mm9_v1_chr17_-_51971946_51971971	26.9354	UCACAUU	AK088563|Satb1|20230|special AT-rich sequence binding protein 1	AK134040|Satb1|20230|special AT-rich sequence binding protein 1	U05252|Satb1|20230|special AT-rich sequence binding protein 1	AK037740|Satb1|20230|special AT-rich sequence binding protein 1	NM_009122|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr17_-_51951378_51951378	25.1783	UCACAUU	AK158518|Satb1|20230|special AT-rich sequence binding protein 1	NM_001163630|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr17_-_51972514_51972614	22.9218	UCACAUU	BC011132|Satb1|20230|special AT-rich sequence binding protein 1	NM_001163632|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr17_-_51965912_51965912	20.646	UCACAUU	NM_001163631|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr11_-_79894401_79894534	12.4878	UCACAUU	AF120152|Crlf3|54394|cytokine receptor-like factor 3	AK078569|Crlf3|54394|cytokine receptor-like factor 3	AK037880|Crlf3|54394|cytokine receptor-like factor 3	AK146798|Crlf3|54394|cytokine receptor-like factor 3	BC004780|Crlf3|54394|cytokine receptor-like factor 3	AK137528|Crlf3|54394|cytokine receptor-like factor 3	AF046060|Crlf3|54394|cytokine receptor-like factor 3	NM_018776|Crlf3|54394|cytokine receptor-like factor 3
mm9_v1_chr11_+_53583927_53584130	12.2234	UCACAUU	NM_001159396|Irf1|16362|interferon regulatory factor 1	BC003821|Irf1|16362|interferon regulatory factor 1
mm9_v1_chr9_-_85220730_85220905	11.4117	UCACAUU	NM_001160378|Fam46a|212943|family with sequence similarity 46, member A	AK135132|Fam46a|212943|family with sequence similarity 46, member A	NM_001160379|Fam46a|212943|family with sequence similarity 46, member A
mm9_v1_chr5_+_65194749_65194773	11.0521	UCACAUU	AK143838|Klf3|16599|Kruppel-like factor 3 (basic)	AK007959|Klf3|16599|Kruppel-like factor 3 (basic)	NM_008453|Klf3|16599|Kruppel-like factor 3 (basic)
mm9_v1_chr10_-_18731766_18731781	10.8086	UCACAUU	AK171326|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK172529|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	NM_001166402|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3
mm9_v1_chr8_+_59990639_59990759	10.536	UCACAUU	NM_008252|Hmgb2|97165|high mobility group box 2	AK012568|Hmgb2|97165|high mobility group box 2	AK146212|Hmgb2|97165|high mobility group box 2	AK151164|Hmgb2|97165|high mobility group box 2	AK008443|Hmgb2|97165|high mobility group box 2	AK153858|Hmgb2|97165|high mobility group box 2	Z46757|Hmgb2|97165|high mobility group box 2	AK003773|Hmgb2|97165|high mobility group box 2	AK011467|Hmgb2|97165|high mobility group box 2	AK135296|Hmgb2|97165|high mobility group box 2	AK135297|Hmgb2|97165|high mobility group box 2	BC046759|Hmgb2|97165|high mobility group box 2	BC083108|Hmgb2|97165|high mobility group box 2	BC002050|Hmgb2|97165|high mobility group box 2
mm9_v1_chr8_-_125201971_125202083	10.5277	UCACAUU	AK033680|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AK041887|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_001109873|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_177289|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr13_-_112599181_112599204	10.2706	UCACAUU	AB014614|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	AF117340|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	NM_011945|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1
mm9_v1_chr1_+_140860285_140860402	10.2556	UCACAUU	NM_001166501|Dennd1b|329260|DENN/MADD domain containing 1B	BC042698|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr15_+_80541675_80541764	10.1298	UCACAUU	AK048628|Tnrc6b|213988|trinucleotide repeat containing 6b	NM_144812|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr4_+_129497951_129498025	9.78156	UCACAUU	NM_001164745|Ptp4a2|19244|protein tyrosine phosphatase 4a2	AK018045|5830469G19Rik|76093|RIKEN cDNA 5830469G19 gene
mm9_v1_chr10_-_18735154_18735215	9.65077	UCACAUU	AK153238|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK088297|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK151921|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC050259|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC054806|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC060221|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	NM_009397|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3
mm9_v1_chr3_-_19211000_19211321	9.33322	UCACAUU	AY007702|Pde7a|18583|phosphodiesterase 7A	AK154521|Pde7a|18583|phosphodiesterase 7A	BC062909|Pde7a|18583|phosphodiesterase 7A	NM_001122759|Pde7a|18583|phosphodiesterase 7A
mm9_v1_chr8_-_125222837_125223008	9.20185	UCACAUU	BC141396|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	BC151156|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AF038029|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_009824|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr11_-_100711785_100712037	9.0874	UCACAUU	Z48539|Stat5b|20851|signal transducer and activator of transcription 5B	BC024319|Stat5b|20851|signal transducer and activator of transcription 5B	AK154664|Stat5b|20851|signal transducer and activator of transcription 5B	AK150098|Stat5b|20851|signal transducer and activator of transcription 5B	NM_001113563|Stat5b|20851|signal transducer and activator of transcription 5B	AK045531|Stat5b|20851|signal transducer and activator of transcription 5B
mm9_v1_chr4_-_34830178_34830200	9.08241	UCACAUU	AK017652|Zfp292|30046|zinc finger protein 292	AK018067|Zfp292|30046|zinc finger protein 292	NM_013889|Zfp292|30046|zinc finger protein 292	BC036997|Zfp292|30046|zinc finger protein 292
mm9_v1_chr15_-_5193681_5193830	8.63561	UCACAUU	BC009023|Ptger4|19219|prostaglandin E receptor 4 (subtype EP4)	NM_001136079|Ptger4|19219|prostaglandin E receptor 4 (subtype EP4)	D13458|Ptger4|19219|prostaglandin E receptor 4 (subtype EP4)	NM_008965|Ptger4|19219|prostaglandin E receptor 4 (subtype EP4)
mm9_v1_chr3_-_83844042_83844096	8.51279	UCACAUU	AY662647|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	AK053888|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	AK051240|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	AK137619|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	BC062940|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	AK052409|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	AK153996|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	AK154818|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	NM_172681|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	AK086232|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene
mm9_v1_chr16_+_52031661_52031695	8.47031	UCACAUU	NM_001033238|Cblb|208650|Casitas B-lineage lymphoma b	AK147367|Cblb|208650|Casitas B-lineage lymphoma b
mm9_v1_chr3_-_19164956_19164968	8.08633	UCACAUU	U68171|Pde7a|18583|phosphodiesterase 7A	AK168957|Pde7a|18583|phosphodiesterase 7A	NM_008802|Pde7a|18583|phosphodiesterase 7A
mm9_v1_chr6_+_15670660_15670769	7.85227	UCACAUU	AK165016|Mdfic|16543|MyoD family inhibitor domain containing	NM_175088|Mdfic|16543|MyoD family inhibitor domain containing	AK086117|Mdfic|16543|MyoD family inhibitor domain containing	AK172522|Mdfic|16543|MyoD family inhibitor domain containing	AK166462|Mdfic|16543|MyoD family inhibitor domain containing	AK080178|Mdfic|16543|MyoD family inhibitor domain containing	AK134050|Mdfic|16543|MyoD family inhibitor domain containing	AK048821|Mdfic|16543|MyoD family inhibitor domain containing
mm9_v1_chr4_+_102262447_102262471	7.76481	UCACAUU	AK051102|Pde4b|18578|phosphodiesterase 4B, cAMP specific	NM_001177981|Pde4b|18578|phosphodiesterase 4B, cAMP specific	BC071259|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr2_-_104656852_104656885	7.75119	UCACAUU	NM_001123327|Qser1|99003|glutamine and serine rich 1
mm9_v1_chr11_+_6446883_6447007	7.71348	UCACAUU	NM_001190343|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)	NM_146014|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)	AK155145|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)	BC029157|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)	AY442689|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)
mm9_v1_chr2_-_6805937_6806041	7.64715	UCACAUU	AK042749|Celf2|14007|CUGBP, Elav-like family member 2	AK164112|Celf2|14007|CUGBP, Elav-like family member 2	AK052102|Celf2|14007|CUGBP, Elav-like family member 2	AK135166|Celf2|14007|CUGBP, Elav-like family member 2	BC026856|Celf2|14007|CUGBP, Elav-like family member 2	AF090697|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110228|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160293|Celf2|14007|CUGBP, Elav-like family member 2	NM_010160|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr4_+_102260162_102260162	7.42067	UCACAUU	AK161341|Pde4b|18578|phosphodiesterase 4B, cAMP specific	NM_001177982|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr15_+_80629020_80629144	7.32146	UCACAUU	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr1_+_140864297_140864301	7.11335	UCACAUU	AK155727|Dennd1b|329260|DENN/MADD domain containing 1B	NM_181347|Dennd1b|329260|DENN/MADD domain containing 1B	BC141388|Dennd1b|329260|DENN/MADD domain containing 1B	BC141389|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr16_+_24393435_24393655	7.06961	UCACAUU	NM_178665|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK168431|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK085626|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK051345|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK045288|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK045341|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK051937|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK086307|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK169780|Lpp|210126|LIM domain containing preferred translocation partner in lipoma
mm9_v1_chr9_-_116084395_116084480	7.06584	UCACAUU	AK046561|Tgfbr2|21813|transforming growth factor, beta receptor II	AK159327|Tgfbr2|21813|transforming growth factor, beta receptor II	AK148167|Tgfbr2|21813|transforming growth factor, beta receptor II	AK053793|Tgfbr2|21813|transforming growth factor, beta receptor II	NM_009371|Tgfbr2|21813|transforming growth factor, beta receptor II	NM_029575|Tgfbr2|21813|transforming growth factor, beta receptor II
mm9_v1_chr19_+_32832002_32832163	6.84611	UCACAUU	NM_008960|Pten|19211|phosphatase and tensin homolog	AK164302|Pten|19211|phosphatase and tensin homolog	AK088717|Pten|19211|phosphatase and tensin homolog	AK076980|Pten|19211|phosphatase and tensin homolog
mm9_v1_chr4_+_102242664_102242699	6.76324	UCACAUU	NM_001177980|Pde4b|18578|phosphodiesterase 4B, cAMP specific	BC023751|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr4_+_129497720_129497746	6.70717	UCACAUU	NM_008974|Ptp4a2|19244|protein tyrosine phosphatase 4a2
mm9_v1_chr1_+_134212642_134212774	6.68794	UCACAUU	NM_001195025|Nuak2|74137|NUAK family, SNF1-like kinase, 2	NM_028778|Nuak2|74137|NUAK family, SNF1-like kinase, 2	AK034082|Nuak2|74137|NUAK family, SNF1-like kinase, 2	AK004737|Nuak2|74137|NUAK family, SNF1-like kinase, 2	AK033672|Nuak2|74137|NUAK family, SNF1-like kinase, 2	BC046833|Nuak2|74137|NUAK family, SNF1-like kinase, 2	BC033302|Nuak2|74137|NUAK family, SNF1-like kinase, 2
mm9_v1_chr6_-_39156706_39156787	6.62632	UCACAUU	AK136238|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042834|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	NM_001033430|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042327|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm9_v1_chr10_+_79451332_79451366	6.61832	UCACAUU	AK051845|Cnn2|12798|calponin 2	NM_007725|Cnn2|12798|calponin 2
mm9_v1_chr19_+_37000568_37000661	6.57729	UCACAUU	NM_001080706|Btaf1|107182|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae)
mm9_v1_chr19_+_56471580_56471618	6.36235	UCACAUU	NM_007611|Casp7|12369|caspase 7	Y13088|Casp7|12369|caspase 7
mm9_v1_chr11_+_53583515_53583660	6.28322	UCACAUU	NM_001159393|Irf1|16362|interferon regulatory factor 1	NM_008390|Irf1|16362|interferon regulatory factor 1	AK152005|Irf1|16362|interferon regulatory factor 1	AK152193|Irf1|16362|interferon regulatory factor 1	AK153514|Irf1|16362|interferon regulatory factor 1	AK155983|Irf1|16362|interferon regulatory factor 1	AK152104|Irf1|16362|interferon regulatory factor 1	AK157347|Irf1|16362|interferon regulatory factor 1	M21065|Irf1|16362|interferon regulatory factor 1	AY225160|Irf1|16362|interferon regulatory factor 1
mm9_v1_chr9_+_30838224_30838249	6.27085	UCACAUU	AK036895|Zbtb44|235132|zinc finger and BTB domain containing 44	NM_001115130|Zbtb44|235132|zinc finger and BTB domain containing 44	NM_172765|Zbtb44|235132|zinc finger and BTB domain containing 44
mm9_v1_chr17_+_31701700_31701809	6.1786	UCACAUU	NM_016670|Pknox1|18771|Pbx/knotted 1 homeobox	AF061270|Pknox1|18771|Pbx/knotted 1 homeobox	AK134000|Pknox1|18771|Pbx/knotted 1 homeobox
mm9_v1_chr2_-_144096253_144096308	6.1394	UCACAUU	AK007676|Snx5|69178|sorting nexin 5	AK029463|Snx5|69178|sorting nexin 5	NM_024225|Snx5|69178|sorting nexin 5
mm9_v1_chr14_+_99445595_99445694	6.12627	UCACAUU	AK034930|6720463M24Rik|77744|RIKEN cDNA 6720463M24 gene	NM_175265|6720463M24Rik|77744|RIKEN cDNA 6720463M24 gene	AK141389|6720463M24Rik|77744|RIKEN cDNA 6720463M24 gene	AK167430|6720463M24Rik|77744|RIKEN cDNA 6720463M24 gene	BC052183|6720463M24Rik|77744|RIKEN cDNA 6720463M24 gene
mm9_v1_chr1_+_39957733_39957796	6.0133	UCACAUU	NM_008696|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chr13_-_99696254_99696340	5.85487	UCACAUU	AK030580|Tnpo1|238799|transportin 1	AK087194|Tnpo1|238799|transportin 1	AK037001|Tnpo1|238799|transportin 1	AK029953|Tnpo1|238799|transportin 1	NM_178716|Tnpo1|238799|transportin 1
mm9_v1_chr13_+_44826121_44826271	5.79687	UCACAUU	D31967|Jarid2|16468|jumonji, AT rich interactive domain 2	BC052444|Jarid2|16468|jumonji, AT rich interactive domain 2	BC060695|Jarid2|16468|jumonji, AT rich interactive domain 2	NM_021878|Jarid2|16468|jumonji, AT rich interactive domain 2
mm9_v1_chrX_+_82819294_82819360	5.71538	UCACAUU	AK220185|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3	NM_025729|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm9_v1_chr7_+_87331726_87331785	5.68283	UCACAUU	AK145570|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	NM_013659|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	AK028896|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	AK173249|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm9_v1_chr6_+_17413930_17414106	5.41251	UCACAUU	NM_008591|Met|17295|met proto-oncogene	AK170560|Met|17295|met proto-oncogene	AK148258|Met|17295|met proto-oncogene
mm9_v1_chr16_-_32079317_32079415	5.36237	UCACAUU	BC086650|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2	NM_177326|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2
mm9_v1_chr2_+_160471623_160471632	5.33031	UCACAUU	AK145538|Top1|21969|topoisomerase (DNA) I	NM_009408|Top1|21969|topoisomerase (DNA) I
mm9_v1_chr11_+_77499638_77499656	5.31916	UCACAUU	AK030113|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK160601|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	NM_001024205|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK170764|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK122494|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2
mm9_v1_chr2_-_7317824_7317824	5.21237	UCACAUU	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr13_-_99660903_99660996	5.15833	UCACAUU	BC055372|Tnpo1|238799|transportin 1	AK167049|Tnpo1|238799|transportin 1	AK045132|Tnpo1|238799|transportin 1	NM_001048267|Tnpo1|238799|transportin 1
mm9_v1_chr18_+_49992650_49992666	5.15121	UCACAUU	AY590892|Dmxl1|240283|Dmx-like 1	NM_001081371|Dmxl1|240283|Dmx-like 1
