mm9_v1_chr9_-_52484889_52484906	22.0284	NKX3-1.p2	AK053489|AI593442|330941|expressed sequence AI593442
mm9_v1_chr8_+_56040193_56040201	21.538	NKX3-1.p2	AK081877|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr8_+_56040211_56040342	20.623	NKX3-1.p2	BC043130|Gpm6a|234267|glycoprotein m6a	AK147245|Gpm6a|234267|glycoprotein m6a	AK147280|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr13_+_59234737_59234835	19.5085	NKX3-1.p2	AK021108|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr12_+_110798661_110798666	18.7329	NKX3-1.p2	AK019916|Meg3|17263|maternally expressed 3
mm9_v1_chr13_+_42961598_42961632	17.1271	NKX3-1.p2	AK139452|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr6_-_126658429_126658452	16.5006	NKX3-1.p2	
mm9_v1_chr12_-_73509537_73509656	16.4688	NKX3-1.p2	AB074899|Rtn1|104001|reticulon 1	CT010392|Rtn1|104001|reticulon 1	BC030455|Rtn1|104001|reticulon 1
mm9_v1_chr8_+_56040080_56040120	15.5705	NKX3-1.p2	NM_153581|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr15_-_44584003_44584003	13.8894	NKX3-1.p2	AB232449|Sybu|319613|syntabulin (syntaxin-interacting)	BC065045|Sybu|319613|syntabulin (syntaxin-interacting)	NM_178765|Sybu|319613|syntabulin (syntaxin-interacting)
mm9_v1_chr18_+_37663917_37664076	13.1509	NKX3-1.p2	AK045399|Pcdhb20|93891|protocadherin beta 20	NM_053145|Pcdhb20|93891|protocadherin beta 20	AK046137|Pcdhb20|93891|protocadherin beta 20	AF326313|Pcdhb20|93891|protocadherin beta 20	AK045527|Pcdhb20|93891|protocadherin beta 20	BC031895|Pcdhb20|93891|protocadherin beta 20	AY013782|Pcdhb20|93891|protocadherin beta 20
mm9_v1_chr17_-_85461840_85461859	12.8786	NKX3-1.p2	AK019367|Prepl|213760|prolyl endopeptidase-like
mm9_v1_chr4_-_109959185_109959241	12.5504	NKX3-1.p2	D31953|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK014133|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	DQ437511|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr18_+_37157533_37157533	12.518	NKX3-1.p2	AY013767|Pcdha9|192161|protocadherin alpha 9	NM_138661|Pcdha9|192161|protocadherin alpha 9
mm9_v1_chr4_-_109959366_109959438	12.1786	NKX3-1.p2	BC048159|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163399|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_010488|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr4_-_136891931_136891995	12.0334	NKX3-1.p2	AK213611|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	M79301|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L11318|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L78075|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)
mm9_v1_chr3_-_113277601_113277686	11.4857	NKX3-1.p2	AK029642|Amy1|11722|amylase 1, salivary	NM_007446|Amy1|11722|amylase 1, salivary	V00719|Amy1|11722|amylase 1, salivary
mm9_v1_chrX_+_162782484_162782852	11.2937	NKX3-1.p2	NM_001177955|Gpm6b|14758|glycoprotein m6b	NM_001177956|Gpm6b|14758|glycoprotein m6b	NM_001177957|Gpm6b|14758|glycoprotein m6b	NM_001177958|Gpm6b|14758|glycoprotein m6b	NM_001177959|Gpm6b|14758|glycoprotein m6b	NM_001177960|Gpm6b|14758|glycoprotein m6b	AF254869|Gpm6b|14758|glycoprotein m6b	AF254870|Gpm6b|14758|glycoprotein m6b	AF254872|Gpm6b|14758|glycoprotein m6b	AF254873|Gpm6b|14758|glycoprotein m6b	AF254874|Gpm6b|14758|glycoprotein m6b	AF254875|Gpm6b|14758|glycoprotein m6b	AF254878|Gpm6b|14758|glycoprotein m6b	AF254879|Gpm6b|14758|glycoprotein m6b	AK013660|Gpm6b|14758|glycoprotein m6b	AK140714|Gpm6b|14758|glycoprotein m6b	S65737|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr3_-_59024076_59024180	11.0297	NKX3-1.p2	AK014807|P2ry12|70839|purinergic receptor P2Y, G-protein coupled 12
mm9_v1_chr12_+_101447480_101447584	10.801	NKX3-1.p2	BC021618|Calm1|12313|calmodulin 1
mm9_v1_chr12_+_101447413_101447431	10.7695	NKX3-1.p2	BC048752|Calm1|12313|calmodulin 1
mm9_v1_chr10_+_4978808_4978917	10.5365	NKX3-1.p2	AK148504|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr5_-_44162032_44162072	10.4362	NKX3-1.p2	BC023291|Fbxl5|242960|F-box and leucine-rich repeat protein 5
mm9_v1_chr11_-_97372344_97372370	10.3748	NKX3-1.p2	AK051643|Srcin1|56013|SRC kinase signaling inhibitor 1
mm9_v1_chr14_-_71029960_71029960	10.3129	NKX3-1.p2	BC016897|Epb4.9|13829|erythrocyte protein band 4.9	NM_013514|Epb4.9|13829|erythrocyte protein band 4.9
mm9_v1_chrX_-_40627962_40627962	10.2382	NKX3-1.p2	AB025410|Odz1|23963|odd Oz/ten-m homolog 1 (Drosophila)	NM_011855|Odz1|23963|odd Oz/ten-m homolog 1 (Drosophila)
mm9_v1_chr1_-_79436564_79436664	10.1095	NKX3-1.p2	BC048249|Scg2|20254|secretogranin II	BC014717|Scg2|20254|secretogranin II	NM_009129|Scg2|20254|secretogranin II
mm9_v1_chr2_-_79748552_79748555	9.24319	NKX3-1.p2	AK014810|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AF159298|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AY845863|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AY845864|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_001009978|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_001009979|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chr17_-_90487479_90487653	8.96967	NKX3-1.p2	AK032032|Nrxn1|18189|neurexin I
mm9_v1_chr6_-_92517359_92517359	8.71309	NKX3-1.p2	BC050793|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134461|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr4_-_96258099_96258268	8.27532	NKX3-1.p2	BC119556|Cyp2j9|74519|cytochrome P450, family 2, subfamily j, polypeptide 9	AK018422|Cyp2j9|74519|cytochrome P450, family 2, subfamily j, polypeptide 9	AK033961|Cyp2j9|74519|cytochrome P450, family 2, subfamily j, polypeptide 9	AF336850|Cyp2j9|74519|cytochrome P450, family 2, subfamily j, polypeptide 9	NM_028979|Cyp2j9|74519|cytochrome P450, family 2, subfamily j, polypeptide 9	AK037031|Cyp2j9|74519|cytochrome P450, family 2, subfamily j, polypeptide 9
mm9_v1_chr5_-_139606339_139606437	8.26668	NKX3-1.p2	AK158994|Prkar1b|19085|protein kinase, cAMP dependent regulatory, type I beta
mm9_v1_chr6_-_24905939_24906124	8.17319	NKX3-1.p2	BC147241|Tmem229a|319832|transmembrane protein 229A	BC147242|Tmem229a|319832|transmembrane protein 229A	AK140056|Tmem229a|319832|transmembrane protein 229A	AK087465|Tmem229a|319832|transmembrane protein 229A	NM_177013|Tmem229a|319832|transmembrane protein 229A
mm9_v1_chrX_-_147091911_147092125	7.71096	NKX3-1.p2	AK047777|Tro|56191|trophinin	AB036783|Tro|56191|trophinin	AF288605|Tro|56191|trophinin	AF288606|Tro|56191|trophinin	NM_001002272|Tro|56191|trophinin	NM_019548|Tro|56191|trophinin	BC075630|Tro|56191|trophinin
mm9_v1_chr8_-_55809700_55809720	7.6417	NKX3-1.p2	AK013889|Wdr17|244484|WD repeat domain 17	AK020995|Wdr17|244484|WD repeat domain 17	AK044241|Wdr17|244484|WD repeat domain 17	NM_001172152|Wdr17|244484|WD repeat domain 17
mm9_v1_chr19_+_30020236_30020283	7.39075	NKX3-1.p2	AK075849|Il33|77125|interleukin 33	NM_001164724|Il33|77125|interleukin 33
mm9_v1_chr19_-_41674337_41674343	7.34645	NKX3-1.p2	
mm9_v1_chr10_+_20760625_20760625	7.32432	NKX3-1.p2	AK161335|Ahi1|52906|Abelson helper integration site 1	NM_001177776|Ahi1|52906|Abelson helper integration site 1
mm9_v1_chr5_+_29524545_29524545	7.25705	NKX3-1.p2	AF190664|Rnf32|56874|ring finger protein 32	NM_021470|Rnf32|56874|ring finger protein 32
mm9_v1_chr7_+_107423813_107423829	7.17719	NKX3-1.p2	AK164085|Pgm2l1|70974|phosphoglucomutase 2-like 1
mm9_v1_chr11_+_104189978_104190032	7.01293	NKX3-1.p2	AK135147|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr3_+_13946371_13946410	7.00918	NKX3-1.p2	NM_001163329|Ralyl|76897|RALY RNA binding protein-like	NM_001163330|Ralyl|76897|RALY RNA binding protein-like	AK038465|Ralyl|76897|RALY RNA binding protein-like	BC052358|Ralyl|76897|RALY RNA binding protein-like
mm9_v1_chrX_-_100381703_100381961	6.74635	NKX3-1.p2	BC115708|Nap1l2|17954|nucleosome assembly protein 1-like 2	BC115761|Nap1l2|17954|nucleosome assembly protein 1-like 2	AK051439|Nap1l2|17954|nucleosome assembly protein 1-like 2	AK131621|Nap1l2|17954|nucleosome assembly protein 1-like 2	AK077430|Nap1l2|17954|nucleosome assembly protein 1-like 2
mm9_v1_chr12_+_110800212_110800261	6.64602	NKX3-1.p2	AK018142|Meg3|17263|maternally expressed 3
mm9_v1_chr7_-_125832234_125832286	6.01123	NKX3-1.p2	
mm9_v1_chr11_+_97702591_97702632	5.95427	NKX3-1.p2	AK081899|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK140210|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK042827|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK031146|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK035650|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK018341|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK080808|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK082773|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene
mm9_v1_chr14_+_76354807_76354815	5.91268	NKX3-1.p2	AK004465|Kctd4|67516|potassium channel tetramerisation domain containing 4	NM_026214|Kctd4|67516|potassium channel tetramerisation domain containing 4	AK008741|Kctd4|67516|potassium channel tetramerisation domain containing 4
mm9_v1_chr18_+_37105758_37105860	5.88611	NKX3-1.p2	AK129120|Pcdha3|192163|protocadherin alpha 3	BC141348|Pcdha3|192163|protocadherin alpha 3	AY013761|Pcdha3|192163|protocadherin alpha 3	NM_138662|Pcdha3|192163|protocadherin alpha 3
mm9_v1_chr1_+_9591347_9591354	5.88415	NKX3-1.p2	AK043759|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene	NM_178399|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene
mm9_v1_chr5_-_104543106_104543114	5.85663	NKX3-1.p2	NM_010097|Sparcl1|13602|SPARC-like 1
mm9_v1_chr1_-_42749940_42749978	5.82477	NKX3-1.p2	BC059892|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	BC058417|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr7_-_91520991_91521040	5.61013	NKX3-1.p2	AK032628|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2
mm9_v1_chr2_+_91386476_91386497	5.52249	NKX3-1.p2	BC017140|Ckap5|75786|cytoskeleton associated protein 5	BC089032|Ckap5|75786|cytoskeleton associated protein 5	NM_001165989|Ckap5|75786|cytoskeleton associated protein 5	NM_029437|Ckap5|75786|cytoskeleton associated protein 5	BC138334|Ckap5|75786|cytoskeleton associated protein 5	BC096422|Ckap5|75786|cytoskeleton associated protein 5
mm9_v1_chr2_-_79969095_79969127	5.48049	NKX3-1.p2	BC090628|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AK043647|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_016744|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chr8_-_48437701_48437701	5.47731	NKX3-1.p2	BC100572|Stox2|71069|storkhead box 2	BC100573|Stox2|71069|storkhead box 2	NM_175162|Stox2|71069|storkhead box 2
mm9_v1_chr13_-_108516475_108516490	5.41339	NKX3-1.p2	AK013620|Zswim6|67263|zinc finger, SWIM domain containing 6	AK019357|Zswim6|67263|zinc finger, SWIM domain containing 6
mm9_v1_chr18_+_37133455_37133703	5.22087	NKX3-1.p2	BC080863|Pcdha7|12939|protocadherin alpha 7	AY013765|Pcdha7|12939|protocadherin alpha 7	NM_009957|Pcdha7|12939|protocadherin alpha 7	AB008179|Pcdha7|12939|protocadherin alpha 7	EU854476|Pcdha7|12939|protocadherin alpha 7
mm9_v1_chr15_-_54751515_54751700	5.21316	NKX3-1.p2	EU131009|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	EU131010|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	NM_001136077|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	BC003264|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	AF123542|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	AK088491|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	AK161144|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	AK163881|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	BC058759|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	AK038940|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2	NM_015744|Enpp2|18606|ectonucleotide pyrophosphatase/phosphodiesterase 2
mm9_v1_chr13_+_14722494_14722518	5.15466	NKX3-1.p2	AK169400|AW209491|105351|expressed sequence AW209491	NM_001104646|AW209491|105351|expressed sequence AW209491
mm9_v1_chr12_-_42212538_42212554	5.10514	NKX3-1.p2	AK036316|Lrrn3|16981|leucine rich repeat protein 3, neuronal	D49802|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr13_+_14722530_14722557	5.07459	NKX3-1.p2	AK030506|AW209491|105351|expressed sequence AW209491	AK050507|AW209491|105351|expressed sequence AW209491	AK077649|AW209491|105351|expressed sequence AW209491
mm9_v1_chr19_-_21467250_21467261	4.99679	NKX3-1.p2	AK080065|Gda|14544|guanine deaminase
mm9_v1_chr6_-_128493413_128493444	4.81397	NKX3-1.p2	BC048546|BC048546|232400|cDNA sequence BC048546
mm9_v1_chr11_-_72016872_72016872	4.70578	NKX3-1.p2	BC043106|4933427D14Rik|74477|RIKEN cDNA 4933427D14 gene	NM_028963|4933427D14Rik|74477|RIKEN cDNA 4933427D14 gene
mm9_v1_chr2_-_24618566_24618692	4.68407	NKX3-1.p2	AF042317|Cacna1b|12287|calcium channel, voltage-dependent, N type, alpha 1B subunit	NM_001042528|Cacna1b|12287|calcium channel, voltage-dependent, N type, alpha 1B subunit	NM_007579|Cacna1b|12287|calcium channel, voltage-dependent, N type, alpha 1B subunit	U04999|Cacna1b|12287|calcium channel, voltage-dependent, N type, alpha 1B subunit
mm9_v1_chr7_-_86531587_86531645	4.64141	NKX3-1.p2	BC016268|Rlbp1|19771|retinaldehyde binding protein 1	AK014227|Rlbp1|19771|retinaldehyde binding protein 1
mm9_v1_chr18_-_23197156_23197163	4.5612	NKX3-1.p2	BC056377|Nol4|319211|nucleolar protein 4	NM_001161483|Nol4|319211|nucleolar protein 4
mm9_v1_chr8_-_113917651_113917728	4.4997	NKX3-1.p2	AY660882|Fa2h|338521|fatty acid 2-hydroxylase	BC046985|Fa2h|338521|fatty acid 2-hydroxylase	BC111912|Fa2h|338521|fatty acid 2-hydroxylase	BC128080|Fa2h|338521|fatty acid 2-hydroxylase	BC128081|Fa2h|338521|fatty acid 2-hydroxylase	AK090338|Fa2h|338521|fatty acid 2-hydroxylase	AK033736|Fa2h|338521|fatty acid 2-hydroxylase	AK161502|Fa2h|338521|fatty acid 2-hydroxylase	NM_178086|Fa2h|338521|fatty acid 2-hydroxylase
mm9_v1_chr17_+_74898763_74898780	4.49143	NKX3-1.p2	AK086213|Yipf4|67864|Yip1 domain family, member 4
mm9_v1_chr3_-_14778441_14778459	4.49051	NKX3-1.p2	BC110681|Car1|12346|carbonic anhydrase 1	BC011223|Car1|12346|carbonic anhydrase 1	AK033719|Car1|12346|carbonic anhydrase 1	AK162331|Car1|12346|carbonic anhydrase 1	NM_001083957|Car1|12346|carbonic anhydrase 1
mm9_v1_chr10_-_80693488_80693567	4.48707	NKX3-1.p2	AY349150|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	BC048903|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK038990|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	NM_178662|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK039411|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK028298|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK038483|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK162959|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK086723|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)
mm9_v1_chr2_+_97306600_97306623	4.45418	NKX3-1.p2	
mm9_v1_chr3_+_136566015_136566156	4.40218	NKX3-1.p2	AK076570|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr18_+_38476622_38476661	4.38549	NKX3-1.p2	
mm9_v1_chr14_+_80400057_80400108	4.36364	NKX3-1.p2	BC141127|Olfm4|380924|olfactomedin 4	BC145436|Olfm4|380924|olfactomedin 4	AK133536|Olfm4|380924|olfactomedin 4	NM_001030294|Olfm4|380924|olfactomedin 4
mm9_v1_chr2_+_128604653_128604725	4.35045	NKX3-1.p2	AK029009|Mertk|17289|c-mer proto-oncogene tyrosine kinase
mm9_v1_chr3_-_32884000_32884000	4.3102	NKX3-1.p2	AK006035|Pex5l|58869|peroxisomal biogenesis factor 5-like	NM_001163517|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr6_+_143156520_143156614	4.28271	NKX3-1.p2	AK004338|Etnk1|75320|ethanolamine kinase 1
mm9_v1_chr1_+_66368571_66368671	4.20454	NKX3-1.p2	AK046341|Mtap2|17756|microtubule-associated protein 2	AK086484|Mtap2|17756|microtubule-associated protein 2	M21041|Mtap2|17756|microtubule-associated protein 2	AK141458|Mtap2|17756|microtubule-associated protein 2
mm9_v1_chr13_+_14722520_14722529	4.15475	NKX3-1.p2	AK167401|AW209491|105351|expressed sequence AW209491	NM_134067|AW209491|105351|expressed sequence AW209491
mm9_v1_chr9_+_104472090_104472120	4.04559	NKX3-1.p2	AK043692|Cpne4|74020|copine IV	AK014396|Cpne4|74020|copine IV	BC043087|Cpne4|74020|copine IV	BC063081|Cpne4|74020|copine IV	NM_028719|Cpne4|74020|copine IV
mm9_v1_chr1_-_42724504_42724516	4.03779	NKX3-1.p2	BC049671|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr3_-_83967952_83967954	4.01674	NKX3-1.p2	AK054540|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr7_+_107789414_107789679	3.98262	NKX3-1.p2	AK191812|Rab6|19346|RAB6, member RAS oncogene family
mm9_v1_chr10_-_4707228_4707322	3.94676	NKX3-1.p2	BC089511|Vip|22353|vasoactive intestinal polypeptide	AK018599|Vip|22353|vasoactive intestinal polypeptide	NM_011702|Vip|22353|vasoactive intestinal polypeptide
mm9_v1_chr9_+_111277323_111277357	3.94132	NKX3-1.p2	BC086653|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1
mm9_v1_chr18_+_69843588_69843609	3.93021	NKX3-1.p2	AK017365|Tcf4|21413|transcription factor 4
mm9_v1_chr17_+_70774131_70774133	3.9134	NKX3-1.p2	NM_027712|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	NM_177639|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	BC062120|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr12_-_73509668_73509745	3.89657	NKX3-1.p2	BC053926|Rtn1|104001|reticulon 1	BC058579|Rtn1|104001|reticulon 1
mm9_v1_chr2_+_121121189_121121220	3.8705	NKX3-1.p2	NM_001173506|Mtap1a|17754|microtubule-associated protein 1 A	AF182212|Mtap1a|17754|microtubule-associated protein 1 A	BC028853|Mtap1a|17754|microtubule-associated protein 1 A	AK160546|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chrY_-_133778_133851	3.85969	NKX3-1.p2	X14382|Zfy1|22767|zinc finger protein 1, Y linked	AK076618|Zfy1|22767|zinc finger protein 1, Y linked	NM_009570|Zfy1|22767|zinc finger protein 1, Y linked
mm9_v1_chrX_+_139997806_139997811	3.85945	NKX3-1.p2	NM_008778|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	BC053403|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr11_-_51799215_51799347	3.85396	NKX3-1.p2	AK190260|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)
mm9_v1_chr3_-_113280650_113280667	3.84949	NKX3-1.p2	BC009121|Amy1|11722|amylase 1, salivary	V00717|Amy1|11722|amylase 1, salivary	NM_001110505|Amy1|11722|amylase 1, salivary	V00720|Amy1|11722|amylase 1, salivary
mm9_v1_chr2_+_20431673_20431673	3.82777	NKX3-1.p2	AB125594|Etl4|208618|enhancer trap locus 4	AB125595|Etl4|208618|enhancer trap locus 4	NM_029895|Etl4|208618|enhancer trap locus 4	NM_178059|Etl4|208618|enhancer trap locus 4
mm9_v1_chr11_+_79498993_79499001	3.82194	NKX3-1.p2	AK122559|Rab11fip4|268451|RAB11 family interacting protein 4 (class II)
mm9_v1_chr11_-_36757743_36757744	3.74884	NKX3-1.p2	BC141361|Odz2|23964|odd Oz/ten-m homolog 2 (Drosophila)	NM_011856|Odz2|23964|odd Oz/ten-m homolog 2 (Drosophila)
mm9_v1_chr3_+_51299646_51299685	3.70879	NKX3-1.p2	
mm9_v1_chr9_-_73781373_73781373	3.70096	NKX3-1.p2	NM_001081153|Unc13c|208898|unc-13 homolog C (C. elegans)
mm9_v1_chr3_-_146432922_146432972	3.70046	NKX3-1.p2	AK139419|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr13_+_42776161_42776182	3.68346	NKX3-1.p2	AK047654|Phactr1|218194|phosphatase and actin regulator 1	AY993932|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr9_+_32031833_32031859	3.65209	NKX3-1.p2	NM_177379|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr3_+_75878452_75878519	3.64401	NKX3-1.p2	AK140611|Fstl5|213262|follistatin-like 5	AK033652|Fstl5|213262|follistatin-like 5	AK081152|Fstl5|213262|follistatin-like 5	AF374460|Fstl5|213262|follistatin-like 5	BC075640|Fstl5|213262|follistatin-like 5	NM_178673|Fstl5|213262|follistatin-like 5
mm9_v1_chr7_-_149069070_149069207	3.60595	NKX3-1.p2	AK049198|Tollip|54473|toll interacting protein
mm9_v1_chr8_-_74150754_74150876	3.59736	NKX3-1.p2	AK141620|Unc13a|382018|unc-13 homolog A (C. elegans)	AK048697|Unc13a|382018|unc-13 homolog A (C. elegans)	AK039579|Unc13a|382018|unc-13 homolog A (C. elegans)
mm9_v1_chr4_-_61179982_61180020	3.47421	NKX3-1.p2	X04115|Mup1|17840|major urinary protein 1
mm9_v1_chr6_-_87338847_87338928	3.44056	NKX3-1.p2	AK004474|Gkn3|68888|gastrokine 3	FN600638|Gkn3|68888|gastrokine 3	GU220566|Gkn3|68888|gastrokine 3	BC116955|Gkn3|68888|gastrokine 3	NM_026860|Gkn3|68888|gastrokine 3
mm9_v1_chrX_+_80194208_80194241	3.43225	NKX3-1.p2	AK052856|Dmd|13405|dystrophin, muscular dystrophy	NM_007868|Dmd|13405|dystrophin, muscular dystrophy	M68859|Dmd|13405|dystrophin, muscular dystrophy
mm9_v1_chr10_+_105907394_105907408	3.38196	NKX3-1.p2	BC065133|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	EU568870|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	NM_177373|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK030621|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK220491|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm9_v1_chr3_+_95985065_95985205	3.34625	NKX3-1.p2	AK080525|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK144166|Sv2a|64051|synaptic vesicle glycoprotein 2 a	BC046587|Sv2a|64051|synaptic vesicle glycoprotein 2 a	NM_022030|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK080502|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK028318|Sv2a|64051|synaptic vesicle glycoprotein 2 a
mm9_v1_chr11_-_41814008_41814185	3.30829	NKX3-1.p2	M86572|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	BC031762|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	M62374|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	NM_008073|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK034338|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm9_v1_chr6_+_90424727_90424917	3.30094	NKX3-1.p2	AK185404|Klf15|66277|Kruppel-like factor 15	AK211444|Klf15|66277|Kruppel-like factor 15
mm9_v1_chr12_+_91570569_91570694	3.26858	NKX3-1.p2	AJ006804|Nrxn3|18191|neurexin III
mm9_v1_chr8_+_59934719_59934875	3.26378	NKX3-1.p2	AJ223206|Scrg1|20284|scrapie responsive gene 1	NM_009136|Scrg1|20284|scrapie responsive gene 1	BC058532|Scrg1|20284|scrapie responsive gene 1	AK046213|Scrg1|20284|scrapie responsive gene 1
mm9_v1_chrX_+_109608882_109608925	3.21033	NKX3-1.p2	AK017156|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene	NM_001168590|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene	NM_026333|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene	AK008319|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene	BC139480|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene	BC139481|2010106E10Rik|67715|RIKEN cDNA 2010106E10 gene
mm9_v1_chr14_+_14286471_14286627	3.17221	NKX3-1.p2	NM_001163032|Synpr|72003|synaptoporin	AK033999|Synpr|72003|synaptoporin	AK032442|Synpr|72003|synaptoporin	AK045705|Synpr|72003|synaptoporin	AK049661|Synpr|72003|synaptoporin
mm9_v1_chr4_-_60594469_60594490	3.15649	NKX3-1.p2	X04115|Mup1|17840|major urinary protein 1
mm9_v1_chr15_-_90764873_90764944	3.13081	NKX3-1.p2	AK052821|Kif21a|16564|kinesin family member 21A	AK047208|Kif21a|16564|kinesin family member 21A
mm9_v1_chr9_-_103129187_103129277	3.12951	NKX3-1.p2	BC008559|Trf|22041|transferrin	M23013|Trf|22041|transferrin
mm9_v1_chr5_+_107926763_107926815	3.09453	NKX3-1.p2	AK043587|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	NM_001007574|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK043720|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK164388|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK169666|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	NM_001168557|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene
mm9_v1_chr4_-_33010429_33010479	3.07756	NKX3-1.p2	BC065177|Ankrd6|140577|ankyrin repeat domain 6	NM_001012450|Ankrd6|140577|ankyrin repeat domain 6	NM_080471|Ankrd6|140577|ankyrin repeat domain 6
mm9_v1_chr16_-_85030543_85030555	2.95792	NKX3-1.p2	AK076506|App|11820|amyloid beta (A4) precursor protein	AK200287|App|11820|amyloid beta (A4) precursor protein	AK203089|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chrX_-_100381973_100382006	2.89244	NKX3-1.p2	X92352|Nap1l2|17954|nucleosome assembly protein 1-like 2	NM_008671|Nap1l2|17954|nucleosome assembly protein 1-like 2
mm9_v1_chr19_+_53214934_53215104	2.83617	NKX3-1.p2	NM_001164099|Add3|27360|adducin 3 (gamma)	NM_001164101|Add3|27360|adducin 3 (gamma)	AK019491|Add3|27360|adducin 3 (gamma)	AK028481|Add3|27360|adducin 3 (gamma)	AK083939|Add3|27360|adducin 3 (gamma)	BC029196|Add3|27360|adducin 3 (gamma)	AK035151|Add3|27360|adducin 3 (gamma)
mm9_v1_chr6_-_90612275_90612375	2.83427	NKX3-1.p2	AK044711|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr18_+_37127284_37127409	2.79994	NKX3-1.p2	D86917|Pcdha6|12937|protocadherin alpha 6	BC150815|Pcdha6|12937|protocadherin alpha 6	BC150816|Pcdha6|12937|protocadherin alpha 6	BC054813|Pcdha6|12937|protocadherin alpha 6	AY013764|Pcdha6|12937|protocadherin alpha 6	NM_007767|Pcdha6|12937|protocadherin alpha 6
