mm9_v1_chr19_-_8913619_8913779	81.2318	UGUGCUU	BC029680|Gng3|14704|guanine nucleotide binding protein (G protein), gamma 3	AK032646|Gng3|14704|guanine nucleotide binding protein (G protein), gamma 3	AK004459|Gng3|14704|guanine nucleotide binding protein (G protein), gamma 3	NM_010316|Gng3|14704|guanine nucleotide binding protein (G protein), gamma 3
mm9_v1_chr6_+_114232618_114232629	76.6366	UGUGCUU	NM_178703|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm9_v1_chr2_-_52532100_52532129	68.2603	UGUGCUU	AK147338|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	NM_001037099|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit
mm9_v1_chr2_-_52414072_52414117	67.7969	UGUGCUU	AK043850|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	AK079616|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	AK038633|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	NM_146123|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit
mm9_v1_chr3_+_95985065_95985205	60.7572	UGUGCUU	AK080525|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK144166|Sv2a|64051|synaptic vesicle glycoprotein 2 a	BC046587|Sv2a|64051|synaptic vesicle glycoprotein 2 a	NM_022030|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK080502|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK028318|Sv2a|64051|synaptic vesicle glycoprotein 2 a
mm9_v1_chr1_-_25886551_25886551	59.3319	UGUGCUU	BC099951|Bai3|210933|brain-specific angiogenesis inhibitor 3	NM_175642|Bai3|210933|brain-specific angiogenesis inhibitor 3
mm9_v1_chr2_-_32702729_32702816	59.0004	UGUGCUU	NM_009295|Stxbp1|20910|syntaxin binding protein 1	NM_001113569|Stxbp1|20910|syntaxin binding protein 1
mm9_v1_chr3_-_117063793_117063793	58.4319	UGUGCUU	AF541279|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AK046782|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AY266266|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AY266267|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	NM_177664|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm9_v1_chr7_+_64845887_64845914	55.74	UGUGCUU	AK083107|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	NM_001038701|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm9_v1_chr8_+_98226914_98226962	53.0434	UGUGCUU	NM_001195006|Ndrg4|234593|N-myc downstream regulated gene 4	NM_145602|Ndrg4|234593|N-myc downstream regulated gene 4	AK168873|Ndrg4|234593|N-myc downstream regulated gene 4	AK090374|Ndrg4|234593|N-myc downstream regulated gene 4	AK144294|Ndrg4|234593|N-myc downstream regulated gene 4	BC006595|Ndrg4|234593|N-myc downstream regulated gene 4
mm9_v1_chr2_+_102498839_102498845	52.4327	UGUGCUU	AK134609|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077514|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AK140095|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr11_+_42233258_42233286	50.9612	UGUGCUU	AK090279|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	NM_008070|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	BC145973|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	BC145975|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2
mm9_v1_chr5_+_27375738_27375738	49.4748	UGUGCUU	AK158964|Dpp6|13483|dipeptidylpeptidase 6	NM_207282|Dpp6|13483|dipeptidylpeptidase 6
mm9_v1_chr6_+_21166108_21166108	48.6557	UGUGCUU	BC079667|Kcnd2|16508|potassium voltage-gated channel, Shal-related family, member 2	NM_019697|Kcnd2|16508|potassium voltage-gated channel, Shal-related family, member 2
mm9_v1_chr5_-_21850490_21850524	48.2315	UGUGCUU	U24703|Reln|19699|reelin	AK035849|Reln|19699|reelin	AK042773|Reln|19699|reelin	AK082447|Reln|19699|reelin	AK082508|Reln|19699|reelin	AK164676|Reln|19699|reelin	NM_011261|Reln|19699|reelin
mm9_v1_chrX_+_140127827_140127856	48.0811	UGUGCUU	AF082297|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195046|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195047|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AJ496262|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AJ496263|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AM943853|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AM943854|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr10_+_4424140_4424212	47.2405	UGUGCUU	AK030492|Rgs17|56533|regulator of G-protein signaling 17	NM_001161822|Rgs17|56533|regulator of G-protein signaling 17	NM_019958|Rgs17|56533|regulator of G-protein signaling 17	AK018279|Rgs17|56533|regulator of G-protein signaling 17	AK045770|Rgs17|56533|regulator of G-protein signaling 17	AK046009|Rgs17|56533|regulator of G-protein signaling 17	AK078745|Rgs17|56533|regulator of G-protein signaling 17	AK163188|Rgs17|56533|regulator of G-protein signaling 17	AF191555|Rgs17|56533|regulator of G-protein signaling 17	BC064782|Rgs17|56533|regulator of G-protein signaling 17
mm9_v1_chr2_-_127347102_127347108	47.0092	UGUGCUU	AF287732|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF287733|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	NM_019789|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr15_+_30102306_30102347	46.1317	UGUGCUU	NM_008729|Ctnnd2|18163|catenin (cadherin associated protein), delta 2	U90331|Ctnnd2|18163|catenin (cadherin associated protein), delta 2
mm9_v1_chr5_+_19413335_19413335	45.6519	UGUGCUU	AK147530|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_001170745|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_015823|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chr5_+_37259780_37259853	44.995	UGUGCUU	AY348866|Ppp2r2c|269643|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform	BC059811|Ppp2r2c|269643|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform	NM_172994|Ppp2r2c|269643|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform
mm9_v1_chr5_+_27143896_27143973	44.6665	UGUGCUU	AF092507|Dpp6|13483|dipeptidylpeptidase 6	NM_010075|Dpp6|13483|dipeptidylpeptidase 6	AK082186|Dpp6|13483|dipeptidylpeptidase 6
mm9_v1_chr10_+_89336253_89336253	44.229	UGUGCUU	NM_001128086|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr15_+_100701068_100701116	43.3393	UGUGCUU	NM_001077499|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AK158609|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr15_+_100766701_100766755	42.9931	UGUGCUU	NM_011323|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	U26707|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AF049617|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr17_+_81343933_81344010	42.9867	UGUGCUU	AK013110|Tmem178|68027|transmembrane protein 178	AK014196|Tmem178|68027|transmembrane protein 178	NM_026516|Tmem178|68027|transmembrane protein 178
mm9_v1_chr7_+_64846528_64846556	42.5913	UGUGCUU	AK083051|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	NM_008071|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm9_v1_chr5_+_18732863_18732863	42.476	UGUGCUU	NM_001170746|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chr17_+_24625709_24625729	42.2372	UGUGCUU	NM_027937|Caskin1|268932|CASK interacting protein 1
mm9_v1_chr5_+_27588462_27588514	41.791	UGUGCUU	NM_001136060|Dpp6|13483|dipeptidylpeptidase 6	AK031903|Dpp6|13483|dipeptidylpeptidase 6
mm9_v1_chr2_-_127308234_127308234	41.3861	UGUGCUU	DQ148500|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	NM_001111331|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr6_+_47194393_47194453	40.6273	UGUGCUU	NM_025771|Cntnap2|66797|contactin associated protein-like 2	AK017341|Cntnap2|66797|contactin associated protein-like 2	AK013139|Cntnap2|66797|contactin associated protein-like 2	BC029826|Cntnap2|66797|contactin associated protein-like 2	BC103799|Cntnap2|66797|contactin associated protein-like 2
mm9_v1_chr10_+_90038471_90038471	40.4987	UGUGCUU	BC098373|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177397|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr8_-_72644704_72644742	40.1396	UGUGCUU	X84727|Ncan|13004|neurocan	BC065118|Ncan|13004|neurocan	NM_007789|Ncan|13004|neurocan
mm9_v1_chrX_+_139997806_139997811	40.134	UGUGCUU	NM_008778|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	BC053403|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chrX_+_155852439_155852509	39.9288	UGUGCUU	NM_001081124|Mtap7d2|78283|MAP7 domain containing 2
mm9_v1_chr3_-_32981940_32981960	39.9206	UGUGCUU	AB032591|Pex5l|58869|peroxisomal biogenesis factor 5-like	AK039764|Pex5l|58869|peroxisomal biogenesis factor 5-like	NM_021483|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr12_+_30219769_30219800	39.2993	UGUGCUU	AK036205|Myt1l|17933|myelin transcription factor 1-like	NM_001093776|Myt1l|17933|myelin transcription factor 1-like	BC079651|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr2_-_104250490_104250490	39.2547	UGUGCUU	NM_001033347|D430041D05Rik|241589|RIKEN cDNA D430041D05 gene
mm9_v1_chr10_-_80945445_80945464	39.1586	UGUGCUU	NM_176954|Celf5|319586|CUGBP, Elav-like family member 5
mm9_v1_chr10_+_52410306_52410508	38.8382	UGUGCUU	NM_178675|Slc35f1|215085|solute carrier family 35, member F1	AK038601|Slc35f1|215085|solute carrier family 35, member F1	AK053426|Slc35f1|215085|solute carrier family 35, member F1	AK139331|Slc35f1|215085|solute carrier family 35, member F1	AK048957|Slc35f1|215085|solute carrier family 35, member F1	AK165021|Slc35f1|215085|solute carrier family 35, member F1	AK053545|Slc35f1|215085|solute carrier family 35, member F1	AK083768|Slc35f1|215085|solute carrier family 35, member F1	AK166268|Slc35f1|215085|solute carrier family 35, member F1	BC059075|Slc35f1|215085|solute carrier family 35, member F1	AK163806|Slc35f1|215085|solute carrier family 35, member F1
mm9_v1_chr6_+_45010040_45010086	38.8366	UGUGCUU	NM_001004357|Cntnap2|66797|contactin associated protein-like 2	AK129232|Cntnap2|66797|contactin associated protein-like 2
mm9_v1_chr12_+_30213224_30213265	38.6054	UGUGCUU	AK012660|Myt1l|17933|myelin transcription factor 1-like	AK139366|Myt1l|17933|myelin transcription factor 1-like	NM_001093775|Myt1l|17933|myelin transcription factor 1-like	NM_001093778|Myt1l|17933|myelin transcription factor 1-like	NM_008666|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr4_+_137237557_137237628	38.1366	UGUGCUU	NM_001081155|Rap1gap|110351|Rap1 GTPase-activating protein	BC052065|Rap1gap|110351|Rap1 GTPase-activating protein
mm9_v1_chr19_-_5085471_5085483	37.9147	UGUGCUU	BC072634|Tmem151a|381199|transmembrane protein 151A	NM_001001885|Tmem151a|381199|transmembrane protein 151A
mm9_v1_chr3_-_32884000_32884000	37.7808	UGUGCUU	AK006035|Pex5l|58869|peroxisomal biogenesis factor 5-like	NM_001163517|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr3_+_75361454_75361503	37.1723	UGUGCUU	NM_009250|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	AK032152|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	AK133770|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	BC006776|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	AJ001700|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1
mm9_v1_chr9_+_34296315_34296391	36.9044	UGUGCUU	NM_001190911|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	NM_001190912|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	NM_001190913|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	NM_001190914|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	NM_026324|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	AK013621|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	AY169782|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	AK034142|Kirrel3|67703|kin of IRRE like 3 (Drosophila)	AK079332|Kirrel3|67703|kin of IRRE like 3 (Drosophila)
mm9_v1_chr9_-_44607274_44607334	36.6593	UGUGCUU	AK090375|Tmem25|71687|transmembrane protein 25	AK165827|Tmem25|71687|transmembrane protein 25	AK002841|Tmem25|71687|transmembrane protein 25	NM_027865|Tmem25|71687|transmembrane protein 25	BC060057|Tmem25|71687|transmembrane protein 25	BC060243|Tmem25|71687|transmembrane protein 25	AK154206|Tmem25|71687|transmembrane protein 25	AK165199|Tmem25|71687|transmembrane protein 25
mm9_v1_chr14_+_28435613_28435695	36.6433	UGUGCUU	AK147213|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	BC056760|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	NM_177814|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	AK032385|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2
mm9_v1_chr16_-_46010510_46010548	36.3199	UGUGCUU	NM_001134480|Plcxd2|433022|phosphatidylinositol-specific phospholipase C, X domain containing 2
mm9_v1_chr13_-_52626065_52626204	36.0508	UGUGCUU	AK136096|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	AK136101|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	NM_001024474|Diras2|68203|DIRAS family, GTP-binding RAS-like 2
mm9_v1_chr16_-_67621054_67621188	35.9423	UGUGCUU	AK046800|Cadm2|239857|cell adhesion molecule 2	AK163636|Cadm2|239857|cell adhesion molecule 2	AK038842|Cadm2|239857|cell adhesion molecule 2	AK043760|Cadm2|239857|cell adhesion molecule 2	AK165030|Cadm2|239857|cell adhesion molecule 2	NM_001145977|Cadm2|239857|cell adhesion molecule 2	NM_178721|Cadm2|239857|cell adhesion molecule 2
mm9_v1_chr8_+_86423968_86424035	35.6189	UGUGCUU	NM_181039|Lphn1|330814|latrophilin 1	AK147455|Lphn1|330814|latrophilin 1
mm9_v1_chr5_-_100588826_100588826	35.3808	UGUGCUU	BC055321|Tmem150c|231503|transmembrane protein 150C	NM_182841|Tmem150c|231503|transmembrane protein 150C
mm9_v1_chr10_-_108447674_108447736	35.2975	UGUGCUU	BC042519|Syt1|20979|synaptotagmin I	NM_009306|Syt1|20979|synaptotagmin I
mm9_v1_chr5_+_27231234_27231317	35.0553	UGUGCUU	AK051708|Dpp6|13483|dipeptidylpeptidase 6	BC085154|Dpp6|13483|dipeptidylpeptidase 6	NM_001198886|Dpp6|13483|dipeptidylpeptidase 6
mm9_v1_chr11_-_90252228_90252237	34.6593	UGUGCUU	NM_172563|Hlf|217082|hepatic leukemia factor
mm9_v1_chr2_+_92755251_92755331	34.6307	UGUGCUU	AK044038|Syt13|80976|synaptotagmin XIII	AK082425|Syt13|80976|synaptotagmin XIII	AK083803|Syt13|80976|synaptotagmin XIII	NM_030725|Syt13|80976|synaptotagmin XIII	BC030907|Syt13|80976|synaptotagmin XIII	AK049840|Syt13|80976|synaptotagmin XIII	AB048947|Syt13|80976|synaptotagmin XIII
mm9_v1_chr18_-_25912453_25912483	34.4643	UGUGCUU	AK161918|Celf4|108013|CUGBP, Elav-like family member 4	BC048405|Celf4|108013|CUGBP, Elav-like family member 4	BC052744|Celf4|108013|CUGBP, Elav-like family member 4	NM_001146292|Celf4|108013|CUGBP, Elav-like family member 4	NM_001146293|Celf4|108013|CUGBP, Elav-like family member 4	NM_001146294|Celf4|108013|CUGBP, Elav-like family member 4	NM_001146295|Celf4|108013|CUGBP, Elav-like family member 4	NM_001174074|Celf4|108013|CUGBP, Elav-like family member 4	NM_133195|Celf4|108013|CUGBP, Elav-like family member 4
mm9_v1_chr18_+_36124483_36124488	34.3714	UGUGCUU	BC066026|Psd2|74002|pleckstrin and Sec7 domain containing 2	NM_028707|Psd2|74002|pleckstrin and Sec7 domain containing 2
mm9_v1_chr10_+_90039435_90039495	34.3053	UGUGCUU	AK032211|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177396|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177398|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_181398|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK163750|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK132228|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK019361|Ipw|16353|imprinted gene in the Prader-Willi syndrome region	AK049899|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chrX_+_140100287_140100287	34.1419	UGUGCUU	NM_001195049|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	U39738|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr12_-_68323528_68323535	33.9696	UGUGCUU	AK034513|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2	AK137667|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2	NM_001193266|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2	NM_207010|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2
mm9_v1_chr12_+_3365102_3365131	33.7056	UGUGCUU	AK220283|Kif3c|16570|kinesin family member 3C	NM_008445|Kif3c|16570|kinesin family member 3C
mm9_v1_chr12_+_90191833_90191842	33.4109	UGUGCUU	NM_172544|Nrxn3|18191|neurexin III	AK032126|Nrxn3|18191|neurexin III
mm9_v1_chr15_+_99501148_99501237	33.4035	UGUGCUU	BC067025|Accn2|11419|amiloride-sensitive cation channel 2, neuronal	NM_009597|Accn2|11419|amiloride-sensitive cation channel 2, neuronal
mm9_v1_chr3_-_107320881_107320937	33.2143	UGUGCUU	AK163113|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	AY155578|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	NM_172271|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17
mm9_v1_chr4_-_25727109_25727390	32.9718	UGUGCUU	AK049122|Fut9|14348|fucosyltransferase 9	NM_010243|Fut9|14348|fucosyltransferase 9	AK032177|Fut9|14348|fucosyltransferase 9	AK139133|Fut9|14348|fucosyltransferase 9	AK033607|Fut9|14348|fucosyltransferase 9
