mm9_v1_chr8_+_56040080_56040120	35.6281	UUGGUCC	NM_153581|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr6_+_22825464_22825502	30.65	UUGGUCC	AK081698|Ptprz1|19283|protein tyrosine phosphatase, receptor type Z, polypeptide 1	NM_001081306|Ptprz1|19283|protein tyrosine phosphatase, receptor type Z, polypeptide 1
mm9_v1_chr2_-_115890747_115890848	30.3482	UUGGUCC	U68383|Meis2|17536|Meis homeobox 2	U68384|Meis2|17536|Meis homeobox 2	AJ000504|Meis2|17536|Meis homeobox 2	AJ000505|Meis2|17536|Meis homeobox 2	AJ000506|Meis2|17536|Meis homeobox 2	AJ000507|Meis2|17536|Meis homeobox 2	AK146633|Meis2|17536|Meis homeobox 2	NM_001136072|Meis2|17536|Meis homeobox 2	NM_001159567|Meis2|17536|Meis homeobox 2	NM_001159568|Meis2|17536|Meis homeobox 2	NM_010825|Meis2|17536|Meis homeobox 2	BC017375|Meis2|17536|Meis homeobox 2
mm9_v1_chr2_-_115890247_115890356	30.3112	UUGGUCC	AK158513|Meis2|17536|Meis homeobox 2	AK158839|Meis2|17536|Meis homeobox 2	NM_001159569|Meis2|17536|Meis homeobox 2	NM_001159570|Meis2|17536|Meis homeobox 2
mm9_v1_chr3_-_57651621_57651757	29.4426	UUGGUCC	NM_019410|Pfn2|18645|profilin 2
mm9_v1_chr3_+_52845429_52845504	27.3424	UUGGUCC	BC052079|Lhfp|108927|lipoma HMGIC fusion partner	NM_175386|Lhfp|108927|lipoma HMGIC fusion partner	AK159549|Lhfp|108927|lipoma HMGIC fusion partner	AK159126|Lhfp|108927|lipoma HMGIC fusion partner	AK171791|Lhfp|108927|lipoma HMGIC fusion partner	AK172390|Lhfp|108927|lipoma HMGIC fusion partner	AK172532|Lhfp|108927|lipoma HMGIC fusion partner	BC095934|Lhfp|108927|lipoma HMGIC fusion partner
mm9_v1_chr3_-_126646303_126646303	26.7835	UUGGUCC	BC043123|Ank2|109676|ankyrin 2, brain	NM_001034168|Ank2|109676|ankyrin 2, brain
mm9_v1_chr2_-_130468507_130468540	24.5852	UUGGUCC	AK161711|Prosapip1|241638|ProSAPiP1 protein	AK148251|Prosapip1|241638|ProSAPiP1 protein	NM_197945|Prosapip1|241638|ProSAPiP1 protein
mm9_v1_chr6_+_114232618_114232629	24.544	UUGGUCC	NM_178703|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm9_v1_chr15_-_90880241_90880381	24.427	UUGGUCC	AF202892|Kif21a|16564|kinesin family member 21A	BC060698|Kif21a|16564|kinesin family member 21A	BC062896|Kif21a|16564|kinesin family member 21A	AK163536|Kif21a|16564|kinesin family member 21A	AK047880|Kif21a|16564|kinesin family member 21A	AK147436|Kif21a|16564|kinesin family member 21A	AK008213|Kif21a|16564|kinesin family member 21A	AK047350|Kif21a|16564|kinesin family member 21A	NM_001109040|Kif21a|16564|kinesin family member 21A	NM_001109041|Kif21a|16564|kinesin family member 21A	NM_001109042|Kif21a|16564|kinesin family member 21A	NM_016705|Kif21a|16564|kinesin family member 21A	AK019525|Kif21a|16564|kinesin family member 21A
mm9_v1_chr18_-_25912453_25912483	23.981	UUGGUCC	AK161918|Celf4|108013|CUGBP, Elav-like family member 4	BC048405|Celf4|108013|CUGBP, Elav-like family member 4	BC052744|Celf4|108013|CUGBP, Elav-like family member 4	NM_001146292|Celf4|108013|CUGBP, Elav-like family member 4	NM_001146293|Celf4|108013|CUGBP, Elav-like family member 4	NM_001146294|Celf4|108013|CUGBP, Elav-like family member 4	NM_001146295|Celf4|108013|CUGBP, Elav-like family member 4	NM_001174074|Celf4|108013|CUGBP, Elav-like family member 4	NM_133195|Celf4|108013|CUGBP, Elav-like family member 4
mm9_v1_chr7_-_134164627_134164726	23.1391	UUGGUCC	NM_001102563|Prrt2|69017|proline-rich transmembrane protein 2
mm9_v1_chr4_-_75779379_75779379	22.9241	UUGGUCC	AF326559|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	AF326560|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	NM_001014288|Ptprd|19266|protein tyrosine phosphatase, receptor type, D
