mm9_v1_chr4_-_87679175_87679310	8.2407	UCAAGUA	BC021420|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AF372456|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_027326|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr2_+_11093936_11094008	7.94572	UCAAGUA	AK037664|Prkcq|18761|protein kinase C, theta	D11091|Prkcq|18761|protein kinase C, theta	NM_008859|Prkcq|18761|protein kinase C, theta
mm9_v1_chr4_-_40800995_40801058	7.8627	UCAAGUA	BC026824|B4galt1|14595|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	J03880|B4galt1|14595|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	AK154393|B4galt1|14595|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	BC053006|B4galt1|14595|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	NM_022305|B4galt1|14595|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1
mm9_v1_chr6_-_127100954_127101069	7.68898	UCAAGUA	M86182|Ccnd2|12444|cyclin D2	AK007904|Ccnd2|12444|cyclin D2	AK011412|Ccnd2|12444|cyclin D2	AK077367|Ccnd2|12444|cyclin D2	AK147345|Ccnd2|12444|cyclin D2	AK160751|Ccnd2|12444|cyclin D2	AK168954|Ccnd2|12444|cyclin D2	BC049086|Ccnd2|12444|cyclin D2	M83749|Ccnd2|12444|cyclin D2	NM_009829|Ccnd2|12444|cyclin D2
mm9_v1_chr4_+_11083585_11083598	7.1722	UCAAGUA	AJ131776|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AY034611|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AY034612|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	NM_021897|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AK054214|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AK142321|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1
mm9_v1_chr6_-_47544925_47545028	7.02398	UCAAGUA	BC003772|Ezh2|14056|enhancer of zeste homolog 2 (Drosophila)	BC016391|Ezh2|14056|enhancer of zeste homolog 2 (Drosophila)	BC079538|Ezh2|14056|enhancer of zeste homolog 2 (Drosophila)	AK220174|Ezh2|14056|enhancer of zeste homolog 2 (Drosophila)	U52951|Ezh2|14056|enhancer of zeste homolog 2 (Drosophila)	AK157853|Ezh2|14056|enhancer of zeste homolog 2 (Drosophila)	NM_001146689|Ezh2|14056|enhancer of zeste homolog 2 (Drosophila)	NM_007971|Ezh2|14056|enhancer of zeste homolog 2 (Drosophila)
mm9_v1_chr18_-_6490848_6490911	6.65212	UCAAGUA	AK040254|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	NM_027497|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	BC059708|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)
mm9_v1_chr2_-_169956719_169956719	6.31607	UCAAGUA	AK156475|Zfp217|228913|zinc finger protein 217	NM_001033299|Zfp217|228913|zinc finger protein 217
mm9_v1_chr8_-_127245800_127245897	6.02089	UCAAGUA	AK212172|Ttc13|234875|tetratricopeptide repeat domain 13	BC079851|Ttc13|234875|tetratricopeptide repeat domain 13	BC072577|Ttc13|234875|tetratricopeptide repeat domain 13	AK148102|Ttc13|234875|tetratricopeptide repeat domain 13	AK144842|Ttc13|234875|tetratricopeptide repeat domain 13	NM_145607|Ttc13|234875|tetratricopeptide repeat domain 13	AK051200|Ttc13|234875|tetratricopeptide repeat domain 13	AK160894|Ttc13|234875|tetratricopeptide repeat domain 13
mm9_v1_chr13_+_49639799_49639811	5.79537	UCAAGUA	NM_001172481|Aspn|66695|asporin	NM_025711|Aspn|66695|asporin
mm9_v1_chr13_-_40825789_40825811	5.6705	UCAAGUA	U17287|Tcfap2a|21418|transcription factor AP-2, alpha	AK053704|Tcfap2a|21418|transcription factor AP-2, alpha	NM_001122948|Tcfap2a|21418|transcription factor AP-2, alpha
mm9_v1_chr5_-_147888037_147888155	5.4852	UCAAGUA	AK140320|Lnx2|140887|ligand of numb-protein X 2	AK170146|Lnx2|140887|ligand of numb-protein X 2	BC117938|Lnx2|140887|ligand of numb-protein X 2	BC117937|Lnx2|140887|ligand of numb-protein X 2	AF401681|Lnx2|140887|ligand of numb-protein X 2	BC090665|Lnx2|140887|ligand of numb-protein X 2	AK047053|Lnx2|140887|ligand of numb-protein X 2	AK036218|Lnx2|140887|ligand of numb-protein X 2	NM_080795|Lnx2|140887|ligand of numb-protein X 2
mm9_v1_chr4_-_87452140_87452217	5.44782	UCAAGUA	AK147009|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK008707|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK019458|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_029931|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr14_-_119105434_119105469	5.26226	UCAAGUA	NM_001033336|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4	NM_001163676|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4
mm9_v1_chr2_-_169968174_169968177	5.10373	UCAAGUA	AK139547|Zfp217|228913|zinc finger protein 217	NM_001159683|Zfp217|228913|zinc finger protein 217	AK163381|Zfp217|228913|zinc finger protein 217
mm9_v1_chr2_+_172375092_172375143	5.09771	UCAAGUA	NM_009335|Tcfap2c|21420|transcription factor AP-2, gamma	X94694|Tcfap2c|21420|transcription factor AP-2, gamma	AK145166|Tcfap2c|21420|transcription factor AP-2, gamma
mm9_v1_chr14_-_119076152_119076152	5.04171	UCAAGUA	AK052778|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4	NM_001163675|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4
mm9_v1_chr2_+_153475189_153475352	4.98887	UCAAGUA	NM_001003960|Dnmt3b|13436|DNA methyltransferase 3B	NM_001003961|Dnmt3b|13436|DNA methyltransferase 3B	NM_001003963|Dnmt3b|13436|DNA methyltransferase 3B	NM_001122997|Dnmt3b|13436|DNA methyltransferase 3B	NM_010068|Dnmt3b|13436|DNA methyltransferase 3B	AF151969|Dnmt3b|13436|DNA methyltransferase 3B	AF151970|Dnmt3b|13436|DNA methyltransferase 3B	AF151971|Dnmt3b|13436|DNA methyltransferase 3B	AF151972|Dnmt3b|13436|DNA methyltransferase 3B	AF151973|Dnmt3b|13436|DNA methyltransferase 3B	AF151974|Dnmt3b|13436|DNA methyltransferase 3B	AF151975|Dnmt3b|13436|DNA methyltransferase 3B	AF151976|Dnmt3b|13436|DNA methyltransferase 3B	AF068626|Dnmt3b|13436|DNA methyltransferase 3B	AF068627|Dnmt3b|13436|DNA methyltransferase 3B	AF068628|Dnmt3b|13436|DNA methyltransferase 3B	AY078427|Dnmt3b|13436|DNA methyltransferase 3B	BC105677|Dnmt3b|13436|DNA methyltransferase 3B	BC105922|Dnmt3b|13436|DNA methyltransferase 3B
mm9_v1_chr18_+_58038278_58038331	4.98364	UCAAGUA	NM_009194|Slc12a2|20496|solute carrier family 12, member 2	U13174|Slc12a2|20496|solute carrier family 12, member 2
mm9_v1_chr13_-_46823191_46823231	4.96761	UCAAGUA	AK086847|Nup153|218210|nucleoporin 153	NM_175749|Nup153|218210|nucleoporin 153
mm9_v1_chr10_-_62342761_62342761	4.81323	UCAAGUA	GU079948|Tet1|52463|tet oncogene 1	NM_027384|Tet1|52463|tet oncogene 1
mm9_v1_chr8_-_60131768_60131885	4.75499	UCAAGUA	AF349573|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK030683|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK033427|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK036523|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	BC052461|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK041791|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_001167981|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_144731|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7
mm9_v1_chr2_+_172376490_172376538	4.60719	UCAAGUA	NM_001159696|Tcfap2c|21420|transcription factor AP-2, gamma	AK145603|Tcfap2c|21420|transcription factor AP-2, gamma
mm9_v1_chr4_+_15192892_15192977	4.4332	UCAAGUA	AK156282|Tmem64|100201|transmembrane protein 64	NM_181401|Tmem64|100201|transmembrane protein 64	AY147882|Tmem64|100201|transmembrane protein 64	BC030341|Tmem64|100201|transmembrane protein 64
mm9_v1_chr13_+_112476313_112476385	4.4279	UCAAGUA	AK147427|Mier3|218613|mesoderm induction early response 1, family member 3	NM_172593|Mier3|218613|mesoderm induction early response 1, family member 3
mm9_v1_chr7_+_90015842_90015842	4.40255	UCAAGUA	NM_175366|Mex3b|108797|mex3 homolog B (C. elegans)
mm9_v1_chr16_-_32079317_32079415	4.38209	UCAAGUA	BC086650|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2	NM_177326|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2
mm9_v1_chr4_+_140857147_140857182	4.34724	UCAAGUA	AK137704|Epha2|13836|Eph receptor A2	AK144202|Epha2|13836|Eph receptor A2	NM_010139|Epha2|13836|Eph receptor A2	U07634|Epha2|13836|Eph receptor A2	BC140960|Epha2|13836|Eph receptor A2	X78339|Epha2|13836|Eph receptor A2
mm9_v1_chr1_+_59030365_59030647	4.30666	UCAAGUA	AK140272|Stradb|227154|STE20-related kinase adaptor beta	NM_172656|Stradb|227154|STE20-related kinase adaptor beta	AK036678|Stradb|227154|STE20-related kinase adaptor beta	BC055814|Stradb|227154|STE20-related kinase adaptor beta	AK046790|Stradb|227154|STE20-related kinase adaptor beta	AK080096|Stradb|227154|STE20-related kinase adaptor beta	AK035207|Stradb|227154|STE20-related kinase adaptor beta	AK086974|Stradb|227154|STE20-related kinase adaptor beta	BC037003|Stradb|227154|STE20-related kinase adaptor beta	BC060956|Stradb|227154|STE20-related kinase adaptor beta	AK146079|Stradb|227154|STE20-related kinase adaptor beta	AB057666|Stradb|227154|STE20-related kinase adaptor beta	AB057667|Stradb|227154|STE20-related kinase adaptor beta
mm9_v1_chr14_-_102008407_102008407	4.29212	UCAAGUA	AK039337|Tbc1d4|210789|TBC1 domain family, member 4	NM_001081278|Tbc1d4|210789|TBC1 domain family, member 4
mm9_v1_chr11_-_5344795_5344912	4.27865	UCAAGUA	AK163639|Znrf3|407821|zinc and ring finger 3	NM_001080924|Znrf3|407821|zinc and ring finger 3
mm9_v1_chr2_+_92024338_92024494	4.2739	UCAAGUA	NM_138755|Phf21a|192285|PHD finger protein 21A	AB105178|Phf21a|192285|PHD finger protein 21A	AK089411|Phf21a|192285|PHD finger protein 21A	BC019181|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr13_-_40829082_40829191	4.22402	UCAAGUA	AB221578|Tcfap2a|21418|transcription factor AP-2, alpha	U17286|Tcfap2a|21418|transcription factor AP-2, alpha	AK145772|Tcfap2a|21418|transcription factor AP-2, alpha	X74216|Tcfap2a|21418|transcription factor AP-2, alpha	BC007471|Tcfap2a|21418|transcription factor AP-2, alpha	U17285|Tcfap2a|21418|transcription factor AP-2, alpha	NM_011547|Tcfap2a|21418|transcription factor AP-2, alpha
mm9_v1_chr2_+_27741864_27742035	4.15932	UCAAGUA	NM_015734|Col5a1|12831|collagen, type V, alpha 1
mm9_v1_chr10_+_96079634_96079769	4.04632	UCAAGUA	NM_007569|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK162764|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK149547|Btg1|12226|B-cell translocation gene 1, anti-proliferative	BC018309|Btg1|12226|B-cell translocation gene 1, anti-proliferative	L16846|Btg1|12226|B-cell translocation gene 1, anti-proliferative	BC006834|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK181728|Btg1|12226|B-cell translocation gene 1, anti-proliferative
mm9_v1_chr4_-_55545337_55545348	4.04209	UCAAGUA	U70662|Klf4|16600|Kruppel-like factor 4 (gut)	AK144942|Klf4|16600|Kruppel-like factor 4 (gut)	AK155343|Klf4|16600|Kruppel-like factor 4 (gut)	NM_010637|Klf4|16600|Kruppel-like factor 4 (gut)
mm9_v1_chr16_+_44173356_44173509	4.04143	UCAAGUA	NM_001029889|Gm608|207806|predicted gene 608
mm9_v1_chr19_-_41922577_41922621	4.03856	UCAAGUA	BC034214|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	BC085510|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	AK081171|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	NM_177603|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2
mm9_v1_chr17_+_15841889_15842002	4.00986	UCAAGUA	AK042202|Chd1|12648|chromodomain helicase DNA binding protein 1	NM_007690|Chd1|12648|chromodomain helicase DNA binding protein 1	AK049686|Chd1|12648|chromodomain helicase DNA binding protein 1	AK140386|Chd1|12648|chromodomain helicase DNA binding protein 1	AK142471|Chd1|12648|chromodomain helicase DNA binding protein 1	AK021188|Chd1|12648|chromodomain helicase DNA binding protein 1
mm9_v1_chr2_+_119500777_119500991	3.98253	UCAAGUA	NM_030112|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC048535|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC022717|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC038032|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117848|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117849|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK177377|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr15_+_66409094_66409201	3.94606	UCAAGUA	AK047044|Phf20l1|239510|PHD finger protein 20-like 1	AK032638|Phf20l1|239510|PHD finger protein 20-like 1	NM_001081409|Phf20l1|239510|PHD finger protein 20-like 1	BC082777|Phf20l1|239510|PHD finger protein 20-like 1	BC052212|Phf20l1|239510|PHD finger protein 20-like 1	BC061492|Phf20l1|239510|PHD finger protein 20-like 1
mm9_v1_chr17_+_75404865_75404880	3.91369	UCAAGUA	NM_019919|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chr18_+_32322742_32322855	3.8337	UCAAGUA	AK036364|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	NM_011946|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	AK143367|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	AK050667|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	U43186|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2
mm9_v1_chr13_+_13529868_13529883	3.82949	UCAAGUA	NM_010917|Nid1|18073|nidogen 1	BC052939|Nid1|18073|nidogen 1
mm9_v1_chr11_+_72420705_72421072	3.82946	UCAAGUA	NM_025985|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	BC065083|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK083029|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK012539|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK013902|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK167472|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK197264|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)
mm9_v1_chr10_+_69559860_69560052	3.82516	UCAAGUA	NM_001111121|Ccdc6|76551|coiled-coil domain containing 6
mm9_v1_chr15_+_80541675_80541764	3.80796	UCAAGUA	AK048628|Tnrc6b|213988|trinucleotide repeat containing 6b	NM_144812|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr4_-_133189327_133189466	3.79973	UCAAGUA	NM_001017968|Zdhhc18|503610|zinc finger, DHHC domain containing 18
mm9_v1_chr1_+_140860285_140860402	3.77263	UCAAGUA	NM_001166501|Dennd1b|329260|DENN/MADD domain containing 1B	BC042698|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr16_-_45844409_45844495	3.74417	UCAAGUA	AK165251|Phldb2|208177|pleckstrin homology-like domain, family B, member 2	AF506821|Phldb2|208177|pleckstrin homology-like domain, family B, member 2	NM_153412|Phldb2|208177|pleckstrin homology-like domain, family B, member 2
mm9_v1_chr4_+_116393559_116393581	3.74087	UCAAGUA	AK047755|Tesk2|230661|testis-specific kinase 2	NM_146151|Tesk2|230661|testis-specific kinase 2	AK031814|Tesk2|230661|testis-specific kinase 2	AK053368|Tesk2|230661|testis-specific kinase 2	BC029766|Tesk2|230661|testis-specific kinase 2
mm9_v1_chr15_-_50721552_50721725	3.69285	UCAAGUA	BC099962|Trps1|83925|trichorhinophalangeal syndrome I (human)	AF346836|Trps1|83925|trichorhinophalangeal syndrome I (human)	NM_032000|Trps1|83925|trichorhinophalangeal syndrome I (human)
mm9_v1_chr10_+_110182506_110182701	3.63592	UCAAGUA	AK051521|E2f7|52679|E2F transcription factor 7	NM_178609|E2f7|52679|E2F transcription factor 7	AK031078|E2f7|52679|E2F transcription factor 7	AK041481|E2f7|52679|E2F transcription factor 7	AY463359|E2f7|52679|E2F transcription factor 7	AK143686|E2f7|52679|E2F transcription factor 7	BC145429|E2f7|52679|E2F transcription factor 7	BC150772|E2f7|52679|E2F transcription factor 7	AK045040|E2f7|52679|E2F transcription factor 7
mm9_v1_chr2_+_10292073_10292144	3.60063	UCAAGUA	AK147557|Sfmbt2|353282|Scm-like with four mbt domains 2	NM_001198808|Sfmbt2|353282|Scm-like with four mbt domains 2	AK049505|Sfmbt2|353282|Scm-like with four mbt domains 2	AK168444|Sfmbt2|353282|Scm-like with four mbt domains 2
mm9_v1_chr6_+_67216948_67217032	3.57877	UCAAGUA	AK004678|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113564|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113565|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113566|Serbp1|66870|serpine1 mRNA binding protein 1	NM_025814|Serbp1|66870|serpine1 mRNA binding protein 1	AK010860|Serbp1|66870|serpine1 mRNA binding protein 1	AK144764|Serbp1|66870|serpine1 mRNA binding protein 1	AK158095|Serbp1|66870|serpine1 mRNA binding protein 1	AK010851|Serbp1|66870|serpine1 mRNA binding protein 1	AK011051|Serbp1|66870|serpine1 mRNA binding protein 1	AK149505|Serbp1|66870|serpine1 mRNA binding protein 1	AK012390|Serbp1|66870|serpine1 mRNA binding protein 1	AK088278|Serbp1|66870|serpine1 mRNA binding protein 1	AK131990|Serbp1|66870|serpine1 mRNA binding protein 1	AK135473|Serbp1|66870|serpine1 mRNA binding protein 1	AK139670|Serbp1|66870|serpine1 mRNA binding protein 1	AK146418|Serbp1|66870|serpine1 mRNA binding protein 1	AK045190|Serbp1|66870|serpine1 mRNA binding protein 1	BC006030|Serbp1|66870|serpine1 mRNA binding protein 1	BC013665|Serbp1|66870|serpine1 mRNA binding protein 1	BC030502|Serbp1|66870|serpine1 mRNA binding protein 1
mm9_v1_chr6_+_38383918_38383949	3.51574	UCAAGUA	NM_177185|Ubn2|320538|ubinuclein 2	AK013733|Ubn2|320538|ubinuclein 2	BC051458|Ubn2|320538|ubinuclein 2
mm9_v1_chr16_+_33185137_33185252	3.51486	UCAAGUA	BC035278|Osbpl11|106326|oxysterol binding protein-like 11	NM_176840|Osbpl11|106326|oxysterol binding protein-like 11	BC099400|Osbpl11|106326|oxysterol binding protein-like 11
mm9_v1_chr15_-_85864206_85864206	3.4927	UCAAGUA	AF031572|Celsr1|12614|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)	NM_009886|Celsr1|12614|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)
mm9_v1_chr12_+_4924157_4924219	3.45392	UCAAGUA	AK161170|Atad2b|320817|ATPase family, AAA domain containing 2B	NM_001099628|Atad2b|320817|ATPase family, AAA domain containing 2B	AK080580|Atad2b|320817|ATPase family, AAA domain containing 2B	AK085232|Atad2b|320817|ATPase family, AAA domain containing 2B
mm9_v1_chr7_+_73254341_73254400	3.37047	UCAAGUA	AK129255|Chsy1|269941|chondroitin sulfate synthase 1	BC128567|Chsy1|269941|chondroitin sulfate synthase 1	BC153826|Chsy1|269941|chondroitin sulfate synthase 1	BC153827|Chsy1|269941|chondroitin sulfate synthase 1	NM_001081163|Chsy1|269941|chondroitin sulfate synthase 1
mm9_v1_chr6_-_52154455_52154585	3.31745	UCAAGUA	M36604|Hoxa5|15402|homeobox A5	X16840|Hoxa5|15402|homeobox A5	M28021|Hoxa5|15402|homeobox A5	NM_010453|Hoxa5|15402|homeobox A5
mm9_v1_chr2_-_105239368_105239475	3.31367	UCAAGUA	BC049108|Rcn1|19672|reticulocalbin 1	AK159973|Rcn1|19672|reticulocalbin 1	AK017494|Rcn1|19672|reticulocalbin 1	D13003|Rcn1|19672|reticulocalbin 1	AK133971|Rcn1|19672|reticulocalbin 1	NM_009037|Rcn1|19672|reticulocalbin 1
mm9_v1_chr5_-_25004598_25004626	3.31288	UCAAGUA	AK044828|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3	NM_001081383|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3	AK087368|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3
mm9_v1_chr1_+_138027943_138028013	3.29885	UCAAGUA	NM_001039472|Kif21b|16565|kinesin family member 21B
mm9_v1_chr11_-_109334909_109334911	3.28614	UCAAGUA	NM_001029842|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	AK032026|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm9_v1_chr5_+_97426665_97426877	3.22148	UCAAGUA	AY050249|Bmp2k|140780|BMP2 inducible kinase	NM_080708|Bmp2k|140780|BMP2 inducible kinase	AK046752|Bmp2k|140780|BMP2 inducible kinase
mm9_v1_chr5_+_111308801_111308858	3.15064	UCAAGUA	NM_024477|Ttc28|209683|tetratricopeptide repeat domain 28	AK009368|Ttc28|209683|tetratricopeptide repeat domain 28
mm9_v1_chr10_+_42580317_42580598	3.13172	UCAAGUA	NM_172938|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AF397911|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AK034171|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	BC043310|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AK047972|Scml4|268297|sex comb on midleg-like 4 (Drosophila)
mm9_v1_chrX_+_156278399_156278494	3.09168	UCAAGUA	AK028299|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_001135728|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr10_+_114822009_114822046	3.08147	UCAAGUA	AK145652|Zfc3h1|216345|zinc finger, C3H1-type containing	NM_001033261|Zfc3h1|216345|zinc finger, C3H1-type containing
mm9_v1_chr17_+_75578120_75578285	3.07978	UCAAGUA	AK036047|Ltbp1|268977|latent transforming growth factor beta binding protein 1	NM_206958|Ltbp1|268977|latent transforming growth factor beta binding protein 1	AF280604|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chr15_+_96117952_96118007	3.04629	UCAAGUA	AK007269|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)	NM_175251|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)
mm9_v1_chr1_+_40738476_40738556	3.04542	UCAAGUA	BC103685|Slc9a2|226999|solute carrier family 9 (sodium/hydrogen exchanger), member 2	BC104737|Slc9a2|226999|solute carrier family 9 (sodium/hydrogen exchanger), member 2	BC105676|Slc9a2|226999|solute carrier family 9 (sodium/hydrogen exchanger), member 2	NM_001033289|Slc9a2|226999|solute carrier family 9 (sodium/hydrogen exchanger), member 2
mm9_v1_chr7_+_130267398_130267398	3.01058	UCAAGUA	NM_144925|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr5_-_64360058_64360140	2.96587	UCAAGUA	AK133845|Rell1|100532|RELT-like 1	AK159944|Rell1|100532|RELT-like 1	AK161061|Rell1|100532|RELT-like 1	BC031198|Rell1|100532|RELT-like 1	BC066137|Rell1|100532|RELT-like 1	BC066160|Rell1|100532|RELT-like 1	AK140108|Rell1|100532|RELT-like 1	NM_145923|Rell1|100532|RELT-like 1
mm9_v1_chr19_+_53751795_53751795	2.95928	UCAAGUA	AK142175|Rbm20|73713|RNA binding motif protein 20	NM_001170847|Rbm20|73713|RNA binding motif protein 20
mm9_v1_chr13_+_9093121_9093197	2.94323	UCAAGUA	AK080953|Larp4b|217980|La ribonucleoprotein domain family, member 4B	AK160759|Larp4b|217980|La ribonucleoprotein domain family, member 4B	NM_172585|Larp4b|217980|La ribonucleoprotein domain family, member 4B	AK042491|Larp4b|217980|La ribonucleoprotein domain family, member 4B	AK172916|Larp4b|217980|La ribonucleoprotein domain family, member 4B	BC059218|Larp4b|217980|La ribonucleoprotein domain family, member 4B	BC086626|Larp4b|217980|La ribonucleoprotein domain family, member 4B
mm9_v1_chr15_+_80629020_80629144	2.94174	UCAAGUA	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr11_+_57458925_57459050	2.93243	UCAAGUA	AK162424|Galnt10|171212|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	NM_134189|Galnt10|171212|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	AK143714|Galnt10|171212|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	AK159362|Galnt10|171212|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	AK159088|Galnt10|171212|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	BC060617|Galnt10|171212|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	AK131155|Galnt10|171212|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	AK172609|Galnt10|171212|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10
mm9_v1_chr15_-_96529998_96530181	2.92611	UCAAGUA	BC041108|Slc38a2|67760|solute carrier family 38, member 2	BC027259|Slc38a2|67760|solute carrier family 38, member 2	AK129342|Slc38a2|67760|solute carrier family 38, member 2	BC048178|Slc38a2|67760|solute carrier family 38, member 2	NM_175121|Slc38a2|67760|solute carrier family 38, member 2	AK017145|Slc38a2|67760|solute carrier family 38, member 2	AK030917|Slc38a2|67760|solute carrier family 38, member 2	AK031615|Slc38a2|67760|solute carrier family 38, member 2	AK047403|Slc38a2|67760|solute carrier family 38, member 2
