NKX2-5.p2	NM_001099346|Gm11937|100041488|predicted gene 11937
mm9_v1_chr3_+_134951618_134951625	0.137086	NKX2-3_NKX2-5.p2	AK007603|Bdh2|69772|3-hydroxybutyrate dehydrogenase, type 2
mm9_v1_chr9_+_74800828_74800859	0.135981	NKX2-3_NKX2-5.p2	BC060215|BC031353|235493|cDNA sequence BC031353	NM_001113283|BC031353|235493|cDNA sequence BC031353
mm9_v1_chr2_+_152987262_152987297	0.134745	NKX2-3_NKX2-5.p2	AK162435|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK048158|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK171487|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	BC110309|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK088012|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK047497|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK087048|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AB093220|Tm9sf4|99237|transmembrane 9 superfamily protein member 4
mm9_v1_chr3_+_121160714_121160815	0.134177	NKX2-3_NKX2-5.p2	AK181356|Cnn3|71994|calponin 3, acidic
mm9_v1_chr14_-_65515555_65515693	0.134081	NKX2-3_NKX2-5.p2	BC002212|Hmbox1|219150|homeobox containing 1
mm9_v1_chr2_-_155648591_155648734	0.133474	NKX2-3_NKX2-5.p2	AK198737|Eif6|16418|eukaryotic translation initiation factor 6
mm9_v1_chr11_-_76577079_76577091	0.131605	NKX2-3_NKX2-5.p2	AK147799|Gosr1|53334|golgi SNAP receptor complex member 1	AK154972|Gosr1|53334|golgi SNAP receptor complex member 1
mm9_v1_chr8_-_49760037_49760043	0.131136	NKX2-3_NKX2-5.p2	BC145284|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)	AB025412|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)	NM_001145937|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)	NM_011857|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)
mm9_v1_chr5_-_72559220_72559438	0.128713	NKX2-3_NKX2-5.p2	AK017777|Commd8|27784|COMM domain containing 8	AK013015|Commd8|27784|COMM domain containing 8	AK170011|Commd8|27784|COMM domain containing 8	AK013371|Commd8|27784|COMM domain containing 8	BC098183|Commd8|27784|COMM domain containing 8	AK158078|Commd8|27784|COMM domain containing 8	AK009275|Commd8|27784|COMM domain containing 8	AK151560|Commd8|27784|COMM domain containing 8	AK012653|Commd8|27784|COMM domain containing 8	AK077934|Commd8|27784|COMM domain containing 8	NM_178599|Commd8|27784|COMM domain containing 8
mm9_v1_chr1_-_173957316_173957398	0.125459	NKX2-3_NKX2-5.p2	AK033128|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AY035370|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AK129311|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	BC052195|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	NM_033509|Vangl2|93840|vang-like 2 (van gogh, Drosophila)
mm9_v1_chr3_-_51129908_51129958	0.123929	NKX2-3_NKX2-5.p2	AF256216|Elf2|69257|E74-like factor 2	AF256217|Elf2|69257|E74-like factor 2	NM_023502|Elf2|69257|E74-like factor 2	BC092057|Elf2|69257|E74-like factor 2
mm9_v1_chr10_+_86984670_86984685	0.123457	NKX2-3_NKX2-5.p2	AK149519|Pah|18478|phenylalanine hydroxylase	AK145839|Pah|18478|phenylalanine hydroxylase	BC013458|Pah|18478|phenylalanine hydroxylase
mm9_v1_chr8_-_26212203_26212230	0.122516	NKX2-3_NKX2-5.p2	BC010215|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	AF286161|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
mm9_v1_chr11_-_84326869_84327030	0.122131	NKX2-3_NKX2-5.p2	AY306199|Aatf|56321|apoptosis antagonizing transcription factor	BC025080|Aatf|56321|apoptosis antagonizing transcription factor	AK141334|Aatf|56321|apoptosis antagonizing transcription factor	AF222801|Aatf|56321|apoptosis antagonizing transcription factor	NM_019816|Aatf|56321|apoptosis antagonizing transcription factor	AK077789|Aatf|56321|apoptosis antagonizing transcription factor
mm9_v1_chr3_+_137004041_137004080	0.119594	NKX2-3_NKX2-5.p2	NM_001163522|Emcn|59308|endomucin	NM_016885|Emcn|59308|endomucin	AK145825|Emcn|59308|endomucin	AK002616|Emcn|59308|endomucin	AK029348|Emcn|59308|endomucin	BC003706|Emcn|59308|endomucin
mm9_v1_chr5_-_135096100_135096123	0.119165	NKX2-3_NKX2-5.p2	BC023227|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr11_-_46512331_46512331	0.118933	NKX2-3_NKX2-5.p2	NM_001161355|Timd2|171284|T-cell immunoglobulin and mucin domain containing 2
mm9_v1_chr13_-_36826104_36826206	0.118818	NKX2-3_NKX2-5.p2	AK003046|Nrn1|68404|neuritin 1
mm9_v1_chr2_-_126701791_126701996	0.118105	NKX2-3_NKX2-5.p2	BC145122|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	BC150709|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AF376052|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AK162483|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AK014698|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AF149013|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AY032951|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AK052823|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	NM_001164325|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	NM_021450|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7