mm9_v1_chr13_-_25029458_25029547	22.661	UUGGUCC	AK051603|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	BC138703|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK159485|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK166313|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK144030|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK052703|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	NM_172532|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1
mm9_v1_chr1_+_66515003_66515020	22.6089	UUGGUCC	AK043914|Unc80|329178|unc-80 homolog (C. elegans)	FJ210934|Unc80|329178|unc-80 homolog (C. elegans)	NM_175510|Unc80|329178|unc-80 homolog (C. elegans)
mm9_v1_chr2_+_138082301_138082378	22.6015	UUGGUCC	NM_001025431|Btbd3|228662|BTB (POZ) domain containing 3	AK052530|Btbd3|228662|BTB (POZ) domain containing 3	AK161924|Btbd3|228662|BTB (POZ) domain containing 3
mm9_v1_chr4_-_76240202_76240202	22.2822	UUGGUCC	BC086654|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	NM_011211|Ptprd|19266|protein tyrosine phosphatase, receptor type, D
mm9_v1_chrX_-_92361778_92361824	21.6987	UUGGUCC	AK038840|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	AK122280|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	AK139416|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	NM_001033329|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9
mm9_v1_chr2_+_138104219_138104260	21.4223	UUGGUCC	AB093275|Btbd3|228662|BTB (POZ) domain containing 3	NM_145534|Btbd3|228662|BTB (POZ) domain containing 3	BC018174|Btbd3|228662|BTB (POZ) domain containing 3
mm9_v1_chr10_+_24315247_24315401	21.3189	UUGGUCC	NM_010217|Ctgf|14219|connective tissue growth factor	BC006783|Ctgf|14219|connective tissue growth factor	M80263|Ctgf|14219|connective tissue growth factor	M70642|Ctgf|14219|connective tissue growth factor
mm9_v1_chr3_-_126701367_126701380	21.0084	UUGGUCC	AK032060|Ank2|109676|ankyrin 2, brain	NM_178655|Ank2|109676|ankyrin 2, brain
mm9_v1_chr15_+_87455659_87455659	20.6379	UUGGUCC	AY325124|Fam19a5|106014|family with sequence similarity 19, member A5	BC015306|Fam19a5|106014|family with sequence similarity 19, member A5	NM_134096|Fam19a5|106014|family with sequence similarity 19, member A5
mm9_v1_chr4_+_122860705_122860828	20.0689	UUGGUCC	AK032591|Hpcal4|170638|hippocalcin-like 4	NM_174998|Hpcal4|170638|hippocalcin-like 4
mm9_v1_chr10_-_83111346_83111470	17.5905	UUGGUCC	BC048906|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK171512|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK168748|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK168403|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK160105|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK160075|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AY113706|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	NM_145220|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK161003|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK154525|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2
mm9_v1_chr4_+_84851330_84851416	17.2565	UUGGUCC	AK044370|Sh3gl2|20404|SH3-domain GRB2-like 2	BC018385|Sh3gl2|20404|SH3-domain GRB2-like 2	NM_019535|Sh3gl2|20404|SH3-domain GRB2-like 2	AK043424|Sh3gl2|20404|SH3-domain GRB2-like 2	AK139337|Sh3gl2|20404|SH3-domain GRB2-like 2	U58886|Sh3gl2|20404|SH3-domain GRB2-like 2
mm9_v1_chr7_+_94732677_94732677	17.1664	UUGGUCC	NM_001081414|Grm5|108071|glutamate receptor, metabotropic 5	NM_001143834|Grm5|108071|glutamate receptor, metabotropic 5
mm9_v1_chr16_-_28753276_28753293	17.0105	UUGGUCC	BC030485|Fgf12|14167|fibroblast growth factor 12	AF020739|Fgf12|14167|fibroblast growth factor 12	NM_010199|Fgf12|14167|fibroblast growth factor 12
mm9_v1_chr6_-_126595818_126595818	16.396	UUGGUCC	NM_010595|Kcna1|16485|potassium voltage-gated channel, shaker-related subfamily, member 1