mm9_v1_chr15_-_98438063_98438063	2.92415	UCAAGUA	AK147516|Adcy6|11512|adenylate cyclase 6	NM_007405|Adcy6|11512|adenylate cyclase 6
mm9_v1_chr11_-_109334465_109334613	2.89511	UCAAGUA	AK170472|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	BC017129|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	NM_134038|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm9_v1_chr7_+_65913571_65913874	2.8779	UCAAGUA	NM_009728|Atp10a|11982|ATPase, class V, type 10A	AK132174|Atp10a|11982|ATPase, class V, type 10A	AK172149|Atp10a|11982|ATPase, class V, type 10A	AF156549|Atp10a|11982|ATPase, class V, type 10A	BC138356|Atp10a|11982|ATPase, class V, type 10A	BC138357|Atp10a|11982|ATPase, class V, type 10A	AK172972|Atp10a|11982|ATPase, class V, type 10A	AF011337|Atp10a|11982|ATPase, class V, type 10A
mm9_v1_chr17_-_17761403_17761607	2.83875	UCAAGUA	BC120925|Lnpep|240028|leucyl/cystinyl aminopeptidase	BC120926|Lnpep|240028|leucyl/cystinyl aminopeptidase	AK029094|Lnpep|240028|leucyl/cystinyl aminopeptidase	AK036967|Lnpep|240028|leucyl/cystinyl aminopeptidase	NM_172827|Lnpep|240028|leucyl/cystinyl aminopeptidase	BC066791|Lnpep|240028|leucyl/cystinyl aminopeptidase
mm9_v1_chr6_+_149257918_149258112	2.83053	UCAAGUA	NM_026054|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	AK013408|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	AK017376|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	AK220403|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	AK031989|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	AK031797|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	BC139435|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	BC139436|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	AK031526|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	AK079405|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene
mm9_v1_chr18_-_82862111_82862127	2.78515	UCAAGUA	BC138187|Zfp236|329002|zinc finger protein 236	BC145179|Zfp236|329002|zinc finger protein 236	BC145180|Zfp236|329002|zinc finger protein 236	NM_177832|Zfp236|329002|zinc finger protein 236
mm9_v1_chr8_+_128434349_128434353	2.78273	UCAAGUA	AK220424|BC021891|234878|cDNA sequence BC021891	NM_145608|BC021891|234878|cDNA sequence BC021891	BC021891|BC021891|234878|cDNA sequence BC021891
mm9_v1_chr19_+_55816299_55816310	2.77935	UCAAGUA	NM_001142918|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142919|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142920|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142921|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142922|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142923|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_009333|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	BC011397|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box
mm9_v1_chr7_-_141416778_141416785	2.77572	UCAAGUA	D50411|Adam12|11489|a disintegrin and metallopeptidase domain 12 (meltrin alpha)	NM_007400|Adam12|11489|a disintegrin and metallopeptidase domain 12 (meltrin alpha)
mm9_v1_chr3_+_55586431_55586482	2.76477	UCAAGUA	NM_010750|Mab21l1|17116|mab-21-like 1 (C. elegans)	AK043552|Mab21l1|17116|mab-21-like 1 (C. elegans)	AF040945|Mab21l1|17116|mab-21-like 1 (C. elegans)	AF228913|Mab21l1|17116|mab-21-like 1 (C. elegans)	AK032114|Mab21l1|17116|mab-21-like 1 (C. elegans)	BC014750|Mab21l1|17116|mab-21-like 1 (C. elegans)
mm9_v1_chr17_-_43013320_43013409	2.73225	UCAAGUA	BC138374|Cd2ap|12488|CD2-associated protein	BC157901|Cd2ap|12488|CD2-associated protein	AK045218|Cd2ap|12488|CD2-associated protein	NM_009847|Cd2ap|12488|CD2-associated protein
mm9_v1_chrX_+_17739762_17739792	2.72425	UCAAGUA	AK164941|Kdm6a|22289|4lysine (K)-specific demethylase 6A	AK144654|Kdm6a|22289|4lysine (K)-specific demethylase 6A	AK080370|Kdm6a|22289|4lysine (K)-specific demethylase 6A	BC053433|Kdm6a|22289|4lysine (K)-specific demethylase 6A	NM_009483|Kdm6a|22289|4lysine (K)-specific demethylase 6A
mm9_v1_chr13_+_109106530_109106573	2.72347	UCAAGUA	NM_178683|Depdc1b|218581|DEP domain containing 1B	AK077676|Depdc1b|218581|DEP domain containing 1B	BC152330|Depdc1b|218581|DEP domain containing 1B	BC152331|Depdc1b|218581|DEP domain containing 1B	AK083480|Depdc1b|218581|DEP domain containing 1B	AK036550|Depdc1b|218581|DEP domain containing 1B	AK043283|Depdc1b|218581|DEP domain containing 1B
mm9_v1_chr7_-_35841565_35841620	2.69615	UCAAGUA	NM_009884|Cebpg|12611|CCAAT/enhancer binding protein (C/EBP), gamma	S80556|Cebpg|12611|CCAAT/enhancer binding protein (C/EBP), gamma
mm9_v1_chr14_+_14845004_14845173	2.67861	UCAAGUA	AK046679|Atxn7|246103|ataxin 7	NM_139227|Atxn7|246103|ataxin 7	BC137846|Atxn7|246103|ataxin 7
mm9_v1_chr5_-_135870365_135870452	2.6382	UCAAGUA	AF516680|Pom121|107939|nuclear pore membrane protein 121	BC053101|Pom121|107939|nuclear pore membrane protein 121	AK154473|Pom121|107939|nuclear pore membrane protein 121	NM_148932|Pom121|107939|nuclear pore membrane protein 121
mm9_v1_chr3_-_85550130_85550130	2.63151	UCAAGUA	NM_172682|Fam160a1|229488|family with sequence similarity 160, member A1
mm9_v1_chr5_-_66543123_66543228	2.61918	UCAAGUA	AK170082|Rbm47|245945|RNA binding motif protein 47	NM_001127382|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr3_+_85888355_85888355	2.61153	UCAAGUA	NM_001082414|Sh3d19|27059|SH3 domain protein D19
mm9_v1_chr17_+_64950988_64951003	2.54795	UCAAGUA	NM_008549|Man2a1|17158|mannosidase 2, alpha 1	X61172|Man2a1|17158|mannosidase 2, alpha 1	BC138371|Man2a1|17158|mannosidase 2, alpha 1	BC138372|Man2a1|17158|mannosidase 2, alpha 1
mm9_v1_chr9_+_77956998_77957048	2.53368	UCAAGUA	AK154185|Ick|56542|intestinal cell kinase	NM_001163780|Ick|56542|intestinal cell kinase
mm9_v1_chr1_-_121318824_121318824	2.53257	UCAAGUA	AK132352|Inhbb|16324|inhibin beta-B	NM_008381|Inhbb|16324|inhibin beta-B
mm9_v1_chr4_+_32744074_32744093	2.53241	UCAAGUA	AK144722|Mdn1|100019|midasin homolog (yeast)	NM_001081392|Mdn1|100019|midasin homolog (yeast)
mm9_v1_chr10_+_126432666_126432668	2.52541	UCAAGUA	BC025650|Ctdsp2|52468|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	NM_146012|Ctdsp2|52468|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm9_v1_chr1_+_140864297_140864301	2.52026	UCAAGUA	AK155727|Dennd1b|329260|DENN/MADD domain containing 1B	NM_181347|Dennd1b|329260|DENN/MADD domain containing 1B	BC141388|Dennd1b|329260|DENN/MADD domain containing 1B	BC141389|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr6_-_30254273_30254567	2.51275	UCAAGUA	U19854|Ube2h|22214|ubiquitin-conjugating enzyme E2H	BC008517|Ube2h|22214|ubiquitin-conjugating enzyme E2H	AK131688|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_001170345|Gm2058|100039133|predicted gene 2058	AK161414|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_001169576|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_009459|Ube2h|22214|ubiquitin-conjugating enzyme E2H
mm9_v1_chr1_-_79668530_79668546	2.50788	UCAAGUA	AK028013|Ap1s3|252903|adaptor-related protein complex AP-1, sigma 3	BC054111|Ap1s3|252903|adaptor-related protein complex AP-1, sigma 3	BC098237|Ap1s3|252903|adaptor-related protein complex AP-1, sigma 3	NM_183027|Ap1s3|252903|adaptor-related protein complex AP-1, sigma 3
mm9_v1_chr4_-_135129534_135129534	2.50567	UCAAGUA	BC089372|Grhl3|230824|grainyhead-like 3 (Drosophila)	NM_001013756|Grhl3|230824|grainyhead-like 3 (Drosophila)
mm9_v1_chr14_+_49065971_49066097	2.49879	UCAAGUA	AK141246|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	NM_172600|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK032809|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK054494|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK040456|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK153648|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK038175|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene
mm9_v1_chr12_+_3806955_3807159	2.49027	UCAAGUA	NM_007872|Dnmt3a|13435|DNA methyltransferase 3A	AF503867|Dnmt3a|13435|DNA methyltransferase 3A	AK090132|Dnmt3a|13435|DNA methyltransferase 3A	AK147676|Dnmt3a|13435|DNA methyltransferase 3A	BC007466|Dnmt3a|13435|DNA methyltransferase 3A	AF068625|Dnmt3a|13435|DNA methyltransferase 3A	AK147263|Dnmt3a|13435|DNA methyltransferase 3A	AK147627|Dnmt3a|13435|DNA methyltransferase 3A	AK147642|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr16_+_77013880_77014313	2.47316	UCAAGUA	AK011798|Usp25|30940|ubiquitin specific peptidase 25	AK036456|Usp25|30940|ubiquitin specific peptidase 25	AF170563|Usp25|30940|ubiquitin specific peptidase 25	BC048171|Usp25|30940|ubiquitin specific peptidase 25	BC063059|Usp25|30940|ubiquitin specific peptidase 25	NM_013918|Usp25|30940|ubiquitin specific peptidase 25
mm9_v1_chr5_-_111199735_111199738	2.46347	UCAAGUA	NM_029337|Ep400|75560|E1A binding protein p400	NM_173066|Ep400|75560|E1A binding protein p400
mm9_v1_chrX_-_130696466_130696502	2.46294	UCAAGUA	AY534249|Xkrx|331524|X Kell blood group precursor related X linked	NM_183319|Xkrx|331524|X Kell blood group precursor related X linked	BC150896|Xkrx|331524|X Kell blood group precursor related X linked	BC150897|Xkrx|331524|X Kell blood group precursor related X linked
mm9_v1_chr11_+_117515548_117515602	2.45582	UCAAGUA	NM_198022|Tnrc6c|217351|trinucleotide repeat containing 6C
mm9_v1_chr14_-_75347637_75347721	2.43997	UCAAGUA	AK129264|Lrch1|380916|leucine-rich repeats and calponin homology (CH) domain containing 1	AK143909|Lrch1|380916|leucine-rich repeats and calponin homology (CH) domain containing 1	NM_001033439|Lrch1|380916|leucine-rich repeats and calponin homology (CH) domain containing 1
mm9_v1_chr18_+_21159829_21159841	2.41126	UCAAGUA	AB025010|Rnf138|56515|ring finger protein 138	AB025011|Rnf138|56515|ring finger protein 138	NM_019706|Rnf138|56515|ring finger protein 138	NM_207623|Rnf138|56515|ring finger protein 138
mm9_v1_chrX_-_48371127_48371236	2.4065	UCAAGUA	AK087971|Rap2c|72065|RAP2C, member of RAS oncogene family	BC050056|Rap2c|72065|RAP2C, member of RAS oncogene family	BC027363|Rap2c|72065|RAP2C, member of RAS oncogene family	AK146057|Rap2c|72065|RAP2C, member of RAS oncogene family	BC064814|Rap2c|72065|RAP2C, member of RAS oncogene family	BC094890|Rap2c|72065|RAP2C, member of RAS oncogene family	NM_172413|Rap2c|72065|RAP2C, member of RAS oncogene family	AK146956|Rap2c|72065|RAP2C, member of RAS oncogene family	AK147015|Rap2c|72065|RAP2C, member of RAS oncogene family
mm9_v1_chr19_+_45005608_45005655	2.39777	UCAAGUA	NM_001081225|Fam178a|226151|family with sequence similarity 178, member A	AK031688|Fam178a|226151|family with sequence similarity 178, member A	AK147588|Fam178a|226151|family with sequence similarity 178, member A	AK020064|Fam178a|226151|family with sequence similarity 178, member A	AK045983|Fam178a|226151|family with sequence similarity 178, member A
mm9_v1_chr19_-_47538898_47538933	2.38835	UCAAGUA	AJ007012|Sh3pxd2a|14218|SH3 and PX domains 2A	NM_001164717|Sh3pxd2a|14218|SH3 and PX domains 2A	NM_008018|Sh3pxd2a|14218|SH3 and PX domains 2A
mm9_v1_chr1_-_172018982_172019074	2.38209	UCAAGUA	AK196844|Ddr2|18214|discoidin domain receptor family, member 2	NM_022563|Ddr2|18214|discoidin domain receptor family, member 2
mm9_v1_chr19_+_55969810_55969810	2.37532	UCAAGUA	NM_001142924|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box
mm9_v1_chr6_+_4455686_4455760	2.36214	UCAAGUA	AK159212|Col1a2|12843|collagen, type I, alpha 2	AK161017|Col1a2|12843|collagen, type I, alpha 2	NM_007743|Col1a2|12843|collagen, type I, alpha 2	AK160098|Col1a2|12843|collagen, type I, alpha 2	AK160946|Col1a2|12843|collagen, type I, alpha 2	AK159578|Col1a2|12843|collagen, type I, alpha 2	AK031577|Col1a2|12843|collagen, type I, alpha 2	AK132496|Col1a2|12843|collagen, type I, alpha 2	AK157724|Col1a2|12843|collagen, type I, alpha 2	AK159408|Col1a2|12843|collagen, type I, alpha 2	AK160787|Col1a2|12843|collagen, type I, alpha 2	AK160788|Col1a2|12843|collagen, type I, alpha 2	AK160790|Col1a2|12843|collagen, type I, alpha 2	AK161605|Col1a2|12843|collagen, type I, alpha 2	AK164808|Col1a2|12843|collagen, type I, alpha 2	BC007158|Col1a2|12843|collagen, type I, alpha 2	BC042503|Col1a2|12843|collagen, type I, alpha 2	X58251|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr11_+_97223851_97223864	2.36203	UCAAGUA	AF424814|Socs7|192157|suppressor of cytokine signaling 7	NM_138657|Socs7|192157|suppressor of cytokine signaling 7
mm9_v1_chr2_-_173102033_173102038	2.35372	UCAAGUA	AK008976|Pmepa1|65112|prostate transmembrane protein, androgen induced 1	AK136450|Pmepa1|65112|prostate transmembrane protein, androgen induced 1	NM_022995|Pmepa1|65112|prostate transmembrane protein, androgen induced 1
mm9_v1_chr11_-_107331865_107332065	2.34895	UCAAGUA	BC082333|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	BC108351|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AB077281|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK153625|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK171918|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK172137|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	NM_145823|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK171340|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1
mm9_v1_chr14_+_45970767_45970937	2.32991	UCAAGUA	AK154136|Styx|56291|serine/threonine/tyrosine interaction protein	AK030122|Styx|56291|serine/threonine/tyrosine interaction protein	BC096674|Styx|56291|serine/threonine/tyrosine interaction protein	NM_019637|Styx|56291|serine/threonine/tyrosine interaction protein	AK166043|Styx|56291|serine/threonine/tyrosine interaction protein	AK046970|Styx|56291|serine/threonine/tyrosine interaction protein	AK042741|Styx|56291|serine/threonine/tyrosine interaction protein	U34973|Styx|56291|serine/threonine/tyrosine interaction protein	BC038608|Styx|56291|serine/threonine/tyrosine interaction protein	BC085089|Styx|56291|serine/threonine/tyrosine interaction protein	AK002822|Styx|56291|serine/threonine/tyrosine interaction protein
mm9_v1_chrX_-_131343759_131343759	2.31593	UCAAGUA	AK172960|Armcx2|67416|armadillo repeat containing, X-linked 2	NM_001166397|Armcx2|67416|armadillo repeat containing, X-linked 2	NM_001166398|Armcx2|67416|armadillo repeat containing, X-linked 2	NM_026139|Armcx2|67416|armadillo repeat containing, X-linked 2
mm9_v1_chr13_+_109444370_109444370	2.31202	UCAAGUA	AF536978|Pde4d|238871|phosphodiesterase 4D, cAMP specific	NM_011056|Pde4d|238871|phosphodiesterase 4D, cAMP specific
mm9_v1_chr2_+_49307005_49307084	2.30502	UCAAGUA	NM_172663|Epc2|227867|enhancer of polycomb homolog 2 (Drosophila)	AK031025|Epc2|227867|enhancer of polycomb homolog 2 (Drosophila)
mm9_v1_chr19_+_36908682_36908797	2.2953	UCAAGUA	NM_001163635|Tnks2|74493|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
mm9_v1_chr11_-_86171026_86171057	2.29358	UCAAGUA	NM_001080931|Med13|327987|mediator complex subunit 13
mm9_v1_chr15_-_79363346_79363346	2.29223	UCAAGUA	NM_152806|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
mm9_v1_chrX_-_92640149_92640178	2.28864	UCAAGUA	BC053442|Fam123b|72345|family with sequence similarity 123, member B	AK012651|Fam123b|72345|family with sequence similarity 123, member B	AK049774|Fam123b|72345|family with sequence similarity 123, member B	NM_175179|Fam123b|72345|family with sequence similarity 123, member B
mm9_v1_chrX_+_156065141_156065596	2.2879	UCAAGUA	AK049182|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK172022|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK080930|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_001135727|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK038540|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK208632|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr11_-_78510874_78510941	2.27948	UCAAGUA	BC058652|Nlk|18099|nemo like kinase	NM_008702|Nlk|18099|nemo like kinase
mm9_v1_chr1_+_61034757_61034802	2.2734	UCAAGUA	NM_017480|Icos|54167|inducible T-cell co-stimulator	AK030827|Icos|54167|inducible T-cell co-stimulator	AJ250559|Icos|54167|inducible T-cell co-stimulator	BC034852|Icos|54167|inducible T-cell co-stimulator	AB023132|Icos|54167|inducible T-cell co-stimulator	AF257230|Icos|54167|inducible T-cell co-stimulator	AF216748|Icos|54167|inducible T-cell co-stimulator
mm9_v1_chr2_+_53051093_53051128	2.27268	UCAAGUA	NM_022989|Arl6ip6|65103|ADP-ribosylation factor-like 6 interacting protein 6	AK035521|Arl6ip6|65103|ADP-ribosylation factor-like 6 interacting protein 6	BC157980|Arl6ip6|65103|ADP-ribosylation factor-like 6 interacting protein 6
mm9_v1_chr4_-_126413512_126413512	2.27127	UCAAGUA	NM_198960|Tcfap2e|332937|transcription factor AP-2, epsilon
mm9_v1_chr10_+_18189773_18189786	2.26669	UCAAGUA	BC030842|Nhsl1|215819|NHS-like 1	NM_001163592|Nhsl1|215819|NHS-like 1
mm9_v1_chr2_+_92025639_92025639	2.24769	UCAAGUA	AK037174|Phf21a|192285|PHD finger protein 21A	NM_001109691|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr15_+_81416643_81416789	2.2339	UCAAGUA	NM_177821|Ep300|328572|E1A binding protein p300	AK042627|Ep300|328572|E1A binding protein p300	BC144976|Ep300|328572|E1A binding protein p300	BC150681|Ep300|328572|E1A binding protein p300
mm9_v1_chr14_-_73725576_73725603	2.2337	UCAAGUA	AK011246|Rb1|19645|retinoblastoma 1	BC096525|Rb1|19645|retinoblastoma 1	NM_009029|Rb1|19645|retinoblastoma 1
mm9_v1_chr2_+_74506278_74506366	2.22184	UCAAGUA	AB221620|Hoxd13|15433|homeobox D13	NM_008275|Hoxd13|15433|homeobox D13	X99291|Hoxd13|15433|homeobox D13
mm9_v1_chr10_+_126415772_126415772	2.19313	UCAAGUA	BC085142|Ctdsp2|52468|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	NM_001113470|Ctdsp2|52468|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm9_v1_chr17_+_26852581_26852657	2.18949	UCAAGUA	AK030092|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	NM_029870|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK044760|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK020796|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132423|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132454|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene
mm9_v1_chr9_-_66440640_66440842	2.16418	UCAAGUA	AK031141|Usp3|235441|ubiquitin specific peptidase 3	NM_144937|Usp3|235441|ubiquitin specific peptidase 3	AK158516|Usp3|235441|ubiquitin specific peptidase 3	AK161676|Usp3|235441|ubiquitin specific peptidase 3
mm9_v1_chr3_+_58219610_58219610	2.15459	UCAAGUA	NM_001081229|Tsc22d2|72033|TSC22 domain family, member 2
mm9_v1_chr2_-_25838722_25838801	2.15104	UCAAGUA	AK137097|Camsap1|227634|calmodulin regulated spectrin-associated protein 1	NM_001115076|Camsap1|227634|calmodulin regulated spectrin-associated protein 1
mm9_v1_chr14_-_41780085_41780217	2.15091	UCAAGUA	BC026574|Tspan14|52588|tetraspanin 14	NM_145928|Tspan14|52588|tetraspanin 14	AK030593|Tspan14|52588|tetraspanin 14	BC025568|Tspan14|52588|tetraspanin 14	BC024611|Tspan14|52588|tetraspanin 14
mm9_v1_chr9_+_108564418_108564538	2.13445	UCAAGUA	AK161086|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	AK075624|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	NM_020520|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	BC029733|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	AK152436|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	BC052871|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20
mm9_v1_chr19_+_47142217_47142252	2.09968	UCAAGUA	AK031985|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK088953|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_177342|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK169453|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr11_+_45869473_45869501	2.0916	UCAAGUA	NM_009616|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)	BC093480|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm9_v1_chr1_-_74590801_74590859	2.08443	UCAAGUA	BC139091|Usp37|319651|ubiquitin specific peptidase 37	AK133317|Usp37|319651|ubiquitin specific peptidase 37	AK030013|Usp37|319651|ubiquitin specific peptidase 37	NM_176972|Usp37|319651|ubiquitin specific peptidase 37
mm9_v1_chr4_+_137150067_137150162	2.05839	UCAAGUA	AK166158|Usp48|170707|ubiquitin specific peptidase 48	NM_130879|Usp48|170707|ubiquitin specific peptidase 48	AK220190|Usp48|170707|ubiquitin specific peptidase 48	BC021769|Usp48|170707|ubiquitin specific peptidase 48	AK052297|Usp48|170707|ubiquitin specific peptidase 48
mm9_v1_chr18_-_6516073_6516084	2.04709	UCAAGUA	AK148194|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	AF079765|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	NM_007935|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)
mm9_v1_chr5_+_117769274_117769326	2.02333	UCAAGUA	NM_001033311|Vsig10|231668|V-set and immunoglobulin domain containing 10	AK138152|Vsig10|231668|V-set and immunoglobulin domain containing 10
mm9_v1_chr9_-_101154160_101154163	2.01079	UCAAGUA	NM_001161362|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha
mm9_v1_chr3_-_95622554_95622875	2.00335	UCAAGUA	AK129150|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK154692|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	BC067054|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK083674|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK087157|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK012860|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK015972|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	NM_001081293|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2
mm9_v1_chr5_+_110564841_110564902	1.98972	UCAAGUA	NM_172717|Chfr|231600|checkpoint with forkhead and ring finger domains	AK039281|Chfr|231600|checkpoint with forkhead and ring finger domains	AK133154|Chfr|231600|checkpoint with forkhead and ring finger domains	AK154038|Chfr|231600|checkpoint with forkhead and ring finger domains	AK048930|Chfr|231600|checkpoint with forkhead and ring finger domains	AK147892|Chfr|231600|checkpoint with forkhead and ring finger domains	AK077629|Chfr|231600|checkpoint with forkhead and ring finger domains	AK148436|Chfr|231600|checkpoint with forkhead and ring finger domains	AK155295|Chfr|231600|checkpoint with forkhead and ring finger domains	AK155525|Chfr|231600|checkpoint with forkhead and ring finger domains	AK052473|Chfr|231600|checkpoint with forkhead and ring finger domains	AK169193|Chfr|231600|checkpoint with forkhead and ring finger domains	BC049792|Chfr|231600|checkpoint with forkhead and ring finger domains	AK169182|Chfr|231600|checkpoint with forkhead and ring finger domains
mm9_v1_chr3_-_122939013_122939066	1.98448	UCAAGUA	BC158045|Synpo2|118449|synaptopodin 2	NM_080451|Synpo2|118449|synaptopodin 2
mm9_v1_chr18_+_73732352_73732560	1.98205	UCAAGUA	NM_001039214|Mex3c|240396|mex3 homolog C (C. elegans)	AK133686|Mex3c|240396|mex3 homolog C (C. elegans)