mm9_v1_chr5_+_145928011_145928163	5.13225	UCACAUU	AK046064|Cpsf4|54188|cleavage and polyadenylation specific factor 4	NM_178576|Cpsf4|54188|cleavage and polyadenylation specific factor 4
mm9_v1_chr9_-_14556556_14556606	5.04805	UCACAUU	BC137588|Fut4|14345|fucosyltransferase 4	AK041752|Fut4|14345|fucosyltransferase 4	NM_010242|Fut4|14345|fucosyltransferase 4
mm9_v1_chr6_+_38383918_38383949	5.04661	UCACAUU	NM_177185|Ubn2|320538|ubinuclein 2	AK013733|Ubn2|320538|ubinuclein 2	BC051458|Ubn2|320538|ubinuclein 2
mm9_v1_chr16_+_24721940_24721951	5.04643	UCACAUU	AK029567|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	NM_001145954|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK076989|Lpp|210126|LIM domain containing preferred translocation partner in lipoma
mm9_v1_chrX_+_17739762_17739792	5.03394	UCACAUU	AK164941|Kdm6a|22289|4lysine (K)-specific demethylase 6A	AK144654|Kdm6a|22289|4lysine (K)-specific demethylase 6A	AK080370|Kdm6a|22289|4lysine (K)-specific demethylase 6A	BC053433|Kdm6a|22289|4lysine (K)-specific demethylase 6A	NM_009483|Kdm6a|22289|4lysine (K)-specific demethylase 6A
mm9_v1_chr4_+_15192892_15192977	5.01129	UCACAUU	AK156282|Tmem64|100201|transmembrane protein 64	NM_181401|Tmem64|100201|transmembrane protein 64	AY147882|Tmem64|100201|transmembrane protein 64	BC030341|Tmem64|100201|transmembrane protein 64
mm9_v1_chr3_-_51129908_51129958	5.00555	UCACAUU	AF256216|Elf2|69257|E74-like factor 2	AF256217|Elf2|69257|E74-like factor 2	NM_023502|Elf2|69257|E74-like factor 2	BC092057|Elf2|69257|E74-like factor 2
mm9_v1_chr12_-_113146259_113146309	4.97164	UCACAUU	BC054788|Ppp1r13b|21981|protein phosphatase 1, regulatory (inhibitor) subunit 13B	NM_011625|Ppp1r13b|21981|protein phosphatase 1, regulatory (inhibitor) subunit 13B	BC053092|Ppp1r13b|21981|protein phosphatase 1, regulatory (inhibitor) subunit 13B	AK148849|Ppp1r13b|21981|protein phosphatase 1, regulatory (inhibitor) subunit 13B
mm9_v1_chr16_+_24448176_24448242	4.91549	UCACAUU	AK054550|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	NM_001145952|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	BC085321|Lpp|210126|LIM domain containing preferred translocation partner in lipoma
mm9_v1_chr14_+_15535538_15535592	4.8649	UCACAUU	AK152233|Slc4a7|218756|solute carrier family 4, sodium bicarbonate cotransporter, member 7	AK153567|Slc4a7|218756|solute carrier family 4, sodium bicarbonate cotransporter, member 7	NM_001033270|Slc4a7|218756|solute carrier family 4, sodium bicarbonate cotransporter, member 7	AK088400|Slc4a7|218756|solute carrier family 4, sodium bicarbonate cotransporter, member 7	GU386352|Slc4a7|218756|solute carrier family 4, sodium bicarbonate cotransporter, member 7	GU386353|Slc4a7|218756|solute carrier family 4, sodium bicarbonate cotransporter, member 7
mm9_v1_chr2_+_163899842_163899948	4.85175	UCACAUU	BC054521|Stk4|58231|serine/threonine kinase 4	AF271360|Stk4|58231|serine/threonine kinase 4	AK028838|Stk4|58231|serine/threonine kinase 4	NM_021420|Stk4|58231|serine/threonine kinase 4
mm9_v1_chr10_-_36858671_36858801	4.79558	UCACAUU	BC046601|Marcks|17118|myristoylated alanine rich protein kinase C substrate	M60474|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC002068|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC039911|Marcks|17118|myristoylated alanine rich protein kinase C substrate	NM_008538|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr2_+_153567020_153567113	4.73568	UCACAUU	NM_007896|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1	BC043333|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1	AK154245|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1	AK013626|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1	U51196|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1	AK146206|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1	BC052728|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1	BC064444|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1
mm9_v1_chr18_+_78135191_78135231	4.62608	UCACAUU	NM_001195633|5430411K18Rik|100502841|RIKEN cDNA 5430411K18 gene
mm9_v1_chr2_+_103264218_103264240	4.60568	UCACAUU	AK145214|Elf5|13711|E74-like factor 5	NM_010125|Elf5|13711|E74-like factor 5	AF049702|Elf5|13711|E74-like factor 5
mm9_v1_chr1_+_107886982_107886982	4.51299	UCACAUU	AK046562|Zcchc2|227449|zinc finger, CCHC domain containing 2	NM_001122675|Zcchc2|227449|zinc finger, CCHC domain containing 2	NM_001122676|Zcchc2|227449|zinc finger, CCHC domain containing 2
mm9_v1_chr4_+_155186568_155186886	4.46389	UCACAUU	NM_207678|Ccnl2|56036|cyclin L2	AK007552|Ccnl2|56036|cyclin L2	BC132295|Ccnl2|56036|cyclin L2	AK048244|Ccnl2|56036|cyclin L2	AK156037|Ccnl2|56036|cyclin L2	AB041605|Ccnl2|56036|cyclin L2	AY337018|Ccnl2|56036|cyclin L2	AK169857|Ccnl2|56036|cyclin L2	BC023747|Ccnl2|56036|cyclin L2	AF211859|Ccnl2|56036|cyclin L2	AK044204|Ccnl2|56036|cyclin L2	AK008585|Ccnl2|56036|cyclin L2	AK138938|Ccnl2|56036|cyclin L2
mm9_v1_chr11_+_45869473_45869501	4.35359	UCACAUU	NM_009616|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)	BC093480|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm9_v1_chr2_-_7317513_7317626	4.34788	UCACAUU	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr15_-_96472600_96472827	4.28808	UCACAUU	AK040250|Slc38a1|105727|solute carrier family 38, member 1	AK029189|Slc38a1|105727|solute carrier family 38, member 1	BC066815|Slc38a1|105727|solute carrier family 38, member 1	BC030378|Slc38a1|105727|solute carrier family 38, member 1	AK049173|Slc38a1|105727|solute carrier family 38, member 1	AK050914|Slc38a1|105727|solute carrier family 38, member 1	AK082683|Slc38a1|105727|solute carrier family 38, member 1	NM_001166456|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr8_+_47825098_47825208	4.26813	UCACAUU	NM_008391|Irf2|16363|interferon regulatory factor 2	AK087926|Irf2|16363|interferon regulatory factor 2	AK155025|Irf2|16363|interferon regulatory factor 2	BC110666|Irf2|16363|interferon regulatory factor 2	BC006577|Irf2|16363|interferon regulatory factor 2	AK036652|Irf2|16363|interferon regulatory factor 2	J03168|Irf2|16363|interferon regulatory factor 2
mm9_v1_chr15_-_93105514_93105610	4.23483	UCACAUU	AK147387|Gxylt1|223827|glucoside xylosyltransferase 1	NM_001033275|Gxylt1|223827|glucoside xylosyltransferase 1	BC141302|Gxylt1|223827|glucoside xylosyltransferase 1	BC171972|Gxylt1|223827|glucoside xylosyltransferase 1
mm9_v1_chr1_+_53353919_53353984	4.20652	UCACAUU	NM_145517|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	AK050385|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	AK052927|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	AK077562|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	BC023695|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	BC025572|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	BC012315|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)
mm9_v1_chr1_-_183772442_183772553	4.18127	UCACAUU	BC021516|Lbr|98386|lamin B receptor	AK166850|Lbr|98386|lamin B receptor	AK167157|Lbr|98386|lamin B receptor	AK033459|Lbr|98386|lamin B receptor	AK088179|Lbr|98386|lamin B receptor	AK030606|Lbr|98386|lamin B receptor	BC042522|Lbr|98386|lamin B receptor	AK151798|Lbr|98386|lamin B receptor	AK161762|Lbr|98386|lamin B receptor	AK028426|Lbr|98386|lamin B receptor	NM_133815|Lbr|98386|lamin B receptor
mm9_v1_chr5_-_66489416_66489417	4.13909	UCACAUU	NM_139065|Rbm47|245945|RNA binding motif protein 47	BC013481|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr16_+_45224449_45224465	4.10552	UCACAUU	AK041334|Btla|208154|B and T lymphocyte associated	BC108963|Btla|208154|B and T lymphocyte associated	BC108964|Btla|208154|B and T lymphocyte associated	NM_001037719|Btla|208154|B and T lymphocyte associated	NM_177584|Btla|208154|B and T lymphocyte associated	AY293285|Btla|208154|B and T lymphocyte associated
mm9_v1_chr5_-_66542161_66542216	3.99181	UCACAUU	AK035620|Rbm47|245945|RNA binding motif protein 47	AK142584|Rbm47|245945|RNA binding motif protein 47	AK085733|Rbm47|245945|RNA binding motif protein 47	NM_178446|Rbm47|245945|RNA binding motif protein 47	BC112902|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr15_-_96472392_96472392	3.91913	UCACAUU	AK034130|Slc38a1|105727|solute carrier family 38, member 1	NM_134086|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr10_+_53316720_53316974	3.90902	UCACAUU	AK010210|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	NM_025541|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK012376|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK031513|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK088618|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK007804|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	BC027628|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)
mm9_v1_chr16_-_64786146_64786199	3.89887	UCACAUU	BC068018|Zfp654|72020|zinc finger protein 654	NM_028059|Zfp654|72020|zinc finger protein 654	AK005508|Zfp654|72020|zinc finger protein 654
mm9_v1_chr18_+_36720238_36720319	3.87714	UCACAUU	NM_175375|Ankhd1|108857|ankyrin repeat and KH domain containing 1	AK080941|Ankhd1|108857|ankyrin repeat and KH domain containing 1
mm9_v1_chr5_-_66543123_66543228	3.77794	UCACAUU	AK170082|Rbm47|245945|RNA binding motif protein 47	NM_001127382|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr2_-_33286793_33286890	3.77391	UCACAUU	NM_001085507|Zbtb34|241311|zinc finger and BTB domain containing 34
mm9_v1_chr7_+_130267398_130267398	3.769	UCACAUU	NM_144925|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr13_-_104710374_104710739	3.67306	UCACAUU	BC141178|Erbb2ip|59079|Erbb2 interacting protein	BC141188|Erbb2ip|59079|Erbb2 interacting protein	BC145498|Erbb2ip|59079|Erbb2 interacting protein	BC145509|Erbb2ip|59079|Erbb2 interacting protein	AK169529|Erbb2ip|59079|Erbb2 interacting protein	NM_001005868|Erbb2ip|59079|Erbb2 interacting protein	NM_021563|Erbb2ip|59079|Erbb2 interacting protein
mm9_v1_chr19_-_41922577_41922621	3.60579	UCACAUU	BC034214|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	BC085510|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	AK081171|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	NM_177603|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2
mm9_v1_chr2_-_84265422_84265424	3.56178	UCACAUU	AK137210|Calcrl|54598|calcitonin receptor-like	NM_018782|Calcrl|54598|calcitonin receptor-like	AB015595|Calcrl|54598|calcitonin receptor-like
mm9_v1_chr18_+_73732352_73732560	3.55659	UCACAUU	NM_001039214|Mex3c|240396|mex3 homolog C (C. elegans)	AK133686|Mex3c|240396|mex3 homolog C (C. elegans)
mm9_v1_chr1_-_140516239_140516335	3.51826	UCACAUU	BC037697|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK165583|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	BC026541|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK035502|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	NM_021605|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK078639|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK088173|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK149308|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7
mm9_v1_chr14_+_26513611_26513728	3.4874	UCACAUU	AK028349|Ppif|105675|peptidylprolyl isomerase F (cyclophilin F)	BC004041|Ppif|105675|peptidylprolyl isomerase F (cyclophilin F)	NM_134084|Ppif|105675|peptidylprolyl isomerase F (cyclophilin F)
mm9_v1_chr8_+_108160437_108160479	3.47879	UCACAUU	NM_181322|Ctcf|13018|CCCTC-binding factor	U51037|Ctcf|13018|CCCTC-binding factor	BC037456|Ctcf|13018|CCCTC-binding factor	AK140164|Ctcf|13018|CCCTC-binding factor	BC009129|Ctcf|13018|CCCTC-binding factor	BC024382|Ctcf|13018|CCCTC-binding factor	BC049131|Ctcf|13018|CCCTC-binding factor	AK076192|Ctcf|13018|CCCTC-binding factor
mm9_v1_chr12_+_84973146_84973375	3.39883	UCACAUU	NM_027349|Rbm25|67039|RNA binding motif protein 25	AK011403|Rbm25|67039|RNA binding motif protein 25	AK164367|Rbm25|67039|RNA binding motif protein 25	AK151910|Rbm25|67039|RNA binding motif protein 25	AK144341|AA645497|100499479|expressed sequence AA645497
mm9_v1_chr2_-_7002344_7002370	3.39375	UCACAUU	NM_001110229|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110230|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160292|Celf2|14007|CUGBP, Elav-like family member 2	AK159996|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr15_-_96473193_96473343	3.38912	UCACAUU	AK162612|Slc38a1|105727|solute carrier family 38, member 1	AK081724|Slc38a1|105727|solute carrier family 38, member 1	NM_001166458|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr15_+_84753817_84753857	3.35015	UCACAUU	AK141750|Nup50|18141|nucleoporin 50	AK165581|Nup50|18141|nucleoporin 50	AK133562|Nup50|18141|nucleoporin 50	BC060234|Nup50|18141|nucleoporin 50	AK161713|Nup50|18141|nucleoporin 50	BC065102|Nup50|18141|nucleoporin 50	AK087706|Nup50|18141|nucleoporin 50	AK168888|Nup50|18141|nucleoporin 50	AK151947|Nup50|18141|nucleoporin 50	AK152309|Nup50|18141|nucleoporin 50	BC059239|Nup50|18141|nucleoporin 50	NM_016714|Nup50|18141|nucleoporin 50
mm9_v1_chrX_-_45816308_45816348	3.33029	UCACAUU	AK155709|Elf4|56501|E74-like factor 4 (ets domain transcription factor)	NM_019680|Elf4|56501|E74-like factor 4 (ets domain transcription factor)	AK084896|Elf4|56501|E74-like factor 4 (ets domain transcription factor)
mm9_v1_chr5_+_142877419_142877473	3.31456	UCACAUU	NM_199068|Foxk1|17425|forkhead box K1	AK147375|Foxk1|17425|forkhead box K1	L26507|Foxk1|17425|forkhead box K1	U95016|Foxk1|17425|forkhead box K1	BC060238|Foxk1|17425|forkhead box K1
mm9_v1_chr11_-_106781995_106782028	3.2692	UCACAUU	AK012060|Smurf2|66313|SMAD specific E3 ubiquitin protein ligase 2	NM_025481|Smurf2|66313|SMAD specific E3 ubiquitin protein ligase 2
mm9_v1_chr18_-_89063572_89063675	3.20665	UCACAUU	BC094443|Socs6|54607|suppressor of cytokine signaling 6	AK028701|Socs6|54607|suppressor of cytokine signaling 6	AK083341|Socs6|54607|suppressor of cytokine signaling 6	AK028665|Socs6|54607|suppressor of cytokine signaling 6	AK031164|Socs6|54607|suppressor of cytokine signaling 6	AK044946|Socs6|54607|suppressor of cytokine signaling 6	NM_018821|Socs6|54607|suppressor of cytokine signaling 6	BC085245|Socs6|54607|suppressor of cytokine signaling 6	AK031929|Socs6|54607|suppressor of cytokine signaling 6	AK019993|Socs6|54607|suppressor of cytokine signaling 6
mm9_v1_chr14_+_57506630_57506655	3.20376	UCACAUU	NM_029498|Zmym2|76007|zinc finger, MYM-type 2	BC141403|Zmym2|76007|zinc finger, MYM-type 2
mm9_v1_chr7_-_123182257_123182257	3.17031	UCACAUU	AK048143|Sox6|20679|SRY-box containing gene 6	NM_001025559|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr13_-_8870975_8870975	3.15278	UCACAUU	NM_001039388|Wdr37|207615|WD repeat domain 37
mm9_v1_chr1_-_13364092_13364163	3.14011	UCACAUU	AF000582|Ncoa2|17978|nuclear receptor coactivator 2	AK048972|Ncoa2|17978|nuclear receptor coactivator 2	AK087443|Ncoa2|17978|nuclear receptor coactivator 2	U39060|Ncoa2|17978|nuclear receptor coactivator 2	AK052117|Ncoa2|17978|nuclear receptor coactivator 2	NM_001077695|Ncoa2|17978|nuclear receptor coactivator 2	NM_008678|Ncoa2|17978|nuclear receptor coactivator 2
mm9_v1_chr7_+_105851755_105851872	3.09024	UCACAUU	AK013663|Prkrir|72981|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)	BC049103|Prkrir|72981|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)	NM_028410|Prkrir|72981|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)
mm9_v1_chr14_-_75347637_75347721	3.07427	UCACAUU	AK129264|Lrch1|380916|leucine-rich repeats and calponin homology (CH) domain containing 1	AK143909|Lrch1|380916|leucine-rich repeats and calponin homology (CH) domain containing 1	NM_001033439|Lrch1|380916|leucine-rich repeats and calponin homology (CH) domain containing 1