mm9_v1_chr10_-_10802102_10802153	32.6559	UGUGCUU	BC067057|Grm1|14816|glutamate receptor, metabotropic 1	NM_001114333|Grm1|14816|glutamate receptor, metabotropic 1	NM_016976|Grm1|14816|glutamate receptor, metabotropic 1	AF320126|Grm1|14816|glutamate receptor, metabotropic 1
mm9_v1_chr6_-_126595818_126595818	32.2232	UGUGCUU	NM_010595|Kcna1|16485|potassium voltage-gated channel, shaker-related subfamily, member 1
mm9_v1_chr13_-_96020120_96020284	31.5613	UGUGCUU	EF644173|Pde8b|218461|phosphodiesterase 8B	NM_172263|Pde8b|218461|phosphodiesterase 8B	BC032286|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr2_+_102546576_102546605	31.4432	UGUGCUU	AB007812|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	BC138255|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	BC138256|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077515|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_011393|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AB007811|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr8_-_74195650_74195661	31.1632	UGUGCUU	NM_001029873|Unc13a|382018|unc-13 homolog A (C. elegans)	AK035920|Unc13a|382018|unc-13 homolog A (C. elegans)
mm9_v1_chr18_-_16967557_16967557	30.3648	UGUGCUU	NM_007664|Cdh2|12558|cadherin 2
mm9_v1_chr11_+_16951911_16951955	30.0269	UGUGCUU	AK019934|Cnrip1|380686|cannabinoid receptor interacting protein 1	BC087946|Cnrip1|380686|cannabinoid receptor interacting protein 1	NM_029861|Cnrip1|380686|cannabinoid receptor interacting protein 1
mm9_v1_chr5_+_14514906_14514924	29.7368	UGUGCUU	NM_001110796|Pclo|26875|piccolo (presynaptic cytomatrix protein)	NM_011995|Pclo|26875|piccolo (presynaptic cytomatrix protein)	Y19185|Pclo|26875|piccolo (presynaptic cytomatrix protein)	Y19186|Pclo|26875|piccolo (presynaptic cytomatrix protein)
mm9_v1_chr6_+_107479719_107479841	29.7305	UGUGCUU	AK139965|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK139355|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK164849|Lrrn1|16979|leucine rich repeat protein 1, neuronal	D45913|Lrrn1|16979|leucine rich repeat protein 1, neuronal	NM_008516|Lrrn1|16979|leucine rich repeat protein 1, neuronal	BC058701|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK160841|Lrrn1|16979|leucine rich repeat protein 1, neuronal
mm9_v1_chr3_+_114783882_114783882	29.6845	UGUGCUU	AF442824|Olfm3|229759|olfactomedin 3	NM_153157|Olfm3|229759|olfactomedin 3
mm9_v1_chr16_-_28753276_28753293	29.6181	UGUGCUU	BC030485|Fgf12|14167|fibroblast growth factor 12	AF020739|Fgf12|14167|fibroblast growth factor 12	NM_010199|Fgf12|14167|fibroblast growth factor 12
mm9_v1_chr7_+_116154373_116154494	29.3075	UGUGCUU	AK165720|Tub|22141|tubby candidate gene	NM_021885|Tub|22141|tubby candidate gene	U52433|Tub|22141|tubby candidate gene	BC096554|Tub|22141|tubby candidate gene	U54643|Tub|22141|tubby candidate gene
mm9_v1_chr13_-_14615371_14615494	28.957	UGUGCUU	AK051569|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK084246|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK086170|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK047678|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	NM_001081348|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK053694|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
mm9_v1_chr1_+_194014677_194014800	28.9246	UGUGCUU	AK140193|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_001038607|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_010600|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	U04294|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109012|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109013|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm9_v1_chr7_-_126138689_126138754	28.8631	UGUGCUU	NM_001195774|Gprc5b|64297|G protein-coupled receptor, family C, group 5, member B	NM_022420|Gprc5b|64297|G protein-coupled receptor, family C, group 5, member B
mm9_v1_chr9_+_26559146_26559146	28.4192	UGUGCUU	BC034655|B3gat1|76898|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	NM_029792|B3gat1|76898|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)
mm9_v1_chr10_-_49508472_49508559	28.3354	UGUGCUU	D10054|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	AK141539|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	NM_001111268|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	NM_010349|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm9_v1_chr1_+_148342795_148342819	27.8723	UGUGCUU	AK046878|Fam5c|215378|family with sequence similarity 5, member C	NM_153539|Fam5c|215378|family with sequence similarity 5, member C	BC099956|Fam5c|215378|family with sequence similarity 5, member C
mm9_v1_chrX_+_139952975_139953253	27.7053	UGUGCUU	AK158893|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195048|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AK031853|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr5_+_34338625_34338665	27.3536	UGUGCUU	AK147307|Nat8l|269642|N-acetyltransferase 8-like	NM_001001985|Nat8l|269642|N-acetyltransferase 8-like
mm9_v1_chr3_-_55987612_55987634	27.2259	UGUGCUU	NM_030595|Nbea|26422|neurobeachin	Y18276|Nbea|26422|neurobeachin
mm9_v1_chr6_-_85452851_85452987	27.0343	UGUGCUU	AK147681|Fbxo41|330369|F-box protein 41	AK147230|Fbxo41|330369|F-box protein 41	NM_001001160|Fbxo41|330369|F-box protein 41	BC070445|Fbxo41|330369|F-box protein 41
mm9_v1_chr2_+_156246644_156246847	26.9995	UGUGCUU	AK147611|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK147272|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK165479|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_001003815|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_013510|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK044744|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK154704|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AF061283|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	BC034751|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr7_+_125856066_125856131	26.9137	UGUGCUU	BC053103|6330503K22Rik|101565|RIKEN cDNA 6330503K22 gene	NM_182995|6330503K22Rik|101565|RIKEN cDNA 6330503K22 gene	AK141641|6330503K22Rik|101565|RIKEN cDNA 6330503K22 gene
mm9_v1_chr1_+_148344816_148344867	25.8274	UGUGCUU	NM_001145807|Fam5c|215378|family with sequence similarity 5, member C	AK083233|Fam5c|215378|family with sequence similarity 5, member C	BC030498|Fam5c|215378|family with sequence similarity 5, member C	AK140520|Fam5c|215378|family with sequence similarity 5, member C
mm9_v1_chr16_-_28445276_28445356	25.7676	UGUGCUU	U66201|Fgf12|14167|fibroblast growth factor 12	AK034335|Fgf12|14167|fibroblast growth factor 12	NM_183064|Fgf12|14167|fibroblast growth factor 12	AF020738|Fgf12|14167|fibroblast growth factor 12
mm9_v1_chr17_-_25073897_25073943	25.5261	UGUGCUU	BC068312|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AB005662|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AF262046|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AF178637|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	BC065105|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163447|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163448|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163449|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163450|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163451|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163453|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_013931|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3
mm9_v1_chr1_+_87791084_87791223	25.4872	UGUGCUU	NM_022417|Itm2c|64294|integral membrane protein 2C	AB030199|Itm2c|64294|integral membrane protein 2C	AK036377|Itm2c|64294|integral membrane protein 2C	AF282981|Itm2c|64294|integral membrane protein 2C	AF272044|Itm2c|64294|integral membrane protein 2C	AK156930|Itm2c|64294|integral membrane protein 2C	BC012952|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr7_+_128535786_128535809	25.4121	UGUGCUU	NM_001081327|Hs3st2|195646|heparan sulfate (glucosamine) 3-O-sulfotransferase 2
mm9_v1_chr9_+_44925922_44925963	25.2125	UGUGCUU	NM_001014761|Scn2b|72821|sodium channel, voltage-gated, type II, beta	AB118947|Scn2b|72821|sodium channel, voltage-gated, type II, beta	BC092225|Scn2b|72821|sodium channel, voltage-gated, type II, beta
mm9_v1_chr3_+_55265654_55265683	25.0448	UGUGCUU	NM_001111051|Dclk1|13175|doublecortin-like kinase 1	NM_001111052|Dclk1|13175|doublecortin-like kinase 1	NM_001195539|Dclk1|13175|doublecortin-like kinase 1	NM_001195540|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr3_+_55046447_55046542	24.9436	UGUGCUU	AK147831|Dclk1|13175|doublecortin-like kinase 1	NM_001111053|Dclk1|13175|doublecortin-like kinase 1	NM_001195538|Dclk1|13175|doublecortin-like kinase 1	NM_019978|Dclk1|13175|doublecortin-like kinase 1	AB093234|Dclk1|13175|doublecortin-like kinase 1	AK164993|Dclk1|13175|doublecortin-like kinase 1	AF155820|Dclk1|13175|doublecortin-like kinase 1	BC064783|Dclk1|13175|doublecortin-like kinase 1	BC021354|Dclk1|13175|doublecortin-like kinase 1	AK043874|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr3_-_36589048_36589088	24.702	UGUGCUU	AK082063|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	AK080619|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	AK032317|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	NM_019510|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3
mm9_v1_chr12_-_5382487_5382487	24.6957	UGUGCUU	BC065168|Klhl29|208439|kelch-like 29 (Drosophila)	NM_001164493|Klhl29|208439|kelch-like 29 (Drosophila)
mm9_v1_chr9_+_44947045_44947124	24.6336	UGUGCUU	BC139399|Scn4b|399548|sodium channel, type IV, beta	BC139400|Scn4b|399548|sodium channel, type IV, beta	AY669079|Scn4b|399548|sodium channel, type IV, beta	NM_001013390|Scn4b|399548|sodium channel, type IV, beta
mm9_v1_chr2_+_71819264_71819343	24.3392	UGUGCUU	AK220281|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AB021132|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AK161934|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AK017479|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AF115480|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	BC139822|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	NM_019688|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4
mm9_v1_chr8_+_10153910_10154187	24.2543	UGUGCUU	BC072580|Myo16|244281|myosin XVI	NM_001081397|Myo16|244281|myosin XVI	BC151049|Myo16|244281|myosin XVI	BC151051|Myo16|244281|myosin XVI	BC157966|Myo16|244281|myosin XVI	BC172122|Myo16|244281|myosin XVI	BC082311|Myo16|244281|myosin XVI	AK082350|Myo16|244281|myosin XVI
mm9_v1_chr17_+_86567003_86567165	24.2032	UGUGCUU	AK082438|Prkce|18754|protein kinase C, epsilon	NM_011104|Prkce|18754|protein kinase C, epsilon	AK042994|Prkce|18754|protein kinase C, epsilon
mm9_v1_chr3_+_138405156_138405310	24.1358	UGUGCUU	NM_019571|Tspan5|56224|tetraspanin 5	AF121344|Tspan5|56224|tetraspanin 5	AK013350|Tspan5|56224|tetraspanin 5	BC058695|Tspan5|56224|tetraspanin 5	BC046784|Tspan5|56224|tetraspanin 5
mm9_v1_chr13_-_54867800_54867840	23.9054	UGUGCUU	BC019409|Sncb|104069|synuclein, beta	NM_033610|Sncb|104069|synuclein, beta
mm9_v1_chr9_-_113935832_113935880	23.7604	UGUGCUU	AK013142|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK089994|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145665|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145998|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK045742|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC096582|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK141177|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK163472|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK044693|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK039010|Fbxl2|72179|F-box and leucine-rich repeat protein 2	NM_178624|Fbxl2|72179|F-box and leucine-rich repeat protein 2
mm9_v1_chr10_+_115614313_115614481	23.3105	UGUGCUU	NM_001161839|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	NM_001161838|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	NM_001161840|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	AF041866|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	AF129509|Ptprr|19279|protein tyrosine phosphatase, receptor type, R
mm9_v1_chr9_+_111341538_111341596	23.2309	UGUGCUU	NM_172928|Dclk3|245038|doublecortin-like kinase 3	AK135010|Dclk3|245038|doublecortin-like kinase 3
mm9_v1_chr2_+_156301543_156301577	23.15	UGUGCUU	NM_001006664|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr11_+_6963421_6963491	23.0248	UGUGCUU	NM_009622|Adcy1|432530|adenylate cyclase 1
mm9_v1_chr2_+_106535757_106535757	22.9938	UGUGCUU	AK012553|Mpped2|77015|metallophosphoesterase domain containing 2	NM_029837|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr10_-_114238419_114238425	22.5798	UGUGCUU	BC032288|Trhde|237553|TRH-degrading enzyme	AK085724|Trhde|237553|TRH-degrading enzyme	NM_146241|Trhde|237553|TRH-degrading enzyme
mm9_v1_chr7_+_98239230_98239295	22.4993	UGUGCUU	NM_011807|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr3_-_80606704_80606756	22.1464	UGUGCUU	AK163941|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK046861|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_001039195|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_001083806|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_013540|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK014389|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm9_v1_chr6_-_145024596_145024703	22.0523	UGUGCUU	BC053706|Bcat1|12035|branched chain aminotransferase 1, cytosolic	X17502|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK167232|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK166971|Bcat1|12035|branched chain aminotransferase 1, cytosolic	NM_007532|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK168249|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr6_-_144997311_144997331	21.9945	UGUGCUU	AK036309|Bcat1|12035|branched chain aminotransferase 1, cytosolic	NM_001024468|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr11_-_94335350_94335511	21.954	UGUGCUU	BC057399|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001112813|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001177888|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001177890|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_009783|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit
mm9_v1_chr9_-_123760992_123761028	21.7266	UGUGCUU	AK081259|Fyco1|17281|FYVE and coiled-coil domain containing 1	AK013060|Fyco1|17281|FYVE and coiled-coil domain containing 1	NM_001110253|Fyco1|17281|FYVE and coiled-coil domain containing 1
mm9_v1_chr3_+_28680223_28680237	21.6962	UGUGCUU	AY205262|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205263|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205264|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205265|Eif5a2|208691|eukaryotic translation initiation factor 5A2	NM_177586|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AK036127|Eif5a2|208691|eukaryotic translation initiation factor 5A2
mm9_v1_chr9_-_16182674_16182674	21.4871	UGUGCUU	NM_001080814|Fat3|270120|FAT tumor suppressor homolog 3 (Drosophila)
mm9_v1_chr6_-_85283412_85283433	21.2391	UGUGCUU	AK036285|Sfxn5|94282|sideroflexin 5	AK043706|Sfxn5|94282|sideroflexin 5	AK082073|Sfxn5|94282|sideroflexin 5	AK038793|Sfxn5|94282|sideroflexin 5	NM_178639|Sfxn5|94282|sideroflexin 5
mm9_v1_chr12_-_71448600_71448600	21.2024	UGUGCUU	BC052034|Trim9|94090|tripartite motif-containing 9	NM_001110202|Trim9|94090|tripartite motif-containing 9	NM_001110203|Trim9|94090|tripartite motif-containing 9	NM_053167|Trim9|94090|tripartite motif-containing 9
mm9_v1_chr5_-_84846348_84846408	21.075	UGUGCUU	BC057401|Epha5|13839|Eph receptor A5	AK133698|Epha5|13839|Eph receptor A5	AK034289|Epha5|13839|Eph receptor A5	AK049740|Epha5|13839|Eph receptor A5	NM_007937|Epha5|13839|Eph receptor A5
mm9_v1_chr9_-_52487410_52487541	20.1673	UGUGCUU	BC109328|AI593442|330941|expressed sequence AI593442	NM_178906|AI593442|330941|expressed sequence AI593442	AK033979|AI593442|330941|expressed sequence AI593442
mm9_v1_chr11_-_84953442_84953491	19.8534	UGUGCUU	AK170234|Usp32|237898|ubiquitin specific peptidase 32	AK148221|Usp32|237898|ubiquitin specific peptidase 32	NM_001029934|Usp32|237898|ubiquitin specific peptidase 32
mm9_v1_chrX_+_69208336_69208359	19.6584	UGUGCUU	BC060135|Prrg3|208748|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)	NM_001081135|Prrg3|208748|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
mm9_v1_chr1_-_129574597_129574597	19.6085	UGUGCUU	BC046234|Tmem163|72160|transmembrane protein 163	BC059048|Tmem163|72160|transmembrane protein 163	NM_028135|Tmem163|72160|transmembrane protein 163