mm9_v1_chr4_+_104830022_104830255	0.115715	NKX2-3_NKX2-5.p2	AK160056|Ppap2b|67916|phosphatidic acid phosphatase type 2B	AK076183|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr16_+_30065419_30065442	0.114314	NKX2-3_NKX2-5.p2	AK133538|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	AK132536|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	BC018375|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	BC051428|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	NM_008235|Hes1|15205|hairy and enhancer of split 1 (Drosophila)
mm9_v1_chr12_+_101348348_101348406	0.11418	NKX2-3_NKX2-5.p2	AK161641|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK161723|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK133926|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK088411|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK148906|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	BC003860|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK166783|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK169015|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1
mm9_v1_chr3_+_31801595_31801757	0.113319	NKX2-3_NKX2-5.p2	AK012400|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	BC046227|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	BC058957|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	NM_028231|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm9_v1_chr3_+_51299153_51299205	0.11247	NKX2-3_NKX2-5.p2	
mm9_v1_chr6_+_141612118_141612134	0.110396	NKX2-3_NKX2-5.p2	AF250912|Slco1b2|28253|solute carrier organic anion transporter family, member 1b2
mm9_v1_chr11_-_99146520_99146575	0.110186	NKX2-3_NKX2-5.p2	GU046702|Krt24|75706|keratin 24	BC129847|Krt24|75706|keratin 24	BC129848|Krt24|75706|keratin 24	NM_029393|Krt24|75706|keratin 24	AK010165|Krt24|75706|keratin 24
mm9_v1_chr7_+_22134391_22134391	0.110099	NKX2-3_NKX2-5.p2	NM_001166739|Vmn1r128|667199|vomeronasal 1 receptor 128
mm9_v1_chrX_+_132806184_132806337	0.110038	NKX2-3_NKX2-5.p2	L10905|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr16_+_57152994_57153228	0.108976	NKX2-3_NKX2-5.p2	BC025450|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK011763|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm9_v1_chr10_+_86984705_86984718	0.108866	NKX2-3_NKX2-5.p2	X51942|Pah|18478|phenylalanine hydroxylase
mm9_v1_chr18_+_43923976_43923988	0.108492	NKX2-3_NKX2-5.p2	AK136373|Scgb3a2|117158|secretoglobin, family 3A, member 2	AK136396|Scgb3a2|117158|secretoglobin, family 3A, member 2	AF274959|Scgb3a2|117158|secretoglobin, family 3A, member 2	AF274960|Scgb3a2|117158|secretoglobin, family 3A, member 2	AF274961|Scgb3a2|117158|secretoglobin, family 3A, member 2	BC061046|Scgb3a2|117158|secretoglobin, family 3A, member 2	NM_054038|Scgb3a2|117158|secretoglobin, family 3A, member 2	AF439546|Scgb3a2|117158|secretoglobin, family 3A, member 2
mm9_v1_chr19_-_8479532_8479600	0.107444	NKX2-3_NKX2-5.p2	BC132146|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	BC132336|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	BC016496|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	BC050265|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	AK052592|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	AK040781|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	AK050438|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	AK080180|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	NM_177002|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene	AK057654|C730048C13Rik|319800|RIKEN cDNA C730048C13 gene
mm9_v1_chr9_+_72859850_72859978	0.10679	NKX2-3_NKX2-5.p2	BC006717|Ccpg1|72278|cell cycle progression 1
mm9_v1_chr6_+_134874663_134874674	0.106311	NKX2-3_NKX2-5.p2	AK154276|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	AK169586|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B
mm9_v1_chr3_+_51219971_51220063	0.104895	NKX2-3_NKX2-5.p2	AF510858|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit	BC050017|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm9_v1_chr1_-_174149989_174150025	0.10403	NKX2-3_NKX2-5.p2	NM_009813|Casq1|12372|calsequestrin 1
mm9_v1_chr13_-_56649769_56649811	0.10345	NKX2-3_NKX2-5.p2	AB009688|Lect2|16841|leukocyte cell-derived chemotaxin 2	AF035161|Lect2|16841|leukocyte cell-derived chemotaxin 2	AK131971|Lect2|16841|leukocyte cell-derived chemotaxin 2
mm9_v1_chr9_+_54452124_54452126	0.103167	NKX2-3_NKX2-5.p2	