mm9_v1_chr5_+_30890386_30890554	3.05262	UCACAUU	AF065162|Kcnk3|16527|potassium channel, subfamily K, member 3	BC032047|Kcnk3|16527|potassium channel, subfamily K, member 3	NM_010608|Kcnk3|16527|potassium channel, subfamily K, member 3	AB013345|Kcnk3|16527|potassium channel, subfamily K, member 3
mm9_v1_chr2_+_103252254_103252254	3.02984	UCACAUU	AK076331|Elf5|13711|E74-like factor 5	NM_001145813|Elf5|13711|E74-like factor 5
mm9_v1_chr11_-_74983756_74983756	3.00229	UCACAUU	AJ585343|Hic1|15248|hypermethylated in cancer 1	NM_010430|Hic1|15248|hypermethylated in cancer 1
mm9_v1_chr12_+_112088488_112088532	2.96265	UCACAUU	BC150732|Zfp839|72805|zinc finger protein 839	NM_028365|Zfp839|72805|zinc finger protein 839	AK013356|Zfp839|72805|zinc finger protein 839
mm9_v1_chr15_-_82742536_82742563	2.95848	UCACAUU	BC138038|Tcf20|21411|transcription factor 20	BC171946|Tcf20|21411|transcription factor 20	AY007594|Tcf20|21411|transcription factor 20	NM_001114140|Tcf20|21411|transcription factor 20	NM_013836|Tcf20|21411|transcription factor 20
mm9_v1_chr15_-_58046428_58046480	2.91918	UCACAUU	AK014793|Fbxo32|67731|F-box protein 32	NM_026346|Fbxo32|67731|F-box protein 32	AF441120|Fbxo32|67731|F-box protein 32
mm9_v1_chr17_-_44873596_44873596	2.91346	UCACAUU	D14636|Runx2|12393|runt related transcription factor 2	D14637|Runx2|12393|runt related transcription factor 2	NM_001145920|Runx2|12393|runt related transcription factor 2
mm9_v1_chr14_+_31832323_31832337	2.9132	UCACAUU	AK165182|Pbrm1|66923|polybromo 1	NM_001081251|Pbrm1|66923|polybromo 1
mm9_v1_chr9_-_96918641_96918773	2.87721	UCACAUU	BC055705|Spsb4|211949|splA/ryanodine receptor domain and SOCS box containing 4	AK142195|Spsb4|211949|splA/ryanodine receptor domain and SOCS box containing 4	AF403039|Spsb4|211949|splA/ryanodine receptor domain and SOCS box containing 4	NM_145134|Spsb4|211949|splA/ryanodine receptor domain and SOCS box containing 4
mm9_v1_chr5_+_124889925_124890006	2.85873	UCACAUU	NM_030241|Setd8|67956|SET domain containing (lysine methyltransferase) 8	AK030904|Setd8|67956|SET domain containing (lysine methyltransferase) 8	AK088097|Setd8|67956|SET domain containing (lysine methyltransferase) 8	BC108333|Setd8|67956|SET domain containing (lysine methyltransferase) 8
mm9_v1_chr10_-_90634236_90634341	2.84783	UCACAUU	U39073|Tmpo|21917|thymopoietin	U39078|Tmpo|21917|thymopoietin	U39074|Tmpo|21917|thymopoietin	U39075|Tmpo|21917|thymopoietin	U39076|Tmpo|21917|thymopoietin	U39077|Tmpo|21917|thymopoietin	AK150515|Tmpo|21917|thymopoietin	AK153281|Tmpo|21917|thymopoietin	AK150305|Tmpo|21917|thymopoietin	AK141845|Tmpo|21917|thymopoietin	AK156206|Tmpo|21917|thymopoietin	AK165282|Tmpo|21917|thymopoietin	AK151936|Tmpo|21917|thymopoietin	AK152737|Tmpo|21917|thymopoietin	AK165851|Tmpo|21917|thymopoietin	AK144642|Tmpo|21917|thymopoietin	AK146903|Tmpo|21917|thymopoietin	NM_001080129|Tmpo|21917|thymopoietin	NM_001080130|Tmpo|21917|thymopoietin	NM_001080131|Tmpo|21917|thymopoietin	NM_001080132|Tmpo|21917|thymopoietin	NM_001080134|Tmpo|21917|thymopoietin	NM_011605|Tmpo|21917|thymopoietin
mm9_v1_chr3_-_115710131_115710328	2.83033	UCACAUU	AF529196|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	AF233322|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	BC050193|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	BC017136|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	AK075802|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	AK010008|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	NM_023214|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7
mm9_v1_chr8_+_36650839_36650928	2.73822	UCACAUU	BC082308|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1	NM_001081279|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1
mm9_v1_chr15_+_59480204_59480213	2.72544	UCACAUU	AK033358|Trib1|211770|tribbles homolog 1 (Drosophila)	AK028626|Trib1|211770|tribbles homolog 1 (Drosophila)	AK040738|Trib1|211770|tribbles homolog 1 (Drosophila)	AK041212|Trib1|211770|tribbles homolog 1 (Drosophila)	AK162876|Trib1|211770|tribbles homolog 1 (Drosophila)	NM_144549|Trib1|211770|tribbles homolog 1 (Drosophila)
mm9_v1_chr3_-_95622554_95622875	2.7154	UCACAUU	AK129150|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK154692|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	BC067054|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK083674|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK087157|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK012860|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK015972|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	NM_001081293|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2
mm9_v1_chr4_+_48137778_48137803	2.58603	UCACAUU	AK014718|Stx17|67727|syntaxin 17	AK154503|Stx17|67727|syntaxin 17	NM_026343|Stx17|67727|syntaxin 17	AK011400|Stx17|67727|syntaxin 17	AK135240|Stx17|67727|syntaxin 17	AK018526|Stx17|67727|syntaxin 17	AK034718|Stx17|67727|syntaxin 17	BC028639|Stx17|67727|syntaxin 17
mm9_v1_chr7_-_19895354_19895395	2.55623	UCACAUU	NM_008036|Fosb|14282|FBJ osteosarcoma oncogene B
mm9_v1_chr12_-_85749901_85749994	2.54125	UCACAUU	AK085871|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK088455|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK081435|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK037736|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK163688|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK031581|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK036641|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK045828|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK080265|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	NM_001026214|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	NM_007647|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5
mm9_v1_chr2_-_33323966_33324113	2.51246	UCACAUU	AK206442|Zbtb43|71834|zinc finger and BTB domain containing 43	AK212293|Zbtb43|71834|zinc finger and BTB domain containing 43	AK122277|Zbtb43|71834|zinc finger and BTB domain containing 43	AK005818|Zbtb43|71834|zinc finger and BTB domain containing 43	AK147806|Zbtb43|71834|zinc finger and BTB domain containing 43	BC043117|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_001025594|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_027947|Zbtb43|71834|zinc finger and BTB domain containing 43
mm9_v1_chr5_+_104183148_104183208	2.50842	UCACAUU	AK142554|Aff1|17355|AF4/FMR2 family, member 1	NM_133919|Aff1|17355|AF4/FMR2 family, member 1
mm9_v1_chr11_+_66984528_66984720	2.5047	UCACAUU	DQ020160|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	NM_001039545|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	AK036437|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	AY963799|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	DQ020161|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	DQ020162|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	BC008538|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult
mm9_v1_chr17_-_44951745_44951745	2.42668	UCACAUU	DQ458792|Runx2|12393|runt related transcription factor 2	NM_001146038|Runx2|12393|runt related transcription factor 2	NM_009820|Runx2|12393|runt related transcription factor 2
mm9_v1_chrX_+_98449866_98450159	2.38335	UCACAUU	AF114260|Foxo4|54601|forkhead box O4	NM_018789|Foxo4|54601|forkhead box O4	AK157830|Foxo4|54601|forkhead box O4	BC099460|Foxo4|54601|forkhead box O4	BC139275|Foxo4|54601|forkhead box O4	BC139304|Foxo4|54601|forkhead box O4	AB032770|Foxo4|54601|forkhead box O4	AB221664|Foxo4|54601|forkhead box O4
mm9_v1_chr8_-_118230771_118230819	2.3604	UCACAUU	AK132165|Maf|17132|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog	NM_001025577|Maf|17132|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
mm9_v1_chr6_+_86354212_86354404	2.35067	UCACAUU	NM_001164078|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	NM_001164079|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	NM_011585|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	AK144222|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	AK088486|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC023813|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC046812|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC027826|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	U55862|Tia1|21841|cytotoxic granule-associated RNA binding protein 1
mm9_v1_chr7_-_121261292_121261300	2.33333	UCACAUU	AK011419|Rras2|66922|related RAS viral (r-ras) oncogene homolog 2	AK078870|Rras2|66922|related RAS viral (r-ras) oncogene homolog 2	NM_025846|Rras2|66922|related RAS viral (r-ras) oncogene homolog 2
mm9_v1_chr11_-_100683830_100683883	2.33173	UCACAUU	AY040231|Stat5b|20851|signal transducer and activator of transcription 5B	AY042906|Stat5b|20851|signal transducer and activator of transcription 5B	AY044901|Stat5b|20851|signal transducer and activator of transcription 5B	AY044902|Stat5b|20851|signal transducer and activator of transcription 5B	AY044903|Stat5b|20851|signal transducer and activator of transcription 5B	U21110|Stat5b|20851|signal transducer and activator of transcription 5B	AK088966|Stat5b|20851|signal transducer and activator of transcription 5B	AK154014|Stat5b|20851|signal transducer and activator of transcription 5B	NM_011489|Stat5b|20851|signal transducer and activator of transcription 5B
mm9_v1_chr4_-_6917628_6917956	2.29616	UCACAUU	AK161718|Tox|252838|thymocyte selection-associated high mobility group box	AK161578|Tox|252838|thymocyte selection-associated high mobility group box	AF472514|Tox|252838|thymocyte selection-associated high mobility group box	AK029694|Tox|252838|thymocyte selection-associated high mobility group box	AK133397|Tox|252838|thymocyte selection-associated high mobility group box	BC080732|Tox|252838|thymocyte selection-associated high mobility group box	AK038671|Tox|252838|thymocyte selection-associated high mobility group box	NM_145711|Tox|252838|thymocyte selection-associated high mobility group box
mm9_v1_chr14_-_21000972_21001030	2.27741	UCACAUU	BC051088|Kcnk5|16529|potassium channel, subfamily K, member 5	BC058164|Kcnk5|16529|potassium channel, subfamily K, member 5	AK085330|Kcnk5|16529|potassium channel, subfamily K, member 5	AK172608|Kcnk5|16529|potassium channel, subfamily K, member 5	NM_021542|Kcnk5|16529|potassium channel, subfamily K, member 5	BC034012|Kcnk5|16529|potassium channel, subfamily K, member 5	AK132172|Kcnk5|16529|potassium channel, subfamily K, member 5
mm9_v1_chr11_+_117515548_117515602	2.26588	UCACAUU	NM_198022|Tnrc6c|217351|trinucleotide repeat containing 6C
mm9_v1_chr14_+_14845004_14845173	2.25521	UCACAUU	AK046679|Atxn7|246103|ataxin 7	NM_139227|Atxn7|246103|ataxin 7	BC137846|Atxn7|246103|ataxin 7
mm9_v1_chr5_+_97426665_97426877	2.23688	UCACAUU	AY050249|Bmp2k|140780|BMP2 inducible kinase	NM_080708|Bmp2k|140780|BMP2 inducible kinase	AK046752|Bmp2k|140780|BMP2 inducible kinase
mm9_v1_chr10_+_19654195_19654331	2.18671	UCACAUU	AB006787|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5	BC116627|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5	BC116628|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5	BC133697|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5	NM_008580|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5
mm9_v1_chr5_+_104183591_104183591	2.14379	UCACAUU	AK143742|Aff1|17355|AF4/FMR2 family, member 1	NM_001080798|Aff1|17355|AF4/FMR2 family, member 1
mm9_v1_chr6_-_119988624_119988681	2.1361	UCACAUU	AK172935|Wnk1|232341|WNK lysine deficient protein kinase 1	BC055788|Wnk1|232341|WNK lysine deficient protein kinase 1	BC046916|Wnk1|232341|WNK lysine deficient protein kinase 1	AK133738|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_001185020|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_001185021|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_198703|Wnk1|232341|WNK lysine deficient protein kinase 1
mm9_v1_chr2_+_164286416_164286607	2.12166	UCACAUU	AK007882|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	NM_025575|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK139605|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK011753|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK003071|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK013220|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK032073|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK009684|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK075770|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK005510|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK148305|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK005249|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
mm9_v1_chr19_-_4305954_4306041	2.1211	UCACAUU	BC053922|Adrbk1|110355|adrenergic receptor kinase, beta 1	NM_130863|Adrbk1|110355|adrenergic receptor kinase, beta 1	BC003196|Adrbk1|110355|adrenergic receptor kinase, beta 1	AF333028|Adrbk1|110355|adrenergic receptor kinase, beta 1
mm9_v1_chr6_+_83065466_83065564	2.11905	UCACAUU	AK144946|Mogs|57377|mannosyl-oligosaccharide glucosidase	BC051949|Mogs|57377|mannosyl-oligosaccharide glucosidase	NM_020619|Mogs|57377|mannosyl-oligosaccharide glucosidase	AK157286|Mogs|57377|mannosyl-oligosaccharide glucosidase
mm9_v1_chr1_-_63160764_63160840	2.11452	UCACAUU	AK049468|Ino80d|227195|INO80 complex subunit D	NM_001081436|Ino80d|227195|INO80 complex subunit D	NM_001114609|Ino80d|227195|INO80 complex subunit D
mm9_v1_chr14_-_67627598_67627723	2.11351	UCACAUU	AK220143|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	BC049081|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK139950|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK004667|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	BC085237|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK018668|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK155040|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AY057069|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK013467|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK007920|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AF067395|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK168482|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK169391|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	NM_009761|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like
mm9_v1_chr8_-_63433528_63433596	2.11058	UCACAUU	BC057133|Clcn3|12725|chloride channel 3	NM_173876|Clcn3|12725|chloride channel 3
mm9_v1_chr11_+_87476588_87476588	2.1025	UCACAUU	AK032782|Rnf43|207742|ring finger protein 43	NM_172448|Rnf43|207742|ring finger protein 43
mm9_v1_chr11_-_84642465_84642548	2.08791	UCACAUU	BC022224|Dhrs11|192970|dehydrogenase/reductase (SDR family) member 11	AK157041|Dhrs11|192970|dehydrogenase/reductase (SDR family) member 11	NM_177564|Dhrs11|192970|dehydrogenase/reductase (SDR family) member 11
mm9_v1_chr6_-_83391623_83391671	2.0623	UCACAUU	AK044758|Tet3|194388|tet oncogene family member 3	AK046543|Tet3|194388|tet oncogene family member 3	AK046552|Tet3|194388|tet oncogene family member 3	AK046553|Tet3|194388|tet oncogene family member 3	NM_183138|Tet3|194388|tet oncogene family member 3
mm9_v1_chr17_-_31992708_31992780	2.05022	UCACAUU	U11494|Sik1|17691|salt inducible kinase 1	AK141817|Sik1|17691|salt inducible kinase 1	NM_010831|Sik1|17691|salt inducible kinase 1	AK172427|Sik1|17691|salt inducible kinase 1
mm9_v1_chr2_+_119500777_119500991	1.99235	UCACAUU	NM_030112|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC048535|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC022717|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC038032|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117848|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117849|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK177377|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr10_-_44178474_44178587	1.99026	UCACAUU	AK133503|Prdm1|12142|PR domain containing 1, with ZNF domain	BC129801|Prdm1|12142|PR domain containing 1, with ZNF domain	NM_007548|Prdm1|12142|PR domain containing 1, with ZNF domain	U08185|Prdm1|12142|PR domain containing 1, with ZNF domain