mm9_v1_chr10_+_60552061_60552145	2.77349	NKX3-1.p2	NM_025273|Pcbd1|13180|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	AK007401|Pcbd1|13180|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	BC024354|Pcbd1|13180|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1
mm9_v1_chr5_-_63157309_63157425	2.75712	NKX3-1.p2	AK037027|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK039153|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK041540|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	NM_178407|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm9_v1_chr1_+_155756310_155756313	2.73589	NKX3-1.p2	AK146463|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK158643|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK159888|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK152497|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)
mm9_v1_chr7_-_110976438_110976438	2.73305	NKX3-1.p2	M10524|Hbb-b1|15129|hemoglobin, beta adult major chain
mm9_v1_chr11_-_50745128_50745136	2.7269	NKX3-1.p2	AK148756|Zfp354b|27274|zinc finger protein 354B	NM_013744|Zfp354b|27274|zinc finger protein 354B
mm9_v1_chr16_+_17045125_17045167	2.72637	NKX3-1.p2	AK163692|Mapk1|26413|mitogen-activated protein kinase 1
mm9_v1_chr5_-_31597792_31598351	2.70623	NKX3-1.p2	BC139278|Fndc4|64339|fibronectin type III domain containing 4	BC139292|Fndc4|64339|fibronectin type III domain containing 4	AK018154|Fndc4|64339|fibronectin type III domain containing 4	AK013203|Fndc4|64339|fibronectin type III domain containing 4	AK163183|Fndc4|64339|fibronectin type III domain containing 4	NM_022424|Fndc4|64339|fibronectin type III domain containing 4
mm9_v1_chr9_+_107948285_107948372	2.69977	NKX3-1.p2	AK208685|Ip6k1|27399|inositol hexaphosphate kinase 1	AK211834|Ip6k1|27399|inositol hexaphosphate kinase 1	AK191619|Ip6k1|27399|inositol hexaphosphate kinase 1	AK215657|Ip6k1|27399|inositol hexaphosphate kinase 1
mm9_v1_chr18_+_43923976_43923988	2.69278	NKX3-1.p2	AK136373|Scgb3a2|117158|secretoglobin, family 3A, member 2	AK136396|Scgb3a2|117158|secretoglobin, family 3A, member 2	AF274959|Scgb3a2|117158|secretoglobin, family 3A, member 2	AF274960|Scgb3a2|117158|secretoglobin, family 3A, member 2	AF274961|Scgb3a2|117158|secretoglobin, family 3A, member 2	BC061046|Scgb3a2|117158|secretoglobin, family 3A, member 2	NM_054038|Scgb3a2|117158|secretoglobin, family 3A, member 2	AF439546|Scgb3a2|117158|secretoglobin, family 3A, member 2
mm9_v1_chr4_-_41464365_41464365	2.66521	NKX3-1.p2	AB231294|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene	NM_001048005|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene
mm9_v1_chr4_+_45310018_45310039	2.66384	NKX3-1.p2	AK011746|Rg9mtd3|69934|RNA (guanine-9-) methyltransferase domain containing 3	AK030465|Rg9mtd3|69934|RNA (guanine-9-) methyltransferase domain containing 3	NM_027266|Rg9mtd3|69934|RNA (guanine-9-) methyltransferase domain containing 3
mm9_v1_chr10_+_34018323_34018472	2.65837	NKX3-1.p2	AK028517|Tspyl4|72480|TSPY-like 4
mm9_v1_chr15_-_57309179_57309179	2.64844	NKX3-1.p2	AK030222|BC026439|210463|cDNA sequence BC026439	NM_172378|BC026439|210463|cDNA sequence BC026439
mm9_v1_chr7_-_16457733_16457733	2.63864	NKX3-1.p2	AK139691|Crx|12951|cone-rod homeobox containing gene	NM_001113330|Crx|12951|cone-rod homeobox containing gene
mm9_v1_chr8_+_115093942_115094124	2.62804	NKX3-1.p2	BC034628|Cntnap4|170571|contactin associated protein-like 4	NM_130457|Cntnap4|170571|contactin associated protein-like 4	AK142816|Cntnap4|170571|contactin associated protein-like 4	AK081891|Cntnap4|170571|contactin associated protein-like 4	AK053611|Cntnap4|170571|contactin associated protein-like 4	AK042607|Cntnap4|170571|contactin associated protein-like 4	AK173255|Cntnap4|170571|contactin associated protein-like 4	AF333770|Cntnap4|170571|contactin associated protein-like 4
mm9_v1_chr9_-_40792541_40792554	2.627	NKX3-1.p2	AK163744|Crtam|54698|cytotoxic and regulatory T cell molecule
mm9_v1_chr12_-_60305853_60305917	2.61255	NKX3-1.p2	BC006669|Fbxo33|70611|F-box protein 33
mm9_v1_chr2_+_14310024_14310041	2.60118	NKX3-1.p2	NM_001012305|Slc39a12|277468|solute carrier family 39 (zinc transporter), member 12	AK134622|Slc39a12|277468|solute carrier family 39 (zinc transporter), member 12	BC089362|Slc39a12|277468|solute carrier family 39 (zinc transporter), member 12	BC113764|Slc39a12|277468|solute carrier family 39 (zinc transporter), member 12	BC113765|Slc39a12|277468|solute carrier family 39 (zinc transporter), member 12
mm9_v1_chr15_+_92427539_92427556	2.58564	NKX3-1.p2	NM_001164594|Pdzrn4|239618|PDZ domain containing RING finger 4	AK135524|Pdzrn4|239618|PDZ domain containing RING finger 4
mm9_v1_chr7_+_51480806_51480839	2.56254	NKX3-1.p2	AK002278|Klk1|16612|kallikrein 1	NM_010639|Klk1|16612|kallikrein 1	D10464|Klk1|16612|kallikrein 1	BC053697|Klk1|16612|kallikrein 1	BC010754|Klk1|16612|kallikrein 1	BC027736|Klk1|16612|kallikrein 1
mm9_v1_chr17_-_23908488_23908570	2.55386	NKX3-1.p2	AK168389|Flywch1|224613|FLYWCH-type zinc finger 1	NM_153791|Flywch1|224613|FLYWCH-type zinc finger 1
mm9_v1_chrX_-_73088288_73088302	2.51816	NKX3-1.p2	AK146087|Pls3|102866|plastin 3 (T-isoform)	NM_001166454|Pls3|102866|plastin 3 (T-isoform)
mm9_v1_chr18_+_34480612_34480673	2.50711	NKX3-1.p2	AK137301|Apc|11789|adenomatosis polyposis coli
mm9_v1_chr1_+_5073161_5073324	2.45942	NKX3-1.p2	AK151659|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK034165|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK135137|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK152147|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK081492|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	BC009154|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK078767|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	NM_133826|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H
mm9_v1_chr3_-_113126814_113126969	2.44738	NKX3-1.p2	BC100579|Amy2a5|109959|amylase 2a5	BC094924|Amy2a5|109959|amylase 2a5	AK078968|Amy2a5|109959|amylase 2a5	X02576|Amy2a5|109959|amylase 2a5	V00718|Amy2a5|109959|amylase 2a5	X02577|Amy2a5|109959|amylase 2a5	X02578|Amy2a5|109959|amylase 2a5	X02579|Amy2a5|109959|amylase 2a5	AK133526|Amy2a5|109959|amylase 2a5	NM_001042711|Amy2a5|109959|amylase 2a5	NM_001160150|Amy2a4|100043684|amylase 2a4	NM_001160151|Amy2a3|100043686|amylase 2a3	NM_001160152|Amy2a2|100043688|amylase 2a2
mm9_v1_chr18_+_69753035_69753127	2.44592	NKX3-1.p2	AK014343|Tcf4|21413|transcription factor 4	U16321|Tcf4|21413|transcription factor 4	AK132140|Tcf4|21413|transcription factor 4	BC014293|Tcf4|21413|transcription factor 4
mm9_v1_chr3_-_27795287_27795289	2.42392	NKX3-1.p2	AK053134|Tmem212|208613|transmembrane protein 212	BC119391|Tmem212|208613|transmembrane protein 212	BC119393|Tmem212|208613|transmembrane protein 212	NM_001164437|Tmem212|208613|transmembrane protein 212
mm9_v1_chr13_+_27149438_27149473	2.41729	NKX3-1.p2	NM_001163530|Prl|19109|prolactin	NM_011164|Prl|19109|prolactin	AK017547|Prl|19109|prolactin	AK161619|Prl|19109|prolactin	AK077493|Prl|19109|prolactin	AK017520|Prl|19109|prolactin	X04418|Prl|19109|prolactin	AK017521|Prl|19109|prolactin	AK017579|Prl|19109|prolactin	AK017584|Prl|19109|prolactin	AK133645|Prl|19109|prolactin	AK133736|Prl|19109|prolactin	AK133752|Prl|19109|prolactin	AK161553|Prl|19109|prolactin	AK161557|Prl|19109|prolactin	AK161565|Prl|19109|prolactin	AK161594|Prl|19109|prolactin	BC061141|Prl|19109|prolactin	X02892|Prl|19109|prolactin	AK017562|Prl|19109|prolactin
mm9_v1_chr8_-_47292863_47292905	2.40557	NKX3-1.p2	
mm9_v1_chr10_+_40657980_40658124	2.40429	NKX3-1.p2	AK080786|Wasf1|83767|WASP family 1
mm9_v1_chr6_+_41304103_41304177	2.39605	NKX3-1.p2	BC138698|Try10|436522|trypsin 10	BC146017|Try10|436522|trypsin 10	NM_001038996|Try10|436522|trypsin 10	AK133516|Try10|436522|trypsin 10
mm9_v1_chr2_-_66278870_66278908	2.3881	NKX3-1.p2	AK046001|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	AK134744|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	NM_018733|Scn1a|20265|sodium channel, voltage-gated, type I, alpha
mm9_v1_chr1_-_89283173_89283296	2.36626	NKX3-1.p2	
mm9_v1_chr12_+_75398460_75398460	2.35955	NKX3-1.p2	NM_198866|Dbpht2|386753|DNA binding protein with his-thr domain
mm9_v1_chr17_+_17539635_17539669	2.35149	NKX3-1.p2	BC049574|Lix1|66643|limb expression 1 homolog (chicken)	NM_025681|Lix1|66643|limb expression 1 homolog (chicken)
mm9_v1_chr6_-_148937854_148937926	2.34604	NKX3-1.p2	AK143126|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr3_-_113159420_113159575	2.34453	NKX3-1.p2	BC100579|Amy2a5|109959|amylase 2a5	BC094924|Amy2a5|109959|amylase 2a5	AK078968|Amy2a5|109959|amylase 2a5	X02576|Amy2a5|109959|amylase 2a5	V00718|Amy2a5|109959|amylase 2a5	X02577|Amy2a5|109959|amylase 2a5	X02578|Amy2a5|109959|amylase 2a5	X02579|Amy2a5|109959|amylase 2a5	AK133526|Amy2a5|109959|amylase 2a5	NM_001042711|Amy2a5|109959|amylase 2a5	NM_001160150|Amy2a4|100043684|amylase 2a4	NM_001160151|Amy2a3|100043686|amylase 2a3	NM_001160152|Amy2a2|100043688|amylase 2a2
mm9_v1_chr3_+_95330700_95330810	2.32199	NKX3-1.p2	AK028366|Ctss|13040|cathepsin S	NM_021281|Ctss|13040|cathepsin S	AJ002386|Ctss|13040|cathepsin S	AK152191|Ctss|13040|cathepsin S	AF038546|Ctss|13040|cathepsin S	AK150274|Ctss|13040|cathepsin S	BC011104|Ctss|13040|cathepsin S	BC002125|Ctss|13040|cathepsin S
mm9_v1_chr3_+_136333251_136333262	2.30413	NKX3-1.p2	AK166287|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr3_-_113094211_113094366	2.29552	NKX3-1.p2	BC100579|Amy2a5|109959|amylase 2a5	BC094924|Amy2a5|109959|amylase 2a5	AK078968|Amy2a5|109959|amylase 2a5	X02576|Amy2a5|109959|amylase 2a5	V00718|Amy2a5|109959|amylase 2a5	X02577|Amy2a5|109959|amylase 2a5	X02578|Amy2a5|109959|amylase 2a5	X02579|Amy2a5|109959|amylase 2a5	AK133526|Amy2a5|109959|amylase 2a5	NM_001042711|Amy2a5|109959|amylase 2a5	NM_001160150|Amy2a4|100043684|amylase 2a4	NM_001160151|Amy2a3|100043686|amylase 2a3	NM_001160152|Amy2a2|100043688|amylase 2a2
mm9_v1_chr11_-_90252228_90252237	2.28525	NKX3-1.p2	NM_172563|Hlf|217082|hepatic leukemia factor
mm9_v1_chr17_-_25922419_25922537	2.274	NKX3-1.p2	BC083322|Haghl|68977|hydroxyacylglutathione hydrolase-like	BC005586|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK047517|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK034798|Haghl|68977|hydroxyacylglutathione hydrolase-like	BC030466|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK032999|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK080454|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK154248|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK012748|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK021220|Haghl|68977|hydroxyacylglutathione hydrolase-like
mm9_v1_chr15_-_8660729_8660806	2.26936	NKX3-1.p2	BC058711|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	NM_148938|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm9_v1_chr12_-_4344470_4344503	2.24518	NKX3-1.p2	U64606|Ncoa1|17977|nuclear receptor coactivator 1	BC068177|Ncoa1|17977|nuclear receptor coactivator 1
mm9_v1_chr11_-_62206116_62206160	2.24301	NKX3-1.p2	AK137695|Ncor1|20185|nuclear receptor co-repressor 1
mm9_v1_chr17_-_43639675_43639721	2.24238	NKX3-1.p2	AK143906|Mep1a|17287|meprin 1 alpha	AK164734|Mep1a|17287|meprin 1 alpha	AK093914|Mep1a|17287|meprin 1 alpha	M74897|Mep1a|17287|meprin 1 alpha	BC015258|Mep1a|17287|meprin 1 alpha	NM_008585|Mep1a|17287|meprin 1 alpha
mm9_v1_chr9_-_112090150_112090479	2.20443	NKX3-1.p2	BC128376|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AF324451|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_033264|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK159004|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK002950|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	BC027107|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK160860|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177615|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177620|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_028755|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chr15_-_95359136_95359208	2.17667	NKX3-1.p2	NM_016743|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr5_-_104542751_104542758	2.17446	NKX3-1.p2	BC003759|Sparcl1|13602|SPARC-like 1
mm9_v1_chr4_-_109960078_109960115	2.17136	NKX3-1.p2	BC052451|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AF041342|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK079088|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001038698|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr9_+_66561492_66561635	2.16164	NKX3-1.p2	NM_178396|Car12|76459|carbonic anyhydrase 12	AK052639|Car12|76459|carbonic anyhydrase 12	AK157977|Car12|76459|carbonic anyhydrase 12	AK037694|Car12|76459|carbonic anyhydrase 12	AK166132|Car12|76459|carbonic anyhydrase 12	BC031385|Car12|76459|carbonic anyhydrase 12	BC035941|Car12|76459|carbonic anyhydrase 12	AK170859|Car12|76459|carbonic anyhydrase 12	BC033432|Car12|76459|carbonic anyhydrase 12
mm9_v1_chr10_+_87553816_87553819	2.14861	NKX3-1.p2	AK138363|Pmch|110312|pro-melanin-concentrating hormone	BC048534|Pmch|110312|pro-melanin-concentrating hormone	NM_029971|Pmch|110312|pro-melanin-concentrating hormone	AK020723|Pmch|110312|pro-melanin-concentrating hormone
mm9_v1_chr7_-_116651647_116651647	2.14525	NKX3-1.p2	AY572454|Trim66|330627|tripartite motif-containing 66	AY572455|Trim66|330627|tripartite motif-containing 66	NM_001170912|Trim66|330627|tripartite motif-containing 66	NM_181853|Trim66|330627|tripartite motif-containing 66
mm9_v1_chr19_-_41151561_41151602	2.13647	NKX3-1.p2	BC060980|Opalin|226115|oligodendrocytic myelin paranodal and inner loop protein	AK140031|Opalin|226115|oligodendrocytic myelin paranodal and inner loop protein	NM_153520|Opalin|226115|oligodendrocytic myelin paranodal and inner loop protein
mm9_v1_chr3_-_10197187_10197261	2.09968	NKX3-1.p2	AK161314|Fabp9|21884|fatty acid binding protein 9, testis	AK005745|Fabp9|21884|fatty acid binding protein 9, testis	BC048437|Fabp9|21884|fatty acid binding protein 9, testis	NM_011598|Fabp9|21884|fatty acid binding protein 9, testis
mm9_v1_chr4_-_138419379_138419383	2.09244	NKX3-1.p2	AK090021|Pla2g5|18784|phospholipase A2, group V	NM_001122954|Pla2g5|18784|phospholipase A2, group V
mm9_v1_chr18_+_69753146_69753168	2.08748	NKX3-1.p2	AK151433|Tcf4|21413|transcription factor 4
mm9_v1_chr7_-_110976499_110976501	2.07654	NKX3-1.p2	S71555|Hbb-b1|15129|hemoglobin, beta adult major chain	S71558|Hbb-b1|15129|hemoglobin, beta adult major chain	S71559|Hbb-b1|15129|hemoglobin, beta adult major chain
mm9_v1_chr5_-_44485951_44486006	2.0661	NKX3-1.p2	AF305215|Prom1|19126|prominin 1	AY099088|Prom1|19126|prominin 1	AY223521|Prom1|19126|prominin 1	AY223522|Prom1|19126|prominin 1	NM_001163578|Prom1|19126|prominin 1	NM_001163581|Prom1|19126|prominin 1	NM_001163582|Prom1|19126|prominin 1	NM_001163583|Prom1|19126|prominin 1	NM_001163584|Prom1|19126|prominin 1	NM_001163585|Prom1|19126|prominin 1
mm9_v1_chr5_-_88128419_88128445	2.06357	NKX3-1.p2	BC019114|Csn2|12991|casein beta	BC013332|Csn2|12991|casein beta	BC092098|Csn2|12991|casein beta	BC020356|Csn2|12991|casein beta	BC050270|Csn2|12991|casein beta	BC020383|Csn2|12991|casein beta	BC021153|Csn2|12991|casein beta	BC057671|Csn2|12991|casein beta	BC080709|Csn2|12991|casein beta	AK164792|Csn2|12991|casein beta	AK164793|Csn2|12991|casein beta	AK085729|Csn2|12991|casein beta	AK021324|Csn2|12991|casein beta	AK021328|Csn2|12991|casein beta	AK052803|Csn2|12991|casein beta	AK052805|Csn2|12991|casein beta	AK052822|Csn2|12991|casein beta	AK085678|Csn2|12991|casein beta	AK085694|Csn2|12991|casein beta	AK085698|Csn2|12991|casein beta	AK085756|Csn2|12991|casein beta	AK142616|Csn2|12991|casein beta	AK142620|Csn2|12991|casein beta	AK142631|Csn2|12991|casein beta	AK142635|Csn2|12991|casein beta	AK164747|Csn2|12991|casein beta	AK164761|Csn2|12991|casein beta	AK164791|Csn2|12991|casein beta	AK164794|Csn2|12991|casein beta	NM_009972|Csn2|12991|casein beta	X04490|Csn2|12991|casein beta
mm9_v1_chr3_-_115956312_115956401	2.05034	NKX3-1.p2	BC029939|Gpr88|64378|G-protein coupled receptor 88	AB042408|Gpr88|64378|G-protein coupled receptor 88	NM_022427|Gpr88|64378|G-protein coupled receptor 88
mm9_v1_chr18_+_38611212_38611226	2.04507	NKX3-1.p2	
mm9_v1_chr4_-_60594496_60594530	2.03018	NKX3-1.p2	M27609|Mup1|17840|major urinary protein 1	X03524|Mup1|17840|major urinary protein 1
mm9_v1_chr3_+_159262144_159262196	2.01107	NKX3-1.p2	NM_029987|Rpe65|19892|retinal pigment epithelium 65	AK020906|Rpe65|19892|retinal pigment epithelium 65	BC090656|Rpe65|19892|retinal pigment epithelium 65	BC130028|Rpe65|19892|retinal pigment epithelium 65	AF410461|Rpe65|19892|retinal pigment epithelium 65
mm9_v1_chr10_-_52058305_52058381	2.00314	NKX3-1.p2	AK008806|Gopc|94221|golgi associated PDZ and coiled-coil motif containing
mm9_v1_chr14_-_100548982_100549014	2.00062	NKX3-1.p2	AB221575|Klf12|16597|Kruppel-like factor 12	Y14295|Klf12|16597|Kruppel-like factor 12	BC067408|Klf12|16597|Kruppel-like factor 12	NM_010636|Klf12|16597|Kruppel-like factor 12
mm9_v1_chr4_-_134409044_134409108	1.99684	NKX3-1.p2	AY364165|Tmem57|66146|transmembrane protein 57	BC054355|Tmem57|66146|transmembrane protein 57	BC010714|Tmem57|66146|transmembrane protein 57
mm9_v1_chr5_+_34185760_34185844	1.99623	NKX3-1.p2	NM_001081102|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_001177884|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_175231|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	BC079668|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)
mm9_v1_chr18_+_37644390_37644448	1.98872	NKX3-1.p2	AK122533|Pcdhb17|93888|protocadherin beta 17
mm9_v1_chr3_-_65940346_65940359	1.98622	NKX3-1.p2	AB085189|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	AK013398|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	NM_028357|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)
mm9_v1_chr1_+_111880313_111880391	1.98347	NKX3-1.p2	AK034096|Cdh7|241201|cadherin 7, type 2	NM_172853|Cdh7|241201|cadherin 7, type 2	AK137369|Cdh7|241201|cadherin 7, type 2
mm9_v1_chr18_+_80315134_80315153	1.97893	NKX3-1.p2	AK010699|Pard6g|93737|par-6 partitioning defective 6 homolog gamma (C. elegans)
mm9_v1_chr1_-_72583137_72583137	1.97349	NKX3-1.p2	BC098191|March4|381270|membrane-associated ring finger (C3HC4) 4	NM_001045533|March4|381270|membrane-associated ring finger (C3HC4) 4
mm9_v1_chr3_-_117063793_117063793	1.96701	NKX3-1.p2	AF541279|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AK046782|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AY266266|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AY266267|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	NM_177664|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm9_v1_chr8_-_113426341_113426387	1.95614	NKX3-1.p2	AK140503|Fuk|234730|fucokinase	AK164340|Fuk|234730|fucokinase	AJ297482|Fuk|234730|fucokinase	AJ534942|Fuk|234730|fucokinase	AY223865|Fuk|234730|fucokinase	NM_172283|Fuk|234730|fucokinase	NM_181666|Fuk|234730|fucokinase	AK161763|Fuk|234730|fucokinase
mm9_v1_chr10_+_90038471_90038471	1.9487	NKX3-1.p2	BC098373|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177397|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr2_-_3339919_3339919	1.94394	NKX3-1.p2	BC049538|Meig1|104362|meiosis expressed gene 1	NM_008579|Meig1|104362|meiosis expressed gene 1
mm9_v1_chr3_+_88373199_88373199	1.93984	NKX3-1.p2	AK207994|Ubqln4|94232|ubiquilin 4
mm9_v1_chr1_-_52714729_52714742	1.93717	NKX3-1.p2	BC016598|Mfsd6|98682|major facilitator superfamily domain containing 6
mm9_v1_chr8_-_37631772_37631789	1.91954	NKX3-1.p2	BC048730|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr15_-_8660479_8660490	1.91591	NKX3-1.p2	AK045949|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AK080879|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm9_v1_chr3_+_87422672_87422672	1.9088	NKX3-1.p2	BC079565|Arhgef11|213498|Rho guanine nucleotide exchange factor (GEF) 11	NM_001003912|Arhgef11|213498|Rho guanine nucleotide exchange factor (GEF) 11
mm9_v1_chr1_-_37592976_37593103	1.90524	NKX3-1.p2	AB053217|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	AK163327|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	AK082702|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	NM_173870|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm9_v1_chr17_-_23736453_23736453	1.8901	NKX3-1.p2	AK030240|Zfp13|22654|zinc finger protein 13	NM_011747|Zfp13|22654|zinc finger protein 13
mm9_v1_chrX_-_75491259_75491259	1.88857	NKX3-1.p2	NM_001126321|Gm14743|236874|predicted gene 14743
mm9_v1_chr19_-_28057437_28057437	1.88715	NKX3-1.p2	NM_001166414|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr1_+_177562321_177562338	1.87638	NKX3-1.p2	BC014683|Kmo|98256|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	NM_133809|Kmo|98256|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
mm9_v1_chr12_+_53800369_53800393	1.87409	NKX3-1.p2	AK147248|Akap6|238161|A kinase (PRKA) anchor protein 6	AK147371|Akap6|238161|A kinase (PRKA) anchor protein 6	NM_198111|Akap6|238161|A kinase (PRKA) anchor protein 6
mm9_v1_chr7_+_4873852_4873852	1.86937	NKX3-1.p2	AK158627|Nat14|269854|N-acetyltransferase 14	NM_201355|Nat14|269854|N-acetyltransferase 14
mm9_v1_chr5_-_23122181_23122418	1.86419	NKX3-1.p2	AB006036|Srpk2|20817|serine/arginine-rich protein specific kinase 2	BC020178|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK136861|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK169580|Srpk2|20817|serine/arginine-rich protein specific kinase 2	NM_009274|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr18_+_69843730_69844096	1.86303	NKX3-1.p2	AK021032|Tcf4|21413|transcription factor 4	AK047926|Tcf4|21413|transcription factor 4	AK045400|Tcf4|21413|transcription factor 4	AK083152|Tcf4|21413|transcription factor 4	AK039181|Tcf4|21413|transcription factor 4	AK040346|Tcf4|21413|transcription factor 4	AK032345|Tcf4|21413|transcription factor 4
mm9_v1_chr11_+_78312621_78312770	1.85019	NKX3-1.p2	NM_011707|Vtn|22370|vitronectin	AK011736|Vtn|22370|vitronectin	AK090325|Vtn|22370|vitronectin	AK167494|Vtn|22370|vitronectin
mm9_v1_chr1_-_90406613_90406640	1.83875	NKX3-1.p2	BC139128|Glrp1|14659|glutamine repeat protein 1	BC139129|Glrp1|14659|glutamine repeat protein 1	NM_008132|Glrp1|14659|glutamine repeat protein 1	U46463|Glrp1|14659|glutamine repeat protein 1
mm9_v1_chr8_-_85982247_85982289	1.83792	NKX3-1.p2	AK002521|Scoc|56367|short coiled-coil protein	BC147069|Scoc|56367|short coiled-coil protein	NM_001039137|Scoc|56367|short coiled-coil protein
mm9_v1_chr1_-_74982118_74982188	1.82339	NKX3-1.p2	BC150939|Ccdc108|241116|coiled-coil domain containing 108	AK038623|Ccdc108|241116|coiled-coil domain containing 108	AK046272|Ccdc108|241116|coiled-coil domain containing 108	AK133278|Ccdc108|241116|coiled-coil domain containing 108	NM_001039495|Ccdc108|241116|coiled-coil domain containing 108
mm9_v1_chr11_-_69182891_69182931	1.81477	NKX3-1.p2	AK045449|Chd3|216848|chromodomain helicase DNA binding protein 3	NM_146019|Chd3|216848|chromodomain helicase DNA binding protein 3
mm9_v1_chr13_+_25035416_25035485	1.79493	NKX3-1.p2	AY081194|Gpld1|14756|glycosylphosphatidylinositol specific phospholipase D1	AK004957|Gpld1|14756|glycosylphosphatidylinositol specific phospholipase D1	BC019146|Gpld1|14756|glycosylphosphatidylinositol specific phospholipase D1	AY333960|Gpld1|14756|glycosylphosphatidylinositol specific phospholipase D1
mm9_v1_chr4_-_129301106_129301154	1.78974	NKX3-1.p2	AK003287|Ccdc28b|66264|coiled coil domain containing 28B	AK028262|Ccdc28b|66264|coiled coil domain containing 28B	BC028873|Ccdc28b|66264|coiled coil domain containing 28B	NM_025455|Ccdc28b|66264|coiled coil domain containing 28B	AK158016|Ccdc28b|66264|coiled coil domain containing 28B
mm9_v1_chr1_-_89291303_89291307	1.77642	NKX3-1.p2	NM_001110227|Kcnj13|100040591|potassium inwardly-rectifying channel, subfamily J, member 13
mm9_v1_chr9_-_55983967_55984081	1.77417	NKX3-1.p2	AK212733|Tspan3|56434|tetraspanin 3	AK206202|Tspan3|56434|tetraspanin 3	AK211000|Tspan3|56434|tetraspanin 3	AK216580|Tspan3|56434|tetraspanin 3	AK219763|Tspan3|56434|tetraspanin 3	AK219867|Tspan3|56434|tetraspanin 3	AK206891|Tspan3|56434|tetraspanin 3	AK219936|Tspan3|56434|tetraspanin 3
mm9_v1_chr2_-_65405546_65405588	1.77385	NKX3-1.p2	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr10_+_18189773_18189786	1.77222	NKX3-1.p2	BC030842|Nhsl1|215819|NHS-like 1	NM_001163592|Nhsl1|215819|NHS-like 1
mm9_v1_chr1_+_177562307_177562314	1.76249	NKX3-1.p2	AK129011|Kmo|98256|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