mm9_v1_chr11_-_121380601_121380655	0.102524	NKX2-3_NKX2-5.p2	AK037240|Zfp750|319530|zinc finger protein 750	AK028879|Zfp750|319530|zinc finger protein 750	AK030690|Zfp750|319530|zinc finger protein 750	BC080834|Zfp750|319530|zinc finger protein 750	AK037185|Zfp750|319530|zinc finger protein 750	AK076268|Zfp750|319530|zinc finger protein 750	AK140792|Zfp750|319530|zinc finger protein 750	NM_178763|Zfp750|319530|zinc finger protein 750
mm9_v1_chr9_-_70782614_70782614	0.101433	NKX2-3_NKX2-5.p2	BC021841|Lipc|15450|lipase, hepatic	NM_008280|Lipc|15450|lipase, hepatic
mm9_v1_chr5_+_58109246_58109263	0.101419	NKX2-3_NKX2-5.p2	NM_001122758|Pcdh7|54216|protocadherin 7	NM_018764|Pcdh7|54216|protocadherin 7
mm9_v1_chr18_-_9282615_9282806	0.0989191	NKX2-3_NKX2-5.p2	AJ414562|Gjd4|225152|gap junction protein, delta 4	AK053016|Gjd4|225152|gap junction protein, delta 4	BC137984|Gjd4|225152|gap junction protein, delta 4	AK034663|Gjd4|225152|gap junction protein, delta 4	NM_153086|Gjd4|225152|gap junction protein, delta 4
mm9_v1_chrM_+_13543_13577	0.0987918	NKX2-3_NKX2-5.p2	
mm9_v1_chr13_+_54203236_54203344	0.098672	NKX2-3_NKX2-5.p2	AK048238|Sfxn1|14057|sideroflexin 1
mm9_v1_chr11_-_115884712_115884736	0.0976597	NKX2-3_NKX2-5.p2	AK213191|H3f3b|15081|H3 histone, family 3B
mm9_v1_chr14_-_96918064_96918252	0.0965408	NKX2-3_NKX2-5.p2	AK031932|Klhl1|93688|kelch-like 1 (Drosophila)	AF252281|Klhl1|93688|kelch-like 1 (Drosophila)	BC094584|Klhl1|93688|kelch-like 1 (Drosophila)	NM_053105|Klhl1|93688|kelch-like 1 (Drosophila)
mm9_v1_chr4_-_155574875_155574926	0.0964055	NKX2-3_NKX2-5.p2	BC083156|Isg15|100038882|ISG15 ubiquitin-like modifier	BC109346|Isg15|100038882|ISG15 ubiquitin-like modifier	BC031424|Isg15|100038882|ISG15 ubiquitin-like modifier	X56602|Isg15|100038882|ISG15 ubiquitin-like modifier	NM_015783|Isg15|100038882|ISG15 ubiquitin-like modifier
mm9_v1_chr18_+_35750071_35750097	0.0958315	NKX2-3_NKX2-5.p2	AK166063|Matr3|17184|matrin 3
mm9_v1_chr9_+_54828686_54828686	0.0957652	NKX2-3_NKX2-5.p2	NM_176844|Chrna5|110835|cholinergic receptor, nicotinic, alpha polypeptide 5
mm9_v1_chr12_+_45412878_45412942	0.0955613	NKX2-3_NKX2-5.p2	AK033938|Pnpla8|67452|patatin-like phospholipase domain containing 8
mm9_v1_chr4_+_116381526_116381534	0.0944991	NKX2-3_NKX2-5.p2	BC022718|Ccdc163|68394|coiled-coil domain containing 163	BC022733|Ccdc163|68394|coiled-coil domain containing 163	NM_026714|Ccdc163|68394|coiled-coil domain containing 163
mm9_v1_chr6_-_123600652_123600652	0.0940888	NKX2-3_NKX2-5.p2	NM_001104637|Vmn2r22|546913|vomeronasal 2, receptor 22
mm9_v1_chr4_-_21694265_21694282	0.0934671	NKX2-3_NKX2-5.p2	AK011611|2610029I01Rik|77032|RIKEN cDNA 2610029I01 gene
mm9_v1_chr5_-_24606229_24606247	0.0933728	NKX2-3_NKX2-5.p2	BC015283|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm9_v1_chr19_+_40066913_40066929	0.0930774	NKX2-3_NKX2-5.p2	AK005017|Cyp2c37|13096|cytochrome P450, family 2. subfamily c, polypeptide 37	NM_010001|Cyp2c37|13096|cytochrome P450, family 2. subfamily c, polypeptide 37	BC057912|Cyp2c37|13096|cytochrome P450, family 2. subfamily c, polypeptide 37	AF047542|Cyp2c37|13096|cytochrome P450, family 2. subfamily c, polypeptide 37
mm9_v1_chr6_+_51494521_51494550	0.0927537	NKX2-3_NKX2-5.p2	AK028163|Snx10|71982|sorting nexin 10	NM_001127348|Snx10|71982|sorting nexin 10	NM_028035|Snx10|71982|sorting nexin 10	AK166121|Snx10|71982|sorting nexin 10
mm9_v1_chr1_+_85196183_85196282	0.0917534	NKX2-3_NKX2-5.p2	AK156961|Csprs|114564|component of Sp100-rs	NM_001081746|Gm7609|665378|predicted pseudogene 7609	X82357|Csprs|114564|component of Sp100-rs	BC059276|Gm7609|665378|predicted pseudogene 7609
mm9_v1_chr17_+_35610430_35610444	0.0910152	NKX2-3_NKX2-5.p2	J00392|H2-Q10|15007|histocompatibility 2, Q region locus 10
mm9_v1_chr6_-_6831907_6832001	0.0897598	NKX2-3_NKX2-5.p2	AF033011|Dlx5|13395|distal-less homeobox 5	AF022075|Dlx5|13395|distal-less homeobox 5	AF022076|Dlx5|13395|distal-less homeobox 5	AF022077|Dlx5|13395|distal-less homeobox 5	AK134920|Dlx5|13395|distal-less homeobox 5	AK158772|Dlx5|13395|distal-less homeobox 5
mm9_v1_chr13_+_55827167_55827225	0.0897512	NKX2-3_NKX2-5.p2	AK209800|Txndc15|69672|thioredoxin domain containing 15	AK213704|Txndc15|69672|thioredoxin domain containing 15	AK206830|Txndc15|69672|thioredoxin domain containing 15
mm9_v1_chr19_-_43986881_43986881	0.0885052	NKX2-3_NKX2-5.p2	AY383729|Dnmbp|71972|dynamin binding protein	NM_028029|Dnmbp|71972|dynamin binding protein
mm9_v1_chr2_-_154429368_154429412	0.0875621	NKX2-3_NKX2-5.p2	BC025796|Pxmp4|59038|peroxisomal membrane protein 4	AJ271476|Pxmp4|59038|peroxisomal membrane protein 4	AK143785|Pxmp4|59038|peroxisomal membrane protein 4	AK156743|Pxmp4|59038|peroxisomal membrane protein 4	AK050647|Pxmp4|59038|peroxisomal membrane protein 4	NM_021534|Pxmp4|59038|peroxisomal membrane protein 4
mm9_v1_chr6_+_106068758_106068758	0.0867128	NKX2-3_NKX2-5.p2	AK043507|Cntn4|269784|contactin 4	NM_001109751|Cntn4|269784|contactin 4