mm9_v1_chr3_-_89716963_89717124	1.95093	UCACAUU	X51976|Il6ra|16194|interleukin 6 receptor, alpha	X51975|Il6ra|16194|interleukin 6 receptor, alpha	BC019388|Il6ra|16194|interleukin 6 receptor, alpha	X53802|Il6ra|16194|interleukin 6 receptor, alpha	AK046337|Il6ra|16194|interleukin 6 receptor, alpha	AK082270|Il6ra|16194|interleukin 6 receptor, alpha	NM_010559|Il6ra|16194|interleukin 6 receptor, alpha	AK141197|Il6ra|16194|interleukin 6 receptor, alpha
mm9_v1_chr4_+_101927543_101927649	1.93502	UCACAUU	NM_019840|Pde4b|18578|phosphodiesterase 4B, cAMP specific	AF208023|Pde4b|18578|phosphodiesterase 4B, cAMP specific	AJ297397|Pde4b|18578|phosphodiesterase 4B, cAMP specific	AK031977|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr12_-_76697166_76697196	1.87505	UCACAUU	BC094387|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	AK220163|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	BC085149|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	NM_012024|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform
mm9_v1_chr10_+_89207730_89207982	1.8644	UCACAUU	AK141050|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	NM_029166|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AB093261|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC030383|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK033300|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC132134|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC138092|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK087280|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like
mm9_v1_chr5_-_107718503_107718613	1.86033	UCACAUU	AK165763|Tgfbr3|21814|transforming growth factor, beta receptor III	BC070428|Tgfbr3|21814|transforming growth factor, beta receptor III	AK166082|Tgfbr3|21814|transforming growth factor, beta receptor III	NM_011578|Tgfbr3|21814|transforming growth factor, beta receptor III
mm9_v1_chr11_+_29072836_29072998	1.85563	UCACAUU	NM_134034|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK090014|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK041513|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK044742|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK037253|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK165940|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK166627|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK129344|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	BC006870|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)
mm9_v1_chr10_+_5958432_5958574	1.84369	UCACAUU	AK132308|Zbtb2|381990|zinc finger and BTB domain containing 2	NM_001033466|Zbtb2|381990|zinc finger and BTB domain containing 2
mm9_v1_chr9_+_118387306_118387461	1.80478	UCACAUU	NM_001164789|Eomes|13813|eomesodermin homolog (Xenopus laevis)	NM_010136|Eomes|13813|eomesodermin homolog (Xenopus laevis)	AB031037|Eomes|13813|eomesodermin homolog (Xenopus laevis)	BC094319|Eomes|13813|eomesodermin homolog (Xenopus laevis)
mm9_v1_chr3_-_105604199_105604320	1.80109	UCACAUU	AK152504|Rap1a|109905|RAS-related protein-1a	AK030897|Rap1a|109905|RAS-related protein-1a	BC051419|Rap1a|109905|RAS-related protein-1a	NM_145541|Rap1a|109905|RAS-related protein-1a
mm9_v1_chr11_-_40568710_40568789	1.79205	UCACAUU	AK167486|Ccng1|12450|cyclin G1	AK159429|Ccng1|12450|cyclin G1	AK153392|Ccng1|12450|cyclin G1	AK167052|Ccng1|12450|cyclin G1	AK159831|Ccng1|12450|cyclin G1	L49507|Ccng1|12450|cyclin G1	Z37110|Ccng1|12450|cyclin G1	AK160411|Ccng1|12450|cyclin G1	AK128957|Ccng1|12450|cyclin G1	AK147026|Ccng1|12450|cyclin G1	AK170397|Ccng1|12450|cyclin G1	AK143114|Ccng1|12450|cyclin G1	NM_009831|Ccng1|12450|cyclin G1
mm9_v1_chr9_+_100978450_100978485	1.78638	UCACAUU	NM_001100451|Msl2|77853|male-specific lethal 2 homolog (Drosophila)	BC070432|Msl2|77853|male-specific lethal 2 homolog (Drosophila)
mm9_v1_chr18_-_57134974_57135060	1.75607	UCACAUU	BC116244|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	BC116245|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	BC127172|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	AK021208|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	AK053997|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	AK140255|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	NM_029909|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene
mm9_v1_chr6_+_124254668_124254724	1.74904	UCACAUU	NM_001170395|Cd163|93671|CD163 antigen	NM_053094|Cd163|93671|CD163 antigen	AF274883|Cd163|93671|CD163 antigen	BC144848|Cd163|93671|CD163 antigen	BC145793|Cd163|93671|CD163 antigen	DQ058616|Cd163|93671|CD163 antigen	DQ058617|Cd163|93671|CD163 antigen
mm9_v1_chr18_+_54021746_54021814	1.73816	UCACAUU	AK049379|Csnk1g3|70425|casein kinase 1, gamma 3	NM_152809|Csnk1g3|70425|casein kinase 1, gamma 3	AK080491|Csnk1g3|70425|casein kinase 1, gamma 3
mm9_v1_chr19_+_41904459_41904605	1.73008	UCACAUU	NM_008043|Frat1|14296|frequently rearranged in advanced T-cell lymphomas	AK015680|Frat1|14296|frequently rearranged in advanced T-cell lymphomas	BC140987|Frat1|14296|frequently rearranged in advanced T-cell lymphomas	U58974|Frat1|14296|frequently rearranged in advanced T-cell lymphomas
mm9_v1_chr5_-_124875921_124875965	1.7298	UCACAUU	NM_001081203|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK077133|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK165852|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)
mm9_v1_chr3_+_103718042_103718073	1.71698	UCACAUU	AB101658|Rsbn1|229675|rosbin, round spermatid basic protein 1	NM_172684|Rsbn1|229675|rosbin, round spermatid basic protein 1	BC139213|Rsbn1|229675|rosbin, round spermatid basic protein 1	BC139215|Rsbn1|229675|rosbin, round spermatid basic protein 1
mm9_v1_chr17_+_78599556_78599594	1.71292	UCACAUU	NM_015800|Crim1|50766|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm9_v1_chr16_+_44139908_44140168	1.69171	UCACAUU	NM_028108|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK167141|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK168394|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC057117|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK135658|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK156791|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK011160|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK145345|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC046283|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC004086|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK198408|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC055846|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm9_v1_chr6_+_119429620_119429803	1.67143	UCACAUU	NM_133940|Fbxl14|101358|F-box and leucine-rich repeat protein 14	AK036124|Fbxl14|101358|F-box and leucine-rich repeat protein 14	AK084506|Fbxl14|101358|F-box and leucine-rich repeat protein 14	AK155154|Fbxl14|101358|F-box and leucine-rich repeat protein 14	BC021329|Fbxl14|101358|F-box and leucine-rich repeat protein 14
mm9_v1_chr2_-_28771940_28771959	1.66734	UCACAUU	NM_019446|Barhl1|54422|BarH-like 1 (Drosophila)	AB043980|Barhl1|54422|BarH-like 1 (Drosophila)	BC055731|Barhl1|54422|BarH-like 1 (Drosophila)	NM_001164186|Barhl1|54422|BarH-like 1 (Drosophila)
mm9_v1_chr1_-_157820378_157820386	1.6644	UCACAUU	AK044664|Cep350|74081|centrosomal protein 350	NM_001039184|Cep350|74081|centrosomal protein 350
mm9_v1_chr19_-_47538898_47538933	1.63626	UCACAUU	AJ007012|Sh3pxd2a|14218|SH3 and PX domains 2A	NM_001164717|Sh3pxd2a|14218|SH3 and PX domains 2A	NM_008018|Sh3pxd2a|14218|SH3 and PX domains 2A
mm9_v1_chr1_-_57028171_57028177	1.55484	UCACAUU	AF319623|Satb2|212712|special AT-rich sequence binding protein 2	NM_139146|Satb2|212712|special AT-rich sequence binding protein 2
mm9_v1_chr14_-_70559239_70559308	1.55475	UCACAUU	BC032212|9930012K11Rik|268759|RIKEN cDNA 9930012K11 gene	BC080738|9930012K11Rik|268759|RIKEN cDNA 9930012K11 gene	AK132259|9930012K11Rik|268759|RIKEN cDNA 9930012K11 gene	NM_001004155|9930012K11Rik|268759|RIKEN cDNA 9930012K11 gene	NM_001112735|9930012K11Rik|268759|RIKEN cDNA 9930012K11 gene
mm9_v1_chr2_-_70663453_70663686	1.54322	UCACAUU	BC057369|Tlk1|228012|tousled-like kinase 1	BC051641|Tlk1|228012|tousled-like kinase 1	NM_172664|Tlk1|228012|tousled-like kinase 1
mm9_v1_chr5_+_123526279_123526440	1.54045	UCACAUU	NM_001039723|Tmem120b|330189|transmembrane protein 120B	AK132283|Tmem120b|330189|transmembrane protein 120B	AK158123|Tmem120b|330189|transmembrane protein 120B	BC022593|Tmem120b|330189|transmembrane protein 120B	BC115785|Tmem120b|330189|transmembrane protein 120B	BC118014|Tmem120b|330189|transmembrane protein 120B	AK172110|Tmem120b|330189|transmembrane protein 120B
mm9_v1_chr11_+_93747419_93747532	1.53681	UCACAUU	AK153919|Mbtd1|103537|mbt domain containing 1	BC064014|Mbtd1|103537|mbt domain containing 1	BC062907|Mbtd1|103537|mbt domain containing 1	NM_134012|Mbtd1|103537|mbt domain containing 1
mm9_v1_chr18_+_5591869_5591894	1.53665	UCACAUU	AK014114|Zeb1|21417|zinc finger E-box binding homeobox 1	U26259|Zeb1|21417|zinc finger E-box binding homeobox 1	BC139768|Zeb1|21417|zinc finger E-box binding homeobox 1	BC139769|Zeb1|21417|zinc finger E-box binding homeobox 1	D76432|Zeb1|21417|zinc finger E-box binding homeobox 1	NM_011546|Zeb1|21417|zinc finger E-box binding homeobox 1	BC090987|Zeb1|21417|zinc finger E-box binding homeobox 1	AK135371|Zeb1|21417|zinc finger E-box binding homeobox 1
mm9_v1_chr4_-_115612507_115612530	1.52963	UCACAUU	BC050912|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	AB037698|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	AF448118|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	AK141654|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	NM_001025567|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	NM_130865|Dmbx1|140477|diencephalon/mesencephalon homeobox 1
mm9_v1_chr4_-_133523750_133523927	1.49644	UCACAUU	X12944|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC084680|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC090837|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC092060|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC083085|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC090836|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC103792|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK078413|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK002374|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK151383|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK152857|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK153881|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK169050|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK146285|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK146999|Hmgn2|15331|high mobility group nucleosomal binding domain 2	NM_016957|Hmgn2|15331|high mobility group nucleosomal binding domain 2
mm9_v1_chr10_-_62801726_62801784	1.49593	UCACAUU	AK140330|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	BC152314|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159590|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AY377984|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AF214646|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_019812|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AK144203|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159589|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)
mm9_v1_chr4_+_105988790_105988840	1.46237	UCACAUU	NM_183225|Usp24|329908|ubiquitin specific peptidase 24	AK045043|Usp24|329908|ubiquitin specific peptidase 24
mm9_v1_chrX_+_21292025_21292267	1.46002	UCACAUU	NM_020049|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	AF161714|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	AF320226|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	AK018553|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	BC129908|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	BC129909|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	AB033285|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14
mm9_v1_chr11_-_50105794_50105864	1.45341	UCACAUU	AY442299|Maml1|103806|mastermind like 1 (Drosophila)	AK129088|Maml1|103806|mastermind like 1 (Drosophila)	NM_175334|Maml1|103806|mastermind like 1 (Drosophila)
mm9_v1_chr1_+_191552133_191552202	1.45137	UCACAUU	AK037646|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	NM_008976|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	AK086524|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	AK028783|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14
mm9_v1_chr8_-_108734817_108734855	1.4117	UCACAUU	BC054118|Slc7a6os|66432|solute carrier family 7, member 6 opposite strand	AK010254|Slc7a6os|66432|solute carrier family 7, member 6 opposite strand	AK171401|Slc7a6os|66432|solute carrier family 7, member 6 opposite strand	AK146733|Slc7a6os|66432|solute carrier family 7, member 6 opposite strand	AK171156|Slc7a6os|66432|solute carrier family 7, member 6 opposite strand	NM_001007567|Slc7a6os|66432|solute carrier family 7, member 6 opposite strand	AK171806|Slc7a6os|66432|solute carrier family 7, member 6 opposite strand
mm9_v1_chr13_-_46060325_46060353	1.40286	UCACAUU	BC058178|Atxn1|20238|ataxin 1	AK048268|Atxn1|20238|ataxin 1	NM_009124|Atxn1|20238|ataxin 1	AK169931|Atxn1|20238|ataxin 1
mm9_v1_chr3_+_3508029_3508207	1.4022	UCACAUU	AK143816|Hnf4g|30942|hepatocyte nuclear factor 4, gamma	NM_013920|Hnf4g|30942|hepatocyte nuclear factor 4, gamma	AJ242626|Hnf4g|30942|hepatocyte nuclear factor 4, gamma	BC125519|Hnf4g|30942|hepatocyte nuclear factor 4, gamma
mm9_v1_chr10_-_116018526_116018566	1.39226	UCACAUU	AK149767|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	BC043133|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	AK167834|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	AK202363|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	AK172132|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	BC063105|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	AK078121|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	AK011231|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	BC065171|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	NM_001037846|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	NM_001037847|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	NM_001037848|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	NM_028082|Cnot2|72068|CCR4-NOT transcription complex, subunit 2
mm9_v1_chr8_-_26212242_26212282	1.33334	UCACAUU	AK042324|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	AK078212|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	NM_031257|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
mm9_v1_chr13_+_56804370_56804503	1.32199	UCACAUU	NM_008541|Smad5|17129|MAD homolog 5 (Drosophila)	AK018077|Smad5|17129|MAD homolog 5 (Drosophila)	AF063006|Smad5|17129|MAD homolog 5 (Drosophila)	NM_001164041|Smad5|17129|MAD homolog 5 (Drosophila)	U58993|Smad5|17129|MAD homolog 5 (Drosophila)	AK139765|Smad5|17129|MAD homolog 5 (Drosophila)	BC048233|Smad5|17129|MAD homolog 5 (Drosophila)	BC050001|Smad5|17129|MAD homolog 5 (Drosophila)
mm9_v1_chr3_+_61168428_61168660	1.30782	UCACAUU	NM_028712|Rap2b|74012|RAP2B, member of RAS oncogene family	AK045030|Rap2b|74012|RAP2B, member of RAS oncogene family	AK014462|Rap2b|74012|RAP2B, member of RAS oncogene family	AK042941|Rap2b|74012|RAP2B, member of RAS oncogene family	AK163186|Rap2b|74012|RAP2B, member of RAS oncogene family	AK150187|Rap2b|74012|RAP2B, member of RAS oncogene family	BC046528|Rap2b|74012|RAP2B, member of RAS oncogene family