mm9_v1_chrX_-_34650263_34650340	1.73769	NKX3-1.p2	AK019989|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC058761|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK162222|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK011606|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK145431|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	NM_026573|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC117769|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC117770|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)
mm9_v1_chr15_+_12808445_12808493	1.73017	NKX3-1.p2	BC040801|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr12_+_104626888_104626975	1.72893	NKX3-1.p2	NM_026580|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK076336|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	NM_001177841|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	BC049551|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK016449|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK160505|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK019830|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006346|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006469|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006054|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	BC052409|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2
mm9_v1_chr10_-_109437274_109437274	1.72703	NKX3-1.p2	NM_001081035|Nav3|260315|neuron navigator 3
mm9_v1_chr3_+_51298674_51298675	1.70257	NKX3-1.p2	AK038231|Rab33b|19338|RAB33B, member of RAS oncogene family
mm9_v1_chr17_+_37006518_37006546	1.67964	NKX3-1.p2	NM_011280|Trim10|19824|tripartite motif-containing 10	AK011082|Trim10|19824|tripartite motif-containing 10	AF134811|Trim10|19824|tripartite motif-containing 10	BC051632|Trim10|19824|tripartite motif-containing 10	AF220121|Trim10|19824|tripartite motif-containing 10
mm9_v1_chrM_+_13543_13577	1.67286	NKX3-1.p2	
mm9_v1_chr11_+_76718046_76718079	1.65947	NKX3-1.p2	AK009118|Tmigd1|66601|transmembrane and immunoglobulin domain containing 1	NM_025655|Tmigd1|66601|transmembrane and immunoglobulin domain containing 1	BC061082|Tmigd1|66601|transmembrane and immunoglobulin domain containing 1	BC022683|Tmigd1|66601|transmembrane and immunoglobulin domain containing 1
mm9_v1_chr6_-_41264706_41264793	1.65785	NKX3-1.p2	AK007843|Try5|103964|trypsin 5	AK131898|Try5|103964|trypsin 5	AK160484|Try5|103964|trypsin 5	AB009661|Try5|103964|trypsin 5	NM_001003405|Try5|103964|trypsin 5	BC139220|Try5|103964|trypsin 5	BC139223|Try5|103964|trypsin 5
mm9_v1_chr12_+_4082573_4082658	1.65058	NKX3-1.p2	NM_153082|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	BC051140|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	AK049300|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	BC042643|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27
mm9_v1_chr16_-_58928469_58928469	1.64686	NKX3-1.p2	NM_146999|Olfr181|259001|olfactory receptor 181
mm9_v1_chr5_+_22988226_22988243	1.64541	NKX3-1.p2	
mm9_v1_chr18_+_37828606_37828758	1.64476	NKX3-1.p2	AB093250|Pcdhga2|93710|protocadherin gamma subfamily A, 2	BC139178|Pcdhga2|93710|protocadherin gamma subfamily A, 2	AY013796|Pcdhga2|93710|protocadherin gamma subfamily A, 2	NM_033585|Pcdhga2|93710|protocadherin gamma subfamily A, 2
mm9_v1_chr8_-_25836259_25836296	1.63825	NKX3-1.p2	BC049609|Adam3|11497|a disintegrin and metallopeptidase domain 3 (cyritestin)	BC060975|Adam3|11497|a disintegrin and metallopeptidase domain 3 (cyritestin)	BC129920|Adam3|11497|a disintegrin and metallopeptidase domain 3 (cyritestin)	NM_009619|Adam3|11497|a disintegrin and metallopeptidase domain 3 (cyritestin)	X64227|Adam3|11497|a disintegrin and metallopeptidase domain 3 (cyritestin)
mm9_v1_chrX_+_66015013_66015108	1.63766	NKX3-1.p2	BC099411|Fmr1nb|207854|fragile X mental retardation 1 neighbor	NM_001166619|Fmr1nb|207854|fragile X mental retardation 1 neighbor	NM_001166620|Fmr1nb|207854|fragile X mental retardation 1 neighbor	NM_174993|Fmr1nb|207854|fragile X mental retardation 1 neighbor	BC138087|Fmr1nb|207854|fragile X mental retardation 1 neighbor	BC145139|Fmr1nb|207854|fragile X mental retardation 1 neighbor	BC145140|Fmr1nb|207854|fragile X mental retardation 1 neighbor	BC171922|Fmr1nb|207854|fragile X mental retardation 1 neighbor	BC171923|Fmr1nb|207854|fragile X mental retardation 1 neighbor	BC171947|Fmr1nb|207854|fragile X mental retardation 1 neighbor	BC171948|Fmr1nb|207854|fragile X mental retardation 1 neighbor	AK076190|Fmr1nb|207854|fragile X mental retardation 1 neighbor	AY214130|Fmr1nb|207854|fragile X mental retardation 1 neighbor
mm9_v1_chr11_+_78139476_78139615	1.63014	NKX3-1.p2	AJ132391|Aldoc|11676|aldolase C, fructose-bisphosphate
mm9_v1_chr1_-_166368439_166368560	1.62969	NKX3-1.p2	EF437334|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr6_-_132160538_132160538	1.56797	NKX3-1.p2	BC011176|Prb1|381833|proline-rich protein BstNI subfamily 1	NM_198669|Prb1|381833|proline-rich protein BstNI subfamily 1
mm9_v1_chr14_-_21437545_21437583	1.5608	NKX3-1.p2	AK047620|Usp54|78787|ubiquitin specific peptidase 54	NM_030180|Usp54|78787|ubiquitin specific peptidase 54
mm9_v1_chr1_-_77511653_77511664	1.55923	NKX3-1.p2	AK028509|Epha4|13838|Eph receptor A4	AK147698|Epha4|13838|Eph receptor A4	AK132203|Epha4|13838|Eph receptor A4	NM_007936|Epha4|13838|Eph receptor A4	S57168|Epha4|13838|Eph receptor A4	X65138|Epha4|13838|Eph receptor A4
mm9_v1_chr3_-_113061599_113061616	1.55706	NKX3-1.p2	BC100579|Amy2a5|109959|amylase 2a5	BC094924|Amy2a5|109959|amylase 2a5	AK078968|Amy2a5|109959|amylase 2a5	X02576|Amy2a5|109959|amylase 2a5	V00718|Amy2a5|109959|amylase 2a5	X02577|Amy2a5|109959|amylase 2a5	X02578|Amy2a5|109959|amylase 2a5	X02579|Amy2a5|109959|amylase 2a5	AK133526|Amy2a5|109959|amylase 2a5	NM_001042711|Amy2a5|109959|amylase 2a5
mm9_v1_chr4_+_102262447_102262471	1.54131	NKX3-1.p2	AK051102|Pde4b|18578|phosphodiesterase 4B, cAMP specific	NM_001177981|Pde4b|18578|phosphodiesterase 4B, cAMP specific	BC071259|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr2_+_26203297_26203537	1.52462	NKX3-1.p2	AK007593|Gpsm1|67839|G-protein signalling modulator 1 (AGS3-like, C. elegans)	AK211070|Gpsm1|67839|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm9_v1_chr5_-_87997908_87998005	1.50903	NKX3-1.p2	AF026073|Sult1d1|53315|sulfotransferase family 1D, member 1	AK133530|Sult1d1|53315|sulfotransferase family 1D, member 1	U32371|Sult1d1|53315|sulfotransferase family 1D, member 1	BC066190|Sult1d1|53315|sulfotransferase family 1D, member 1	BC010752|Sult1d1|53315|sulfotransferase family 1D, member 1
mm9_v1_chr11_-_62190182_62190262	1.49641	NKX3-1.p2	AB093281|Ncor1|20185|nuclear receptor co-repressor 1
mm9_v1_chr12_+_83412335_83412335	1.48788	NKX3-1.p2	NM_172579|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1
mm9_v1_chr10_-_80962400_80962451	1.45874	NKX3-1.p2	AK075854|S1pr4|13611|sphingosine-1-phosphate receptor 4	AK154242|S1pr4|13611|sphingosine-1-phosphate receptor 4	BC107000|S1pr4|13611|sphingosine-1-phosphate receptor 4
mm9_v1_chr12_-_70576533_70576536	1.45613	NKX3-1.p2	AK039829|5830428M24Rik|76062|RIKEN cDNA 5830428M24 gene	AK017954|5830428M24Rik|76062|RIKEN cDNA 5830428M24 gene
mm9_v1_chr18_+_37874471_37874595	1.45474	NKX3-1.p2	AK034910|Pcdhga7|93715|protocadherin gamma subfamily A, 7	BC077712|Pcdhga7|93715|protocadherin gamma subfamily A, 7	NM_033590|Pcdhga7|93715|protocadherin gamma subfamily A, 7	AY013801|Pcdhga7|93715|protocadherin gamma subfamily A, 7
mm9_v1_chr2_-_77357674_77357722	1.44818	NKX3-1.p2	AK078551|Zfp385b|241494|zinc finger protein 385B	AK050293|Zfp385b|241494|zinc finger protein 385B	NM_001113400|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr6_+_78355148_78355151	1.44048	NKX3-1.p2	NM_009043|Reg2|19693|regenerating islet-derived 2	AK008196|Reg2|19693|regenerating islet-derived 2
mm9_v1_chr5_+_88203590_88203597	1.42922	NKX3-1.p2	AK164738|Csn1s2a|12993|casein alpha s2-like A	D10215|Csn1s2a|12993|casein alpha s2-like A	NM_007785|Csn1s2a|12993|casein alpha s2-like A	AK142688|Csn1s2a|12993|casein alpha s2-like A
mm9_v1_chr11_+_3230733_3230843	1.42037	NKX3-1.p2	NM_178149|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK028419|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK029304|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK154842|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK005141|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK160300|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AF528081|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	BC055920|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	BC079641|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AF528078|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	BC028479|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1
mm9_v1_chr17_-_87827021_87827080	1.41389	NKX3-1.p2	AK005861|1700011E24Rik|75467|RIKEN cDNA 1700011E24 gene	NM_029298|1700011E24Rik|75467|RIKEN cDNA 1700011E24 gene
mm9_v1_chr6_+_121596815_121596927	1.39572	NKX3-1.p2	BC023844|A2m|232345|alpha-2-macroglobulin
mm9_v1_chr19_+_39188387_39188399	1.38588	NKX3-1.p2	AY227734|Cyp2c66|69888|cytochrome P450, family 2, subfamily c, polypeptide 66	NM_001011707|Cyp2c66|69888|cytochrome P450, family 2, subfamily c, polypeptide 66	BC147819|Cyp2c66|69888|cytochrome P450, family 2, subfamily c, polypeptide 66	BC147824|Cyp2c66|69888|cytochrome P450, family 2, subfamily c, polypeptide 66	AK008512|Cyp2c66|69888|cytochrome P450, family 2, subfamily c, polypeptide 66
mm9_v1_chr10_+_57370786_57370799	1.37973	NKX3-1.p2	BC052351|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039050|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001190402|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	BC087894|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific
mm9_v1_chr4_-_134409149_134409155	1.37384	NKX3-1.p2	AK038972|Tmem57|66146|transmembrane protein 57	BC054769|Tmem57|66146|transmembrane protein 57
mm9_v1_chr18_+_37849488_37849707	1.37369	NKX3-1.p2	BC054557|Pcdhgb2|93700|protocadherin gamma subfamily B, 2	NM_033575|Pcdhgb2|93700|protocadherin gamma subfamily B, 2	AY013805|Pcdhgb2|93700|protocadherin gamma subfamily B, 2
mm9_v1_chr18_+_23656024_23656160	1.3507	NKX3-1.p2	AK147359|Dtna|13527|dystrobrevin alpha	BC050765|Dtna|13527|dystrobrevin alpha	AK131649|Dtna|13527|dystrobrevin alpha	X95226|Dtna|13527|dystrobrevin alpha
mm9_v1_chr17_-_31266539_31266557	1.34249	NKX3-1.p2	BC011042|Tff3|21786|trefoil factor 3, intestinal	AK008538|Tff3|21786|trefoil factor 3, intestinal	D38410|Tff3|21786|trefoil factor 3, intestinal	NM_011575|Tff3|21786|trefoil factor 3, intestinal
mm9_v1_chr14_+_13073221_13073222	1.32959	NKX3-1.p2	AK134814|Ptprg|19270|protein tyrosine phosphatase, receptor type, G
mm9_v1_chrX_-_108651553_108651553	1.32054	NKX3-1.p2	NM_025949|Rps6ka6|67071|ribosomal protein S6 kinase polypeptide 6
mm9_v1_chr10_+_28931448_28931510	1.30421	NKX3-1.p2	NM_001162537|9330159F19Rik|212448|RIKEN cDNA 9330159F19 gene	AK034141|9330159F19Rik|212448|RIKEN cDNA 9330159F19 gene	BC138279|9330159F19Rik|212448|RIKEN cDNA 9330159F19 gene	BC138282|9330159F19Rik|212448|RIKEN cDNA 9330159F19 gene
mm9_v1_chr5_+_143996849_143996932	1.30243	NKX3-1.p2	AK049650|Zfp12|231866|zinc finger protein 12	NM_177681|Zfp12|231866|zinc finger protein 12	BC059836|Zfp12|231866|zinc finger protein 12	BC053080|Zfp12|231866|zinc finger protein 12
mm9_v1_chr9_+_106091656_106091698	1.29802	NKX3-1.p2	BC054453|Wdr82|77305|WD repeat domain containing 82	BC112907|Wdr82|77305|WD repeat domain containing 82	BC044669|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr2_+_163899842_163899948	1.29501	NKX3-1.p2	BC054521|Stk4|58231|serine/threonine kinase 4	AF271360|Stk4|58231|serine/threonine kinase 4	AK028838|Stk4|58231|serine/threonine kinase 4	NM_021420|Stk4|58231|serine/threonine kinase 4
mm9_v1_chr11_-_94693315_94693315	1.29495	NKX3-1.p2	NM_001163172|Tmem92-ps|544806|transmembrane protein 92, pseudogene
mm9_v1_chr6_+_79969636_79969636	1.2931	NKX3-1.p2	NM_178731|Lrrtm4|243499|leucine rich repeat transmembrane neuronal 4
mm9_v1_chr7_+_53339469_53339531	1.2846	NKX3-1.p2	
mm9_v1_chr6_+_86028044_86028077	1.28027	NKX3-1.p2	AK156954|Add2|11519|adducin 2 (beta)	AK028425|Add2|11519|adducin 2 (beta)	AK014496|Add2|11519|adducin 2 (beta)	NM_013458|Add2|11519|adducin 2 (beta)
mm9_v1_chr1_-_82765022_82765035	1.27155	NKX3-1.p2	BC117736|Tm4sf20|66261|transmembrane 4 L six family member 20	AK007532|Tm4sf20|66261|transmembrane 4 L six family member 20	AK017154|Tm4sf20|66261|transmembrane 4 L six family member 20	AK017195|Tm4sf20|66261|transmembrane 4 L six family member 20	NM_025453|Tm4sf20|66261|transmembrane 4 L six family member 20	AK017209|Tm4sf20|66261|transmembrane 4 L six family member 20
mm9_v1_chr11_+_85413817_85413884	1.25806	NKX3-1.p2	AK078571|7030407E18Rik|399600|RIKEN cDNA 7030407E18 gene
mm9_v1_chr6_+_90288207_90288212	1.25301	NKX3-1.p2	BC033269|Uroc1|243537|urocanase domain containing 1
mm9_v1_chr16_+_17045284_17045304	1.25241	NKX3-1.p2	AK018549|Mapk1|26413|mitogen-activated protein kinase 1
mm9_v1_chr15_-_74942109_74942378	1.24883	NKX3-1.p2	M18466|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2	D86232|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2	BC092082|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2	NM_001099217|Ly6c2|100041546|lymphocyte antigen 6 complex, locus C2
mm9_v1_chr2_-_91019477_91019477	1.23802	NKX3-1.p2	NM_001177720|Madd|228355|MAP-kinase activating death domain
mm9_v1_chr5_-_138404150_138404333	1.2362	NKX3-1.p2	AK034037|Gjc3|118446|gap junction protein, gamma 3	BC125305|Gjc3|118446|gap junction protein, gamma 3	AK047368|Gjc3|118446|gap junction protein, gamma 3	NM_080450|Gjc3|118446|gap junction protein, gamma 3	AK045577|Gjc3|118446|gap junction protein, gamma 3	AK147913|Gjc3|118446|gap junction protein, gamma 3
mm9_v1_chr14_-_60845511_60845640	1.23048	NKX3-1.p2	AK145818|BC010981|407830|cDNA sequence BC010981
mm9_v1_chr14_-_103379725_103379759	1.22472	NKX3-1.p2	AK086988|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK032276|Kctd12|239217|potassium channel tetramerisation domain containing 12
mm9_v1_chr6_-_40985505_40985509	1.21766	NKX3-1.p2	AK007773|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	AK008695|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	AK008460|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	NM_023333|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	BC061093|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene
mm9_v1_chr14_-_51875785_51875786	1.20752	NKX3-1.p2	BC020070|Ear11|93726|eosinophil-associated, ribonuclease A family, member 11	BC027557|Ear11|93726|eosinophil-associated, ribonuclease A family, member 11	NM_053113|Ear11|93726|eosinophil-associated, ribonuclease A family, member 11
mm9_v1_chr9_-_67407509_67407509	1.19586	NKX3-1.p2	NM_001081242|Tln2|70549|talin 2
mm9_v1_chr10_+_23640161_23640211	1.18571	NKX3-1.p2	BC125368|Taar1|111174|trace amine-associated receptor 1	BC125370|Taar1|111174|trace amine-associated receptor 1	NM_053205|Taar1|111174|trace amine-associated receptor 1
mm9_v1_chr4_-_95807732_95807842	1.18492	NKX3-1.p2	NM_001100182|Cyp2j12-ps|242546|cytochrome P450, family 2, subfamily j, polypeptide 12, pseudogene	AK136922|Cyp2j12-ps|242546|cytochrome P450, family 2, subfamily j, polypeptide 12, pseudogene
mm9_v1_chr4_+_21801372_21801440	1.18377	NKX3-1.p2	AK035634|Sfrs18|66625|serine/arginine-rich splicing factor 18
mm9_v1_chr18_+_65237084_65237096	1.1824	NKX3-1.p2	AK163497|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr17_+_24546733_24546845	1.16192	NKX3-1.p2	BC038271|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3
mm9_v1_chr15_+_16707855_16707855	1.14086	NKX3-1.p2	NM_009869|Cdh9|12565|cadherin 9
mm9_v1_chr4_+_101927543_101927649	1.13905	NKX3-1.p2	NM_019840|Pde4b|18578|phosphodiesterase 4B, cAMP specific	AF208023|Pde4b|18578|phosphodiesterase 4B, cAMP specific	AJ297397|Pde4b|18578|phosphodiesterase 4B, cAMP specific	AK031977|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr5_+_90893032_90893045	1.11842	NKX3-1.p2	M16111|Alb|11657|albumin
mm9_v1_chr6_+_134589529_134589529	1.1173	NKX3-1.p2	NM_001170479|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)
mm9_v1_chr2_-_69627542_69627605	1.10628	NKX3-1.p2	BC125570|4930578N16Rik|75051|RIKEN cDNA 4930578N16 gene	BC132491|4930578N16Rik|75051|RIKEN cDNA 4930578N16 gene	BC145015|4930578N16Rik|75051|RIKEN cDNA 4930578N16 gene	NM_001077684|4930578N16Rik|75051|RIKEN cDNA 4930578N16 gene	AK015894|4930578N16Rik|75051|RIKEN cDNA 4930578N16 gene	AK016309|4930578N16Rik|75051|RIKEN cDNA 4930578N16 gene	BC099565|4930578N16Rik|75051|RIKEN cDNA 4930578N16 gene
mm9_v1_chr6_+_57159851_57159851	1.09439	NKX3-1.p2	NM_053235|Vmn1r13|113862|vomeronasal 1 receptor 13
mm9_v1_chr6_-_129281770_129281798	1.0917	NKX3-1.p2	AK076635|4922502D21Rik|381816|RIKEN cDNA 4922502D21 gene	AK132711|4922502D21Rik|381816|RIKEN cDNA 4922502D21 gene	BC089479|4922502D21Rik|381816|RIKEN cDNA 4922502D21 gene	NM_199034|4922502D21Rik|381816|RIKEN cDNA 4922502D21 gene
mm9_v1_chr4_+_137818150_137818165	1.0888	NKX3-1.p2	AB008867|Kif17|16559|kinesin family member 17	NM_001190978|Kif17|16559|kinesin family member 17	NM_010623|Kif17|16559|kinesin family member 17
mm9_v1_chr4_-_36665923_36665995	1.08282	NKX3-1.p2	BC090619|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_001166000|Lingo2|242384|leucine rich repeat and Ig domain containing 2
mm9_v1_chr18_+_35886642_35886642	1.07911	NKX3-1.p2	AK162297|1700066B19Rik|73449|RIKEN cDNA 1700066B19 gene	NM_001033168|1700066B19Rik|73449|RIKEN cDNA 1700066B19 gene
mm9_v1_chr14_-_104243541_104243687	1.07515	NKX3-1.p2	BC026553|Ednrb|13618|endothelin receptor type B
mm9_v1_chr17_+_87316687_87316777	1.07321	NKX3-1.p2	NM_030104|1700090G07Rik|78469|RIKEN cDNA 1700090G07 gene	AK018916|1700090G07Rik|78469|RIKEN cDNA 1700090G07 gene	BC100486|1700090G07Rik|78469|RIKEN cDNA 1700090G07 gene	AK076910|1700090G07Rik|78469|RIKEN cDNA 1700090G07 gene
mm9_v1_chr11_-_69229653_69229709	1.0711	NKX3-1.p2	BC075632|Kdm6b|216850|KDM1 lysine (K)-specific demethylase 6B
mm9_v1_chr7_-_13007839_13007937	1.06558	NKX3-1.p2	AK137311|Zfp551|619331|zinc fingr protein 551	NM_001033820|Zfp551|619331|zinc fingr protein 551	BC141160|Zfp551|619331|zinc fingr protein 551	BC145466|Zfp551|619331|zinc fingr protein 551
mm9_v1_chr8_+_97197870_97198051	1.05586	NKX3-1.p2	AK185594|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK195499|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK205549|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK207967|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK212239|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK214075|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK216087|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK218146|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK220110|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK206178|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK190102|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK205025|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK005851|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein
mm9_v1_chr13_-_27656440_27656472	1.05265	NKX3-1.p2	BC064762|Prl8a9|67310|prolactin family8, subfamily a, member 9	AF158744|Prl8a9|67310|prolactin family8, subfamily a, member 9	AK005409|Prl8a9|67310|prolactin family8, subfamily a, member 9	AK005494|Prl8a9|67310|prolactin family8, subfamily a, member 9	NM_023332|Prl8a9|67310|prolactin family8, subfamily a, member 9
mm9_v1_chr1_-_141755209_141755302	1.05177	NKX3-1.p2	AJ565908|BC026782|545366|cDNA sequence BC026782	M29007|BC026782|545366|cDNA sequence BC026782	AK149511|BC026782|545366|cDNA sequence BC026782	NM_001025575|BC026782|545366|cDNA sequence BC026782
mm9_v1_chr3_-_146433200_146433208	1.04904	NKX3-1.p2	NM_001164198|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr6_-_78418862_78418867	1.04714	NKX3-1.p2	AK008446|Reg3g|19695|regenerating islet-derived 3 gamma	AK008608|Reg3g|19695|regenerating islet-derived 3 gamma	BC061139|Reg3g|19695|regenerating islet-derived 3 gamma	D63361|Reg3g|19695|regenerating islet-derived 3 gamma	NM_011260|Reg3g|19695|regenerating islet-derived 3 gamma
mm9_v1_chr7_-_53493833_53493861	1.04213	NKX3-1.p2	AY246556|Ush1c|72088|Usher syndrome 1C homolog (human)	AF228924|Ush1c|72088|Usher syndrome 1C homolog (human)	AF228925|Ush1c|72088|Usher syndrome 1C homolog (human)	AY103465|Ush1c|72088|Usher syndrome 1C homolog (human)	NM_001163733|Ush1c|72088|Usher syndrome 1C homolog (human)	NM_023649|Ush1c|72088|Usher syndrome 1C homolog (human)	NM_153677|Ush1c|72088|Usher syndrome 1C homolog (human)	BC010819|Ush1c|72088|Usher syndrome 1C homolog (human)
mm9_v1_chrX_+_9424072_9424114	1.04024	NKX3-1.p2	AK006788|1700054O13Rik|67334|RIKEN cDNA 1700054O13 gene	NM_026096|1700054O13Rik|67334|RIKEN cDNA 1700054O13 gene	AK006319|1700054O13Rik|67334|RIKEN cDNA 1700054O13 gene	BC059721|1700054O13Rik|67334|RIKEN cDNA 1700054O13 gene	BC049569|1700054O13Rik|67334|RIKEN cDNA 1700054O13 gene
mm9_v1_chrX_-_22797942_22797952	1.0388	NKX3-1.p2	AK013399|Klhl13|67455|kelch-like 13 (Drosophila)
mm9_v1_chr17_+_19641774_19641774	1.03646	NKX3-1.p2	NM_001104562|Vmn2r100|627537|vomeronasal 2, receptor 100
mm9_v1_chr1_-_164742679_164742679	1.01783	NKX3-1.p2	AF461145|Fmo4|226564|flavin containing monooxygenase 4	NM_144878|Fmo4|226564|flavin containing monooxygenase 4
mm9_v1_chr9_+_117161650_117161701	1.0155	NKX3-1.p2	
mm9_v1_chr4_+_153516477_153516537	1.01214	NKX3-1.p2	NM_021499|Wdr8|59002|WD repeat domain 8	AK156969|Wdr8|59002|WD repeat domain 8	AK172690|Wdr8|59002|WD repeat domain 8	AB034911|Wdr8|59002|WD repeat domain 8	AK160331|Wdr8|59002|WD repeat domain 8	AK011773|Wdr8|59002|WD repeat domain 8	BC016120|Wdr8|59002|WD repeat domain 8	AK051688|Wdr8|59002|WD repeat domain 8
mm9_v1_chr3_-_141645214_141645214	1.00681	NKX3-1.p2	BC065143|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B	NM_007560|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B
mm9_v1_chr2_+_67955769_67955862	1.00631	NKX3-1.p2	NM_020283|B3galt1|26877|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	BC094660|B3galt1|26877|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	BC132246|B3galt1|26877|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	BC132528|B3galt1|26877|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm9_v1_chr14_-_88871202_88871202	0.999422	NKX3-1.p2	AK083114|Pcdh20|219257|protocadherin 20	NM_178685|Pcdh20|219257|protocadherin 20
mm9_v1_chr18_-_39026347_39026400	0.991111	NKX3-1.p2	BC027001|Fgf1|14164|fibroblast growth factor 1	BC037601|Fgf1|14164|fibroblast growth factor 1	AF012926|Fgf1|14164|fibroblast growth factor 1
mm9_v1_chr6_-_82889694_82889743	0.989309	NKX3-1.p2	AB021291|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC057048|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC090625|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK047067|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC094567|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK035993|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK143196|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	NM_001113481|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	NM_011350|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm9_v1_chr4_+_143125856_143125856	0.984628	NKX3-1.p2	NM_001113735|Gm13057|100040861|predicted gene 13057	NM_001113736|Gm13040|100040854|predicted gene 13040
mm9_v1_chr4_+_143141602_143141602	0.984628	NKX3-1.p2	NM_001113735|Gm13057|100040861|predicted gene 13057	NM_001113736|Gm13040|100040854|predicted gene 13040
mm9_v1_chr9_+_54452124_54452126	0.983755	NKX3-1.p2	
mm9_v1_chr18_+_50115628_50115725	0.98046	NKX3-1.p2	AK046910|Dmxl1|240283|Dmx-like 1
mm9_v1_chr9_+_113721698_113721717	0.97499	NKX3-1.p2	AK043551|Clasp2|76499|CLIP associating protein 2	AK148966|Clasp2|76499|CLIP associating protein 2	AK164326|Clasp2|76499|CLIP associating protein 2	NM_001081960|Clasp2|76499|CLIP associating protein 2	NM_029633|Clasp2|76499|CLIP associating protein 2	BC117963|Clasp2|76499|CLIP associating protein 2	BC117964|Clasp2|76499|CLIP associating protein 2	BC131791|Clasp2|76499|CLIP associating protein 2	BC131792|Clasp2|76499|CLIP associating protein 2	BC141415|Clasp2|76499|CLIP associating protein 2
mm9_v1_chr7_+_4874178_4874216	0.955116	NKX3-1.p2	AK078272|Nat14|269854|N-acetyltransferase 14	BC047219|Nat14|269854|N-acetyltransferase 14
mm9_v1_chr14_-_65074739_65074739	0.948523	NKX3-1.p2	BC089311|Msra|110265|methionine sulfoxide reductase A	NM_026322|Msra|110265|methionine sulfoxide reductase A
mm9_v1_chr10_-_61738537_61738571	0.946672	NKX3-1.p2	U89409|Hk1|15275|hexokinase 1	AK218898|Hk1|15275|hexokinase 1