mm9_v1_chr2_-_144353133_144353142	19.5487	UGUGCUU	AK032182|6330439K17Rik|241688|RIKEN cDNA 6330439K17 gene	NM_172859|6330439K17Rik|241688|RIKEN cDNA 6330439K17 gene
mm9_v1_chr8_-_49760037_49760043	19.454	UGUGCUU	BC145284|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)	AB025412|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)	NM_001145937|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)	NM_011857|Odz3|23965|odd Oz/ten-m homolog 3 (Drosophila)
mm9_v1_chr19_-_50752974_50753135	19.3979	UGUGCUU	AF137367|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	AF195056|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	AF284755|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	NM_021377|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	AK030440|Sorcs1|58178|VPS10 domain receptor protein SORCS 1
mm9_v1_chr8_+_65430028_65430291	19.2841	UGUGCUU	AJ278998|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK049843|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK220280|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK013644|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	BC017601|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	NM_023689|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK164338|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	BC053334|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3
mm9_v1_chr7_+_106683983_106683997	19.1572	UGUGCUU	AK147508|Arrb1|109689|arrestin, beta 1	NM_177231|Arrb1|109689|arrestin, beta 1	NM_178220|Arrb1|109689|arrestin, beta 1
mm9_v1_chr10_+_115455342_115455485	19.1106	UGUGCUU	AK051719|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	AK028054|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	NM_011217|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	D31898|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	BC119230|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	BC120547|Ptprr|19279|protein tyrosine phosphatase, receptor type, R
mm9_v1_chr2_+_106533615_106533705	19.0671	UGUGCUU	AK161666|Mpped2|77015|metallophosphoesterase domain containing 2	NM_001143683|Mpped2|77015|metallophosphoesterase domain containing 2	BC020182|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr6_+_103460834_103460869	18.9292	UGUGCUU	AK040765|Chl1|12661|cell adhesion molecule with homology to L1CAM	NM_007697|Chl1|12661|cell adhesion molecule with homology to L1CAM
mm9_v1_chr11_+_105451296_105451348	18.712	UGUGCUU	AK019982|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	NM_181071|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	AK051973|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm9_v1_chr7_-_107520359_107520405	18.702	UGUGCUU	AK146051|Ppme1|72590|protein phosphatase methylesterase 1	BC029064|Ppme1|72590|protein phosphatase methylesterase 1	BC014867|Ppme1|72590|protein phosphatase methylesterase 1	NM_028292|Ppme1|72590|protein phosphatase methylesterase 1
mm9_v1_chr3_+_96400524_96400617	18.383	UGUGCUU	NM_001024851|Ankrd34a|545554|ankyrin repeat domain 34A	BC052924|Ankrd34a|545554|ankyrin repeat domain 34A
mm9_v1_chr12_+_89961317_89961336	18.3805	UGUGCUU	AK078216|Nrxn3|18191|neurexin III	AK082055|Nrxn3|18191|neurexin III	NM_001198587|Nrxn3|18191|neurexin III	AK149250|Nrxn3|18191|neurexin III
mm9_v1_chr2_+_28303460_28303460	18.0578	UGUGCUU	BC070440|Gm347|241289|predicted gene 347	NM_001005420|Gm347|241289|predicted gene 347
mm9_v1_chr13_-_95992994_95993009	18.0387	UGUGCUU	AK043680|Pde8b|218461|phosphodiesterase 8B	AK045991|Pde8b|218461|phosphodiesterase 8B	NM_001170669|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr12_+_81564081_81564252	17.9543	UGUGCUU	AK167692|Exd2|97827|exonuclease 3'-5' domain containing 2	NM_133798|Exd2|97827|exonuclease 3'-5' domain containing 2	AK166390|Exd2|97827|exonuclease 3'-5' domain containing 2	AK146901|Exd2|97827|exonuclease 3'-5' domain containing 2	AK158201|Exd2|97827|exonuclease 3'-5' domain containing 2	AK164329|Exd2|97827|exonuclease 3'-5' domain containing 2	AK147922|Exd2|97827|exonuclease 3'-5' domain containing 2
mm9_v1_chr4_+_57580989_57581153	17.8005	UGUGCUU	AK045344|Palm2|242481|paralemmin 2	NM_172868|Palm2|242481|paralemmin 2	BC113156|Palm2|242481|paralemmin 2
mm9_v1_chr14_-_80171003_80171120	17.785	UGUGCUU	AK140407|Pcdh8|18530|protocadherin 8	AF231125|Pcdh8|18530|protocadherin 8	BC052388|Pcdh8|18530|protocadherin 8	BC053008|Pcdh8|18530|protocadherin 8	AK048638|Pcdh8|18530|protocadherin 8	AK049982|Pcdh8|18530|protocadherin 8	NM_001042726|Pcdh8|18530|protocadherin 8	NM_021543|Pcdh8|18530|protocadherin 8
mm9_v1_chrX_-_5750065_5750108	17.5986	UGUGCUU	BC055771|Nudt10|102954|nudix (nucleoside diphosphate linked moiety X)-type motif 10	NM_001031664|Nudt10|102954|nudix (nucleoside diphosphate linked moiety X)-type motif 10
mm9_v1_chr2_-_57905140_57905276	17.2289	UGUGCUU	DQ334270|Ermn|77767|ermin, ERM-like protein	BC089515|Ermn|77767|ermin, ERM-like protein	NM_029972|Ermn|77767|ermin, ERM-like protein	BC090670|Ermn|77767|ermin, ERM-like protein	AK078089|Ermn|77767|ermin, ERM-like protein	AK136820|Ermn|77767|ermin, ERM-like protein	AK137305|Ermn|77767|ermin, ERM-like protein	AK020733|Ermn|77767|ermin, ERM-like protein	AK220372|Ermn|77767|ermin, ERM-like protein
mm9_v1_chr7_+_146132386_146132432	17.1899	UGUGCUU	AK018189|Jakmip3|74004|janus kinase and microtubule interacting protein 3	AK220482|Jakmip3|74004|janus kinase and microtubule interacting protein 3	NM_028708|Jakmip3|74004|janus kinase and microtubule interacting protein 3
mm9_v1_chr3_-_97628441_97628543	17.157	UGUGCUU	AK031066|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_001110163|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr11_+_29273673_29273774	17.1175	UGUGCUU	AK051140|Ccdc88a|108686|coiled coil domain containing 88A	NM_176841|Ccdc88a|108686|coiled coil domain containing 88A
mm9_v1_chr7_+_106530044_106530083	16.8215	UGUGCUU	BC082585|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5	NM_201352|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5
mm9_v1_chr11_+_72832489_72832515	16.7912	UGUGCUU	AK144483|Camkk1|55984|calcium/calmodulin-dependent protein kinase kinase 1, alpha	NM_018883|Camkk1|55984|calcium/calmodulin-dependent protein kinase kinase 1, alpha
mm9_v1_chrX_+_63902456_63902492	16.7558	UGUGCUU	NM_001161431|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr13_-_55589377_55589460	16.5962	UGUGCUU	AK132060|Dbn1|56320|drebrin 1	AK162697|Dbn1|56320|drebrin 1	AB064321|Dbn1|56320|drebrin 1	AF187147|Dbn1|56320|drebrin 1	AF187148|Dbn1|56320|drebrin 1	NM_001177371|Dbn1|56320|drebrin 1	NM_001177372|Dbn1|56320|drebrin 1	NM_019813|Dbn1|56320|drebrin 1
mm9_v1_chr6_-_12699189_12699252	16.3846	UGUGCUU	NM_001164805|Thsd7a|330267|thrombospondin, type I, domain containing 7A
mm9_v1_chr3_-_33041993_33042007	16.3387	UGUGCUU	AK042235|Pex5l|58869|peroxisomal biogenesis factor 5-like	AK083141|Pex5l|58869|peroxisomal biogenesis factor 5-like	NM_001163516|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr7_+_30088984_30089023	16.3032	UGUGCUU	BC052348|Dpf1|29861|D4, zinc and double PHD fingers family 1	NM_013874|Dpf1|29861|D4, zinc and double PHD fingers family 1	U48238|Dpf1|29861|D4, zinc and double PHD fingers family 1
mm9_v1_chr12_-_81861527_81861701	16.1499	UGUGCUU	AK147473|Gm1568|380768|predicted gene 1568	BC067044|Gm1568|380768|predicted gene 1568	NM_001008423|Gm1568|380768|predicted gene 1568
mm9_v1_chr1_+_91351373_91351428	16.1302	UGUGCUU	AK147503|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	NM_001037136|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	NM_178119|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	AK046523|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	AK129289|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm9_v1_chr19_-_19185685_19185685	15.9863	UGUGCUU	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr13_+_20277293_20277293	15.9347	UGUGCUU	AF398883|Elmo1|140580|engulfment and cell motility 1, ced-12 homolog (C. elegans)	NM_080288|Elmo1|140580|engulfment and cell motility 1, ced-12 homolog (C. elegans)
mm9_v1_chr19_-_7557690_7557778	15.8603	UGUGCUU	BC079882|Rtn3|20168|reticulon 3	BC014697|Rtn3|20168|reticulon 3	AK075883|Rtn3|20168|reticulon 3	AK165683|Rtn3|20168|reticulon 3	AK088670|Rtn3|20168|reticulon 3	AK049845|Rtn3|20168|reticulon 3	AF195940|Rtn3|20168|reticulon 3	AK148792|Rtn3|20168|reticulon 3	AK148947|Rtn3|20168|reticulon 3	AK036892|Rtn3|20168|reticulon 3	AK032109|Rtn3|20168|reticulon 3	AY427822|Rtn3|20168|reticulon 3	AY750849|Rtn3|20168|reticulon 3	AB046114|Rtn3|20168|reticulon 3	AY164700|Rtn3|20168|reticulon 3	NM_053076|Rtn3|20168|reticulon 3	NM_001003933|Rtn3|20168|reticulon 3	NM_001003934|Rtn3|20168|reticulon 3
mm9_v1_chr2_-_140497204_140497211	15.7925	UGUGCUU	AK028252|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK031464|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK161100|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	NM_001172160|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	NM_178382|Flrt3|71436|fibronectin leucine rich transmembrane protein 3
mm9_v1_chr19_-_28057437_28057437	15.7041	UGUGCUU	NM_001166414|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr8_+_56040080_56040120	15.6082	UGUGCUU	NM_153581|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr16_+_55973916_55973970	15.5735	UGUGCUU	NM_173026|Zbtb11|271377|zinc finger and BTB domain containing 11
mm9_v1_chr8_+_128519001_128519113	15.4447	UGUGCUU	NM_008430|Kcnk1|16525|potassium channel, subfamily K, member 1	AF033017|Kcnk1|16525|potassium channel, subfamily K, member 1	AK137224|Kcnk1|16525|potassium channel, subfamily K, member 1
mm9_v1_chr19_-_40476799_40476801	15.3504	UGUGCUU	NM_001034964|Sorbs1|20411|sorbin and SH3 domain containing 1	AK146712|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr16_+_11984205_11984205	15.2659	UGUGCUU	AK012380|Shisa9|72555|shisa homolog 9 (Xenopus laevis)	NM_001174086|Shisa9|72555|shisa homolog 9 (Xenopus laevis)	NM_028277|Shisa9|72555|shisa homolog 9 (Xenopus laevis)
mm9_v1_chr7_+_58877199_58877199	15.2037	UGUGCUU	NM_080853|Slc17a6|140919|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6
mm9_v1_chr1_-_58642994_58643176	15.1826	UGUGCUU	AK052638|Fam126b|213056|family with sequence similarity 126, member B	BC068302|Fam126b|213056|family with sequence similarity 126, member B	AK144602|Fam126b|213056|family with sequence similarity 126, member B	BC049806|Fam126b|213056|family with sequence similarity 126, member B	AK168372|Fam126b|213056|family with sequence similarity 126, member B	NM_172513|Fam126b|213056|family with sequence similarity 126, member B
mm9_v1_chr7_-_35597470_35597729	14.9597	UGUGCUU	AK005217|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	AF308145|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	BC051124|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	AK038952|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	AK051290|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	NM_175140|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8
mm9_v1_chr15_-_48623520_48623540	14.9082	UGUGCUU	AK140264|Csmd3|239420|CUB and Sushi multiple domains 3	AK163122|Csmd3|239420|CUB and Sushi multiple domains 3	NM_001081391|Csmd3|239420|CUB and Sushi multiple domains 3
mm9_v1_chr16_-_34514112_34514198	14.8005	UGUGCUU	BC157950|Kalrn|545156|kalirin, RhoGEF kinase	BC172101|Kalrn|545156|kalirin, RhoGEF kinase	NM_001164268|Kalrn|545156|kalirin, RhoGEF kinase	NM_177357|Kalrn|545156|kalirin, RhoGEF kinase	AK147314|Kalrn|545156|kalirin, RhoGEF kinase	AK147518|Kalrn|545156|kalirin, RhoGEF kinase
mm9_v1_chr10_-_61573705_61573762	14.7937	UGUGCUU	BC024943|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene	AK008338|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene	AK035688|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene	NM_027251|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene
mm9_v1_chr8_+_24780132_24780145	14.5189	UGUGCUU	AK140391|Zmat4|320158|zinc finger, matrin type 4	AK140413|Zmat4|320158|zinc finger, matrin type 4	NM_177086|Zmat4|320158|zinc finger, matrin type 4	AK036254|Zmat4|320158|zinc finger, matrin type 4	AK134793|Zmat4|320158|zinc finger, matrin type 4	BC065110|Zmat4|320158|zinc finger, matrin type 4	BC079657|Zmat4|320158|zinc finger, matrin type 4
mm9_v1_chr7_-_89079335_89079355	14.3075	UGUGCUU	AK045542|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	NM_013886|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3
mm9_v1_chr3_-_97692613_97692634	14.2853	UGUGCUU	BC028274|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	BC141185|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	BC145504|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_001039376|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr11_+_34214821_34214821	14.0877	UGUGCUU	BC072605|Fam196b|574403|family with sequence similarity 196, member B	NM_001025382|Fam196b|574403|family with sequence similarity 196, member B
mm9_v1_chr9_-_66643210_66643296	14.0512	UGUGCUU	AK162585|Aph1b|208117|anterior pharynx defective 1b homolog (C. elegans)	AK049828|Aph1b|208117|anterior pharynx defective 1b homolog (C. elegans)	NM_177583|Aph1b|208117|anterior pharynx defective 1b homolog (C. elegans)	AK028521|Aph1b|208117|anterior pharynx defective 1b homolog (C. elegans)	BC079659|Aph1b|208117|anterior pharynx defective 1b homolog (C. elegans)	AK154847|Aph1b|208117|anterior pharynx defective 1b homolog (C. elegans)
mm9_v1_chr8_-_92872139_92872206	13.9923	UGUGCUU	AK082602|Tox3|244579|TOX high mobility group box family member 3	NM_172913|Tox3|244579|TOX high mobility group box family member 3
mm9_v1_chr6_+_7505070_7505199	13.7583	UGUGCUU	D17584|Tac1|21333|tachykinin 1	NM_009311|Tac1|21333|tachykinin 1	BC117081|Tac1|21333|tachykinin 1	BC119122|Tac1|21333|tachykinin 1	BC144737|Tac1|21333|tachykinin 1
mm9_v1_chr11_-_86807216_86807263	13.5559	UGUGCUU	NM_001005341|Ypel2|77864|yippee-like 2 (Drosophila)
mm9_v1_chr16_-_91011339_91011552	13.5491	UGUGCUU	NM_001045515|Synj1|104015|synaptojanin 1	NM_001164483|Synj1|104015|synaptojanin 1
mm9_v1_chr17_-_56273265_56273275	13.2404	UGUGCUU	AK166077|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	NM_013662|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
mm9_v1_chrX_+_71550301_71550377	13.1658	UGUGCUU	NM_010273|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1
mm9_v1_chr5_-_17866110_17866320	13.0555	UGUGCUU	BC138862|Gnai1|14677|guanine nucleotide binding protein (G protein), alpha inhibiting 1	BC138865|Gnai1|14677|guanine nucleotide binding protein (G protein), alpha inhibiting 1	BC032995|Gnai1|14677|guanine nucleotide binding protein (G protein), alpha inhibiting 1	NM_010305|Gnai1|14677|guanine nucleotide binding protein (G protein), alpha inhibiting 1
mm9_v1_chr3_-_88964078_88964108	12.9092	UGUGCUU	AJ225124|Hcn3|15168|hyperpolarization-activated, cyclic nucleotide-gated K+ 3	NM_008227|Hcn3|15168|hyperpolarization-activated, cyclic nucleotide-gated K+ 3	AK032225|Hcn3|15168|hyperpolarization-activated, cyclic nucleotide-gated K+ 3
mm9_v1_chrX_-_22942176_22942193	12.8703	UGUGCUU	AK004677|Klhl13|67455|kelch-like 13 (Drosophila)	NM_026167|Klhl13|67455|kelch-like 13 (Drosophila)	AK045102|Klhl13|67455|kelch-like 13 (Drosophila)	AK051752|Klhl13|67455|kelch-like 13 (Drosophila)
mm9_v1_chr12_+_117724182_117724212	12.8231	UGUGCUU	NM_011215|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2	AK081267|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2	AK138655|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2	BC048570|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2
mm9_v1_chrX_-_159081510_159081550	12.8069	UGUGCUU	AY263368|Reps2|194590|RALBP1 associated Eps domain containing protein 2	NM_178256|Reps2|194590|RALBP1 associated Eps domain containing protein 2
mm9_v1_chr16_-_15594609_15594629	12.697	UGUGCUU	NM_001159351|Ube2v2|70620|ubiquitin-conjugating enzyme E2 variant 2	NM_023585|Ube2v2|70620|ubiquitin-conjugating enzyme E2 variant 2
mm9_v1_chr2_+_54288789_54288827	12.6837	UGUGCUU	AK035964|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	AK030726|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	AK038387|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	AK045417|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	NM_173030|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13
mm9_v1_chr9_-_44096170_44096326	12.663	UGUGCUU	AY040865|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AF411084|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AJ426047|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AF425077|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	BC016200|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AK043147|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	NM_138955|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4