mm9_v1_chr1_+_168184269_168184413	16.1583	UUGGUCC	NM_001164528|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024494|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024495|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024496|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024497|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024498|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024499|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024500|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024501|Ildr2|100039795|immunoglobulin-like domain containing receptor 2
mm9_v1_chr12_+_50483869_50483993	16.1097	UUGGUCC	AK132305|Foxg1|15228|forkhead box G1	NM_001160112|Foxg1|15228|forkhead box G1	NM_008241|Foxg1|15228|forkhead box G1	U36760|Foxg1|15228|forkhead box G1
mm9_v1_chr11_+_78002249_78002305	16.0162	UUGGUCC	NM_033475|Rab34|19376|RAB34, member of RAS oncogene family	BC028481|Rab34|19376|RAB34, member of RAS oncogene family	AK160308|Rab34|19376|RAB34, member of RAS oncogene family
mm9_v1_chr16_-_10314010_10314073	15.9675	UUGGUCC	AK076194|Emp2|13731|epithelial membrane protein 2	AK077260|Emp2|13731|epithelial membrane protein 2	NM_007929|Emp2|13731|epithelial membrane protein 2
mm9_v1_chr18_-_39078304_39078358	15.4663	UUGGUCC	U67610|Fgf1|14164|fibroblast growth factor 1	AK035330|Fgf1|14164|fibroblast growth factor 1	NM_010197|Fgf1|14164|fibroblast growth factor 1
mm9_v1_chr10_-_70622370_70622639	15.4475	UUGGUCC	AF319464|Bicc1|83675|bicaudal C homolog 1 (Drosophila)	BC111523|Bicc1|83675|bicaudal C homolog 1 (Drosophila)	NM_031397|Bicc1|83675|bicaudal C homolog 1 (Drosophila)	AK076154|Bicc1|83675|bicaudal C homolog 1 (Drosophila)
mm9_v1_chr11_+_78001871_78001989	15.429	UUGGUCC	NM_001159482|Rab34|19376|RAB34, member of RAS oncogene family	AF327929|Rab34|19376|RAB34, member of RAS oncogene family
mm9_v1_chr7_-_112788821_112788929	15.0774	UUGGUCC	BC028310|Arfip2|76932|ADP-ribosylation factor interacting protein 2	BC013794|Arfip2|76932|ADP-ribosylation factor interacting protein 2	BC022942|Arfip2|76932|ADP-ribosylation factor interacting protein 2	AK009100|Arfip2|76932|ADP-ribosylation factor interacting protein 2	AK154772|Arfip2|76932|ADP-ribosylation factor interacting protein 2	NM_029802|Arfip2|76932|ADP-ribosylation factor interacting protein 2
mm9_v1_chr10_-_108447674_108447736	14.985	UUGGUCC	BC042519|Syt1|20979|synaptotagmin I	NM_009306|Syt1|20979|synaptotagmin I
mm9_v1_chr6_+_129483206_129483210	14.7836	UUGGUCC	AK018687|Gabarapl1|57436|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1	BC024706|Gabarapl1|57436|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1	NM_020590|Gabarapl1|57436|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
mm9_v1_chr2_+_157385835_157385932	14.6769	UUGGUCC	AK003004|Nnat|18111|neuronatin	AK077465|Nnat|18111|neuronatin	AK160626|Nnat|18111|neuronatin	NM_010923|Nnat|18111|neuronatin	NM_180960|Nnat|18111|neuronatin	X83569|Nnat|18111|neuronatin	X83570|Nnat|18111|neuronatin	BC036984|Nnat|18111|neuronatin	AB004048|Nnat|18111|neuronatin	X83568|Nnat|18111|neuronatin
mm9_v1_chr6_+_110595586_110595619	14.6136	UUGGUCC	BC080315|Grm7|108073|glutamate receptor, metabotropic 7	NM_177328|Grm7|108073|glutamate receptor, metabotropic 7
mm9_v1_chr5_+_64040341_64040341	14.5586	UUGGUCC	AK033855|3110047P20Rik|319807|RIKEN cDNA 3110047P20 gene	NM_177006|3110047P20Rik|319807|RIKEN cDNA 3110047P20 gene
mm9_v1_chr3_+_95985065_95985205	14.4757	UUGGUCC	AK080525|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK144166|Sv2a|64051|synaptic vesicle glycoprotein 2 a	BC046587|Sv2a|64051|synaptic vesicle glycoprotein 2 a	NM_022030|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK080502|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK028318|Sv2a|64051|synaptic vesicle glycoprotein 2 a