mm9_v1_chr10_+_80720191_80720236	0.945772	NKX3-1.p2	AK018182|Matk|17179|megakaryocyte-associated tyrosine kinase	AK013606|Matk|17179|megakaryocyte-associated tyrosine kinase	S77473|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr19_-_39961258_39961288	0.942293	NKX3-1.p2	NM_001104525|Cyp2c69|100043108|cytochrome P450, family 2, subfamily c, polypeptide 69	BC145630|Cyp2c69|100043108|cytochrome P450, family 2, subfamily c, polypeptide 69
mm9_v1_chr6_+_41810237_41810337	0.94113	NKX3-1.p2	BC119343|Sval2|84543|seminal vesicle antigen-like 2	BC119345|Sval2|84543|seminal vesicle antigen-like 2	AB050614|Sval2|84543|seminal vesicle antigen-like 2	NM_032542|Sval2|84543|seminal vesicle antigen-like 2
mm9_v1_chrX_-_103415034_103415180	0.938443	NKX3-1.p2	AK135097|Taf9b|407786|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_001001176|Taf9b|407786|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr17_+_18288893_18288893	0.929171	NKX3-1.p2	NM_001104541|Vmn2r92|627111|vomeronasal 2, receptor 92
mm9_v1_chr11_-_106642357_106642481	0.925579	NKX3-1.p2	AK011169|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr3_+_30645214_30645214	0.92257	NKX3-1.p2	AK044227|Samd7|75953|sterile alpha motif domain containing 7	NM_029489|Samd7|75953|sterile alpha motif domain containing 7
mm9_v1_chr7_+_52965052_52965376	0.921439	NKX3-1.p2	AK192990|Dbp|13170|D site albumin promoter binding protein
mm9_v1_chr11_+_42234760_42234851	0.912628	NKX3-1.p2	U14419|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	AK034069|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	GU086167|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2
mm9_v1_chr2_-_181433134_181433146	0.910675	NKX3-1.p2	BC087873|4930526D03Rik|277496|RIKEN cDNA 4930526D03 gene	AK076877|4930526D03Rik|277496|RIKEN cDNA 4930526D03 gene	NM_199023|4930526D03Rik|277496|RIKEN cDNA 4930526D03 gene
mm9_v1_chr8_-_37631532_37631612	0.90436	NKX3-1.p2	BC096052|Dlc1|50768|deleted in liver cancer 1	BC028562|Dlc1|50768|deleted in liver cancer 1	BC056230|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr3_+_90145575_90145575	0.90275	NKX3-1.p2	AF411837|Gatad2b|229542|GATA zinc finger domain containing 2B	BC130262|Gatad2b|229542|GATA zinc finger domain containing 2B	NM_139304|Gatad2b|229542|GATA zinc finger domain containing 2B
mm9_v1_chr18_+_37911236_37911432	0.898421	NKX3-1.p2	BC066823|Pcdhgb7|93704|protocadherin gamma subfamily B, 7	AY013809|Pcdhgb7|93704|protocadherin gamma subfamily B, 7	NM_033579|Pcdhgb7|93704|protocadherin gamma subfamily B, 7
mm9_v1_chr5_-_87998014_87998030	0.877103	NKX3-1.p2	AK160466|Sult1d1|53315|sulfotransferase family 1D, member 1	NM_016771|Sult1d1|53315|sulfotransferase family 1D, member 1
mm9_v1_chr10_+_126921038_126921212	0.874994	NKX3-1.p2	BC023826|R3hdm2|71750|R3H domain containing 2
mm9_v1_chr18_+_37839910_37840111	0.871747	NKX3-1.p2	BC054741|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	BC098367|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	AY013804|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	NM_033574|Pcdhgb1|93699|protocadherin gamma subfamily B, 1
mm9_v1_chr7_-_116760660_116760660	0.86908	NKX3-1.p2	NM_001001326|St5|76954|suppression of tumorigenicity 5	NM_029811|St5|76954|suppression of tumorigenicity 5
mm9_v1_chr7_-_52965801_52965838	0.860174	NKX3-1.p2	AK198375|Sphk2|56632|sphingosine kinase 2	AK202851|Sphk2|56632|sphingosine kinase 2
mm9_v1_chr10_-_80496656_80496656	0.858732	NKX3-1.p2	BC005502|Slc39a3|106947|solute carrier family 39 (zinc transporter), member 3	NM_134135|Slc39a3|106947|solute carrier family 39 (zinc transporter), member 3
mm9_v1_chr2_+_164439199_164439221	0.85721	NKX3-1.p2	AY541526|Wfdc6b|433502|WAP four-disulfide core domain 6B	NM_001012725|Wfdc6b|433502|WAP four-disulfide core domain 6B	BC141216|Wfdc6b|433502|WAP four-disulfide core domain 6B
mm9_v1_chr1_-_16647097_16647129	0.855927	NKX3-1.p2	BC028545|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1	AK011757|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1
mm9_v1_chr3_+_105916283_105916305	0.849145	NKX3-1.p2	AK007573|Chia|81600|chitinase, acidic	AK008633|Chia|81600|chitinase, acidic	AK008650|Chia|81600|chitinase, acidic	AK008757|Chia|81600|chitinase, acidic	AK160173|Chia|81600|chitinase, acidic	BC034548|Chia|81600|chitinase, acidic	NM_023186|Chia|81600|chitinase, acidic	AF290003|Chia|81600|chitinase, acidic	DQ349202|Chia|81600|chitinase, acidic	EF094027|Chia|81600|chitinase, acidic	BC011134|Chia|81600|chitinase, acidic	AF154571|Chia|81600|chitinase, acidic
mm9_v1_chr12_-_42212337_42212337	0.846972	NKX3-1.p2	BC069041|Lrrn3|16981|leucine rich repeat protein 3, neuronal	NM_010733|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr11_+_46385014_46385159	0.846255	NKX3-1.p2	NM_001025435|BC053393|407814|cDNA sequence BC053393	BC052651|BC053393|407814|cDNA sequence BC053393	AK166706|BC053393|407814|cDNA sequence BC053393	AK166838|BC053393|407814|cDNA sequence BC053393	AK145729|BC053393|407814|cDNA sequence BC053393	AK140690|BC053393|407814|cDNA sequence BC053393
mm9_v1_chr1_+_97230610_97230736	0.842014	NKX3-1.p2	AK152164|Fam174a|67698|family with sequence similarity 174, member A
mm9_v1_chrX_-_151013872_151013872	0.830527	NKX3-1.p2	BC100469|Gm5647|434881|predicted gene 5647	NM_001037167|Gm5647|434881|predicted gene 5647
mm9_v1_chr1_+_100028032_100028043	0.828405	NKX3-1.p2	AK007349|1810006J02Rik|69030|RIKEN cDNA 1810006J02 gene
mm9_v1_chr1_+_6792987_6793017	0.827408	NKX3-1.p2	BC032273|St18|240690|suppression of tumorigenicity 18
mm9_v1_chrX_-_147531030_147531085	0.823039	NKX3-1.p2	BC037444|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC025008|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	AK044504|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC049668|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_001164578|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_175146|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)
mm9_v1_chr19_-_40476799_40476801	0.822318	NKX3-1.p2	NM_001034964|Sorbs1|20411|sorbin and SH3 domain containing 1	AK146712|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr6_-_130336891_130336991	0.820752	NKX3-1.p2	AY078436|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	NM_016659|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	AF419250|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	AF444273|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1
mm9_v1_chr7_+_24443334_24443439	0.81807	NKX3-1.p2	AF324873|Vmn1r172|81010|vomeronasal 1 receptor 172	NM_030735|Vmn1r172|81010|vomeronasal 1 receptor 172	BC139316|Vmn1r172|81010|vomeronasal 1 receptor 172	BC139317|Vmn1r172|81010|vomeronasal 1 receptor 172	BC145601|Vmn1r172|81010|vomeronasal 1 receptor 172
mm9_v1_chr14_+_52730577_52730615	0.816835	NKX3-1.p2	BC081545|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1	NM_001168515|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1	NM_023879|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1	AK020800|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1	AK044753|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1	AY008297|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1	AY914560|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1	BC086692|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1	BC016092|Rpgrip1|77945|retinitis pigmentosa GTPase regulator interacting protein 1
mm9_v1_chr13_+_27404495_27404496	0.81415	NKX3-1.p2	AF015563|Prl6a1|19111|prolactin family 6, subfamily a, member 1	NM_011166|Prl6a1|19111|prolactin family 6, subfamily a, member 1	AF011384|Prl6a1|19111|prolactin family 6, subfamily a, member 1
mm9_v1_chr16_+_57152994_57153228	0.812139	NKX3-1.p2	BC025450|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK011763|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm9_v1_chrX_+_73509642_73509644	0.811444	NKX3-1.p2	BC048515|Gm4937|238829|predicted gene 4937	NM_001013760|Gm4937|238829|predicted gene 4937
mm9_v1_chr2_-_37502738_37502804	0.805476	NKX3-1.p2	X84692|Strbp|20744|spermatid perinuclear RNA binding protein	NM_009261|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr19_+_23241546_23241602	0.803004	NKX3-1.p2	AK009928|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr17_+_17539908_17539941	0.80211	NKX3-1.p2	AF351204|Lix1|66643|limb expression 1 homolog (chicken)
mm9_v1_chr5_-_107003702_107003736	0.792885	NKX3-1.p2	AK087483|Gm8350|666892|predicted gene 8350
mm9_v1_chrX_+_95345000_95345120	0.790042	NKX3-1.p2	X59592|Ar|11835|androgen receptor	S56585|Ar|11835|androgen receptor	AK133647|Ar|11835|androgen receptor	NM_013476|Ar|11835|androgen receptor	X53779|Ar|11835|androgen receptor	X59411|Ar|11835|androgen receptor	M37890|Ar|11835|androgen receptor
mm9_v1_chr4_-_82698070_82698070	0.782373	NKX3-1.p2	AB160986|Frem1|329872|Fras1 related extracellular matrix protein 1	NM_001198811|Frem1|329872|Fras1 related extracellular matrix protein 1
mm9_v1_chr1_+_136079079_136079104	0.767896	NKX3-1.p2	CT010283|Chi3l1|12654|chitinase 3-like 1	EU313768|Chi3l1|12654|chitinase 3-like 1
mm9_v1_chr6_+_121250304_121250325	0.765156	NKX3-1.p2	AK149557|Slc6a13|14412|solute carrier family 6 (neurotransmitter transporter, GABA), member 13	AK002794|Slc6a13|14412|solute carrier family 6 (neurotransmitter transporter, GABA), member 13	AK078399|Slc6a13|14412|solute carrier family 6 (neurotransmitter transporter, GABA), member 13	BC029637|Slc6a13|14412|solute carrier family 6 (neurotransmitter transporter, GABA), member 13	NM_144512|Slc6a13|14412|solute carrier family 6 (neurotransmitter transporter, GABA), member 13	BC023117|Slc6a13|14412|solute carrier family 6 (neurotransmitter transporter, GABA), member 13
mm9_v1_chr4_+_136166351_136166390	0.762351	NKX3-1.p2	AK016074|4930549C01Rik|67663|RIKEN cDNA 4930549C01 gene	NM_026300|4930549C01Rik|67663|RIKEN cDNA 4930549C01 gene	BC048442|4930549C01Rik|67663|RIKEN cDNA 4930549C01 gene	AK015053|4930549C01Rik|67663|RIKEN cDNA 4930549C01 gene
mm9_v1_chr8_-_71080927_71080932	0.761727	NKX3-1.p2	AK033522|Csgalnact1|234356|chondroitin sulfate N-acetylgalactosaminyltransferase 1	AK133567|Csgalnact1|234356|chondroitin sulfate N-acetylgalactosaminyltransferase 1
mm9_v1_chr1_+_162125349_162125420	0.757045	NKX3-1.p2	AK007673|Mrps14|64659|mitochondrial ribosomal protein S14	AK010242|Mrps14|64659|mitochondrial ribosomal protein S14	AK144195|Mrps14|64659|mitochondrial ribosomal protein S14	AK083352|Mrps14|64659|mitochondrial ribosomal protein S14	NM_025474|Mrps14|64659|mitochondrial ribosomal protein S14	BC044057|Mrps14|64659|mitochondrial ribosomal protein S14
mm9_v1_chr1_-_163061538_163061643	0.75653	NKX3-1.p2	BC060183|Klhl20|226541|kelch-like 20 (Drosophila)	AK053102|Klhl20|226541|kelch-like 20 (Drosophila)	AK053371|Klhl20|226541|kelch-like 20 (Drosophila)	AK054169|Klhl20|226541|kelch-like 20 (Drosophila)	BC019571|Klhl20|226541|kelch-like 20 (Drosophila)	AK220547|Klhl20|226541|kelch-like 20 (Drosophila)	NM_001039482|Klhl20|226541|kelch-like 20 (Drosophila)
mm9_v1_chr6_-_129826635_129826689	0.749612	NKX3-1.p2	BC132236|Klra17|170733|killer cell lectin-like receptor, subfamily A, member 17	AB033769|Klra17|170733|killer cell lectin-like receptor, subfamily A, member 17	AK080021|Klra17|170733|killer cell lectin-like receptor, subfamily A, member 17	NM_133203|Klra17|170733|killer cell lectin-like receptor, subfamily A, member 17
mm9_v1_chr5_-_88956788_88956921	0.744748	NKX3-1.p2	J00544|Igj|16069|immunoglobulin joining chain	AK078865|Igj|16069|immunoglobulin joining chain	M90766|Igj|16069|immunoglobulin joining chain	BC006026|Igj|16069|immunoglobulin joining chain	AK160344|Igj|16069|immunoglobulin joining chain	NM_152839|Igj|16069|immunoglobulin joining chain
mm9_v1_chr11_+_83251195_83251208	0.741858	NKX3-1.p2	AK006174|1700020L24Rik|66330|RIKEN cDNA 1700020L24 gene	NM_025492|1700020L24Rik|66330|RIKEN cDNA 1700020L24 gene	AK005809|1700020L24Rik|66330|RIKEN cDNA 1700020L24 gene	BC152320|1700020L24Rik|66330|RIKEN cDNA 1700020L24 gene
mm9_v1_chr4_-_106351493_106351548	0.733825	NKX3-1.p2	AK012652|Ttc4|72354|tetratricopeptide repeat domain 4	AK088684|Ttc4|72354|tetratricopeptide repeat domain 4	AK133931|Ttc4|72354|tetratricopeptide repeat domain 4	NM_028209|Ttc4|72354|tetratricopeptide repeat domain 4
mm9_v1_chr11_-_46512331_46512331	0.731807	NKX3-1.p2	NM_001161355|Timd2|171284|T-cell immunoglobulin and mucin domain containing 2
mm9_v1_chr1_-_53244460_53244460	0.729494	NKX3-1.p2	AK006101|1700019A02Rik|69397|RIKEN cDNA 1700019A02 gene	NM_027070|1700019A02Rik|69397|RIKEN cDNA 1700019A02 gene
mm9_v1_chr2_-_155984800_155984951	0.728691	NKX3-1.p2	AK134091|Rbm39|170791|RNA binding motif protein 39
mm9_v1_chr13_+_55885928_55886022	0.726434	NKX3-1.p2	BC089518|Catsper3|76856|cation channel, sperm associated 3	AK014942|Catsper3|76856|cation channel, sperm associated 3	NM_029772|Catsper3|76856|cation channel, sperm associated 3	AY263400|Catsper3|76856|cation channel, sperm associated 3	HM179540|Catsper3|76856|cation channel, sperm associated 3	HM179541|Catsper3|76856|cation channel, sperm associated 3
mm9_v1_chr2_+_127429570_127429640	0.72528	NKX3-1.p2	AK047438|Mrps5|77721|mitochondrial ribosomal protein S5
mm9_v1_chr7_+_107685608_107685745	0.724215	NKX3-1.p2	AK161506|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	NM_183270|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	AK019895|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	AK088786|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	BC116995|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	BC116997|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	BC096605|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	AK008883|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	BC048574|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8
mm9_v1_chr1_-_141677744_141677835	0.720883	NKX3-1.p2	AJ871401|EG214403|214403|predicted gene, EG214403	AJ871402|EG214403|214403|predicted gene, EG214403	BC141136|EG214403|214403|predicted gene, EG214403	BC145444|EG214403|214403|predicted gene, EG214403	M29009|EG214403|214403|predicted gene, EG214403	NM_001029977|EG214403|214403|predicted gene, EG214403	NM_001160303|EG214403|214403|predicted gene, EG214403	NM_001160304|EG214403|214403|predicted gene, EG214403
mm9_v1_chr1_-_165015800_165015800	0.714988	NKX3-1.p2	AK019544|4921528O07Rik|78258|RIKEN cDNA 4921528O07 gene	NM_030071|4921528O07Rik|78258|RIKEN cDNA 4921528O07 gene
mm9_v1_chr5_+_88237145_88237179	0.713716	NKX3-1.p2	AK164767|Csn1s2b|12992|casein alpha s2-like B	AK085744|Csn1s2b|12992|casein alpha s2-like B	NM_009973|Csn1s2b|12992|casein alpha s2-like B	AK164763|Csn1s2b|12992|casein alpha s2-like B	AK021343|Csn1s2b|12992|casein alpha s2-like B	AK052780|Csn1s2b|12992|casein alpha s2-like B	AK052789|Csn1s2b|12992|casein alpha s2-like B	AK085747|Csn1s2b|12992|casein alpha s2-like B	AK164768|Csn1s2b|12992|casein alpha s2-like B	AK021337|Csn1s2b|12992|casein alpha s2-like B	AK164795|Csn1s2b|12992|casein alpha s2-like B	BC002084|Csn1s2b|12992|casein alpha s2-like B	J00379|Csn1s2b|12992|casein alpha s2-like B	V00740|Csn1s2b|12992|casein alpha s2-like B
mm9_v1_chr4_-_134409199_134409236	0.704068	NKX3-1.p2	BC042733|Tmem57|66146|transmembrane protein 57	BC044802|Tmem57|66146|transmembrane protein 57	BC037192|Tmem57|66146|transmembrane protein 57	BC019186|Tmem57|66146|transmembrane protein 57	AK020354|Tmem57|66146|transmembrane protein 57
mm9_v1_chr17_+_41097513_41097693	0.703677	NKX3-1.p2	AK029425|Mut|17850|methylmalonyl-Coenzyme A mutase	AK012766|Mut|17850|methylmalonyl-Coenzyme A mutase
mm9_v1_chr9_-_39411708_39411856	0.701487	NKX3-1.p2	AK049098|AW551984|244810|expressed sequence AW551984	NM_178737|AW551984|244810|expressed sequence AW551984	BC061211|AW551984|244810|expressed sequence AW551984
mm9_v1_chr13_-_65307023_65307023	0.698997	NKX3-1.p2	NM_175290|Nlrp4f|97895|NLR family, pyrin domain containing 4F
mm9_v1_chr2_-_73705966_73706060	0.689974	NKX3-1.p2	
mm9_v1_chr3_+_84756090_84756352	0.684518	NKX3-1.p2	AF391192|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_080428|Fbxw7|50754|F-box and WD-40 domain protein 7	AF427101|Fbxw7|50754|F-box and WD-40 domain protein 7	BC131648|Fbxw7|50754|F-box and WD-40 domain protein 7	AB221593|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr2_-_4544898_4544915	0.681005	NKX3-1.p2	BC019370|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)
mm9_v1_chr2_-_62321694_62321709	0.678855	NKX3-1.p2	BC012975|Gcg|14526|glucagon	AK007911|Gcg|14526|glucagon	AK148544|Gcg|14526|glucagon	AF276754|Gcg|14526|glucagon	NM_008100|Gcg|14526|glucagon
mm9_v1_chr11_+_108256590_108256640	0.678306	NKX3-1.p2	Y11356|Apoh|11818|apolipoprotein H	NM_013475|Apoh|11818|apolipoprotein H	BC011037|Apoh|11818|apolipoprotein H	BC019811|Apoh|11818|apolipoprotein H	AK010926|Apoh|11818|apolipoprotein H	S70439|Apoh|11818|apolipoprotein H	BC053338|Apoh|11818|apolipoprotein H	D10056|Apoh|11818|apolipoprotein H
mm9_v1_chr11_+_46553724_46553728	0.678086	NKX3-1.p2	NM_001166632|Havcr1|171283|hepatitis A virus cellular receptor 1	BC053400|Havcr1|171283|hepatitis A virus cellular receptor 1
mm9_v1_chr16_+_43321404_43321450	0.676847	NKX3-1.p2	
mm9_v1_chr17_-_28697643_28697658	0.675196	NKX3-1.p2	BC042935|Clps|109791|colipase, pancreatic	AF414676|Clps|109791|colipase, pancreatic	AF414677|Clps|109791|colipase, pancreatic	AK028141|Clps|109791|colipase, pancreatic	AK008635|Clps|109791|colipase, pancreatic	AK008834|Clps|109791|colipase, pancreatic	AK008839|Clps|109791|colipase, pancreatic	AK008874|Clps|109791|colipase, pancreatic	AK008879|Clps|109791|colipase, pancreatic	AK019005|Clps|109791|colipase, pancreatic	AK019047|Clps|109791|colipase, pancreatic	AK008815|Clps|109791|colipase, pancreatic	NM_025469|Clps|109791|colipase, pancreatic
mm9_v1_chr19_-_57290515_57290521	0.673686	NKX3-1.p2	BC141083|Ablim1|226251|actin-binding LIM protein 1	AF404774|Ablim1|226251|actin-binding LIM protein 1	NM_178688|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr6_-_56319574_56319627	0.673056	NKX3-1.p2	AK077123|Pde1c|18575|phosphodiesterase 1C	AK015375|Pde1c|18575|phosphodiesterase 1C	AK014887|Pde1c|18575|phosphodiesterase 1C	AK133243|Pde1c|18575|phosphodiesterase 1C	AK029531|Pde1c|18575|phosphodiesterase 1C	NM_001159955|Pde1c|18575|phosphodiesterase 1C	NM_001159956|Pde1c|18575|phosphodiesterase 1C	NM_001159957|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr11_-_51449370_51449402	0.669884	NKX3-1.p2	AK075599|Rmnd5b|66089|required for meiotic nuclear division 5 homolog B (S. cerevisiae)	NM_025346|Rmnd5b|66089|required for meiotic nuclear division 5 homolog B (S. cerevisiae)
mm9_v1_chr7_-_30691111_30691122	0.666827	NKX3-1.p2	AK147732|Zfp27|22689|zinc finger protein 27	NM_001037707|Zfp27|22689|zinc finger protein 27	NM_011754|Zfp27|22689|zinc finger protein 27
mm9_v1_chr19_+_40066913_40066929	0.666803	NKX3-1.p2	AK005017|Cyp2c37|13096|cytochrome P450, family 2. subfamily c, polypeptide 37	NM_010001|Cyp2c37|13096|cytochrome P450, family 2. subfamily c, polypeptide 37	BC057912|Cyp2c37|13096|cytochrome P450, family 2. subfamily c, polypeptide 37	AF047542|Cyp2c37|13096|cytochrome P450, family 2. subfamily c, polypeptide 37
mm9_v1_chr15_-_95358989_95359075	0.666325	NKX3-1.p2	AK039790|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr16_-_84955488_84955582	0.665886	NKX3-1.p2	AK190067|App|11820|amyloid beta (A4) precursor protein	AK194558|App|11820|amyloid beta (A4) precursor protein	AK213784|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr17_+_78907402_78907511	0.664707	NKX3-1.p2	AK158117|Vit|74199|vitrin	NM_001197028|Vit|74199|vitrin	NM_028813|Vit|74199|vitrin	BC034120|Vit|74199|vitrin	AF454755|Vit|74199|vitrin	AK013193|Vit|74199|vitrin	AK051606|Vit|74199|vitrin
mm9_v1_chr7_+_24416996_24417006	0.663689	NKX3-1.p2	AF324871|Vmn1r171|81012|vomeronasal 1 receptor 171	BC111911|Vmn1r171|81012|vomeronasal 1 receptor 171	NM_030737|Vmn1r171|81012|vomeronasal 1 receptor 171
mm9_v1_chr1_-_72905107_72905143	0.654369	NKX3-1.p2	AK011683|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr17_+_70911084_70911126	0.650373	NKX3-1.p2	NM_001128181|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK136926|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr7_-_108437135_108437187	0.650154	NKX3-1.p2	
mm9_v1_chr5_-_147396407_147396450	0.644969	NKX3-1.p2	D21061|Gpr12|14738|G-protein coupled receptor 12
mm9_v1_chr3_-_92730151_92730169	0.644242	NKX3-1.p2	BC100538|Lce3a|545548|late cornified envelope 3A	NM_001039594|Lce3a|545548|late cornified envelope 3A
mm9_v1_chr16_-_88885333_88885333	0.644199	NKX3-1.p2	AF345294|Krtap16-4|170654|keratin associated protein 16-4	BC116200|Krtap16-4|170654|keratin associated protein 16-4	BC116201|Krtap16-4|170654|keratin associated protein 16-4	NM_130873|Krtap16-4|170654|keratin associated protein 16-4
mm9_v1_chr14_+_21520038_21520084	0.643068	NKX3-1.p2	
mm9_v1_chrX_+_149574541_149574624	0.642597	NKX3-1.p2	BC069180|Rragb|245670|Ras-related GTP binding B
mm9_v1_chr3_+_51028368_51028391	0.634337	NKX3-1.p2	AK087790|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	NM_009834|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	AF183960|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	AK149340|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)
mm9_v1_chr6_+_133242233_133242233	0.634036	NKX3-1.p2	AK017421|5530400C23Rik|232426|RIKEN cDNA 5530400C23 gene	NM_027784|5530400C23Rik|232426|RIKEN cDNA 5530400C23 gene
mm9_v1_chr5_-_97885939_97886039	0.633847	NKX3-1.p2	AK075761|Gk2|14626|glycerol kinase 2	BC061147|Gk2|14626|glycerol kinase 2	AF117734|Gk2|14626|glycerol kinase 2	NM_010294|Gk2|14626|glycerol kinase 2	BC050764|Gk2|14626|glycerol kinase 2
mm9_v1_chr1_+_136078939_136079071	0.632873	NKX3-1.p2	NM_007695|Chi3l1|12654|chitinase 3-like 1	AK051475|Chi3l1|12654|chitinase 3-like 1	AK155412|Chi3l1|12654|chitinase 3-like 1	BC003780|Chi3l1|12654|chitinase 3-like 1	BC004734|Chi3l1|12654|chitinase 3-like 1	BC005611|Chi3l1|12654|chitinase 3-like 1
mm9_v1_chr14_+_96280472_96280516	0.631854	NKX3-1.p2	BC049573|4921530L21Rik|66732|RIKEN cDNA 4921530L21 gene	AK014987|4921530L21Rik|66732|RIKEN cDNA 4921530L21 gene	NM_025733|4921530L21Rik|66732|RIKEN cDNA 4921530L21 gene	AK005846|4921530L21Rik|66732|RIKEN cDNA 4921530L21 gene
mm9_v1_chr2_+_121986435_121986443	0.631126	NKX3-1.p2	AF334958|Trim69|70928|tripartite motif-containing 69	NM_080510|Trim69|70928|tripartite motif-containing 69	AK014923|Trim69|70928|tripartite motif-containing 69	BC050815|Trim69|70928|tripartite motif-containing 69
mm9_v1_chr13_+_27248667_27248686	0.629471	NKX3-1.p2	AF525161|Prl3d3|215029|prolactin family 3, subfamily d, member 3	NM_172156|Prl3d3|215029|prolactin family 3, subfamily d, member 3	BC068253|Prl3d3|215029|prolactin family 3, subfamily d, member 3
mm9_v1_chrX_-_102265380_102265463	0.628291	NKX3-1.p2	AK153718|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC019699|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK017459|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085485|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085098|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084980|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC055463|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK080296|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK043766|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK047017|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084653|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK144934|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK157237|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK164650|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene
mm9_v1_chr2_-_156712810_156712927	0.628133	NKX3-1.p2	AK030877|Sla2|77799|Src-like-adaptor 2	AK138709|Sla2|77799|Src-like-adaptor 2	NM_029983|Sla2|77799|Src-like-adaptor 2	AF434990|Sla2|77799|Src-like-adaptor 2	AF287467|Sla2|77799|Src-like-adaptor 2	BC052655|Sla2|77799|Src-like-adaptor 2	AK088672|Sla2|77799|Src-like-adaptor 2
mm9_v1_chr10_+_72117619_72117694	0.624538	NKX3-1.p2	BC027100|Zwint|52696|ZW10 interactor	AK004305|Zwint|52696|ZW10 interactor	AK134380|Zwint|52696|ZW10 interactor	NM_025635|Zwint|52696|ZW10 interactor	AK008144|Zwint|52696|ZW10 interactor	AK082215|Zwint|52696|ZW10 interactor	AK075977|Zwint|52696|ZW10 interactor	AK013556|Zwint|52696|ZW10 interactor	BC034870|Zwint|52696|ZW10 interactor	BC013559|Zwint|52696|ZW10 interactor	AK184469|Zwint|52696|ZW10 interactor
mm9_v1_chr14_-_65716932_65716942	0.606207	NKX3-1.p2	NM_018788|Extl3|54616|exostoses (multiple)-like 3