mm9_v1_chr15_+_78813475_78813522	1.3016	UCACAUU	NM_001024716|Triobp|110253|TRIO and F-actin binding protein	BC053329|Triobp|110253|TRIO and F-actin binding protein	AK085512|Triobp|110253|TRIO and F-actin binding protein
mm9_v1_chr17_-_13185043_13185130	1.29865	UCACAUU	BC046416|Wtap|60532|Wilms' tumour 1-associating protein	BC047338|Wtap|60532|Wilms' tumour 1-associating protein	BC093504|Wtap|60532|Wilms' tumour 1-associating protein	NM_001113532|Wtap|60532|Wilms' tumour 1-associating protein	NM_001113533|Wtap|60532|Wilms' tumour 1-associating protein
mm9_v1_chr3_+_40439675_40439741	1.29021	UCACAUU	NM_175515|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	AK035092|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	BC125523|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	BC132387|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)
mm9_v1_chr10_-_4752710_4752812	1.28767	UCACAUU	AK054222|Myct1|68632|myc target 1	AK030706|Myct1|68632|myc target 1	AK142963|Myct1|68632|myc target 1	BC096559|Myct1|68632|myc target 1	AY090114|Myct1|68632|myc target 1	AK003845|Myct1|68632|myc target 1	NM_026793|Myct1|68632|myc target 1
mm9_v1_chr18_-_82862111_82862127	1.28123	UCACAUU	BC138187|Zfp236|329002|zinc finger protein 236	BC145179|Zfp236|329002|zinc finger protein 236	BC145180|Zfp236|329002|zinc finger protein 236	NM_177832|Zfp236|329002|zinc finger protein 236
mm9_v1_chr2_+_32612744_32612905	1.26775	UCACAUU	BC003466|Tor2a|30933|torsin family 2, member A	BC024469|Tor2a|30933|torsin family 2, member A	NM_152800|Tor2a|30933|torsin family 2, member A	AK170979|Tor2a|30933|torsin family 2, member A	AK171247|Tor2a|30933|torsin family 2, member A	AK162719|Tor2a|30933|torsin family 2, member A	AK019246|Tor2a|30933|torsin family 2, member A	AK185253|Tor2a|30933|torsin family 2, member A	AK189495|Tor2a|30933|torsin family 2, member A
mm9_v1_chr7_+_97278722_97279067	1.26765	UCACAUU	AK170373|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC025566|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	NM_146194|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC057683|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC021491|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK144960|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC023843|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK220291|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC011470|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK162360|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AY206701|Picalm|233489|phosphatidylinositol binding clathrin assembly protein
mm9_v1_chr3_+_89876566_89876658	1.26409	UCACAUU	U04541|Tpm3|59069|tropomyosin 3, gamma	BC029186|Tpm3|59069|tropomyosin 3, gamma	NM_022314|Tpm3|59069|tropomyosin 3, gamma	AF317223|Tpm3|59069|tropomyosin 3, gamma
mm9_v1_chr12_+_3806955_3807159	1.26268	UCACAUU	NM_007872|Dnmt3a|13435|DNA methyltransferase 3A	AF503867|Dnmt3a|13435|DNA methyltransferase 3A	AK090132|Dnmt3a|13435|DNA methyltransferase 3A	AK147676|Dnmt3a|13435|DNA methyltransferase 3A	BC007466|Dnmt3a|13435|DNA methyltransferase 3A	AF068625|Dnmt3a|13435|DNA methyltransferase 3A	AK147263|Dnmt3a|13435|DNA methyltransferase 3A	AK147627|Dnmt3a|13435|DNA methyltransferase 3A	AK147642|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr11_-_74981653_74981653	1.24362	UCACAUU	NM_001098203|Hic1|15248|hypermethylated in cancer 1
mm9_v1_chr17_-_71202829_71202871	1.24194	UCACAUU	AK160193|Tgif1|21815|TGFB-induced factor homeobox 1	NM_001164074|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chrX_+_133584130_133584209	1.2167	UCACAUU	AK154624|Fam199x|245622|family with sequence similarity 199, X-linked	NM_146261|Fam199x|245622|family with sequence similarity 199, X-linked	BC031748|Fam199x|245622|family with sequence similarity 199, X-linked	AK039695|Fam199x|245622|family with sequence similarity 199, X-linked
mm9_v1_chr1_-_64784316_64784324	1.21555	UCACAUU	AK039402|Fzd5|14367|frizzled homolog 5 (Drosophila)	NM_001042659|Fzd5|14367|frizzled homolog 5 (Drosophila)	NM_022721|Fzd5|14367|frizzled homolog 5 (Drosophila)	AK030111|Fzd5|14367|frizzled homolog 5 (Drosophila)
mm9_v1_chr5_-_33196860_33196908	1.20862	UCACAUU	AK134346|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene	NM_194340|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene
mm9_v1_chr11_-_77421308_77421363	1.1828	UCACAUU	AK143530|Taok1|216965|TAO kinase 1	NM_144825|Taok1|216965|TAO kinase 1
mm9_v1_chr2_+_128644032_128644119	1.1744	UCACAUU	NM_028248|Tmem87b|72477|transmembrane protein 87B	AK050203|Tmem87b|72477|transmembrane protein 87B	AK166991|Tmem87b|72477|transmembrane protein 87B	AK164504|Tmem87b|72477|transmembrane protein 87B	AK171811|Tmem87b|72477|transmembrane protein 87B	AK172611|Tmem87b|72477|transmembrane protein 87B	BC031488|Tmem87b|72477|transmembrane protein 87B	AK011959|Tmem87b|72477|transmembrane protein 87B
mm9_v1_chr4_-_117852550_117852665	1.16186	UCACAUU	BC028866|Kdm4a|230674|lysine (K)-specific demethylase 4A	AK145947|Kdm4a|230674|lysine (K)-specific demethylase 4A	AK054095|Kdm4a|230674|lysine (K)-specific demethylase 4A	AK145066|Kdm4a|230674|lysine (K)-specific demethylase 4A	NM_001161823|Kdm4a|230674|lysine (K)-specific demethylase 4A	NM_172382|Kdm4a|230674|lysine (K)-specific demethylase 4A
mm9_v1_chr16_-_45654180_45654230	1.15845	UCACAUU	AK078878|BC016579|212998|cDNA sequence, BC016579	BC016579|BC016579|212998|cDNA sequence, BC016579	NM_145389|BC016579|212998|cDNA sequence, BC016579
mm9_v1_chr18_+_32322742_32322855	1.14862	UCACAUU	AK036364|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	NM_011946|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	AK143367|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	AK050667|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	U43186|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2
mm9_v1_chr1_-_80336894_80337145	1.13596	UCACAUU	AF129738|Cul3|26554|cullin 3	NM_016716|Cul3|26554|cullin 3	BC027304|Cul3|26554|cullin 3
mm9_v1_chr15_-_73015345_73015397	1.1344	UCACAUU	NM_153178|Eif2c2|239528|eukaryotic translation initiation factor 2C, 2
mm9_v1_chr7_+_88716050_88716233	1.1259	UCACAUU	AK162084|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules	AK080911|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules	AK140311|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules	BC042749|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules	AK220273|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules	NM_001004185|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules
mm9_v1_chr10_+_11001384_11001384	1.12273	UCACAUU	AK006369|Fbxo30|71865|F-box protein 30	NM_001168297|Fbxo30|71865|F-box protein 30
mm9_v1_chr7_-_123174560_123174560	1.1146	UCACAUU	AK030713|Sox6|20679|SRY-box containing gene 6	NM_001025560|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr17_-_63849928_63849928	1.11341	UCACAUU	NM_015794|Fbxl17|50758|F-box and leucine-rich repeat protein 17
mm9_v1_chr13_+_56805028_56805028	1.10406	UCACAUU	AK082997|Smad5|17129|MAD homolog 5 (Drosophila)	NM_001164042|Smad5|17129|MAD homolog 5 (Drosophila)
mm9_v1_chr3_+_51219882_51219968	1.08717	UCACAUU	NM_053089|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm9_v1_chr19_+_40969176_40969231	1.07529	UCACAUU	AK087532|E130314M14Rik|449522|RIKEN cDNA E130314M14 gene	AK041506|Zfp518a|72672|zinc finger protein 518A	NM_028319|Zfp518a|72672|zinc finger protein 518A
mm9_v1_chr10_+_69559860_69560052	1.07199	UCACAUU	NM_001111121|Ccdc6|76551|coiled-coil domain containing 6
mm9_v1_chr3_-_86352170_86352368	1.06922	UCACAUU	BC046628|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK053645|Mab21l2|23937|mab-21-like 2 (C. elegans)	NM_011839|Mab21l2|23937|mab-21-like 2 (C. elegans)	BC058730|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK144373|Mab21l2|23937|mab-21-like 2 (C. elegans)
mm9_v1_chr13_+_75844906_75844941	1.06805	UCACAUU	NM_138953|Ell2|192657|elongation factor RNA polymerase II 2
mm9_v1_chr1_+_179374783_179374796	1.05276	UCACAUU	BC089333|Zfp238|30928|zinc finger protein 238	NM_001012330|Zfp238|30928|zinc finger protein 238
mm9_v1_chr9_-_48644030_48644051	1.04056	UCACAUU	AK040211|Zbtb16|235320|zinc finger and BTB domain containing 16	AK142947|Zbtb16|235320|zinc finger and BTB domain containing 16	NM_001033324|Zbtb16|235320|zinc finger and BTB domain containing 16
mm9_v1_chr2_-_105239368_105239475	1.03861	UCACAUU	BC049108|Rcn1|19672|reticulocalbin 1	AK159973|Rcn1|19672|reticulocalbin 1	AK017494|Rcn1|19672|reticulocalbin 1	D13003|Rcn1|19672|reticulocalbin 1	AK133971|Rcn1|19672|reticulocalbin 1	NM_009037|Rcn1|19672|reticulocalbin 1
mm9_v1_chr17_-_71201055_71201077	1.01883	UCACAUU	BC012700|Tgif1|21815|TGFB-induced factor homeobox 1	NM_001164075|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chrX_-_140261954_140261960	1.0131	UCACAUU	NM_007603|Capn6|12338|calpain 6	AK145116|Capn6|12338|calpain 6
mm9_v1_chr14_+_65977510_65977519	0.998626	UCACAUU	AK155538|Zfp395|380912|zinc finger protein 395	NM_199029|Zfp395|380912|zinc finger protein 395
mm9_v1_chr3_-_68930928_68931049	0.986965	UCACAUU	BC052162|Kpna4|16649|karyopherin (importin) alpha 4	NM_008467|Kpna4|16649|karyopherin (importin) alpha 4	AK147920|Kpna4|16649|karyopherin (importin) alpha 4
mm9_v1_chr15_-_98701613_98701613	0.972678	UCACAUU	NM_001033276|Mll2|381022|myeloid/lymphoid or mixed-lineage leukemia 2
mm9_v1_chr17_-_71200462_71200609	0.959095	UCACAUU	BC005724|Tgif1|21815|TGFB-induced factor homeobox 1	AK008909|Tgif1|21815|TGFB-induced factor homeobox 1	NM_009372|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chr10_+_92623587_92623703	0.945017	UCACAUU	AK078325|Cdk17|237459|cyclin-dependent kinase 17	NM_146239|Cdk17|237459|cyclin-dependent kinase 17	BC064815|Cdk17|237459|cyclin-dependent kinase 17
mm9_v1_chr2_+_158492468_158492468	0.941952	UCACAUU	NM_153089|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm9_v1_chr9_-_65917524_65917537	0.933812	UCACAUU	BC138950|Snx22|382083|sorting nexin 22	BC138951|Snx22|382083|sorting nexin 22	AK032028|Snx22|382083|sorting nexin 22	NM_001025612|Snx22|382083|sorting nexin 22
mm9_v1_chr12_-_105990160_105990320	0.92695	UCACAUU	BC019805|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)	AF430845|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)	NM_148948|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)
mm9_v1_chr17_-_71196116_71196116	0.919984	UCACAUU	NM_001164077|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chr2_+_158492854_158492905	0.914228	UCACAUU	AK044453|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	NM_001159662|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC054764|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC057542|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AF423761|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AK042123|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm9_v1_chr10_+_110601745_110601988	0.911375	UCACAUU	AK037158|Osbpl8|237542|oxysterol binding protein-like 8	AK050244|Osbpl8|237542|oxysterol binding protein-like 8	NM_001003717|Osbpl8|237542|oxysterol binding protein-like 8	NM_175489|Osbpl8|237542|oxysterol binding protein-like 8
mm9_v1_chr15_-_56526052_56526100	0.905869	UCACAUU	U52524|Has2|15117|hyaluronan synthase 2	BC080281|Has2|15117|hyaluronan synthase 2	U69695|Has2|15117|hyaluronan synthase 2	AK045020|Has2|15117|hyaluronan synthase 2	AK079729|Has2|15117|hyaluronan synthase 2	NM_008216|Has2|15117|hyaluronan synthase 2
mm9_v1_chr2_+_74529947_74530004	0.899468	UCACAUU	AK134330|Hoxd10|15430|homeobox D10	BC048690|Hoxd10|15430|homeobox D10	NM_013554|Hoxd10|15430|homeobox D10
mm9_v1_chr7_-_128850659_128850766	0.890347	UCACAUU	NM_001033173|Usp31|76179|ubiquitin specific peptidase 31
mm9_v1_chr11_-_106649652_106649810	0.878577	UCACAUU	BC108369|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK203495|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC129873|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC129874|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC086320|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC046554|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	X65627|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC062916|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK044792|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK076018|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK088887|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK129022|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK135173|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK166045|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	NM_007840|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr8_+_77517536_77517607	0.854243	UCACAUU	AK156670|Hmgxb4|70823|HMG box domain containing 4	AK014640|Hmgxb4|70823|HMG box domain containing 4	BC048188|Hmgxb4|70823|HMG box domain containing 4	BC049800|Hmgxb4|70823|HMG box domain containing 4	NM_178017|Hmgxb4|70823|HMG box domain containing 4	BC023721|Hmgxb4|70823|HMG box domain containing 4
mm9_v1_chr2_-_44968728_44968798	0.850356	UCACAUU	AJ535782|Zeb2|24136|zinc finger E-box binding homeobox 2	AK031541|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535780|Zeb2|24136|zinc finger E-box binding homeobox 2	NM_015753|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr10_-_117283020_117283117	0.849583	UCACAUU	BC052480|Rap1b|215449|RAS related protein 1b	NM_024457|Rap1b|215449|RAS related protein 1b	AK163242|Rap1b|215449|RAS related protein 1b
mm9_v1_chr3_+_58219610_58219610	0.844287	UCACAUU	NM_001081229|Tsc22d2|72033|TSC22 domain family, member 2
mm9_v1_chr3_+_58810899_58810899	0.844214	UCACAUU	AK047743|Med12l|329650|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like	NM_177855|Med12l|329650|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like
mm9_v1_chr17_-_71199129_71199153	0.843845	UCACAUU	NM_001164076|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chr1_+_145487825_145487990	0.842277	UCACAUU	AK036141|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	NM_020025|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK034371|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK083168|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK080106|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	BC046322|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
mm9_v1_chr17_-_25152174_25152174	0.842034	UCACAUU	AK147411|Cramp1l|57354|Crm, cramped-like (Drosophila)	AK147449|Cramp1l|57354|Crm, cramped-like (Drosophila)	NM_020608|Cramp1l|57354|Crm, cramped-like (Drosophila)
mm9_v1_chr10_+_127814144_127814228	0.821431	UCACAUU	AK144017|Ankrd52|237615|ankyrin repeat domain 52	AK032429|Ankrd52|237615|ankyrin repeat domain 52	NM_172790|Ankrd52|237615|ankyrin repeat domain 52	AK090124|Ankrd52|237615|ankyrin repeat domain 52	AK035533|Ankrd52|237615|ankyrin repeat domain 52	BC117907|Ankrd52|237615|ankyrin repeat domain 52	BC117908|Ankrd52|237615|ankyrin repeat domain 52
mm9_v1_chr13_-_8870231_8870293	0.818292	UCACAUU	AK129254|Wdr37|207615|WD repeat domain 37	AK032582|Wdr37|207615|WD repeat domain 37	AK146209|Wdr37|207615|WD repeat domain 37	AK014128|Wdr37|207615|WD repeat domain 37	AK044740|Wdr37|207615|WD repeat domain 37	AK036203|Wdr37|207615|WD repeat domain 37	NM_001039389|Wdr37|207615|WD repeat domain 37	NM_172445|Wdr37|207615|WD repeat domain 37
mm9_v1_chr19_+_36908682_36908797	0.814222	UCACAUU	NM_001163635|Tnks2|74493|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
mm9_v1_chr10_-_92773778_92773948	0.811429	UCACAUU	Z32815|Elk3|13713|ELK3, member of ETS oncogene family	L19953|Elk3|13713|ELK3, member of ETS oncogene family	BC005686|Elk3|13713|ELK3, member of ETS oncogene family	NM_013508|Elk3|13713|ELK3, member of ETS oncogene family