mm9_v1_chr10_+_106708886_106708980	14.3391	UUGGUCC	NM_001033223|Lin7a|108030|lin-7 homolog A (C. elegans)	NM_001039354|Lin7a|108030|lin-7 homolog A (C. elegans)	BC105965|Lin7a|108030|lin-7 homolog A (C. elegans)	AK160671|Lin7a|108030|lin-7 homolog A (C. elegans)	BC029721|Lin7a|108030|lin-7 homolog A (C. elegans)
mm9_v1_chr16_+_35155621_35155721	14.309	UUGGUCC	AK147590|Adcy5|224129|adenylate cyclase 5	AK160942|Adcy5|224129|adenylate cyclase 5	NM_001012765|Adcy5|224129|adenylate cyclase 5
mm9_v1_chr5_+_73872293_73872293	14.0027	UUGGUCC	AK076991|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_001190734|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr2_+_29658139_29658348	13.2502	UUGGUCC	AK170377|Slc27a4|26569|solute carrier family 27 (fatty acid transporter), member 4	AK036919|Slc27a4|26569|solute carrier family 27 (fatty acid transporter), member 4	NM_011989|Slc27a4|26569|solute carrier family 27 (fatty acid transporter), member 4	AK155313|Slc27a4|26569|solute carrier family 27 (fatty acid transporter), member 4	AK155388|Slc27a4|26569|solute carrier family 27 (fatty acid transporter), member 4	AK196043|Slc27a4|26569|solute carrier family 27 (fatty acid transporter), member 4	BC023114|Slc27a4|26569|solute carrier family 27 (fatty acid transporter), member 4
mm9_v1_chr10_+_21712008_21712034	13.0598	UUGGUCC	NM_001161849|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr10_+_21698470_21698479	13.0171	UUGGUCC	NM_001161847|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr1_-_188529867_188529872	12.8014	UUGGUCC	X57413|Tgfb2|21808|transforming growth factor, beta 2	NM_009367|Tgfb2|21808|transforming growth factor, beta 2
mm9_v1_chr4_+_44025481_44025515	12.6868	UUGGUCC	NM_001080384|Clta|12757|clathrin, light polypeptide (Lca)	NM_001080385|Clta|12757|clathrin, light polypeptide (Lca)	NM_001080386|Clta|12757|clathrin, light polypeptide (Lca)	NM_016760|Clta|12757|clathrin, light polypeptide (Lca)
mm9_v1_chr11_-_90252228_90252237	12.6843	UUGGUCC	NM_172563|Hlf|217082|hepatic leukemia factor
mm9_v1_chr9_-_54349409_54349432	12.5177	UUGGUCC	AK170274|Dmxl2|235380|Dmx-like 2	AK048831|Dmxl2|235380|Dmx-like 2	AK053672|Dmxl2|235380|Dmx-like 2	NM_172771|Dmxl2|235380|Dmx-like 2
mm9_v1_chr13_-_64471609_64471618	12.1465	UUGGUCC	AK011589|Ctsl|13039|cathepsin L	AK147142|Ctsl|13039|cathepsin L	AK002221|Ctsl|13039|cathepsin L	AK049466|Ctsl|13039|cathepsin L	AK145051|Ctsl|13039|cathepsin L	AK150452|Ctsl|13039|cathepsin L	AK151169|Ctsl|13039|cathepsin L	AK153076|Ctsl|13039|cathepsin L	AK153417|Ctsl|13039|cathepsin L	AK159511|Ctsl|13039|cathepsin L	AK160100|Ctsl|13039|cathepsin L	AK161538|Ctsl|13039|cathepsin L	AK165397|Ctsl|13039|cathepsin L	AK169394|Ctsl|13039|cathepsin L	NM_009984|Ctsl|13039|cathepsin L	AK169712|Ctsl|13039|cathepsin L
mm9_v1_chr3_-_119486305_119486325	11.9168	UUGGUCC	AK135738|Ptbp2|56195|polypyrimidine tract binding protein 2	NM_019550|Ptbp2|56195|polypyrimidine tract binding protein 2
mm9_v1_chr5_+_73882264_73882364	11.7505	UUGGUCC	NM_001190733|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_178896|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	AK033559|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137627|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137628|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC144794|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC060213|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC108346|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr15_-_37722161_37722182	11.7192	UUGGUCC	AK048440|Ncald|52589|neurocalcin delta	NM_134094|Ncald|52589|neurocalcin delta
mm9_v1_chr16_-_28445276_28445356	11.4606	UUGGUCC	U66201|Fgf12|14167|fibroblast growth factor 12	AK034335|Fgf12|14167|fibroblast growth factor 12	NM_183064|Fgf12|14167|fibroblast growth factor 12	AF020738|Fgf12|14167|fibroblast growth factor 12
mm9_v1_chr9_-_110649625_110649648	11.4571	UUGGUCC	BC013446|Pth1r|19228|parathyroid hormone 1 receptor	NM_011199|Pth1r|19228|parathyroid hormone 1 receptor