mm9_v1_chr13_+_27186058_27186083	0.603856	NKX3-1.p2	AK082929|Prl3d1|18775|prolactin family 3, subfamily d, member 1	NM_008864|Prl3d1|18775|prolactin family 3, subfamily d, member 1	BC064736|Prl3d1|18775|prolactin family 3, subfamily d, member 1	M35662|Prl3d1|18775|prolactin family 3, subfamily d, member 1	AF525162|Prl3d1|18775|prolactin family 3, subfamily d, member 1
mm9_v1_chr3_-_115832327_115832378	0.603414	NKX3-1.p2	U12884|Vcam1|22329|vascular cell adhesion molecule 1	M84487|Vcam1|22329|vascular cell adhesion molecule 1	L08431|Vcam1|22329|vascular cell adhesion molecule 1	BC011159|Vcam1|22329|vascular cell adhesion molecule 1	AK016465|Vcam1|22329|vascular cell adhesion molecule 1	AK030195|Vcam1|22329|vascular cell adhesion molecule 1	AK143401|Vcam1|22329|vascular cell adhesion molecule 1	AK162954|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chr15_+_12082671_12082674	0.601946	NKX3-1.p2	AK158938|Zfr|22763|zinc finger RNA binding protein
mm9_v1_chr10_-_6806261_6806284	0.601598	NKX3-1.p2	AK002363|Iyd|70337|iodotyrosine deiodinase	NM_027391|Iyd|70337|iodotyrosine deiodinase	BC023358|Iyd|70337|iodotyrosine deiodinase
mm9_v1_chr18_+_37424591_37424651	0.598525	NKX3-1.p2	BC132112|Pcdhb1|93872|protocadherin beta 1	BC132296|Pcdhb1|93872|protocadherin beta 1	AY013770|Pcdhb1|93872|protocadherin beta 1	NM_053126|Pcdhb1|93872|protocadherin beta 1
mm9_v1_chr7_+_24919177_24919260	0.594464	NKX3-1.p2	NM_019941|Zfp235|56525|zinc finger protein 235	AK045726|Zfp235|56525|zinc finger protein 235	AK002713|Zfp235|56525|zinc finger protein 235	AK147833|Zfp235|56525|zinc finger protein 235	AF167321|Zfp235|56525|zinc finger protein 235	AK139127|Zfp235|56525|zinc finger protein 235	BC099965|Zfp235|56525|zinc finger protein 235
mm9_v1_chr7_-_25230700_25230700	0.593399	NKX3-1.p2	AK089224|Irgc1|210145|immunity-related GTPase family, cinema 1	NM_199013|Irgc1|210145|immunity-related GTPase family, cinema 1
mm9_v1_chr10_-_80962881_80962881	0.591315	NKX3-1.p2	AJ006074|S1pr4|13611|sphingosine-1-phosphate receptor 4	NM_010102|S1pr4|13611|sphingosine-1-phosphate receptor 4
mm9_v1_chr6_-_40981647_40981696	0.584491	NKX3-1.p2	AK007775|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene
mm9_v1_chr6_-_102414660_102414660	0.579955	NKX3-1.p2	NM_008779|Cntn3|18488|contactin 3
mm9_v1_chr17_-_37747723_37747723	0.577288	NKX3-1.p2	BC139226|Olfr115|257908|olfactory receptor 115	BC139227|Olfr115|257908|olfactory receptor 115	NM_001011753|Olfr115|257908|olfactory receptor 115
mm9_v1_chr1_-_36650176_36650176	0.573071	NKX3-1.p2	AK006300|Fam178b|381337|family with sequence similarity 178, member B	NM_027957|Fam178b|381337|family with sequence similarity 178, member B
mm9_v1_chr2_+_78710638_78710757	0.572164	NKX3-1.p2	AF003346|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)
mm9_v1_chr14_-_120441639_120441656	0.569558	NKX3-1.p2	AK085382|Oxgr1|239283|oxoglutarate (alpha-ketoglutarate) receptor 1	AK142510|Oxgr1|239283|oxoglutarate (alpha-ketoglutarate) receptor 1	NM_001001490|Oxgr1|239283|oxoglutarate (alpha-ketoglutarate) receptor 1
mm9_v1_chr5_+_118426792_118426794	0.568969	NKX3-1.p2	AB093270|Fbxo21|231670|F-box protein 21
mm9_v1_chr5_+_34974750_34974884	0.563876	NKX3-1.p2	
mm9_v1_chr8_-_63433528_63433596	0.563151	NKX3-1.p2	BC057133|Clcn3|12725|chloride channel 3	NM_173876|Clcn3|12725|chloride channel 3
mm9_v1_chr11_-_5662259_5662400	0.559986	NKX3-1.p2	BC066994|Urgcp|72046|upregulator of cell proliferation	AK035580|Urgcp|72046|upregulator of cell proliferation	AK041953|Urgcp|72046|upregulator of cell proliferation	NM_001077661|Urgcp|72046|upregulator of cell proliferation	AK037923|Urgcp|72046|upregulator of cell proliferation	AK053862|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr2_+_110561733_110561771	0.559632	NKX3-1.p2	AY198336|Muc15|269328|mucin 15	AK052840|Muc15|269328|mucin 15	AK142590|Muc15|269328|mucin 15	NM_172979|Muc15|269328|mucin 15	BC094506|Muc15|269328|mucin 15	BC116796|Muc15|269328|mucin 15	BC119176|Muc15|269328|mucin 15
mm9_v1_chr7_+_147129687_147129754	0.554503	NKX3-1.p2	AK131968|Utf1|22286|undifferentiated embryonic cell transcription factor 1	AK010589|Utf1|22286|undifferentiated embryonic cell transcription factor 1	AY606111|Utf1|22286|undifferentiated embryonic cell transcription factor 1	AK010280|Utf1|22286|undifferentiated embryonic cell transcription factor 1	BC138841|Utf1|22286|undifferentiated embryonic cell transcription factor 1	BC138842|Utf1|22286|undifferentiated embryonic cell transcription factor 1	D31647|Utf1|22286|undifferentiated embryonic cell transcription factor 1	NM_009482|Utf1|22286|undifferentiated embryonic cell transcription factor 1
mm9_v1_chr16_-_16829386_16829548	0.551976	NKX3-1.p2	AF173866|Spag6|50525|sperm associated antigen 6	BC090660|Spag6|50525|sperm associated antigen 6	AK053966|Spag6|50525|sperm associated antigen 6	AK005732|Spag6|50525|sperm associated antigen 6	BC100455|Spag6|50525|sperm associated antigen 6	AK054199|Spag6|50525|sperm associated antigen 6	NM_015773|Spag6|50525|sperm associated antigen 6	AK164680|Spag6|50525|sperm associated antigen 6
mm9_v1_chr12_+_78576551_78576710	0.551431	NKX3-1.p2	AK188352|Fut8|53618|fucosyltransferase 8	AK210295|Fut8|53618|fucosyltransferase 8	AK216622|Fut8|53618|fucosyltransferase 8
mm9_v1_chr17_+_80706746_80706746	0.550395	NKX3-1.p2	NM_001145452|Arhgef33|381112|Rho guanine nucleotide exchange factor (GEF) 33
mm9_v1_chr5_+_102910409_102910555	0.54597	NKX3-1.p2	AK080986|Arhgap24|231532|Rho GTPase activating protein 24	NM_029270|Arhgap24|231532|Rho GTPase activating protein 24	NM_146161|Arhgap24|231532|Rho GTPase activating protein 24	AK052395|Arhgap24|231532|Rho GTPase activating protein 24
mm9_v1_chr11_-_106642684_106642809	0.545212	NKX3-1.p2	AK149022|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr15_-_99762083_99762088	0.544289	NKX3-1.p2	AK006542|1700030F18Rik|72277|RIKEN cDNA 1700030F18 gene	BC048613|1700030F18Rik|72277|RIKEN cDNA 1700030F18 gene	NM_028180|1700030F18Rik|72277|RIKEN cDNA 1700030F18 gene
mm9_v1_chr3_-_98662116_98662184	0.542862	NKX3-1.p2	BC052659|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	M58567|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1
mm9_v1_chr2_-_122011924_122011924	0.540496	NKX3-1.p2	AK015195|Patl2|67578|protein associated with topoisomerase II homolog 2 (yeast)	NM_026251|Patl2|67578|protein associated with topoisomerase II homolog 2 (yeast)
mm9_v1_chr2_-_140497116_140497135	0.533774	NKX3-1.p2	AK129369|Flrt3|71436|fibronectin leucine rich transmembrane protein 3
mm9_v1_chr13_-_74460431_74460546	0.524056	NKX3-1.p2	
mm9_v1_chr4_-_118890772_118890821	0.515007	NKX3-1.p2	BC048569|4930538K18Rik|75180|RIKEN cDNA 4930538K18 gene	AK015991|4930538K18Rik|75180|RIKEN cDNA 4930538K18 gene	AK053970|4930538K18Rik|75180|RIKEN cDNA 4930538K18 gene	NM_029198|4930538K18Rik|75180|RIKEN cDNA 4930538K18 gene
mm9_v1_chr13_-_61304752_61304770	0.51421	NKX3-1.p2	AF223401|Cts6|58518|cathepsin 6	NM_021445|Cts6|58518|cathepsin 6	BC099455|Cts6|58518|cathepsin 6	AY014781|Cts6|58518|cathepsin 6	AK005518|Cts6|58518|cathepsin 6
mm9_v1_chr9_-_42062436_42062522	0.514009	NKX3-1.p2	AK050439|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)	AK165139|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)
mm9_v1_chr1_-_167390568_167390623	0.510815	NKX3-1.p2	NM_028759|Dcaf6|74106|DDB1 and CUL4 associated factor 6
mm9_v1_chr1_+_174886898_174886898	0.510113	NKX3-1.p2	BC119298|Olfr16|18313|olfactory receptor 16	BC119300|Olfr16|18313|olfactory receptor 16	NM_008763|Olfr16|18313|olfactory receptor 16
mm9_v1_chrX_+_149574498_149574532	0.499123	NKX3-1.p2	NM_001004154|Rragb|245670|Ras-related GTP binding B	BC070407|Rragb|245670|Ras-related GTP binding B
mm9_v1_chr19_-_47044056_47044056	0.496496	NKX3-1.p2	NM_001164365|Nt5c2|76952|5'-nucleotidase, cytosolic II
mm9_v1_chr16_+_43247396_43247452	0.494933	NKX3-1.p2	AK005028|Zbtb20|56490|zinc finger and BTB domain containing 20	NM_019778|Zbtb20|56490|zinc finger and BTB domain containing 20	NM_181058|Zbtb20|56490|zinc finger and BTB domain containing 20	BC031114|Zbtb20|56490|zinc finger and BTB domain containing 20
mm9_v1_chr10_+_13686174_13686209	0.49493	NKX3-1.p2	AK147244|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147348|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147655|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	NM_010437|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2
mm9_v1_chr9_+_3335139_3335230	0.491877	NKX3-1.p2	AK160783|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	BC050863|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	NM_026303|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)
mm9_v1_chr5_+_104599721_104599730	0.491711	NKX3-1.p2	U67916|Dspp|666279|dentin sialophosphoprotein	BC116172|Dspp|666279|dentin sialophosphoprotein	BC116173|Dspp|666279|dentin sialophosphoprotein	BC129802|Dspp|666279|dentin sialophosphoprotein	NM_010080|Dspp|666279|dentin sialophosphoprotein
mm9_v1_chr4_-_141567551_141567551	0.490345	NKX3-1.p2	NM_177868|Fhad1|329977|forkhead-associated (FHA) phosphopeptide binding domain 1
mm9_v1_chr16_+_4937622_4937664	0.486293	NKX3-1.p2	AK189949|Mgrn1|17237|mahogunin, ring finger 1	AK194956|Mgrn1|17237|mahogunin, ring finger 1	AK218167|Mgrn1|17237|mahogunin, ring finger 1
mm9_v1_chr5_+_145965427_145965536	0.48509	NKX3-1.p2	NM_001167944|Zkscan5|22757|zinc finger with KRAB and SCAN domains 5	NM_016683|Zkscan5|22757|zinc finger with KRAB and SCAN domains 5	AK173086|Zkscan5|22757|zinc finger with KRAB and SCAN domains 5	AK019484|Zkscan5|22757|zinc finger with KRAB and SCAN domains 5	BC060248|Zkscan5|22757|zinc finger with KRAB and SCAN domains 5
mm9_v1_chr13_-_81772121_81772142	0.484563	NKX3-1.p2	BC080679|Gpr98|110789|G protein-coupled receptor 98	AB086166|Gpr98|110789|G protein-coupled receptor 98	AB086167|Gpr98|110789|G protein-coupled receptor 98	AK053565|Gpr98|110789|G protein-coupled receptor 98	AF435926|Gpr98|110789|G protein-coupled receptor 98	NM_054053|Gpr98|110789|G protein-coupled receptor 98
mm9_v1_chr9_+_78039765_78039781	0.478178	NKX3-1.p2	NM_010357|Gsta4|14860|glutathione S-transferase, alpha 4
mm9_v1_chr8_-_47292973_47292977	0.47487	NKX3-1.p2	AK186988|Slc25a4|11739|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4
mm9_v1_chr8_-_125421315_125421317	0.470366	NKX3-1.p2	
mm9_v1_chr2_+_103909961_103910022	0.468815	NKX3-1.p2	BC038128|Cd59b|333883|CD59b antigen	BC059731|Cd59b|333883|CD59b antigen
mm9_v1_chr3_+_107094147_107094232	0.464759	NKX3-1.p2	AK049873|Slc16a4|229699|solute carrier family 16 (monocarboxylic acid transporters), member 4	BC026596|Slc16a4|229699|solute carrier family 16 (monocarboxylic acid transporters), member 4	NM_146136|Slc16a4|229699|solute carrier family 16 (monocarboxylic acid transporters), member 4	AK052779|Slc16a4|229699|solute carrier family 16 (monocarboxylic acid transporters), member 4	AK136837|Slc16a4|229699|solute carrier family 16 (monocarboxylic acid transporters), member 4	AK085492|Slc16a4|229699|solute carrier family 16 (monocarboxylic acid transporters), member 4	AK045797|Slc16a4|229699|solute carrier family 16 (monocarboxylic acid transporters), member 4	BC025441|Slc16a4|229699|solute carrier family 16 (monocarboxylic acid transporters), member 4
mm9_v1_chr8_+_26960094_26960127	0.464166	NKX3-1.p2	NM_008432|Kcnu1|16532|potassium channel, subfamily U, member 1	AF039213|Kcnu1|16532|potassium channel, subfamily U, member 1
mm9_v1_chr8_-_37633134_37633136	0.4632	NKX3-1.p2	AK086364|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chrX_-_132228309_132228328	0.45716	NKX3-1.p2	BC141320|1700008I05Rik|71841|RIKEN cDNA 1700008I05 gene	BC141322|1700008I05Rik|71841|RIKEN cDNA 1700008I05 gene	AK005772|1700008I05Rik|71841|RIKEN cDNA 1700008I05 gene	NM_027952|1700008I05Rik|71841|RIKEN cDNA 1700008I05 gene
mm9_v1_chr17_-_40345499_40345553	0.455928	NKX3-1.p2	M18654|Pgk2|18663|phosphoglycerate kinase 2	BC052343|Pgk2|18663|phosphoglycerate kinase 2	AK015016|Pgk2|18663|phosphoglycerate kinase 2	AK133436|Pgk2|18663|phosphoglycerate kinase 2	BC061054|Pgk2|18663|phosphoglycerate kinase 2	NM_031190|Pgk2|18663|phosphoglycerate kinase 2
mm9_v1_chr17_+_25033425_25033488	0.454485	NKX3-1.p2	AK007399|Nme3|79059|non-metastatic cells 3, protein expressed in	NM_019730|Nme3|79059|non-metastatic cells 3, protein expressed in	AF153449|Nme3|79059|non-metastatic cells 3, protein expressed in	AF288689|Nme3|79059|non-metastatic cells 3, protein expressed in	BC028503|Nme3|79059|non-metastatic cells 3, protein expressed in	AK002525|Nme3|79059|non-metastatic cells 3, protein expressed in
mm9_v1_chr14_+_46703700_46703706	0.453224	NKX3-1.p2	AK088453|Gm1821|218963|ubiquitin pseudogene
mm9_v1_chr18_+_37656644_37656807	0.452366	NKX3-1.p2	AK029163|Pcdhb19|93890|protocadherin beta 19	AK147520|Pcdhb19|93890|protocadherin beta 19	AK160654|Pcdhb19|93890|protocadherin beta 19	NM_053144|Pcdhb19|93890|protocadherin beta 19	AK046363|Pcdhb19|93890|protocadherin beta 19	BC141290|Pcdhb19|93890|protocadherin beta 19	BC141291|Pcdhb19|93890|protocadherin beta 19	AF326312|Pcdhb19|93890|protocadherin beta 19	AY013780|Pcdhb19|93890|protocadherin beta 19
mm9_v1_chr3_-_92242684_92242702	0.448843	NKX3-1.p2	X91825|Sprr1b|20754|small proline-rich protein 1B	BC119288|Sprr1b|20754|small proline-rich protein 1B	BC119290|Sprr1b|20754|small proline-rich protein 1B	AK003398|Sprr1b|20754|small proline-rich protein 1B	AK009752|Sprr1b|20754|small proline-rich protein 1B	NM_009265|Sprr1b|20754|small proline-rich protein 1B
mm9_v1_chr16_+_91465283_91465348	0.447566	NKX3-1.p2	AK162627|A930006K02Rik|78433|RIKEN cDNA A930006K02 gene	AK038602|A930006K02Rik|78433|RIKEN cDNA A930006K02 gene
mm9_v1_chr14_+_51781934_51781934	0.447532	NKX3-1.p2	BC117776|Ear5|54159|eosinophil-associated, ribonuclease A family, member 5	NM_019398|Ear5|54159|eosinophil-associated, ribonuclease A family, member 5
mm9_v1_chr4_+_11685294_11685306	0.441418	NKX3-1.p2	AK155633|Cdh17|12557|cadherin 17	NM_019753|Cdh17|12557|cadherin 17
mm9_v1_chr13_+_27213566_27213578	0.43864	NKX3-1.p2	BC064735|Prl3d2|215028|prolactin family 3, subfamily d, member 1	AF525160|Prl3d2|215028|prolactin family 3, subfamily d, member 1	NM_172155|Prl3d2|215028|prolactin family 3, subfamily d, member 1	BC119340|Prl3d2|215028|prolactin family 3, subfamily d, member 1	BC119344|Prl3d2|215028|prolactin family 3, subfamily d, member 1
mm9_v1_chr16_-_95078278_95078296	0.436911	NKX3-1.p2	AB029502|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U51126|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	AK015481|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	NM_001025590|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6
mm9_v1_chr2_+_24132473_24132473	0.435359	NKX3-1.p2	AK014576|Il1f5|54450|interleukin 1 family, member 5 (delta)	NM_001146087|Il1f5|54450|interleukin 1 family, member 5 (delta)	NM_001146088|Il1f5|54450|interleukin 1 family, member 5 (delta)
mm9_v1_chr3_+_108374611_108374644	0.434082	NKX3-1.p2	AK007227|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK007339|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_025444|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK076595|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK160171|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC021447|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr1_+_135206360_135206408	0.434042	NKX3-1.p2	AY707855|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)	BC024448|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)	AK002581|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)	AK141378|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)	NM_026680|Golt1a|68338|golgi transport 1 homolog A (S. cerevisiae)
mm9_v1_chr12_+_10376776_10376849	0.433007	NKX3-1.p2	NM_027588|Nt5c1b|70881|5'-nucleotidase, cytosolic IB	AK014892|Nt5c1b|70881|5'-nucleotidase, cytosolic IB	BC060976|Nt5c1b|70881|5'-nucleotidase, cytosolic IB	AF356186|Nt5c1b|70881|5'-nucleotidase, cytosolic IB	AJ295253|Nt5c1b|70881|5'-nucleotidase, cytosolic IB
mm9_v1_chr9_+_92204214_92204235	0.432577	NKX3-1.p2	AK132905|1700057G04Rik|78459|RIKEN cDNA 1700057G04 gene	NM_001033184|1700057G04Rik|78459|RIKEN cDNA 1700057G04 gene	AK018865|1700057G04Rik|78459|RIKEN cDNA 1700057G04 gene
mm9_v1_chr5_-_53499398_53499436	0.43171	NKX3-1.p2	AK009811|Sel1l3|231238|sel-1 suppressor of lin-12-like 3 (C. elegans)
mm9_v1_chr8_-_3946862_3946862	0.42962	NKX3-1.p2	AF373410|Cd209c|170776|CD209c antigen	NM_130903|Cd209c|170776|CD209c antigen
mm9_v1_chr6_-_123600652_123600652	0.429521	NKX3-1.p2	NM_001104637|Vmn2r22|546913|vomeronasal 2, receptor 22
mm9_v1_chr3_-_137849636_137849676	0.426924	NKX3-1.p2	BC150693|4930579F01Rik|67741|RIKEN cDNA 4930579F01 gene	AK016318|4930579F01Rik|67741|RIKEN cDNA 4930579F01 gene	NM_001163385|4930579F01Rik|67741|RIKEN cDNA 4930579F01 gene	NM_001163386|4930579F01Rik|67741|RIKEN cDNA 4930579F01 gene
mm9_v1_chr13_-_99754519_99754519	0.425228	NKX3-1.p2	AK006311|1700024P04Rik|69382|RIKEN cDNA 1700024P04 gene	NM_027064|1700024P04Rik|69382|RIKEN cDNA 1700024P04 gene
mm9_v1_chr9_+_54442900_54442929	0.421966	NKX3-1.p2	AK003393|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK146717|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha
mm9_v1_chr4_-_102699296_102699446	0.418228	NKX3-1.p2	AF054843|Insl5|23919|insulin-like 5	BC010968|Insl5|23919|insulin-like 5	AF076971|Insl5|23919|insulin-like 5	AF133817|Insl5|23919|insulin-like 5	NM_011831|Insl5|23919|insulin-like 5	AF054842|Insl5|23919|insulin-like 5
mm9_v1_chr11_+_73883671_73883671	0.410978	NKX3-1.p2	BC083001|Zfp616|327963|zinc finger protein 616	NM_001177570|Zfp616|327963|zinc finger protein 616
mm9_v1_chr5_-_108298126_108298186	0.410337	NKX3-1.p2	AK134294|Evi5|14020|ecotropic viral integration site 5	AK162905|Evi5|14020|ecotropic viral integration site 5
mm9_v1_chr8_-_38001686_38001686	0.409056	NKX3-1.p2	HM008381|Dlc1|50768|deleted in liver cancer 1	NM_001194940|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chrX_-_89028314_89028356	0.407493	NKX3-1.p2	BC116773|Mageb5|74271|melanoma antigen, family B, 5	BC116775|Mageb5|74271|melanoma antigen, family B, 5	NM_028847|Mageb5|74271|melanoma antigen, family B, 5	AK006807|Mageb5|74271|melanoma antigen, family B, 5
mm9_v1_chr11_-_109957250_109957250	0.406216	NKX3-1.p2	NM_153145|Abca8a|217258|ATP-binding cassette, sub-family A (ABC1), member 8a
mm9_v1_chr17_+_26852581_26852657	0.403568	NKX3-1.p2	AK030092|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	NM_029870|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK044760|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK020796|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132423|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132454|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene
mm9_v1_chr6_-_135204232_135204353	0.403307	NKX3-1.p2	D87325|Gsg1|14840|germ cell-specific gene 1	NM_001080553|Gsg1|14840|germ cell-specific gene 1	NM_010352|Gsg1|14840|germ cell-specific gene 1
mm9_v1_chr11_+_95122842_95123008	0.402295	NKX3-1.p2	AF235035|Tac4|93670|tachykinin 4	NM_053093|Tac4|93670|tachykinin 4	BC119426|Tac4|93670|tachykinin 4	AF515827|Tac4|93670|tachykinin 4
mm9_v1_chr3_+_81736518_81736645	0.402277	NKX3-1.p2	AK143683|Ctso|229445|cathepsin O	AK034490|Ctso|229445|cathepsin O	NM_177662|Ctso|229445|cathepsin O	AK020735|Ctso|229445|cathepsin O	AK040071|Ctso|229445|cathepsin O	AK049470|Ctso|229445|cathepsin O	AK166103|Ctso|229445|cathepsin O	BC098219|Ctso|229445|cathepsin O	AK165930|Ctso|229445|cathepsin O	BC044664|Ctso|229445|cathepsin O
mm9_v1_chr2_+_162762650_162762674	0.396983	NKX3-1.p2	
mm9_v1_chr12_+_78339071_78339134	0.396883	NKX3-1.p2	BC010666|Fut8|53618|fucosyltransferase 8	AK051811|Fut8|53618|fucosyltransferase 8
mm9_v1_chr8_+_112017926_112017974	0.393168	NKX3-1.p2	AB029919|Pmfbp1|56523|polyamine modulated factor 1 binding protein 1	NM_019938|Pmfbp1|56523|polyamine modulated factor 1 binding protein 1	BC138245|Pmfbp1|56523|polyamine modulated factor 1 binding protein 1	BC138246|Pmfbp1|56523|polyamine modulated factor 1 binding protein 1
mm9_v1_chr16_-_84955086_84955166	0.386793	NKX3-1.p2	AK190928|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr11_+_43534658_43534687	0.386553	NKX3-1.p2	AK086604|Pwwp2a|70802|PWWP domain containing 2A	AK039984|Pwwp2a|70802|PWWP domain containing 2A
mm9_v1_chr10_-_127444563_127444662	0.382502	NKX3-1.p2	BC021836|Hsd17b6|27400|hydroxysteroid (17-beta) dehydrogenase 6	NM_013786|Hsd17b6|27400|hydroxysteroid (17-beta) dehydrogenase 6	AK008212|Hsd17b6|27400|hydroxysteroid (17-beta) dehydrogenase 6
mm9_v1_chr1_-_155698278_155698324	0.381673	NKX3-1.p2	BC120491|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	BC131905|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	AJ554213|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	AK136655|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	AK136685|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	DQ402363|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	NM_178243|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene
mm9_v1_chr7_-_49314350_49314350	0.381479	NKX3-1.p2	NM_001105056|Vmn2r59|628444|vomeronasal 2, receptor 59
mm9_v1_chr7_+_128061257_128061281	0.381282	NKX3-1.p2	AK005034|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	NM_001164096|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	NM_025298|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr3_-_127483385_127483450	0.380598	NKX3-1.p2	AK018401|Alpk1|71481|alpha-kinase 1	AK041315|Alpk1|71481|alpha-kinase 1	AK173191|Alpk1|71481|alpha-kinase 1	NM_027808|Alpk1|71481|alpha-kinase 1
mm9_v1_chr2_-_148676641_148676677	0.378486	NKX3-1.p2	BC104302|9230104L09Rik|77705|RIKEN cDNA 9230104L09 gene	BC104303|9230104L09Rik|77705|RIKEN cDNA 9230104L09 gene	AK020314|9230104L09Rik|77705|RIKEN cDNA 9230104L09 gene	NM_029960|9230104L09Rik|77705|RIKEN cDNA 9230104L09 gene
mm9_v1_chrX_-_3243543_3243628	0.377811	NKX3-1.p2	NM_001099643|Gm3750|100042254|predicted gene 3750	AB055855|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AB055856|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	BC115962|Gm2933|100040732|predicted gene 2933	AB055854|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	AK006065|Gmcl1l|71847|germ cell-less homolog 1 (Drosophila)-like	NM_001085545|Gm14345|630022|predicted gene 14345	NM_001085551|Gm14346|668958|predicted gene 14346	NM_001085552|Gm14351|668960|predicted gene 14351
mm9_v1_chr3_+_92143061_92143080	0.37778	NKX3-1.p2	AK008778|Sprr2d|20758|small proline-rich protein 2D	AY158988|Sprr2d|20758|small proline-rich protein 2D	NM_011470|Sprr2d|20758|small proline-rich protein 2D	AJ005562|Sprr2d|20758|small proline-rich protein 2D	BC111436|Sprr2d|20758|small proline-rich protein 2D
mm9_v1_chr2_+_43604343_43604389	0.376215	NKX3-1.p2	AK036520|Arhgap15|76117|Rho GTPase activating protein 15	NM_153820|Arhgap15|76117|Rho GTPase activating protein 15	AK170537|Arhgap15|76117|Rho GTPase activating protein 15	NM_001025377|Arhgap15|76117|Rho GTPase activating protein 15	AK041323|Arhgap15|76117|Rho GTPase activating protein 15	AK033620|Arhgap15|76117|Rho GTPase activating protein 15	AK040796|Arhgap15|76117|Rho GTPase activating protein 15	AK172407|Arhgap15|76117|Rho GTPase activating protein 15	BC034881|Arhgap15|76117|Rho GTPase activating protein 15	AK018058|Arhgap15|76117|Rho GTPase activating protein 15	AK031022|Arhgap15|76117|Rho GTPase activating protein 15	BC024887|Arhgap15|76117|Rho GTPase activating protein 15
mm9_v1_chr5_+_118426721_118426771	0.375502	NKX3-1.p2	BC021871|Fbxo21|231670|F-box protein 21
mm9_v1_chr18_-_36926866_36926900	0.374423	NKX3-1.p2	
mm9_v1_chr4_+_11685359_11685407	0.372059	NKX3-1.p2	D87912|Cdh17|12557|cadherin 17	AK171733|Cdh17|12557|cadherin 17	BC042891|Cdh17|12557|cadherin 17	AF177669|Cdh17|12557|cadherin 17
mm9_v1_chr5_+_118426774_118426787	0.371496	NKX3-1.p2	AK049723|Fbxo21|231670|F-box protein 21	NM_145564|Fbxo21|231670|F-box protein 21	AK076521|Fbxo21|231670|F-box protein 21
mm9_v1_chr6_-_53928655_53928666	0.370808	NKX3-1.p2	BC137839|Cpvl|71287|carboxypeptidase, vitellogenic-like	BC144966|Cpvl|71287|carboxypeptidase, vitellogenic-like	NM_027749|Cpvl|71287|carboxypeptidase, vitellogenic-like	AK017087|Cpvl|71287|carboxypeptidase, vitellogenic-like
mm9_v1_chr5_+_134659874_134659999	0.367457	NKX3-1.p2	AK082488|Gtf2ird2|114674|GTF2I repeat domain containing 2	AY116023|Gtf2ird2|114674|GTF2I repeat domain containing 2	AK081801|Gtf2ird2|114674|GTF2I repeat domain containing 2	BC057179|Gtf2ird2|114674|GTF2I repeat domain containing 2	AY014963|Gtf2ird2|114674|GTF2I repeat domain containing 2	NM_053266|Gtf2ird2|114674|GTF2I repeat domain containing 2	BC132157|Gtf2ird2|114674|GTF2I repeat domain containing 2	BC132159|Gtf2ird2|114674|GTF2I repeat domain containing 2
mm9_v1_chr19_-_7877065_7877081	0.365109	NKX3-1.p2	AJ132857|BC014805|236149|cDNA sequence BC014805