mm9_v1_chr15_+_101303908_101304071	0.0859075	NKX2-3_NKX2-5.p2	AK161149|Krt86|16679|keratin 86	NM_010667|Krt86|16679|keratin 86	BC139222|Krt86|16679|keratin 86	X99143|Krt86|16679|keratin 86
mm9_v1_chrX_+_16196823_16196987	0.0836099	NKX2-3_NKX2-5.p2	AK146612|Maoa|17161|monoamine oxidase A	NM_173740|Maoa|17161|monoamine oxidase A	BC029100|Maoa|17161|monoamine oxidase A	AK004337|Maoa|17161|monoamine oxidase A	AK155052|Maoa|17161|monoamine oxidase A	AK164457|Maoa|17161|monoamine oxidase A
mm9_v1_chr14_+_5153653_5153668	0.0823761	NKX2-3_NKX2-5.p2	NM_175393|4930555G01Rik|108978|RIKEN cDNA 4930555G01 gene	AK076920|4930555G01Rik|108978|RIKEN cDNA 4930555G01 gene
mm9_v1_chr18_-_6202199_6202203	0.0821356	NKX2-3_NKX2-5.p2	AK038217|Kif5b|16573|kinesin family member 5B
mm9_v1_chr6_-_123483423_123483423	0.0819381	NKX2-3_NKX2-5.p2	NM_001104635|Vmn2r21|546912|vomeronasal 2, receptor 21
mm9_v1_chr13_-_52830967_52830973	0.0807666	NKX2-3_NKX2-5.p2	AK035379|BB123696|105404|expressed sequence BB123696	AK035711|BB123696|105404|expressed sequence BB123696	AK035638|BB123696|105404|expressed sequence BB123696
mm9_v1_chr8_-_108462291_108462291	0.0805536	NKX2-3_NKX2-5.p2	NM_013640|Psmb10|19171|proteasome (prosome, macropain) subunit, beta type 10
mm9_v1_chr14_-_60845511_60845640	0.0800575	NKX2-3_NKX2-5.p2	AK145818|BC010981|407830|cDNA sequence BC010981
mm9_v1_chrX_-_7258126_7258153	0.0796171	NKX2-3_NKX2-5.p2	BC132580|Magix|54634|MAGI family member, X-linked	BC132582|Magix|54634|MAGI family member, X-linked
mm9_v1_chr7_+_109044853_109044944	0.0794497	NKX2-3_NKX2-5.p2	AK139635|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	NM_027532|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	AK135201|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	AK014309|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	BC080730|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene
mm9_v1_chr7_-_135034440_135034483	0.0792128	NKX2-3_NKX2-5.p2	AK220244|Prss53|330657|protease, serine, 53	BC147509|Prss53|330657|protease, serine, 53	BC151010|Prss53|330657|protease, serine, 53	BC151017|Prss53|330657|protease, serine, 53	BC172059|Prss53|330657|protease, serine, 53	NM_001081268|Prss53|330657|protease, serine, 53
mm9_v1_chr2_-_20889276_20889347	0.0778997	NKX2-3_NKX2-5.p2	BC150741|Arhgap21|71435|Rho GTPase activating protein 21	BC076629|Arhgap21|71435|Rho GTPase activating protein 21	NM_001081364|Arhgap21|71435|Rho GTPase activating protein 21	NM_001128084|Arhgap21|71435|Rho GTPase activating protein 21
mm9_v1_chr12_+_103708119_103708119	0.0773287	NKX2-3_NKX2-5.p2	BC086782|Golga5|27277|golgi autoantigen, golgin subfamily a, 5	NM_013747|Golga5|27277|golgi autoantigen, golgin subfamily a, 5
mm9_v1_chr2_+_109120894_109121025	0.0770419	NKX2-3_NKX2-5.p2	BC016095|Kif18a|228421|kinesin family member 18A	NM_139303|Kif18a|228421|kinesin family member 18A	AK049197|Kif18a|228421|kinesin family member 18A	AK135735|Kif18a|228421|kinesin family member 18A	AK082913|Kif18a|228421|kinesin family member 18A	AK041469|Kif18a|228421|kinesin family member 18A	AK044795|Kif18a|228421|kinesin family member 18A	AK164649|Kif18a|228421|kinesin family member 18A	AK036722|Kif18a|228421|kinesin family member 18A	AK164114|Kif18a|228421|kinesin family member 18A
mm9_v1_chr10_+_90564953_90564975	0.0753954	NKX2-3_NKX2-5.p2	AK209988|Ikbip|67454|IKBKB interacting protein
mm9_v1_chr13_-_115078961_115078988	0.0749495	NKX2-3_NKX2-5.p2	AK035175|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4
mm9_v1_chr4_+_124336307_124336326	0.0745937	NKX2-3_NKX2-5.p2	AK140274|Pou3f1|18991|POU domain, class 3, transcription factor 1
mm9_v1_chr19_+_34175422_34175462	0.0742528	NKX2-3_NKX2-5.p2	AK019504|Lipm|78753|lipase, family member M	AK037091|Lipm|78753|lipase, family member M	NM_023903|Lipm|78753|lipase, family member M	AK037214|Lipm|78753|lipase, family member M	AK085719|Lipm|78753|lipase, family member M	BC031933|Lipm|78753|lipase, family member M
mm9_v1_chr2_-_30952019_30952019	0.0730455	NKX2-3_NKX2-5.p2	AK143512|Fnbp1|14269|formin binding protein 1	NM_001177650|Fnbp1|14269|formin binding protein 1
mm9_v1_chr1_+_87423176_87423243	0.0727208	NKX2-3_NKX2-5.p2	AK156961|Csprs|114564|component of Sp100-rs
mm9_v1_chr5_-_135096084_135096090	0.0723562	NKX2-3_NKX2-5.p2	
mm9_v1_chr1_-_179178874_179178897	0.0718178	NKX2-3_NKX2-5.p2	AF124142|Akt3|23797|thymoma viral proto-oncogene 3	BC066861|Akt3|23797|thymoma viral proto-oncogene 3	NM_011785|Akt3|23797|thymoma viral proto-oncogene 3
mm9_v1_chr12_-_16747022_16747030	0.071672	NKX2-3_NKX2-5.p2	AK147337|Greb1|268527|gene regulated by estrogen in breast cancer protein
mm9_v1_chr7_-_13619936_13620150	0.0705456	NKX2-3_NKX2-5.p2	BC012230|Chmp2a|68953|chromatin modifying protein 2A	AK005267|Chmp2a|68953|chromatin modifying protein 2A	NM_026885|Chmp2a|68953|chromatin modifying protein 2A
