mm9_v1_chr8_-_112102946_112102953	51.0244	PAX6.p2	BC138872|Hp|15439|haptoglobin	M96827|Hp|15439|haptoglobin
mm9_v1_chr8_-_112102961_112102972	49.7998	PAX6.p2	AK159676|Hp|15439|haptoglobin	S67972|Hp|15439|haptoglobin	AK150430|Hp|15439|haptoglobin	AK150830|Hp|15439|haptoglobin	AK152295|Hp|15439|haptoglobin	AK152698|Hp|15439|haptoglobin
mm9_v1_chr8_-_112103065_112103072	49.2773	PAX6.p2	NM_017370|Hp|15439|haptoglobin
mm9_v1_chr10_-_127613494_127613534	7.33959	PAX6.p2	BC021627|Rbms2|56516|RNA binding motif, single stranded interacting protein 2	AB026583|Rbms2|56516|RNA binding motif, single stranded interacting protein 2	AK207205|Rbms2|56516|RNA binding motif, single stranded interacting protein 2	AK054482|Rbms2|56516|RNA binding motif, single stranded interacting protein 2
mm9_v1_chr10_-_127613623_127613661	7.11252	PAX6.p2	NM_019711|Rbms2|56516|RNA binding motif, single stranded interacting protein 2
mm9_v1_chr2_-_6110280_6110381	6.11428	PAX6.p2	AK209830|Echdc3|67856|enoyl Coenzyme A hydratase domain containing 3
mm9_v1_chr1_+_51346086_51346100	4.95136	PAX6.p2	AK084096|Sdpr|20324|serum deprivation response
mm9_v1_chr3_+_142364014_142364083	4.4767	PAX6.p2	AK145623|Ccbl2|229905|cysteine conjugate-beta lyase 2	AF363737|Ccbl2|229905|cysteine conjugate-beta lyase 2	AK049569|Ccbl2|229905|cysteine conjugate-beta lyase 2	NM_173763|Ccbl2|229905|cysteine conjugate-beta lyase 2	BC085287|Ccbl2|229905|cysteine conjugate-beta lyase 2
mm9_v1_chrX_+_68463941_68463941	3.52677	PAX6.p2	AK016445|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164190|Mtm1|17772|X-linked myotubular myopathy gene 1
mm9_v1_chr1_-_167865030_167865141	3.41614	PAX6.p2	AJ296212|Pou2f1|18986|POU domain, class 2, transcription factor 1	NM_198933|Pou2f1|18986|POU domain, class 2, transcription factor 1	NM_198934|Pou2f1|18986|POU domain, class 2, transcription factor 1	AJ489475|Pou2f1|18986|POU domain, class 2, transcription factor 1	AJ489474|Pou2f1|18986|POU domain, class 2, transcription factor 1	X56230|Pou2f1|18986|POU domain, class 2, transcription factor 1
mm9_v1_chr18_+_54113094_54113152	3.1921	PAX6.p2	AJ279839|Csnk1g3|70425|casein kinase 1, gamma 3
mm9_v1_chr5_-_17341512_17341522	3.02889	PAX6.p2	AK052825|Cd36|12491|CD36 antigen
mm9_v1_chr14_+_32481114_32481230	2.9783	PAX6.p2	AK189055|Btd|26363|biotinidase
mm9_v1_chr8_+_47576483_47576510	2.66812	PAX6.p2	AK161189|Acsl1|14081|acyl-CoA synthetase long-chain family member 1
mm9_v1_chr1_+_51345952_51345993	2.04043	PAX6.p2	AK035324|Sdpr|20324|serum deprivation response	BC027005|Sdpr|20324|serum deprivation response	NM_138741|Sdpr|20324|serum deprivation response	AK132324|Sdpr|20324|serum deprivation response
mm9_v1_chr1_+_89516886_89517022	1.99986	PAX6.p2	NM_001110192|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	NM_001110193|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	NM_010566|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	U39203|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	AK143560|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	U52044|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	AK162401|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	AF228679|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	U51742|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	AF125996|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	BC108328|Inpp5d|16331|inositol polyphosphate-5-phosphatase D
mm9_v1_chr11_+_79845841_79845980	1.76067	PAX6.p2	AK076010|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)
mm9_v1_chr2_+_69508174_69508176	1.66206	PAX6.p2	AK132646|Kbtbd10|228003|kelch repeat and BTB (POZ) domain containing 10	NM_001081087|Kbtbd10|228003|kelch repeat and BTB (POZ) domain containing 10
mm9_v1_chr1_+_19202046_19202134	1.61807	PAX6.p2	AK032045|Tcfap2b|21419|transcription factor AP-2 beta	NM_001025305|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr7_+_135390325_135390446	1.49036	PAX6.p2	DQ143891|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	BC056362|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	NM_009365|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1