mm9_v1_chr1_+_19198994_19199078	0.364861	NKX3-1.p2	AK017373|Tcfap2b|21419|transcription factor AP-2 beta	NM_009334|Tcfap2b|21419|transcription factor AP-2 beta	AK005128|Tcfap2b|21419|transcription factor AP-2 beta	AK028906|Tcfap2b|21419|transcription factor AP-2 beta	X78197|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr11_+_22913386_22913386	0.364199	NKX3-1.p2	BC026495|Fam161a|73873|family with sequence similarity 161, member A	NM_028672|Fam161a|73873|family with sequence similarity 161, member A
mm9_v1_chr3_+_59835700_59835727	0.363101	NKX3-1.p2	NM_023383|Aadac|67758|arylacetamide deacetylase (esterase)	AK008244|Aadac|67758|arylacetamide deacetylase (esterase)	BC054823|Aadac|67758|arylacetamide deacetylase (esterase)	BC019999|Aadac|67758|arylacetamide deacetylase (esterase)
mm9_v1_chr19_-_11271212_11271226	0.362096	NKX3-1.p2	BC089483|Ms4a13|73466|membrane-spanning 4-domains, subfamily A, member 13	NM_198224|Ms4a13|73466|membrane-spanning 4-domains, subfamily A, member 13	AF544402|Ms4a13|73466|membrane-spanning 4-domains, subfamily A, member 13	AK006841|Ms4a13|73466|membrane-spanning 4-domains, subfamily A, member 13
mm9_v1_chr14_-_56793432_56793435	0.360242	NKX3-1.p2	NM_153052|Gzmn|245839|granzyme N	AB049454|Gzmn|245839|granzyme N	AB100426|Gzmn|245839|granzyme N
mm9_v1_chr6_+_73221007_73221091	0.352845	NKX3-1.p2	AK204482|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit
mm9_v1_chr11_-_58266424_58266467	0.346319	NKX3-1.p2	AK076838|4930504O13Rik|403200|RIKEN cDNA 4930504O13 gene	BC048595|4930504O13Rik|403200|RIKEN cDNA 4930504O13 gene	NM_207527|4930504O13Rik|403200|RIKEN cDNA 4930504O13 gene
mm9_v1_chr17_+_18222020_18222020	0.34378	NKX3-1.p2	NM_001104540|Vmn2r91|665210|vomeronasal 2, receptor 91
mm9_v1_chr2_-_70856430_70856434	0.342715	NKX3-1.p2	NM_001110512|Mettl8|228019|methyltransferase like 8	DQ230973|Mettl8|228019|methyltransferase like 8	DQ230974|Mettl8|228019|methyltransferase like 8
mm9_v1_chr2_-_155979971_155980032	0.342223	NKX3-1.p2	AK046526|Rbm39|170791|RNA binding motif protein 39
mm9_v1_chr6_-_129863199_129863241	0.338926	NKX3-1.p2	BC120550|Klra5|16636|killer cell lectin-like receptor, subfamily A, member 5	BC137708|Klra5|16636|killer cell lectin-like receptor, subfamily A, member 5	AF247643|Klra5|16636|killer cell lectin-like receptor, subfamily A, member 5	NM_008463|Klra5|16636|killer cell lectin-like receptor, subfamily A, member 5	U10091|Klra5|16636|killer cell lectin-like receptor, subfamily A, member 5
mm9_v1_chr4_-_106979732_106979773	0.338282	NKX3-1.p2	AK002549|Dio1|13370|deiodinase, iodothyronine, type I	BC089608|Dio1|13370|deiodinase, iodothyronine, type I	NM_007860|Dio1|13370|deiodinase, iodothyronine, type I	U49861|Dio1|13370|deiodinase, iodothyronine, type I	BC019786|Dio1|13370|deiodinase, iodothyronine, type I	BC037080|Dio1|13370|deiodinase, iodothyronine, type I
mm9_v1_chr7_+_52769075_52769124	0.337789	NKX3-1.p2	NM_001045555|Tulp2|56734|tubby-like protein 2	NM_008807|Tulp2|56734|tubby-like protein 2	AK077200|Tulp2|56734|tubby-like protein 2	AF105712|Tulp2|56734|tubby-like protein 2
mm9_v1_chr19_-_11205360_11205367	0.336019	NKX3-1.p2	AK006056|1700017D01Rik|69369|RIKEN cDNA 1700017D01 gene	NM_027058|1700017D01Rik|69369|RIKEN cDNA 1700017D01 gene
mm9_v1_chr4_-_63522069_63522317	0.333626	NKX3-1.p2	AK157270|Tnfsf8|21949|tumor necrosis factor (ligand) superfamily, member 8	L09754|Tnfsf8|21949|tumor necrosis factor (ligand) superfamily, member 8	BC117093|Tnfsf8|21949|tumor necrosis factor (ligand) superfamily, member 8	BC117097|Tnfsf8|21949|tumor necrosis factor (ligand) superfamily, member 8	AK030916|Tnfsf8|21949|tumor necrosis factor (ligand) superfamily, member 8	NM_009403|Tnfsf8|21949|tumor necrosis factor (ligand) superfamily, member 8
mm9_v1_chr4_+_115236321_115236321	0.331171	NKX3-1.p2	NM_201640|Cyp4a31|666168|cytochrome P450, family 4, subfamily a, polypeptide 31
mm9_v1_chr7_-_133643662_133643692	0.33091	NKX3-1.p2	BC043451|Atxn2l|233871|ataxin 2-like
mm9_v1_chr11_+_73502279_73502349	0.330121	NKX3-1.p2	AK145370|Zfp735|76390|zinc finger protein 735	NM_001126489|Zfp735|76390|zinc finger protein 735	BC137974|Zfp735|76390|zinc finger protein 735
mm9_v1_chr7_-_115210309_115210309	0.329644	NKX3-1.p2	NM_020291|Olfr480|56861|olfactory receptor 480
mm9_v1_chr3_+_101266000_101266048	0.327092	NKX3-1.p2	AK012857|Igsf3|78908|immunoglobulin superfamily, member 3
mm9_v1_chr5_+_21049368_21049436	0.326195	NKX3-1.p2	AK014767|Lrrc17|74511|leucine rich repeat containing 17	AK018071|Lrrc17|74511|leucine rich repeat containing 17	BC030317|Lrrc17|74511|leucine rich repeat containing 17
mm9_v1_chr2_+_122012007_122012007	0.325794	NKX3-1.p2	AK016695|4933406J08Rik|74401|RIKEN cDNA 4933406J08 gene	NM_028914|4933406J08Rik|74401|RIKEN cDNA 4933406J08 gene
mm9_v1_chr15_-_8273428_8273486	0.325235	NKX3-1.p2	AK135347|Nipbl|71175|Nipped-B homolog (Drosophila)
mm9_v1_chr7_+_97177668_97177676	0.322385	NKX3-1.p2	AK165252|E230029C05Rik|319711|RIKEN cDNA E230029C05 gene	AK157435|E230029C05Rik|319711|RIKEN cDNA E230029C05 gene	AK046045|E230029C05Rik|319711|RIKEN cDNA E230029C05 gene
mm9_v1_chr5_+_117827904_117828056	0.321776	NKX3-1.p2	AK195234|Wsb2|59043|WD repeat and SOCS box-containing 2	AK198504|Wsb2|59043|WD repeat and SOCS box-containing 2	AK206996|Wsb2|59043|WD repeat and SOCS box-containing 2	AK210681|Wsb2|59043|WD repeat and SOCS box-containing 2
mm9_v1_chr9_+_78039786_78039851	0.31604	NKX3-1.p2	AK008400|Gsta4|14860|glutathione S-transferase, alpha 4	AK008189|Gsta4|14860|glutathione S-transferase, alpha 4	AK011841|Gsta4|14860|glutathione S-transferase, alpha 4	AK019271|Gsta4|14860|glutathione S-transferase, alpha 4	AK009668|Gsta4|14860|glutathione S-transferase, alpha 4	AK010098|Gsta4|14860|glutathione S-transferase, alpha 4	AK008193|Gsta4|14860|glutathione S-transferase, alpha 4	AK008490|Gsta4|14860|glutathione S-transferase, alpha 4	AK011177|Gsta4|14860|glutathione S-transferase, alpha 4	BC012639|Gsta4|14860|glutathione S-transferase, alpha 4	L06047|Gsta4|14860|glutathione S-transferase, alpha 4
mm9_v1_chr14_-_73924950_73925048	0.314622	NKX3-1.p2	AK043196|Nudt15|214254|nudix (nucleoside diphosphate linked moiety X)-type motif 15	AK168451|Nudt15|214254|nudix (nucleoside diphosphate linked moiety X)-type motif 15	BC060962|Nudt15|214254|nudix (nucleoside diphosphate linked moiety X)-type motif 15	AK032657|Nudt15|214254|nudix (nucleoside diphosphate linked moiety X)-type motif 15
mm9_v1_chr18_+_63112372_63112770	0.314506	NKX3-1.p2	AK190259|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK191643|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK191811|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK191857|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK192996|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK198042|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK214514|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AB023957|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	BC065780|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1
mm9_v1_chr2_-_91516101_91516113	0.312849	NKX3-1.p2	BC024457|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)
mm9_v1_chr11_-_96168185_96168223	0.311789	NKX3-1.p2	AK002860|0610040B09Rik|75395|RIKEN cDNA 0610040B09 gene
mm9_v1_chr10_-_61885155_61885204	0.309791	NKX3-1.p2	AK044665|Hkdc1|216019|hexokinase domain containing 1	AK145980|Hkdc1|216019|hexokinase domain containing 1	BC016235|Hkdc1|216019|hexokinase domain containing 1	NM_145419|Hkdc1|216019|hexokinase domain containing 1
mm9_v1_chrY_-_582062_582201	0.309061	NKX3-1.p2	AK162410|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK220463|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK155922|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AF057367|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	BC053061|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK043154|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	NM_009484|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK142344|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK142512|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome
mm9_v1_chr4_-_88238283_88238288	0.30771	NKX3-1.p2	BC117775|Ifna9|15972|interferon alpha 9	BC117774|Ifna6|15969|interferon alpha 6	NM_010507|Ifna9|15972|interferon alpha 9
mm9_v1_chr2_-_35973217_35973333	0.306339	NKX3-1.p2	
mm9_v1_chr8_+_28153059_28153137	0.303732	NKX3-1.p2	AK049905|Prosc|114863|proline synthetase co-transcribed	BC047992|Prosc|114863|proline synthetase co-transcribed	AK160172|Prosc|114863|proline synthetase co-transcribed	AK032308|Prosc|114863|proline synthetase co-transcribed	AK134549|Prosc|114863|proline synthetase co-transcribed	AK191605|Prosc|114863|proline synthetase co-transcribed	AK203439|Prosc|114863|proline synthetase co-transcribed
mm9_v1_chr19_-_7877136_7877156	0.30234	NKX3-1.p2	BC014805|BC014805|236149|cDNA sequence BC014805	NM_146232|BC014805|236149|cDNA sequence BC014805
mm9_v1_chr9_-_39066263_39066264	0.30119	NKX3-1.p2	NM_146506|Olfr945|258499|olfactory receptor 945	BC128004|Olfr945|258499|olfactory receptor 945
mm9_v1_chr3_-_63941401_63941401	0.300763	NKX3-1.p2	NM_001104592|Vmn2r2|100125586|vomeronasal 2, receptor 2
mm9_v1_chr12_-_30817451_30817473	0.298964	NKX3-1.p2	AK047843|Tpo|22018|thyroid peroxidase	NM_009417|Tpo|22018|thyroid peroxidase	X60703|Tpo|22018|thyroid peroxidase
mm9_v1_chr4_-_115742546_115742551	0.296456	NKX3-1.p2	AK028137|Uqcrh|66576|ubiquinol-cytochrome c reductase hinge protein
mm9_v1_chr9_+_21760196_21760229	0.296374	NKX3-1.p2	NM_025870|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	BC150493|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	AK009864|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	BC019749|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	AK043948|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene
mm9_v1_chr18_+_38456280_38456312	0.295718	NKX3-1.p2	NM_001164622|Rnf14|56736|ring finger protein 14	NM_020012|Rnf14|56736|ring finger protein 14
mm9_v1_chrX_+_130722039_130722141	0.295448	NKX3-1.p2	AK016872|Arl13a|74448|ADP-ribosylation factor-like 13A	NM_028947|Arl13a|74448|ADP-ribosylation factor-like 13A	BC100522|Arl13a|74448|ADP-ribosylation factor-like 13A
mm9_v1_chr4_+_88487719_88487764	0.294184	NKX3-1.p2	BC119349|Ifna4|15967|interferon alpha 4	BC119351|Ifna4|15967|interferon alpha 4	NM_010504|Ifna4|15967|interferon alpha 4	BC116217|Ifna4|15967|interferon alpha 4
mm9_v1_chrX_+_160578411_160578593	0.292909	NKX3-1.p2	AB053181|Ace2|70008|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	AB053182|Ace2|70008|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	NM_027286|Ace2|70008|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	BC026801|Ace2|70008|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	AK141604|Ace2|70008|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	GQ262785|Ace2|70008|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
mm9_v1_chr1_-_162133574_162133640	0.29062	NKX3-1.p2	AK164472|Cacybp|12301|calcyclin binding protein
mm9_v1_chr17_-_31281184_31281204	0.290136	NKX3-1.p2	BC050086|Tff2|21785|trefoil factor 2 (spasmolytic protein 1)	X51697|Tff2|21785|trefoil factor 2 (spasmolytic protein 1)	BC087889|Tff2|21785|trefoil factor 2 (spasmolytic protein 1)
mm9_v1_chr1_+_176102903_176103041	0.289466	NKX3-1.p2	NM_011465|Spna1|20739|spectrin alpha 1	AK142860|Spna1|20739|spectrin alpha 1	U87455|Spna1|20739|spectrin alpha 1	AF093576|Spna1|20739|spectrin alpha 1	BC150747|Spna1|20739|spectrin alpha 1
mm9_v1_chr16_-_4679664_4679776	0.285715	NKX3-1.p2	AK143624|Coro7|78885|coronin 7	AK018739|Coro7|78885|coronin 7	AK088155|Coro7|78885|coronin 7	AK041000|Coro7|78885|coronin 7	AK037894|Coro7|78885|coronin 7	BC061006|Coro7|78885|coronin 7	NM_030205|Coro7|78885|coronin 7	AK040408|Coro7|78885|coronin 7	AK150051|Coro7|78885|coronin 7	AK039585|Coro7|78885|coronin 7
mm9_v1_chr15_+_10994444_10994583	0.285412	NKX3-1.p2	AK145096|Adamts12|239337|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12	AK135354|Adamts12|239337|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12	NM_175501|Adamts12|239337|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12	AK054015|Adamts12|239337|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12	AK048612|Adamts12|239337|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12
mm9_v1_chr14_-_69273768_69273898	0.285222	NKX3-1.p2	BC058782|Adam28|13522|a disintegrin and metallopeptidase domain 28	AF153350|Adam28|13522|a disintegrin and metallopeptidase domain 28	AK052479|Adam28|13522|a disintegrin and metallopeptidase domain 28	AK036800|Adam28|13522|a disintegrin and metallopeptidase domain 28	AK081736|Adam28|13522|a disintegrin and metallopeptidase domain 28	AF163293|Adam28|13522|a disintegrin and metallopeptidase domain 28	AF163290|Adam28|13522|a disintegrin and metallopeptidase domain 28	AF163291|Adam28|13522|a disintegrin and metallopeptidase domain 28	AF163292|Adam28|13522|a disintegrin and metallopeptidase domain 28	NM_001048175|Adam28|13522|a disintegrin and metallopeptidase domain 28	NM_010082|Adam28|13522|a disintegrin and metallopeptidase domain 28	NM_183366|Adam28|13522|a disintegrin and metallopeptidase domain 28
mm9_v1_chr17_+_28667805_28667828	0.279825	NKX3-1.p2	AK015756|4930511I11Rik|67645|RIKEN cDNA 4930511I11 gene	NM_026290|4930511I11Rik|67645|RIKEN cDNA 4930511I11 gene	BC049559|4930511I11Rik|67645|RIKEN cDNA 4930511I11 gene	AK005672|4930511I11Rik|67645|RIKEN cDNA 4930511I11 gene	EU477370|4930511I11Rik|67645|RIKEN cDNA 4930511I11 gene
mm9_v1_chr10_+_57365674_57365674	0.279273	NKX3-1.p2	BC061162|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039052|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039053|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific
mm9_v1_chr4_-_120861138_120861138	0.277717	NKX3-1.p2	NM_001081013|Rlf|109263|rearranged L-myc fusion sequence
mm9_v1_chr3_+_88769733_88769733	0.277402	NKX3-1.p2	NM_138679|Ash1l|192195|ash1 (absent, small, or homeotic)-like (Drosophila)
mm9_v1_chrM_+_13320_13486	0.276878	NKX3-1.p2	
mm9_v1_chr16_-_84831712_84831743	0.273475	NKX3-1.p2	U77128|Atp5j|11957|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
mm9_v1_chr5_-_92792262_92792321	0.270801	NKX3-1.p2	AK040051|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	BC025903|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	AF136449|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	AF178672|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	AF179872|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	NM_019494|Cxcl11|56066|chemokine (C-X-C motif) ligand 11	AK020750|Cxcl11|56066|chemokine (C-X-C motif) ligand 11
mm9_v1_chr13_+_54203236_54203344	0.27002	NKX3-1.p2	AK048238|Sfxn1|14057|sideroflexin 1
mm9_v1_chr7_+_135409196_135409210	0.266888	NKX3-1.p2	AK128900|Slc5a2|246787|solute carrier family 5 (sodium/glucose cotransporter), member 2	AY033886|Slc5a2|246787|solute carrier family 5 (sodium/glucose cotransporter), member 2	BC022226|Slc5a2|246787|solute carrier family 5 (sodium/glucose cotransporter), member 2	NM_133254|Slc5a2|246787|solute carrier family 5 (sodium/glucose cotransporter), member 2
mm9_v1_chr7_-_110940343_110940343	0.265982	NKX3-1.p2	NM_013619|Olfr67|18368|olfactory receptor 67
mm9_v1_chr8_+_23069185_23069185	0.265302	NKX3-1.p2	AK135805|C86695|97476|expressed sequence C86695	NM_001081662|C86695|97476|expressed sequence C86695
mm9_v1_chr6_-_129572590_129572688	0.264529	NKX3-1.p2	AY860972|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1	CT010384|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1	AF039026|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1	BC057147|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1	AK040436|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1	NM_033078|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1
mm9_v1_chr17_-_80689815_80689815	0.263876	NKX3-1.p2	BC062952|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	NM_001163759|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	NM_198942|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
mm9_v1_chr19_+_39361574_39361600	0.262567	NKX3-1.p2	NM_007815|Cyp2c29|13095|cytochrome P450, family 2, subfamily c, polypeptide 29	BC019908|Cyp2c29|13095|cytochrome P450, family 2, subfamily c, polypeptide 29	D17674|Cyp2c29|13095|cytochrome P450, family 2, subfamily c, polypeptide 29
mm9_v1_chr4_-_46417054_46417104	0.261884	NKX3-1.p2	AF269248|Hemgn|93966|hemogen	NM_053149|Hemgn|93966|hemogen	AK171906|Hemgn|93966|hemogen
mm9_v1_chr18_+_44264117_44264290	0.261216	NKX3-1.p2	DQ437332|Spink12|78242|serine peptidase inhibitor, Kazal type 11	AK136616|Spink12|78242|serine peptidase inhibitor, Kazal type 11	NM_030061|Spink12|78242|serine peptidase inhibitor, Kazal type 11	AK020352|Spink12|78242|serine peptidase inhibitor, Kazal type 11	BC145914|Spink12|78242|serine peptidase inhibitor, Kazal type 11	BC145916|Spink12|78242|serine peptidase inhibitor, Kazal type 11
mm9_v1_chr7_-_137410321_137410321	0.260814	NKX3-1.p2	NM_010207|Fgfr2|14183|fibroblast growth factor receptor 2	NM_201601|Fgfr2|14183|fibroblast growth factor receptor 2
mm9_v1_chr7_-_15031917_15031936	0.260452	NKX3-1.p2	EU486167|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	AK041070|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	NM_175250|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	EU486166|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene
mm9_v1_chr16_-_17722915_17723043	0.25979	NKX3-1.p2	AF328770|Med15|94112|mediator complex subunit 15	AK131186|Med15|94112|mediator complex subunit 15	AK171628|Med15|94112|mediator complex subunit 15	BC054779|Med15|94112|mediator complex subunit 15	AK166522|Med15|94112|mediator complex subunit 15	AK038915|Med15|94112|mediator complex subunit 15	AK052231|Med15|94112|mediator complex subunit 15	AK142224|Med15|94112|mediator complex subunit 15	NM_001040683|Med15|94112|mediator complex subunit 15	NM_033609|Med15|94112|mediator complex subunit 15	AK169904|Med15|94112|mediator complex subunit 15
mm9_v1_chr9_-_50363242_50363242	0.259662	NKX3-1.p2	NM_133217|Bco2|170752|beta-carotene oxygenase 2
mm9_v1_chr11_+_78006893_78006893	0.258542	NKX3-1.p2	AK160258|Proca1|216974|protein interacting with cyclin A1	NM_001045516|Proca1|216974|protein interacting with cyclin A1
mm9_v1_chr9_+_75623899_75624064	0.255291	NKX3-1.p2	L41145|Bmp5|12160|bone morphogenetic protein 5	BC100751|Bmp5|12160|bone morphogenetic protein 5	BC100752|Bmp5|12160|bone morphogenetic protein 5	BC100753|Bmp5|12160|bone morphogenetic protein 5	BC100754|Bmp5|12160|bone morphogenetic protein 5	AK160412|Bmp5|12160|bone morphogenetic protein 5
mm9_v1_chr16_-_98169926_98169967	0.255084	NKX3-1.p2	AK017406|Zfp295|114565|zinc finger protein 295	AK084920|Zfp295|114565|zinc finger protein 295
mm9_v1_chr3_+_93246251_93246251	0.253631	NKX3-1.p2	NM_001163098|Tchh|99681|trichohyalin
mm9_v1_chr2_-_85488475_85488475	0.253506	NKX3-1.p2	NM_146573|Olfr1002|258566|olfactory receptor 1002
mm9_v1_chr4_-_128639595_128639690	0.250339	NKX3-1.p2	BC138973|Adc|242669|arginine decarboxylase	BC138974|Adc|242669|arginine decarboxylase	NM_172875|Adc|242669|arginine decarboxylase	BC065772|Adc|242669|arginine decarboxylase	BC028775|Adc|242669|arginine decarboxylase	AK047522|Adc|242669|arginine decarboxylase	AK077201|Adc|242669|arginine decarboxylase	AK080568|Adc|242669|arginine decarboxylase	AK154564|Adc|242669|arginine decarboxylase	AK148717|Adc|242669|arginine decarboxylase
mm9_v1_chr1_+_175603760_175603841	0.248923	NKX3-1.p2	AK041099|Pydc3|100033459|pyrin domain containing 3	NM_001162938|Pydc3|100033459|pyrin domain containing 3
mm9_v1_chr3_-_92556257_92556262	0.248384	NKX3-1.p2	AK003795|Lce1g|66195|late cornified envelope 1G	AK004290|Lce1g|66195|late cornified envelope 1G	NM_025413|Lce1g|66195|late cornified envelope 1G
mm9_v1_chr9_-_48148740_48148980	0.248371	NKX3-1.p2	AK162300|Fam55b|78252|family with sequence similarity 55, member B	AK033667|Fam55b|78252|family with sequence similarity 55, member B	AK136668|Fam55b|78252|family with sequence similarity 55, member B	BC140955|Fam55b|78252|family with sequence similarity 55, member B	AK019469|Fam55b|78252|family with sequence similarity 55, member B	AK165213|Fam55b|78252|family with sequence similarity 55, member B	AK157096|Fam55b|78252|family with sequence similarity 55, member B	AK165372|Fam55b|78252|family with sequence similarity 55, member B	NM_030069|Fam55b|78252|family with sequence similarity 55, member B
mm9_v1_chr10_-_51915049_51915049	0.24807	NKX3-1.p2	NM_011282|Ros1|19886|Ros1 proto-oncogene	U15443|Ros1|19886|Ros1 proto-oncogene
mm9_v1_chr2_+_152398479_152398479	0.247691	NKX3-1.p2	AK076875|Defb21|403172|defensin beta 21	DQ012032|Defb21|403172|defensin beta 21	NM_207276|Defb21|403172|defensin beta 21
mm9_v1_chr2_-_32630929_32631152	0.247216	NKX3-1.p2	AK133273|Ttc16|338348|tetratricopeptide repeat domain 16	AK164721|Ttc16|338348|tetratricopeptide repeat domain 16	AK089384|Ttc16|338348|tetratricopeptide repeat domain 16
mm9_v1_chr12_+_53800302_53800317	0.246571	NKX3-1.p2	DQ233645|Akap6|238161|A kinase (PRKA) anchor protein 6
mm9_v1_chr2_+_84828352_84828371	0.245472	NKX3-1.p2	AK158110|Prg3|53856|proteoglycan 3	AF202533|Prg3|53856|proteoglycan 3	NM_016914|Prg3|53856|proteoglycan 3
mm9_v1_chr9_+_106402297_106402322	0.24288	NKX3-1.p2	NM_001146701|Iqcf1|74267|IQ motif containing F1	NM_028843|Iqcf1|74267|IQ motif containing F1	BC049769|Iqcf1|74267|IQ motif containing F1	AK006797|Iqcf1|74267|IQ motif containing F1
mm9_v1_chr16_-_88627910_88627910	0.242615	NKX3-1.p2	AK010217|2310079G19Rik|69699|RIKEN cDNA 2310079G19 gene	NM_027173|2310079G19Rik|69699|RIKEN cDNA 2310079G19 gene
mm9_v1_chr7_+_17307277_17307306	0.242315	NKX3-1.p2	L49180|Ceacam9|26368|carcinoembryonic antigen-related cell adhesion molecule 9	NM_011927|Ceacam9|26368|carcinoembryonic antigen-related cell adhesion molecule 9	AK049543|Ceacam9|26368|carcinoembryonic antigen-related cell adhesion molecule 9
mm9_v1_chr5_-_93612121_93612133	0.238715	NKX3-1.p2	AK177612|Ccni|12453|cyclin I	AK198604|Ccni|12453|cyclin I
mm9_v1_chr3_-_92491103_92491133	0.236508	NKX3-1.p2	BC060282|Lce1d|69611|late cornified envelope 1D	BC145864|Lce1d|69611|late cornified envelope 1D	BC145866|Lce1d|69611|late cornified envelope 1D	AK009666|Lce1d|69611|late cornified envelope 1D	NM_027137|Lce1d|69611|late cornified envelope 1D
mm9_v1_chr1_+_132916420_132916446	0.233755	NKX3-1.p2	AK152344|Il10|16153|interleukin 10	NM_010548|Il10|16153|interleukin 10	M37897|Il10|16153|interleukin 10	BC120612|Il10|16153|interleukin 10	BC137844|Il10|16153|interleukin 10
mm9_v1_chr7_+_28018002_28018114	0.233369	NKX3-1.p2	NM_133770|Adck4|76889|aarF domain containing kinase 4	AK002619|Adck4|76889|aarF domain containing kinase 4
mm9_v1_chr3_-_115832278_115832299	0.229892	NKX3-1.p2	CT010373|Vcam1|22329|vascular cell adhesion molecule 1	X67783|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chr6_-_40949477_40949477	0.229463	NKX3-1.p2	NM_001102660|Gm2663|100040208|predicted gene 2663
mm9_v1_chr3_+_92236503_92236517	0.229286	NKX3-1.p2	AY158995|Sprr2k|20765|small proline-rich protein 2K	NM_011477|Sprr2k|20765|small proline-rich protein 2K	BC116866|Sprr2k|20765|small proline-rich protein 2K	BC116868|Sprr2k|20765|small proline-rich protein 2K
mm9_v1_chr16_+_13265171_13265171	0.228913	NKX3-1.p2	BC028459|Mkl2|239719|MKL/myocardin-like 2	NM_181860|Mkl2|239719|MKL/myocardin-like 2
mm9_v1_chr10_+_128143313_128143342	0.228077	NKX3-1.p2	AK012808|Pmel|20431|premelanosome protein	AK131956|Pmel|20431|premelanosome protein	NM_021882|Pmel|20431|premelanosome protein	BC075667|Pmel|20431|premelanosome protein	BC082555|Pmel|20431|premelanosome protein	U14133|Pmel|20431|premelanosome protein
mm9_v1_chr6_+_56985906_56985906	0.225679	NKX3-1.p2	AF394951|Vmn1r8|171205|vomeronasal 1 receptor 8	NM_134187|Vmn1r8|171205|vomeronasal 1 receptor 8
mm9_v1_chr8_+_11840520_11840520	0.225634	NKX3-1.p2	AK006092|1700018L24Rik|75528|RIKEN cDNA 1700018L24 gene	BC049746|1700018L24Rik|75528|RIKEN cDNA 1700018L24 gene	NM_029326|1700018L24Rik|75528|RIKEN cDNA 1700018L24 gene
mm9_v1_chr2_+_162760216_162760271	0.222872	NKX3-1.p2	BC029312|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr10_-_68004607_68004622	0.222773	NKX3-1.p2	BC087900|1700040L02Rik|73287|RIKEN cDNA 1700040L02 gene	AK006661|1700040L02Rik|73287|RIKEN cDNA 1700040L02 gene	AK029622|1700040L02Rik|73287|RIKEN cDNA 1700040L02 gene	NM_028491|1700040L02Rik|73287|RIKEN cDNA 1700040L02 gene
mm9_v1_chr7_+_11591093_11591093	0.221664	NKX3-1.p2	BC050218|Zscan4c|245109|zinc finger and SCAN domain containing 4C	NM_001013765|Zscan4c|245109|zinc finger and SCAN domain containing 4C