mm9_v1_chr3_-_64523523_64523523	0.069958	NKX2-3_NKX2-5.p2	NM_175674|Vmn2r7|319217|vomeronasal 2, receptor 7
mm9_v1_chr11_-_21270779_21270881	0.069929	NKX2-3_NKX2-5.p2	NM_139297|Ugp2|216558|UDP-glucose pyrophosphorylase 2
mm9_v1_chr11_+_20443315_20443422	0.0697588	NKX2-3_NKX2-5.p2	AB041541|Sertad2|58172|SERTA domain containing 2	BC014726|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr3_-_64363739_64363739	0.0685054	NKX2-3_NKX2-5.p2	NM_001104619|Vmn2r6|667069|vomeronasal 2, receptor 6
mm9_v1_chr10_-_30320470_30320554	0.0670014	NKX2-3_NKX2-5.p2	BC048703|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	AK014181|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	AK010722|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	AK032943|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	AF532979|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	NM_028604|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)
mm9_v1_chr14_-_73762933_73762949	0.0667642	NKX2-3_NKX2-5.p2	AK002796|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr3_+_95465860_95465866	0.0653478	NKX2-3_NKX2-5.p2	AK160634|Mcl1|17210|myeloid cell leukemia sequence 1
mm9_v1_chr1_-_155698278_155698324	0.0635225	NKX2-3_NKX2-5.p2	BC120491|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	BC131905|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	AJ554213|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	AK136655|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	AK136685|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	DQ402363|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	NM_178243|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene
mm9_v1_chr18_-_6240993_6241298	0.0633146	NKX2-3_NKX2-5.p2	AK185672|Kif5b|16573|kinesin family member 5B	AK177424|Kif5b|16573|kinesin family member 5B	L27153|Kif5b|16573|kinesin family member 5B
mm9_v1_chrX_-_45388010_45388030	0.0614471	NKX2-3_NKX2-5.p2	BC020015|Apln|30878|apelin	DQ832282|Apln|30878|apelin	NM_013912|Apln|30878|apelin	AK042076|Apln|30878|apelin
mm9_v1_chr6_+_37820779_37820898	0.0609886	NKX2-3_NKX2-5.p2	AK080890|Trim24|21848|tripartite motif-containing 24	NM_145076|Trim24|21848|tripartite motif-containing 24	S78219|Trim24|21848|tripartite motif-containing 24	S78221|Trim24|21848|tripartite motif-containing 24	AK084870|Trim24|21848|tripartite motif-containing 24	BC056959|Trim24|21848|tripartite motif-containing 24
mm9_v1_chr8_-_8667108_8667134	0.0604365	NKX2-3_NKX2-5.p2	AK034581|Arglu1|234023|arginine and glutamate rich 1
mm9_v1_chr17_+_44090192_44090211	0.0579831	NKX2-3_NKX2-5.p2	AB061524|Rcan2|53901|regulator of calcineurin 2	AK049006|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr9_-_58049521_58049605	0.0568109	NKX2-3_NKX2-5.p2	BC096531|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	NM_001161535|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	NM_001161537|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	NM_001161540|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2
mm9_v1_chr14_-_37935305_37935311	0.0560629	NKX2-3_NKX2-5.p2	
mm9_v1_chr8_+_123012667_123012765	0.0545848	NKX2-3_NKX2-5.p2	BC043094|Gse1|382034|genetic suppressor element 1	NM_198671|Gse1|382034|genetic suppressor element 1
mm9_v1_chr13_-_98669545_98669547	0.0534547	NKX2-3_NKX2-5.p2	AK020332|Rgnef|110596|Rho-guanine nucleotide exchange factor
mm9_v1_chr8_-_35153699_35153753	0.0527778	NKX2-3_NKX2-5.p2	
mm9_v1_chr7_-_11242322_11242322	0.0523516	NKX2-3_NKX2-5.p2	NM_001110020|Gm6900|628596|predicted gene 6900
mm9_v1_chr5_-_87919883_87919895	0.0510352	NKX2-3_NKX2-5.p2	BC048926|Ugt2a1|94215|UDP glucuronosyltransferase 2 family, polypeptide A1	AK140757|Ugt2a1|94215|UDP glucuronosyltransferase 2 family, polypeptide A1	NM_053184|Ugt2a1|94215|UDP glucuronosyltransferase 2 family, polypeptide A1
mm9_v1_chr16_-_56690646_56690662	0.0505421	NKX2-3_NKX2-5.p2	
mm9_v1_chr7_-_139768035_139768106	0.0504594	NKX2-3_NKX2-5.p2	AK128914|Oat|18242|ornithine aminotransferase	AK145877|Oat|18242|ornithine aminotransferase	NM_016978|Oat|18242|ornithine aminotransferase
mm9_v1_chr1_+_87546558_87546676	0.048958	NKX2-3_NKX2-5.p2	AK042095|Sp100|20684|nuclear antigen Sp100	AK080004|Sp100|20684|nuclear antigen Sp100	AK152348|Sp100|20684|nuclear antigen Sp100	U83630|Sp100|20684|nuclear antigen Sp100	AK146054|Sp100|20684|nuclear antigen Sp100	AK153487|Sp100|20684|nuclear antigen Sp100	BC069183|Sp100|20684|nuclear antigen Sp100	AK083304|Sp100|20684|nuclear antigen Sp100	NM_013673|Sp100|20684|nuclear antigen Sp100	CT010199|Sp100|20684|nuclear antigen Sp100	U83636|Sp100|20684|nuclear antigen Sp100