mm9_v1_chr4_+_13711928_13711928	12.3842	UGUGCUU	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr11_+_6295127_6295189	12.3791	UGUGCUU	NM_001005867|Zmiz2|52915|zinc finger, MIZ-type containing 2	BC060652|Zmiz2|52915|zinc finger, MIZ-type containing 2
mm9_v1_chr10_-_109437274_109437274	12.3515	UGUGCUU	NM_001081035|Nav3|260315|neuron navigator 3
mm9_v1_chr10_-_9620837_9620892	12.2942	UGUGCUU	NM_001081344|Stxbp5|78808|syntaxin binding protein 5 (tomosyn)
mm9_v1_chr3_-_57651621_57651757	12.2923	UGUGCUU	NM_019410|Pfn2|18645|profilin 2
mm9_v1_chr1_-_186823350_186823427	12.2677	UGUGCUU	AB185282|Mark1|226778|MAP/microtubule affinity-regulating kinase 1	BC112400|Mark1|226778|MAP/microtubule affinity-regulating kinase 1	AF453686|Mark1|226778|MAP/microtubule affinity-regulating kinase 1	NM_145515|Mark1|226778|MAP/microtubule affinity-regulating kinase 1
mm9_v1_chr1_-_21952022_21952022	12.1064	UGUGCUU	AK147264|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5	NM_001160139|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5	NM_023872|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5
mm9_v1_chr4_-_41450064_41450152	12.0764	UGUGCUU	BC137640|AI464131|329828|expressed sequence AI464131	BC140956|AI464131|329828|expressed sequence AI464131	AK173117|AI464131|329828|expressed sequence AI464131	NM_001085515|AI464131|329828|expressed sequence AI464131
mm9_v1_chr10_+_13686174_13686209	11.7969	UGUGCUU	AK147244|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147348|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147655|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	NM_010437|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2
mm9_v1_chr5_-_103640272_103640352	11.736	UGUGCUU	AK036275|Mapk10|26414|mitogen-activated protein kinase 10	BC046625|Mapk10|26414|mitogen-activated protein kinase 10	AK163206|Mapk10|26414|mitogen-activated protein kinase 10	AK076990|Mapk10|26414|mitogen-activated protein kinase 10	BC026697|Mapk10|26414|mitogen-activated protein kinase 10	AK082242|Mapk10|26414|mitogen-activated protein kinase 10	NM_001081567|Mapk10|26414|mitogen-activated protein kinase 10	NM_009158|Mapk10|26414|mitogen-activated protein kinase 10
mm9_v1_chr2_-_25978328_25978339	11.7141	UGUGCUU	AK147293|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	NM_026495|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr2_+_179177132_179177182	11.6761	UGUGCUU	BC047991|Cdh4|12561|cadherin 4	NM_009867|Cdh4|12561|cadherin 4
mm9_v1_chr2_+_49643205_49643207	11.581	UGUGCUU	NM_027990|Lypd6b|71897|LY6/PLAUR domain containing 6B	AK009282|Lypd6b|71897|LY6/PLAUR domain containing 6B
mm9_v1_chr5_-_113739711_113739807	11.4877	UGUGCUU	BC138049|Sgsm1|52850|small G protein signaling modulator 1	BC138050|Sgsm1|52850|small G protein signaling modulator 1	AK053555|Sgsm1|52850|small G protein signaling modulator 1	AK044716|Sgsm1|52850|small G protein signaling modulator 1	AK170021|Sgsm1|52850|small G protein signaling modulator 1	NM_001162965|Sgsm1|52850|small G protein signaling modulator 1	NM_172718|Sgsm1|52850|small G protein signaling modulator 1
mm9_v1_chr11_+_59475986_59476013	11.4482	UGUGCUU	AK154807|Mprip|26936|myosin phosphatase Rho interacting protein	NM_012027|Mprip|26936|myosin phosphatase Rho interacting protein	NM_201245|Mprip|26936|myosin phosphatase Rho interacting protein	AK158296|Mprip|26936|myosin phosphatase Rho interacting protein	AK171089|Mprip|26936|myosin phosphatase Rho interacting protein	AK170849|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr15_-_78548542_78548542	11.38	UGUGCUU	BC094219|Elfn2|207393|leucine rich repeat and fibronectin type III, extracellular 2	NM_183141|Elfn2|207393|leucine rich repeat and fibronectin type III, extracellular 2
mm9_v1_chr1_+_39251056_39251116	11.3206	UGUGCUU	U77969|Npas2|18143|neuronal PAS domain protein 2	BC109166|Npas2|18143|neuronal PAS domain protein 2	NM_008719|Npas2|18143|neuronal PAS domain protein 2
mm9_v1_chr14_+_104049453_104049469	11.2889	UGUGCUU	BC079866|Slain1|105439|SLAIN motif family, member 1	NM_198014|Slain1|105439|SLAIN motif family, member 1
mm9_v1_chr19_-_40525876_40525887	10.7713	UGUGCUU	AF078666|Sorbs1|20411|sorbin and SH3 domain containing 1	AF078667|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_001034962|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_001034963|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr3_-_138738152_138738164	10.5937	UGUGCUU	AK158465|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	NM_001040690|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	NM_145544|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1	AK172052|Rap1gds1|229877|RAP1, GTP-GDP dissociation stimulator 1
mm9_v1_chr13_+_93381086_93381215	10.5535	UGUGCUU	AK165334|Serinc5|218442|serine incorporator 5	BC049189|Serinc5|218442|serine incorporator 5	BC062131|Serinc5|218442|serine incorporator 5	NM_172588|Serinc5|218442|serine incorporator 5	AK037699|Serinc5|218442|serine incorporator 5	AK163675|Serinc5|218442|serine incorporator 5	AB029501|Serinc5|218442|serine incorporator 5
mm9_v1_chr14_-_65716932_65716942	10.4254	UGUGCUU	NM_018788|Extl3|54616|exostoses (multiple)-like 3
mm9_v1_chr15_+_91958558_91958558	10.3494	UGUGCUU	NM_007727|Cntn1|12805|contactin 1
mm9_v1_chr1_-_162281701_162281701	10.2678	UGUGCUU	AK147634|Rabgap1l|29809|RAB GTPase activating protein 1-like	NM_001038621|Rabgap1l|29809|RAB GTPase activating protein 1-like
mm9_v1_chr4_+_42930076_42930171	10.2414	UGUGCUU	BC057092|N28178|230085|expressed sequence N28178	NM_172690|N28178|230085|expressed sequence N28178	AK046283|N28178|230085|expressed sequence N28178	AK038528|N28178|230085|expressed sequence N28178
mm9_v1_chr9_-_66682454_66682525	10.1541	UGUGCUU	AB197123|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)	AK002310|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)	BC050923|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)	BC063254|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)	NM_026674|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)	AK155147|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)
mm9_v1_chr5_+_73872293_73872293	9.98274	UGUGCUU	AK076991|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_001190734|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr15_+_91881593_91881615	9.96945	UGUGCUU	AK138969|Cntn1|12805|contactin 1	NM_001159648|Cntn1|12805|contactin 1
mm9_v1_chr5_-_51945054_51945159	9.94348	UGUGCUU	BC066868|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AB061324|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AF049330|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK143753|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK138668|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	NM_008904|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm9_v1_chr1_-_72583137_72583137	9.92662	UGUGCUU	BC098191|March4|381270|membrane-associated ring finger (C3HC4) 4	NM_001045533|March4|381270|membrane-associated ring finger (C3HC4) 4
mm9_v1_chr18_+_57292743_57292743	9.63844	UGUGCUU	AK147238|Megf10|70417|multiple EGF-like-domains 10	NM_001001979|Megf10|70417|multiple EGF-like-domains 10
mm9_v1_chr8_-_108861850_108861887	9.61883	UGUGCUU	AK087515|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	AK076416|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	AK139226|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	AK019476|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	AK162894|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	BC043077|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	NM_021491|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral
mm9_v1_chr19_-_19075535_19075606	9.40918	UGUGCUU	DQ779924|Rorb|225998|RAR-related orphan receptor beta	BC024768|Rorb|225998|RAR-related orphan receptor beta	AK044421|Rorb|225998|RAR-related orphan receptor beta	BC024842|Rorb|225998|RAR-related orphan receptor beta	NM_146095|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr11_+_104092749_104092776	9.09739	UGUGCUU	M18775|Mapt|17762|microtubule-associated protein tau	M18776|Mapt|17762|microtubule-associated protein tau	NM_001038609|Mapt|17762|microtubule-associated protein tau	NM_010838|Mapt|17762|microtubule-associated protein tau	AK078167|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr14_-_100548982_100549014	9.08528	UGUGCUU	AB221575|Klf12|16597|Kruppel-like factor 12	Y14295|Klf12|16597|Kruppel-like factor 12	BC067408|Klf12|16597|Kruppel-like factor 12	NM_010636|Klf12|16597|Kruppel-like factor 12
mm9_v1_chr19_-_40588219_40588234	9.05593	UGUGCUU	AK087553|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_178362|Sorbs1|20411|sorbin and SH3 domain containing 1	BC012703|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chrX_-_101396356_101396482	9.04675	UGUGCUU	AK220439|C77370|245555|expressed sequence C77370	DQ975302|C77370|245555|expressed sequence C77370	DQ975303|C77370|245555|expressed sequence C77370	NM_001077354|C77370|245555|expressed sequence C77370	AK038635|C77370|245555|expressed sequence C77370
mm9_v1_chr4_+_13670425_13670448	9.01552	UGUGCUU	AK142006|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_001111026|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr11_+_116976475_116976498	8.91248	UGUGCUU	AK047396|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	NM_001166506|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	NM_001166507|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	NM_028777|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)
mm9_v1_chr3_+_58810899_58810899	8.80739	UGUGCUU	AK047743|Med12l|329650|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like	NM_177855|Med12l|329650|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like
mm9_v1_chr5_+_73882264_73882364	8.79069	UGUGCUU	NM_001190733|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_178896|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	AK033559|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137627|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137628|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC144794|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC060213|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC108346|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr4_+_125168074_125168079	8.77344	UGUGCUU	NM_001081097|Grik3|14807|glutamate receptor, ionotropic, kainate 3	BC118004|Grik3|14807|glutamate receptor, ionotropic, kainate 3
mm9_v1_chr8_-_101940218_101940356	8.76141	UGUGCUU	BC060200|Cdh8|12564|cadherin 8	BC057581|Cdh8|12564|cadherin 8	AK044046|Cdh8|12564|cadherin 8	AK139334|Cdh8|12564|cadherin 8	AK083092|Cdh8|12564|cadherin 8	AK041720|Cdh8|12564|cadherin 8	AK086711|Cdh8|12564|cadherin 8	NM_001039154|Cdh8|12564|cadherin 8	NM_007667|Cdh8|12564|cadherin 8
mm9_v1_chr11_+_70658261_70658270	8.74808	UGUGCUU	AK134587|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	NM_019400|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1
mm9_v1_chr2_-_125549883_125549883	8.7067	UGUGCUU	AK036946|Shc4|271849|SHC (Src homology 2 domain containing) family, member 4	NM_199022|Shc4|271849|SHC (Src homology 2 domain containing) family, member 4
mm9_v1_chr10_-_76881008_76881043	8.69424	UGUGCUU	AK138318|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AK147298|Adarb1|110532|adenosine deaminase, RNA-specific, B1	NM_001024837|Adarb1|110532|adenosine deaminase, RNA-specific, B1	NM_130895|Adarb1|110532|adenosine deaminase, RNA-specific, B1
mm9_v1_chr7_+_104991443_104991474	8.64403	UGUGCUU	BC055740|Pak1|18479|p21 protein (Cdc42/Rac)-activated kinase 1	BC060157|Pak1|18479|p21 protein (Cdc42/Rac)-activated kinase 1	NM_011035|Pak1|18479|p21 protein (Cdc42/Rac)-activated kinase 1	BC079838|Pak1|18479|p21 protein (Cdc42/Rac)-activated kinase 1
mm9_v1_chr15_+_91991704_91991862	8.62701	UGUGCUU	NM_001159647|Cntn1|12805|contactin 1	BC066864|Cntn1|12805|contactin 1
mm9_v1_chr16_+_72663393_72663448	8.38346	UGUGCUU	AK138485|Robo1|19876|roundabout homolog 1 (Drosophila)	AK143001|Robo1|19876|roundabout homolog 1 (Drosophila)	NM_019413|Robo1|19876|roundabout homolog 1 (Drosophila)	AK032752|Robo1|19876|roundabout homolog 1 (Drosophila)	AK142047|Robo1|19876|roundabout homolog 1 (Drosophila)
mm9_v1_chr3_+_98186380_98186408	8.29679	UGUGCUU	AK034880|Zfp697|242109|zinc finger protein 697	AK086791|Zfp697|242109|zinc finger protein 697	NM_172863|Zfp697|242109|zinc finger protein 697
mm9_v1_chr5_-_113444509_113444571	8.25411	UGUGCUU	AK172513|Adrbk2|320129|adrenergic receptor kinase, beta 2	AK048763|Adrbk2|320129|adrenergic receptor kinase, beta 2	AK134672|Adrbk2|320129|adrenergic receptor kinase, beta 2	AK141186|Adrbk2|320129|adrenergic receptor kinase, beta 2	NM_001035531|Adrbk2|320129|adrenergic receptor kinase, beta 2	NM_177078|Adrbk2|320129|adrenergic receptor kinase, beta 2
mm9_v1_chr2_-_130665832_130665882	8.22459	UGUGCUU	BC052447|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	NM_029432|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK015050|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK158367|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK089462|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK143611|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene	AK045996|4930402H24Rik|228602|RIKEN cDNA 4930402H24 gene
mm9_v1_chr9_+_74885522_74885560	8.1226	UGUGCUU	BC040206|Arpp19|59046|cAMP-regulated phosphoprotein 19	NM_021548|Arpp19|59046|cAMP-regulated phosphoprotein 19
mm9_v1_chr12_+_87582805_87582876	8.04215	UGUGCUU	BC048169|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	AK031712|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	AK006185|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	BC058256|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	NM_027405|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	AK147916|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	BC050782|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	AK129299|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene
mm9_v1_chr12_-_100139666_100139693	8.03104	UGUGCUU	AK081694|Eml5|319670|echinoderm microtubule associated protein like 5	NM_001081191|Eml5|319670|echinoderm microtubule associated protein like 5
mm9_v1_chr4_-_94645735_94645794	8.01676	UGUGCUU	AK164103|Mysm1|320713|myb-like, SWIRM and MPN domains 1	AK081684|Mysm1|320713|myb-like, SWIRM and MPN domains 1	AK145221|Mysm1|320713|myb-like, SWIRM and MPN domains 1	AK166402|Mysm1|320713|myb-like, SWIRM and MPN domains 1	BC150946|Mysm1|320713|myb-like, SWIRM and MPN domains 1	BC151172|Mysm1|320713|myb-like, SWIRM and MPN domains 1	AK043802|Mysm1|320713|myb-like, SWIRM and MPN domains 1	NM_177239|Mysm1|320713|myb-like, SWIRM and MPN domains 1
mm9_v1_chrX_+_138662479_138662479	7.82175	UGUGCUU	NM_001161430|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chr19_-_28085534_28085655	7.82025	UGUGCUU	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr2_+_130275977_130276080	7.69341	UGUGCUU	AK010458|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	NM_001163688|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	NM_008980|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	AK031690|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	AK165673|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	BC050930|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	BC110683|Ptpra|19262|protein tyrosine phosphatase, receptor type, A
mm9_v1_chr1_-_133423902_133423973	7.65725	UGUGCUU	AK143649|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2	NM_001081011|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2
mm9_v1_chr5_+_117583596_117583674	7.50872	UGUGCUU	AK155208|Taok3|330177|TAO kinase 3	NM_001081308|Taok3|330177|TAO kinase 3	AK171353|Taok3|330177|TAO kinase 3	AK037817|Taok3|330177|TAO kinase 3	AK042181|Taok3|330177|TAO kinase 3
mm9_v1_chrX_+_63906333_63906333	7.45447	UGUGCUU	BC111888|Slitrk2|245450|SLIT and NTRK-like family, member 2	BC112406|Slitrk2|245450|SLIT and NTRK-like family, member 2	NM_198863|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr19_-_40588297_40588344	7.38872	UGUGCUU	NM_009166|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr9_+_74885420_74885510	7.36341	UGUGCUU	NM_001142655|Arpp19|59046|cAMP-regulated phosphoprotein 19	AK076052|Arpp19|59046|cAMP-regulated phosphoprotein 19
mm9_v1_chr11_+_98724908_98724950	7.19981	UGUGCUU	NM_197940|Wipf2|68524|WAS/WASL interacting protein family, member 2
mm9_v1_chr6_+_143115732_143115821	7.18402	UGUGCUU	AK051039|Etnk1|75320|ethanolamine kinase 1	AK044502|Etnk1|75320|ethanolamine kinase 1	NM_029250|Etnk1|75320|ethanolamine kinase 1	AK016135|Etnk1|75320|ethanolamine kinase 1	AK031560|Etnk1|75320|ethanolamine kinase 1	AK033268|Etnk1|75320|ethanolamine kinase 1	AK164928|Etnk1|75320|ethanolamine kinase 1
mm9_v1_chr7_-_4796261_4796301	7.17741	UGUGCUU	NM_172737|Shisa7|232813|shisa homolog 7 (Xenopus laevis)