mm9_v1_chr13_+_44826121_44826271	1.98068	UCAAGUA	D31967|Jarid2|16468|jumonji, AT rich interactive domain 2	BC052444|Jarid2|16468|jumonji, AT rich interactive domain 2	BC060695|Jarid2|16468|jumonji, AT rich interactive domain 2	NM_021878|Jarid2|16468|jumonji, AT rich interactive domain 2
mm9_v1_chr11_+_57822347_57822565	1.97757	UCAAGUA	NM_028451|Larp1|73158|La ribonucleoprotein domain family, member 1
mm9_v1_chr10_-_59414516_59414582	1.97597	UCAAGUA	BC131992|Ddit4|74747|DNA-damage-inducible transcript 4	BC132645|Ddit4|74747|DNA-damage-inducible transcript 4	BC145370|Ddit4|74747|DNA-damage-inducible transcript 4	AK017926|Ddit4|74747|DNA-damage-inducible transcript 4	NM_029083|Ddit4|74747|DNA-damage-inducible transcript 4	AK081046|Ddit4|74747|DNA-damage-inducible transcript 4
mm9_v1_chr4_-_125879832_125879953	1.96498	UCAAGUA	AK034044|Thrap3|230753|thyroid hormone receptor associated protein 3	AK079601|Thrap3|230753|thyroid hormone receptor associated protein 3	BC026580|Thrap3|230753|thyroid hormone receptor associated protein 3	BC092239|Thrap3|230753|thyroid hormone receptor associated protein 3	AK169008|Thrap3|230753|thyroid hormone receptor associated protein 3	BC048391|Thrap3|230753|thyroid hormone receptor associated protein 3	NM_146153|Thrap3|230753|thyroid hormone receptor associated protein 3
mm9_v1_chr16_+_32332294_32332380	1.96446	UCAAGUA	NM_177633|Ubxn7|224111|UBX domain protein 7	AK147730|Ubxn7|224111|UBX domain protein 7	BC062904|Ubxn7|224111|UBX domain protein 7
mm9_v1_chr7_-_80686630_80686631	1.95733	UCAAGUA	AK133596|Chd2|244059|chromodomain helicase DNA binding protein 2	AK040559|Chd2|244059|chromodomain helicase DNA binding protein 2	AK132638|Chd2|244059|chromodomain helicase DNA binding protein 2	AK136686|Chd2|244059|chromodomain helicase DNA binding protein 2	NM_001081345|Chd2|244059|chromodomain helicase DNA binding protein 2
mm9_v1_chr1_-_72258684_72258880	1.9552	UCAAGUA	AY628210|Mreg|381269|melanoregulin	BC068125|Mreg|381269|melanoregulin	NM_001005423|Mreg|381269|melanoregulin
mm9_v1_chr4_+_147314951_147315041	1.9529	UCAAGUA	AK011059|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	AK153761|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	NM_029841|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	BC012878|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	AK173332|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene
mm9_v1_chr11_-_79894401_79894534	1.94385	UCAAGUA	AF120152|Crlf3|54394|cytokine receptor-like factor 3	AK078569|Crlf3|54394|cytokine receptor-like factor 3	AK037880|Crlf3|54394|cytokine receptor-like factor 3	AK146798|Crlf3|54394|cytokine receptor-like factor 3	BC004780|Crlf3|54394|cytokine receptor-like factor 3	AK137528|Crlf3|54394|cytokine receptor-like factor 3	AF046060|Crlf3|54394|cytokine receptor-like factor 3	NM_018776|Crlf3|54394|cytokine receptor-like factor 3
mm9_v1_chr19_+_32832002_32832163	1.92174	UCAAGUA	NM_008960|Pten|19211|phosphatase and tensin homolog	AK164302|Pten|19211|phosphatase and tensin homolog	AK088717|Pten|19211|phosphatase and tensin homolog	AK076980|Pten|19211|phosphatase and tensin homolog
mm9_v1_chr1_+_78813482_78813523	1.91587	UCAAGUA	AK133469|Kcne4|57814|potassium voltage-gated channel, Isk-related subfamily, gene 4	BC032920|Kcne4|57814|potassium voltage-gated channel, Isk-related subfamily, gene 4	BC034849|Kcne4|57814|potassium voltage-gated channel, Isk-related subfamily, gene 4	AF076533|Kcne4|57814|potassium voltage-gated channel, Isk-related subfamily, gene 4	NM_021342|Kcne4|57814|potassium voltage-gated channel, Isk-related subfamily, gene 4
mm9_v1_chr5_-_66489416_66489417	1.91284	UCAAGUA	NM_139065|Rbm47|245945|RNA binding motif protein 47	BC013481|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr9_+_77961044_77961183	1.8874	UCAAGUA	NM_019987|Ick|56542|intestinal cell kinase	AK045950|Ick|56542|intestinal cell kinase	AK164613|Ick|56542|intestinal cell kinase	AK008991|Ick|56542|intestinal cell kinase	AK133537|Ick|56542|intestinal cell kinase	AK087484|Ick|56542|intestinal cell kinase
mm9_v1_chr16_+_52031661_52031695	1.88217	UCAAGUA	NM_001033238|Cblb|208650|Casitas B-lineage lymphoma b	AK147367|Cblb|208650|Casitas B-lineage lymphoma b
mm9_v1_chr14_-_58508974_58509153	1.88204	UCAAGUA	AK020965|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AY668951|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK170139|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK031184|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK139216|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK140182|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK049270|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK163174|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK017158|Zdhhc20|75965|zinc finger, DHHC domain containing 20	NM_029492|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK151840|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK170017|Zdhhc20|75965|zinc finger, DHHC domain containing 20	BC019536|Zdhhc20|75965|zinc finger, DHHC domain containing 20
mm9_v1_chr1_+_24184448_24184693	1.87209	UCAAGUA	NM_007740|Col9a1|12839|collagen, type IX, alpha 1	AK031071|Col9a1|12839|collagen, type IX, alpha 1	D17511|Col9a1|12839|collagen, type IX, alpha 1	BC046970|Col9a1|12839|collagen, type IX, alpha 1	L12215|Col9a1|12839|collagen, type IX, alpha 1
mm9_v1_chr10_+_127814144_127814228	1.86356	UCAAGUA	AK144017|Ankrd52|237615|ankyrin repeat domain 52	AK032429|Ankrd52|237615|ankyrin repeat domain 52	NM_172790|Ankrd52|237615|ankyrin repeat domain 52	AK090124|Ankrd52|237615|ankyrin repeat domain 52	AK035533|Ankrd52|237615|ankyrin repeat domain 52	BC117907|Ankrd52|237615|ankyrin repeat domain 52	BC117908|Ankrd52|237615|ankyrin repeat domain 52
mm9_v1_chr10_+_62383370_62383381	1.86353	UCAAGUA	AK030865|Slc25a16|73132|solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	NM_175194|Slc25a16|73132|solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16
mm9_v1_chr13_-_32430412_32430498	1.86249	UCAAGUA	BC031788|Gmds|218138|GDP-mannose 4, 6-dehydratase	NM_146041|Gmds|218138|GDP-mannose 4, 6-dehydratase	BC093502|Gmds|218138|GDP-mannose 4, 6-dehydratase	AK086076|Gmds|218138|GDP-mannose 4, 6-dehydratase
mm9_v1_chr5_-_66542161_66542216	1.86084	UCAAGUA	AK035620|Rbm47|245945|RNA binding motif protein 47	AK142584|Rbm47|245945|RNA binding motif protein 47	AK085733|Rbm47|245945|RNA binding motif protein 47	NM_178446|Rbm47|245945|RNA binding motif protein 47	BC112902|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr4_-_4720451_4720507	1.86039	UCAAGUA	BC048776|Impad1|242291|inositol monophosphatase domain containing 1	NM_177730|Impad1|242291|inositol monophosphatase domain containing 1	AK045511|Impad1|242291|inositol monophosphatase domain containing 1
mm9_v1_chr18_+_49992650_49992666	1.84573	UCAAGUA	AY590892|Dmxl1|240283|Dmx-like 1	NM_001081371|Dmxl1|240283|Dmx-like 1
mm9_v1_chr3_+_103083215_103083215	1.84295	UCAAGUA	AY458590|Trim33|94093|tripartite motif-containing 33	NM_001079830|Trim33|94093|tripartite motif-containing 33	NM_053170|Trim33|94093|tripartite motif-containing 33
mm9_v1_chr15_-_9070066_9070213	1.84049	UCAAGUA	AF083215|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK204645|Skp2|27401|S-phase kinase-associated protein 2 (p45)	BC003468|Skp2|27401|S-phase kinase-associated protein 2 (p45)	BC092236|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK167677|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK037002|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK044212|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK166034|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK032979|Skp2|27401|S-phase kinase-associated protein 2 (p45)	BC098371|Skp2|27401|S-phase kinase-associated protein 2 (p45)	NM_013787|Skp2|27401|S-phase kinase-associated protein 2 (p45)	NM_145468|Skp2|27401|S-phase kinase-associated protein 2 (p45)
mm9_v1_chr2_+_75670230_75670233	1.83613	UCAAGUA	AK031049|Agps|228061|alkylglycerone phosphate synthase	NM_172666|Agps|228061|alkylglycerone phosphate synthase
mm9_v1_chr13_-_17896909_17896930	1.83474	UCAAGUA	AK173265|Cdk13|69562|cyclin-dependent kinase 13	NM_001081058|Cdk13|69562|cyclin-dependent kinase 13	NM_027118|Cdk13|69562|cyclin-dependent kinase 13
mm9_v1_chr11_-_102046532_102046628	1.82995	UCAAGUA	AK081685|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK011126|Lsm12|268490|LSM12 homolog (S. cerevisiae)	BC027784|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK132889|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK075668|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK151118|Lsm12|268490|LSM12 homolog (S. cerevisiae)	NM_172947|Lsm12|268490|LSM12 homolog (S. cerevisiae)
mm9_v1_chr1_-_37592976_37593103	1.8093	UCAAGUA	AB053217|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	AK163327|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	AK082702|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	NM_173870|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm9_v1_chr1_+_107886982_107886982	1.8032	UCAAGUA	AK046562|Zcchc2|227449|zinc finger, CCHC domain containing 2	NM_001122675|Zcchc2|227449|zinc finger, CCHC domain containing 2	NM_001122676|Zcchc2|227449|zinc finger, CCHC domain containing 2
mm9_v1_chr4_-_11313886_11313929	1.79658	UCAAGUA	AK140848|Esrp1|207920|epithelial splicing regulatory protein 1	NM_194055|Esrp1|207920|epithelial splicing regulatory protein 1
mm9_v1_chr9_+_65756816_65756864	1.79655	UCAAGUA	AK090262|Csnk1g1|214897|casein kinase 1, gamma 1	NM_173185|Csnk1g1|214897|casein kinase 1, gamma 1	AK050473|Csnk1g1|214897|casein kinase 1, gamma 1	AK149310|Csnk1g1|214897|casein kinase 1, gamma 1
mm9_v1_chr2_+_10294062_10294208	1.79532	UCAAGUA	AK040600|Sfmbt2|353282|Scm-like with four mbt domains 2	NM_001198809|Sfmbt2|353282|Scm-like with four mbt domains 2	NM_177386|Sfmbt2|353282|Scm-like with four mbt domains 2	AK052339|Sfmbt2|353282|Scm-like with four mbt domains 2	BC115510|Sfmbt2|353282|Scm-like with four mbt domains 2	BC115511|Sfmbt2|353282|Scm-like with four mbt domains 2	AK147651|Sfmbt2|353282|Scm-like with four mbt domains 2
mm9_v1_chr3_+_113733457_113733508	1.79238	UCAAGUA	AK140136|Col11a1|12814|collagen, type XI, alpha 1	NM_007729|Col11a1|12814|collagen, type XI, alpha 1	BC052161|Col11a1|12814|collagen, type XI, alpha 1
mm9_v1_chr12_+_3891743_3891823	1.78043	UCAAGUA	AF480164|Dnmt3a|13435|DNA methyltransferase 3A	NM_153743|Dnmt3a|13435|DNA methyltransferase 3A	AK157792|Dnmt3a|13435|DNA methyltransferase 3A	AK077792|Dnmt3a|13435|DNA methyltransferase 3A	AK136170|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr1_-_13579885_13579986	1.76329	UCAAGUA	AK168708|Tram1|72265|translocating chain-associating membrane protein 1	AK151240|Tram1|72265|translocating chain-associating membrane protein 1	AK152343|Tram1|72265|translocating chain-associating membrane protein 1	AK152991|Tram1|72265|translocating chain-associating membrane protein 1	AK150777|Tram1|72265|translocating chain-associating membrane protein 1	BC012401|Tram1|72265|translocating chain-associating membrane protein 1	AK145291|Tram1|72265|translocating chain-associating membrane protein 1	AK146207|Tram1|72265|translocating chain-associating membrane protein 1	AK088814|Tram1|72265|translocating chain-associating membrane protein 1	AK142658|Tram1|72265|translocating chain-associating membrane protein 1	AK155905|Tram1|72265|translocating chain-associating membrane protein 1	AK159203|Tram1|72265|translocating chain-associating membrane protein 1	AK159350|Tram1|72265|translocating chain-associating membrane protein 1	NM_028173|Tram1|72265|translocating chain-associating membrane protein 1	AK150551|Tram1|72265|translocating chain-associating membrane protein 1	AK151409|Tram1|72265|translocating chain-associating membrane protein 1	AK151664|Tram1|72265|translocating chain-associating membrane protein 1	AK152338|Tram1|72265|translocating chain-associating membrane protein 1	AK153379|Tram1|72265|translocating chain-associating membrane protein 1	AK028304|Tram1|72265|translocating chain-associating membrane protein 1	AK159878|Tram1|72265|translocating chain-associating membrane protein 1
mm9_v1_chr9_+_92437056_92437289	1.75704	UCAAGUA	AK046364|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	NM_001142916|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	NM_011961|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	AK033363|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	AK157207|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	AK042433|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	BC021352|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	AF080572|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2
mm9_v1_chr2_-_39046224_39046253	1.75667	UCAAGUA	BC132485|Scai|320271|suppressor of cancer cell invasion	BC144986|Scai|320271|suppressor of cancer cell invasion	BC144987|Scai|320271|suppressor of cancer cell invasion	BC144989|Scai|320271|suppressor of cancer cell invasion	AK044772|Scai|320271|suppressor of cancer cell invasion	AK082408|Scai|320271|suppressor of cancer cell invasion	AK083280|Scai|320271|suppressor of cancer cell invasion	NM_178778|Scai|320271|suppressor of cancer cell invasion	AK163712|Scai|320271|suppressor of cancer cell invasion
mm9_v1_chr5_+_77694506_77694565	1.752	UCAAGUA	AK004945|Rest|19712|RE1-silencing transcription factor	NM_011263|Rest|19712|RE1-silencing transcription factor	AK156514|Rest|19712|RE1-silencing transcription factor
mm9_v1_chrX_+_50265390_50265552	1.74565	UCAAGUA	AK157045|Phf6|70998|PHD finger protein 6	AK012211|Phf6|70998|PHD finger protein 6	AK077803|Phf6|70998|PHD finger protein 6	AK163345|Phf6|70998|PHD finger protein 6	BC043127|Phf6|70998|PHD finger protein 6	NM_027642|Phf6|70998|PHD finger protein 6	AK141804|Phf6|70998|PHD finger protein 6	BC055330|Phf6|70998|PHD finger protein 6	AK122560|Phf6|70998|PHD finger protein 6	AK028498|Phf6|70998|PHD finger protein 6	AK038320|Phf6|70998|PHD finger protein 6	BC057374|Phf6|70998|PHD finger protein 6	AK192342|Phf6|70998|PHD finger protein 6	AK213676|Phf6|70998|PHD finger protein 6
mm9_v1_chr15_-_79377170_79377216	1.72557	UCAAGUA	BC096036|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	NM_001040187|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	NM_199080|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
mm9_v1_chr1_+_64579358_64579513	1.72362	UCAAGUA	NM_001037726|Creb1|12912|cAMP responsive element binding protein 1	NM_009952|Creb1|12912|cAMP responsive element binding protein 1	NM_133828|Creb1|12912|cAMP responsive element binding protein 1	AK079223|Creb1|12912|cAMP responsive element binding protein 1	X92497|Creb1|12912|cAMP responsive element binding protein 1	AK042595|Creb1|12912|cAMP responsive element binding protein 1	BC021649|Creb1|12912|cAMP responsive element binding protein 1	M95106|Creb1|12912|cAMP responsive element binding protein 1	AF448507|Creb1|12912|cAMP responsive element binding protein 1
mm9_v1_chr1_-_69732373_69732533	1.70773	UCAAGUA	BC138606|Ikzf2|22779|IKAROS family zinc finger 2	BC138608|Ikzf2|22779|IKAROS family zinc finger 2	AK047925|Ikzf2|22779|IKAROS family zinc finger 2	AF044257|Ikzf2|22779|IKAROS family zinc finger 2	NM_011770|Ikzf2|22779|IKAROS family zinc finger 2
mm9_v1_chr15_+_84753817_84753857	1.68264	UCAAGUA	AK141750|Nup50|18141|nucleoporin 50	AK165581|Nup50|18141|nucleoporin 50	AK133562|Nup50|18141|nucleoporin 50	BC060234|Nup50|18141|nucleoporin 50	AK161713|Nup50|18141|nucleoporin 50	BC065102|Nup50|18141|nucleoporin 50	AK087706|Nup50|18141|nucleoporin 50	AK168888|Nup50|18141|nucleoporin 50	AK151947|Nup50|18141|nucleoporin 50	AK152309|Nup50|18141|nucleoporin 50	BC059239|Nup50|18141|nucleoporin 50	NM_016714|Nup50|18141|nucleoporin 50
mm9_v1_chr6_-_142912908_142912971	1.67961	UCAAGUA	AK046188|St8sia1|20449|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	BC024821|St8sia1|20449|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	NM_011374|St8sia1|20449|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
mm9_v1_chr14_-_37781943_37781973	1.66397	UCAAGUA	AK147383|Gcap14|72972|granule cell antiserum positive 14	NM_027045|Gcap14|72972|granule cell antiserum positive 14
mm9_v1_chr8_-_81923366_81923445	1.66058	UCAAGUA	BC058693|Smad1|17125|MAD homolog 1 (Drosophila)	NM_008539|Smad1|17125|MAD homolog 1 (Drosophila)	AK084505|Smad1|17125|MAD homolog 1 (Drosophila)	AK158509|Smad1|17125|MAD homolog 1 (Drosophila)
mm9_v1_chr11_+_94072732_94072796	1.65639	UCAAGUA	AK142667|Tob1|22057|transducer of ErbB-2.1	BC082588|Tob1|22057|transducer of ErbB-2.1	NM_009427|Tob1|22057|transducer of ErbB-2.1
mm9_v1_chrX_-_141921588_141921636	1.62757	UCAAGUA	AF461135|Amot|27494|angiomotin	NM_153319|Amot|27494|angiomotin	BC057638|Amot|27494|angiomotin
mm9_v1_chr9_+_102737229_102737361	1.62228	UCAAGUA	L21707|Ryk|20187|receptor-like tyrosine kinase	NM_001042607|Ryk|20187|receptor-like tyrosine kinase	NM_013649|Ryk|20187|receptor-like tyrosine kinase	L02210|Ryk|20187|receptor-like tyrosine kinase	M98547|Ryk|20187|receptor-like tyrosine kinase	AK144355|Ryk|20187|receptor-like tyrosine kinase	L38394|Ryk|20187|receptor-like tyrosine kinase
mm9_v1_chr13_-_70776511_70776699	1.61985	UCAAGUA	AK143610|BC018507|218333|cDNA sequence BC018507	NM_144837|BC018507|218333|cDNA sequence BC018507
mm9_v1_chrX_+_147481712_147481775	1.61552	UCAAGUA	AK148151|Fgd1|14163|FYVE, RhoGEF and PH domain containing 1	BC011462|Fgd1|14163|FYVE, RhoGEF and PH domain containing 1	NM_008001|Fgd1|14163|FYVE, RhoGEF and PH domain containing 1
mm9_v1_chr2_-_136942066_136942255	1.59516	UCAAGUA	NM_013822|Jag1|16449|jagged 1	AK137092|Jag1|16449|jagged 1	AF171092|Jag1|16449|jagged 1
mm9_v1_chr15_-_56526052_56526100	1.59034	UCAAGUA	U52524|Has2|15117|hyaluronan synthase 2	BC080281|Has2|15117|hyaluronan synthase 2	U69695|Has2|15117|hyaluronan synthase 2	AK045020|Has2|15117|hyaluronan synthase 2	AK079729|Has2|15117|hyaluronan synthase 2	NM_008216|Has2|15117|hyaluronan synthase 2
mm9_v1_chr9_-_96789818_96789892	1.586	UCAAGUA	AK164254|Acpl2|235534|acid phosphatase-like 2	AK083712|Acpl2|235534|acid phosphatase-like 2	BC023960|Acpl2|235534|acid phosphatase-like 2	BC036342|Acpl2|235534|acid phosphatase-like 2	NM_153420|Acpl2|235534|acid phosphatase-like 2	AK043758|Acpl2|235534|acid phosphatase-like 2	AK082059|Acpl2|235534|acid phosphatase-like 2	AK084605|Acpl2|235534|acid phosphatase-like 2	AK144699|Acpl2|235534|acid phosphatase-like 2	AK036973|Acpl2|235534|acid phosphatase-like 2
mm9_v1_chr2_+_74543545_74543545	1.57773	UCAAGUA	NM_008276|Hoxd8|15437|homeobox D8
mm9_v1_chr1_-_51535232_51535262	1.56988	UCAAGUA	AK167541|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK167652|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK028886|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK031015|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK042351|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK049396|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK051607|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK077226|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK077767|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK079434|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK083915|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK163613|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK166300|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AY880264|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	NM_028696|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK076824|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A
mm9_v1_chr19_+_41904459_41904605	1.5672	UCAAGUA	NM_008043|Frat1|14296|frequently rearranged in advanced T-cell lymphomas	AK015680|Frat1|14296|frequently rearranged in advanced T-cell lymphomas	BC140987|Frat1|14296|frequently rearranged in advanced T-cell lymphomas	U58974|Frat1|14296|frequently rearranged in advanced T-cell lymphomas
mm9_v1_chr4_-_123427465_123427587	1.56021	UCAAGUA	AK006378|Akirin1|68050|akirin 1	AK078055|Akirin1|68050|akirin 1	AB041594|Akirin1|68050|akirin 1	AK160087|Akirin1|68050|akirin 1	AK168201|Akirin1|68050|akirin 1	AK168214|Akirin1|68050|akirin 1	AK146017|Akirin1|68050|akirin 1	AK168530|Akirin1|68050|akirin 1	AK159632|Akirin1|68050|akirin 1	NM_023423|Akirin1|68050|akirin 1	BC003291|Akirin1|68050|akirin 1
mm9_v1_chr9_-_71959599_71959699	1.55764	UCAAGUA	M97635|Tcf12|21406|transcription factor 12	BC037097|Tcf12|21406|transcription factor 12	AK143246|Tcf12|21406|transcription factor 12	NM_011544|Tcf12|21406|transcription factor 12	AK169800|Tcf12|21406|transcription factor 12
mm9_v1_chr3_-_104667319_104667422	1.55109	UCAAGUA	AK161370|Capza1|12340|capping protein (actin filament) muscle Z-line, alpha 1	NM_009797|Capza1|12340|capping protein (actin filament) muscle Z-line, alpha 1
mm9_v1_chr6_+_95067873_95067899	1.54139	UCAAGUA	AK142080|Kbtbd8|243574|kelch repeat and BTB (POZ) domain containing 8	NM_001008785|Kbtbd8|243574|kelch repeat and BTB (POZ) domain containing 8	NM_001102670|Kbtbd8|243574|kelch repeat and BTB (POZ) domain containing 8
mm9_v1_chr9_+_64658817_64658817	1.53605	UCAAGUA	NM_001162917|Dennd4a|102442|DENN/MADD domain containing 4A
mm9_v1_chr4_-_131817388_131817463	1.51851	UCAAGUA	BC046983|Gmeb1|56809|glucocorticoid modulatory element binding protein 1	AK134349|Gmeb1|56809|glucocorticoid modulatory element binding protein 1	NM_001122992|Gmeb1|56809|glucocorticoid modulatory element binding protein 1	NM_020273|Gmeb1|56809|glucocorticoid modulatory element binding protein 1
mm9_v1_chrX_-_91368713_91368747	1.51404	UCAAGUA	L19714|Zfx|22764|zinc finger protein X-linked	AK145115|Zfx|22764|zinc finger protein X-linked	NM_001044386|Zfx|22764|zinc finger protein X-linked	NM_011768|Zfx|22764|zinc finger protein X-linked
mm9_v1_chr15_+_34012415_34012599	1.50951	UCAAGUA	AK087486|Mtdh|67154|metadherin	AK156119|Mtdh|67154|metadherin	AK029915|Mtdh|67154|metadherin	NM_026002|Mtdh|67154|metadherin	AK011808|Mtdh|67154|metadherin	AK151810|Mtdh|67154|metadherin	AK171976|Mtdh|67154|metadherin	AK151269|Mtdh|67154|metadherin	AF501309|Mtdh|67154|metadherin	AK009253|Mtdh|67154|metadherin	BC023115|Mtdh|67154|metadherin
mm9_v1_chr18_+_83080270_83080270	1.50525	UCAAGUA	NM_183033|Zfp516|329003|zinc finger protein 516
mm9_v1_chr10_-_114821398_114821490	1.50154	UCAAGUA	BC027502|Thap2|66816|THAP domain containing, apoptosis associated protein 2	AK051198|Thap2|66816|THAP domain containing, apoptosis associated protein 2	AK009162|Thap2|66816|THAP domain containing, apoptosis associated protein 2	AK018577|Thap2|66816|THAP domain containing, apoptosis associated protein 2	AK081303|Thap2|66816|THAP domain containing, apoptosis associated protein 2	NM_025780|Thap2|66816|THAP domain containing, apoptosis associated protein 2
mm9_v1_chr14_+_70945429_70945513	1.50077	UCAAGUA	BC033929|Reep4|72549|receptor accessory protein 4	NM_180588|Reep4|72549|receptor accessory protein 4	AK187453|Reep4|72549|receptor accessory protein 4	AY562232|Reep4|72549|receptor accessory protein 4
mm9_v1_chr4_+_11118500_11118500	1.49663	UCAAGUA	NM_001037134|Ccne2|12448|cyclin E2