mm9_v1_chr14_-_50403002_50403057	0.0486793	NKX2-3_NKX2-5.p2	AK014402|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	BC023359|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK028178|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK032093|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	NM_026142|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK028180|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK049427|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK014563|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene
mm9_v1_chr17_+_44090341_44090399	0.0485943	NKX2-3_NKX2-5.p2	BC047153|Rcan2|53901|regulator of calcineurin 2	AF237887|Rcan2|53901|regulator of calcineurin 2	AF237791|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr11_-_101634938_101634966	0.0482551	NKX2-3_NKX2-5.p2	BC068248|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)
mm9_v1_chr2_-_25095376_25095416	0.0480571	NKX2-3_NKX2-5.p2	AK003658|2310002J15Rik|67859|RIKEN cDNA 2310002J15 gene	AK009095|2310002J15Rik|67859|RIKEN cDNA 2310002J15 gene	BC117777|2310002J15Rik|67859|RIKEN cDNA 2310002J15 gene	BC117778|2310002J15Rik|67859|RIKEN cDNA 2310002J15 gene	NM_026415|2310002J15Rik|67859|RIKEN cDNA 2310002J15 gene
mm9_v1_chr6_-_6832067_6832086	0.0472975	NKX2-3_NKX2-5.p2	AF072452|Dlx5|13395|distal-less homeobox 5	AF072453|Dlx5|13395|distal-less homeobox 5	NM_010056|Dlx5|13395|distal-less homeobox 5	NM_198854|Dlx5|13395|distal-less homeobox 5	AK158121|Dlx5|13395|distal-less homeobox 5	U67840|Dlx5|13395|distal-less homeobox 5
mm9_v1_chr9_-_112088452_112088452	0.0455973	NKX2-3_NKX2-5.p2	NM_001177618|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chr5_+_97520188_97520241	0.0452706	NKX2-3_NKX2-5.p2	AK132786|Bmp2k|140780|BMP2 inducible kinase
mm9_v1_chr2_-_35959513_35959579	0.0447907	NKX2-3_NKX2-5.p2	BC065077|Lhx6|16874|LIM homeobox protein 6	AB031039|Lhx6|16874|LIM homeobox protein 6	AB031040|Lhx6|16874|LIM homeobox protein 6	NM_001083126|Lhx6|16874|LIM homeobox protein 6	NM_001083127|Lhx6|16874|LIM homeobox protein 6
mm9_v1_chr5_-_24606422_24606505	0.0441664	NKX2-3_NKX2-5.p2	AK154296|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	NM_145401|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm9_v1_chr5_-_87911282_87911282	0.0431119	NKX2-3_NKX2-5.p2	BC048920|Ugt2a2|552899|UDP glucuronosyltransferase 2 family, polypeptide A2	BC058786|Ugt2a2|552899|UDP glucuronosyltransferase 2 family, polypeptide A2	NM_001024148|Ugt2a2|552899|UDP glucuronosyltransferase 2 family, polypeptide A2
mm9_v1_chr15_-_12479631_12479703	0.0430218	NKX2-3_NKX2-5.p2	AK021207|Pdzd2|68070|PDZ domain containing 2
mm9_v1_chr10_+_127335573_127335617	0.042911	NKX2-3_NKX2-5.p2	AK037184|Sdr9c7|70061|4short chain dehydrogenase/reductase family 9C, member 7	BC064820|Sdr9c7|70061|4short chain dehydrogenase/reductase family 9C, member 7	NM_027301|Sdr9c7|70061|4short chain dehydrogenase/reductase family 9C, member 7	AY044433|Sdr9c7|70061|4short chain dehydrogenase/reductase family 9C, member 7
mm9_v1_chrX_+_91881454_91881500	0.0425596	NKX2-3_NKX2-5.p2	BC117825|Gspt2|14853|G1 to S phase transition 2	BC117826|Gspt2|14853|G1 to S phase transition 2
mm9_v1_chr19_-_31839462_31839522	0.0412116	NKX2-3_NKX2-5.p2	AK051624|Prkg1|19091|protein kinase, cGMP-dependent, type I	AK083991|Prkg1|19091|protein kinase, cGMP-dependent, type I	NM_001013833|Prkg1|19091|protein kinase, cGMP-dependent, type I
mm9_v1_chr14_+_26484518_26484659	0.0408964	NKX2-3_NKX2-5.p2	AK132106|Gm10397|100038401|predicted gene 10397
mm9_v1_chr16_+_31428882_31428885	0.0401816	NKX2-3_NKX2-5.p2	AK009575|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr18_+_35750406_35750586	0.0401705	NKX2-3_NKX2-5.p2	AK139050|Matr3|17184|matrin 3	AK084822|Matr3|17184|matrin 3	AK148059|Matr3|17184|matrin 3
mm9_v1_chr3_+_59835700_59835727	0.0376262	NKX2-3_NKX2-5.p2	NM_023383|Aadac|67758|arylacetamide deacetylase (esterase)	AK008244|Aadac|67758|arylacetamide deacetylase (esterase)	BC054823|Aadac|67758|arylacetamide deacetylase (esterase)	BC019999|Aadac|67758|arylacetamide deacetylase (esterase)
mm9_v1_chr16_-_4213389_4213406	0.0375506	NKX2-3_NKX2-5.p2	BC072594|Crebbp|12914|CREB binding protein	NM_001025432|Crebbp|12914|CREB binding protein	BC010297|Crebbp|12914|CREB binding protein
mm9_v1_chr13_+_41744811_41744811	0.0368819	NKX2-3_NKX2-5.p2	AK037195|Gm5082|328231|predicted gene 5082	NM_177808|Gm5082|328231|predicted gene 5082
mm9_v1_chr7_-_22919759_22919759	0.0366555	NKX2-3_NKX2-5.p2	NM_001167573|Gm10666|100043037|predicted gene 10666	NM_207547|Vmn1r93|404290|vomernasal 1 receptor Vmn1r93
mm9_v1_chr6_-_51413182_51413233	0.03638	NKX2-3_NKX2-5.p2	AK049735|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr11_-_11798101_11798104	0.0359853	NKX2-3_NKX2-5.p2	BC060989|Ddc|13195|dopa decarboxylase