mm9_v1_chr14_+_55713609_55713673	7.1406	UGUGCUU	NM_153083|Thtpa|105663|thiamine triphosphatase
mm9_v1_chr2_+_58998885_58998932	7.06331	UGUGCUU	AK146720|Pkp4|227937|plakophilin 4	NM_026361|Pkp4|227937|plakophilin 4	NM_175464|Pkp4|227937|plakophilin 4
mm9_v1_chr4_-_3501912_3501958	6.97037	UGUGCUU	AK048210|Tmem68|72098|transmembrane protein 68	NM_028097|Tmem68|72098|transmembrane protein 68	BC016240|Tmem68|72098|transmembrane protein 68	AK008493|Tmem68|72098|transmembrane protein 68	AK084881|Tmem68|72098|transmembrane protein 68	AK147765|Tmem68|72098|transmembrane protein 68	AK162563|Tmem68|72098|transmembrane protein 68	AK088600|Tmem68|72098|transmembrane protein 68
mm9_v1_chr10_-_105011439_105011534	6.93489	UGUGCUU	BC092226|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	AK052344|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	AK135552|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	NM_177368|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2
mm9_v1_chr9_-_42913797_42913909	6.88211	UGUGCUU	AK009331|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12	AK122267|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12	NM_027144|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12
mm9_v1_chr7_+_28043740_28043802	6.79957	UGUGCUU	NM_010950|Numbl|18223|numb-like
mm9_v1_chr18_+_22503589_22503589	6.79369	UGUGCUU	AK082659|Asxl3|211961|additional sex combs like 3 (Drosophila)	NM_001167777|Asxl3|211961|additional sex combs like 3 (Drosophila)
mm9_v1_chr13_+_83643032_83643032	6.76076	UGUGCUU	NM_001170537|Mef2c|17260|myocyte enhancer factor 2C	NM_025282|Mef2c|17260|myocyte enhancer factor 2C
mm9_v1_chr13_+_81850415_81850532	6.75785	UGUGCUU	AK046032|Mblac2|72852|metallo-beta-lactamase domain containing 2	NM_028372|Mblac2|72852|metallo-beta-lactamase domain containing 2	AK013594|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC107207|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC114401|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC107206|Mblac2|72852|metallo-beta-lactamase domain containing 2
mm9_v1_chr12_+_85455277_85455306	6.74109	UGUGCUU	NM_028821|Dnalc1|105000|dynein, axonemal, light chain 1
mm9_v1_chr15_+_83610434_83610456	6.67847	UGUGCUU	AK048421|Mpped1|223726|metallophosphoesterase domain containing 1	NM_172610|Mpped1|223726|metallophosphoesterase domain containing 1
mm9_v1_chr16_+_33062606_33062616	6.49027	UGUGCUU	AK030463|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	BC111899|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	BC112428|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	NM_172823|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)
mm9_v1_chr6_-_57775039_57775171	6.47496	UGUGCUU	BC024884|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK170152|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK170832|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK030975|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	BC024822|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	NM_146168|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK031812|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK158041|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK165256|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1
mm9_v1_chr11_-_97436439_97436456	6.38342	UGUGCUU	AF040944|Srcin1|56013|SRC kinase signaling inhibitor 1	NM_018873|Srcin1|56013|SRC kinase signaling inhibitor 1	U59873|Srcin1|56013|SRC kinase signaling inhibitor 1
mm9_v1_chr7_-_36539369_36539472	6.38242	UGUGCUU	BC059897|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK045758|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031722|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	BC050065|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK033395|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AF538322|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031345|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK034217|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	NM_178704|Dpy19l3|233115|dpy-19-like 3 (C. elegans)
mm9_v1_chr8_+_119873069_119873069	6.30886	UGUGCUU	AK016712|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene	NM_028941|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr12_-_28027541_28027588	6.28528	UGUGCUU	AK146514|Sox11|20666|SRY-box containing gene 11	AF009414|Sox11|20666|SRY-box containing gene 11	BC078643|Sox11|20666|SRY-box containing gene 11	AK165693|Sox11|20666|SRY-box containing gene 11	AK165005|Sox11|20666|SRY-box containing gene 11	NM_009234|Sox11|20666|SRY-box containing gene 11
mm9_v1_chr9_-_56008828_56008912	6.25629	UGUGCUU	AK159621|Tspan3|56434|tetraspanin 3	AK159324|Tspan3|56434|tetraspanin 3	AK169068|Tspan3|56434|tetraspanin 3	BC043072|Tspan3|56434|tetraspanin 3	AK146130|Tspan3|56434|tetraspanin 3	AK168231|Tspan3|56434|tetraspanin 3	NM_019793|Tspan3|56434|tetraspanin 3
mm9_v1_chr6_+_71443871_71443920	6.25463	UGUGCUU	D76445|Rnf103|22644|ring finger protein 103	NM_009543|Rnf103|22644|ring finger protein 103	AK168644|Rnf103|22644|ring finger protein 103	AK146898|Rnf103|22644|ring finger protein 103
mm9_v1_chr17_-_56279684_56279770	6.1339	UGUGCUU	AK139358|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	AK143229|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	NM_001130456|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
mm9_v1_chr19_+_23215704_23215723	6.11735	UGUGCUU	AK028544|Klf9|16601|Kruppel-like factor 9	NM_010638|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr11_-_77303157_77303183	6.06466	UGUGCUU	BC151158|Ankrd13b|268445|ankyrin repeat domain 13b	BC172028|Ankrd13b|268445|ankyrin repeat domain 13b	NM_172945|Ankrd13b|268445|ankyrin repeat domain 13b
mm9_v1_chr2_+_69561103_69561149	6.05209	UGUGCUU	AK135178|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC150694|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	AK134121|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	NM_001081086|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC027420|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chr11_-_66339627_66339627	6.02986	UGUGCUU	AK147504|Shisa6|380702|shisa homolog 6 (Xenopus laevis)	NM_001034874|Shisa6|380702|shisa homolog 6 (Xenopus laevis)
mm9_v1_chr5_-_123214252_123214302	5.9855	UGUGCUU	AF453383|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta	BC023103|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta	NM_145358|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chr18_+_24867945_24868023	5.9588	UGUGCUU	AB078608|Fhod3|225288|formin homology 2 domain containing 3	AB078609|Fhod3|225288|formin homology 2 domain containing 3	AB100088|Fhod3|225288|formin homology 2 domain containing 3	NM_175276|Fhod3|225288|formin homology 2 domain containing 3	AK148245|Fhod3|225288|formin homology 2 domain containing 3	BC138046|Fhod3|225288|formin homology 2 domain containing 3
mm9_v1_chr2_+_65508501_65508501	5.93482	UGUGCUU	NM_001099298|Scn2a1|110876|sodium channel, voltage-gated, type II, alpha 1
mm9_v1_chr17_-_91492065_91492142	5.92346	UGUGCUU	BC079893|Nrxn1|18189|neurexin I	AK005349|Nrxn1|18189|neurexin I	AK139280|Nrxn1|18189|neurexin I	AK163484|Nrxn1|18189|neurexin I	AK037724|Nrxn1|18189|neurexin I	AB093249|Nrxn1|18189|neurexin I	NM_020252|Nrxn1|18189|neurexin I	NM_177284|Nrxn1|18189|neurexin I	AK137407|Nrxn1|18189|neurexin I
mm9_v1_chr9_-_58052107_58052125	5.91299	UGUGCUU	NM_001161541|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2
mm9_v1_chr13_+_8202111_8202186	5.87874	UGUGCUU	AK134964|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK051460|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK043249|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK139079|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK139273|Adarb2|94191|adenosine deaminase, RNA-specific, B2	NM_052977|Adarb2|94191|adenosine deaminase, RNA-specific, B2	BC059822|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK046083|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK033916|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK045538|Adarb2|94191|adenosine deaminase, RNA-specific, B2	BC052426|Adarb2|94191|adenosine deaminase, RNA-specific, B2
mm9_v1_chrX_-_71070284_71070317	5.83929	UGUGCUU	AK046101|Pdzd4|245469|PDZ domain containing 4	NM_001029868|Pdzd4|245469|PDZ domain containing 4
mm9_v1_chr11_+_6289339_6289394	5.83873	UGUGCUU	NM_028601|Zmiz2|52915|zinc finger, MIZ-type containing 2
mm9_v1_chr17_+_50648736_50648932	5.80036	UGUGCUU	AB033615|Plcl2|224860|phospholipase C-like 2	NM_013880|Plcl2|224860|phospholipase C-like 2	AK165548|Plcl2|224860|phospholipase C-like 2	AK154288|Plcl2|224860|phospholipase C-like 2
mm9_v1_chr17_-_51965912_51965912	5.79554	UGUGCUU	NM_001163631|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr18_+_20823750_20823857	5.67871	UGUGCUU	NM_013697|Ttr|22139|transthyretin	BC024702|Ttr|22139|transthyretin
mm9_v1_chr10_-_80488111_80488155	5.62714	UGUGCUU	AK081336|Diras1|208666|DIRAS family, GTP-binding RAS-like 1	BC057556|Diras1|208666|DIRAS family, GTP-binding RAS-like 1	NM_145217|Diras1|208666|DIRAS family, GTP-binding RAS-like 1
mm9_v1_chr9_-_70504934_70505009	5.5938	UGUGCUU	BC058683|Fam63b|235461|family with sequence similarity 63, member B	AK046623|Fam63b|235461|family with sequence similarity 63, member B	BC049357|Fam63b|235461|family with sequence similarity 63, member B	AK046403|Fam63b|235461|family with sequence similarity 63, member B	AK035930|Fam63b|235461|family with sequence similarity 63, member B	NM_172772|Fam63b|235461|family with sequence similarity 63, member B	AK220158|Fam63b|235461|family with sequence similarity 63, member B
mm9_v1_chr15_-_103070227_103070257	5.54484	UGUGCUU	BC004707|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001076789|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr5_-_90312358_90312358	5.50987	UGUGCUU	AK031900|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	NM_001081401|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	NM_177872|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3
mm9_v1_chr6_-_118147735_118147761	5.49745	UGUGCUU	BC059012|Ret|19713|ret proto-oncogene	NM_001080780|Ret|19713|ret proto-oncogene	NM_009050|Ret|19713|ret proto-oncogene
mm9_v1_chr4_+_28740280_28740313	5.46478	UGUGCUU	AK033903|Epha7|13841|Eph receptor A7	NM_001122889|Epha7|13841|Eph receptor A7	NM_010141|Epha7|13841|Eph receptor A7	X79082|Epha7|13841|Eph receptor A7	X79083|Epha7|13841|Eph receptor A7	X79084|Epha7|13841|Eph receptor A7
mm9_v1_chr8_-_126039287_126039398	5.41299	UGUGCUU	BC046622|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	AK028187|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	AK163434|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	NM_001170975|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	NM_001170976|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	NM_028146|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1
mm9_v1_chr11_-_96691261_96691289	5.36055	UGUGCUU	AK152040|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	AK153529|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_008686|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr3_-_38383688_38383798	5.3568	UGUGCUU	AK129484|Ankrd50|99696|ankyrin repeat domain 50	NM_001167883|Ankrd50|99696|ankyrin repeat domain 50
mm9_v1_chr5_+_122161617_122161617	5.29558	UGUGCUU	AF041472|Atxn2|20239|ataxin 2	NM_009125|Atxn2|20239|ataxin 2
mm9_v1_chr16_+_38902431_38902466	5.28241	UGUGCUU	BC057555|Igsf11|207683|immunoglobulin superfamily, member 11	NM_170599|Igsf11|207683|immunoglobulin superfamily, member 11
mm9_v1_chr2_-_25947915_25947915	5.2392	UGUGCUU	NM_001037098|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr11_-_4018706_4018793	5.21042	UGUGCUU	BC005759|Sec14l2|67815|SEC14-like 2 (S. cerevisiae)	NM_144520|Sec14l2|67815|SEC14-like 2 (S. cerevisiae)
mm9_v1_chr4_-_4720451_4720507	5.19998	UGUGCUU	BC048776|Impad1|242291|inositol monophosphatase domain containing 1	NM_177730|Impad1|242291|inositol monophosphatase domain containing 1	AK045511|Impad1|242291|inositol monophosphatase domain containing 1
mm9_v1_chrX_-_110299092_110299131	5.06142	UGUGCUU	BC047461|Chm|12662|choroidermia	AK035956|Chm|12662|choroidermia	AK141830|Chm|12662|choroidermia	AF218084|Chm|12662|choroidermia	NM_018818|Chm|12662|choroidermia	AK021238|Chm|12662|choroidermia
mm9_v1_chr4_-_70195952_70195978	5.04234	UGUGCUU	AK122378|Megf9|230316|multiple EGF-like-domains 9	AK035987|Megf9|230316|multiple EGF-like-domains 9	AK039319|Megf9|230316|multiple EGF-like-domains 9	AK162891|Megf9|230316|multiple EGF-like-domains 9	NM_172694|Megf9|230316|multiple EGF-like-domains 9	AK170687|Megf9|230316|multiple EGF-like-domains 9
mm9_v1_chr18_+_33098694_33098843	5.02153	UGUGCUU	NM_009793|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	AK030219|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	BC070420|Camk4|12326|calcium/calmodulin-dependent protein kinase IV
mm9_v1_chr11_-_96690784_96690815	4.99851	UGUGCUU	AK154167|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	AK085935|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130450|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr14_-_19071459_19071620	4.95301	UGUGCUU	BC096461|Nr1d2|353187|nuclear receptor subfamily 1, group D, member 2	AK079075|Nr1d2|353187|nuclear receptor subfamily 1, group D, member 2	AK054522|Nr1d2|353187|nuclear receptor subfamily 1, group D, member 2	U12142|Nr1d2|353187|nuclear receptor subfamily 1, group D, member 2	NM_011584|Nr1d2|353187|nuclear receptor subfamily 1, group D, member 2
mm9_v1_chr17_-_80689815_80689815	4.93586	UGUGCUU	BC062952|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	NM_001163759|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	NM_198942|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
mm9_v1_chr17_-_67703726_67703889	4.92416	UGUGCUU	X58287|Ptprm|19274|protein tyrosine phosphatase, receptor type, M	BC058614|Ptprm|19274|protein tyrosine phosphatase, receptor type, M	NM_008984|Ptprm|19274|protein tyrosine phosphatase, receptor type, M
mm9_v1_chr18_-_35374663_35374683	4.86549	UGUGCUU	AK122278|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK036155|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK044705|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK046774|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	NM_178005|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2
mm9_v1_chr17_+_7374435_7374635	4.77613	UGUGCUU	BC055331|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	NM_011299|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	AK044173|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	BC043064|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	BC056946|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	BC051079|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	AK019881|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2	AJ131021|Rps6ka2|20112|ribosomal protein S6 kinase, polypeptide 2
mm9_v1_chr1_+_43009716_43009807	4.77261	UGUGCUU	AK054151|Gpr45|93690|G protein-coupled receptor 45	NM_053107|Gpr45|93690|G protein-coupled receptor 45	AK035091|Gpr45|93690|G protein-coupled receptor 45	AK039769|Gpr45|93690|G protein-coupled receptor 45
mm9_v1_chrX_-_130223380_130223542	4.7602	UGUGCUU	AK046726|Pcdh19|279653|protocadherin 19	NM_001105245|Pcdh19|279653|protocadherin 19	NM_001105246|Pcdh19|279653|protocadherin 19
mm9_v1_chr19_-_36131650_36131849	4.72707	UGUGCUU	AK138150|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	FM178515|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	FM178516|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	BC116986|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	Z23107|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	AK139197|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	NM_008315|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7
mm9_v1_chr6_+_115084919_115085009	4.61109	UGUGCUU	AF096867|Syn2|20965|synapsin II	NM_001111015|Syn2|20965|synapsin II	NM_013681|Syn2|20965|synapsin II	BC053427|Syn2|20965|synapsin II
mm9_v1_chr12_-_109241423_109241623	4.61105	UGUGCUU	BC019503|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AF186019|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AK088219|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043551|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043553|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043583|Bcl11b|58208|B-cell leukemia/lymphoma 11B	NM_001079883|Bcl11b|58208|B-cell leukemia/lymphoma 11B	NM_021399|Bcl11b|58208|B-cell leukemia/lymphoma 11B