mm9_v1_chr3_+_87329497_87329593	1.49508	UCAAGUA	NM_001083318|Etv3|27049|ets variant gene 3	NM_012051|Etv3|27049|ets variant gene 3	AF218539|Etv3|27049|ets variant gene 3	AK147552|Etv3|27049|ets variant gene 3	AK163509|Etv3|27049|ets variant gene 3	AK155080|Etv3|27049|ets variant gene 3	AK089640|Etv3|27049|ets variant gene 3	AK156824|Etv3|27049|ets variant gene 3	AK155957|Etv3|27049|ets variant gene 3	BC078636|Etv3|27049|ets variant gene 3	BC057151|Etv3|27049|ets variant gene 3
mm9_v1_chr3_+_51219882_51219968	1.49434	UCAAGUA	NM_053089|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm9_v1_chr18_-_61371233_61371266	1.48536	UCAAGUA	AK052942|Slc26a2|13521|solute carrier family 26 (sulfate transporter), member 2	NM_007885|Slc26a2|13521|solute carrier family 26 (sulfate transporter), member 2
mm9_v1_chr18_+_63081977_63081983	1.4738	UCAAGUA	AK172004|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK156319|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	NM_133237|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	BC141269|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	BC141270|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1
mm9_v1_chr11_-_106860803_106860838	1.46641	UCAAGUA	NM_010655|Kpna2|16647|karyopherin (importin) alpha 2
mm9_v1_chr7_+_117771170_117771184	1.46117	UCAAGUA	AK144181|Adm|11535|adrenomedullin	AK144649|Adm|11535|adrenomedullin	AK144600|Adm|11535|adrenomedullin	AK171066|Adm|11535|adrenomedullin	NM_009627|Adm|11535|adrenomedullin	U77630|Adm|11535|adrenomedullin	BC052665|Adm|11535|adrenomedullin
mm9_v1_chr13_-_112599181_112599204	1.45343	UCAAGUA	AB014614|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	AF117340|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	NM_011945|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1
mm9_v1_chr12_+_85658045_85658119	1.4486	UCAAGUA	AF295806|Zfp410|52708|zinc finger protein 410	AK033090|Zfp410|52708|zinc finger protein 410	AK083003|Zfp410|52708|zinc finger protein 410	AK049384|Zfp410|52708|zinc finger protein 410	AK132345|Zfp410|52708|zinc finger protein 410	BC021528|Zfp410|52708|zinc finger protein 410	AK139797|Zfp410|52708|zinc finger protein 410	BC052080|Zfp410|52708|zinc finger protein 410	BC056957|Zfp410|52708|zinc finger protein 410	NM_144833|Zfp410|52708|zinc finger protein 410	AK053001|Zfp410|52708|zinc finger protein 410	AK042224|Zfp410|52708|zinc finger protein 410	AK051939|Zfp410|52708|zinc finger protein 410
mm9_v1_chr14_+_70009282_70009284	1.44388	UCAAGUA	NM_033325|Loxl2|94352|lysyl oxidase-like 2	AK045019|Loxl2|94352|lysyl oxidase-like 2
mm9_v1_chr10_-_55948481_55948530	1.43469	UCAAGUA	NM_001033385|D630037F22Rik|544696|RIKEN cDNA D630037F22 gene
mm9_v1_chr2_-_68309996_68310080	1.42597	UCAAGUA	AK017292|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AF099988|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	BC064443|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	NM_016866|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AK148456|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)
mm9_v1_chr12_+_82960953_82961016	1.41957	UCAAGUA	NM_018814|Pcnx|54604|pecanex homolog (Drosophila)
mm9_v1_chrX_+_135751704_135751704	1.40691	UCAAGUA	NM_001164631|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1	NM_001164632|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1	NM_001164633|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1
mm9_v1_chrX_+_135744582_135744582	1.40582	UCAAGUA	NM_001164630|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1	NM_175541|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1
mm9_v1_chr2_+_22924561_22924686	1.4047	UCAAGUA	NM_001102437|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	NM_001102438|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	AK147839|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	BC053518|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	BC035202|Acbd5|74159|acyl-Coenzyme A binding domain containing 5
mm9_v1_chr17_+_87362450_87362450	1.39466	UCAAGUA	BC056363|Rhoq|104215|ras homolog gene family, member Q	NM_145491|Rhoq|104215|ras homolog gene family, member Q
mm9_v1_chr11_-_45758413_45758456	1.39175	UCAAGUA	AF514309|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	BC094286|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	AK143661|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	AK082292|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	NM_028185|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11
mm9_v1_chr8_+_58773321_58773362	1.38832	UCAAGUA	NM_008278|Hpgd|15446|hydroxyprostaglandin dehydrogenase 15 (NAD)
mm9_v1_chr10_+_24315247_24315401	1.3829	UCAAGUA	NM_010217|Ctgf|14219|connective tissue growth factor	BC006783|Ctgf|14219|connective tissue growth factor	M80263|Ctgf|14219|connective tissue growth factor	M70642|Ctgf|14219|connective tissue growth factor
mm9_v1_chr6_+_147039596_147039596	1.38193	UCAAGUA	NM_001081237|Klhdc5|232539|kelch domain containing 5
mm9_v1_chr4_-_133843139_133843188	1.36679	UCAAGUA	AK053750|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK157013|Pdik1l|230809|PDLIM1 interacting kinase 1 like	BC027088|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141566|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK139413|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141823|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK162350|Pdik1l|230809|PDLIM1 interacting kinase 1 like	NM_001163794|Pdik1l|230809|PDLIM1 interacting kinase 1 like
mm9_v1_chr9_+_102408467_102408467	1.34704	UCAAGUA	AJ293727|Ky|16716|kyphoscoliosis peptidase	NM_024291|Ky|16716|kyphoscoliosis peptidase
mm9_v1_chr2_-_101679136_101679136	1.33642	UCAAGUA	NM_001110849|Prr5l|72446|proline rich 5 like
mm9_v1_chr5_+_143996849_143996932	1.33551	UCAAGUA	AK049650|Zfp12|231866|zinc finger protein 12	NM_177681|Zfp12|231866|zinc finger protein 12	BC059836|Zfp12|231866|zinc finger protein 12	BC053080|Zfp12|231866|zinc finger protein 12
mm9_v1_chr9_-_62828677_62828715	1.33398	UCAAGUA	AF077950|Pias1|56469|protein inhibitor of activated STAT 1	BC051417|Pias1|56469|protein inhibitor of activated STAT 1	AK075708|Pias1|56469|protein inhibitor of activated STAT 1	NM_019663|Pias1|56469|protein inhibitor of activated STAT 1	AK153871|Pias1|56469|protein inhibitor of activated STAT 1
mm9_v1_chr4_-_57314708_57314708	1.33011	UCAAGUA	AK052928|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3	NM_011207|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3
mm9_v1_chr9_+_66561492_66561635	1.32778	UCAAGUA	NM_178396|Car12|76459|carbonic anyhydrase 12	AK052639|Car12|76459|carbonic anyhydrase 12	AK157977|Car12|76459|carbonic anyhydrase 12	AK037694|Car12|76459|carbonic anyhydrase 12	AK166132|Car12|76459|carbonic anyhydrase 12	BC031385|Car12|76459|carbonic anyhydrase 12	BC035941|Car12|76459|carbonic anyhydrase 12	AK170859|Car12|76459|carbonic anyhydrase 12	BC033432|Car12|76459|carbonic anyhydrase 12
mm9_v1_chr9_+_21351307_21351499	1.31112	UCAAGUA	NM_021531|Carm1|59035|coactivator-associated arginine methyltransferase 1	NM_153141|Carm1|59035|coactivator-associated arginine methyltransferase 1	BC036974|Carm1|59035|coactivator-associated arginine methyltransferase 1	AK158242|Carm1|59035|coactivator-associated arginine methyltransferase 1	BC071267|Carm1|59035|coactivator-associated arginine methyltransferase 1	AF117887|Carm1|59035|coactivator-associated arginine methyltransferase 1	AK158757|Carm1|59035|coactivator-associated arginine methyltransferase 1
mm9_v1_chr3_+_89324085_89324085	1.30664	UCAAGUA	AK137738|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	AK170218|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	NM_080466|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm9_v1_chr5_-_115608153_115608220	1.29916	UCAAGUA	AK031525|Mlec|109154|malectin	AK075940|Mlec|109154|malectin	NM_175403|Mlec|109154|malectin
mm9_v1_chr4_+_11118855_11118930	1.29436	UCAAGUA	NM_009830|Ccne2|12448|cyclin E2	AK010929|Ccne2|12448|cyclin E2	AK031116|Ccne2|12448|cyclin E2	AK037791|Ccne2|12448|cyclin E2	AK167428|Ccne2|12448|cyclin E2
mm9_v1_chr10_+_84039622_84039691	1.29245	UCAAGUA	AK040850|Tcp11l2|216198|t-complex 11 (mouse) like 2	BC029663|Tcp11l2|216198|t-complex 11 (mouse) like 2	NM_146008|Tcp11l2|216198|t-complex 11 (mouse) like 2
mm9_v1_chr17_+_74738195_74738352	1.28591	UCAAGUA	BC046286|Spast|50850|spastin	NM_001162870|Spast|50850|spastin	NM_016962|Spast|50850|spastin	AK129282|Spast|50850|spastin
mm9_v1_chr11_+_60351159_60351225	1.28412	UCAAGUA	NM_172943|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)
mm9_v1_chr8_-_108351060_108351249	1.28027	UCAAGUA	AK173177|Ranbp10|74334|RAN binding protein 10	BC024698|Ranbp10|74334|RAN binding protein 10	AK048772|Ranbp10|74334|RAN binding protein 10	EU281316|Ranbp10|74334|RAN binding protein 10	AY337314|Ranbp10|74334|RAN binding protein 10	NM_145824|Ranbp10|74334|RAN binding protein 10
mm9_v1_chr2_+_69735301_69735369	1.2754	UCAAGUA	DQ924536|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3	NM_001081548|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3	NM_177783|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3	AK037622|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3
mm9_v1_chr3_+_9250566_9250566	1.27516	UCAAGUA	NM_177660|Zbtb10|229055|zinc finger and BTB domain containing 10
mm9_v1_chr9_+_113650560_113650629	1.27277	UCAAGUA	AJ276961|Clasp2|76499|CLIP associating protein 2	NM_001114347|Clasp2|76499|CLIP associating protein 2	AK034560|Clasp2|76499|CLIP associating protein 2
mm9_v1_chr14_-_63864060_63864107	1.26948	UCAAGUA	M98339|Gata4|14463|GATA binding protein 4	U85046|Gata4|14463|GATA binding protein 4	NM_008092|Gata4|14463|GATA binding protein 4	AB075549|Gata4|14463|GATA binding protein 4
mm9_v1_chr4_+_132194931_132195032	1.2637	UCAAGUA	AK164591|Eya3|14050|eyes absent 3 homolog (Drosophila)	NM_210071|Eya3|14050|eyes absent 3 homolog (Drosophila)	NM_211357|Eya3|14050|eyes absent 3 homolog (Drosophila)	AK144653|Eya3|14050|eyes absent 3 homolog (Drosophila)	NM_010166|Eya3|14050|eyes absent 3 homolog (Drosophila)	BC052860|Eya3|14050|eyes absent 3 homolog (Drosophila)	U81604|Eya3|14050|eyes absent 3 homolog (Drosophila)	AK017913|5830409B07Rik|76020|RIKEN cDNA 5830409B07 gene	BC063259|Eya3|14050|eyes absent 3 homolog (Drosophila)
mm9_v1_chr1_-_135557934_135557977	1.25338	UCAAGUA	AK148376|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK078105|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK145740|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK167700|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK041148|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK017663|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK035705|Zbed6|667118|zinc finger, BED domain containing 6	NM_144530|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr7_-_118226515_118226580	1.2519	UCAAGUA	AK150745|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	AK151637|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	AK144309|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	U76112|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	BC057673|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	BC127064|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	NM_001040131|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	NM_013507|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr3_+_101180976_101181070	1.24922	UCAAGUA	AK083000|Igsf3|78908|immunoglobulin superfamily, member 3	AK084011|Igsf3|78908|immunoglobulin superfamily, member 3	AK129151|Igsf3|78908|immunoglobulin superfamily, member 3	NM_207205|Igsf3|78908|immunoglobulin superfamily, member 3
mm9_v1_chr9_+_18096674_18096772	1.24741	UCAAGUA	AK003259|Chordc1|66917|cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	NM_025844|Chordc1|66917|cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	BC018374|Chordc1|66917|cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	AK012747|Chordc1|66917|cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	AK132696|Chordc1|66917|cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1
mm9_v1_chr15_+_81575277_81575277	1.24626	UCAAGUA	NM_001081016|Zc3h7b|20286|zinc finger CCCH type containing 7B
mm9_v1_chr6_-_83391623_83391671	1.24546	UCAAGUA	AK044758|Tet3|194388|tet oncogene family member 3	AK046543|Tet3|194388|tet oncogene family member 3	AK046552|Tet3|194388|tet oncogene family member 3	AK046553|Tet3|194388|tet oncogene family member 3	NM_183138|Tet3|194388|tet oncogene family member 3
mm9_v1_chr4_-_34830178_34830200	1.24439	UCAAGUA	AK017652|Zfp292|30046|zinc finger protein 292	AK018067|Zfp292|30046|zinc finger protein 292	NM_013889|Zfp292|30046|zinc finger protein 292	BC036997|Zfp292|30046|zinc finger protein 292
mm9_v1_chrX_+_148237785_148237953	1.23794	UCAAGUA	AK163416|Huwe1|59026|HECT, UBA and WWE domain containing 1	NM_021523|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK049460|Huwe1|59026|HECT, UBA and WWE domain containing 1	DQ097265|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK045183|Huwe1|59026|HECT, UBA and WWE domain containing 1	AY772010|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK165140|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK165648|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK031374|Huwe1|59026|HECT, UBA and WWE domain containing 1
mm9_v1_chr9_-_35075338_35075393	1.23309	UCAAGUA	BC051180|Fam118b|109229|family with sequence similarity 118, member B	NM_194257|Fam118b|109229|family with sequence similarity 118, member B	AK079397|Fam118b|109229|family with sequence similarity 118, member B	AK168168|Fam118b|109229|family with sequence similarity 118, member B	AK009486|Fam118b|109229|family with sequence similarity 118, member B	AK081206|Fam118b|109229|family with sequence similarity 118, member B	AK153897|Fam118b|109229|family with sequence similarity 118, member B	AK169810|Fam118b|109229|family with sequence similarity 118, member B	NM_175411|Fam118b|109229|family with sequence similarity 118, member B
mm9_v1_chr14_-_25065141_25065143	1.23131	UCAAGUA	AK147699|Dlg5|71228|discs, large homolog 5 (Drosophila)	NM_001163513|Dlg5|71228|discs, large homolog 5 (Drosophila)	NM_027726|Dlg5|71228|discs, large homolog 5 (Drosophila)
mm9_v1_chr1_-_30920095_30920100	1.22026	UCAAGUA	BC011226|Phf3|213109|PHD finger protein 3	BC032205|Phf3|213109|PHD finger protein 3	BC137913|Phf3|213109|PHD finger protein 3	NM_001081080|Phf3|213109|PHD finger protein 3
mm9_v1_chr5_+_119010687_119010751	1.21927	UCAAGUA	AK088795|Med13l|76199|mediator complex subunit 13-like	NM_172424|Med13l|76199|mediator complex subunit 13-like	AK154895|Med13l|76199|mediator complex subunit 13-like	AY338464|Med13l|76199|mediator complex subunit 13-like
mm9_v1_chr1_-_12980994_12981257	1.20068	UCAAGUA	BC117943|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	BC117944|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK048882|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK041736|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	NM_172841|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK028758|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1
mm9_v1_chr17_+_29169579_29169604	1.19968	UCAAGUA	NM_013663|Srsf3|20383|serine/arginine-rich splicing factor 3
mm9_v1_chr2_+_92061718_92061757	1.19588	UCAAGUA	NM_001109690|Phf21a|192285|PHD finger protein 21A	AK137085|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr17_+_86020173_86020181	1.19241	UCAAGUA	NM_011381|Six3|20473|sine oculis-related homeobox 3 homolog (Drosophila)
mm9_v1_chr19_-_28085534_28085655	1.18703	UCAAGUA	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr18_+_75979831_75979868	1.16589	UCAAGUA	BC070424|Zbtb7c|207259|zinc finger and BTB domain containing 7C	NM_145356|Zbtb7c|207259|zinc finger and BTB domain containing 7C	AK045522|Zbtb7c|207259|zinc finger and BTB domain containing 7C
mm9_v1_chr8_+_27229839_27230052	1.15198	UCAAGUA	AK162554|Rnf170|77733|ring finger protein 170	AK044579|Rnf170|77733|ring finger protein 170	AK153658|Rnf170|77733|ring finger protein 170	BC114210|Rnf170|77733|ring finger protein 170	NM_029965|Rnf170|77733|ring finger protein 170	AK042063|Rnf170|77733|ring finger protein 170	AK152760|Rnf170|77733|ring finger protein 170	AK020104|Rnf170|77733|ring finger protein 170	AK036051|Rnf170|77733|ring finger protein 170	BC138930|Rnf170|77733|ring finger protein 170	BC145718|Rnf170|77733|ring finger protein 170	BC031383|Rnf170|77733|ring finger protein 170	AK080591|Rnf170|77733|ring finger protein 170
mm9_v1_chr2_-_6805937_6806041	1.14591	UCAAGUA	AK042749|Celf2|14007|CUGBP, Elav-like family member 2	AK164112|Celf2|14007|CUGBP, Elav-like family member 2	AK052102|Celf2|14007|CUGBP, Elav-like family member 2	AK135166|Celf2|14007|CUGBP, Elav-like family member 2	BC026856|Celf2|14007|CUGBP, Elav-like family member 2	AF090697|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110228|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160293|Celf2|14007|CUGBP, Elav-like family member 2	NM_010160|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr7_+_108257288_108257396	1.14264	UCAAGUA	AK141949|Fchsd2|207278|FCH and double SH3 domains 2	NM_001146010|Fchsd2|207278|FCH and double SH3 domains 2	NM_199012|Fchsd2|207278|FCH and double SH3 domains 2	BC016532|Fchsd2|207278|FCH and double SH3 domains 2	AK140322|Fchsd2|207278|FCH and double SH3 domains 2	AK157054|Fchsd2|207278|FCH and double SH3 domains 2	AK156841|Fchsd2|207278|FCH and double SH3 domains 2	BC060647|Fchsd2|207278|FCH and double SH3 domains 2	AK165341|Fchsd2|207278|FCH and double SH3 domains 2	AK122368|Fchsd2|207278|FCH and double SH3 domains 2
mm9_v1_chr19_+_25685026_25685032	1.13949	UCAAGUA	AF541936|Dmrt3|240590|doublesex and mab-3 related transcription factor 3	NM_177360|Dmrt3|240590|doublesex and mab-3 related transcription factor 3	BC052041|Dmrt3|240590|doublesex and mab-3 related transcription factor 3
mm9_v1_chrX_+_156146532_156146595	1.13149	UCAAGUA	AK030839|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_021389|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK004636|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK020782|Sh3kbp1|58194|SH3-domain kinase binding protein 1	BC052863|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr11_-_69211724_69211741	1.12615	UCAAGUA	BC100316|Tmem88|67020|transmembrane protein 88	AK010789|Tmem88|67020|transmembrane protein 88	AK011240|Tmem88|67020|transmembrane protein 88	AK045149|Tmem88|67020|transmembrane protein 88	AK161789|Tmem88|67020|transmembrane protein 88	BC120912|Tmem88|67020|transmembrane protein 88	NM_025915|Tmem88|67020|transmembrane protein 88
mm9_v1_chr3_-_100293092_100293154	1.10274	UCAAGUA	BC037072|Fam46c|74645|family with sequence similarity 46, member C	BC120717|Fam46c|74645|family with sequence similarity 46, member C	BC120719|Fam46c|74645|family with sequence similarity 46, member C	BC046309|Fam46c|74645|family with sequence similarity 46, member C	NM_001142952|Fam46c|74645|family with sequence similarity 46, member C
mm9_v1_chr1_-_58026858_58026927	1.09843	UCAAGUA	AK032658|Kctd18|51960|potassium channel tetramerisation domain containing 18	AK132699|Kctd18|51960|potassium channel tetramerisation domain containing 18	AK053098|Kctd18|51960|potassium channel tetramerisation domain containing 18	AK079700|Kctd18|51960|potassium channel tetramerisation domain containing 18	NM_001159864|Kctd18|51960|potassium channel tetramerisation domain containing 18	NM_001159865|Kctd18|51960|potassium channel tetramerisation domain containing 18	NM_030211|Kctd18|51960|potassium channel tetramerisation domain containing 18
mm9_v1_chr18_+_83084023_83084023	1.08406	UCAAGUA	NM_001177464|Zfp516|329003|zinc finger protein 516
mm9_v1_chr2_+_12845664_12845700	1.07755	UCAAGUA	NM_008961|Pter|19212|phosphotriesterase related
mm9_v1_chr9_-_48644030_48644051	1.07386	UCAAGUA	AK040211|Zbtb16|235320|zinc finger and BTB domain containing 16	AK142947|Zbtb16|235320|zinc finger and BTB domain containing 16	NM_001033324|Zbtb16|235320|zinc finger and BTB domain containing 16
mm9_v1_chr6_+_86315639_86315728	1.07251	UCAAGUA	BC103775|Fam136a|66488|family with sequence similarity 136, member A	BC024049|Fam136a|66488|family with sequence similarity 136, member A	NM_025591|Fam136a|66488|family with sequence similarity 136, member A	AK008550|Fam136a|66488|family with sequence similarity 136, member A	AK005280|Fam136a|66488|family with sequence similarity 136, member A	AK141279|Fam136a|66488|family with sequence similarity 136, member A	CT010180|Fam136a|66488|family with sequence similarity 136, member A	BC013621|Fam136a|66488|family with sequence similarity 136, member A
mm9_v1_chr3_+_142257810_142257810	1.0692	UCAAGUA	AK077796|Gbp1|14468|guanylate binding protein 1	EF494422|Gbp1|14468|guanylate binding protein 1	NM_010259|Gbp1|14468|guanylate binding protein 1
mm9_v1_chr4_+_123582074_123582311	1.06334	UCAAGUA	BC048478|Mycbp|56309|c-myc binding protein	AK033289|Mycbp|56309|c-myc binding protein	AK077633|Mycbp|56309|c-myc binding protein	AK037661|Mycbp|56309|c-myc binding protein	AK077762|Mycbp|56309|c-myc binding protein	AK077995|Mycbp|56309|c-myc binding protein	AK145773|Mycbp|56309|c-myc binding protein	NM_019660|Mycbp|56309|c-myc binding protein	BC028344|Mycbp|56309|c-myc binding protein	AB015858|Mycbp|56309|c-myc binding protein
mm9_v1_chr19_+_11986887_11986895	1.0628	UCAAGUA	AK150301|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK170918|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	NM_172635|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK154102|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)
mm9_v1_chr2_+_172978566_172978589	1.0574	UCAAGUA	AK028046|Pck1|18534|phosphoenolpyruvate carboxykinase 1, cytosolic	AK080261|Pck1|18534|phosphoenolpyruvate carboxykinase 1, cytosolic	AK133496|Pck1|18534|phosphoenolpyruvate carboxykinase 1, cytosolic	AK149525|Pck1|18534|phosphoenolpyruvate carboxykinase 1, cytosolic	NM_011044|Pck1|18534|phosphoenolpyruvate carboxykinase 1, cytosolic	AK030327|Pck1|18534|phosphoenolpyruvate carboxykinase 1, cytosolic	BC028342|Pck1|18534|phosphoenolpyruvate carboxykinase 1, cytosolic	BC037629|Pck1|18534|phosphoenolpyruvate carboxykinase 1, cytosolic
mm9_v1_chr7_-_150155131_150155168	1.05506	UCAAGUA	BC019520|Ascl2|17173|achaete-scute complex homolog 2 (Drosophila)	AK010738|Ascl2|17173|achaete-scute complex homolog 2 (Drosophila)	AK167324|Ascl2|17173|achaete-scute complex homolog 2 (Drosophila)	NM_008554|Ascl2|17173|achaete-scute complex homolog 2 (Drosophila)
mm9_v1_chr7_+_97591287_97591327	1.05261	UCAAGUA	NM_145151|Crebzf|233490|CREB/ATF bZIP transcription factor
mm9_v1_chr16_+_33380860_33381006	1.03843	UCAAGUA	NM_011749|Zfp148|22661|zinc finger protein 148	AF316548|Zfp148|22661|zinc finger protein 148	X98096|Zfp148|22661|zinc finger protein 148	BC026144|Zfp148|22661|zinc finger protein 148
mm9_v1_chr16_+_94791713_94791812	1.03077	UCAAGUA	NM_007890|Dyrk1a|13548|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