mm9_v1_chr5_+_32761332_32761346	0.811134	UCACAUU	NM_172707|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK166416|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr13_-_53024983_53025057	0.806217	UCACAUU	BC026525|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK134886|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK019978|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK003219|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK003929|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK169661|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	BC049597|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	NM_016709|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK147855|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase
mm9_v1_chr3_+_41368801_41368825	0.805127	UCACAUU	NM_001130186|Phf17|269424|PHD finger protein 17
mm9_v1_chr11_-_100981015_100981199	0.803552	UCACAUU	AK194930|Fam134c|67998|family with sequence similarity 134, member C	AK016648|Fam134c|67998|family with sequence similarity 134, member C	AK160000|Fam134c|67998|family with sequence similarity 134, member C	BC016089|Fam134c|67998|family with sequence similarity 134, member C	AK151685|Fam134c|67998|family with sequence similarity 134, member C	AK004979|Fam134c|67998|family with sequence similarity 134, member C	NM_026501|Fam134c|67998|family with sequence similarity 134, member C	AK163482|Fam134c|67998|family with sequence similarity 134, member C	AK004960|Fam134c|67998|family with sequence similarity 134, member C	AK051025|Fam134c|67998|family with sequence similarity 134, member C	NM_028933|Fam134c|67998|family with sequence similarity 134, member C
mm9_v1_chr2_+_139503913_139503986	0.796445	UCACAUU	AK077398|Ism1|319909|isthmin 1 homolog (zebrafish)	NM_001126490|Ism1|319909|isthmin 1 homolog (zebrafish)
mm9_v1_chr4_-_10934608_10934850	0.791814	UCACAUU	BC016134|Plekhf2|71801|pleckstrin homology domain containing, family F (with FYVE domain) member 2	BC039276|Plekhf2|71801|pleckstrin homology domain containing, family F (with FYVE domain) member 2	AK154634|Plekhf2|71801|pleckstrin homology domain containing, family F (with FYVE domain) member 2	AK033666|Plekhf2|71801|pleckstrin homology domain containing, family F (with FYVE domain) member 2	NM_175175|Plekhf2|71801|pleckstrin homology domain containing, family F (with FYVE domain) member 2
mm9_v1_chr10_-_13043959_13044096	0.78533	UCACAUU	BC130264|Phactr2|215789|phosphatase and actin regulator 2	AK142930|Phactr2|215789|phosphatase and actin regulator 2	NM_001033257|Phactr2|215789|phosphatase and actin regulator 2	NM_001195096|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr3_+_41367672_41367775	0.777482	UCACAUU	NM_001130185|Phf17|269424|PHD finger protein 17
mm9_v1_chr13_+_49436905_49436989	0.752909	UCACAUU	NM_001039179|Bicd2|76895|bicaudal D homolog 2 (Drosophila)	NM_001039180|Bicd2|76895|bicaudal D homolog 2 (Drosophila)	NM_029791|Bicd2|76895|bicaudal D homolog 2 (Drosophila)	AK122348|Bicd2|76895|bicaudal D homolog 2 (Drosophila)	AK171300|Bicd2|76895|bicaudal D homolog 2 (Drosophila)	AK156407|Bicd2|76895|bicaudal D homolog 2 (Drosophila)	AJ250106|Bicd2|76895|bicaudal D homolog 2 (Drosophila)	BC032198|Bicd2|76895|bicaudal D homolog 2 (Drosophila)
mm9_v1_chr11_+_67013553_67013615	0.743439	UCACAUU	DQ021871|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult	AK041122|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult	AY963800|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult	BC108329|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult	NM_030679|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult
mm9_v1_chr2_+_129626252_129626487	0.732645	UCACAUU	NM_001038635|Stk35|67333|serine/threonine kinase 35	NM_183262|Stk35|67333|serine/threonine kinase 35	BC138904|Stk35|67333|serine/threonine kinase 35	BC138905|Stk35|67333|serine/threonine kinase 35	AK165988|Stk35|67333|serine/threonine kinase 35	AK006778|Stk35|67333|serine/threonine kinase 35
mm9_v1_chr11_+_96179580_96179580	0.727834	UCACAUU	BC095947|Hoxb4|15412|homeobox B4	NM_010459|Hoxb4|15412|homeobox B4
mm9_v1_chr12_+_57796625_57796715	0.725398	UCACAUU	AK132404|Pax9|18511|paired box gene 9	NM_011041|Pax9|18511|paired box gene 9	AK034985|Pax9|18511|paired box gene 9	X84000|Pax9|18511|paired box gene 9	BC005794|Pax9|18511|paired box gene 9	BC006930|Pax9|18511|paired box gene 9
mm9_v1_chr3_+_41367304_41367502	0.724219	UCACAUU	NM_172303|Phf17|269424|PHD finger protein 17	BC020316|Phf17|269424|PHD finger protein 17	AK147466|Phf17|269424|PHD finger protein 17
mm9_v1_chr9_+_98856025_98856025	0.712652	UCACAUU	BC137811|Foxl2|26927|forkhead box L2	BC137812|Foxl2|26927|forkhead box L2	NM_012020|Foxl2|26927|forkhead box L2
mm9_v1_chr11_-_84684177_84684284	0.70961	UCACAUU	AB064543|Ggnbp2|217039|gametogenetin binding protein 2	AY633741|Ggnbp2|217039|gametogenetin binding protein 2	NM_153144|Ggnbp2|217039|gametogenetin binding protein 2	AK162027|Ggnbp2|217039|gametogenetin binding protein 2
mm9_v1_chr10_+_11001072_11001225	0.701258	UCACAUU	NM_027968|Fbxo30|71865|F-box protein 30	AK083479|Fbxo30|71865|F-box protein 30	AK135274|Fbxo30|71865|F-box protein 30
mm9_v1_chr11_+_72503487_72503520	0.696361	UCACAUU	BC139231|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	BC145583|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	NM_009671|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB011370|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB098329|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AK134008|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1
mm9_v1_chr4_+_13678443_13678575	0.688983	UCACAUU	NM_001111027|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr2_-_34769479_34769559	0.684431	UCACAUU	BC027776|Phf19|74016|PHD finger protein 19	AK014380|Phf19|74016|PHD finger protein 19	NM_028716|Phf19|74016|PHD finger protein 19	AK014030|Phf19|74016|PHD finger protein 19
mm9_v1_chr6_-_72389491_72389552	0.682277	UCACAUU	BC003451|Mat2a|232087|methionine adenosyltransferase II, alpha	AB070266|Mat2a|232087|methionine adenosyltransferase II, alpha	BC058360|Mat2a|232087|methionine adenosyltransferase II, alpha	AK145407|Mat2a|232087|methionine adenosyltransferase II, alpha	AK052764|Mat2a|232087|methionine adenosyltransferase II, alpha	AK133960|Mat2a|232087|methionine adenosyltransferase II, alpha	AK144189|Mat2a|232087|methionine adenosyltransferase II, alpha	AK150040|Mat2a|232087|methionine adenosyltransferase II, alpha	AK151281|Mat2a|232087|methionine adenosyltransferase II, alpha	AK160869|Mat2a|232087|methionine adenosyltransferase II, alpha	AK161852|Mat2a|232087|methionine adenosyltransferase II, alpha	AK164137|Mat2a|232087|methionine adenosyltransferase II, alpha	AK166671|Mat2a|232087|methionine adenosyltransferase II, alpha	AK168155|Mat2a|232087|methionine adenosyltransferase II, alpha	AK169705|Mat2a|232087|methionine adenosyltransferase II, alpha	AK034757|Mat2a|232087|methionine adenosyltransferase II, alpha	NM_145569|Mat2a|232087|methionine adenosyltransferase II, alpha
mm9_v1_chr13_+_83643032_83643032	0.667995	UCACAUU	NM_001170537|Mef2c|17260|myocyte enhancer factor 2C	NM_025282|Mef2c|17260|myocyte enhancer factor 2C
mm9_v1_chr11_-_102157904_102158007	0.653242	UCACAUU	NM_001098836|Atxn7l3|217218|ataxin 7-like 3	NM_001098837|Atxn7l3|217218|ataxin 7-like 3	AK090368|Atxn7l3|217218|ataxin 7-like 3
mm9_v1_chr2_-_63936044_63936094	0.646954	UCACAUU	AF263913|Fign|60344|fidgetin	AK163474|Fign|60344|fidgetin	AK164536|Fign|60344|fidgetin	NM_021716|Fign|60344|fidgetin	AK143787|Fign|60344|fidgetin	BC059266|Fign|60344|fidgetin
mm9_v1_chr4_+_124479785_124479853	0.646715	UCACAUU	AK150295|Mtf1|17764|metal response element binding transcription factor 1	NM_008636|Mtf1|17764|metal response element binding transcription factor 1	AK030284|Mtf1|17764|metal response element binding transcription factor 1	AK012676|Mtf1|17764|metal response element binding transcription factor 1	X71327|Mtf1|17764|metal response element binding transcription factor 1	BC017679|Mtf1|17764|metal response element binding transcription factor 1
mm9_v1_chr8_-_87211726_87211763	0.645108	UCACAUU	BC048157|Nacc1|66830|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	AK012935|Nacc1|66830|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	BC052706|Nacc1|66830|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	BC054800|Nacc1|66830|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	NM_025788|Nacc1|66830|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
mm9_v1_chr7_-_142129892_142130112	0.640299	UCACAUU	BC158077|Fam196a|627214|family with sequence similarity 196, member A	BC158080|Fam196a|627214|family with sequence similarity 196, member A	AK046823|Fam196a|627214|family with sequence similarity 196, member A	AK046846|Fam196a|627214|family with sequence similarity 196, member A	AK140373|Fam196a|627214|family with sequence similarity 196, member A	NM_001143802|Fam196a|627214|family with sequence similarity 196, member A
mm9_v1_chr2_+_14151018_14151088	0.6387	UCACAUU	NM_008625|Mrc1|17533|mannose receptor, C type 1	Z11974|Mrc1|17533|mannose receptor, C type 1	BC141338|Mrc1|17533|mannose receptor, C type 1
mm9_v1_chr13_-_112280018_112280262	0.63323	UCACAUU	BC067075|Gpbp1|73274|GC-rich promoter binding protein 1	AK136894|Gpbp1|73274|GC-rich promoter binding protein 1	AK161928|Gpbp1|73274|GC-rich promoter binding protein 1	BC094888|Gpbp1|73274|GC-rich promoter binding protein 1	AK169406|Gpbp1|73274|GC-rich promoter binding protein 1	AY382529|Gpbp1|73274|GC-rich promoter binding protein 1	AK082704|Gpbp1|73274|GC-rich promoter binding protein 1	BC096442|Gpbp1|73274|GC-rich promoter binding protein 1	BC076635|Gpbp1|73274|GC-rich promoter binding protein 1	AK163370|Gpbp1|73274|GC-rich promoter binding protein 1	AK135728|Gpbp1|73274|GC-rich promoter binding protein 1	AK145318|Gpbp1|73274|GC-rich promoter binding protein 1	AK163390|Gpbp1|73274|GC-rich promoter binding protein 1	NM_001122963|Gpbp1|73274|GC-rich promoter binding protein 1	NM_028487|Gpbp1|73274|GC-rich promoter binding protein 1	AK006608|Gpbp1|73274|GC-rich promoter binding protein 1
mm9_v1_chr11_-_5344795_5344912	0.622754	UCACAUU	AK163639|Znrf3|407821|zinc and ring finger 3	NM_001080924|Znrf3|407821|zinc and ring finger 3
mm9_v1_chrX_+_98469429_98469601	0.61653	UCACAUU	BC090654|Med12|59024|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)	NM_021521|Med12|59024|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)
mm9_v1_chr7_-_107007359_107007399	0.607105	UCACAUU	AK134578|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)	NM_025668|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)	AK017504|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)	AK168173|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm9_v1_chr13_+_41701584_41701584	0.597473	UCACAUU	NM_001163572|Tmem170b|621976|transmembrane protein 170B
mm9_v1_chr9_+_69837253_69837421	0.595244	UCACAUU	AK169609|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK054288|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	NM_016787|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK159745|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK014659|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK161116|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	BC012670|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AF035207|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2
mm9_v1_chr17_+_83614611_83614641	0.594046	UCACAUU	NM_134117|Pkdcc|106522|protein kinase domain containing, cytoplasmic	AB381893|Pkdcc|106522|protein kinase domain containing, cytoplasmic	AB436780|Pkdcc|106522|protein kinase domain containing, cytoplasmic	BC086639|Pkdcc|106522|protein kinase domain containing, cytoplasmic
mm9_v1_chr7_+_19511230_19511244	0.584133	UCACAUU	NM_001029877|Nova2|384569|neuro-oncological ventral antigen 2
mm9_v1_chr1_-_180267913_180267920	0.58142	UCACAUU	AK165844|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	NM_016805|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK089058|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK145682|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK159614|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK167200|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK145499|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK162264|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr13_+_93381086_93381215	0.5734	UCACAUU	AK165334|Serinc5|218442|serine incorporator 5	BC049189|Serinc5|218442|serine incorporator 5	BC062131|Serinc5|218442|serine incorporator 5	NM_172588|Serinc5|218442|serine incorporator 5	AK037699|Serinc5|218442|serine incorporator 5	AK163675|Serinc5|218442|serine incorporator 5	AB029501|Serinc5|218442|serine incorporator 5
mm9_v1_chr11_+_86298106_86298244	0.568939	UCACAUU	AK036401|Rnft1|76892|ring finger protein, transmembrane 1	NM_029788|Rnft1|76892|ring finger protein, transmembrane 1	AK171077|Rnft1|76892|ring finger protein, transmembrane 1	AK153293|Rnft1|76892|ring finger protein, transmembrane 1	BC050796|Rnft1|76892|ring finger protein, transmembrane 1	AK002624|Rnft1|76892|ring finger protein, transmembrane 1
mm9_v1_chr11_-_18918923_18918971	0.560857	UCACAUU	AK032947|Meis1|17268|Meis homeobox 1	AK049720|Meis1|17268|Meis homeobox 1	BC023689|Meis1|17268|Meis homeobox 1	AK168684|Meis1|17268|Meis homeobox 1	AK134321|Meis1|17268|Meis homeobox 1	AK140748|Meis1|17268|Meis homeobox 1	NM_001193271|Meis1|17268|Meis homeobox 1	NM_010789|Meis1|17268|Meis homeobox 1
mm9_v1_chr4_+_109015660_109015680	0.558734	UCACAUU	NM_001159964|Eps15|13858|epidermal growth factor receptor pathway substrate 15	AK083176|Eps15|13858|epidermal growth factor receptor pathway substrate 15
mm9_v1_chr15_-_58913543_58913652	0.549101	UCACAUU	BC024131|Mtss1|211401|metastasis suppressor 1	AK083756|Mtss1|211401|metastasis suppressor 1	AK046628|Mtss1|211401|metastasis suppressor 1	AK129139|Mtss1|211401|metastasis suppressor 1	NM_001146180|Mtss1|211401|metastasis suppressor 1	NM_144800|Mtss1|211401|metastasis suppressor 1
mm9_v1_chr19_-_44181897_44181978	0.545721	UCACAUU	AK035326|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	U12473|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK150039|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK165275|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK018671|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK155328|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	BC018243|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK155393|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK164236|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	NM_001162410|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	NM_007700|Chuk|12675|conserved helix-loop-helix ubiquitous kinase
mm9_v1_chr8_+_26750755_26750755	0.529564	UCACAUU	NM_001081269|Whsc1l1|234135|Wolf-Hirschhorn syndrome candidate 1-like 1 (human)
mm9_v1_chr17_-_47970167_47970209	0.52287	UCACAUU	U57822|Mdfi|17240|MyoD family inhibitor	BC006018|Mdfi|17240|MyoD family inhibitor	NM_010783|Mdfi|17240|MyoD family inhibitor	U57821|Mdfi|17240|MyoD family inhibitor
mm9_v1_chr6_+_95067873_95067899	0.520718	UCACAUU	AK142080|Kbtbd8|243574|kelch repeat and BTB (POZ) domain containing 8	NM_001008785|Kbtbd8|243574|kelch repeat and BTB (POZ) domain containing 8	NM_001102670|Kbtbd8|243574|kelch repeat and BTB (POZ) domain containing 8
mm9_v1_chr10_-_13108775_13108775	0.520436	UCACAUU	AK139466|Phactr2|215789|phosphatase and actin regulator 2	NM_001195066|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr1_-_157589156_157589156	0.509197	UCACAUU	BC049834|Lhx4|16872|LIM homeobox protein 4	NM_010712|Lhx4|16872|LIM homeobox protein 4