mm9_v1_chr16_+_36081360_36081360	1.46142	PAX6.p2	NM_001159422|Ccdc58|381045|coiled-coil domain containing 58
mm9_v1_chr14_+_41918624_41918669	1.41099	PAX6.p2	AK153832|Mat1a|11720|methionine adenosyltransferase I, alpha	AK149542|Mat1a|11720|methionine adenosyltransferase I, alpha	L13622|Mat1a|11720|methionine adenosyltransferase I, alpha	BC011211|Mat1a|11720|methionine adenosyltransferase I, alpha	NM_133653|Mat1a|11720|methionine adenosyltransferase I, alpha
mm9_v1_chr4_+_48676385_48676493	1.386	PAX6.p2	BC089601|Murc|68016|muscle-related coiled-coil protein	NM_026509|Murc|68016|muscle-related coiled-coil protein	AK009073|Murc|68016|muscle-related coiled-coil protein	AK009691|Murc|68016|muscle-related coiled-coil protein	EU487254|Murc|68016|muscle-related coiled-coil protein
mm9_v1_chr17_-_27327042_27327306	1.30283	PAX6.p2	AK217086|Lemd2|224640|LEM domain containing 2	AK212367|Lemd2|224640|LEM domain containing 2
mm9_v1_chr11_+_121098532_121098610	1.23508	PAX6.p2	NM_026272|Narf|67608|nuclear prelamin A recognition factor	AK076232|Narf|67608|nuclear prelamin A recognition factor	AK081305|Narf|67608|nuclear prelamin A recognition factor	AK013432|Narf|67608|nuclear prelamin A recognition factor	BC016090|Narf|67608|nuclear prelamin A recognition factor
mm9_v1_chr13_-_93258004_93258035	1.09525	PAX6.p2	AK134948|Zfyve16|218441|zinc finger, FYVE domain containing 16
mm9_v1_chr11_-_43650152_43650304	1.00219	PAX6.p2	Y12738|Adra1b|11548|adrenergic receptor, alpha 1b
mm9_v1_chr19_-_34240392_34240542	0.884382	PAX6.p2	BC003460|Ankrd22|52024|ankyrin repeat domain 22	AK017408|Ankrd22|52024|ankyrin repeat domain 22	AK037242|Ankrd22|52024|ankyrin repeat domain 22	AK017360|Ankrd22|52024|ankyrin repeat domain 22	NM_024204|Ankrd22|52024|ankyrin repeat domain 22	AK012869|Ankrd22|52024|ankyrin repeat domain 22
mm9_v1_chr8_-_95603838_95603915	0.868403	PAX6.p2	NM_001081372|Ces1b|382044|carboxylesterase 1B
mm9_v1_chr8_-_95655156_95655184	0.84485	PAX6.p2	AF034435|Ces1c|13884|carboxylesterase 1C	BC028907|Ces1c|13884|carboxylesterase 1C	M57960|Ces1c|13884|carboxylesterase 1C	AK050444|Ces1c|13884|carboxylesterase 1C	NM_007954|Ces1c|13884|carboxylesterase 1C
mm9_v1_chrX_-_75336699_75336712	0.807635	PAX6.p2	BC125514|Obp1a|18249|odorant binding protein Ia	BC125516|Obp1a|18249|odorant binding protein Ia	AK017455|Obp1a|18249|odorant binding protein Ia	NM_008754|Obp1a|18249|odorant binding protein Ia
mm9_v1_chr5_-_38871369_38871544	0.78729	PAX6.p2	AF490463|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	AK037093|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	AK172234|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	AK156740|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	AF469480|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	NM_001102414|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	NM_001102415|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9
mm9_v1_chr9_+_89094110_89094142	0.768811	PAX6.p2	BC116241|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b	NM_007534|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b	BC028762|Bcl2a1a|12044|B-cell leukemia/lymphoma 2 related protein A1a	AK138369|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b	BC100462|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b	AK152200|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b
mm9_v1_chr6_-_122560002_122560015	0.749152	PAX6.p2	BC103565|Gdf3|14562|growth differentiation factor 3	BC101963|Gdf3|14562|growth differentiation factor 3	BC101964|Gdf3|14562|growth differentiation factor 3	BC101965|Gdf3|14562|growth differentiation factor 3	AK082877|Gdf3|14562|growth differentiation factor 3	AK146174|Gdf3|14562|growth differentiation factor 3	AK167962|Gdf3|14562|growth differentiation factor 3
mm9_v1_chr3_+_144233390_144233449	0.732279	PAX6.p2	NM_053102|Sep15|93684|selenoprotein	AF288740|Sep15|93684|selenoprotein