mm9_v1_chr1_-_173957316_173957398	1.02535	UCAAGUA	AK033128|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AY035370|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AK129311|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	BC052195|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	NM_033509|Vangl2|93840|vang-like 2 (van gogh, Drosophila)
mm9_v1_chr8_+_74432504_74432561	1.02154	UCAAGUA	NM_001166645|Zfp882|382019|zinc finger protein 882	AK040385|Zfp882|382019|zinc finger protein 882	BC080687|Zfp882|382019|zinc finger protein 882
mm9_v1_chr9_-_75257729_75257901	1.01275	UCAAGUA	AK011505|Mapk6|50772|mitogen-activated protein kinase 6	AK044752|Mapk6|50772|mitogen-activated protein kinase 6	BC100385|Mapk6|50772|mitogen-activated protein kinase 6	NM_015806|Mapk6|50772|mitogen-activated protein kinase 6
mm9_v1_chr2_+_84890611_84890701	1.01068	UCAAGUA	NM_001081260|Tnks1bp1|228140|tankyrase 1 binding protein 1	BC150947|Tnks1bp1|228140|tankyrase 1 binding protein 1
mm9_v1_chr5_-_3803095_3803144	1.0106	UCAAGUA	NM_001003909|Ankib1|70797|ankyrin repeat and IBR domain containing 1	AK014523|Ankib1|70797|ankyrin repeat and IBR domain containing 1
mm9_v1_chr14_+_29318658_29318741	1.00566	UCAAGUA	NM_009524|Wnt5a|22418|wingless-related MMTV integration site 5A	AK031597|Wnt5a|22418|wingless-related MMTV integration site 5A	M89798|Wnt5a|22418|wingless-related MMTV integration site 5A
mm9_v1_chr9_-_14916551_14916551	0.98591	UCAAGUA	AK132457|Hephl1|244698|hephaestin-like 1	NM_001164797|Hephl1|244698|hephaestin-like 1
mm9_v1_chr6_-_72389491_72389552	0.979457	UCAAGUA	BC003451|Mat2a|232087|methionine adenosyltransferase II, alpha	AB070266|Mat2a|232087|methionine adenosyltransferase II, alpha	BC058360|Mat2a|232087|methionine adenosyltransferase II, alpha	AK145407|Mat2a|232087|methionine adenosyltransferase II, alpha	AK052764|Mat2a|232087|methionine adenosyltransferase II, alpha	AK133960|Mat2a|232087|methionine adenosyltransferase II, alpha	AK144189|Mat2a|232087|methionine adenosyltransferase II, alpha	AK150040|Mat2a|232087|methionine adenosyltransferase II, alpha	AK151281|Mat2a|232087|methionine adenosyltransferase II, alpha	AK160869|Mat2a|232087|methionine adenosyltransferase II, alpha	AK161852|Mat2a|232087|methionine adenosyltransferase II, alpha	AK164137|Mat2a|232087|methionine adenosyltransferase II, alpha	AK166671|Mat2a|232087|methionine adenosyltransferase II, alpha	AK168155|Mat2a|232087|methionine adenosyltransferase II, alpha	AK169705|Mat2a|232087|methionine adenosyltransferase II, alpha	AK034757|Mat2a|232087|methionine adenosyltransferase II, alpha	NM_145569|Mat2a|232087|methionine adenosyltransferase II, alpha
mm9_v1_chr13_-_58712170_58712237	0.979372	UCAAGUA	AF305211|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	BC010472|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	BC013783|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	BC037061|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	AK052784|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	AK085680|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	AK145077|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	AK164740|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	AK164752|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	NM_022317|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3
mm9_v1_chr12_-_86715612_86715842	0.974251	UCAAGUA	AK150605|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK152656|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	BC064755|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	BC085097|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK003676|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK084117|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK152643|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	NM_026775|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)
mm9_v1_chr19_+_59533179_59533179	0.974234	UCAAGUA	NM_010132|Emx2|13797|empty spiracles homolog 2 (Drosophila)
mm9_v1_chr5_-_31482504_31482530	0.973094	UCAAGUA	BC043100|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta	AK083585|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta	NM_027901|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta
mm9_v1_chr4_+_115457560_115457648	0.969832	UCAAGUA	BC044874|Atpaf1|230649|ATP synthase mitochondrial F1 complex assembly factor 1	NM_181040|Atpaf1|230649|ATP synthase mitochondrial F1 complex assembly factor 1
mm9_v1_chr4_-_133843746_133843812	0.966562	UCAAGUA	BC058514|Pdik1l|230809|PDLIM1 interacting kinase 1 like	NM_146156|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK164975|Pdik1l|230809|PDLIM1 interacting kinase 1 like
mm9_v1_chr8_-_116372637_116372742	0.951022	UCAAGUA	AK035797|Adamts18|208936|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	AK081122|Adamts18|208936|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	NM_172466|Adamts18|208936|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	AK053851|Adamts18|208936|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18
mm9_v1_chrX_-_6952873_6952997	0.923205	UCAAGUA	BC137612|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome	AK028249|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome	NM_019461|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome
mm9_v1_chr2_-_7317513_7317626	0.921855	UCAAGUA	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr7_+_66484094_66484221	0.920995	UCAAGUA	AK029133|Ube3a|22215|ubiquitin protein ligase E3A	NM_173010|Ube3a|22215|ubiquitin protein ligase E3A	NM_001033962|Ube3a|22215|ubiquitin protein ligase E3A	NM_011668|Ube3a|22215|ubiquitin protein ligase E3A	BC131658|Ube3a|22215|ubiquitin protein ligase E3A	BC131659|Ube3a|22215|ubiquitin protein ligase E3A	AK083795|Ube3a|22215|ubiquitin protein ligase E3A	AK220549|Ube3a|22215|ubiquitin protein ligase E3A
mm9_v1_chr6_+_21935907_21936001	0.920988	UCAAGUA	AK087585|A430107O13Rik|214642|RIKEN cDNA A430107O13 gene	NM_001081351|A430107O13Rik|214642|RIKEN cDNA A430107O13 gene	AK033229|A430107O13Rik|214642|RIKEN cDNA A430107O13 gene	AK040587|A430107O13Rik|214642|RIKEN cDNA A430107O13 gene
mm9_v1_chr6_+_17413930_17414106	0.919542	UCAAGUA	NM_008591|Met|17295|met proto-oncogene	AK170560|Met|17295|met proto-oncogene	AK148258|Met|17295|met proto-oncogene
mm9_v1_chr18_-_44821919_44821954	0.917375	UCAAGUA	AK054528|Mcc|328949|mutated in colorectal cancers	NM_001085374|Mcc|328949|mutated in colorectal cancers	AK086823|Mcc|328949|mutated in colorectal cancers
mm9_v1_chr2_-_160934743_160934810	0.913181	UCAAGUA	BC145629|Chd6|71389|chromodomain helicase DNA binding protein 6	BC150806|Chd6|71389|chromodomain helicase DNA binding protein 6	AK018129|Chd6|71389|chromodomain helicase DNA binding protein 6	AK040495|Chd6|71389|chromodomain helicase DNA binding protein 6	AK142177|Chd6|71389|chromodomain helicase DNA binding protein 6	AK086807|Chd6|71389|chromodomain helicase DNA binding protein 6	AK162083|Chd6|71389|chromodomain helicase DNA binding protein 6	NM_173368|Chd6|71389|chromodomain helicase DNA binding protein 6	AK080892|Chd6|71389|chromodomain helicase DNA binding protein 6	AK080927|Chd6|71389|chromodomain helicase DNA binding protein 6
mm9_v1_chr11_-_102180374_102180491	0.895888	UCAAGUA	BC004676|Ubtf|21429|upstream binding transcription factor, RNA polymerase I	NM_011551|Ubtf|21429|upstream binding transcription factor, RNA polymerase I
mm9_v1_chr2_+_160471623_160471632	0.871613	UCAAGUA	AK145538|Top1|21969|topoisomerase (DNA) I	NM_009408|Top1|21969|topoisomerase (DNA) I
mm9_v1_chr6_-_143048580_143048646	0.861729	UCAAGUA	AK029825|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	AK021056|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	BC027763|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	AK143732|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	NM_001109688|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	NM_029081|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	NM_029897|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene
mm9_v1_chr16_-_50432421_50432504	0.859415	UCAAGUA	AK044855|Bbx|70508|bobby sox homolog (Drosophila)	BC019456|Bbx|70508|bobby sox homolog (Drosophila)	BC066821|Bbx|70508|bobby sox homolog (Drosophila)	AF276951|Bbx|70508|bobby sox homolog (Drosophila)	BC064763|Bbx|70508|bobby sox homolog (Drosophila)	BC057869|Bbx|70508|bobby sox homolog (Drosophila)	AK157813|Bbx|70508|bobby sox homolog (Drosophila)	AK049516|Bbx|70508|bobby sox homolog (Drosophila)	AF454943|Bbx|70508|bobby sox homolog (Drosophila)	AK017487|Bbx|70508|bobby sox homolog (Drosophila)	AK029747|Bbx|70508|bobby sox homolog (Drosophila)	AK167724|Bbx|70508|bobby sox homolog (Drosophila)	NM_027444|Bbx|70508|bobby sox homolog (Drosophila)
mm9_v1_chr5_-_124875921_124875965	0.841223	UCAAGUA	NM_001081203|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK077133|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK165852|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)
mm9_v1_chr19_-_44144175_44144240	0.834744	UCAAGUA	NM_145502|Erlin1|226144|ER lipid raft associated 1	BC021793|Erlin1|226144|ER lipid raft associated 1	BC011220|Erlin1|226144|ER lipid raft associated 1
mm9_v1_chr4_+_154975473_154975535	0.83265	UCAAGUA	AK080215|Slc35e2|320541|solute carrier family 35, member E2	BC058728|Slc35e2|320541|solute carrier family 35, member E2	NM_177186|Slc35e2|320541|solute carrier family 35, member E2
mm9_v1_chr4_+_148178500_148178594	0.832073	UCAAGUA	BC075673|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_001159344|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_027195|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK048565|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK144492|Casz1|69743|castor homolog 1, zinc finger (Drosophila)
mm9_v1_chr1_+_153602492_153602592	0.825551	UCAAGUA	AB188342|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	NM_001039644|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	AK141326|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	AK143252|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC138658|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC138659|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC145357|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC145358|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3
mm9_v1_chr11_-_11937330_11937512	0.821076	UCAAGUA	AK030727|Grb10|14783|growth factor receptor bound protein 10	BC053842|Grb10|14783|growth factor receptor bound protein 10	AF022072|Grb10|14783|growth factor receptor bound protein 10	AK012646|Grb10|14783|growth factor receptor bound protein 10	AK163841|Grb10|14783|growth factor receptor bound protein 10	AK032927|Grb10|14783|growth factor receptor bound protein 10	NM_010345|Grb10|14783|growth factor receptor bound protein 10	FJ425892|Grb10|14783|growth factor receptor bound protein 10
mm9_v1_chr12_+_85792371_85792472	0.818921	UCAAGUA	BC120496|Lin52|217708|lin-52 homolog (C. elegans)	BC137693|Lin52|217708|lin-52 homolog (C. elegans)	AK030923|Lin52|217708|lin-52 homolog (C. elegans)	NM_173756|Lin52|217708|lin-52 homolog (C. elegans)
mm9_v1_chr7_-_130513339_130513430	0.817504	UCAAGUA	AK036468|Arhgap17|70497|Rho GTPase activating protein 17	AK036617|Arhgap17|70497|Rho GTPase activating protein 17	AK152266|Arhgap17|70497|Rho GTPase activating protein 17	AK152301|Arhgap17|70497|Rho GTPase activating protein 17	AK149986|Arhgap17|70497|Rho GTPase activating protein 17	AK147010|Arhgap17|70497|Rho GTPase activating protein 17	AK046411|Arhgap17|70497|Rho GTPase activating protein 17	AK161636|Arhgap17|70497|Rho GTPase activating protein 17	NM_001122640|Arhgap17|70497|Rho GTPase activating protein 17	NM_001122641|Arhgap17|70497|Rho GTPase activating protein 17	NM_001122642|Arhgap17|70497|Rho GTPase activating protein 17	NM_001122643|Arhgap17|70497|Rho GTPase activating protein 17	NM_144529|Arhgap17|70497|Rho GTPase activating protein 17
mm9_v1_chr19_-_55390300_55390527	0.816486	UCAAGUA	AK179827|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK181252|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK206189|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK217393|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK185086|Zdhhc6|66980|zinc finger, DHHC domain containing 6	BC019614|Zdhhc6|66980|zinc finger, DHHC domain containing 6	BC033317|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK077693|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK139707|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK035172|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK077838|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK011373|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK144128|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK154741|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK038177|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK157494|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK010296|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK168497|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK050388|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK159304|Zdhhc6|66980|zinc finger, DHHC domain containing 6	NM_001033573|Zdhhc6|66980|zinc finger, DHHC domain containing 6	NM_025883|Zdhhc6|66980|zinc finger, DHHC domain containing 6
mm9_v1_chr2_-_59963796_59963833	0.815592	UCAAGUA	NM_001001182|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK147737|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B
mm9_v1_chr10_+_34109784_34109787	0.815113	UCAAGUA	NM_009925|Col10a1|12813|collagen, type X, alpha 1
mm9_v1_chr18_-_35091570_35091661	0.807276	UCAAGUA	BC013717|Etf1|225363|eukaryotic translation termination factor 1	AK170221|Etf1|225363|eukaryotic translation termination factor 1	AK077559|Etf1|225363|eukaryotic translation termination factor 1	AK049607|Etf1|225363|eukaryotic translation termination factor 1	AK164020|Etf1|225363|eukaryotic translation termination factor 1	AK139933|Etf1|225363|eukaryotic translation termination factor 1	AK166740|Etf1|225363|eukaryotic translation termination factor 1	AK169345|Etf1|225363|eukaryotic translation termination factor 1	NM_144866|Etf1|225363|eukaryotic translation termination factor 1
mm9_v1_chr16_-_98183757_98183799	0.806896	UCAAGUA	BC051176|Zfp295|114565|zinc finger protein 295	AK129313|Zfp295|114565|zinc finger protein 295	AK031118|Zfp295|114565|zinc finger protein 295	AK080932|Zfp295|114565|zinc finger protein 295	AK145072|Zfp295|114565|zinc finger protein 295	AK034057|Zfp295|114565|zinc finger protein 295	NM_001081684|Zfp295|114565|zinc finger protein 295	NM_001081685|Zfp295|114565|zinc finger protein 295	NM_175428|Zfp295|114565|zinc finger protein 295	AK170928|Zfp295|114565|zinc finger protein 295
mm9_v1_chr5_+_103854200_103854274	0.802848	UCAAGUA	AK014577|Ptpn13|19249|protein tyrosine phosphatase, non-receptor type 13	AK080313|Ptpn13|19249|protein tyrosine phosphatase, non-receptor type 13	NM_011204|Ptpn13|19249|protein tyrosine phosphatase, non-receptor type 13	BC023913|Ptpn13|19249|protein tyrosine phosphatase, non-receptor type 13	BC057205|Ptpn13|19249|protein tyrosine phosphatase, non-receptor type 13	AK143394|Ptpn13|19249|protein tyrosine phosphatase, non-receptor type 13	AK084198|Ptpn13|19249|protein tyrosine phosphatase, non-receptor type 13
mm9_v1_chr8_+_63702967_63703040	0.798895	UCAAGUA	NM_021506|Sh3rf1|59009|SH3 domain containing ring finger 1	BC060113|Sh3rf1|59009|SH3 domain containing ring finger 1	BC060696|Sh3rf1|59009|SH3 domain containing ring finger 1	AK088003|Sh3rf1|59009|SH3 domain containing ring finger 1	AK148137|Sh3rf1|59009|SH3 domain containing ring finger 1
mm9_v1_chr8_+_48618988_48619067	0.790758	UCAAGUA	NM_203507|Rwdd4a|192174|RWD domain containing 4A	AK005797|Rwdd4a|192174|RWD domain containing 4A	AK016505|Rwdd4a|192174|RWD domain containing 4A	AK004597|Rwdd4a|192174|RWD domain containing 4A	BC016198|Rwdd4a|192174|RWD domain containing 4A
mm9_v1_chr5_-_115584921_115584983	0.789859	UCAAGUA	AK045128|Unc119b|106840|unc-119 homolog B (C. elegans)	BC115529|Unc119b|106840|unc-119 homolog B (C. elegans)	BC112388|Unc119b|106840|unc-119 homolog B (C. elegans)	AK082614|Unc119b|106840|unc-119 homolog B (C. elegans)	NM_175352|Unc119b|106840|unc-119 homolog B (C. elegans)
mm9_v1_chr3_+_21975544_21975859	0.78625	UCAAGUA	AK036064|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1	NM_030732|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1	AK033347|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1
mm9_v1_chr2_+_179854008_179854109	0.77668	UCAAGUA	AK145292|Osbpl2|228983|oxysterol binding protein-like 2	AK170669|Osbpl2|228983|oxysterol binding protein-like 2	NM_144500|Osbpl2|228983|oxysterol binding protein-like 2	BC026804|Osbpl2|228983|oxysterol binding protein-like 2	AK170306|Osbpl2|228983|oxysterol binding protein-like 2	AK166059|Osbpl2|228983|oxysterol binding protein-like 2
mm9_v1_chr13_-_32873647_32873647	0.776387	UCAAGUA	NM_001166030|Mylk4|238564|myosin light chain kinase family, member 4
mm9_v1_chrX_+_155970593_155970627	0.768861	UCAAGUA	AK044001|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene	NM_001033472|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene
mm9_v1_chr11_-_86071041_86071069	0.759658	UCAAGUA	AK037055|Ints2|70422|integrator complex subunit 2	AK129323|Ints2|70422|integrator complex subunit 2	NM_027421|Ints2|70422|integrator complex subunit 2
mm9_v1_chr19_+_18787654_18787754	0.759305	UCAAGUA	AK145019|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	AK155389|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	AK083631|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	NM_177640|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	BC020125|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene
mm9_v1_chrX_-_108651553_108651553	0.747235	UCAAGUA	NM_025949|Rps6ka6|67071|ribosomal protein S6 kinase polypeptide 6
mm9_v1_chr16_-_35363927_35364003	0.745952	UCAAGUA	AK037540|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	AK044615|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	AK007341|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	AK082516|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	NM_133704|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)
mm9_v1_chr17_-_88464582_88464624	0.743127	UCAAGUA	BC117884|Fbxo11|225055|F-box protein 11	BC117885|Fbxo11|225055|F-box protein 11	BC128479|Fbxo11|225055|F-box protein 11	NM_001081034|Fbxo11|225055|F-box protein 11
mm9_v1_chr9_+_37335673_37335728	0.739653	UCAAGUA	NM_027102|Esam|69524|endothelial cell-specific adhesion molecule	AK156399|Esam|69524|endothelial cell-specific adhesion molecule	BC019460|Esam|69524|endothelial cell-specific adhesion molecule	BC049249|Esam|69524|endothelial cell-specific adhesion molecule	AK009223|Esam|69524|endothelial cell-specific adhesion molecule	AF361882|Esam|69524|endothelial cell-specific adhesion molecule
mm9_v1_chr5_-_89105135_89105221	0.736767	UCAAGUA	AK045986|Grsf1|231413|G-rich RNA sequence binding factor 1	AK044889|Grsf1|231413|G-rich RNA sequence binding factor 1	AK077782|Grsf1|231413|G-rich RNA sequence binding factor 1	NM_178700|Grsf1|231413|G-rich RNA sequence binding factor 1
mm9_v1_chr11_+_105042843_105042862	0.734411	UCAAGUA	AK165667|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)	NM_001112705|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)	NM_011903|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)
mm9_v1_chr11_-_102178559_102178600	0.733591	UCAAGUA	AK158861|Ubtf|21429|upstream binding transcription factor, RNA polymerase I	NM_001044383|Ubtf|21429|upstream binding transcription factor, RNA polymerase I
mm9_v1_chr3_-_58329780_58329826	0.730048	UCAAGUA	NM_030685|Serp1|28146|stress-associated endoplasmic reticulum protein 1
mm9_v1_chr7_-_26262552_26262648	0.72857	UCAAGUA	AB236328|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	AB236329|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	AB236330|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	AB236331|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	AB236332|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	X53084|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	X67280|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	X67281|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	X67283|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	M96934|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	M96935|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	BC016891|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	AK085749|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	M77196|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	NM_001039185|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	NM_001039186|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	NM_001039187|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1	NM_011926|Ceacam1|26365|carcinoembryonic antigen-related cell adhesion molecule 1
mm9_v1_chr4_+_116667944_116667979	0.727246	UCAAGUA	BC070411|Hectd3|76608|HECT domain containing 3	NM_175244|Hectd3|76608|HECT domain containing 3
mm9_v1_chr2_-_101637773_101637865	0.726667	UCAAGUA	BC048394|Prr5l|72446|proline rich 5 like	AK030499|Prr5l|72446|proline rich 5 like	NM_001083810|Prr5l|72446|proline rich 5 like	NM_175181|Prr5l|72446|proline rich 5 like	AK145981|Prr5l|72446|proline rich 5 like
mm9_v1_chrX_-_71330931_71331012	0.725632	UCAAGUA	AF158181|Mecp2|17257|methyl CpG binding protein 2	NM_010788|Mecp2|17257|methyl CpG binding protein 2	AK041453|Mecp2|17257|methyl CpG binding protein 2	BC027153|Mecp2|17257|methyl CpG binding protein 2	AK158664|Mecp2|17257|methyl CpG binding protein 2	NM_001081979|Mecp2|17257|methyl CpG binding protein 2
mm9_v1_chr10_+_119664096_119664177	0.71826	UCAAGUA	AK004503|Llph|66225|LLP homolog, long-term synaptic facilitation (Aplysia)	NM_025431|Llph|66225|LLP homolog, long-term synaptic facilitation (Aplysia)	BC024098|Llph|66225|LLP homolog, long-term synaptic facilitation (Aplysia)	BC096681|Llph|66225|LLP homolog, long-term synaptic facilitation (Aplysia)	BC106103|Llph|66225|LLP homolog, long-term synaptic facilitation (Aplysia)	AK007375|Llph|66225|LLP homolog, long-term synaptic facilitation (Aplysia)	AK158700|Llph|66225|LLP homolog, long-term synaptic facilitation (Aplysia)
mm9_v1_chr18_-_81183260_81183316	0.717942	UCAAGUA	BC072631|Sall3|20689|sal-like 3 (Drosophila)	NM_178280|Sall3|20689|sal-like 3 (Drosophila)
mm9_v1_chr5_+_75548309_75548318	0.714711	UCAAGUA	NM_011058|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	AK081664|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide
mm9_v1_chr1_-_132612309_132612397	0.709302	UCAAGUA	X98847|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	BC051014|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	BC018418|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	AK146744|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	NM_008825|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