mm9_v1_chr18_-_67708826_67708826	4.61001	UGUGCUU	BC058320|Spire1|68166|spire homolog 1 (Drosophila)	NM_176832|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chr18_-_67712374_67712430	4.59689	UGUGCUU	BC058669|Spire1|68166|spire homolog 1 (Drosophila)	NM_194355|Spire1|68166|spire homolog 1 (Drosophila)	BC094375|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chr15_+_32850477_32850629	4.56195	UGUGCUU	NM_008304|Sdc2|15529|syndecan 2	U00674|Sdc2|15529|syndecan 2	BC047144|Sdc2|15529|syndecan 2	AK011042|Sdc2|15529|syndecan 2
mm9_v1_chrX_+_138662725_138662809	4.55239	UGUGCUU	NM_172782|Nxt2|237082|nuclear transport factor 2-like export factor 2	AK144349|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC064727|Nxt2|237082|nuclear transport factor 2-like export factor 2	AK032102|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC068166|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC118503|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC094570|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chr9_+_74823917_74823980	4.52881	UGUGCUU	BC031353|BC031353|235493|cDNA sequence BC031353	NM_153584|BC031353|235493|cDNA sequence BC031353
mm9_v1_chr2_-_39046224_39046253	4.46425	UGUGCUU	BC132485|Scai|320271|suppressor of cancer cell invasion	BC144986|Scai|320271|suppressor of cancer cell invasion	BC144987|Scai|320271|suppressor of cancer cell invasion	BC144989|Scai|320271|suppressor of cancer cell invasion	AK044772|Scai|320271|suppressor of cancer cell invasion	AK082408|Scai|320271|suppressor of cancer cell invasion	AK083280|Scai|320271|suppressor of cancer cell invasion	NM_178778|Scai|320271|suppressor of cancer cell invasion	AK163712|Scai|320271|suppressor of cancer cell invasion
mm9_v1_chr15_-_96473193_96473343	4.43388	UGUGCUU	AK162612|Slc38a1|105727|solute carrier family 38, member 1	AK081724|Slc38a1|105727|solute carrier family 38, member 1	NM_001166458|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr9_-_57315800_57315896	4.28766	UGUGCUU	AF241833|Scamp5|56807|secretory carrier membrane protein 5	BC018613|Scamp5|56807|secretory carrier membrane protein 5	NM_020270|Scamp5|56807|secretory carrier membrane protein 5
mm9_v1_chr1_-_194677940_194677940	4.23136	UGUGCUU	NM_001177794|Sertad4|214791|SERTA domain containing 4
mm9_v1_chr12_+_96930429_96930467	4.21149	UGUGCUU	AK135149|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	NM_201518|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	AK136973|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	BC067058|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	AK041311|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	BC096471|Flrt2|399558|fibronectin leucine rich transmembrane protein 2
mm9_v1_chr9_+_119803988_119804030	4.13177	UGUGCUU	BC050106|Wdr48|67561|WD repeat domain 48	AK031244|Wdr48|67561|WD repeat domain 48	BC062967|Wdr48|67561|WD repeat domain 48	AK018396|Wdr48|67561|WD repeat domain 48	AK030041|Wdr48|67561|WD repeat domain 48	AK035273|Wdr48|67561|WD repeat domain 48	AK035864|Wdr48|67561|WD repeat domain 48	AK043970|Wdr48|67561|WD repeat domain 48	AK128953|Wdr48|67561|WD repeat domain 48	NM_026236|Wdr48|67561|WD repeat domain 48	AK033631|Wdr48|67561|WD repeat domain 48	AK012599|Wdr48|67561|WD repeat domain 48	BC048155|Wdr48|67561|WD repeat domain 48
mm9_v1_chr15_-_96472392_96472392	4.12627	UGUGCUU	AK034130|Slc38a1|105727|solute carrier family 38, member 1	NM_134086|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr1_+_158488917_158488917	4.09045	UGUGCUU	NM_001136104|Abl2|11352|v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)	NM_009595|Abl2|11352|v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)
mm9_v1_chrX_+_99044723_99044723	4.05283	UGUGCUU	AK142977|Nhsl2|100042480|NHS-like 2	NM_001163610|Nhsl2|100042480|NHS-like 2
mm9_v1_chr15_-_103170514_103170552	4.01797	UGUGCUU	AF118566|Zfp385a|29813|zinc finger protein 385A	NM_013866|Zfp385a|29813|zinc finger protein 385A	AK137748|Zfp385a|29813|zinc finger protein 385A
mm9_v1_chr10_+_56097078_56097350	3.98015	UGUGCUU	AY427554|Gja1|14609|gap junction protein, alpha 1	AY427555|Gja1|14609|gap junction protein, alpha 1	NM_010288|Gja1|14609|gap junction protein, alpha 1	M63801|Gja1|14609|gap junction protein, alpha 1	AK011459|Gja1|14609|gap junction protein, alpha 1	AK036979|Gja1|14609|gap junction protein, alpha 1	AK145692|Gja1|14609|gap junction protein, alpha 1	AK161997|Gja1|14609|gap junction protein, alpha 1	AK171955|Gja1|14609|gap junction protein, alpha 1	AY427560|Gja1|14609|gap junction protein, alpha 1	BC006894|Gja1|14609|gap junction protein, alpha 1	BC055375|Gja1|14609|gap junction protein, alpha 1	AK029291|Gja1|14609|gap junction protein, alpha 1	AK165986|Gja1|14609|gap junction protein, alpha 1	X61576|Gja1|14609|gap junction protein, alpha 1	AY427556|Gja1|14609|gap junction protein, alpha 1	AY427557|Gja1|14609|gap junction protein, alpha 1	AY427558|Gja1|14609|gap junction protein, alpha 1
mm9_v1_chr9_-_121614076_121614146	3.97103	UGUGCUU	AK029985|Sec22c|215474|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	BC046289|Sec22c|215474|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	AK031125|Sec22c|215474|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	AK044249|Sec22c|215474|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	NM_001164562|Sec22c|215474|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	NM_178677|Sec22c|215474|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)
mm9_v1_chr19_-_7369859_7369936	3.93612	UGUGCUU	AK172664|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080390|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	AK154864|Mark2|13728|MAP/microtubule affinity-regulating kinase 2
mm9_v1_chr19_-_7416286_7416363	3.9062	UGUGCUU	BC058556|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	AK172444|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080388|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080389|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_007928|Mark2|13728|MAP/microtubule affinity-regulating kinase 2
mm9_v1_chr4_+_101092307_101092393	3.87417	UGUGCUU	NM_009647|Ak4|11639|adenylate kinase 4	AK144439|Ak4|11639|adenylate kinase 4	BC086791|Ak4|11639|adenylate kinase 4	D85036|Ak4|11639|adenylate kinase 4	AB020239|Ak4|11639|adenylate kinase 4	BC086663|Ak4|11639|adenylate kinase 4	AK166975|Ak4|11639|adenylate kinase 4
mm9_v1_chr18_-_47528483_47528523	3.85814	UGUGCUU	BC059238|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	AK042751|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	NM_018744|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	AK082711|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm9_v1_chr4_+_101091913_101091947	3.83385	UGUGCUU	NM_001177605|Ak4|11639|adenylate kinase 4	AK154374|Ak4|11639|adenylate kinase 4	NM_001177604|Ak4|11639|adenylate kinase 4
mm9_v1_chr13_+_88961034_88961117	3.77925	UGUGCUU	AF031525|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK046885|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	NM_001037987|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	NM_010103|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK157810|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK141907|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK135220|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK139093|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK036117|Edil3|13612|EGF-like repeats and discoidin I-like domains 3
mm9_v1_chr2_-_33743465_33743465	3.73639	UGUGCUU	BC059907|Fam125b|72543|family with sequence similarity 125, member B	NM_175184|Fam125b|72543|family with sequence similarity 125, member B
mm9_v1_chr9_-_123760686_123760944	3.69281	UGUGCUU	AJ428065|Fyco1|17281|FYVE and coiled-coil domain containing 1	NM_148925|Fyco1|17281|FYVE and coiled-coil domain containing 1	BC053712|Fyco1|17281|FYVE and coiled-coil domain containing 1
mm9_v1_chr17_-_36046961_36047023	3.67364	UGUGCUU	AK049682|Atat1|73242|alpha tubulin acetyltransferase 1	AK014265|Atat1|73242|alpha tubulin acetyltransferase 1	AK011750|Atat1|73242|alpha tubulin acetyltransferase 1	AK034725|Atat1|73242|alpha tubulin acetyltransferase 1	AK133694|Atat1|73242|alpha tubulin acetyltransferase 1	BC030669|Atat1|73242|alpha tubulin acetyltransferase 1	AK011350|Atat1|73242|alpha tubulin acetyltransferase 1	BC028847|Atat1|73242|alpha tubulin acetyltransferase 1	AK011838|Atat1|73242|alpha tubulin acetyltransferase 1	AK028297|Atat1|73242|alpha tubulin acetyltransferase 1	NM_001142744|Atat1|73242|alpha tubulin acetyltransferase 1	NM_001142745|Atat1|73242|alpha tubulin acetyltransferase 1	NM_028476|Atat1|73242|alpha tubulin acetyltransferase 1
mm9_v1_chr6_+_30351902_30351953	3.6359	UGUGCUU	AK172923|Klhdc10|76788|kelch domain containing 10	BC060132|Klhdc10|76788|kelch domain containing 10	NM_029742|Klhdc10|76788|kelch domain containing 10	AK039732|Klhdc10|76788|kelch domain containing 10	AK053834|Klhdc10|76788|kelch domain containing 10	AK085130|Klhdc10|76788|kelch domain containing 10
mm9_v1_chr1_+_138027943_138028013	3.58698	UGUGCUU	NM_001039472|Kif21b|16565|kinesin family member 21B
mm9_v1_chr19_+_36629128_36629172	3.56851	UGUGCUU	AK142777|Hectd2|226098|HECT domain containing 2	NM_001163471|Hectd2|226098|HECT domain containing 2	NM_172637|Hectd2|226098|HECT domain containing 2	BC137671|Hectd2|226098|HECT domain containing 2	BC144815|Hectd2|226098|HECT domain containing 2	AK041629|Hectd2|226098|HECT domain containing 2	AK043646|Hectd2|226098|HECT domain containing 2	AK079321|Hectd2|226098|HECT domain containing 2
mm9_v1_chr11_-_23397927_23397986	3.54839	UGUGCUU	BC038397|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	BC052829|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK033696|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK093945|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	NM_172391|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK154196|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK155265|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK137116|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)
mm9_v1_chr16_-_18235102_18235235	3.54607	UGUGCUU	AY668947|Zdhhc8|27801|zinc finger, DHHC domain containing 8	AY894892|Zdhhc8|27801|zinc finger, DHHC domain containing 8	NM_172151|Zdhhc8|27801|zinc finger, DHHC domain containing 8
mm9_v1_chr10_-_13194201_13194201	3.47536	UGUGCUU	BC012871|Phactr2|215789|phosphatase and actin regulator 2	NM_001195065|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr18_-_62071451_62071482	3.38635	UGUGCUU	BC094229|Ablim3|319713|actin binding LIM protein family, member 3	AK082380|Ablim3|319713|actin binding LIM protein family, member 3	BC060275|Ablim3|319713|actin binding LIM protein family, member 3	NM_198649|Ablim3|319713|actin binding LIM protein family, member 3
mm9_v1_chr1_-_137481914_137481937	3.35647	UGUGCUU	NM_173437|Nav1|215690|neuron navigator 1
mm9_v1_chr7_-_106775612_106775612	3.35129	UGUGCUU	NM_001195529|Gm4980|245190|predicted gene 4980
mm9_v1_chrX_-_140367467_140367853	3.34855	UGUGCUU	AY560329|Dcx|13193|doublecortin	AK048410|Dcx|13193|doublecortin	AF045547|Dcx|13193|doublecortin	AK164119|Dcx|13193|doublecortin	BC056391|Dcx|13193|doublecortin	AK049050|Dcx|13193|doublecortin	NM_001110222|Dcx|13193|doublecortin	BC057010|Dcx|13193|doublecortin	BC062974|Dcx|13193|doublecortin	AK014264|Dcx|13193|doublecortin	NM_001110223|Dcx|13193|doublecortin	NM_001110224|Dcx|13193|doublecortin	NM_010025|Dcx|13193|doublecortin	AB011678|Dcx|13193|doublecortin
mm9_v1_chr8_-_24367395_24367561	3.29748	UGUGCUU	BC058523|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK158227|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	BC019697|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AB041568|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK150696|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	BC016894|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	BC103796|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	BC093518|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK077582|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK152606|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK048175|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK170129|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK089856|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK150462|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK151353|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK152520|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK153213|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	NM_001042484|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	NM_020585|Golga7|57437|golgi autoantigen, golgin subfamily a, 7
mm9_v1_chr8_+_63702967_63703040	3.25662	UGUGCUU	NM_021506|Sh3rf1|59009|SH3 domain containing ring finger 1	BC060113|Sh3rf1|59009|SH3 domain containing ring finger 1	BC060696|Sh3rf1|59009|SH3 domain containing ring finger 1	AK088003|Sh3rf1|59009|SH3 domain containing ring finger 1	AK148137|Sh3rf1|59009|SH3 domain containing ring finger 1
mm9_v1_chr7_+_142729505_142729604	3.19098	UGUGCUU	AK004602|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	NM_011212|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	U35368|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	BC024631|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	AK132455|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	U62387|Ptpre|19267|protein tyrosine phosphatase, receptor type, E
mm9_v1_chr15_-_90509751_90509818	3.16874	UGUGCUU	AK005311|Cpne8|66871|copine VIII	BC076564|Cpne8|66871|copine VIII	BC017626|Cpne8|66871|copine VIII	AK013407|Cpne8|66871|copine VIII	AK004559|Cpne8|66871|copine VIII	BC138745|Cpne8|66871|copine VIII	BC138746|Cpne8|66871|copine VIII	AK010227|Cpne8|66871|copine VIII	BC048551|Cpne8|66871|copine VIII	NM_001033851|Cpne8|66871|copine VIII	NM_025815|Cpne8|66871|copine VIII
mm9_v1_chr9_-_58050091_58050164	3.15845	UGUGCUU	NM_001161536|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	NM_177193|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	NM_001161539|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2
mm9_v1_chr3_-_78949796_78949796	3.14442	UGUGCUU	BC067056|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2	NM_001099624|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr12_-_92828896_92828926	3.08552	UGUGCUU	BC117829|Gtf2a1|83602|general transcription factor II A, 1	BC117830|Gtf2a1|83602|general transcription factor II A, 1	AK048711|Gtf2a1|83602|general transcription factor II A, 1	NM_175335|Gtf2a1|83602|general transcription factor II A, 1
mm9_v1_chr2_+_30271550_30271576	3.00582	UGUGCUU	AK031591|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	NM_138748|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)
mm9_v1_chr5_-_39076043_39076064	2.98291	UGUGCUU	NM_001081144|Zfp518b|100515|zinc finger protein 518B	NM_001177902|Zfp518b|100515|zinc finger protein 518B
mm9_v1_chr7_-_52184840_52184904	2.92953	UGUGCUU	NM_001077264|Ap2a1|11771|adaptor protein complex AP-2, alpha 1 subunit	NM_007458|Ap2a1|11771|adaptor protein complex AP-2, alpha 1 subunit
mm9_v1_chr5_+_67651890_67652024	2.89799	UGUGCUU	AK012413|Tmem33|67878|transmembrane protein 33	NM_028975|Tmem33|67878|transmembrane protein 33	NM_030108|Tmem33|67878|transmembrane protein 33	AK032555|Tmem33|67878|transmembrane protein 33	AK005493|Tmem33|67878|transmembrane protein 33	AK007750|Tmem33|67878|transmembrane protein 33	AK017281|Tmem33|67878|transmembrane protein 33	AK153441|Tmem33|67878|transmembrane protein 33	AK007607|Tmem33|67878|transmembrane protein 33	BC005562|Tmem33|67878|transmembrane protein 33	AK165369|Tmem33|67878|transmembrane protein 33
mm9_v1_chr18_-_62071494_62071513	2.88789	UGUGCUU	NM_001164491|Ablim3|319713|actin binding LIM protein family, member 3
mm9_v1_chr3_+_114606995_114607339	2.8856	UGUGCUU	AK049612|Olfm3|229759|olfactomedin 3	AK044605|Olfm3|229759|olfactomedin 3	AK045482|Olfm3|229759|olfactomedin 3	AK038569|Olfm3|229759|olfactomedin 3	AK079315|Olfm3|229759|olfactomedin 3	AK044325|Olfm3|229759|olfactomedin 3	AK137414|Olfm3|229759|olfactomedin 3	AF442825|Olfm3|229759|olfactomedin 3	NM_153458|Olfm3|229759|olfactomedin 3	BC112422|Olfm3|229759|olfactomedin 3	BC113129|Olfm3|229759|olfactomedin 3
mm9_v1_chr9_-_108092712_108092716	2.87838	UGUGCUU	NM_007567|Bsn|12217|bassoon
mm9_v1_chr17_-_51972514_51972614	2.85844	UGUGCUU	BC011132|Satb1|20230|special AT-rich sequence binding protein 1	NM_001163632|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr4_+_54960816_54960816	2.85801	UGUGCUU	NM_172867|Zfp462|242466|zinc finger protein 462
mm9_v1_chr9_-_58050340_58050340	2.85779	UGUGCUU	NM_001161538|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2
mm9_v1_chr9_+_39999900_39999944	2.8333	UGUGCUU	AK172368|Zfp202|80902|zinc finger protein 202	NM_030713|Zfp202|80902|zinc finger protein 202	AF292648|Zfp202|80902|zinc finger protein 202	AF292649|Zfp202|80902|zinc finger protein 202	AK170181|Zfp202|80902|zinc finger protein 202