mm9_v1_chr7_-_21060272_21060273	0.0346277	NKX2-3_NKX2-5.p2	BC107204|Gm10670|100042971|predicted gene 10670	NM_001167160|Gm10665|100043058|predicted gene 10665	NM_001167161|Gm10670|100042971|predicted gene 10670
mm9_v1_chr14_+_34030008_34030008	0.0344793	NKX2-3_NKX2-5.p2	AK046097|Arhgap22|239027|Rho GTPase activating protein 22	NM_153800|Arhgap22|239027|Rho GTPase activating protein 22
mm9_v1_chr7_-_34926107_34926132	0.0343203	NKX2-3_NKX2-5.p2	AK218279|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK208593|Uba2|50995|ubiquitin-like modifier activating enzyme 2
mm9_v1_chr3_-_153993432_153993614	0.0342982	NKX2-3_NKX2-5.p2	BC125281|Lhx8|16875|LIM homeobox protein 8	BC125283|Lhx8|16875|LIM homeobox protein 8	BC144768|Lhx8|16875|LIM homeobox protein 8	D49658|Lhx8|16875|LIM homeobox protein 8	AK165733|Lhx8|16875|LIM homeobox protein 8	AK160121|Lhx8|16875|LIM homeobox protein 8	NM_010713|Lhx8|16875|LIM homeobox protein 8	AJ000338|Lhx8|16875|LIM homeobox protein 8
mm9_v1_chr3_-_154718282_154718370	0.0336441	NKX2-3_NKX2-5.p2	AK052882|Tnni3k|435766|TNNI3 interacting kinase	BC139368|Tnni3k|435766|TNNI3 interacting kinase	BC139394|Tnni3k|435766|TNNI3 interacting kinase	AK084817|Tnni3k|435766|TNNI3 interacting kinase	AY526095|Tnni3k|435766|TNNI3 interacting kinase	AY526096|Tnni3k|435766|TNNI3 interacting kinase	NM_177066|Tnni3k|435766|TNNI3 interacting kinase
mm9_v1_chr1_+_182685912_182685968	0.0331768	NKX2-3_NKX2-5.p2	AK017899|5830405M20Rik|74749|RIKEN cDNA 5830405M20 gene
mm9_v1_chr7_-_22086485_22086485	0.0317026	NKX2-3_NKX2-5.p2	NM_001166838|Vmn1r126|100043013|vomeronasal 1 receptor 126	NM_001167164|Gm4214|100043079|predicted gene 4214	NM_001167165|Gm4175|100043019|predicted gene 4175
mm9_v1_chr7_-_21883531_21883531	0.0315079	NKX2-3_NKX2-5.p2	NM_001166741|Vmn1r121|667240|vomeronasal 1 receptor 121
mm9_v1_chr2_+_105744791_105744850	0.0313416	NKX2-3_NKX2-5.p2	AK005356|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011278|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	NM_028260|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011382|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK078300|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011466|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK015978|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011618|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011872|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011420|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK135670|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK009570|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK010075|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK012181|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK168202|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	BC008259|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
mm9_v1_chr5_-_115119973_115120071	0.0299628	NKX2-3_NKX2-5.p2	AK189496|Gltp|56356|glycolipid transfer protein
mm9_v1_chr1_-_39608846_39608882	0.0298205	NKX2-3_NKX2-5.p2	AK040602|Rnf149|67702|ring finger protein 149
mm9_v1_chr5_+_90947970_90948068	0.0283937	NKX2-3_NKX2-5.p2	AK143987|Afm|280662|afamin	BC100597|Afm|280662|afamin	NM_145146|Afm|280662|afamin	BC026681|Afm|280662|afamin
mm9_v1_chr7_-_109713935_109713982	0.0254577	NKX2-3_NKX2-5.p2	BC010580|Trim21|20821|tripartite motif-containing 21	L27990|Trim21|20821|tripartite motif-containing 21	AK150484|Trim21|20821|tripartite motif-containing 21	AK171489|Trim21|20821|tripartite motif-containing 21	AK152619|Trim21|20821|tripartite motif-containing 21	AK141294|Trim21|20821|tripartite motif-containing 21	NM_001082552|Trim21|20821|tripartite motif-containing 21	NM_009277|Trim21|20821|tripartite motif-containing 21
mm9_v1_chrX_+_104344265_104344265	0.0250021	NKX2-3_NKX2-5.p2	NM_001122596|A630033H20Rik|213438|RIKEN cDNA A630033H20 gene
mm9_v1_chr7_-_97103461_97103540	0.0243274	NKX2-3_NKX2-5.p2	
mm9_v1_chr9_-_119893775_119893775	0.0242057	NKX2-3_NKX2-5.p2	BC050066|Csrnp1|215418|cysteine-serine-rich nuclear protein 1	NM_153287|Csrnp1|215418|cysteine-serine-rich nuclear protein 1
mm9_v1_chr18_+_61847568_61847591	0.0241539	NKX2-3_NKX2-5.p2	AK003506|Il17b|56069|interleukin 17B	AF184970|Il17b|56069|interleukin 17B	AF218726|Il17b|56069|interleukin 17B	BC002271|Il17b|56069|interleukin 17B	NM_019508|Il17b|56069|interleukin 17B	AF250308|Il17b|56069|interleukin 17B
mm9_v1_chr2_-_29103559_29103618	0.0231477	NKX2-3_NKX2-5.p2	AB052336|Ntng2|171171|netrin G2	AB052337|Ntng2|171171|netrin G2	AB052338|Ntng2|171171|netrin G2	AF475079|Ntng2|171171|netrin G2	AF475080|Ntng2|171171|netrin G2	NM_133500|Ntng2|171171|netrin G2	NM_133501|Ntng2|171171|netrin G2	BC141258|Ntng2|171171|netrin G2	BC145600|Ntng2|171171|netrin G2
mm9_v1_chr7_-_106987766_106987861	0.0217639	NKX2-3_NKX2-5.p2	AK180141|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm9_v1_chr7_-_34987169_34987529	0.0210229	NKX2-3_NKX2-5.p2	