mm9_v1_chr5_-_87569342_87569376	0.221474	NKX3-1.p2	X06358|Ugt2b5|22238|UDP glucuronosyltransferase 2 family, polypeptide B5	BC028262|Ugt2b5|22238|UDP glucuronosyltransferase 2 family, polypeptide B5	AK136480|Ugt2b5|22238|UDP glucuronosyltransferase 2 family, polypeptide B5	NM_009467|Ugt2b5|22238|UDP glucuronosyltransferase 2 family, polypeptide B5
mm9_v1_chr6_-_56312803_56312803	0.221136	NKX3-1.p2	AK050499|Pde1c|18575|phosphodiesterase 1C	NM_001159960|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr7_+_59134514_59134648	0.220516	NKX3-1.p2	NM_008087|Gas2|14453|growth arrest specific 2	M21828|Gas2|14453|growth arrest specific 2
mm9_v1_chr6_-_24465033_24465068	0.220116	NKX3-1.p2	BC137937|Iqub|214704|IQ motif and ubiquitin domain containing	BC137957|Iqub|214704|IQ motif and ubiquitin domain containing	AK133019|Iqub|214704|IQ motif and ubiquitin domain containing	AK029931|Iqub|214704|IQ motif and ubiquitin domain containing	NM_172535|Iqub|214704|IQ motif and ubiquitin domain containing
mm9_v1_chrX_+_111587911_111588212	0.214842	NKX3-1.p2	AK081448|Klhl4|237010|kelch-like 4 (Drosophila)	AK085099|Klhl4|237010|kelch-like 4 (Drosophila)	AK161786|Klhl4|237010|kelch-like 4 (Drosophila)	BC099954|Klhl4|237010|kelch-like 4 (Drosophila)	AK081937|Klhl4|237010|kelch-like 4 (Drosophila)	NM_172781|Klhl4|237010|kelch-like 4 (Drosophila)	BC141251|Klhl4|237010|kelch-like 4 (Drosophila)	BC057137|Klhl4|237010|kelch-like 4 (Drosophila)	AK044930|Klhl4|237010|kelch-like 4 (Drosophila)
mm9_v1_chr5_+_90890764_90890776	0.213455	NKX3-1.p2	AK050644|Alb|11657|albumin
mm9_v1_chr5_-_111239115_111239150	0.213148	NKX3-1.p2	AK154939|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)
mm9_v1_chr11_+_117693543_117693586	0.209009	NKX3-1.p2	AK018563|Afmid|71562|arylformamidase
mm9_v1_chr1_+_167391318_167391475	0.208673	NKX3-1.p2	AK011889|Brp44|70456|brain protein 44	NM_027430|Brp44|70456|brain protein 44	AK151522|Brp44|70456|brain protein 44	AK002233|Brp44|70456|brain protein 44	AK008044|Brp44|70456|brain protein 44
mm9_v1_chr15_+_98538624_98538661	0.208461	NKX3-1.p2	AK077174|Ccdc65|105833|coiled-coil domain containing 65	BC048073|Ccdc65|105833|coiled-coil domain containing 65	AF454432|Ccdc65|105833|coiled-coil domain containing 65	NM_153518|Ccdc65|105833|coiled-coil domain containing 65	BC056947|Ccdc65|105833|coiled-coil domain containing 65	BC060155|Ccdc65|105833|coiled-coil domain containing 65
mm9_v1_chr6_-_69557773_69557830	0.207944	NKX3-1.p2	
mm9_v1_chr2_-_155266518_155266522	0.207914	NKX3-1.p2	BC083187|Ncoa6|56406|nuclear receptor coactivator 6	NM_019825|Ncoa6|56406|nuclear receptor coactivator 6	BC031113|Ncoa6|56406|nuclear receptor coactivator 6
mm9_v1_chr6_+_133479206_133479206	0.207559	NKX3-1.p2	NM_001185040|Gm5885|545884|predicted gene 5885
mm9_v1_chrM_+_11741_11742	0.207229	NKX3-1.p2	AK140457|ND5|17721|NADH dehydrogenase subunit 5
mm9_v1_chr4_-_61748264_61748345	0.205426	NKX3-1.p2	EU882235|Mup3|17842|major urinary protein 3	M27608|Mup3|17842|major urinary protein 3	X03525|Mup3|17842|major urinary protein 3	BC019965|Mup3|17842|major urinary protein 3	BC106100|Mup3|17842|major urinary protein 3	BC059102|Mup3|17842|major urinary protein 3	NM_001039544|Mup3|17842|major urinary protein 3
mm9_v1_chr7_-_11751496_11751496	0.205305	NKX3-1.p2	EF143406|Zscan4d|545913|zinc finger and SCAN domain containing 4D	NM_001100186|Zscan4d|545913|zinc finger and SCAN domain containing 4D
mm9_v1_chr19_-_11765519_11765545	0.205173	NKX3-1.p2	BC100313|Oosp1|170834|oocyte secreted protein 1	AB086437|Oosp1|170834|oocyte secreted protein 1	AB050982|Oosp1|170834|oocyte secreted protein 1	AK033038|Oosp1|170834|oocyte secreted protein 1	AK162132|Oosp1|170834|oocyte secreted protein 1	NM_133353|Oosp1|170834|oocyte secreted protein 1	AF420487|Oosp1|170834|oocyte secreted protein 1
mm9_v1_chr5_-_105539282_105539310	0.202514	NKX3-1.p2	BC057170|Gbp9|236573|guanylate-binding protein 9	DQ985742|Gbp9|236573|guanylate-binding protein 9	AK165231|Gbp9|236573|guanylate-binding protein 9	AK088861|Gbp9|236573|guanylate-binding protein 9	NM_172777|Gbp9|236573|guanylate-binding protein 9
mm9_v1_chr5_-_124028994_124029065	0.20241	NKX3-1.p2	AK003546|Clip1|56430|CAP-GLY domain containing linker protein 1
mm9_v1_chrX_-_151324809_151324809	0.200544	NKX3-1.p2	NM_001097980|Gm16390|100040937|predicted gene 16390
mm9_v1_chr5_+_34763499_34763499	0.199563	NKX3-1.p2	BC099925|Fam193a|231128|family with sequence similarity 193, member A	NM_001030306|Fam193a|231128|family with sequence similarity 193, member A
mm9_v1_chr8_-_119098475_119098517	0.198854	NKX3-1.p2	
mm9_v1_chr5_+_118426802_118426818	0.194252	NKX3-1.p2	AK048131|Fbxo21|231670|F-box protein 21	AK048542|Fbxo21|231670|F-box protein 21
mm9_v1_chr2_+_24132788_24133018	0.193897	NKX3-1.p2	AK008977|Il1f5|54450|interleukin 1 family, member 5 (delta)	AK009741|Il1f5|54450|interleukin 1 family, member 5 (delta)	AK076547|Il1f5|54450|interleukin 1 family, member 5 (delta)	NM_019451|Il1f5|54450|interleukin 1 family, member 5 (delta)	AK010020|Il1f5|54450|interleukin 1 family, member 5 (delta)	AF200495|Il1f5|54450|interleukin 1 family, member 5 (delta)	AJ250429|Il1f5|54450|interleukin 1 family, member 5 (delta)	BC132600|Il1f5|54450|interleukin 1 family, member 5 (delta)	BC132602|Il1f5|54450|interleukin 1 family, member 5 (delta)	AF230378|Il1f5|54450|interleukin 1 family, member 5 (delta)
mm9_v1_chr6_+_33922645_33922791	0.193047	NKX3-1.p2	
mm9_v1_chr7_-_109166133_109166163	0.192853	NKX3-1.p2	BC018332|Il18bp|16068|interleukin 18 binding protein	AF110803|Il18bp|16068|interleukin 18 binding protein	AK009721|Il18bp|16068|interleukin 18 binding protein	AK008452|Il18bp|16068|interleukin 18 binding protein
mm9_v1_chrX_+_160935834_160935842	0.192845	NKX3-1.p2	AK005878|Asb9|69299|ankyrin repeat and SOCS box-containing 9	NM_027027|Asb9|69299|ankyrin repeat and SOCS box-containing 9	BC061038|Asb9|69299|ankyrin repeat and SOCS box-containing 9
mm9_v1_chr1_+_89491124_89491171	0.191262	NKX3-1.p2	AB028023|Neu2|23956|neuraminidase 2	BC105657|Neu2|23956|neuraminidase 2	BC105658|Neu2|23956|neuraminidase 2	BC105659|Neu2|23956|neuraminidase 2	BC105661|Neu2|23956|neuraminidase 2	NM_015750|Neu2|23956|neuraminidase 2	AK009828|Neu2|23956|neuraminidase 2
mm9_v1_chr6_-_129573858_129573881	0.190977	NKX3-1.p2	AF030313|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1	NM_001083322|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1	AK170499|Klrk1|27007|killer cell lectin-like receptor subfamily K, member 1
mm9_v1_chr2_-_3283840_3283862	0.190433	NKX3-1.p2	BC025001|Olah|99035|oleoyl-ACP hydrolase	NM_145921|Olah|99035|oleoyl-ACP hydrolase	AK087571|Olah|99035|oleoyl-ACP hydrolase
mm9_v1_chr6_+_65729006_65729018	0.190233	NKX3-1.p2	AK021384|Prdm5|70779|PR domain containing 5	BC089598|Prdm5|70779|PR domain containing 5	AK018310|Prdm5|70779|PR domain containing 5
mm9_v1_chr11_-_109689335_109689359	0.190233	NKX3-1.p2	BC048675|1700012B07Rik|69324|RIKEN cDNA 1700012B07 gene	BC099559|1700012B07Rik|69324|RIKEN cDNA 1700012B07 gene	AK005888|1700012B07Rik|69324|RIKEN cDNA 1700012B07 gene	AK160153|1700012B07Rik|69324|RIKEN cDNA 1700012B07 gene	AK132924|1700012B07Rik|69324|RIKEN cDNA 1700012B07 gene	NM_001162428|1700012B07Rik|69324|RIKEN cDNA 1700012B07 gene	NM_027038|1700012B07Rik|69324|RIKEN cDNA 1700012B07 gene
mm9_v1_chr16_-_36562219_36562219	0.18966	NKX3-1.p2	AF110178|Casr|12374|calcium-sensing receptor	AF110179|Casr|12374|calcium-sensing receptor	NM_013803|Casr|12374|calcium-sensing receptor
mm9_v1_chr10_-_41307558_41307558	0.188058	NKX3-1.p2	AK017165|Ccdc162|75973|coiled-coil domain containing 162	NM_001177571|Ccdc162|75973|coiled-coil domain containing 162
mm9_v1_chr7_-_105347984_105347990	0.1862	NKX3-1.p2	NM_001081167|B3gnt6|272411|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	BC039789|B3gnt6|272411|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)
mm9_v1_chr7_+_22134391_22134391	0.185125	NKX3-1.p2	NM_001166739|Vmn1r128|667199|vomeronasal 1 receptor 128
mm9_v1_chr8_+_36740640_36740782	0.184948	NKX3-1.p2	AK010068|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1
mm9_v1_chr3_-_116210955_116211092	0.182987	NKX3-1.p2	AK167830|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK151108|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK151400|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK159961|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK002543|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	BC016519|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK009245|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	BC090403|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK152129|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	NM_025517|Rtcd1|66368|RNA terminal phosphate cyclase domain 1
mm9_v1_chr19_-_41922577_41922621	0.18119	NKX3-1.p2	BC034214|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	BC085510|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	AK081171|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	NM_177603|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2
mm9_v1_chrX_-_7595584_7595617	0.18053	NKX3-1.p2	BC061027|Glod5|69824|glyoxalase domain containing 5	AK008008|Glod5|69824|glyoxalase domain containing 5	NM_027227|Glod5|69824|glyoxalase domain containing 5
mm9_v1_chr4_+_52609145_52609145	0.179723	NKX3-1.p2	AK019748|4930547C10Rik|68274|RIKEN cDNA 4930547C10 gene	NM_026652|4930547C10Rik|68274|RIKEN cDNA 4930547C10 gene
mm9_v1_chr7_+_49515422_49515422	0.179286	NKX3-1.p2	NM_001105058|Vmn2r61|637873|vomeronasal 2, receptor 61
mm9_v1_chr9_-_90009416_90009657	0.174107	NKX3-1.p2	AK167079|Morf4l1|21761|mortality factor 4 like 1	AK164251|Morf4l1|21761|mortality factor 4 like 1	AK010528|Morf4l1|21761|mortality factor 4 like 1	AK011441|Morf4l1|21761|mortality factor 4 like 1	AK182816|Morf4l1|21761|mortality factor 4 like 1	AK218718|Morf4l1|21761|mortality factor 4 like 1	BC083094|Morf4l1|21761|mortality factor 4 like 1	AK152119|Morf4l1|21761|mortality factor 4 like 1	AK168585|Morf4l1|21761|mortality factor 4 like 1	AK168608|Morf4l1|21761|mortality factor 4 like 1	AK150925|Morf4l1|21761|mortality factor 4 like 1	AK220441|Morf4l1|21761|mortality factor 4 like 1	AK146210|Morf4l1|21761|mortality factor 4 like 1	AK168327|Morf4l1|21761|mortality factor 4 like 1	AK169065|Morf4l1|21761|mortality factor 4 like 1	AK168674|Morf4l1|21761|mortality factor 4 like 1	AB042241|Morf4l1|21761|mortality factor 4 like 1	AF319620|Morf4l1|21761|mortality factor 4 like 1	AF319621|Morf4l1|21761|mortality factor 4 like 1	BC085103|Morf4l1|21761|mortality factor 4 like 1	BC003894|Morf4l1|21761|mortality factor 4 like 1	BC017619|Morf4l1|21761|mortality factor 4 like 1	BC083118|Morf4l1|21761|mortality factor 4 like 1	BC092293|Morf4l1|21761|mortality factor 4 like 1	BC103783|Morf4l1|21761|mortality factor 4 like 1	AK011249|Morf4l1|21761|mortality factor 4 like 1	AK016414|Morf4l1|21761|mortality factor 4 like 1	NM_001039147|Morf4l1|21761|mortality factor 4 like 1	NM_024431|Morf4l1|21761|mortality factor 4 like 1
mm9_v1_chr16_+_91465229_91465258	0.17369	NKX3-1.p2	AK020819|A930006K02Rik|78433|RIKEN cDNA A930006K02 gene
mm9_v1_chr19_+_8692485_8692668	0.173314	NKX3-1.p2	NM_008766|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	BC021647|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	U52842|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	AK035971|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6
mm9_v1_chr6_-_69599335_69599382	0.172317	NKX3-1.p2	
mm9_v1_chr8_+_26918945_26918985	0.17225	NKX3-1.p2	AK019725|Star|20845|steroidogenic acute regulatory protein	BC060970|Star|20845|steroidogenic acute regulatory protein	AK136327|Star|20845|steroidogenic acute regulatory protein	AK014431|Star|20845|steroidogenic acute regulatory protein	AK054470|Star|20845|steroidogenic acute regulatory protein	NM_011485|Star|20845|steroidogenic acute regulatory protein	BC082283|Star|20845|steroidogenic acute regulatory protein	L36062|Star|20845|steroidogenic acute regulatory protein
mm9_v1_chr9_-_35597630_35597696	0.169866	NKX3-1.p2	BC027498|D730048I06Rik|68171|RIKEN cDNA D730048I06 gene	AK020310|D730048I06Rik|68171|RIKEN cDNA D730048I06 gene	AK020299|D730048I06Rik|68171|RIKEN cDNA D730048I06 gene	AK020302|D730048I06Rik|68171|RIKEN cDNA D730048I06 gene	AK021351|D730048I06Rik|68171|RIKEN cDNA D730048I06 gene	AK136636|D730048I06Rik|68171|RIKEN cDNA D730048I06 gene	AK136605|D730048I06Rik|68171|RIKEN cDNA D730048I06 gene	AK033813|D730048I06Rik|68171|RIKEN cDNA D730048I06 gene	NM_026593|D730048I06Rik|68171|RIKEN cDNA D730048I06 gene
mm9_v1_chr4_-_34136995_34137041	0.16953	NKX3-1.p2	AK007270|Spaca1|67652|sperm acrosome associated 1	AK016011|Spaca1|67652|sperm acrosome associated 1	BC147079|Spaca1|67652|sperm acrosome associated 1	BC147080|Spaca1|67652|sperm acrosome associated 1	AK006187|Spaca1|67652|sperm acrosome associated 1	NM_026293|Spaca1|67652|sperm acrosome associated 1
mm9_v1_chr4_+_143157369_143157377	0.168864	NKX3-1.p2	NM_001007579|BC080695|329986|cDNA sequence BC080695	BC080695|BC080695|329986|cDNA sequence BC080695
mm9_v1_chr7_-_11490398_11490398	0.165134	NKX3-1.p2	NM_001185173|Zscan4b|665780|zinc finger and SCAN domain containing 4B
mm9_v1_chr2_+_163051189_163051200	0.164816	NKX3-1.p2	NM_001098799|Tox2|269389|TOX high mobility group box family member 2
mm9_v1_chr8_-_46380165_46380188	0.164559	NKX3-1.p2	NM_008455|Klkb1|16621|kallikrein B, plasma 1
mm9_v1_chr2_-_34610751_34610751	0.160006	NKX3-1.p2	BC060123|Gapvd1|66691|GTPase activating protein and VPS9 domains 1	NM_025709|Gapvd1|66691|GTPase activating protein and VPS9 domains 1
mm9_v1_chr7_-_22104879_22104879	0.159717	NKX3-1.p2	NM_001166726|Vmn1r127|621561|vomeronasal 1 receptor 127
mm9_v1_chr17_-_35971913_35971974	0.156914	NKX3-1.p2	AK188748|Tubb5|22154|tubulin, beta 5	AK196888|Tubb5|22154|tubulin, beta 5
mm9_v1_chr4_-_43849385_43849388	0.156747	NKX3-1.p2	BC137911|Olfr157|100040268|olfactory receptor 157	BC137912|Olfr157|100040268|olfactory receptor 157	NM_019475|Olfr157|100040268|olfactory receptor 157
mm9_v1_chr4_+_102664399_102664426	0.15639	NKX3-1.p2	NM_001163768|Tctex1d1|67344|Tctex1 domain containing 1	AK040270|Tctex1d1|67344|Tctex1 domain containing 1
mm9_v1_chr16_+_36931240_36931258	0.15461	NKX3-1.p2	BC055037|Golgb1|224139|golgi autoantigen, golgin subfamily b, macrogolgin 1
mm9_v1_chr5_-_74023659_74023666	0.15345	NKX3-1.p2	BC031901|Lrrc66|231296|leucine rich repeat containing 66	NM_153568|Lrrc66|231296|leucine rich repeat containing 66	AK051875|Lrrc66|231296|leucine rich repeat containing 66
mm9_v1_chr16_-_57292963_57292977	0.151348	NKX3-1.p2	AK161475|Tmem30c|71027|transmembrane protein 30C	NM_027651|Tmem30c|71027|transmembrane protein 30C	AK016747|Tmem30c|71027|transmembrane protein 30C	AK016597|Tmem30c|71027|transmembrane protein 30C
mm9_v1_chr7_-_11896030_11896030	0.150578	NKX3-1.p2	NM_001161802|Zscan4e|665848|zinc finger and SCAN domain containing 4E
mm9_v1_chr2_-_44965866_44965983	0.148636	NKX3-1.p2	AK122312|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535781|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535783|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr8_-_5105158_5105231	0.147825	NKX3-1.p2	D87059|Slc10a2|20494|solute carrier family 10, member 2	BC120703|Slc10a2|20494|solute carrier family 10, member 2	BC125290|Slc10a2|20494|solute carrier family 10, member 2	AB002693|Slc10a2|20494|solute carrier family 10, member 2	AY529655|Slc10a2|20494|solute carrier family 10, member 2	AY529656|Slc10a2|20494|solute carrier family 10, member 2	NM_011388|Slc10a2|20494|solute carrier family 10, member 2
mm9_v1_chr16_+_89206105_89206105	0.146694	NKX3-1.p2	AK004483|Krtap20-2|622935|keratin associated protein 20-2	NM_001163615|Krtap20-2|622935|keratin associated protein 20-2
mm9_v1_chr2_+_154262114_154262265	0.146575	NKX3-1.p2	AK148027|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_009823|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_172860|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK040403|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	DQ213025|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	BC064679|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK049206|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)
mm9_v1_chr10_-_61441817_61441832	0.14647	NKX3-1.p2	BC034164|Col13a1|12817|collagen, type XIII, alpha 1
mm9_v1_chr7_-_106976715_106976926	0.146044	NKX3-1.p2	BC116892|Neu3|50877|neuraminidase 3	BC116924|Neu3|50877|neuraminidase 3	AK050428|Neu3|50877|neuraminidase 3	AK134405|Neu3|50877|neuraminidase 3	AB026842|Neu3|50877|neuraminidase 3	NM_016720|Neu3|50877|neuraminidase 3
mm9_v1_chr8_-_46380114_46380132	0.145894	NKX3-1.p2	BC026555|Klkb1|16621|kallikrein B, plasma 1
mm9_v1_chr14_-_96918064_96918252	0.142956	NKX3-1.p2	AK031932|Klhl1|93688|kelch-like 1 (Drosophila)	AF252281|Klhl1|93688|kelch-like 1 (Drosophila)	BC094584|Klhl1|93688|kelch-like 1 (Drosophila)	NM_053105|Klhl1|93688|kelch-like 1 (Drosophila)
mm9_v1_chr8_-_113555584_113555650	0.142488	NKX3-1.p2	AK033235|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	NM_001190786|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
mm9_v1_chr13_+_67880629_67880739	0.142349	NKX3-1.p2	NM_028402|Zfp493|72958|zinc finger protein 493	AK013687|Zfp493|72958|zinc finger protein 493	AK140336|Zfp493|72958|zinc finger protein 493
mm9_v1_chr1_-_179178874_179178897	0.141388	NKX3-1.p2	AF124142|Akt3|23797|thymoma viral proto-oncogene 3	BC066861|Akt3|23797|thymoma viral proto-oncogene 3	NM_011785|Akt3|23797|thymoma viral proto-oncogene 3
mm9_v1_chr19_-_27463532_27463668	0.140167	NKX3-1.p2	
mm9_v1_chr13_+_28234352_28234406	0.139601	NKX3-1.p2	AK005447|Prl5a1|28078|prolactin family 5, subfamily a, member 1	NM_023746|Prl5a1|28078|prolactin family 5, subfamily a, member 1	BC051672|Prl5a1|28078|prolactin family 5, subfamily a, member 1	AF226611|Prl5a1|28078|prolactin family 5, subfamily a, member 1
mm9_v1_chrX_+_137457727_137457737	0.139594	NKX3-1.p2	AK006862|Vsig1|78789|V-set and immunoglobulin domain containing 1	NM_026103|Vsig1|78789|V-set and immunoglobulin domain containing 1	AK006251|Vsig1|78789|V-set and immunoglobulin domain containing 1	BC048589|Vsig1|78789|V-set and immunoglobulin domain containing 1
mm9_v1_chr7_-_133558344_133558387	0.139526	NKX3-1.p2	AK172008|Cd19|12478|CD19 antigen	AK089835|Cd19|12478|CD19 antigen	AK163608|Cd19|12478|CD19 antigen	NM_009844|Cd19|12478|CD19 antigen	AK156125|Cd19|12478|CD19 antigen
mm9_v1_chr7_-_34926107_34926132	0.138391	NKX3-1.p2	AK218279|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK208593|Uba2|50995|ubiquitin-like modifier activating enzyme 2
mm9_v1_chr11_+_5662121_5662197	0.137577	NKX3-1.p2	AK009198|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	AK005556|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	AK008730|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	BC052911|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	BC094935|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene
mm9_v1_chr6_+_73226746_73226754	0.137101	NKX3-1.p2	AK194483|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit
mm9_v1_chr9_+_99356661_99356661	0.134547	NKX3-1.p2	NM_001165957|Txndc6|623534|thioredoxin domain containing 6
mm9_v1_chr4_-_43666412_43666469	0.134071	NKX3-1.p2	AK132968|Spag8|433700|sperm associated antigen 8	AY769082|Spag8|433700|sperm associated antigen 8	NM_001007463|Spag8|433700|sperm associated antigen 8	BC150868|Spag8|433700|sperm associated antigen 8
mm9_v1_chr8_+_34681015_34681015	0.132482	NKX3-1.p2	AF285589|Tex15|104271|testis expressed gene 15	NM_031374|Tex15|104271|testis expressed gene 15
mm9_v1_chr6_-_85019497_85019518	0.132387	NKX3-1.p2	AK144547|Exoc6b|75914|exocyst complex component 6B	NM_177077|Exoc6b|75914|exocyst complex component 6B
mm9_v1_chr10_-_122550401_122550537	0.13192	NKX3-1.p2	AK088952|Usp15|14479|ubiquitin specific peptidase 15
mm9_v1_chr6_+_38059352_38059360	0.130531	NKX3-1.p2	AK021320|Tmem213|77522|transmembrane protein 213	NM_029921|Tmem213|77522|transmembrane protein 213	BC104374|Tmem213|77522|transmembrane protein 213	BC104375|Tmem213|77522|transmembrane protein 213	BC119477|Tmem213|77522|transmembrane protein 213
mm9_v1_chr12_-_82480450_82480472	0.129698	NKX3-1.p2	BC141094|Gm4787|214321|predicted gene 4787	NM_001038995|Gm4787|214321|predicted gene 4787
mm9_v1_chr7_+_11983263_11983263	0.127859	NKX3-1.p2	AK141250|Zscan4f|665902|zinc finger and SCAN domain containing 4F	NM_001110316|Zscan4f|665902|zinc finger and SCAN domain containing 4F
mm9_v1_chrX_+_160600108_160600153	0.124785	NKX3-1.p2	AK135357|Ace2|70008|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
mm9_v1_chr1_+_133693944_133694029	0.123777	NKX3-1.p2	AK128969|Pm20d1|212933|peptidase M20 domain containing 1	BC120725|Pm20d1|212933|peptidase M20 domain containing 1	BC125395|Pm20d1|212933|peptidase M20 domain containing 1	NM_178079|Pm20d1|212933|peptidase M20 domain containing 1	AK028883|Pm20d1|212933|peptidase M20 domain containing 1	AK143953|Pm20d1|212933|peptidase M20 domain containing 1
mm9_v1_chr5_-_109435454_109435489	0.1219	NKX3-1.p2	NM_009491|Vmn2r10|22307|vomeronasal 2, receptor 10	AF011426|Vmn2r10|22307|vomeronasal 2, receptor 10
mm9_v1_chr1_-_175529396_175529434	0.1218	NKX3-1.p2	AK143015|Pydc4|623121|pyrin domain containing 4	NM_001177349|Pydc4|623121|pyrin domain containing 4	NM_001177350|Pydc4|623121|pyrin domain containing 4
mm9_v1_chr12_+_106429252_106429254	0.121575	NKX3-1.p2	AF195490|Tcl1b3|27378|T-cell leukemia/lymphoma 1B, 3	BC119260|Tcl1b3|27378|T-cell leukemia/lymphoma 1B, 3	BC120575|Tcl1b3|27378|T-cell leukemia/lymphoma 1B, 3	NM_013772|Tcl1b3|27378|T-cell leukemia/lymphoma 1B, 3
mm9_v1_chr8_+_28153013_28153055	0.121328	NKX3-1.p2	NM_001039077|Prosc|114863|proline synthetase co-transcribed	NM_001039078|Prosc|114863|proline synthetase co-transcribed	NM_054057|Prosc|114863|proline synthetase co-transcribed	BC061045|Prosc|114863|proline synthetase co-transcribed	AK147670|Prosc|114863|proline synthetase co-transcribed
mm9_v1_chr2_+_112307393_112307430	0.119708	NKX3-1.p2	AK045622|2900064A13Rik|73024|RIKEN cDNA 2900064A13 gene
mm9_v1_chr6_+_24807982_24808063	0.117908	NKX3-1.p2	AK017112|Hyal5|74468|hyaluronoglucosaminidase 5	AK133387|Hyal5|74468|hyaluronoglucosaminidase 5	NM_028957|Hyal5|74468|hyaluronoglucosaminidase 5	BC145992|Hyal5|74468|hyaluronoglucosaminidase 5	BC145994|Hyal5|74468|hyaluronoglucosaminidase 5
mm9_v1_chr10_-_75573682_75573762	0.117721	NKX3-1.p2	AF411960|Slc5a4b|64454|solute carrier family 5 (neutral amino acid transporters, system A), member 4b	BC109133|Slc5a4b|64454|solute carrier family 5 (neutral amino acid transporters, system A), member 4b	BC109134|Slc5a4b|64454|solute carrier family 5 (neutral amino acid transporters, system A), member 4b	BC127612|Slc5a4b|64454|solute carrier family 5 (neutral amino acid transporters, system A), member 4b	BC127615|Slc5a4b|64454|solute carrier family 5 (neutral amino acid transporters, system A), member 4b	BC128465|Slc5a4b|64454|solute carrier family 5 (neutral amino acid transporters, system A), member 4b	AK144296|Slc5a4b|64454|solute carrier family 5 (neutral amino acid transporters, system A), member 4b	AF251268|Slc5a4b|64454|solute carrier family 5 (neutral amino acid transporters, system A), member 4b	NM_023219|Slc5a4b|64454|solute carrier family 5 (neutral amino acid transporters, system A), member 4b
mm9_v1_chr19_-_5771326_5771432	0.114049	NKX3-1.p2	BC034519|Scyl1|78891|SCY1-like 1 (S. cerevisiae)	AK144134|Scyl1|78891|SCY1-like 1 (S. cerevisiae)	AK019240|Scyl1|78891|SCY1-like 1 (S. cerevisiae)	AK134356|Scyl1|78891|SCY1-like 1 (S. cerevisiae)	AK161813|Scyl1|78891|SCY1-like 1 (S. cerevisiae)	AF276514|Scyl1|78891|SCY1-like 1 (S. cerevisiae)	NM_023912|Scyl1|78891|SCY1-like 1 (S. cerevisiae)	AK145869|Scyl1|78891|SCY1-like 1 (S. cerevisiae)
mm9_v1_chr6_+_142246944_142246973	0.11378	NKX3-1.p2	NM_010491|Iapp|15874|islet amyloid polypeptide	BC027527|Iapp|15874|islet amyloid polypeptide
mm9_v1_chr2_+_153956082_153956082	0.111919	NKX3-1.p2	AK006829|1700058C13Rik|73388|RIKEN cDNA 1700058C13 gene	BC049691|1700058C13Rik|73388|RIKEN cDNA 1700058C13 gene	NM_028528|1700058C13Rik|73388|RIKEN cDNA 1700058C13 gene
mm9_v1_chr7_+_25039812_25039838	0.109809	NKX3-1.p2	AK032355|Zfp108|54678|zinc finger protein 108	NM_018791|Zfp108|54678|zinc finger protein 108	AF167315|Zfp108|54678|zinc finger protein 108
mm9_v1_chr14_-_44397257_44397303	0.10857	NKX3-1.p2	BC117060|Ear1|13586|eosinophil-associated, ribonuclease A family, member 1	AY316149|Ear1|13586|eosinophil-associated, ribonuclease A family, member 1	NM_007894|Ear1|13586|eosinophil-associated, ribonuclease A family, member 1
mm9_v1_chr7_-_22949053_22949053	0.108317	NKX3-1.p2	NM_001166723|Vmn1r94|620537|vomeronasal 1 receptor 94	NM_001166749|Vmn1r142|667464|vomeronasal 1 receptor 142