mm9_v1_chr15_-_84686558_84686558	2.79977	UGUGCUU	AK046530|Phf21b|271305|PHD finger protein 21B	NM_001081166|Phf21b|271305|PHD finger protein 21B
mm9_v1_chr1_+_63492447_63492511	2.74901	UGUGCUU	AK046677|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_001177600|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_011780|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK034022|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK083458|Adam23|23792|a disintegrin and metallopeptidase domain 23
mm9_v1_chr4_+_101091875_101091893	2.68172	UGUGCUU	AK134600|Ak4|11639|adenylate kinase 4	NM_001177602|Ak4|11639|adenylate kinase 4
mm9_v1_chr11_+_102146273_102146324	2.67523	UGUGCUU	AK132118|Tmub2|72053|transmembrane and ubiquitin-like domain containing 2	NM_028076|Tmub2|72053|transmembrane and ubiquitin-like domain containing 2	AK157408|Tmub2|72053|transmembrane and ubiquitin-like domain containing 2	BC016187|Tmub2|72053|transmembrane and ubiquitin-like domain containing 2	AK008158|Tmub2|72053|transmembrane and ubiquitin-like domain containing 2
mm9_v1_chr6_-_144157971_144158077	2.6116	UGUGCUU	BC110478|Sox5|20678|SRY-box containing gene 5	AK132307|Sox5|20678|SRY-box containing gene 5	AB006330|Sox5|20678|SRY-box containing gene 5	AJ010604|Sox5|20678|SRY-box containing gene 5	NM_001113559|Sox5|20678|SRY-box containing gene 5	NM_011444|Sox5|20678|SRY-box containing gene 5
mm9_v1_chr15_-_27955602_27955621	2.61028	UGUGCUU	NM_001081302|Trio|223435|triple functional domain (PTPRF interacting)
mm9_v1_chr17_+_34168703_34168796	2.60547	UGUGCUU	AK159671|Rxrb|20182|retinoid X receptor beta	AK013718|Rxrb|20182|retinoid X receptor beta	BC049773|Rxrb|20182|retinoid X receptor beta	NM_011306|Rxrb|20182|retinoid X receptor beta
mm9_v1_chr4_+_21703416_21703444	2.58291	UGUGCUU	AK040660|Usp45|77593|ubiquitin specific petidase 45	AK162825|Usp45|77593|ubiquitin specific petidase 45	NM_152825|Usp45|77593|ubiquitin specific petidase 45	AK088073|Usp45|77593|ubiquitin specific petidase 45	BC027768|Usp45|77593|ubiquitin specific petidase 45
mm9_v1_chr16_-_3872273_3872373	2.53813	UGUGCUU	AK016727|Zfp597|71063|zinc finger protein 597	NM_001033159|Zfp597|71063|zinc finger protein 597
mm9_v1_chr11_+_69715343_69715451	2.50119	UGUGCUU	NM_001013414|Neurl4|216860|neuralized homolog 4 (Drosophila)	AK157107|Neurl4|216860|neuralized homolog 4 (Drosophila)
mm9_v1_chr18_+_69504145_69504185	2.49941	UGUGCUU	AK051958|Tcf4|21413|transcription factor 4	NM_013685|Tcf4|21413|transcription factor 4	U16322|Tcf4|21413|transcription factor 4
mm9_v1_chr13_+_90229271_90229367	2.46117	UGUGCUU	NM_025335|Tmem167|66074|transmembrane protein 167	AK021263|Tmem167|66074|transmembrane protein 167	AK032474|Tmem167|66074|transmembrane protein 167	AK161037|Tmem167|66074|transmembrane protein 167	AK031706|Tmem167|66074|transmembrane protein 167	AK007966|Tmem167|66074|transmembrane protein 167	AK019962|Tmem167|66074|transmembrane protein 167	AK016036|Tmem167|66074|transmembrane protein 167	AK012161|Tmem167|66074|transmembrane protein 167	AK002884|Tmem167|66074|transmembrane protein 167	AK088895|Tmem167|66074|transmembrane protein 167	AK160704|Tmem167|66074|transmembrane protein 167	AK007771|Tmem167|66074|transmembrane protein 167	AK132361|Tmem167|66074|transmembrane protein 167	BC085489|Tmem167|66074|transmembrane protein 167
mm9_v1_chr11_-_30854081_30854140	2.4481	UGUGCUU	AK002471|Erlec1|66753|endoplasmic reticulum lectin 1	AK077120|Erlec1|66753|endoplasmic reticulum lectin 1	AK133874|Erlec1|66753|endoplasmic reticulum lectin 1	NM_025745|Erlec1|66753|endoplasmic reticulum lectin 1	BC018468|Erlec1|66753|endoplasmic reticulum lectin 1
mm9_v1_chr19_+_44368165_44368165	2.44292	UGUGCUU	AK147406|Scd2|20250|stearoyl-Coenzyme A desaturase 2	NM_009128|Scd2|20250|stearoyl-Coenzyme A desaturase 2
mm9_v1_chr7_-_149846916_149846939	2.43357	UGUGCUU	NM_001122736|Igf2|16002|insulin-like growth factor 2
mm9_v1_chr4_+_104829951_104829954	2.42663	UGUGCUU	AK011276|Ppap2b|67916|phosphatidic acid phosphatase type 2B	NM_080555|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr14_+_60884038_60884171	2.39526	UGUGCUU	AK076218|Mtmr6|219135|myotubularin related protein 6	NM_144843|Mtmr6|219135|myotubularin related protein 6	BC020019|Mtmr6|219135|myotubularin related protein 6	AK154859|Mtmr6|219135|myotubularin related protein 6
mm9_v1_chr11_-_54601163_54601250	2.38345	UGUGCUU	AK145931|Cdc42se2|72729|CDC42 small effector 2	AK160934|Cdc42se2|72729|CDC42 small effector 2	NM_178626|Cdc42se2|72729|CDC42 small effector 2
mm9_v1_chr15_+_85888136_85888136	2.35414	UGUGCUU	AK036832|Gramd4|223752|GRAM domain containing 4	BC139228|Gramd4|223752|GRAM domain containing 4	BC139229|Gramd4|223752|GRAM domain containing 4	NM_172611|Gramd4|223752|GRAM domain containing 4
mm9_v1_chr18_+_69505374_69505487	2.35286	UGUGCUU	NM_001083967|Tcf4|21413|transcription factor 4	AK081012|Tcf4|21413|transcription factor 4	AK145285|Tcf4|21413|transcription factor 4	AK028748|Tcf4|21413|transcription factor 4	S75870|Tcf4|21413|transcription factor 4
mm9_v1_chr7_-_137410321_137410321	2.31891	UGUGCUU	NM_010207|Fgfr2|14183|fibroblast growth factor receptor 2	NM_201601|Fgfr2|14183|fibroblast growth factor receptor 2
mm9_v1_chr10_+_89207730_89207982	2.30668	UGUGCUU	AK141050|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	NM_029166|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AB093261|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC030383|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK033300|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC132134|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC138092|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK087280|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like
mm9_v1_chr8_+_96334452_96334737	2.24617	UGUGCUU	AK160434|Gnao1|14681|guanine nucleotide binding protein, alpha O	AK035907|Gnao1|14681|guanine nucleotide binding protein, alpha O	NM_001113384|Gnao1|14681|guanine nucleotide binding protein, alpha O	NM_010308|Gnao1|14681|guanine nucleotide binding protein, alpha O
mm9_v1_chr11_-_20731016_20731238	2.23586	UGUGCUU	AK041053|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK167557|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	BC019131|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	NM_173752|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK156350|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene
mm9_v1_chr4_-_126106749_126106807	2.22938	UGUGCUU	AK035042|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK083652|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK171118|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK154436|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	NM_153402|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3
mm9_v1_chr6_-_56312803_56312803	2.22358	UGUGCUU	AK050499|Pde1c|18575|phosphodiesterase 1C	NM_001159960|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr10_-_77814444_77814444	2.1997	UGUGCUU	AK075715|Agpat3|28169|1-acylglycerol-3-phosphate O-acyltransferase 3	NM_053014|Agpat3|28169|1-acylglycerol-3-phosphate O-acyltransferase 3
mm9_v1_chr6_+_120314116_120314182	2.19116	UGUGCUU	AK041568|Kdm5a|214899|lysine (K)-specific demethylase 5A	NM_145997|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK166055|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK159079|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK144877|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK139619|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK046187|Kdm5a|214899|lysine (K)-specific demethylase 5A	BC011506|Kdm5a|214899|lysine (K)-specific demethylase 5A
mm9_v1_chr5_+_43624701_43624701	2.11995	UGUGCUU	NM_001177379|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2	NM_175937|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2
mm9_v1_chr7_-_6282035_6282035	2.0975	UGUGCUU	AK133380|Zfp583|213011|zinc finger protein 583	NM_001033249|Zfp583|213011|zinc finger protein 583
mm9_v1_chr17_+_74927634_74927745	1.94807	UGUGCUU	NM_007566|Birc6|12211|baculoviral IAP repeat-containing 6	Y17267|Birc6|12211|baculoviral IAP repeat-containing 6
mm9_v1_chr9_+_74800828_74800859	1.84555	UGUGCUU	BC060215|BC031353|235493|cDNA sequence BC031353	NM_001113283|BC031353|235493|cDNA sequence BC031353
mm9_v1_chr1_-_184271729_184271762	1.84506	UGUGCUU	BC094542|Fbxo28|67948|F-box protein 28	NM_175127|Fbxo28|67948|F-box protein 28	AK076211|Fbxo28|67948|F-box protein 28	AK077653|Fbxo28|67948|F-box protein 28
mm9_v1_chr2_-_153270059_153270214	1.83687	UGUGCUU	BC079552|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	AK157863|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	AK139459|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	NM_001001986|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene
mm9_v1_chr15_+_79921725_79921855	1.83047	UGUGCUU	BC138728|Syngr1|20972|synaptogyrin 1	BC138729|Syngr1|20972|synaptogyrin 1	NM_009303|Syngr1|20972|synaptogyrin 1	NM_207708|Syngr1|20972|synaptogyrin 1	AK044007|Syngr1|20972|synaptogyrin 1	AJ002306|Syngr1|20972|synaptogyrin 1	AK156134|Syngr1|20972|synaptogyrin 1	AK002972|Syngr1|20972|synaptogyrin 1	AK010442|Syngr1|20972|synaptogyrin 1	AK153096|Syngr1|20972|synaptogyrin 1	AK153187|Syngr1|20972|synaptogyrin 1	BC048172|Syngr1|20972|synaptogyrin 1	AK194549|Syngr1|20972|synaptogyrin 1
mm9_v1_chr1_-_194681914_194681945	1.82979	UGUGCUU	BC060251|Sertad4|214791|SERTA domain containing 4	NM_198247|Sertad4|214791|SERTA domain containing 4
mm9_v1_chr13_+_42147389_42147402	1.79896	UGUGCUU	AK039808|Hivep1|110521|human immunodeficiency virus type I enhancer binding protein 1	NM_007772|Hivep1|110521|human immunodeficiency virus type I enhancer binding protein 1
mm9_v1_chr10_+_127848671_127848731	1.78684	UGUGCUU	AK045760|Rnf41|67588|ring finger protein 41	NM_001164237|Rnf41|67588|ring finger protein 41	NM_026259|Rnf41|67588|ring finger protein 41	AK030558|Rnf41|67588|ring finger protein 41	BC049078|Rnf41|67588|ring finger protein 41	AF305730|Rnf41|67588|ring finger protein 41
mm9_v1_chr19_+_42164922_42164992	1.75204	UGUGCUU	NM_145501|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	AK030725|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	BC110363|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	BC089309|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha
mm9_v1_chr8_+_116963542_116963590	1.73532	UGUGCUU	NM_019573|Wwox|80707|WW domain-containing oxidoreductase
mm9_v1_chr2_+_76244578_76244594	1.72463	UGUGCUU	AK044411|Osbpl6|99031|oxysterol binding protein-like 6	NM_145525|Osbpl6|99031|oxysterol binding protein-like 6
mm9_v1_chr10_+_111409750_111409849	1.72378	UGUGCUU	NM_178610|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK012108|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK045526|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK036447|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK146926|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC089510|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK011972|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK030560|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK032472|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK041854|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK168675|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC094236|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr2_+_130732201_130732231	1.65294	UGUGCUU	AK155069|Atrn|11990|attractin	AF116897|Atrn|11990|attractin	NM_009730|Atrn|11990|attractin
mm9_v1_chr14_+_12386043_12386066	1.59383	UGUGCUU	BC079595|Ptprg|19270|protein tyrosine phosphatase, receptor type, G	NM_008981|Ptprg|19270|protein tyrosine phosphatase, receptor type, G
mm9_v1_chr3_+_51287887_51287937	1.58443	UGUGCUU	BC065076|Rab33b|19338|RAB33B, member of RAS oncogene family	NM_016858|Rab33b|19338|RAB33B, member of RAS oncogene family	AK163783|Rab33b|19338|RAB33B, member of RAS oncogene family	AK139821|Rab33b|19338|RAB33B, member of RAS oncogene family	AB004665|Rab33b|19338|RAB33B, member of RAS oncogene family
mm9_v1_chr5_+_122608248_122608342	1.57328	UGUGCUU	AK147131|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	NM_013636|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	BC021646|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK152422|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK169336|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform
mm9_v1_chr2_+_3201446_3201559	1.52097	UGUGCUU	AK161490|Nmt2|18108|N-myristoyltransferase 2	AK168171|Nmt2|18108|N-myristoyltransferase 2	AK168190|Nmt2|18108|N-myristoyltransferase 2	AK134521|Nmt2|18108|N-myristoyltransferase 2	AK044213|Nmt2|18108|N-myristoyltransferase 2	AF043327|Nmt2|18108|N-myristoyltransferase 2	BC037647|Nmt2|18108|N-myristoyltransferase 2	NM_008708|Nmt2|18108|N-myristoyltransferase 2
mm9_v1_chr6_-_24614975_24615061	1.49133	UGUGCUU	AK143969|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	AK014104|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	BC058642|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	NM_001167745|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	NM_028459|Wasl|73178|Wiskott-Aldrich syndrome-like (human)
mm9_v1_chr3_-_30868320_30868353	1.46367	UGUGCUU	BC132533|Phc3|241915|polyhomeotic-like 3 (Drosophila)	BC145123|Phc3|241915|polyhomeotic-like 3 (Drosophila)	BC145124|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AJ414610|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK037348|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK087339|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK166208|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK166296|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165954|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165955|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165956|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_153421|Phc3|241915|polyhomeotic-like 3 (Drosophila)
mm9_v1_chr12_+_86451782_86451862	1.45994	UGUGCUU	AK158877|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	NM_030225|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK019713|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK149664|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK168570|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK171100|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK028513|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK047270|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK054053|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK169943|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	BC006702|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	CT010197|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
mm9_v1_chr11_+_32542845_32542890	1.36231	UGUGCUU	AK166226|Fbxw11|103583|F-box and WD-40 domain protein 11	BC034261|Fbxw11|103583|F-box and WD-40 domain protein 11	NM_134015|Fbxw11|103583|F-box and WD-40 domain protein 11	AK178514|Fbxw11|103583|F-box and WD-40 domain protein 11	AK179454|Fbxw11|103583|F-box and WD-40 domain protein 11	AY038079|Fbxw11|103583|F-box and WD-40 domain protein 11
mm9_v1_chr12_+_81745188_81745226	1.34628	UGUGCUU	NM_026244|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9	AK090062|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9	AK080462|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9	BC072655|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9	AK008025|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9
mm9_v1_chr5_+_108494692_108494781	1.33844	UGUGCUU	AK031409|Mtf2|17765|metal response element binding transcription factor 2	BC024889|Mtf2|17765|metal response element binding transcription factor 2	AK032798|Mtf2|17765|metal response element binding transcription factor 2	AK032819|Mtf2|17765|metal response element binding transcription factor 2	AK137539|Mtf2|17765|metal response element binding transcription factor 2	BC050826|Mtf2|17765|metal response element binding transcription factor 2	AK030752|Mtf2|17765|metal response element binding transcription factor 2	AB050541|Mtf2|17765|metal response element binding transcription factor 2	BC092237|Mtf2|17765|metal response element binding transcription factor 2	NM_013827|Mtf2|17765|metal response element binding transcription factor 2	BC100340|Mtf2|17765|metal response element binding transcription factor 2	BC029076|Mtf2|17765|metal response element binding transcription factor 2