mm9_v1_chr8_+_34496796_34496796	0.706388	UCAAGUA	AF479672|Purg|75029|purine-rich element binding protein G	AF479673|Purg|75029|purine-rich element binding protein G	BC116406|Purg|75029|purine-rich element binding protein G	NM_001098233|Purg|75029|purine-rich element binding protein G	NM_152821|Purg|75029|purine-rich element binding protein G
mm9_v1_chr10_-_66559568_66559740	0.701588	UCAAGUA	AY562231|Reep3|28193|receptor accessory protein 3	AK154559|Reep3|28193|receptor accessory protein 3	AK047728|Reep3|28193|receptor accessory protein 3	AK079649|Reep3|28193|receptor accessory protein 3	NM_178606|Reep3|28193|receptor accessory protein 3	BC004607|Reep3|28193|receptor accessory protein 3	AK008058|Reep3|28193|receptor accessory protein 3	AK012403|Reep3|28193|receptor accessory protein 3	AK005026|Reep3|28193|receptor accessory protein 3	AK028868|Reep3|28193|receptor accessory protein 3
mm9_v1_chr5_+_125002866_125002933	0.696637	UCAAGUA	AK154422|Ddx55|67848|DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	NM_001190795|Ddx55|67848|DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	NM_026409|Ddx55|67848|DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	AK167149|Ddx55|67848|DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	AK012782|Ddx55|67848|DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	AK077525|Ddx55|67848|DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	AK129402|Ddx55|67848|DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	AK033741|Ddx55|67848|DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	BC117786|Ddx55|67848|DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	BC117787|Ddx55|67848|DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	BC043052|Ddx55|67848|DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	AK017554|Ddx55|67848|DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
mm9_v1_chr5_+_124889925_124890006	0.695205	UCAAGUA	NM_030241|Setd8|67956|SET domain containing (lysine methyltransferase) 8	AK030904|Setd8|67956|SET domain containing (lysine methyltransferase) 8	AK088097|Setd8|67956|SET domain containing (lysine methyltransferase) 8	BC108333|Setd8|67956|SET domain containing (lysine methyltransferase) 8
mm9_v1_chr1_-_36996371_36996496	0.684978	UCAAGUA	AK139317|Tmem131|56030|transmembrane protein 131	NM_018872|Tmem131|56030|transmembrane protein 131
mm9_v1_chr13_+_47218048_47218098	0.677707	UCAAGUA	AK038964|Rnf144b|218215|ring finger protein 144B	AK053529|Rnf144b|218215|ring finger protein 144B	NM_146042|Rnf144b|218215|ring finger protein 144B
mm9_v1_chr5_-_90795190_90795275	0.67383	UCAAGUA	AK031350|Ankrd17|81702|ankyrin repeat domain 17	NM_030886|Ankrd17|81702|ankyrin repeat domain 17	NM_198010|Ankrd17|81702|ankyrin repeat domain 17
mm9_v1_chr4_-_107973683_107973743	0.672116	UCAAGUA	AK166278|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK148335|Zyg11b|414872|zyg-ll homolog B (C. elegans)	NM_001033634|Zyg11b|414872|zyg-ll homolog B (C. elegans)
mm9_v1_chr5_+_75552144_75552190	0.671067	UCAAGUA	AK163952|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	BC053036|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	NM_001083316|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide
mm9_v1_chr4_-_46151281_46151362	0.668077	UCAAGUA	BC057893|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	AK165359|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	AK155456|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	AK028258|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	NM_173033|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	AK089417|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2
mm9_v1_chr11_+_43495499_43495538	0.665572	UCAAGUA	NM_001164231|Pwwp2a|70802|PWWP domain containing 2A	NM_027557|Pwwp2a|70802|PWWP domain containing 2A	AK173305|Pwwp2a|70802|PWWP domain containing 2A
mm9_v1_chr3_+_115591053_115591114	0.660549	UCAAGUA	AK045127|Dph5|69740|DPH5 homolog (S. cerevisiae)	AK046753|Dph5|69740|DPH5 homolog (S. cerevisiae)	AK034652|Dph5|69740|DPH5 homolog (S. cerevisiae)	BC060372|Dph5|69740|DPH5 homolog (S. cerevisiae)	NM_027193|Dph5|69740|DPH5 homolog (S. cerevisiae)	AK010475|Dph5|69740|DPH5 homolog (S. cerevisiae)	AK045548|Dph5|69740|DPH5 homolog (S. cerevisiae)	AK046024|Dph5|69740|DPH5 homolog (S. cerevisiae)
mm9_v1_chr18_-_44971835_44971845	0.65519	UCAAGUA	AK158266|Mcc|328949|mutated in colorectal cancers	NM_001085373|Mcc|328949|mutated in colorectal cancers
mm9_v1_chr7_-_38892432_38892565	0.65085	UCAAGUA	AK089950|Ccne1|12447|cyclin E1	AK163046|Ccne1|12447|cyclin E1	AK165658|Ccne1|12447|cyclin E1	BC106191|Ccne1|12447|cyclin E1	NM_007633|Ccne1|12447|cyclin E1	BC062152|Ccne1|12447|cyclin E1	BC084588|Ccne1|12447|cyclin E1
mm9_v1_chr9_+_108941083_108941178	0.649699	UCAAGUA	AF520699|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	AK150460|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	AK151632|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	BC010238|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	AK033545|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	AK009225|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	NM_025858|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	AK090373|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	AK045368|Shisa5|66940|shisa homolog 5 (Xenopus laevis)
mm9_v1_chr1_+_88483674_88483733	0.641551	UCAAGUA	AK081309|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	NM_172974|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	AK053615|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	AK168740|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	AK170140|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	AF071317|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	BC012659|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)
mm9_v1_chr14_-_35401654_35401841	0.641097	UCAAGUA	AF228057|Ldb3|24131|LIM domain binding 3	AF228058|Ldb3|24131|LIM domain binding 3	AY206011|Ldb3|24131|LIM domain binding 3	AY206015|Ldb3|24131|LIM domain binding 3	AK172980|Ldb3|24131|LIM domain binding 3	NM_001039074|Ldb3|24131|LIM domain binding 3	BC138793|Ldb3|24131|LIM domain binding 3	BC145420|Ldb3|24131|LIM domain binding 3	AK142292|Ldb3|24131|LIM domain binding 3	AF114378|Ldb3|24131|LIM domain binding 3	AY206012|Ldb3|24131|LIM domain binding 3	AF114379|Ldb3|24131|LIM domain binding 3	AY206013|Ldb3|24131|LIM domain binding 3	BC099596|Ldb3|24131|LIM domain binding 3
mm9_v1_chr3_+_79433000_79433076	0.637762	UCAAGUA	NM_029482|4930579G24Rik|75939|RIKEN cDNA 4930579G24 gene	AK137776|4930579G24Rik|75939|RIKEN cDNA 4930579G24 gene	BC052483|4930579G24Rik|75939|RIKEN cDNA 4930579G24 gene
mm9_v1_chr7_+_4691716_4691802	0.637268	UCAAGUA	AY555193|Suv420h2|232811|suppressor of variegation 4-20 homolog 2 (Drosophila)	NM_001115018|Suv420h2|232811|suppressor of variegation 4-20 homolog 2 (Drosophila)	NM_146177|Suv420h2|232811|suppressor of variegation 4-20 homolog 2 (Drosophila)	AK154848|Suv420h2|232811|suppressor of variegation 4-20 homolog 2 (Drosophila)	AK137449|Suv420h2|232811|suppressor of variegation 4-20 homolog 2 (Drosophila)	BC024816|Suv420h2|232811|suppressor of variegation 4-20 homolog 2 (Drosophila)
mm9_v1_chr9_+_121628258_121628322	0.635672	UCAAGUA	AK163916|Nktr|18087|natural killer tumor recognition sequence	L04289|Nktr|18087|natural killer tumor recognition sequence	NM_010918|Nktr|18087|natural killer tumor recognition sequence
mm9_v1_chr9_+_108957402_108957503	0.632865	UCAAGUA	AK081060|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	AK020877|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	AK018291|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	NM_026381|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	BC057089|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	BC017600|Shisa5|66940|shisa homolog 5 (Xenopus laevis)
mm9_v1_chr15_-_71864639_71864656	0.624641	UCAAGUA	NM_027174|Col22a1|69700|collagen, type XXII, alpha 1
mm9_v1_chr8_+_111238543_111238543	0.62248	UCAAGUA	D26046|Zfhx3|11906|zinc finger homeobox 3	NM_007496|Zfhx3|11906|zinc finger homeobox 3
mm9_v1_chr1_-_158869401_158869517	0.621368	UCAAGUA	AK019543|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_001159966|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2
mm9_v1_chr4_-_148001104_148001104	0.620188	UCAAGUA	NM_001003898|Tardbp|230908|TAR DNA binding protein	NM_001003899|Tardbp|230908|TAR DNA binding protein	NM_001008545|Tardbp|230908|TAR DNA binding protein	NM_001008546|Tardbp|230908|TAR DNA binding protein	NM_145556|Tardbp|230908|TAR DNA binding protein
mm9_v1_chr18_+_39152776_39152837	0.617582	UCAAGUA	AK011368|Arhgap26|71302|Rho GTPase activating protein 26	NM_175164|Arhgap26|71302|Rho GTPase activating protein 26
mm9_v1_chr7_+_140829357_140829384	0.617113	UCAAGUA	NM_178115|2700050L05Rik|214764|RIKEN cDNA 2700050L05 gene	AK052387|2700050L05Rik|214764|RIKEN cDNA 2700050L05 gene
mm9_v1_chr1_-_135817945_135817982	0.616306	UCAAGUA	AK037150|Prelp|116847|proline arginine-rich end leucine-rich repeat	BC019775|Prelp|116847|proline arginine-rich end leucine-rich repeat	AK047480|Prelp|116847|proline arginine-rich end leucine-rich repeat	NM_054077|Prelp|116847|proline arginine-rich end leucine-rich repeat
mm9_v1_chr15_+_59480204_59480213	0.611065	UCAAGUA	AK033358|Trib1|211770|tribbles homolog 1 (Drosophila)	AK028626|Trib1|211770|tribbles homolog 1 (Drosophila)	AK040738|Trib1|211770|tribbles homolog 1 (Drosophila)	AK041212|Trib1|211770|tribbles homolog 1 (Drosophila)	AK162876|Trib1|211770|tribbles homolog 1 (Drosophila)	NM_144549|Trib1|211770|tribbles homolog 1 (Drosophila)
mm9_v1_chr9_-_69608633_69608746	0.609377	UCAAGUA	X92592|Foxb1|64290|forkhead box B1	U04198|Foxb1|64290|forkhead box B1	U90538|Foxb1|64290|forkhead box B1	NM_022378|Foxb1|64290|forkhead box B1
mm9_v1_chr19_+_7568894_7569107	0.599298	UCAAGUA	NM_146091|Atl3|109168|atlastin GTPase 3	AK147720|Atl3|109168|atlastin GTPase 3	AK170550|Atl3|109168|atlastin GTPase 3	AK077752|Atl3|109168|atlastin GTPase 3	AK028842|Atl3|109168|atlastin GTPase 3	AK030660|Atl3|109168|atlastin GTPase 3	AK169476|Atl3|109168|atlastin GTPase 3	BC017138|Atl3|109168|atlastin GTPase 3	AK014617|Atl3|109168|atlastin GTPase 3
mm9_v1_chr14_-_26588341_26588548	0.597263	UCAAGUA	NM_001101433|Zcchc24|71918|zinc finger, CCHC domain containing 24	BC147263|Zcchc24|71918|zinc finger, CCHC domain containing 24	BC147264|Zcchc24|71918|zinc finger, CCHC domain containing 24
mm9_v1_chr2_-_180436533_180436806	0.595024	UCAAGUA	BC029110|Dido1|23856|death inducer-obliterator 1	AJ238332|Dido1|23856|death inducer-obliterator 1	AY425951|Dido1|23856|death inducer-obliterator 1	AY425952|Dido1|23856|death inducer-obliterator 1	AK044919|Dido1|23856|death inducer-obliterator 1	AK083334|Dido1|23856|death inducer-obliterator 1	AK042474|Dido1|23856|death inducer-obliterator 1	NM_011805|Dido1|23856|death inducer-obliterator 1	NM_175551|Dido1|23856|death inducer-obliterator 1	AK014422|Dido1|23856|death inducer-obliterator 1
mm9_v1_chr2_+_157854457_157854551	0.589098	UCAAGUA	BC028819|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	BC042447|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	BC054350|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	NM_027434|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	AK139995|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B
mm9_v1_chr3_+_89234758_89234758	0.588287	UCAAGUA	AK132759|Pygo2|68911|pygopus 2	NM_026869|Pygo2|68911|pygopus 2
mm9_v1_chr11_+_4157570_4157570	0.586906	UCAAGUA	NM_008501|Lif|16878|leukemia inhibitory factor
mm9_v1_chr12_+_103214174_103214251	0.586542	UCAAGUA	AK147746|Cpsf2|51786|cleavage and polyadenylation specific factor 2	NM_016856|Cpsf2|51786|cleavage and polyadenylation specific factor 2	AF012822|Cpsf2|51786|cleavage and polyadenylation specific factor 2	AK054372|Cpsf2|51786|cleavage and polyadenylation specific factor 2	AK140869|Cpsf2|51786|cleavage and polyadenylation specific factor 2	AK141325|Cpsf2|51786|cleavage and polyadenylation specific factor 2	BC013628|Cpsf2|51786|cleavage and polyadenylation specific factor 2
mm9_v1_chr11_+_4035162_4035238	0.586232	UCAAGUA	NM_027859|Rnf215|71673|ring finger protein 215	AK154140|Rnf215|71673|ring finger protein 215	AK002414|Rnf215|71673|ring finger protein 215	AK047194|Rnf215|71673|ring finger protein 215	BC115907|Rnf215|71673|ring finger protein 215	BC115908|Rnf215|71673|ring finger protein 215	BC103627|Rnf215|71673|ring finger protein 215
mm9_v1_chr11_+_83664370_83664376	0.581111	UCAAGUA	AK004837|Hnf1b|21410|HNF1 homeobox B	NM_009330|Hnf1b|21410|HNF1 homeobox B
mm9_v1_chr13_+_46513668_46513668	0.579873	UCAAGUA	NM_001081425|Rbm24|666794|RNA binding motif protein 24
mm9_v1_chr11_+_90499446_90499511	0.579793	UCAAGUA	AK008096|Cox11|69802|COX11 homolog, cytochrome c oxidase assembly protein (yeast)	BC061233|Cox11|69802|COX11 homolog, cytochrome c oxidase assembly protein (yeast)	AK172067|Cox11|69802|COX11 homolog, cytochrome c oxidase assembly protein (yeast)	AK143937|Cox11|69802|COX11 homolog, cytochrome c oxidase assembly protein (yeast)	NM_199008|Cox11|69802|COX11 homolog, cytochrome c oxidase assembly protein (yeast)
mm9_v1_chr5_-_89104575_89104676	0.576545	UCAAGUA	AK168385|Grsf1|231413|G-rich RNA sequence binding factor 1	AK168459|Grsf1|231413|G-rich RNA sequence binding factor 1	NM_001098476|Grsf1|231413|G-rich RNA sequence binding factor 1
mm9_v1_chr14_-_69903072_69903169	0.574477	UCAAGUA	AF288621|Slc25a37|67712|solute carrier family 25, member 37	AF361699|Slc25a37|67712|solute carrier family 25, member 37	AK050414|Slc25a37|67712|solute carrier family 25, member 37	NM_026331|Slc25a37|67712|solute carrier family 25, member 37	AK006155|Slc25a37|67712|solute carrier family 25, member 37
mm9_v1_chr11_+_97660946_97661134	0.573212	UCAAGUA	X96702|Lasp1|16796|LIM and SH3 protein 1	AK148858|Lasp1|16796|LIM and SH3 protein 1	AK034404|Lasp1|16796|LIM and SH3 protein 1	AK049199|Lasp1|16796|LIM and SH3 protein 1	AK078445|Lasp1|16796|LIM and SH3 protein 1	AK168521|Lasp1|16796|LIM and SH3 protein 1	AK169381|Lasp1|16796|LIM and SH3 protein 1	NM_010688|Lasp1|16796|LIM and SH3 protein 1	AK154656|Lasp1|16796|LIM and SH3 protein 1	BC010840|Lasp1|16796|LIM and SH3 protein 1	X96973|Lasp1|16796|LIM and SH3 protein 1	CT010288|Lasp1|16796|LIM and SH3 protein 1
mm9_v1_chr1_-_59293936_59294089	0.572919	UCAAGUA	AK029858|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_001159948|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	BC046828|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	BC031479|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	AB053307|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_028717|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_146109|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)
mm9_v1_chr1_-_158869650_158869756	0.568771	UCAAGUA	BC043132|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	BC052663|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK169368|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK018622|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK029049|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK033549|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK161080|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK029993|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	AK036803|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_001159965|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_001159967|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_001159968|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_023884|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2
mm9_v1_chr10_+_51953390_51953445	0.56799	UCAAGUA	AK016485|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	NM_025705|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	AK157211|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1
mm9_v1_chr3_-_105604199_105604320	0.562768	UCAAGUA	AK152504|Rap1a|109905|RAS-related protein-1a	AK030897|Rap1a|109905|RAS-related protein-1a	BC051419|Rap1a|109905|RAS-related protein-1a	NM_145541|Rap1a|109905|RAS-related protein-1a
mm9_v1_chr2_+_153171730_153171874	0.553095	UCAAGUA	AK122413|Asxl1|228790|additional sex combs like 1 (Drosophila)	NM_001039939|Asxl1|228790|additional sex combs like 1 (Drosophila)
mm9_v1_chr4_-_120861138_120861138	0.542633	UCAAGUA	NM_001081013|Rlf|109263|rearranged L-myc fusion sequence
mm9_v1_chr3_+_145650833_145650943	0.539088	UCAAGUA	NM_001166064|Syde2|214804|synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
mm9_v1_chr19_+_27291507_27291624	0.527614	UCAAGUA	AK044683|Vldlr|22359|very low density lipoprotein receptor	AK076172|Vldlr|22359|very low density lipoprotein receptor	NM_001161420|Vldlr|22359|very low density lipoprotein receptor	NM_013703|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr1_-_157820378_157820386	0.526168	UCAAGUA	AK044664|Cep350|74081|centrosomal protein 350	NM_001039184|Cep350|74081|centrosomal protein 350
mm9_v1_chr2_-_7317824_7317824	0.525925	UCAAGUA	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr8_+_97125835_97125965	0.519769	UCAAGUA	NM_026274|Rspry1|67610|ring finger and SPRY domain containing 1	BC054121|Rspry1|67610|ring finger and SPRY domain containing 1	AK150941|Rspry1|67610|ring finger and SPRY domain containing 1	AK152435|Rspry1|67610|ring finger and SPRY domain containing 1	AK172461|Rspry1|67610|ring finger and SPRY domain containing 1	AK166167|Rspry1|67610|ring finger and SPRY domain containing 1	AK151018|Rspry1|67610|ring finger and SPRY domain containing 1	AK152024|Rspry1|67610|ring finger and SPRY domain containing 1	AK156697|Rspry1|67610|ring finger and SPRY domain containing 1	AK146028|Rspry1|67610|ring finger and SPRY domain containing 1	AK172567|Rspry1|67610|ring finger and SPRY domain containing 1	AK032416|Rspry1|67610|ring finger and SPRY domain containing 1	AK141443|Rspry1|67610|ring finger and SPRY domain containing 1
mm9_v1_chr19_+_40905768_40905801	0.517871	UCAAGUA	AK052506|Ccnj|240665|cyclin J	NM_172839|Ccnj|240665|cyclin J	AK157841|Ccnj|240665|cyclin J	BC120921|Ccnj|240665|cyclin J	BC120922|Ccnj|240665|cyclin J	BC117559|Ccnj|240665|cyclin J
mm9_v1_chr19_+_36629128_36629172	0.509384	UCAAGUA	AK142777|Hectd2|226098|HECT domain containing 2	NM_001163471|Hectd2|226098|HECT domain containing 2	NM_172637|Hectd2|226098|HECT domain containing 2	BC137671|Hectd2|226098|HECT domain containing 2	BC144815|Hectd2|226098|HECT domain containing 2	AK041629|Hectd2|226098|HECT domain containing 2	AK043646|Hectd2|226098|HECT domain containing 2	AK079321|Hectd2|226098|HECT domain containing 2
mm9_v1_chr5_+_65928483_65928591	0.501396	UCAAGUA	AK139564|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	NM_016786|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK048194|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK035371|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK018366|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK160728|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK031055|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK036068|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK162142|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AB011081|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	BC085311|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK166647|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)
mm9_v1_chr1_-_184271729_184271762	0.499982	UCAAGUA	BC094542|Fbxo28|67948|F-box protein 28	NM_175127|Fbxo28|67948|F-box protein 28	AK076211|Fbxo28|67948|F-box protein 28	AK077653|Fbxo28|67948|F-box protein 28
mm9_v1_chr16_-_46010510_46010548	0.494848	UCAAGUA	NM_001134480|Plcxd2|433022|phosphatidylinositol-specific phospholipase C, X domain containing 2
mm9_v1_chr1_-_97564139_97564174	0.493646	UCAAGUA	BC060112|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	AJ223956|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_001159745|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_009183|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	X86000|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm9_v1_chr6_-_13557981_13558062	0.485641	UCAAGUA	BC024911|Tmem168|101118|transmembrane protein 168	BC007160|Tmem168|101118|transmembrane protein 168	AK054353|Tmem168|101118|transmembrane protein 168	AK152957|Tmem168|101118|transmembrane protein 168	AK034589|Tmem168|101118|transmembrane protein 168	AK170302|Tmem168|101118|transmembrane protein 168	AK018471|Tmem168|101118|transmembrane protein 168	AK051532|Tmem168|101118|transmembrane protein 168	NM_028990|Tmem168|101118|transmembrane protein 168
mm9_v1_chr10_-_7675872_7675977	0.482211	UCAAGUA	AK089164|Tab2|68652|TGF-beta activated kinase 1/MAP3K7 binding protein 2	NM_138667|Tab2|68652|TGF-beta activated kinase 1/MAP3K7 binding protein 2
mm9_v1_chr14_+_64055230_64055357	0.4777	UCAAGUA	NM_177628|Fam167a|219148|family with sequence similarity 167, member A	BC065085|Fam167a|219148|family with sequence similarity 167, member A	BC094561|Fam167a|219148|family with sequence similarity 167, member A
mm9_v1_chr14_-_37748753_37748753	0.477381	UCAAGUA	AK005931|Gcap14|72972|granule cell antiserum positive 14	BC048641|Gcap14|72972|granule cell antiserum positive 14	BC060947|Gcap14|72972|granule cell antiserum positive 14	NM_028407|Gcap14|72972|granule cell antiserum positive 14
mm9_v1_chr9_+_113840051_113840064	0.466374	UCAAGUA	AK143282|Ubp1|22221|upstream binding protein 1	NM_001083319|Ubp1|22221|upstream binding protein 1	NM_013699|Ubp1|22221|upstream binding protein 1
mm9_v1_chr14_-_46008425_46008617	0.464558	UCAAGUA	BC092047|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	BC031116|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK018499|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK050266|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AJ001006|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	NM_019425|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007722|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK167870|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK168074|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007647|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK008566|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK002466|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK028693|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007764|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK011098|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1
mm9_v1_chr18_+_61085283_61085301	0.463529	UCAAGUA	AK083245|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK163179|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	NM_177407|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK122410|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	X14836|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr11_-_11927973_11927973	0.462636	UCAAGUA	BC016111|Grb10|14783|growth factor receptor bound protein 10	NM_001177629|Grb10|14783|growth factor receptor bound protein 10