mm9_v1_chr16_+_95479164_95479384	0.726483	PAX6.p2	AK165436|Kcnj15|16516|potassium inwardly-rectifying channel, subfamily J, member 15	AK165346|Kcnj15|16516|potassium inwardly-rectifying channel, subfamily J, member 15	NM_001039056|Kcnj15|16516|potassium inwardly-rectifying channel, subfamily J, member 15	NM_001039057|Kcnj15|16516|potassium inwardly-rectifying channel, subfamily J, member 15	NM_019664|Kcnj15|16516|potassium inwardly-rectifying channel, subfamily J, member 15	AJ012368|Kcnj15|16516|potassium inwardly-rectifying channel, subfamily J, member 15	BC010794|Kcnj15|16516|potassium inwardly-rectifying channel, subfamily J, member 15	BC057915|Kcnj15|16516|potassium inwardly-rectifying channel, subfamily J, member 15
mm9_v1_chr3_+_144233654_144233696	0.67285	PAX6.p2	AK159085|Sep15|93684|selenoprotein	BC019792|Sep15|93684|selenoprotein	AK020419|Sep15|93684|selenoprotein	AK159353|Sep15|93684|selenoprotein
mm9_v1_chr5_+_76612903_76613006	0.639325	PAX6.p2	NM_011626|Tmem165|21982|transmembrane protein 165	BC037638|Tmem165|21982|transmembrane protein 165	AK004829|Tmem165|21982|transmembrane protein 165	M23568|Tmem165|21982|transmembrane protein 165
mm9_v1_chr11_-_17847399_17847495	0.621567	PAX6.p2	AK018594|Etaa1|68145|Ewing's tumor-associated antigen 1
mm9_v1_chr1_-_182160174_182160194	0.559083	PAX6.p2	U57325|Psen2|19165|presenilin 2
mm9_v1_chr8_+_112790866_112790890	0.540063	PAX6.p2	AK043971|Hydin|244653|hydrocephalus inducing	AY173049|Hydin|244653|hydrocephalus inducing	NM_172916|Hydin|244653|hydrocephalus inducing	AK142981|Hydin|244653|hydrocephalus inducing
mm9_v1_chr16_+_32271553_32271694	0.472848	PAX6.p2	AK009281|2310010M20Rik|69576|RIKEN cDNA 2310010M20 gene	NM_183283|2310010M20Rik|69576|RIKEN cDNA 2310010M20 gene
mm9_v1_chr9_+_56958585_56958640	0.469206	PAX6.p2	AK136972|Sin3a|20466|transcriptional regulator, SIN3A (yeast)
mm9_v1_chr6_-_51413182_51413233	0.420332	PAX6.p2	AK049735|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr7_+_27593910_27593945	0.344549	PAX6.p2	BC046321|Cyp2g1|13108|cytochrome P450, family 2, subfamily g, polypeptide 1	AK014160|Cyp2g1|13108|cytochrome P450, family 2, subfamily g, polypeptide 1	BC058222|Cyp2g1|13108|cytochrome P450, family 2, subfamily g, polypeptide 1	L81171|Cyp2g1|13108|cytochrome P450, family 2, subfamily g, polypeptide 1	NM_013809|Cyp2g1|13108|cytochrome P450, family 2, subfamily g, polypeptide 1
mm9_v1_chr14_+_80400057_80400108	0.194647	PAX6.p2	BC141127|Olfm4|380924|olfactomedin 4	BC145436|Olfm4|380924|olfactomedin 4	AK133536|Olfm4|380924|olfactomedin 4	NM_001030294|Olfm4|380924|olfactomedin 4
mm9_v1_chr1_+_31279683_31279691	0.177818	PAX6.p2	AK015858|4930521A18Rik|74708|RIKEN cDNA 4930521A18 gene	NM_029062|4930521A18Rik|74708|RIKEN cDNA 4930521A18 gene	BC107262|4930521A18Rik|74708|RIKEN cDNA 4930521A18 gene
mm9_v1_chr11_-_120668581_120668636	0.132553	PAX6.p2	AK078721|Fasn|14104|fatty acid synthase
mm9_v1_chr7_-_48755259_48755259	0.120831	PAX6.p2	AK164198|AW146154|101835|expressed sequence AW146154	NM_001033530|AW146154|101835|expressed sequence AW146154
mm9_v1_chr1_-_4486443_4486496	0.119205	PAX6.p2	D49474|Sox17|20671|SRY-box containing gene 17	AK004781|Sox17|20671|SRY-box containing gene 17	NM_011441|Sox17|20671|SRY-box containing gene 17
mm9_v1_chr3_-_144232768_144232936	0.0791054	PAX6.p2	AF169243|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1	AF060178|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1	BC059008|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1
mm9_v1_chr7_-_109643286_109643286	0.0667732	PAX6.p2	BC106987|Olfr545|258837|olfactory receptor 545	BC128265|Olfr545|258837|olfactory receptor 545	BC128266|Olfr545|258837|olfactory receptor 545	NM_146840|Olfr545|258837|olfactory receptor 545
mm9_v1_chr2_-_89892475_89892478	0.0156537	PAX6.p2	BC111111|Olfr140|57272|olfactory receptor 140	BC141888|Olfr140|57272|olfactory receptor 140	NM_020515|Olfr140|57272|olfactory receptor 140
mm9_v1_chr15_+_102044730_102044866	0.00201219	PAX6.p2	AK004098|Zfp740|68744|zinc finger protein 740