mm9_v1_chr12_+_25659777_25659836	0.0205905	NKX2-3_NKX2-5.p2	AK021172|Kidins220|77480|kinase D-interacting substrate 220	NM_001081378|Kidins220|77480|kinase D-interacting substrate 220	BC157898|Kidins220|77480|kinase D-interacting substrate 220
mm9_v1_chr19_-_14671832_14671910	0.0198972	NKX2-3_NKX2-5.p2	AF229633|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chr6_+_123122910_123123040	0.0186419	NKX2-3_NKX2-5.p2	AK156711|Clec4b2|381809|C-type lectin domain family 4, member b2	AY365133|Clec4b2|381809|C-type lectin domain family 4, member b2	NM_001004159|Clec4b2|381809|C-type lectin domain family 4, member b2
mm9_v1_chr8_-_119098475_119098517	0.0177785	NKX2-3_NKX2-5.p2	
mm9_v1_chr15_+_80453912_80453951	0.0157967	NKX2-3_NKX2-5.p2	AF055465|Grap2|17444|GRB2-related adaptor protein 2	NM_010815|Grap2|17444|GRB2-related adaptor protein 2	AK156939|Grap2|17444|GRB2-related adaptor protein 2	AJ011735|Grap2|17444|GRB2-related adaptor protein 2	AF129477|Grap2|17444|GRB2-related adaptor protein 2	AF236118|Grap2|17444|GRB2-related adaptor protein 2
mm9_v1_chr6_-_89890500_89890500	0.0136135	NKX2-3_NKX2-5.p2	NM_011684|Vmn1r45|22297|vomeronasal 1 receptor 45
mm9_v1_chr10_-_84590718_84590771	0.01207	NKX2-3_NKX2-5.p2	BC046619|Mterfd3|74238|MTERF domain containing 3	AK047778|Mterfd3|74238|MTERF domain containing 3	AK039816|Mterfd3|74238|MTERF domain containing 3	NM_028832|Mterfd3|74238|MTERF domain containing 3
mm9_v1_chr1_-_154472199_154472354	0.0108846	NKX2-3_NKX2-5.p2	BC017678|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	NM_016846|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	U14103|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	AK169109|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	AK169180|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	AK144218|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1
mm9_v1_chr5_-_143987485_143987560	0.0102798	NKX2-3_NKX2-5.p2	AY820308|Spdyb|74673|speedy homolog B (Xenopus laevis)	AK015441|Spdyb|74673|speedy homolog B (Xenopus laevis)	NM_029048|Spdyb|74673|speedy homolog B (Xenopus laevis)
mm9_v1_chr19_-_4287408_4287579	0.0101085	NKX2-3_NKX2-5.p2	AK153543|Adrbk1|110355|adrenergic receptor kinase, beta 1
mm9_v1_chr11_-_11798035_11798088	0.00936975	NKX2-3_NKX2-5.p2	AF012881|Ddc|13195|dopa decarboxylase	BC089594|Ddc|13195|dopa decarboxylase
mm9_v1_chr11_-_53432145_53432166	0.00922067	NKX2-3_NKX2-5.p2	AB174765|Il4|16189|interleukin 4	BC027514|Il4|16189|interleukin 4	AF352783|Il4|16189|interleukin 4	M13238|Il4|16189|interleukin 4	NM_021283|Il4|16189|interleukin 4	X03532|Il4|16189|interleukin 4
mm9_v1_chr1_-_42749940_42749978	0.00755343	NKX2-3_NKX2-5.p2	BC059892|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	BC058417|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr3_-_64213978_64213978	0.00730248	NKX2-3_NKX2-5.p2	NM_001104615|Vmn2r4|637053|vomeronasal 2, receptor 4
mm9_v1_chr4_+_34497840_34497946	0.00680172	NKX2-3_NKX2-5.p2	NM_001007589|Akirin2|433693|akirin 2	BC082305|Akirin2|433693|akirin 2
mm9_v1_chr8_-_119606348_119606348	0.0059614	NKX2-3_NKX2-5.p2	AY164484|Pkd1l2|76645|polycystic kidney disease 1 like 2	NM_029686|Pkd1l2|76645|polycystic kidney disease 1 like 2
mm9_v1_chr17_-_57163687_57163784	0.00507777	NKX2-3_NKX2-5.p2	BC064454|Khsrp|16549|KH-type splicing regulatory protein
mm9_v1_chr6_+_17587046_17587119	0.00428319	NKX2-3_NKX2-5.p2	AK150587|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	BC082589|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	NM_007604|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AK007550|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AY544984|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AK008204|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2
mm9_v1_chr1_+_193541845_193542002	0.00410512	NKX2-3_NKX2-5.p2	AK133814|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	NM_172266|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1
mm9_v1_chr12_+_75028976_75029036	0.00408085	NKX2-3_NKX2-5.p2	AK076395|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr15_+_102807462_102807462	0.00205934	NKX2-3_NKX2-5.p2	BC050838|Hoxc9|15427|homeobox C9	NM_008272|Hoxc9|15427|homeobox C9
mm9_v1_chr2_-_154429414_154429464	0.00131261	NKX2-3_NKX2-5.p2	AK003127|Pxmp4|59038|peroxisomal membrane protein 4	AK019381|Pxmp4|59038|peroxisomal membrane protein 4	AK013793|Pxmp4|59038|peroxisomal membrane protein 4
mm9_v1_chr18_+_34932278_34932429	0.00107685	NKX2-3_NKX2-5.p2	AK012724|Fam53c|66306|family with sequence similarity 53, member C	AK205811|Fam53c|66306|family with sequence similarity 53, member C
mm9_v1_chr3_-_91927868_91927868	2.15013e-05	NKX2-3_NKX2-5.p2	AK079463|Prr9|109314|proline rich 9	NM_175424|Prr9|109314|proline rich 9