mm9_v1_chr16_+_91547266_91547421	0.499557	UCACAUU	AK137165|Ifngr2|15980|interferon gamma receptor 2	AK169907|Ifngr2|15980|interferon gamma receptor 2	AK165193|Ifngr2|15980|interferon gamma receptor 2	AK143214|Ifngr2|15980|interferon gamma receptor 2	AK086929|Ifngr2|15980|interferon gamma receptor 2	AK146995|Ifngr2|15980|interferon gamma receptor 2	S69336|Ifngr2|15980|interferon gamma receptor 2	AK087158|Ifngr2|15980|interferon gamma receptor 2	BC055745|Ifngr2|15980|interferon gamma receptor 2	NM_008338|Ifngr2|15980|interferon gamma receptor 2
mm9_v1_chr17_-_88464582_88464624	0.491835	UCACAUU	BC117884|Fbxo11|225055|F-box protein 11	BC117885|Fbxo11|225055|F-box protein 11	BC128479|Fbxo11|225055|F-box protein 11	NM_001081034|Fbxo11|225055|F-box protein 11
mm9_v1_chr10_-_13194201_13194201	0.486681	UCACAUU	BC012871|Phactr2|215789|phosphatase and actin regulator 2	NM_001195065|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr17_-_47971639_47971639	0.479104	UCACAUU	BC085233|Mdfi|17240|MyoD family inhibitor	NM_001109973|Mdfi|17240|MyoD family inhibitor
mm9_v1_chr14_+_121310342_121310481	0.472697	UCACAUU	AK161668|Ipo5|70572|importin 5	NM_023579|Ipo5|70572|importin 5	AK079134|Ipo5|70572|importin 5	AK049422|Ipo5|70572|importin 5	AK169664|Ipo5|70572|importin 5	AK053681|Ipo5|70572|importin 5	AK017701|Ipo5|70572|importin 5	AK167303|Ipo5|70572|importin 5	AF294327|Ipo5|70572|importin 5	BC052392|Ipo5|70572|importin 5
mm9_v1_chr8_+_128434349_128434353	0.470653	UCACAUU	AK220424|BC021891|234878|cDNA sequence BC021891	NM_145608|BC021891|234878|cDNA sequence BC021891	BC021891|BC021891|234878|cDNA sequence BC021891
mm9_v1_chr9_-_76171352_76171416	0.469548	UCACAUU	AY336084|Hcrtr2|387285|hypocretin (orexin) receptor 2	AY336085|Hcrtr2|387285|hypocretin (orexin) receptor 2	BC140957|Hcrtr2|387285|hypocretin (orexin) receptor 2	AK038551|Hcrtr2|387285|hypocretin (orexin) receptor 2	AK048781|Hcrtr2|387285|hypocretin (orexin) receptor 2	NM_198962|Hcrtr2|387285|hypocretin (orexin) receptor 2	AK079572|Hcrtr2|387285|hypocretin (orexin) receptor 2
mm9_v1_chr10_+_62442963_62442971	0.467842	UCACAUU	AK045485|Rufy2|70432|RUN and FYVE domain-containing 2	NM_027425|Rufy2|70432|RUN and FYVE domain-containing 2
mm9_v1_chr1_+_23768764_23768872	0.461659	UCACAUU	AK052640|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	NM_172124|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	AB055902|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	AK048146|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	AK220433|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	BC056368|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	BC058082|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
mm9_v1_chr2_+_127189021_127189021	0.459388	UCACAUU	BC066862|Adra2b|11552|adrenergic receptor, alpha 2b	NM_009633|Adra2b|11552|adrenergic receptor, alpha 2b
mm9_v1_chr1_-_52290058_52290076	0.456204	UCACAUU	AK173039|Gls|14660|glutaminase	NM_001081081|Gls|14660|glutaminase	NM_001113383|Gls|14660|glutaminase
mm9_v1_chr13_+_47218048_47218098	0.445123	UCACAUU	AK038964|Rnf144b|218215|ring finger protein 144B	AK053529|Rnf144b|218215|ring finger protein 144B	NM_146042|Rnf144b|218215|ring finger protein 144B
mm9_v1_chrX_+_34666757_34666828	0.441931	UCACAUU	NM_025937|Nkap|67050|NFKB activating protein	BC026774|Nkap|67050|NFKB activating protein	AK011492|Nkap|67050|NFKB activating protein	AY388959|Nkap|67050|NFKB activating protein	AK038344|Nkap|67050|NFKB activating protein	AK076125|Nkap|67050|NFKB activating protein	AK012826|Nkap|67050|NFKB activating protein	AK089943|Nkap|67050|NFKB activating protein
mm9_v1_chr6_-_108135548_108135588	0.435377	UCACAUU	BC026981|Sumf1|58911|sulfatase modifying factor 1	AK160917|Sumf1|58911|sulfatase modifying factor 1	AK159192|Sumf1|58911|sulfatase modifying factor 1	AK161203|Sumf1|58911|sulfatase modifying factor 1	AK151874|Sumf1|58911|sulfatase modifying factor 1	NM_145937|Sumf1|58911|sulfatase modifying factor 1
mm9_v1_chr3_+_41359653_41359655	0.422274	UCACAUU	AK049332|Phf17|269424|PHD finger protein 17	NM_001130184|Phf17|269424|PHD finger protein 17
mm9_v1_chr17_+_56724404_56724414	0.420471	UCACAUU	NM_001163300|Safb|224903|scaffold attachment factor B
mm9_v1_chr4_+_55362895_55362941	0.420118	UCACAUU	NM_009011|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK084917|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK142280|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK150089|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK160880|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK163379|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK167582|Rad23b|19359|RAD23b homolog (S. cerevisiae)	BC027747|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK160890|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK160973|Rad23b|19359|RAD23b homolog (S. cerevisiae)
mm9_v1_chr11_+_102977638_102977680	0.415553	UCACAUU	AK134535|Hexim1|192231|hexamethylene bis-acetamide inducible 1	AY090614|Hexim1|192231|hexamethylene bis-acetamide inducible 1	NM_138753|Hexim1|192231|hexamethylene bis-acetamide inducible 1
mm9_v1_chr9_+_72655019_72655080	0.409162	UCACAUU	AY630257|Prtg|235472|protogenin homolog (Gallus gallus)	DQ360114|Prtg|235472|protogenin homolog (Gallus gallus)	NM_175485|Prtg|235472|protogenin homolog (Gallus gallus)
mm9_v1_chr6_-_39675456_39675512	0.40416	UCACAUU	AK140431|Braf|109880|Braf transforming gene	NM_139294|Braf|109880|Braf transforming gene
mm9_v1_chr14_+_75684171_75684233	0.403438	UCACAUU	NM_026083|Zc3h13|67302|zinc finger CCCH type containing 13	AK013285|Zc3h13|67302|zinc finger CCCH type containing 13	AK078225|Zc3h13|67302|zinc finger CCCH type containing 13	BC138264|Zc3h13|67302|zinc finger CCCH type containing 13
mm9_v1_chr11_+_75401554_75401692	0.402576	UCACAUU	AK144618|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152089|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK153569|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK167760|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152874|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK165659|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168720|Pitpna|18738|phosphatidylinositol transfer protein, alpha	U96725|Pitpna|18738|phosphatidylinositol transfer protein, alpha	NM_008850|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK149745|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK151496|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168187|Pitpna|18738|phosphatidylinositol transfer protein, alpha	BC056171|Pitpna|18738|phosphatidylinositol transfer protein, alpha
mm9_v1_chr12_-_74214214_74214231	0.400415	UCACAUU	BC137931|Six4|20474|sine oculis-related homeobox 4 homolog (Drosophila)	BC137934|Six4|20474|sine oculis-related homeobox 4 homolog (Drosophila)	D50416|Six4|20474|sine oculis-related homeobox 4 homolog (Drosophila)	NM_011382|Six4|20474|sine oculis-related homeobox 4 homolog (Drosophila)
mm9_v1_chr14_-_66899764_66899954	0.393732	UCACAUU	AK158980|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	AK054002|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	AK150105|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	AK041878|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	AK088696|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	NM_001162365|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	NM_172498|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta
mm9_v1_chr13_-_101420788_101421037	0.378268	UCACAUU	AJ011923|Rad17|19356|RAD17 homolog (S. pombe)	AF085737|Rad17|19356|RAD17 homolog (S. pombe)	AK167358|Rad17|19356|RAD17 homolog (S. pombe)	AK134277|Rad17|19356|RAD17 homolog (S. pombe)	AK162016|Rad17|19356|RAD17 homolog (S. pombe)	BC066855|Rad17|19356|RAD17 homolog (S. pombe)	BC023939|Rad17|19356|RAD17 homolog (S. pombe)	NM_001044371|Rad17|19356|RAD17 homolog (S. pombe)	NM_011233|Rad17|19356|RAD17 homolog (S. pombe)
mm9_v1_chr10_+_21705909_21705909	0.377414	UCACAUU	NM_001161848|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr11_+_96164825_96164850	0.368612	UCACAUU	M26283|Hoxb5|15413|homeobox B5	NM_008268|Hoxb5|15413|homeobox B5
mm9_v1_chr14_-_79881074_79881074	0.362091	UCACAUU	AK135215|Wbp4|22380|WW domain binding protein 4	NM_018765|Wbp4|22380|WW domain binding protein 4
mm9_v1_chr5_-_124778459_124778459	0.361962	UCACAUU	NM_001081323|Mphosph9|269702|M-phase phosphoprotein 9
mm9_v1_chr11_-_86071041_86071069	0.361757	UCACAUU	AK037055|Ints2|70422|integrator complex subunit 2	AK129323|Ints2|70422|integrator complex subunit 2	NM_027421|Ints2|70422|integrator complex subunit 2
mm9_v1_chr9_-_106150210_106150284	0.356597	UCACAUU	NM_020559|Alas1|11655|aminolevulinic acid synthase 1
mm9_v1_chr13_-_114408704_114408818	0.354994	UCACAUU	AK052343|Snx18|170625|sorting nexin 18	BC137801|Snx18|170625|sorting nexin 18	BC145951|Snx18|170625|sorting nexin 18	AF408408|Snx18|170625|sorting nexin 18	AK155955|Snx18|170625|sorting nexin 18	AK143645|Snx18|170625|sorting nexin 18	BC063089|Snx18|170625|sorting nexin 18	NM_130796|Snx18|170625|sorting nexin 18
mm9_v1_chr4_+_129190824_129190856	0.344073	UCACAUU	NM_010807|Marcksl1|17357|MARCKS-like 1
mm9_v1_chr8_+_111238543_111238543	0.342792	UCACAUU	D26046|Zfhx3|11906|zinc finger homeobox 3	NM_007496|Zfhx3|11906|zinc finger homeobox 3
mm9_v1_chr1_-_74998224_74998295	0.342222	UCACAUU	BC046984|Ihh|16147|Indian hedgehog	NM_010544|Ihh|16147|Indian hedgehog	AK144322|Ihh|16147|Indian hedgehog
mm9_v1_chr14_-_66832383_66832388	0.33086	UCACAUU	BC137704|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	BC144849|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	NM_001162366|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta
mm9_v1_chr4_+_133871031_133871138	0.323393	UCACAUU	NM_001039048|Trim63|433766|tripartite motif-containing 63	BC147663|Trim63|433766|tripartite motif-containing 63	BC147666|Trim63|433766|tripartite motif-containing 63	AK052911|Trim63|433766|tripartite motif-containing 63	DQ229108|Trim63|433766|tripartite motif-containing 63
mm9_v1_chr6_+_43215604_43215702	0.322795	UCACAUU	NM_133674|Arhgef5|54324|Rho guanine nucleotide exchange factor (GEF) 5
mm9_v1_chr19_+_54119671_54119753	0.3194	UCACAUU	NM_007417|Adra2a|11551|adrenergic receptor, alpha 2a	AK141573|Adra2a|11551|adrenergic receptor, alpha 2a	AK140461|Adra2a|11551|adrenergic receptor, alpha 2a	AK046802|Adra2a|11551|adrenergic receptor, alpha 2a
mm9_v1_chr13_+_34967355_34967379	0.317004	UCACAUU	NM_013830|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	AK165391|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm9_v1_chr14_-_98568744_98568810	0.309856	UCACAUU	AF129510|Dach1|13134|dachshund 1 (Drosophila)	BC052005|Dach1|13134|dachshund 1 (Drosophila)	BC059934|Dach1|13134|dachshund 1 (Drosophila)	NM_001038610|Dach1|13134|dachshund 1 (Drosophila)	NM_007826|Dach1|13134|dachshund 1 (Drosophila)
mm9_v1_chr7_-_123138599_123138599	0.300129	UCACAUU	NM_011445|Sox6|20679|SRY-box containing gene 6	U32614|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr10_+_21601968_21601989	0.299405	UCACAUU	BC070401|Sgk1|20393|serum/glucocorticoid regulated kinase 1	NM_001161845|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr6_+_24478143_24478211	0.298824	UCACAUU	AF403043|Asb15|78910|ankyrin repeat and SOCS box-containing 15	AK019556|Asb15|78910|ankyrin repeat and SOCS box-containing 15	NM_080847|Asb15|78910|ankyrin repeat and SOCS box-containing 15	BC050794|Asb15|78910|ankyrin repeat and SOCS box-containing 15	AK029759|Asb15|78910|ankyrin repeat and SOCS box-containing 15
mm9_v1_chr12_-_57636046_57636092	0.29859	UCACAUU	AB221567|Nkx2-1|21869|NK2 homeobox 1	NM_001146198|Nkx2-1|21869|NK2 homeobox 1
mm9_v1_chr18_-_35091570_35091661	0.296384	UCACAUU	BC013717|Etf1|225363|eukaryotic translation termination factor 1	AK170221|Etf1|225363|eukaryotic translation termination factor 1	AK077559|Etf1|225363|eukaryotic translation termination factor 1	AK049607|Etf1|225363|eukaryotic translation termination factor 1	AK164020|Etf1|225363|eukaryotic translation termination factor 1	AK139933|Etf1|225363|eukaryotic translation termination factor 1	AK166740|Etf1|225363|eukaryotic translation termination factor 1	AK169345|Etf1|225363|eukaryotic translation termination factor 1	NM_144866|Etf1|225363|eukaryotic translation termination factor 1
mm9_v1_chr18_-_60872888_60873042	0.291638	UCACAUU	AF049894|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	AF074926|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	BC066098|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	BC079561|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	NM_008306|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm9_v1_chr10_-_114821398_114821490	0.279071	UCACAUU	BC027502|Thap2|66816|THAP domain containing, apoptosis associated protein 2	AK051198|Thap2|66816|THAP domain containing, apoptosis associated protein 2	AK009162|Thap2|66816|THAP domain containing, apoptosis associated protein 2	AK018577|Thap2|66816|THAP domain containing, apoptosis associated protein 2	AK081303|Thap2|66816|THAP domain containing, apoptosis associated protein 2	NM_025780|Thap2|66816|THAP domain containing, apoptosis associated protein 2
mm9_v1_chr4_-_11313886_11313929	0.273952	UCACAUU	AK140848|Esrp1|207920|epithelial splicing regulatory protein 1	NM_194055|Esrp1|207920|epithelial splicing regulatory protein 1
mm9_v1_chr14_-_104921839_104921882	0.271111	UCACAUU	BC029231|Rnf219|72486|ring finger protein 219	AK020974|Rnf219|72486|ring finger protein 219	AK013314|Rnf219|72486|ring finger protein 219	NM_026047|Rnf219|72486|ring finger protein 219
mm9_v1_chr3_-_133207209_133207353	0.262578	UCACAUU	AK155776|Tet2|214133|tet oncogene family member 2	DQ079067|Tet2|214133|tet oncogene family member 2	NM_001040400|Tet2|214133|tet oncogene family member 2
mm9_v1_chr6_-_131243197_131243269	0.262151	UCACAUU	BC027505|Magohb|66441|mago-nashi homolog B (Drosophila)	AK007769|Magohb|66441|mago-nashi homolog B (Drosophila)	AK013310|Magohb|66441|mago-nashi homolog B (Drosophila)	AK006303|Magohb|66441|mago-nashi homolog B (Drosophila)	AK008200|Magohb|66441|mago-nashi homolog B (Drosophila)	NM_025564|Magohb|66441|mago-nashi homolog B (Drosophila)
mm9_v1_chr16_-_50432421_50432504	0.261025	UCACAUU	AK044855|Bbx|70508|bobby sox homolog (Drosophila)	BC019456|Bbx|70508|bobby sox homolog (Drosophila)	BC066821|Bbx|70508|bobby sox homolog (Drosophila)	AF276951|Bbx|70508|bobby sox homolog (Drosophila)	BC064763|Bbx|70508|bobby sox homolog (Drosophila)	BC057869|Bbx|70508|bobby sox homolog (Drosophila)	AK157813|Bbx|70508|bobby sox homolog (Drosophila)	AK049516|Bbx|70508|bobby sox homolog (Drosophila)	AF454943|Bbx|70508|bobby sox homolog (Drosophila)	AK017487|Bbx|70508|bobby sox homolog (Drosophila)	AK029747|Bbx|70508|bobby sox homolog (Drosophila)	AK167724|Bbx|70508|bobby sox homolog (Drosophila)	NM_027444|Bbx|70508|bobby sox homolog (Drosophila)
mm9_v1_chr9_+_110034489_110034583	0.259792	UCACAUU	NM_009211|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK143485|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK144122|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK133922|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	U85614|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK144631|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK145352|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK042194|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	BC056375|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	BC052423|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	BC053064|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	BC022173|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