mm9_v1_chr2_-_101489613_101489698	0.107669	NKX3-1.p2	BC138342|Rag1|19373|recombination activating gene 1	M29475|Rag1|19373|recombination activating gene 1	AK088725|Rag1|19373|recombination activating gene 1	AK162974|Rag1|19373|recombination activating gene 1	DQ112091|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	DQ112092|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	NM_009019|Rag1|19373|recombination activating gene 1
mm9_v1_chr9_-_96978102_96978110	0.106106	NKX3-1.p2	AK087750|Slc25a36|192287|solute carrier family 25, member 36
mm9_v1_chr19_+_29772410_29772430	0.1053	NKX3-1.p2	AK020928|Mlana|77836|melan-A	BC111114|Mlana|77836|melan-A	NM_029993|Mlana|77836|melan-A
mm9_v1_chr16_-_16504310_16504310	0.105199	NKX3-1.p2	AF402612|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139233|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4
mm9_v1_chr7_-_110926856_110926856	0.104481	NKX3-1.p2	NM_013620|Olfr68|18369|olfactory receptor 68
mm9_v1_chr5_-_87964170_87964216	0.104116	NKX3-1.p2	BC024361|Sult1b1|56362|sulfotransferase family 1B, member 1
mm9_v1_chr15_-_75262160_75262258	0.103216	NKX3-1.p2	BC147461|9030619P08Rik|105892|RIKEN cDNA 9030619P08 gene	BC147464|9030619P08Rik|105892|RIKEN cDNA 9030619P08 gene	AK136484|9030619P08Rik|105892|RIKEN cDNA 9030619P08 gene	BC087965|9030619P08Rik|105892|RIKEN cDNA 9030619P08 gene	NM_001039720|9030619P08Rik|105892|RIKEN cDNA 9030619P08 gene
mm9_v1_chr6_-_129457171_129457184	0.100818	NKX3-1.p2	AF303744|Olr1|108078|oxidized low density lipoprotein (lectin-like) receptor 1	AK154687|Olr1|108078|oxidized low density lipoprotein (lectin-like) receptor 1	AK160919|Olr1|108078|oxidized low density lipoprotein (lectin-like) receptor 1	NM_138648|Olr1|108078|oxidized low density lipoprotein (lectin-like) receptor 1
mm9_v1_chr18_+_35776026_35776084	0.099893	NKX3-1.p2	AK012839|Paip2|67869|polyadenylate-binding protein-interacting protein 2
mm9_v1_chr6_-_57273628_57273628	0.0979023	NKX3-1.p2	NM_134184|Vmn1r16|171202|vomeronasal 1 receptor 16
mm9_v1_chr16_-_58918311_58918311	0.0961004	NKX3-1.p2	NM_001011662|Olfr180|258178|olfactory receptor 180
mm9_v1_chr14_+_73992436_73992469	0.0954111	NKX3-1.p2	AK003867|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit
mm9_v1_chr4_-_46416895_46416973	0.0924023	NKX3-1.p2	AK077692|Hemgn|93966|hemogen	AY699986|Hemgn|93966|hemogen	AK156536|Hemgn|93966|hemogen	AK171890|Hemgn|93966|hemogen	AK172421|Hemgn|93966|hemogen
mm9_v1_chr2_+_152495196_152495240	0.0917665	NKX3-1.p2	NM_001159551|H13|14950|histocompatibility 13	NM_001159552|H13|14950|histocompatibility 13	NM_001159553|H13|14950|histocompatibility 13	NM_010376|H13|14950|histocompatibility 13	AJ345032|H13|14950|histocompatibility 13	BC056977|H13|14950|histocompatibility 13	DQ168449|H13|14950|histocompatibility 13	AK012600|H13|14950|histocompatibility 13	AK007664|H13|14950|histocompatibility 13	AK004690|H13|14950|histocompatibility 13	AK019877|H13|14950|histocompatibility 13	AK039008|H13|14950|histocompatibility 13	AK049101|H13|14950|histocompatibility 13	AK159176|H13|14950|histocompatibility 13	AK028109|H13|14950|histocompatibility 13	AF483214|H13|14950|histocompatibility 13	AK080966|H13|14950|histocompatibility 13	AK169922|H13|14950|histocompatibility 13
mm9_v1_chr11_+_104953532_104953539	0.0915006	NKX3-1.p2	NM_001081046|Efcab3|70894|EF-hand calcium binding domain 3	BC050801|Efcab3|70894|EF-hand calcium binding domain 3	AK014861|Efcab3|70894|EF-hand calcium binding domain 3
mm9_v1_chr11_-_87811778_87811799	0.0903107	NKX3-1.p2	BC049621|Dynll2|68097|dynein light chain LC8-type 2	AK006876|Dynll2|68097|dynein light chain LC8-type 2	NM_001168471|Dynll2|68097|dynein light chain LC8-type 2
mm9_v1_chr6_-_130258378_130258378	0.089464	NKX3-1.p2	AF074459|Klra23|79410|killer cell lectin-like receptor subfamily A, member 23	AF074463|Klra23|79410|killer cell lectin-like receptor subfamily A, member 23	NM_024470|Klra23|79410|killer cell lectin-like receptor subfamily A, member 23
mm9_v1_chr3_+_94641626_94641643	0.0891665	NKX3-1.p2	BC085188|Pogz|229584|pogo transposable element with ZNF domain	AK035255|Pogz|229584|pogo transposable element with ZNF domain	AK086062|Pogz|229584|pogo transposable element with ZNF domain	AK161889|Pogz|229584|pogo transposable element with ZNF domain	BC139432|Pogz|229584|pogo transposable element with ZNF domain	BC139433|Pogz|229584|pogo transposable element with ZNF domain
mm9_v1_chr17_-_37761577_37761577	0.0815361	NKX3-1.p2	NM_146632|Olfr116|258625|olfactory receptor 116
mm9_v1_chr4_+_59818521_59818521	0.0812044	NKX3-1.p2	AK147437|Snx30|209131|sorting nexin family member 30	NM_172468|Snx30|209131|sorting nexin family member 30
mm9_v1_chr11_-_11927973_11927973	0.0811093	NKX3-1.p2	BC016111|Grb10|14783|growth factor receptor bound protein 10	NM_001177629|Grb10|14783|growth factor receptor bound protein 10
mm9_v1_chr11_-_79343891_79344047	0.080136	NKX3-1.p2	AK171332|Evi2a|14017|ecotropic viral integration site 2a	AK044098|Evi2a|14017|ecotropic viral integration site 2a	AK162958|Evi2a|14017|ecotropic viral integration site 2a	AK171594|Evi2a|14017|ecotropic viral integration site 2a	AK160302|Evi2a|14017|ecotropic viral integration site 2a	M34896|Evi2a|14017|ecotropic viral integration site 2a
mm9_v1_chr19_+_34082779_34082838	0.0791048	NKX3-1.p2	AK037106|Lipk|240633|lipase, family member K	NM_172837|Lipk|240633|lipase, family member K	BC055815|Lipk|240633|lipase, family member K	AK162706|Lipk|240633|lipase, family member K	BC037229|Lipk|240633|lipase, family member K
mm9_v1_chr7_-_23804941_23804941	0.0784877	NKX3-1.p2	NM_001167166|Gm4216|100043083|predicted gene 4216	NM_001167167|Gm4177|100043025|predicted gene 4177
mm9_v1_chr7_-_22581746_22581746	0.0784877	NKX3-1.p2	NM_001167166|Gm4216|100043083|predicted gene 4216	NM_001167167|Gm4177|100043025|predicted gene 4177
mm9_v1_chr5_-_108998727_108998913	0.0782643	NKX3-1.p2	AK204470|Gak|231580|cyclin G associated kinase	AK205859|Gak|231580|cyclin G associated kinase
mm9_v1_chr7_+_20686506_20686506	0.0766421	NKX3-1.p2	NM_001166736|Vmn1r91|667067|vomeronasal 1 receptor 91
mm9_v1_chr12_-_85741801_85741813	0.0754312	NKX3-1.p2	AK079267|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK002618|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5
mm9_v1_chr7_+_126904427_126904559	0.0741737	NKX3-1.p2	NM_016870|Acsm3|20216|acyl-CoA synthetase medium-chain family member 3	NM_212441|Acsm3|20216|acyl-CoA synthetase medium-chain family member 3	NM_212442|Acsm3|20216|acyl-CoA synthetase medium-chain family member 3	AK143946|Acsm3|20216|acyl-CoA synthetase medium-chain family member 3	AF068246|Acsm3|20216|acyl-CoA synthetase medium-chain family member 3	AY064696|Acsm3|20216|acyl-CoA synthetase medium-chain family member 3	AK041060|Acsm3|20216|acyl-CoA synthetase medium-chain family member 3	AK165516|Acsm3|20216|acyl-CoA synthetase medium-chain family member 3	AK077247|Acsm3|20216|acyl-CoA synthetase medium-chain family member 3	BC015248|Acsm3|20216|acyl-CoA synthetase medium-chain family member 3	AB022340|Acsm3|20216|acyl-CoA synthetase medium-chain family member 3
mm9_v1_chr7_+_27814096_27814122	0.0733799	NKX3-1.p2	BC018356|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	NM_133657|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	BC094017|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	L06463|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12
mm9_v1_chr2_-_26314921_26314925	0.0732634	NKX3-1.p2	AK079454|Notch1|18128|Notch gene homolog 1 (Drosophila)
mm9_v1_chr7_-_22813915_22813915	0.068736	NKX3-1.p2	NM_001166746|Vmn1r111|667292|vomeronasal 1 receptor 111	NM_001166839|Gm4172|100043016|predicted gene 4172	NM_001167168|Gm4220|100043088|predicted gene 4220	NM_001167169|Gm4179|100043029|predicted gene 4179
mm9_v1_chr14_-_111154292_111154370	0.0686082	NKX3-1.p2	AK029275|Slitrk6|239250|SLIT and NTRK-like family, member 6	AK044796|Slitrk6|239250|SLIT and NTRK-like family, member 6	NM_175499|Slitrk6|239250|SLIT and NTRK-like family, member 6
mm9_v1_chr12_+_85702917_85702967	0.0671884	NKX3-1.p2	BC132168|Coq6|217707|coenzyme Q6 homolog (yeast)	BC132170|Coq6|217707|coenzyme Q6 homolog (yeast)	NM_172582|Coq6|217707|coenzyme Q6 homolog (yeast)	BC088736|Coq6|217707|coenzyme Q6 homolog (yeast)	AK131889|Coq6|217707|coenzyme Q6 homolog (yeast)
mm9_v1_chr7_-_21095882_21095882	0.0650009	NKX3-1.p2	NM_001166737|Vmn1r103|667129|vomeronasal 1 receptor 103
mm9_v1_chr3_-_144595486_144595494	0.0641901	NKX3-1.p2	BC139088|AI747448|99709|expressed sequence AI747448	BC139089|AI747448|99709|expressed sequence AI747448	AK136515|AI747448|99709|expressed sequence AI747448	NM_001033199|AI747448|99709|expressed sequence AI747448
mm9_v1_chr5_-_145962668_145962756	0.0640445	NKX3-1.p2	BC099448|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	BC141244|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	U62906|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	BC027512|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	AK153972|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	AK013258|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	AK009842|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	AK138775|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	NM_023322|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14
mm9_v1_chr3_+_116297899_116297929	0.0614076	NKX3-1.p2	AK013338|Sass6|72776|spindle assembly 6 homolog (C. elegans)	BC050110|Sass6|72776|spindle assembly 6 homolog (C. elegans)	NM_028349|Sass6|72776|spindle assembly 6 homolog (C. elegans)	AK145076|Sass6|72776|spindle assembly 6 homolog (C. elegans)	AK165224|Sass6|72776|spindle assembly 6 homolog (C. elegans)
mm9_v1_chr14_-_75992922_75992922	0.0599121	NKX3-1.p2	NM_001164139|Spert|67926|spermatid associated	NM_001164140|Spert|67926|spermatid associated
mm9_v1_chr4_+_141302635_141302765	0.0593349	NKX3-1.p2	AK017155|Agmat|75986|agmatine ureohydrolase (agmatinase)	BC115693|Agmat|75986|agmatine ureohydrolase (agmatinase)
mm9_v1_chr17_+_37138107_37138107	0.0564141	NKX3-1.p2	AK139625|Zfp57|22715|zinc finger protein 57	NM_001168502|Zfp57|22715|zinc finger protein 57
mm9_v1_chr7_+_23840558_23840558	0.0556041	NKX3-1.p2	NM_001166747|Vmn1r135|667404|vomeronasal 1 receptor 135	NM_001166755|Vmn1r163|667586|vomeronasal 1 receptor 163
mm9_v1_chr8_-_8666771_8666782	0.055395	NKX3-1.p2	AK038412|Arglu1|234023|arginine and glutamate rich 1
mm9_v1_chr17_+_25507497_25507596	0.0544048	NKX3-1.p2	NM_012034|Tpsg1|26945|tryptase gamma 1	BC052325|Tpsg1|26945|tryptase gamma 1	BC019974|Tpsg1|26945|tryptase gamma 1	AF175523|Tpsg1|26945|tryptase gamma 1
mm9_v1_chr7_-_21919146_21919146	0.0543013	NKX3-1.p2	NM_001166714|Vmn1r122|435951|vomeronasal 1 receptor 122
mm9_v1_chr9_+_83818720_83818828	0.0542855	NKX3-1.p2	AK089921|Bckdhb|12040|branched chain ketoacid dehydrogenase E1, beta polypeptide	AK156264|Bckdhb|12040|branched chain ketoacid dehydrogenase E1, beta polypeptide	L16992|Bckdhb|12040|branched chain ketoacid dehydrogenase E1, beta polypeptide
mm9_v1_chr7_-_23284696_23284696	0.0534518	NKX3-1.p2	NM_001166712|Vmn1r151|435947|vomeronasal 1 receptor 151
mm9_v1_chr2_-_126609172_126609195	0.0511522	NKX3-1.p2	BC061020|Usp50|75083|ubiquitin specific peptidase 50	BC051141|Usp50|75083|ubiquitin specific peptidase 50	AK015766|Usp50|75083|ubiquitin specific peptidase 50	AK007018|Usp50|75083|ubiquitin specific peptidase 50	NM_029163|Usp50|75083|ubiquitin specific peptidase 50
mm9_v1_chr17_+_55889248_55889329	0.0508022	NKX3-1.p2	AK036459|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	NM_139138|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	AF396935|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	BC120538|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	BC120540|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	AK155935|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	AK037483|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4	AY032690|Emr4|52614|EGF-like module containing, mucin-like, hormone receptor-like sequence 4
mm9_v1_chr5_+_104754347_104754401	0.0481611	NKX3-1.p2	AF298661|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)	NM_053172|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)	AK158231|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)	AK158330|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)	AF314964|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)	BC119162|Mepe|94111|matrix extracellular phosphoglycoprotein with ASARM motif (bone)
mm9_v1_chr6_+_123258350_123258350	0.0457793	NKX3-1.p2	NM_001104632|Vmn2r19|232358|vomeronasal 2, receptor 19
mm9_v1_chr10_+_18127443_18127504	0.0431039	NKX3-1.p2	AK041760|Nhsl1|215819|NHS-like 1	AK017530|Nhsl1|215819|NHS-like 1	NM_173390|Nhsl1|215819|NHS-like 1	AK038892|Nhsl1|215819|NHS-like 1
mm9_v1_chr10_+_110929965_110929972	0.0430109	NKX3-1.p2	AK216281|Nap1l1|53605|nucleosome assembly protein 1-like 1
mm9_v1_chr4_-_135609279_135609318	0.0426604	NKX3-1.p2	AK011211|Rpl11|67025|ribosomal protein L11	AK011800|Rpl11|67025|ribosomal protein L11	AK169053|Rpl11|67025|ribosomal protein L11	AK002998|Rpl11|67025|ribosomal protein L11	AK008422|Rpl11|67025|ribosomal protein L11	AK013923|Rpl11|67025|ribosomal protein L11	AK014593|Rpl11|67025|ribosomal protein L11	AK153486|Rpl11|67025|ribosomal protein L11	AK164445|Rpl11|67025|ribosomal protein L11	NM_025919|Rpl11|67025|ribosomal protein L11	AK088967|Rpl11|67025|ribosomal protein L11
mm9_v1_chr7_+_135021214_135021214	0.0417652	NKX3-1.p2	BC079907|Zfp646|233905|zinc finger protein 646	NM_172749|Zfp646|233905|zinc finger protein 646
mm9_v1_chr4_-_43713678_43713678	0.0408986	NKX3-1.p2	BC046311|Olfr70|56014|olfactory receptor 70	NM_019485|Olfr70|56014|olfactory receptor 70
mm9_v1_chr7_+_21119185_21119185	0.0386492	NKX3-1.p2	NM_001166738|Vmn1r104|667135|vomeronasal 1 receptor 104	NM_001166752|Vmn1r152|667504|vomeronasal 1 receptor 152
mm9_v1_chr10_-_53350244_53350244	0.0385242	NKX3-1.p2	NM_027830|Mcm9|71567|minichromosome maintenance complex component 9
mm9_v1_chr4_+_24900565_24900565	0.0372198	NKX3-1.p2	AK036257|Gpr63|81006|G protein-coupled receptor 63	NM_030733|Gpr63|81006|G protein-coupled receptor 63
mm9_v1_chr17_-_20761835_20761840	0.0372054	NKX3-1.p2	BC134352|Fpr-rs3|14290|formyl peptide receptor, related sequence 3	NM_008040|Fpr-rs3|14290|formyl peptide receptor, related sequence 3
mm9_v1_chr10_+_127213437_127213522	0.0343582	NKX3-1.p2	BC056642|Rdh9|103142|retinol dehydrogenase 9	AF372838|Rdh9|103142|retinol dehydrogenase 9	NM_153133|Rdh9|103142|retinol dehydrogenase 9	BC141318|Rdh9|103142|retinol dehydrogenase 9	AB081322|Rdh9|103142|retinol dehydrogenase 9
mm9_v1_chr7_+_88006993_88006993	0.0328717	NKX3-1.p2	BC046961|Zscan2|22691|zinc finger and SCAN domain containing 2	NM_009553|Zscan2|22691|zinc finger and SCAN domain containing 2
mm9_v1_chr10_-_31134240_31134240	0.0312899	NKX3-1.p2	NM_011509|Gm3258|100041294|predicted gene 3258
mm9_v1_chr13_+_14705508_14705551	0.0305335	NKX3-1.p2	AK136115|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	NM_008944|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK151883|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK152862|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK167752|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK012990|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK035578|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK154011|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK012119|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	BC026768|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AF099733|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2
mm9_v1_chr17_-_30749591_30749606	0.0304355	NKX3-1.p2	NM_001113560|Glo1|109801|glyoxalase 1	NM_025374|Glo1|109801|glyoxalase 1
mm9_v1_chr10_-_90579986_90580013	0.0284882	NKX3-1.p2	AK198800|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK190863|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK184040|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK191542|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK191799|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK194450|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK194768|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK200191|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK200546|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK200877|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK202780|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK203032|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK203930|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK213202|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK215444|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK193469|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK196032|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
mm9_v1_chr15_+_41662472_41662583	0.0280195	NKX3-1.p2	NM_001130164|Oxr1|170719|oxidation resistance 1	AK014186|3110047M12Rik|73184|RIKEN cDNA 3110047M12 gene
mm9_v1_chr9_+_7628229_7628230	0.0273611	NKX3-1.p2	BC152335|Mmp20|30800|matrix metallopeptidase 20 (enamelysin)	BC152336|Mmp20|30800|matrix metallopeptidase 20 (enamelysin)	AF155933|Mmp20|30800|matrix metallopeptidase 20 (enamelysin)	NM_013903|Mmp20|30800|matrix metallopeptidase 20 (enamelysin)
mm9_v1_chr11_-_115794319_115794319	0.0253272	NKX3-1.p2	AB059999|Recql5|170472|RecQ protein-like 5	NM_130454|Recql5|170472|RecQ protein-like 5
mm9_v1_chr5_+_108329554_108329638	0.0246305	NKX3-1.p2	AK013107|Rpl5|100503670|ribosomal protein L5	AK032778|Rpl5|100503670|ribosomal protein L5	AK152381|Rpl5|100503670|ribosomal protein L5	AK008489|Rpl5|100503670|ribosomal protein L5	AK169313|Rpl5|100503670|ribosomal protein L5	AK088036|Rpl5|100503670|ribosomal protein L5	BC005790|Rpl5|100503670|ribosomal protein L5	BC083318|Rpl5|100503670|ribosomal protein L5	BC026934|Rpl5|100503670|ribosomal protein L5	BC091752|Rpl5|100503670|ribosomal protein L5	NM_016980|Rpl5|100503670|ribosomal protein L5	AK166865|Rpl5|100503670|ribosomal protein L5	BC106128|Rpl5|100503670|ribosomal protein L5
mm9_v1_chr7_-_15023845_15023901	0.0239739	NKX3-1.p2	BC031851|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	AK050422|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene
mm9_v1_chr6_-_130287518_130287643	0.0237894	NKX3-1.p2	U56404|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	U56405|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC101952|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC103543|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC103544|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC103545|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC132524|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC132526|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC145192|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	BC145193|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	U10305|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	AK159595|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	U49868|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	NM_010648|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3	U09739|Klra3|16634|killer cell lectin-like receptor, subfamily A, member 3
mm9_v1_chr6_-_40850379_40850385	0.0202667	NKX3-1.p2	BC048599|BC048599|232717|cDNA sequence BC048599	AK075754|BC048599|232717|cDNA sequence BC048599	NM_175020|BC048599|232717|cDNA sequence BC048599
mm9_v1_chr7_+_23307985_23307985	0.0190035	NKX3-1.p2	NM_001166738|Vmn1r104|667135|vomeronasal 1 receptor 104	NM_001166752|Vmn1r152|667504|vomeronasal 1 receptor 152
mm9_v1_chr10_+_93661746_93661761	0.0185476	NKX3-1.p2	BC086922|Ndufa12|66414|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	AK010460|Ndufa12|66414|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	NM_025551|Ndufa12|66414|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
mm9_v1_chr2_+_32583221_32583245	0.0175768	NKX3-1.p2	AK042709|Sh2d3c|27387|SH2 domain containing 3C	AK085885|Sh2d3c|27387|SH2 domain containing 3C	AK135231|Sh2d3c|27387|SH2 domain containing 3C	AB030442|Sh2d3c|27387|SH2 domain containing 3C
mm9_v1_chr7_-_23014502_23014502	0.0147792	NKX3-1.p2	NM_001166742|Vmn1r118|667259|vomeronasal 1 receptor 118	NM_001167150|Gm8453|667094|predicted gene 8453	NM_001167151|Gm4498|100043523|predicted gene 4498
mm9_v1_chr13_-_67407347_67407402	0.0126637	NKX3-1.p2	NM_001003666|Zfp457|431706|zinc finger protein 457
mm9_v1_chr7_+_20593371_20593373	0.0122514	NKX3-1.p2	AY596196|Nlrp9b|243874|NLR family, pyrin domain containing 9B	NM_194058|Nlrp9b|243874|NLR family, pyrin domain containing 9B	BC141249|Nlrp9b|243874|NLR family, pyrin domain containing 9B
mm9_v1_chr1_-_174825081_174825085	0.0121509	NKX3-1.p2	BC061125|Apcs|20219|serum amyloid P-component
mm9_v1_chr10_+_27794625_27794662	0.0112732	NKX3-1.p2	NM_008983|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	AK078614|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	BC138376|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	BC145261|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	AK083006|Ptprk|19272|protein tyrosine phosphatase, receptor type, K
mm9_v1_chr3_+_81800843_81800866	0.0109658	NKX3-1.p2	NM_021370|Accn5|58170|amiloride-sensitive cation channel 5, intestinal	Y19035|Accn5|58170|amiloride-sensitive cation channel 5, intestinal
mm9_v1_chr14_+_51823364_51823369	0.0107099	NKX3-1.p2	NM_001017422|Ear4|53877|eosinophil-associated, ribonuclease A family, member 4	NM_017389|Ear14|503847|eosinophil-associated, ribonuclease A family, member 14
mm9_v1_chr16_+_17331507_17331521	0.0104463	NKX3-1.p2	BC089610|Serpind1|15160|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm9_v1_chr11_-_101278690_101278747	0.0101026	NKX3-1.p2	AK168281|Aarsd1|69684|alanyl-tRNA synthetase domain containing 1	AK136332|Aarsd1|69684|alanyl-tRNA synthetase domain containing 1	AK078016|Aarsd1|69684|alanyl-tRNA synthetase domain containing 1	BC005711|Aarsd1|69684|alanyl-tRNA synthetase domain containing 1	NM_144829|Aarsd1|69684|alanyl-tRNA synthetase domain containing 1
mm9_v1_chr7_-_23156057_23156057	0.00832575	NKX3-1.p2	NM_001166713|Gm5728|435949|predicted gene 5728	NM_001166751|Gm8660|667485|predicted gene 8660
mm9_v1_chr3_+_85378033_85378116	0.00813179	NKX3-1.p2	AK166231|Pet112l|229487|PET112-like (yeast)	AK053978|Pet112l|229487|PET112-like (yeast)	AK081800|Pet112l|229487|PET112-like (yeast)	BC005709|Pet112l|229487|PET112-like (yeast)	AK034702|Pet112l|229487|PET112-like (yeast)	NM_144896|Pet112l|229487|PET112-like (yeast)	AK028193|Pet112l|229487|PET112-like (yeast)	AK134831|Pet112l|229487|PET112-like (yeast)
mm9_v1_chr6_+_123974775_123974775	0.0063807	NKX3-1.p2	AF053985|Vmn2r26|56552|vomeronasal 2, receptor 26	AY426342|Vmn2r26|56552|vomeronasal 2, receptor 26	NM_019917|Vmn2r26|56552|vomeronasal 2, receptor 26
mm9_v1_chr19_-_39815529_39815559	0.00637785	NKX3-1.p2	BC019468|Cyp2c68|433247|cytochrome P450, family 2, subfamily c, polypeptide 68
mm9_v1_chr18_+_37581071_37581102	0.0059802	NKX3-1.p2	AK078189|Pcdhb11|93882|protocadherin beta 11	NM_053136|Pcdhb11|93882|protocadherin beta 11	AK160803|Pcdhb11|93882|protocadherin beta 11
mm9_v1_chrX_+_35954355_35954475	0.00538394	NKX3-1.p2	AK138385|Mcts1|68995|malignant T cell amplified sequence 1	BC037103|Mcts1|68995|malignant T cell amplified sequence 1
mm9_v1_chr6_-_123803207_123803207	0.00428008	NKX3-1.p2	NM_001104641|Vmn2r25|545874|vomeronasal 2, receptor 25
mm9_v1_chr16_+_17331463_17331501	0.00309387	NKX3-1.p2	NM_008223|Serpind1|15160|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm9_v1_chr2_-_173053287_173053316	0.00294103	NKX3-1.p2	AK077382|Pmepa1|65112|prostate transmembrane protein, androgen induced 1
mm9_v1_chr5_-_111239017_111239099	0.00256836	NKX3-1.p2	BC059835|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK148317|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK156534|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	BC057121|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	NM_009469|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)
mm9_v1_chr9_-_22272576_22272657	0.00111915	NKX3-1.p2	BC048480|rp9|55934|retinitis pigmentosa 9 (human)
mm9_v1_chr1_+_95582188_95582371	0.000564172	NKX3-1.p2	AK156243|Bok|51800|BCL2-related ovarian killer protein	NM_016778|Bok|51800|BCL2-related ovarian killer protein	AF027707|Bok|51800|BCL2-related ovarian killer protein	AK171258|Bok|51800|BCL2-related ovarian killer protein	BC030069|Bok|51800|BCL2-related ovarian killer protein	AK168373|Bok|51800|BCL2-related ovarian killer protein
mm9_v1_chr2_-_35972131_35972337	0.000476138	NKX3-1.p2	AK220096|Rbm18|67889|RNA binding motif protein 18