mm9_v1_chr15_+_38908403_38908501	11.4259	UUGGUCC	AK090258|Cthrc1|68588|collagen triple helix repeat containing 1	AK076498|Cthrc1|68588|collagen triple helix repeat containing 1	AK151282|Cthrc1|68588|collagen triple helix repeat containing 1	NM_026778|Cthrc1|68588|collagen triple helix repeat containing 1	AK003674|Cthrc1|68588|collagen triple helix repeat containing 1	BC131907|Cthrc1|68588|collagen triple helix repeat containing 1	BC144745|Cthrc1|68588|collagen triple helix repeat containing 1
mm9_v1_chr15_-_37721754_37721786	11.3975	UUGGUCC	NM_001170866|Ncald|52589|neurocalcin delta
mm9_v1_chr8_-_74195650_74195661	11.353	UUGGUCC	NM_001029873|Unc13a|382018|unc-13 homolog A (C. elegans)	AK035920|Unc13a|382018|unc-13 homolog A (C. elegans)
mm9_v1_chr19_+_45089665_45089708	11.2093	UUGGUCC	NM_145503|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK169936|Lzts2|226154|leucine zipper, putative tumor suppressor 2	BC092263|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK144154|Lzts2|226154|leucine zipper, putative tumor suppressor 2	NM_001130525|Lzts2|226154|leucine zipper, putative tumor suppressor 2
mm9_v1_chr10_+_21714471_21714488	11.2028	UUGGUCC	NM_011361|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK086892|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK146037|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK159131|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr15_-_66801198_66801204	11.1436	UUGGUCC	AK170439|Ndrg1|17988|N-myc downstream regulated gene 1	AK004548|Ndrg1|17988|N-myc downstream regulated gene 1	AK098075|Ndrg1|17988|N-myc downstream regulated gene 1	AK161860|Ndrg1|17988|N-myc downstream regulated gene 1	AK165007|Ndrg1|17988|N-myc downstream regulated gene 1	AK170281|Ndrg1|17988|N-myc downstream regulated gene 1	AK170636|Ndrg1|17988|N-myc downstream regulated gene 1	U60593|Ndrg1|17988|N-myc downstream regulated gene 1	AK170809|Ndrg1|17988|N-myc downstream regulated gene 1	NM_008681|Ndrg1|17988|N-myc downstream regulated gene 1
mm9_v1_chr1_-_194677940_194677940	11.0617	UUGGUCC	NM_001177794|Sertad4|214791|SERTA domain containing 4
mm9_v1_chr10_+_21705909_21705909	10.9923	UUGGUCC	NM_001161848|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr19_-_10315199_10315247	10.512	UUGGUCC	BC157942|Gm98|225908|predicted gene 98	AK031485|Gm98|225908|predicted gene 98	AK141695|Gm98|225908|predicted gene 98	NM_001033481|Gm98|225908|predicted gene 98
mm9_v1_chr8_-_70342105_70342226	10.2891	UUGGUCC	BC131913|Psd3|234353|pleckstrin and Sec7 domain containing 3	BC145641|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK031477|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK147606|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_027626|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr6_+_86799460_86799754	10.2252	UUGGUCC	AK147363|Aak1|269774|AP2 associated kinase 1	NM_001040106|Aak1|269774|AP2 associated kinase 1	NM_177762|Aak1|269774|AP2 associated kinase 1	AK158879|Aak1|269774|AP2 associated kinase 1	BC141176|Aak1|269774|AP2 associated kinase 1
mm9_v1_chr11_+_68902025_68902081	10.158	UUGGUCC	BC055105|Vamp2|22318|vesicle-associated membrane protein 2	NM_009497|Vamp2|22318|vesicle-associated membrane protein 2	BC039745|Vamp2|22318|vesicle-associated membrane protein 2	U60150|Vamp2|22318|vesicle-associated membrane protein 2
mm9_v1_chr17_+_6106829_6106853	10.1394	UUGGUCC	NM_001103181|Tulp4|68842|tubby like protein 4
mm9_v1_chr15_-_37389073_37389150	10.1262	UUGGUCC	BC026979|Ncald|52589|neurocalcin delta	AK167313|Ncald|52589|neurocalcin delta	AK034031|Ncald|52589|neurocalcin delta	NM_001170867|Ncald|52589|neurocalcin delta	NM_001170868|Ncald|52589|neurocalcin delta