mm9_v1_chr15_-_10400242_10400361	0.462252	UCAAGUA	AK140224|Dnajc21|78244|DnaJ (Hsp40) homolog, subfamily C, member 21	NM_030046|Dnajc21|78244|DnaJ (Hsp40) homolog, subfamily C, member 21
mm9_v1_chr7_+_104520120_104520143	0.450509	UCAAGUA	AK166897|Alg8|381903|asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)	NM_199035|Alg8|381903|asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)	AK141341|Alg8|381903|asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)	AK166755|Alg8|381903|asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)	BC061244|Alg8|381903|asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)
mm9_v1_chr14_+_33647147_33647147	0.448921	UCAAGUA	NM_001164485|Fam170b|105511|family with sequence similarity 170, member B
mm9_v1_chr2_+_29934214_29934285	0.447583	UCAAGUA	AK142988|Pkn3|263803|protein kinase N3	AK142182|Pkn3|263803|protein kinase N3	BC034126|Pkn3|263803|protein kinase N3	NM_153805|Pkn3|263803|protein kinase N3
mm9_v1_chr14_-_21365595_21365800	0.437298	UCAAGUA	BC037668|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	AK135203|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	M81483|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	AB221678|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	BC066000|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	NM_008914|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform
mm9_v1_chr10_+_18127443_18127504	0.420878	UCAAGUA	AK041760|Nhsl1|215819|NHS-like 1	AK017530|Nhsl1|215819|NHS-like 1	NM_173390|Nhsl1|215819|NHS-like 1	AK038892|Nhsl1|215819|NHS-like 1
mm9_v1_chr6_+_72297294_72297363	0.418897	UCAAGUA	AK085662|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	NM_026696|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC064080|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	AK013079|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC066053|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC117811|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC117812|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	AK002701|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene
mm9_v1_chr11_+_79806552_79806633	0.414835	UCAAGUA	AK141264|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	BC064461|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	NM_001163018|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	NM_199196|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)
mm9_v1_chr5_+_106305563_106305620	0.409644	UCAAGUA	AK017693|Zfp326|54367|zinc finger protein 326	AK032801|Zfp326|54367|zinc finger protein 326	BC039041|Zfp326|54367|zinc finger protein 326	NM_018759|Zfp326|54367|zinc finger protein 326	BC005567|Zfp326|54367|zinc finger protein 326	BC037055|Zfp326|54367|zinc finger protein 326	AK146438|Zfp326|54367|zinc finger protein 326	AB012725|Zfp326|54367|zinc finger protein 326
mm9_v1_chr6_+_14851348_14851478	0.407961	UCAAGUA	NM_053242|Foxp2|114142|forkhead box P2	AK051668|Foxp2|114142|forkhead box P2	AK085080|Foxp2|114142|forkhead box P2	AK080549|Foxp2|114142|forkhead box P2
mm9_v1_chr1_+_133807034_133807132	0.405974	UCAAGUA	NM_001145804|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	NM_175294|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	AB049825|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	AK078816|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	BC039951|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm9_v1_chrX_+_68468175_68468259	0.400964	UCAAGUA	AK149997|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164191|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164192|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164193|Mtm1|17772|X-linked myotubular myopathy gene 1	AK171475|Mtm1|17772|X-linked myotubular myopathy gene 1	AK031794|Mtm1|17772|X-linked myotubular myopathy gene 1	AK166452|Mtm1|17772|X-linked myotubular myopathy gene 1	BC090984|Mtm1|17772|X-linked myotubular myopathy gene 1	BC051022|Mtm1|17772|X-linked myotubular myopathy gene 1	AK032870|Mtm1|17772|X-linked myotubular myopathy gene 1	BC066847|Mtm1|17772|X-linked myotubular myopathy gene 1	AF073996|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_019926|Mtm1|17772|X-linked myotubular myopathy gene 1	AK166759|Mtm1|17772|X-linked myotubular myopathy gene 1
mm9_v1_chr17_-_46919586_46919619	0.394735	UCAAGUA	BC030165|Rpl7l1|66229|ribosomal protein L7-like 1	AK007884|Rpl7l1|66229|ribosomal protein L7-like 1	AK005264|Rpl7l1|66229|ribosomal protein L7-like 1	AK008672|Rpl7l1|66229|ribosomal protein L7-like 1	AK090038|Rpl7l1|66229|ribosomal protein L7-like 1	AK090082|Rpl7l1|66229|ribosomal protein L7-like 1	AK167036|Rpl7l1|66229|ribosomal protein L7-like 1	NM_025433|Rpl7l1|66229|ribosomal protein L7-like 1	AK166499|Rpl7l1|66229|ribosomal protein L7-like 1
mm9_v1_chr8_-_112261607_112261664	0.391546	UCAAGUA	AK089170|Atxn1l|52335|ataxin 1-like	NM_001080930|Atxn1l|52335|ataxin 1-like	AK172521|Atxn1l|52335|ataxin 1-like
mm9_v1_chr19_-_28057437_28057437	0.383659	UCAAGUA	NM_001166414|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr12_-_66174913_66174972	0.381351	UCAAGUA	AF110812|Fkbp3|30795|FK506 binding protein 3	AK012346|Fkbp3|30795|FK506 binding protein 3	NM_013902|Fkbp3|30795|FK506 binding protein 3	AF135595|Fkbp3|30795|FK506 binding protein 3	AK168641|Fkbp3|30795|FK506 binding protein 3	BC002122|Fkbp3|30795|FK506 binding protein 3	AK145648|Fkbp3|30795|FK506 binding protein 3	AK150802|Fkbp3|30795|FK506 binding protein 3
mm9_v1_chr14_-_35401845_35401867	0.376116	UCAAGUA	AK084461|Ldb3|24131|LIM domain binding 3	AK137181|Ldb3|24131|LIM domain binding 3	AJ005621|Ldb3|24131|LIM domain binding 3	NM_001039071|Ldb3|24131|LIM domain binding 3	NM_001039072|Ldb3|24131|LIM domain binding 3	NM_001039073|Ldb3|24131|LIM domain binding 3	NM_001039075|Ldb3|24131|LIM domain binding 3	NM_001039076|Ldb3|24131|LIM domain binding 3	NM_011918|Ldb3|24131|LIM domain binding 3	AK004020|Ldb3|24131|LIM domain binding 3
mm9_v1_chr5_-_124804583_124804698	0.371901	UCAAGUA	BC083075|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1	NM_013812|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1	AK004852|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm9_v1_chr3_-_75360676_75360744	0.369215	UCAAGUA	AF159368|Pdcd10|56426|programmed cell death 10	AK149182|Pdcd10|56426|programmed cell death 10	BC086778|Pdcd10|56426|programmed cell death 10	AK005594|Pdcd10|56426|programmed cell death 10	AK168857|Pdcd10|56426|programmed cell death 10	AK169689|Pdcd10|56426|programmed cell death 10	BC019650|Pdcd10|56426|programmed cell death 10	AK075926|Pdcd10|56426|programmed cell death 10	NM_019745|Pdcd10|56426|programmed cell death 10	AK160234|Pdcd10|56426|programmed cell death 10	AK137198|Pdcd10|56426|programmed cell death 10
mm9_v1_chr19_+_43764161_43764183	0.361217	UCAAGUA	AK170546|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7	NM_053103|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7
mm9_v1_chr17_-_75951137_75951285	0.357499	UCAAGUA	AK167224|Fam98a|72722|family with sequence similarity 98, member A	BC004626|Fam98a|72722|family with sequence similarity 98, member A	AK146955|Fam98a|72722|family with sequence similarity 98, member A	AK046481|Fam98a|72722|family with sequence similarity 98, member A	AK012997|Fam98a|72722|family with sequence similarity 98, member A	AK146215|Fam98a|72722|family with sequence similarity 98, member A	AK146761|Fam98a|72722|family with sequence similarity 98, member A	NM_133747|Fam98a|72722|family with sequence similarity 98, member A
mm9_v1_chr8_+_109394141_109394246	0.353004	UCAAGUA	NM_008217|Has3|15118|hyaluronan synthase 3	U86408|Has3|15118|hyaluronan synthase 3	BC138152|Has3|15118|hyaluronan synthase 3	BC138161|Has3|15118|hyaluronan synthase 3
mm9_v1_chr8_+_63111621_63111675	0.345972	UCAAGUA	AK089654|Mfap3l|71306|microfibrillar-associated protein 3-like	NM_027756|Mfap3l|71306|microfibrillar-associated protein 3-like	BC095950|Mfap3l|71306|microfibrillar-associated protein 3-like
mm9_v1_chr2_-_25877230_25877291	0.340762	UCAAGUA	BC021811|Ubac1|98766|ubiquitin associated domain containing 1	NM_133835|Ubac1|98766|ubiquitin associated domain containing 1
mm9_v1_chr12_-_82881995_82882183	0.337337	UCAAGUA	AK053843|Map3k9|338372|mitogen-activated protein kinase kinase kinase 9	AK155677|Map3k9|338372|mitogen-activated protein kinase kinase kinase 9	NM_001174107|Map3k9|338372|mitogen-activated protein kinase kinase kinase 9	NM_177395|Map3k9|338372|mitogen-activated protein kinase kinase kinase 9
mm9_v1_chr5_+_134575561_134575653	0.330118	UCAAGUA	AJ296173|Gatsl2|80909|GATS protein-like 2	AK039122|Gatsl2|80909|GATS protein-like 2	BC094613|Gatsl2|80909|GATS protein-like 2	NM_030719|Gatsl2|80909|GATS protein-like 2	AK052217|Gatsl2|80909|GATS protein-like 2
mm9_v1_chr3_-_103594950_103595238	0.327127	UCAAGUA	BC145697|Hipk1|15257|homeodomain interacting protein kinase 1	BC145699|Hipk1|15257|homeodomain interacting protein kinase 1	AF170303|Hipk1|15257|homeodomain interacting protein kinase 1	AF170304|Hipk1|15257|homeodomain interacting protein kinase 1	AF077658|Hipk1|15257|homeodomain interacting protein kinase 1	AK134408|Hipk1|15257|homeodomain interacting protein kinase 1	NM_010432|Hipk1|15257|homeodomain interacting protein kinase 1
mm9_v1_chr1_-_52557130_52557348	0.326321	UCAAGUA	U47008|Nab1|17936|Ngfi-A binding protein 1	BC016886|Nab1|17936|Ngfi-A binding protein 1	BC005627|Nab1|17936|Ngfi-A binding protein 1	NM_008667|Nab1|17936|Ngfi-A binding protein 1
mm9_v1_chrX_+_12858142_12858215	0.31902	UCAAGUA	AK140990|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	NM_010028|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	Z38117|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	AK163250|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	BC150862|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	BC172016|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	L25126|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
mm9_v1_chr2_+_156688814_156688934	0.315908	UCAAGUA	NM_026124|1110008F13Rik|67388|RIKEN cDNA 1110008F13 gene	AK003568|1110008F13Rik|67388|RIKEN cDNA 1110008F13 gene	AK078178|1110008F13Rik|67388|RIKEN cDNA 1110008F13 gene	AK031002|1110008F13Rik|67388|RIKEN cDNA 1110008F13 gene	AK002452|1110008F13Rik|67388|RIKEN cDNA 1110008F13 gene	AK155559|1110008F13Rik|67388|RIKEN cDNA 1110008F13 gene	BC019445|1110008F13Rik|67388|RIKEN cDNA 1110008F13 gene
mm9_v1_chr8_-_122625167_122625371	0.309015	UCAAGUA	AK170923|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK172462|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK089681|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK090333|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK170639|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK157968|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK041905|Zdhhc7|102193|zinc finger, DHHC domain containing 7	BC075666|Zdhhc7|102193|zinc finger, DHHC domain containing 7	NM_133967|Zdhhc7|102193|zinc finger, DHHC domain containing 7
mm9_v1_chr11_-_45979836_45979862	0.307836	UCAAGUA	AK035736|Nipal4|214112|NIPA-like domain containing 4	BC139819|Nipal4|214112|NIPA-like domain containing 4	AK035561|Nipal4|214112|NIPA-like domain containing 4	NM_172524|Nipal4|214112|NIPA-like domain containing 4
mm9_v1_chr5_-_87061409_87061448	0.306248	UCAAGUA	AK029032|Tmprss11f|243083|transmembrane protease, serine 11f	AK028587|Tmprss11f|243083|transmembrane protease, serine 11f	AK028447|Tmprss11f|243083|transmembrane protease, serine 11f	AK036957|Tmprss11f|243083|transmembrane protease, serine 11f	NM_178730|Tmprss11f|243083|transmembrane protease, serine 11f
mm9_v1_chr1_-_90598670_90598781	0.305426	UCAAGUA	AK080335|Arl4c|320982|ADP-ribosylation factor-like 4C	AK080380|Arl4c|320982|ADP-ribosylation factor-like 4C	AK080743|Arl4c|320982|ADP-ribosylation factor-like 4C	BC055769|Arl4c|320982|ADP-ribosylation factor-like 4C	NM_177305|Arl4c|320982|ADP-ribosylation factor-like 4C
mm9_v1_chr10_-_121484248_121484370	0.30442	UCAAGUA	NM_001081037|Srgap1|117600|SLIT-ROBO Rho GTPase activating protein 1	BC120892|Srgap1|117600|SLIT-ROBO Rho GTPase activating protein 1	BC120893|Srgap1|117600|SLIT-ROBO Rho GTPase activating protein 1	AK138257|Srgap1|117600|SLIT-ROBO Rho GTPase activating protein 1
mm9_v1_chr3_-_49561168_49561243	0.303397	UCAAGUA	AF416735|Pcdh18|73173|protocadherin 18	AK173204|Pcdh18|73173|protocadherin 18	BC052198|Pcdh18|73173|protocadherin 18	AK036560|Pcdh18|73173|protocadherin 18	AK032820|Pcdh18|73173|protocadherin 18	NM_130448|Pcdh18|73173|protocadherin 18
mm9_v1_chrX_-_106029678_106029693	0.30301	UCAAGUA	AK050539|Brwd3|382236|bromodomain and WD repeat domain containing 3	AK163354|Brwd3|382236|bromodomain and WD repeat domain containing 3	NM_001081477|Brwd3|382236|bromodomain and WD repeat domain containing 3
mm9_v1_chr4_-_82666973_82667005	0.286798	UCAAGUA	BC138427|Frem1|329872|Fras1 related extracellular matrix protein 1	BC145274|Frem1|329872|Fras1 related extracellular matrix protein 1	AJ616838|Frem1|329872|Fras1 related extracellular matrix protein 1	NM_177863|Frem1|329872|Fras1 related extracellular matrix protein 1
mm9_v1_chr1_-_10222750_10222750	0.283386	UCAAGUA	NM_001102430|Arfgef1|211673|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
mm9_v1_chr8_-_88079169_88079179	0.282516	UCAAGUA	NM_019794|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2
mm9_v1_chr6_+_97941776_97941914	0.281923	UCAAGUA	NM_008601|Mitf|17342|microphthalmia-associated transcription factor	U19875|Mitf|17342|microphthalmia-associated transcription factor	Z23066|Mitf|17342|microphthalmia-associated transcription factor	BC108976|Mitf|17342|microphthalmia-associated transcription factor	BC108977|Mitf|17342|microphthalmia-associated transcription factor	AB221657|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr13_+_12658130_12658343	0.281442	UCAAGUA	AK160664|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC058721|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	NM_026184|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	AK004981|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	AK041951|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC111900|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC112426|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC145888|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC145890|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	AF489856|Ero1lb|67475|ERO1-like beta (S. cerevisiae)
mm9_v1_chr10_+_70810540_70810588	0.281401	UCAAGUA	BC052463|Ipmk|69718|inositol polyphosphate multikinase	NM_027184|Ipmk|69718|inositol polyphosphate multikinase	AK036978|Ipmk|69718|inositol polyphosphate multikinase	AK010523|Ipmk|69718|inositol polyphosphate multikinase	AK172246|Ipmk|69718|inositol polyphosphate multikinase	AK171355|Ipmk|69718|inositol polyphosphate multikinase
mm9_v1_chr15_-_38230397_38230491	0.279972	UCAAGUA	BC003316|Klf10|21847|Kruppel-like factor 10	Z36270|Klf10|21847|Kruppel-like factor 10	AK154719|Klf10|21847|Kruppel-like factor 10	AF064088|Klf10|21847|Kruppel-like factor 10	AK043433|Klf10|21847|Kruppel-like factor 10	AK079679|Klf10|21847|Kruppel-like factor 10	AF049879|Klf10|21847|Kruppel-like factor 10	NM_013692|Klf10|21847|Kruppel-like factor 10	AK004906|Klf10|21847|Kruppel-like factor 10
mm9_v1_chr9_-_70351520_70351611	0.279493	UCAAGUA	AK171932|Rnf111|93836|ring finger 111	AF330197|Rnf111|93836|ring finger 111	NM_033604|Rnf111|93836|ring finger 111
mm9_v1_chr15_+_59205752_59205871	0.278692	UCAAGUA	NM_001164604|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	NM_026746|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK003685|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK051277|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	BC009125|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK188685|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK211545|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK212165|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)
mm9_v1_chr11_-_70832737_70832807	0.275001	UCAAGUA	AF208064|Derl2|116891|Der1-like domain family, member 2	AK083632|Derl2|116891|Der1-like domain family, member 2	BC005682|Derl2|116891|Der1-like domain family, member 2	AK083725|Derl2|116891|Der1-like domain family, member 2	AK048627|Derl2|116891|Der1-like domain family, member 2	AK077659|Derl2|116891|Der1-like domain family, member 2	AK082564|Derl2|116891|Der1-like domain family, member 2	NM_033562|Derl2|116891|Der1-like domain family, member 2	AK090105|Derl2|116891|Der1-like domain family, member 2
mm9_v1_chr18_-_66162268_66162297	0.271925	UCAAGUA	AK170799|Lman1|70361|lectin, mannose-binding, 1	AK011495|Lman1|70361|lectin, mannose-binding, 1	AK151599|Lman1|70361|lectin, mannose-binding, 1	AK151949|Lman1|70361|lectin, mannose-binding, 1	AK153554|Lman1|70361|lectin, mannose-binding, 1	NM_001172062|Lman1|70361|lectin, mannose-binding, 1	NM_027400|Lman1|70361|lectin, mannose-binding, 1
mm9_v1_chr4_-_58566362_58566472	0.270563	UCAAGUA	NM_010336|Lpar1|14745|lysophosphatidic acid receptor 1	U70622|Lpar1|14745|lysophosphatidic acid receptor 1
mm9_v1_chr6_+_21899614_21899692	0.270285	UCAAGUA	NM_023626|Ing3|71777|inhibitor of growth family, member 3	AY007791|Ing3|71777|inhibitor of growth family, member 3	AK080787|Ing3|71777|inhibitor of growth family, member 3	AK131993|Ing3|71777|inhibitor of growth family, member 3	BC018342|Ing3|71777|inhibitor of growth family, member 3
mm9_v1_chr16_+_84774367_84774536	0.269436	UCAAGUA	BC028778|Jam2|67374|junction adhesion molecule 2	NM_023844|Jam2|67374|junction adhesion molecule 2	AJ291757|Jam2|67374|junction adhesion molecule 2	AK010826|Jam2|67374|junction adhesion molecule 2	AK013914|Jam2|67374|junction adhesion molecule 2	AK010616|Jam2|67374|junction adhesion molecule 2
mm9_v1_chr5_+_91456489_91456542	0.268356	UCAAGUA	BC119291|Epgn|71920|epithelial mitogen	BC119293|Epgn|71920|epithelial mitogen	BC145041|Epgn|71920|epithelial mitogen	AJ291391|Epgn|71920|epithelial mitogen	NM_053087|Epgn|71920|epithelial mitogen
mm9_v1_chr1_+_166179176_166179227	0.267963	UCAAGUA	AK044825|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	AF179403|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	AF418986|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	NM_054087|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	AF360396|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	BC034659|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2	AF216204|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2
mm9_v1_chr2_-_84316891_84316933	0.264322	UCAAGUA	BC036146|Tfpi|21788|tissue factor pathway inhibitor	NM_001177319|Tfpi|21788|tissue factor pathway inhibitor	AK034752|Tfpi|21788|tissue factor pathway inhibitor	NM_001177320|Tfpi|21788|tissue factor pathway inhibitor
mm9_v1_chr14_+_55050437_55050513	0.25922	UCAAGUA	AK155117|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK088476|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK165014|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	NM_008608|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK163601|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	BC076638|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	U54984|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK149907|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK040968|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK138611|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK134340|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK149636|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)
mm9_v1_chr13_-_101322416_101322452	0.253134	UCAAGUA	BC138679|Ocln|18260|occludin	BC138680|Ocln|18260|occludin	BC145371|Ocln|18260|occludin	AK042576|Ocln|18260|occludin	NM_008756|Ocln|18260|occludin
mm9_v1_chr12_+_37040755_37040991	0.251097	UCAAGUA	NM_025312|Sostdc1|66042|sclerostin domain containing 1	AK002240|Sostdc1|66042|sclerostin domain containing 1	AK002396|Sostdc1|66042|sclerostin domain containing 1	AK007893|Sostdc1|66042|sclerostin domain containing 1	AK007967|Sostdc1|66042|sclerostin domain containing 1	AY255635|Sostdc1|66042|sclerostin domain containing 1	AY134666|Sostdc1|66042|sclerostin domain containing 1	BC021458|Sostdc1|66042|sclerostin domain containing 1	AB059271|Sostdc1|66042|sclerostin domain containing 1	AK007935|Sostdc1|66042|sclerostin domain containing 1
mm9_v1_chr2_-_37502738_37502804	0.250795	UCAAGUA	X84692|Strbp|20744|spermatid perinuclear RNA binding protein	NM_009261|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr3_-_146475652_146475990	0.249914	UCAAGUA	AK193506|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK204631|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK216103|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	J02626|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	BC054533|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK048319|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	NM_011100|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK031441|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr1_+_189821727_189821874	0.235541	UCAAGUA	BC082324|Esrrg|26381|estrogen-related receptor gamma	NM_011935|Esrrg|26381|estrogen-related receptor gamma	AB093266|Esrrg|26381|estrogen-related receptor gamma	AF117254|Esrrg|26381|estrogen-related receptor gamma	AB221580|Esrrg|26381|estrogen-related receptor gamma
mm9_v1_chr7_+_36371265_36371319	0.231063	UCAAGUA	NM_145633|Ankrd27|245886|ankyrin repeat domain 27 (VPS9 domain)	NM_178263|Ankrd27|245886|ankyrin repeat domain 27 (VPS9 domain)	AK085796|Ankrd27|245886|ankyrin repeat domain 27 (VPS9 domain)	BC016493|Ankrd27|245886|ankyrin repeat domain 27 (VPS9 domain)	AK052177|Ankrd27|245886|ankyrin repeat domain 27 (VPS9 domain)	AY336500|Ankrd27|245886|ankyrin repeat domain 27 (VPS9 domain)	AK144733|Ankrd27|245886|ankyrin repeat domain 27 (VPS9 domain)	BC065093|Ankrd27|245886|ankyrin repeat domain 27 (VPS9 domain)	AK153853|Ankrd27|245886|ankyrin repeat domain 27 (VPS9 domain)
mm9_v1_chr19_-_53465036_53465068	0.227274	UCAAGUA	AK168575|Smndc1|76479|survival motor neuron domain containing 1	BC058779|Smndc1|76479|survival motor neuron domain containing 1	AK010395|Smndc1|76479|survival motor neuron domain containing 1	AK078834|Smndc1|76479|survival motor neuron domain containing 1	AK090047|Smndc1|76479|survival motor neuron domain containing 1	NM_172429|Smndc1|76479|survival motor neuron domain containing 1
mm9_v1_chr6_+_97879810_97879849	0.216546	UCAAGUA	NM_001178049|Mitf|17342|microphthalmia-associated transcription factor	AK052895|Mitf|17342|microphthalmia-associated transcription factor	U19874|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr6_-_30193802_30193802	0.214806	UCAAGUA	NM_001169577|Ube2h|22214|ubiquitin-conjugating enzyme E2H
mm9_v1_chr5_+_147043131_147043250	0.214598	UCAAGUA	NM_153599|Cdk8|264064|cyclin-dependent kinase 8