mm9_v1_chr16_-_56029770_56029852	1.31452	UGUGCUU	AK150595|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK145195|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK152279|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC106192|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC061235|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK159201|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC023320|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK168723|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK166071|Pcnp|76302|PEST proteolytic signal containing nuclear protein	NM_001024622|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC132588|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC132590|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC145194|Pcnp|76302|PEST proteolytic signal containing nuclear protein
mm9_v1_chr2_+_71050002_71050098	1.31373	UGUGCUU	NM_001198877|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	NM_001198878|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	NM_010064|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AK168730|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AK088015|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AK135477|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	GU992211|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	GU992212|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AF063231|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2
mm9_v1_chr11_+_97223851_97223864	1.27264	UGUGCUU	AF424814|Socs7|192157|suppressor of cytokine signaling 7	NM_138657|Socs7|192157|suppressor of cytokine signaling 7
mm9_v1_chr9_-_24956272_24956327	1.26938	UGUGCUU	AK135935|Herpud2|80517|HERPUD family member 2	NM_020586|Herpud2|80517|HERPUD family member 2	BC043693|Herpud2|80517|HERPUD family member 2
mm9_v1_chr5_+_122298977_122299040	1.23981	UGUGCUU	AK039192|Fam109a|231717|family with sequence similarity 109, member A	AK033618|Fam109a|231717|family with sequence similarity 109, member A	NM_175474|Fam109a|231717|family with sequence similarity 109, member A
mm9_v1_chr2_+_163820920_163821078	1.23945	UGUGCUU	AK150414|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK151294|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK004872|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK011389|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	NM_018753|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AF058797|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK083367|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK158932|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK204033|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC132121|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC138512|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chrX_+_72661966_72662056	1.23618	UGUGCUU	NM_001166457|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	NM_001166459|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	NM_145956|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	S68022|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK149844|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK028483|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK030736|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	BC021313|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK038919|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK011876|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	BC048179|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3
mm9_v1_chr15_+_6658368_6658402	1.21375	UGUGCUU	AK029196|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK036149|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK036492|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK082586|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK087858|Rictor|78757|RPTOR independent companion of MTOR, complex 2	NM_030168|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AY540053|Rictor|78757|RPTOR independent companion of MTOR, complex 2	BC120903|Rictor|78757|RPTOR independent companion of MTOR, complex 2	BC120904|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK019537|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK054119|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AY497009|Rictor|78757|RPTOR independent companion of MTOR, complex 2
mm9_v1_chr19_+_45005608_45005655	1.18191	UGUGCUU	NM_001081225|Fam178a|226151|family with sequence similarity 178, member A	AK031688|Fam178a|226151|family with sequence similarity 178, member A	AK147588|Fam178a|226151|family with sequence similarity 178, member A	AK020064|Fam178a|226151|family with sequence similarity 178, member A	AK045983|Fam178a|226151|family with sequence similarity 178, member A
mm9_v1_chr6_-_56312170_56312512	1.18109	UGUGCUU	AK082497|Pde1c|18575|phosphodiesterase 1C	BC032277|Pde1c|18575|phosphodiesterase 1C	AK139923|Pde1c|18575|phosphodiesterase 1C	AK017183|Pde1c|18575|phosphodiesterase 1C	AK082180|Pde1c|18575|phosphodiesterase 1C	AK030423|Pde1c|18575|phosphodiesterase 1C	NM_001025568|Pde1c|18575|phosphodiesterase 1C	NM_001159952|Pde1c|18575|phosphodiesterase 1C	NM_001159953|Pde1c|18575|phosphodiesterase 1C	L76946|Pde1c|18575|phosphodiesterase 1C	NM_011054|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr8_+_28153013_28153055	1.17378	UGUGCUU	NM_001039077|Prosc|114863|proline synthetase co-transcribed	NM_001039078|Prosc|114863|proline synthetase co-transcribed	NM_054057|Prosc|114863|proline synthetase co-transcribed	BC061045|Prosc|114863|proline synthetase co-transcribed	AK147670|Prosc|114863|proline synthetase co-transcribed
mm9_v1_chr6_-_56319574_56319627	1.16528	UGUGCUU	AK077123|Pde1c|18575|phosphodiesterase 1C	AK015375|Pde1c|18575|phosphodiesterase 1C	AK014887|Pde1c|18575|phosphodiesterase 1C	AK133243|Pde1c|18575|phosphodiesterase 1C	AK029531|Pde1c|18575|phosphodiesterase 1C	NM_001159955|Pde1c|18575|phosphodiesterase 1C	NM_001159956|Pde1c|18575|phosphodiesterase 1C	NM_001159957|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr9_+_59426108_59426143	1.0941	UGUGCUU	BC052406|Celf6|76183|CUGBP, Elav-like family member 6	NM_175235|Celf6|76183|CUGBP, Elav-like family member 6
mm9_v1_chr2_+_71049762_71049900	1.00405	UGUGCUU	NM_001198872|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	NM_001198873|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	NM_001198874|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	NM_001198875|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	NM_001198876|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AK019441|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AK141837|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AK150173|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AK164322|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	AK164437|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	GU992208|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	GU992209|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2	GU992210|Dync1i2|13427|dynein cytoplasmic 1 intermediate chain 2
mm9_v1_chr19_-_59150558_59150589	1.00139	UGUGCUU	AK082304|4930506M07Rik|71653|RIKEN cDNA 4930506M07 gene	NM_001114312|4930506M07Rik|71653|RIKEN cDNA 4930506M07 gene	NM_175172|4930506M07Rik|71653|RIKEN cDNA 4930506M07 gene	AK220405|4930506M07Rik|71653|RIKEN cDNA 4930506M07 gene
mm9_v1_chr13_+_24730516_24730581	0.945331	UGUGCUU	NM_001080381|Fam65b|193385|family with sequence similarity 65, member B	NM_029679|Fam65b|193385|family with sequence similarity 65, member B	AK039271|Fam65b|193385|family with sequence similarity 65, member B	AK031928|Fam65b|193385|family with sequence similarity 65, member B	AK163880|Fam65b|193385|family with sequence similarity 65, member B
mm9_v1_chr5_+_75971011_75971052	0.926766	UGUGCUU	NM_001122733|Kit|16590|kit oncogene	NM_021099|Kit|16590|kit oncogene	AK046795|Kit|16590|kit oncogene	AK047010|Kit|16590|kit oncogene	BC026713|Kit|16590|kit oncogene	BC075716|Kit|16590|kit oncogene	BC052457|Kit|16590|kit oncogene	Y00864|Kit|16590|kit oncogene	AY536430|Kit|16590|kit oncogene	AY536431|Kit|16590|kit oncogene
mm9_v1_chrX_+_23270202_23270284	0.810036	UGUGCUU	AK049071|Wdr44|72404|WD repeat domain 44	AK088885|Wdr44|72404|WD repeat domain 44	BC068151|Wdr44|72404|WD repeat domain 44	NM_175180|Wdr44|72404|WD repeat domain 44	BC049191|Wdr44|72404|WD repeat domain 44	AK011669|Wdr44|72404|WD repeat domain 44
mm9_v1_chr8_-_41596638_41596711	0.766064	UGUGCUU	AK044535|Cnot7|18983|CCR4-NOT transcription complex, subunit 7	NM_011135|Cnot7|18983|CCR4-NOT transcription complex, subunit 7
mm9_v1_chrX_-_57400778_57400876	0.663304	UGUGCUU	BC125435|Mcf2|109904|mcf.2 transforming sequence	AB052945|Mcf2|109904|mcf.2 transforming sequence	AB101616|Mcf2|109904|mcf.2 transforming sequence	NM_133197|Mcf2|109904|mcf.2 transforming sequence	AK032122|Mcf2|109904|mcf.2 transforming sequence
mm9_v1_chrX_+_68617918_68617964	0.647045	UGUGCUU	BC056376|Mtmr1|53332|myotubularin related protein 1	NM_016985|Mtmr1|53332|myotubularin related protein 1	BC057337|Mtmr1|53332|myotubularin related protein 1	AF073997|Mtmr1|53332|myotubularin related protein 1
mm9_v1_chr10_-_94407211_94407349	0.643421	UGUGCUU	AF190578|Plxnc1|54712|plexin C1	NM_018797|Plxnc1|54712|plexin C1
mm9_v1_chr13_-_24372584_24372663	0.60878	UGUGCUU	BC150819|Lrrc16a|68732|leucine rich repeat containing 16A	AK051570|Lrrc16a|68732|leucine rich repeat containing 16A	NM_026825|Lrrc16a|68732|leucine rich repeat containing 16A	AY437876|Lrrc16a|68732|leucine rich repeat containing 16A
mm9_v1_chr18_+_35758269_35758376	0.590318	UGUGCUU	AK146327|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK167545|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK169207|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK169411|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK154453|Paip2|67869|polyadenylate-binding protein-interacting protein 2	BC010190|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK150957|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK005462|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK009909|Paip2|67869|polyadenylate-binding protein-interacting protein 2	NM_026420|Paip2|67869|polyadenylate-binding protein-interacting protein 2
mm9_v1_chr7_-_128850659_128850766	0.586938	UGUGCUU	NM_001033173|Usp31|76179|ubiquitin specific peptidase 31
mm9_v1_chr7_-_149843316_149843387	0.580903	UGUGCUU	M14951|Igf2|16002|insulin-like growth factor 2	BC058615|Igf2|16002|insulin-like growth factor 2	BC053489|Igf2|16002|insulin-like growth factor 2	NM_001122737|Igf2|16002|insulin-like growth factor 2
mm9_v1_chr3_-_100489393_100489406	0.569561	UGUGCUU	AK153336|Man1a2|17156|mannosidase, alpha, class 1A, member 2	NM_010763|Man1a2|17156|mannosidase, alpha, class 1A, member 2
mm9_v1_chr10_-_13108775_13108775	0.545499	UGUGCUU	AK139466|Phactr2|215789|phosphatase and actin regulator 2	NM_001195066|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr11_-_101828286_101828333	0.508609	UGUGCUU	AF326740|Sost|74499|sclerostin	BC137832|Sost|74499|sclerostin	BC137833|Sost|74499|sclerostin	AK017295|Sost|74499|sclerostin	AK041382|Sost|74499|sclerostin	NM_024449|Sost|74499|sclerostin
mm9_v1_chr1_-_181734145_181734145	0.455923	UGUGCUU	NM_026375|Ahctf1|226747|AT hook containing transcription factor 1
mm9_v1_chr11_+_105898183_105898284	0.429096	UGUGCUU	AK047435|Dcaf7|71833|DDB1 and CUL4 associated factor 7	NM_027946|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK005902|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK154757|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK165674|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK080823|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK137813|Dcaf7|71833|DDB1 and CUL4 associated factor 7	BC048722|Dcaf7|71833|DDB1 and CUL4 associated factor 7	BC048165|Dcaf7|71833|DDB1 and CUL4 associated factor 7
mm9_v1_chr7_-_149844708_149844708	0.378952	UGUGCUU	NM_010514|Igf2|16002|insulin-like growth factor 2
mm9_v1_chr8_+_24085309_24085353	0.353362	UGUGCUU	AK158131|Ank1|11733|ankyrin 1, erythroid	AK147278|Ank1|11733|ankyrin 1, erythroid	NM_001110783|Ank1|11733|ankyrin 1, erythroid
mm9_v1_chr4_+_33219530_33219530	0.34715	UGUGCUU	AF024620|Gabrr1|14408|gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	NM_008075|Gabrr1|14408|gamma-aminobutyric acid (GABA) C receptor, subunit rho 1
mm9_v1_chrX_-_45944937_45944938	0.342812	UGUGCUU	BC051397|Zfp280c|208968|zinc finger protein 280C	NM_001166650|Zfp280c|208968|zinc finger protein 280C	BC028839|Zfp280c|208968|zinc finger protein 280C
mm9_v1_chr3_-_88265103_88265103	0.315781	UGUGCUU	NM_001163489|Sema4a|20351|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	X85991|Sema4a|20351|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm9_v1_chr14_-_49686341_49686379	0.308072	UGUGCUU	NM_207214|Exoc5|105504|exocyst complex component 5
mm9_v1_chr1_+_44176812_44176851	0.267223	UGUGCUU	AK047404|Bivm|246229|basic, immunoglobulin-like variable motif containing	NM_144558|Bivm|246229|basic, immunoglobulin-like variable motif containing	AK032375|Bivm|246229|basic, immunoglobulin-like variable motif containing	AK034329|Bivm|246229|basic, immunoglobulin-like variable motif containing
mm9_v1_chr8_+_127316918_127316991	0.246174	UGUGCUU	AK051455|Trim67|330863|tripartite motif-containing 67	NM_198632|Trim67|330863|tripartite motif-containing 67	BC094596|Trim67|330863|tripartite motif-containing 67
mm9_v1_chr8_-_61390372_61390423	0.240668	UGUGCUU	BC111102|Galntl6|270049|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6	AK080614|Galntl6|270049|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6	NM_175032|Galntl6|270049|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
mm9_v1_chr17_-_46841925_46841975	0.23026	UGUGCUU	AK154050|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform	NM_009358|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform
mm9_v1_chr1_-_167564449_167564681	0.211747	UGUGCUU	AK192253|Mpzl1|68481|myelin protein zero-like 1	AK192408|Mpzl1|68481|myelin protein zero-like 1	AK193736|Mpzl1|68481|myelin protein zero-like 1	AK197743|Mpzl1|68481|myelin protein zero-like 1	AY764248|Mpzl1|68481|myelin protein zero-like 1	BC072563|Mpzl1|68481|myelin protein zero-like 1	AK090278|Mpzl1|68481|myelin protein zero-like 1	AK169385|Mpzl1|68481|myelin protein zero-like 1	AY764247|Mpzl1|68481|myelin protein zero-like 1	NM_001001880|Mpzl1|68481|myelin protein zero-like 1	NM_001083897|Mpzl1|68481|myelin protein zero-like 1
mm9_v1_chr9_+_44142772_44142803	0.210053	UGUGCUU	AK088040|H2afx|15270|H2A histone family, member X	AK008124|H2afx|15270|H2A histone family, member X	X58069|H2afx|15270|H2A histone family, member X	BC010336|H2afx|15270|H2A histone family, member X	NM_010436|H2afx|15270|H2A histone family, member X	BC005468|H2afx|15270|H2A histone family, member X
mm9_v1_chr19_+_38911056_38911166	0.182554	UGUGCUU	AK172979|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	NM_145952|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC138056|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC138057|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC145129|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12
mm9_v1_chr15_-_36724292_36724292	0.166864	UGUGCUU	NM_011740|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr19_+_54018795_54018795	0.140042	UGUGCUU	BC083060|Shoc2|56392|soc-2 (suppressor of clear) homolog (C. elegans)	NM_001168505|Shoc2|56392|soc-2 (suppressor of clear) homolog (C. elegans)
mm9_v1_chr1_-_97564139_97564174	0.117222	UGUGCUU	BC060112|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	AJ223956|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_001159745|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_009183|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	X86000|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm9_v1_chrX_+_137212566_137212566	0.0814971	UGUGCUU	AF196480|Mid2|23947|midline 2	NM_011845|Mid2|23947|midline 2
mm9_v1_chr19_-_11271212_11271226	0.0563641	UGUGCUU	BC089483|Ms4a13|73466|membrane-spanning 4-domains, subfamily A, member 13	NM_198224|Ms4a13|73466|membrane-spanning 4-domains, subfamily A, member 13	AF544402|Ms4a13|73466|membrane-spanning 4-domains, subfamily A, member 13	AK006841|Ms4a13|73466|membrane-spanning 4-domains, subfamily A, member 13
mm9_v1_chr13_-_94269616_94269653	0.00691717	UGUGCUU	BC069906|Jmy|57748|junction-mediating and regulatory protein	BC090835|Jmy|57748|junction-mediating and regulatory protein	NM_021310|Jmy|57748|junction-mediating and regulatory protein
mm9_v1_chr5_-_22056086_22056211	0.00612554	UGUGCUU	AK166537|Orc5|26429|origin recognition complex, subunit 5	AK169683|Orc5|26429|origin recognition complex, subunit 5	AJ007360|Orc5|26429|origin recognition complex, subunit 5	AK144983|Orc5|26429|origin recognition complex, subunit 5	NM_011959|Orc5|26429|origin recognition complex, subunit 5	AK165912|Orc5|26429|origin recognition complex, subunit 5	BC006927|Orc5|26429|origin recognition complex, subunit 5	AK084683|Orc5|26429|origin recognition complex, subunit 5