mm9_v1_chr7_-_116925058_116925063	10.0116	UUGGUCC	AK020731|Nrip3|78593|nuclear receptor interacting protein 3	AK083130|Nrip3|78593|nuclear receptor interacting protein 3	NM_020610|Nrip3|78593|nuclear receptor interacting protein 3
mm9_v1_chr3_+_141128527_141128634	9.57848	UUGGUCC	NM_009472|Unc5c|22253|unc-5 homolog C (C. elegans)	U72634|Unc5c|22253|unc-5 homolog C (C. elegans)	BC115772|Unc5c|22253|unc-5 homolog C (C. elegans)	AK031655|Unc5c|22253|unc-5 homolog C (C. elegans)	AK034558|Unc5c|22253|unc-5 homolog C (C. elegans)	AK035038|Unc5c|22253|unc-5 homolog C (C. elegans)	AK045251|Unc5c|22253|unc-5 homolog C (C. elegans)	AK141181|Unc5c|22253|unc-5 homolog C (C. elegans)	AK142411|Unc5c|22253|unc-5 homolog C (C. elegans)	AK164239|Unc5c|22253|unc-5 homolog C (C. elegans)	AK142974|Unc5c|22253|unc-5 homolog C (C. elegans)
mm9_v1_chr10_+_21601968_21601989	9.54374	UUGGUCC	BC070401|Sgk1|20393|serum/glucocorticoid regulated kinase 1	NM_001161845|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr3_-_152003317_152003373	9.51235	UUGGUCC	BC138328|Fam73a|215708|family with sequence similarity 73, member A	BC138329|Fam73a|215708|family with sequence similarity 73, member A	AK166051|Fam73a|215708|family with sequence similarity 73, member A	BC059928|Fam73a|215708|family with sequence similarity 73, member A	AK044739|Fam73a|215708|family with sequence similarity 73, member A	BC098205|Fam73a|215708|family with sequence similarity 73, member A	AK045347|Fam73a|215708|family with sequence similarity 73, member A	AK143366|Fam73a|215708|family with sequence similarity 73, member A	AK085017|Fam73a|215708|family with sequence similarity 73, member A	NM_001162375|Fam73a|215708|family with sequence similarity 73, member A	NM_174868|Fam73a|215708|family with sequence similarity 73, member A
mm9_v1_chr6_-_85283412_85283433	9.49984	UUGGUCC	AK036285|Sfxn5|94282|sideroflexin 5	AK043706|Sfxn5|94282|sideroflexin 5	AK082073|Sfxn5|94282|sideroflexin 5	AK038793|Sfxn5|94282|sideroflexin 5	NM_178639|Sfxn5|94282|sideroflexin 5
mm9_v1_chr10_-_31165691_31165726	9.43155	UUGGUCC	AF004428|Tpd52l1|21987|tumor protein D52-like 1	NM_009413|Tpd52l1|21987|tumor protein D52-like 1
mm9_v1_chr1_-_194681914_194681945	9.38963	UUGGUCC	BC060251|Sertad4|214791|SERTA domain containing 4	NM_198247|Sertad4|214791|SERTA domain containing 4
mm9_v1_chr15_-_34424979_34425004	9.33207	UUGGUCC	NM_008287|Hrsp12|15473|heat-responsive protein 12
mm9_v1_chr3_-_32981940_32981960	9.32744	UUGGUCC	AB032591|Pex5l|58869|peroxisomal biogenesis factor 5-like	AK039764|Pex5l|58869|peroxisomal biogenesis factor 5-like	NM_021483|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr3_+_133903056_133903111	9.3075	UUGGUCC	NM_001004367|Cxxc4|319478|CXXC finger 4
mm9_v1_chr10_+_21713669_21713695	9.24115	UUGGUCC	NM_001161850|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr10_+_105907394_105907408	9.1495	UUGGUCC	BC065133|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	EU568870|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	NM_177373|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK030621|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK220491|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm9_v1_chr4_-_82151180_82151288	9.11352	UUGGUCC	AK034793|Nfib|18028|nuclear factor I/B	Y07686|Nfib|18028|nuclear factor I/B	AK146480|Nfib|18028|nuclear factor I/B	NM_001113209|Nfib|18028|nuclear factor I/B	NM_001113210|Nfib|18028|nuclear factor I/B	NM_008687|Nfib|18028|nuclear factor I/B	AK034261|Nfib|18028|nuclear factor I/B	AK087480|Nfib|18028|nuclear factor I/B	AK084941|Nfib|18028|nuclear factor I/B
mm9_v1_chr1_+_155500166_155500298	8.97983	UUGGUCC	NM_026380|Rgs8|67792|regulator of G-protein signaling 8	BC065056|Rgs8|67792|regulator of G-protein signaling 8	AK044337|Rgs8|67792|regulator of G-protein signaling 8	AK142301|Rgs8|67792|regulator of G-protein signaling 8