mm9_v1_chrX_-_57657081_57657155	0.212954	UCAAGUA	AK143860|Atp11c|320940|ATPase, class VI, type 11C	BC106087|Atp11c|320940|ATPase, class VI, type 11C	AK079479|Atp11c|320940|ATPase, class VI, type 11C	AK043065|Atp11c|320940|ATPase, class VI, type 11C	AK039243|Atp11c|320940|ATPase, class VI, type 11C	NM_001001798|Atp11c|320940|ATPase, class VI, type 11C	NM_001037863|Atp11c|320940|ATPase, class VI, type 11C
mm9_v1_chr7_+_138554108_138554177	0.210849	UCAAGUA	NM_025826|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain	AK131628|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain	BC054428|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain
mm9_v1_chr2_-_63936044_63936094	0.208498	UCAAGUA	AF263913|Fign|60344|fidgetin	AK163474|Fign|60344|fidgetin	AK164536|Fign|60344|fidgetin	NM_021716|Fign|60344|fidgetin	AK143787|Fign|60344|fidgetin	BC059266|Fign|60344|fidgetin
mm9_v1_chr11_-_30098163_30098286	0.202475	UCAAGUA	AF017112|Spnb2|20742|spectrin beta 2	AF016040|Spnb2|20742|spectrin beta 2	AK079842|Spnb2|20742|spectrin beta 2	AK157727|Spnb2|20742|spectrin beta 2	AK169544|Spnb2|20742|spectrin beta 2	NM_009260|Spnb2|20742|spectrin beta 2
mm9_v1_chrX_+_63906333_63906333	0.198807	UCAAGUA	BC111888|Slitrk2|245450|SLIT and NTRK-like family, member 2	BC112406|Slitrk2|245450|SLIT and NTRK-like family, member 2	NM_198863|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr13_+_14156038_14156092	0.196922	UCAAGUA	AK136105|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	AK041414|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	NM_194262|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	NM_198122|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	AK161669|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	AK031062|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)
mm9_v1_chr9_-_101101334_101101402	0.196261	UCAAGUA	AK169510|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha	AK132175|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha	NM_172144|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha
mm9_v1_chr16_+_13671936_13672057	0.193423	UCAAGUA	NM_001177552|Bfar|67118|bifunctional apoptosis regulator	NM_025976|Bfar|67118|bifunctional apoptosis regulator	AK013950|3110001I22Rik|66598|RIKEN cDNA 3110001I22 gene	AK041839|Bfar|67118|bifunctional apoptosis regulator
mm9_v1_chr2_+_118639738_118639738	0.190282	UCAAGUA	AK006328|D2Ertd750e|51944|DNA segment, Chr 2, ERATO Doi 750, expressed	NM_026412|D2Ertd750e|51944|DNA segment, Chr 2, ERATO Doi 750, expressed
mm9_v1_chr7_-_123586952_123586976	0.188108	UCAAGUA	AK163446|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	AK049609|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	U52193|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	AK019194|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	AK140908|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	NM_011083|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide
mm9_v1_chr7_-_26324847_26325022	0.184781	UCAAGUA	AB500065|Ceacam2|26367|carcinoembryonic antigen-related cell adhesion molecule 2	AF101164|Ceacam2|26367|carcinoembryonic antigen-related cell adhesion molecule 2	X76085|Ceacam2|26367|carcinoembryonic antigen-related cell adhesion molecule 2	NM_001113368|Ceacam2|26367|carcinoembryonic antigen-related cell adhesion molecule 2	NM_001113369|Ceacam2|26367|carcinoembryonic antigen-related cell adhesion molecule 2	NM_007543|Ceacam2|26367|carcinoembryonic antigen-related cell adhesion molecule 2
mm9_v1_chr6_-_28211600_28211600	0.182037	UCAAGUA	BC119236|Zfp800|627049|zinc finger protein 800	BC119262|Zfp800|627049|zinc finger protein 800	BC144761|Zfp800|627049|zinc finger protein 800	NM_001081678|Zfp800|627049|zinc finger protein 800
mm9_v1_chr11_-_98054219_98054219	0.180062	UCAAGUA	AF000294|Med1|19014|mediator complex subunit 1	NM_013634|Med1|19014|mediator complex subunit 1
mm9_v1_chr17_-_63849928_63849928	0.179767	UCAAGUA	NM_015794|Fbxl17|50758|F-box and leucine-rich repeat protein 17
mm9_v1_chr13_-_24372584_24372663	0.175186	UCAAGUA	BC150819|Lrrc16a|68732|leucine rich repeat containing 16A	AK051570|Lrrc16a|68732|leucine rich repeat containing 16A	NM_026825|Lrrc16a|68732|leucine rich repeat containing 16A	AY437876|Lrrc16a|68732|leucine rich repeat containing 16A
mm9_v1_chr1_+_74634915_74634982	0.172625	UCAAGUA	AK078925|Bcs1l|66821|BCS1-like (yeast)	AK079385|Bcs1l|66821|BCS1-like (yeast)	NM_025784|Bcs1l|66821|BCS1-like (yeast)	AK012324|Bcs1l|66821|BCS1-like (yeast)	BC019781|Bcs1l|66821|BCS1-like (yeast)
mm9_v1_chr14_+_31292750_31292775	0.171818	UCAAGUA	AJ344447|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)	NM_133761|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)
mm9_v1_chr4_+_115500670_115500814	0.171718	UCAAGUA	AK084014|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	AK148476|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	NM_175308|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC099740|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC137587|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC137589|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)
mm9_v1_chr4_+_54960816_54960816	0.167678	UCAAGUA	NM_172867|Zfp462|242466|zinc finger protein 462
mm9_v1_chrX_-_57400778_57400876	0.164203	UCAAGUA	BC125435|Mcf2|109904|mcf.2 transforming sequence	AB052945|Mcf2|109904|mcf.2 transforming sequence	AB101616|Mcf2|109904|mcf.2 transforming sequence	NM_133197|Mcf2|109904|mcf.2 transforming sequence	AK032122|Mcf2|109904|mcf.2 transforming sequence
mm9_v1_chr19_-_8893759_8893788	0.162326	UCAAGUA	BC043061|Ttc9c|70387|tetratricopeptide repeat domain 9C	BC058967|Ttc9c|70387|tetratricopeptide repeat domain 9C	AK008753|Ttc9c|70387|tetratricopeptide repeat domain 9C	AK169288|Ttc9c|70387|tetratricopeptide repeat domain 9C	AK169296|Ttc9c|70387|tetratricopeptide repeat domain 9C	NM_027412|Ttc9c|70387|tetratricopeptide repeat domain 9C
mm9_v1_chr4_-_58566053_58566195	0.157236	UCAAGUA	BC025425|Lpar1|14745|lysophosphatidic acid receptor 1	AK030330|Lpar1|14745|lysophosphatidic acid receptor 1	NM_172989|Lpar1|14745|lysophosphatidic acid receptor 1
mm9_v1_chr6_+_54545104_54545338	0.156161	UCAAGUA	AK078040|Plekha8|231999|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	NM_001164361|Plekha8|231999|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	AK170592|Plekha8|231999|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
mm9_v1_chr8_-_126418628_126418659	0.147675	UCAAGUA	M12866|Acta1|11459|actin, alpha 1, skeletal muscle	BC014877|Acta1|11459|actin, alpha 1, skeletal muscle	NM_009606|Acta1|11459|actin, alpha 1, skeletal muscle	AK027919|Acta1|11459|actin, alpha 1, skeletal muscle
mm9_v1_chr14_+_31528800_31528932	0.147384	UCAAGUA	AK154826|Sfmbt1|54650|Scm-like with four mbt domains 1	NM_001166532|Sfmbt1|54650|Scm-like with four mbt domains 1	BC036972|Sfmbt1|54650|Scm-like with four mbt domains 1	AK142330|Sfmbt1|54650|Scm-like with four mbt domains 1	BC018217|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr10_-_119913990_119913990	0.141822	UCAAGUA	NM_010441|Hmga2|15364|high mobility group AT-hook 2
mm9_v1_chr10_-_80134720_80134753	0.141033	UCAAGUA	BC010256|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	NM_021462|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	Y11092|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2
mm9_v1_chr12_+_70473032_70473193	0.140667	UCAAGUA	BC083112|Arf6|11845|ADP-ribosylation factor 6	NM_007481|Arf6|11845|ADP-ribosylation factor 6	AK156960|Arf6|11845|ADP-ribosylation factor 6	BC003478|Arf6|11845|ADP-ribosylation factor 6	D87903|Arf6|11845|ADP-ribosylation factor 6
mm9_v1_chr9_+_65283563_65283648	0.139625	UCAAGUA	AK009430|Mtfmt|69606|mitochondrial methionyl-tRNA formyltransferase	NM_027134|Mtfmt|69606|mitochondrial methionyl-tRNA formyltransferase	AK133492|Mtfmt|69606|mitochondrial methionyl-tRNA formyltransferase	BC019509|Mtfmt|69606|mitochondrial methionyl-tRNA formyltransferase
mm9_v1_chrX_+_12648604_12648673	0.138689	UCAAGUA	AK049283|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	NM_009481|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	AK028443|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	DQ086491|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	U67874|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome
mm9_v1_chr4_-_82698070_82698070	0.1371	UCAAGUA	AB160986|Frem1|329872|Fras1 related extracellular matrix protein 1	NM_001198811|Frem1|329872|Fras1 related extracellular matrix protein 1
mm9_v1_chr1_+_106665395_106665416	0.134105	UCAAGUA	AK034475|Cdh20|23836|cadherin 20	NM_011800|Cdh20|23836|cadherin 20	BC119606|Cdh20|23836|cadherin 20	BC119607|Cdh20|23836|cadherin 20
mm9_v1_chr8_-_72662994_72663095	0.132196	UCAAGUA	AF123704|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	L43164|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	AF094761|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	AK146148|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	AK087462|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	AK052298|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	NM_001025589|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	NM_011266|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein
mm9_v1_chr5_+_16059312_16059745	0.131113	UCAAGUA	AK052289|Hgf|15234|hepatocyte growth factor	AK042121|Hgf|15234|hepatocyte growth factor	NM_010427|Hgf|15234|hepatocyte growth factor	AK142159|Hgf|15234|hepatocyte growth factor	BC119228|Hgf|15234|hepatocyte growth factor	BC144764|Hgf|15234|hepatocyte growth factor	AK082461|Hgf|15234|hepatocyte growth factor	X72307|Hgf|15234|hepatocyte growth factor	X84046|Hgf|15234|hepatocyte growth factor	AF042856|Hgf|15234|hepatocyte growth factor	D10212|Hgf|15234|hepatocyte growth factor	D10213|Hgf|15234|hepatocyte growth factor	S71816|Hgf|15234|hepatocyte growth factor
mm9_v1_chr7_-_133839152_133839297	0.130721	UCAAGUA	AK014753|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	BC145468|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	BC145688|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK053901|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	BC055909|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK010828|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK049139|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	NM_029420|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK010748|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)
mm9_v1_chr3_+_40439675_40439741	0.129205	UCAAGUA	NM_175515|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	AK035092|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	BC125523|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	BC132387|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)
mm9_v1_chr1_-_16609325_16609423	0.122883	UCAAGUA	AK077997|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	BC020124|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK082233|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	NM_025773|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK042870|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK044463|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK050679|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK015348|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK046086|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK050923|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)
mm9_v1_chr9_+_21069727_21069776	0.121188	UCAAGUA	AK154130|Atg4d|235040|autophagy-related 4D (yeast)	AK087258|Atg4d|235040|autophagy-related 4D (yeast)	AK036282|Atg4d|235040|autophagy-related 4D (yeast)	AK036571|Atg4d|235040|autophagy-related 4D (yeast)	AK081002|Atg4d|235040|autophagy-related 4D (yeast)	NM_153583|Atg4d|235040|autophagy-related 4D (yeast)	AK080353|Atg4d|235040|autophagy-related 4D (yeast)	AK044798|Atg4d|235040|autophagy-related 4D (yeast)	AK081605|Atg4d|235040|autophagy-related 4D (yeast)	BC030861|Atg4d|235040|autophagy-related 4D (yeast)	BC069851|Atg4d|235040|autophagy-related 4D (yeast)
mm9_v1_chr19_+_7568529_7568529	0.117445	UCAAGUA	NM_001163505|Atl3|109168|atlastin GTPase 3
mm9_v1_chr7_-_125728199_125728260	0.114995	UCAAGUA	AK083189|Tmc7|209760|transmembrane channel-like gene family 7	NM_172476|Tmc7|209760|transmembrane channel-like gene family 7	AK006547|Tmc7|209760|transmembrane channel-like gene family 7	AK082562|Tmc7|209760|transmembrane channel-like gene family 7	AK132820|Tmc7|209760|transmembrane channel-like gene family 7	AY263161|Tmc7|209760|transmembrane channel-like gene family 7	AY236499|Tmc7|209760|transmembrane channel-like gene family 7
mm9_v1_chr10_-_99949933_99949987	0.110912	UCAAGUA	AK044857|Tmtc3|237500|transmembrane and tetratricopeptide repeat containing 3	AK149759|Tmtc3|237500|transmembrane and tetratricopeptide repeat containing 3	AK158192|Tmtc3|237500|transmembrane and tetratricopeptide repeat containing 3	AK165838|Tmtc3|237500|transmembrane and tetratricopeptide repeat containing 3	NM_001033332|Tmtc3|237500|transmembrane and tetratricopeptide repeat containing 3	NM_001110013|Tmtc3|237500|transmembrane and tetratricopeptide repeat containing 3
mm9_v1_chr10_+_79389816_79389883	0.107797	UCAAGUA	AK154956|Arid3a|13496|AT rich interactive domain 3A (BRIGHT-like)	NM_007880|Arid3a|13496|AT rich interactive domain 3A (BRIGHT-like)	BC050925|Arid3a|13496|AT rich interactive domain 3A (BRIGHT-like)
mm9_v1_chr6_+_97757012_97757093	0.0910146	UCAAGUA	AK154189|Mitf|17342|microphthalmia-associated transcription factor	AK155350|Mitf|17342|microphthalmia-associated transcription factor	AK160757|Mitf|17342|microphthalmia-associated transcription factor	NM_001113198|Mitf|17342|microphthalmia-associated transcription factor	AB009397|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr8_-_36028698_36028768	0.0905588	UCAAGUA	BC057370|Tnks|21951|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	AK080913|Tnks|21951|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	NM_175091|Tnks|21951|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm9_v1_chr14_+_118536326_118536519	0.0870103	UCAAGUA	NM_021434|Gpr180|58245|G protein-coupled receptor 180	AK169908|Gpr180|58245|G protein-coupled receptor 180	AB041545|Gpr180|58245|G protein-coupled receptor 180	AK170316|Gpr180|58245|G protein-coupled receptor 180	BC055726|Gpr180|58245|G protein-coupled receptor 180	AK053422|Gpr180|58245|G protein-coupled receptor 180	BC069981|Gpr180|58245|G protein-coupled receptor 180	AK212055|Gpr180|58245|G protein-coupled receptor 180
mm9_v1_chr11_+_4167080_4167097	0.0808506	UCAAGUA	AK042018|Lif|16878|leukemia inhibitory factor	NM_001039537|Lif|16878|leukemia inhibitory factor
mm9_v1_chr18_-_80348164_80348258	0.0807096	UCAAGUA	AB093268|Adnp2|240442|ADNP homeobox 2	NM_175028|Adnp2|240442|ADNP homeobox 2
mm9_v1_chr9_-_110379093_110379197	0.0786185	UCAAGUA	BC065167|Klhl18|270201|kelch-like 18 (Drosophila)	BC025563|Klhl18|270201|kelch-like 18 (Drosophila)	AK173029|Klhl18|270201|kelch-like 18 (Drosophila)	NM_177771|Klhl18|270201|kelch-like 18 (Drosophila)
mm9_v1_chr19_-_44144244_44144286	0.0775597	UCAAGUA	AK145990|Erlin1|226144|ER lipid raft associated 1	NM_001164359|Erlin1|226144|ER lipid raft associated 1	NM_001164360|Erlin1|226144|ER lipid raft associated 1
mm9_v1_chr13_+_47289371_47289389	0.0766523	UCAAGUA	AK052846|Rnf144b|218215|ring finger protein 144B	NM_001170643|Rnf144b|218215|ring finger protein 144B	AK040939|Rnf144b|218215|ring finger protein 144B	BC025007|Rnf144b|218215|ring finger protein 144B
mm9_v1_chr19_-_4305954_4306041	0.0712932	UCAAGUA	BC053922|Adrbk1|110355|adrenergic receptor kinase, beta 1	NM_130863|Adrbk1|110355|adrenergic receptor kinase, beta 1	BC003196|Adrbk1|110355|adrenergic receptor kinase, beta 1	AF333028|Adrbk1|110355|adrenergic receptor kinase, beta 1
mm9_v1_chr8_-_125146633_125146634	0.0701383	UCAAGUA	BC141316|Pabpn1l|382035|poly(A)binding protein nuclear 1-like	BC141317|Pabpn1l|382035|poly(A)binding protein nuclear 1-like	BC145634|Pabpn1l|382035|poly(A)binding protein nuclear 1-like	NM_001007462|Pabpn1l|382035|poly(A)binding protein nuclear 1-like
mm9_v1_chr2_+_4638844_4638934	0.0689103	UCAAGUA	AK053896|Bend7|209645|BEN domain containing 7	NM_001190400|Bend7|209645|BEN domain containing 7	NM_178663|Bend7|209645|BEN domain containing 7	AK042822|Bend7|209645|BEN domain containing 7
mm9_v1_chr3_+_133903056_133903111	0.0681842	UCAAGUA	NM_001004367|Cxxc4|319478|CXXC finger 4
mm9_v1_chr12_-_100139666_100139693	0.0608767	UCAAGUA	AK081694|Eml5|319670|echinoderm microtubule associated protein like 5	NM_001081191|Eml5|319670|echinoderm microtubule associated protein like 5
mm9_v1_chr5_+_139856534_139856673	0.0565821	UCAAGUA	AK155280|Gpr146|80290|G protein-coupled receptor 146	AK154478|Gpr146|80290|G protein-coupled receptor 146	AK046512|Gpr146|80290|G protein-coupled receptor 146	AK089232|Gpr146|80290|G protein-coupled receptor 146	AK154708|Gpr146|80290|G protein-coupled receptor 146	AK155876|Gpr146|80290|G protein-coupled receptor 146	NM_030258|Gpr146|80290|G protein-coupled receptor 146	BC003323|Gpr146|80290|G protein-coupled receptor 146	AK050034|Gpr146|80290|G protein-coupled receptor 146	AK087100|Gpr146|80290|G protein-coupled receptor 146	AK155212|Gpr146|80290|G protein-coupled receptor 146
mm9_v1_chr2_-_7002344_7002370	0.054535	UCAAGUA	NM_001110229|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110230|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160292|Celf2|14007|CUGBP, Elav-like family member 2	AK159996|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr19_-_60866516_60866617	0.0529351	UCAAGUA	AK172899|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	U14172|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK149482|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK161634|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK145629|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK082006|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK087340|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK167010|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK043609|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	NM_010123|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK145132|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A
mm9_v1_chr7_+_30644997_30645134	0.0523015	UCAAGUA	NM_172740|Zfp420|233058|zinc finger protein 420	AK029387|Zfp420|233058|zinc finger protein 420	AK045435|Zfp420|233058|zinc finger protein 420	BC050249|Zfp420|233058|zinc finger protein 420	BC055817|Zfp420|233058|zinc finger protein 420	AK045821|Zfp420|233058|zinc finger protein 420
mm9_v1_chr4_-_148800731_148800857	0.0461457	UCAAGUA	AK016689|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	NM_022022|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	AF260926|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm9_v1_chr6_-_13627853_13628000	0.0451249	UCAAGUA	BC145708|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	BC145710|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK170526|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK046745|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	NM_175312|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene
mm9_v1_chrX_+_68463941_68463941	0.0432274	UCAAGUA	AK016445|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164190|Mtm1|17772|X-linked myotubular myopathy gene 1
mm9_v1_chr18_+_10325174_10325177	0.0393156	UCAAGUA	AK142556|Greb1l|381157|growth regulation by estrogen in breast cancer-like	NM_001083628|Greb1l|381157|growth regulation by estrogen in breast cancer-like
mm9_v1_chrX_-_9793824_9794045	0.0380185	UCAAGUA	AJ238396|Rpgr|19893|retinitis pigmentosa GTPase regulator	AF044677|Rpgr|19893|retinitis pigmentosa GTPase regulator	BC012661|Rpgr|19893|retinitis pigmentosa GTPase regulator	AK136298|Rpgr|19893|retinitis pigmentosa GTPase regulator	AK017192|Rpgr|19893|retinitis pigmentosa GTPase regulator	AK081631|Rpgr|19893|retinitis pigmentosa GTPase regulator	AK038652|Rpgr|19893|retinitis pigmentosa GTPase regulator	NM_001177950|Rpgr|19893|retinitis pigmentosa GTPase regulator	NM_001177951|Rpgr|19893|retinitis pigmentosa GTPase regulator	NM_001177953|Rpgr|19893|retinitis pigmentosa GTPase regulator	NM_001177954|Rpgr|19893|retinitis pigmentosa GTPase regulator	NM_011285|Rpgr|19893|retinitis pigmentosa GTPase regulator	AK029864|Rpgr|19893|retinitis pigmentosa GTPase regulator
mm9_v1_chr2_-_105843705_105843705	0.0370162	UCAAGUA	AK006521|Dnajc24|99349|DnaJ (Hsp40) homolog, subfamily C, member 24	NM_026992|Dnajc24|99349|DnaJ (Hsp40) homolog, subfamily C, member 24
mm9_v1_chr10_+_84565370_84565389	0.035502	UCAAGUA	NM_001013028|AI597468|103266|expressed sequence AI597468
mm9_v1_chr4_-_82970054_82970102	0.0351362	UCAAGUA	BC151021|Ttc39b|69863|tetratricopeptide repeat domain 39B	AK007856|Ttc39b|69863|tetratricopeptide repeat domain 39B	AK037208|Ttc39b|69863|tetratricopeptide repeat domain 39B	NM_027238|Ttc39b|69863|tetratricopeptide repeat domain 39B
mm9_v1_chr6_-_97567511_97567650	0.0322093	UCAAGUA	AK132280|Frmd4b|232288|FERM domain containing 4B	AK051779|Frmd4b|232288|FERM domain containing 4B	BC052390|Frmd4b|232288|FERM domain containing 4B	AB042027|Frmd4b|232288|FERM domain containing 4B	NM_145148|Frmd4b|232288|FERM domain containing 4B
mm9_v1_chr3_-_100489393_100489406	0.0305596	UCAAGUA	AK153336|Man1a2|17156|mannosidase, alpha, class 1A, member 2	NM_010763|Man1a2|17156|mannosidase, alpha, class 1A, member 2
mm9_v1_chr13_+_25147872_25147872	0.0243754	UCAAGUA	BC045136|Dcdc2a|195208|doublecortin domain containing 2a	NM_001195617|Dcdc2a|195208|doublecortin domain containing 2a	NM_177577|Dcdc2a|195208|doublecortin domain containing 2a
mm9_v1_chrX_-_101396356_101396482	0.0225765	UCAAGUA	AK220439|C77370|245555|expressed sequence C77370	DQ975302|C77370|245555|expressed sequence C77370	DQ975303|C77370|245555|expressed sequence C77370	NM_001077354|C77370|245555|expressed sequence C77370	AK038635|C77370|245555|expressed sequence C77370
mm9_v1_chr2_+_125684938_125684961	0.0225465	UCAAGUA	AK082521|Galk2|69976|galactokinase 2	NM_175154|Galk2|69976|galactokinase 2
mm9_v1_chr7_+_24919177_24919260	0.0143574	UCAAGUA	NM_019941|Zfp235|56525|zinc finger protein 235	AK045726|Zfp235|56525|zinc finger protein 235	AK002713|Zfp235|56525|zinc finger protein 235	AK147833|Zfp235|56525|zinc finger protein 235	AF167321|Zfp235|56525|zinc finger protein 235	AK139127|Zfp235|56525|zinc finger protein 235	BC099965|Zfp235|56525|zinc finger protein 235
mm9_v1_chr10_+_74523633_74523640	0.0103629	UCAAGUA	NM_001081412|Bcr|110279|breakpoint cluster region
mm9_v1_chr12_-_59370171_59370244	0.00884405	UCAAGUA	BC019452|Clec14a|66864|C-type lectin domain family 14, member a	AK014681|Clec14a|66864|C-type lectin domain family 14, member a	NM_025809|Clec14a|66864|C-type lectin domain family 14, member a
mm9_v1_chr14_+_34402392_34402458	0.00798755	UCAAGUA	AK017003|Ptpn20|19256|protein tyrosine phosphatase, non-receptor type 20	NM_008978|Ptpn20|19256|protein tyrosine phosphatase, non-receptor type 20	AK029493|Ptpn20|19256|protein tyrosine phosphatase, non-receptor type 20