mm9_v1_chr10_+_21713669_21713695	0.258252	UCACAUU	NM_001161850|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr17_+_8503966_8504073	0.257677	UCACAUU	BC091770|Sft2d1|106489|SFT2 domain containing 1	NM_134114|Sft2d1|106489|SFT2 domain containing 1	BC006777|Sft2d1|106489|SFT2 domain containing 1	AK171776|Sft2d1|106489|SFT2 domain containing 1	AK151338|Sft2d1|106489|SFT2 domain containing 1	BC130232|Sft2d1|106489|SFT2 domain containing 1	AK017471|Sft2d1|106489|SFT2 domain containing 1
mm9_v1_chr19_+_46206383_46206393	0.253189	UCACAUU	NM_007703|Elovl3|12686|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	U97107|Elovl3|12686|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	BC016468|Elovl3|12686|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3
mm9_v1_chr2_-_103637795_103637829	0.245171	UCACAUU	NM_001111291|Caprin1|53872|cell cycle associated protein 1	NM_016739|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr18_+_59334993_59335106	0.242225	UCACAUU	NM_001081328|Chsy3|78923|chondroitin sulfate synthase 3	AK043732|Chsy3|78923|chondroitin sulfate synthase 3	AK044099|Chsy3|78923|chondroitin sulfate synthase 3	AK038429|Chsy3|78923|chondroitin sulfate synthase 3	AK048196|Chsy3|78923|chondroitin sulfate synthase 3	AK220519|Chsy3|78923|chondroitin sulfate synthase 3
mm9_v1_chr4_-_107973683_107973743	0.236428	UCACAUU	AK166278|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK148335|Zyg11b|414872|zyg-ll homolog B (C. elegans)	NM_001033634|Zyg11b|414872|zyg-ll homolog B (C. elegans)
mm9_v1_chr1_-_21952022_21952022	0.235439	UCACAUU	AK147264|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5	NM_001160139|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5	NM_023872|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5
mm9_v1_chr4_-_142802606_142802625	0.228498	UCACAUU	AK087820|Prdm2|110593|PR domain containing 2, with ZNF domain	NM_001081355|Prdm2|110593|PR domain containing 2, with ZNF domain
mm9_v1_chr10_-_110447050_110447195	0.227907	UCACAUU	BC027101|Zdhhc17|320150|zinc finger, DHHC domain containing 17	AK162922|Zdhhc17|320150|zinc finger, DHHC domain containing 17	BC080664|Zdhhc17|320150|zinc finger, DHHC domain containing 17	BC058772|Zdhhc17|320150|zinc finger, DHHC domain containing 17	AK046891|Zdhhc17|320150|zinc finger, DHHC domain containing 17	BC117788|Zdhhc17|320150|zinc finger, DHHC domain containing 17	BC117789|Zdhhc17|320150|zinc finger, DHHC domain containing 17	AK038670|Zdhhc17|320150|zinc finger, DHHC domain containing 17	AK038681|Zdhhc17|320150|zinc finger, DHHC domain containing 17	AK134967|Zdhhc17|320150|zinc finger, DHHC domain containing 17	AK039575|Zdhhc17|320150|zinc finger, DHHC domain containing 17	NM_172554|Zdhhc17|320150|zinc finger, DHHC domain containing 17	AK122406|Zdhhc17|320150|zinc finger, DHHC domain containing 17
mm9_v1_chr2_-_104334610_104334646	0.219225	UCACAUU	NM_001145824|Hipk3|15259|homeodomain interacting protein kinase 3	NM_010434|Hipk3|15259|homeodomain interacting protein kinase 3
mm9_v1_chr11_-_82704059_82704118	0.219157	UCACAUU	AK036272|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB007040|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052828|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052829|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052830|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052831|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052832|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052833|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052834|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	BC049136|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AK147759|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AF034955|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	EU627687|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	EU627688|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	Y15570|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AK017835|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AK138553|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	NM_011235|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)
mm9_v1_chr4_-_132066370_132066424	0.214471	UCACAUU	BC005672|Sesn2|230784|sestrin 2	NM_144907|Sesn2|230784|sestrin 2	AK170228|Sesn2|230784|sestrin 2	AK170547|Sesn2|230784|sestrin 2	AK143788|Sesn2|230784|sestrin 2
mm9_v1_chr2_-_91023154_91023203	0.210408	UCACAUU	AK035777|Madd|228355|MAP-kinase activating death domain	AK036347|Madd|228355|MAP-kinase activating death domain	NM_001177719|Madd|228355|MAP-kinase activating death domain	NM_145527|Madd|228355|MAP-kinase activating death domain
mm9_v1_chr2_-_91019477_91019477	0.19878	UCACAUU	NM_001177720|Madd|228355|MAP-kinase activating death domain
mm9_v1_chr7_+_119822831_119822885	0.196211	UCACAUU	S74227|Tead1|21676|TEA domain family member 1	AK140307|Tead1|21676|TEA domain family member 1	NM_001166584|Tead1|21676|TEA domain family member 1	NM_009346|Tead1|21676|TEA domain family member 1	AK148375|Tead1|21676|TEA domain family member 1
mm9_v1_chr3_-_78949796_78949796	0.18994	UCACAUU	BC067056|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2	NM_001099624|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr11_-_108205199_108205207	0.189446	UCACAUU	AK147084|Prkca|18750|protein kinase C, alpha	NM_011101|Prkca|18750|protein kinase C, alpha
mm9_v1_chr10_+_21714471_21714488	0.187523	UCACAUU	NM_011361|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK086892|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK146037|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK159131|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr9_-_63605745_63605800	0.171925	UCACAUU	AK048626|Smad3|17127|MAD homolog 3 (Drosophila)	NM_016769|Smad3|17127|MAD homolog 3 (Drosophila)
mm9_v1_chr4_+_114079291_114079328	0.165967	UCACAUU	NM_001085549|Gm12824|666048|predicted gene 12824
mm9_v1_chr8_+_119780918_119781056	0.164082	UCACAUU	NM_001163262|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene	AK085367|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene	BC158118|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr17_-_21982590_21982733	0.163577	UCACAUU	AK148228|Zfp820|75424|zinc finger protein 820	AK011694|Zfp820|75424|zinc finger protein 820	NM_029281|Zfp820|75424|zinc finger protein 820	BC019219|Zfp820|75424|zinc finger protein 820
mm9_v1_chr19_-_3686441_3686567	0.156124	UCACAUU	AF077847|Lrp5|16973|low density lipoprotein receptor-related protein 5	AK220186|Lrp5|16973|low density lipoprotein receptor-related protein 5	BC011374|Lrp5|16973|low density lipoprotein receptor-related protein 5	BC094610|Lrp5|16973|low density lipoprotein receptor-related protein 5	AF064984|Lrp5|16973|low density lipoprotein receptor-related protein 5	AK147068|Lrp5|16973|low density lipoprotein receptor-related protein 5	AK147231|Lrp5|16973|low density lipoprotein receptor-related protein 5	AK147330|Lrp5|16973|low density lipoprotein receptor-related protein 5	AK081025|Lrp5|16973|low density lipoprotein receptor-related protein 5	NM_008513|Lrp5|16973|low density lipoprotein receptor-related protein 5
mm9_v1_chr3_+_135101664_135101764	0.113673	UCACAUU	AK153111|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK152231|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK153410|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167801|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK151594|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK032885|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167077|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK090099|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC098220|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC024351|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK004001|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK049906|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	NM_025356|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167650|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK159546|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK152541|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK159963|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC057941|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK088448|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
mm9_v1_chr4_+_59818521_59818521	0.101012	UCACAUU	AK147437|Snx30|209131|sorting nexin family member 30	NM_172468|Snx30|209131|sorting nexin family member 30
mm9_v1_chr2_-_121632749_121632811	0.0964648	UCACAUU	AK054484|Frmd5|228564|FERM domain containing 5	BC062889|Frmd5|228564|FERM domain containing 5	AK146383|Frmd5|228564|FERM domain containing 5	AK048865|Frmd5|228564|FERM domain containing 5	NM_172673|Frmd5|228564|FERM domain containing 5
mm9_v1_chr11_+_77908168_77908192	0.0900684	UCACAUU	AK085728|BC017647|216971|cDNA sequence BC017647	NM_145430|BC017647|216971|cDNA sequence BC017647	AK047860|BC017647|216971|cDNA sequence BC017647	AK140562|BC017647|216971|cDNA sequence BC017647
mm9_v1_chr18_-_58369579_58369752	0.0826596	UCACAUU	AK132163|Fbn2|14119|fibrillin 2	NM_010181|Fbn2|14119|fibrillin 2
mm9_v1_chr10_+_70810540_70810588	0.0811919	UCACAUU	BC052463|Ipmk|69718|inositol polyphosphate multikinase	NM_027184|Ipmk|69718|inositol polyphosphate multikinase	AK036978|Ipmk|69718|inositol polyphosphate multikinase	AK010523|Ipmk|69718|inositol polyphosphate multikinase	AK172246|Ipmk|69718|inositol polyphosphate multikinase	AK171355|Ipmk|69718|inositol polyphosphate multikinase
mm9_v1_chr8_-_63462080_63462110	0.0775602	UCACAUU	AK159698|Clcn3|12725|chloride channel 3	AK036501|Clcn3|12725|chloride channel 3	NM_007711|Clcn3|12725|chloride channel 3	NM_173873|Clcn3|12725|chloride channel 3	NM_173874|Clcn3|12725|chloride channel 3
mm9_v1_chr11_-_103206015_103206015	0.0758152	UCACAUU	AK046763|Arhgap27|544817|Rho GTPase activating protein 27	NM_133715|Arhgap27|544817|Rho GTPase activating protein 27
mm9_v1_chr12_+_86114195_86114258	0.0643185	UCACAUU	AK002936|Isca2|74316|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)	NM_028863|Isca2|74316|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)	BC022589|Isca2|74316|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)	AK019988|Isca2|74316|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)
mm9_v1_chr15_+_10106992_10106998	0.060895	UCACAUU	AK054551|Prlr|19116|prolactin receptor	NM_011169|Prlr|19116|prolactin receptor	AK042147|Prlr|19116|prolactin receptor
mm9_v1_chr17_-_10512217_10512250	0.049034	UCACAUU	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr12_+_17273358_17273435	0.0489342	UCACAUU	AK167386|Pdia6|71853|protein disulfide isomerase associated 6	AK152960|Pdia6|71853|protein disulfide isomerase associated 6	AK005989|Pdia6|71853|protein disulfide isomerase associated 6	AK133792|Pdia6|71853|protein disulfide isomerase associated 6	AK166111|Pdia6|71853|protein disulfide isomerase associated 6	AK168136|Pdia6|71853|protein disulfide isomerase associated 6	AK168279|Pdia6|71853|protein disulfide isomerase associated 6	AK076558|Pdia6|71853|protein disulfide isomerase associated 6	NM_027959|Pdia6|71853|protein disulfide isomerase associated 6	BC006865|Pdia6|71853|protein disulfide isomerase associated 6	AK151008|Pdia6|71853|protein disulfide isomerase associated 6	AK165877|Pdia6|71853|protein disulfide isomerase associated 6
mm9_v1_chr17_-_86087586_86087610	0.0471324	UCACAUU	D83147|Six2|20472|sine oculis-related homeobox 2 homolog (Drosophila)	BC068021|Six2|20472|sine oculis-related homeobox 2 homolog (Drosophila)	NM_011380|Six2|20472|sine oculis-related homeobox 2 homolog (Drosophila)
mm9_v1_chr10_+_82448214_82448242	0.0464991	UCACAUU	NM_021439|Chst11|58250|carbohydrate sulfotransferase 11	AJ289133|Chst11|58250|carbohydrate sulfotransferase 11
mm9_v1_chr7_-_4947629_4947709	0.0457291	UCACAUU	AK003337|Zfp579|68490|zinc finger protein 579	AK082494|Zfp579|68490|zinc finger protein 579	AK143550|Zfp579|68490|zinc finger protein 579	NM_026741|Zfp579|68490|zinc finger protein 579	AK148159|Zfp579|68490|zinc finger protein 579
mm9_v1_chr12_-_57637894_57637894	0.0440634	UCACAUU	BC057607|Nkx2-1|21869|NK2 homeobox 1	NM_009385|Nkx2-1|21869|NK2 homeobox 1
mm9_v1_chr5_+_130230890_130230961	0.0394919	UCACAUU	NM_008095|Gbas|14467|glioblastoma amplified sequence
mm9_v1_chr4_-_82666973_82667005	0.0380869	UCACAUU	BC138427|Frem1|329872|Fras1 related extracellular matrix protein 1	BC145274|Frem1|329872|Fras1 related extracellular matrix protein 1	AJ616838|Frem1|329872|Fras1 related extracellular matrix protein 1	NM_177863|Frem1|329872|Fras1 related extracellular matrix protein 1
mm9_v1_chr12_+_104770650_104770779	0.0210378	UCACAUU	AK029499|Ppp4r4|74521|protein phosphatase 4, regulatory subunit 4	NM_028980|Ppp4r4|74521|protein phosphatase 4, regulatory subunit 4	BC111887|Ppp4r4|74521|protein phosphatase 4, regulatory subunit 4	BC113754|Ppp4r4|74521|protein phosphatase 4, regulatory subunit 4
mm9_v1_chr8_+_106864488_106864703	0.0191023	UCACAUU	AY241870|Cmtm3|68119|CKLF-like MARVEL transmembrane domain containing 3	NM_024217|Cmtm3|68119|CKLF-like MARVEL transmembrane domain containing 3	AK079165|Cmtm3|68119|CKLF-like MARVEL transmembrane domain containing 3	BC003230|Cmtm3|68119|CKLF-like MARVEL transmembrane domain containing 3	AK172091|Cmtm3|68119|CKLF-like MARVEL transmembrane domain containing 3	BC145817|Cmtm3|68119|CKLF-like MARVEL transmembrane domain containing 3	BC145819|Cmtm3|68119|CKLF-like MARVEL transmembrane domain containing 3	AK003882|Cmtm3|68119|CKLF-like MARVEL transmembrane domain containing 3
mm9_v1_chr2_+_130732201_130732231	0.0184014	UCACAUU	AK155069|Atrn|11990|attractin	AF116897|Atrn|11990|attractin	NM_009730|Atrn|11990|attractin
mm9_v1_chr11_+_80290509_80290569	0.0111627	UCACAUU	AK142868|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK086621|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK141549|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK169667|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK079557|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC050768|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	NM_009871|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK039999|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC058697|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC046823|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK048617|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm9_v1_chr6_-_148779856_148779997	0.00699334	UCACAUU	BC151036|Ipo8|320727|importin 8	BC151052|Ipo8|320727|importin 8	BC044819|Ipo8|320727|importin 8	BC054373|Ipo8|320727|importin 8	NM_001081113|Ipo8|320727|importin 8
mm9_v1_chr8_+_85387234_85387370	0.00682023	UCACAUU	AK032722|Rnf150|330812|ring finger protein 150	AK041412|Rnf150|330812|ring finger protein 150	NM_177378|Rnf150|330812|ring finger protein 150	AK220374|Rnf150|330812|ring finger protein 150
mm9_v1_chr1_+_158488917_158488917	0.00622404	UCACAUU	NM_001136104|Abl2|11352|v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)	NM_009595|Abl2|11352|v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)
mm9_v1_chr18_-_23200150_23200199	0.0054689	UCACAUU	AK006244|Nol4|319211|nucleolar protein 4	AK031008|Nol4|319211|nucleolar protein 4	NM_199024|Nol4|319211|nucleolar protein 4	AK005959|Nol4|319211|nucleolar protein 4
mm9_v1_chr13_+_81850415_81850532	0.00385367	UCACAUU	AK046032|Mblac2|72852|metallo-beta-lactamase domain containing 2	NM_028372|Mblac2|72852|metallo-beta-lactamase domain containing 2	AK013594|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC107207|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC114401|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC107206|Mblac2|72852|metallo-beta-lactamase domain containing 2
mm9_v1_chr16_-_85901362_85901374	0.00296321	UCACAUU	NM_011782|Adamts5|23794|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