mm9_v1_chr13_+_31898501_31898514	8.97185	UUGGUCC	BC027689|Foxc1|17300|forkhead box C1	NM_008592|Foxc1|17300|forkhead box C1
mm9_v1_chr4_+_13711928_13711928	8.89997	UUGGUCC	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr17_+_75578120_75578285	8.77212	UUGGUCC	AK036047|Ltbp1|268977|latent transforming growth factor beta binding protein 1	NM_206958|Ltbp1|268977|latent transforming growth factor beta binding protein 1	AF280604|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chr8_+_26629214_26629332	8.73849	UUGGUCC	NM_001079908|Fgfr1|14182|fibroblast growth factor receptor 1	NM_001079909|Fgfr1|14182|fibroblast growth factor receptor 1	NM_010206|Fgfr1|14182|fibroblast growth factor receptor 1	AK049704|Fgfr1|14182|fibroblast growth factor receptor 1	S74765|Fgfr1|14182|fibroblast growth factor receptor 1	BC010200|Fgfr1|14182|fibroblast growth factor receptor 1
mm9_v1_chr13_+_54472705_54472742	8.55103	UUGGUCC	NM_009946|Cplx2|12890|complexin 2
mm9_v1_chr6_-_112897259_112897274	8.5017	UUGGUCC	AK045508|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	AK051262|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	NM_080448|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3
mm9_v1_chr18_+_64414012_64414029	8.15693	UUGGUCC	AK161482|St8sia3|20451|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	NM_009182|St8sia3|20451|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	AK015874|St8sia3|20451|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
mm9_v1_chr9_-_113935832_113935880	8.08087	UUGGUCC	AK013142|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK089994|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145665|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145998|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK045742|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC096582|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK141177|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK163472|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK044693|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK039010|Fbxl2|72179|F-box and leucine-rich repeat protein 2	NM_178624|Fbxl2|72179|F-box and leucine-rich repeat protein 2
mm9_v1_chr8_-_106966899_106966946	8.06811	UUGGUCC	BC058645|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK050575|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	NM_001013380|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2
mm9_v1_chr7_+_106683983_106683997	7.96164	UUGGUCC	AK147508|Arrb1|109689|arrestin, beta 1	NM_177231|Arrb1|109689|arrestin, beta 1	NM_178220|Arrb1|109689|arrestin, beta 1
mm9_v1_chr4_+_13670425_13670448	7.83304	UUGGUCC	AK142006|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_001111026|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr12_+_12268901_12269011	7.57919	UUGGUCC	NM_001146119|Fam49a|76820|family with sequence similarity 49, member A	NM_029758|Fam49a|76820|family with sequence similarity 49, member A	AK047142|Fam49a|76820|family with sequence similarity 49, member A	BC049664|Fam49a|76820|family with sequence similarity 49, member A
mm9_v1_chr3_-_32884000_32884000	7.5016	UUGGUCC	AK006035|Pex5l|58869|peroxisomal biogenesis factor 5-like	NM_001163517|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr15_-_76648532_76648614	7.45631	UUGGUCC	AK173232|Arhgap39|223666|Rho GTPase activating protein 39	AK141623|Arhgap39|223666|Rho GTPase activating protein 39	BC060637|Arhgap39|223666|Rho GTPase activating protein 39	NM_001168288|Arhgap39|223666|Rho GTPase activating protein 39	NM_198420|Arhgap39|223666|Rho GTPase activating protein 39
mm9_v1_chr8_-_85966482_85966569	7.07079	UUGGUCC	NM_019708|Scoc|56367|short coiled-coil protein
mm9_v1_chr2_+_173563060_173563229	7.02357	UUGGUCC	BC048231|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	NM_019806|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	BC057123|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK050632|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK081908|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AF115504|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK160925|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK172080|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chrX_+_99044723_99044723	6.96798	UUGGUCC	AK142977|Nhsl2|100042480|NHS-like 2	NM_001163610|Nhsl2|100042480|NHS-like 2
mm9_v1_chr1_+_193541845_193542002	6.87988	UUGGUCC	AK133814|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	NM_172266|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1
mm9_v1_chr11_+_53333270_53333474	6.84486	UUGGUCC	BC059248|Sept8|20362|septin 8	NM_033144|Sept8|20362|septin 8	AB093215|Sept8|20362|septin 8	AK144178|Sept8|20362|septin 8	BC049819|Sept8|20362|septin 8	BC037707|Sept8|20362|septin 8
mm9_v1_chr2_-_152657417_152657458	6.8325	UUGGUCC	BC089016|Bcl2l1|12048|BCL2-like 1	NM_009743|Bcl2l1|12048|BCL2-like 1
mm9_v1_chr19_-_46647546_46647639	6.82485	UUGGUCC	BC042941|Arl3|56350|ADP-ribosylation factor-like 3	NM_019718|Arl3|56350|ADP-ribosylation factor-like 3	AK048644|Arl3|56350|ADP-ribosylation factor-like 3
mm9_v1_chr2_+_121692687_121692705	6.65265	UUGGUCC	BC064446|Casc4|319996|cancer susceptibility candidate 4	NM_177054|Casc4|319996|cancer susceptibility candidate 4	NM_199038|Casc4|319996|cancer susceptibility candidate 4
mm9_v1_chr2_+_163428044_163428072	6.57726	UUGGUCC	AK039450|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_029512|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_181734|Ttpal|76080|tocopherol (alpha) transfer protein-like
mm9_v1_chr1_+_193542261_193542399	6.42195	UUGGUCC	NM_001134829|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	AK172914|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	BC013667|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1
mm9_v1_chr5_-_151992724_151992782	6.34227	UUGGUCC	AK148227|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	AK050259|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	NM_001163493|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	NM_146258|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	BC027830|Stard13|243362|StAR-related lipid transfer (START) domain containing 13
mm9_v1_chr8_-_70434808_70434844	6.33331	UUGGUCC	BC052365|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK161498|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_030263|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr5_-_37087204_37087208	6.30651	UUGGUCC	AK033480|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed	NM_001081232|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed
mm9_v1_chr1_-_65233043_65233054	6.30618	UUGGUCC	NM_001111320|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble
mm9_v1_chr6_-_58974400_58974495	6.29161	UUGGUCC	BC005554|Fam13a|58909|family with sequence similarity 13, member A	BC060978|Fam13a|58909|family with sequence similarity 13, member A	AK052421|Fam13a|58909|family with sequence similarity 13, member A	BC054053|Fam13a|58909|family with sequence similarity 13, member A	AJ510136|Fam13a|58909|family with sequence similarity 13, member A	AK054311|Fam13a|58909|family with sequence similarity 13, member A	BC080861|Fam13a|58909|family with sequence similarity 13, member A	NM_153574|Fam13a|58909|family with sequence similarity 13, member A
mm9_v1_chr5_+_67651890_67652024	6.20454	UUGGUCC	AK012413|Tmem33|67878|transmembrane protein 33	NM_028975|Tmem33|67878|transmembrane protein 33	NM_030108|Tmem33|67878|transmembrane protein 33	AK032555|Tmem33|67878|transmembrane protein 33	AK005493|Tmem33|67878|transmembrane protein 33	AK007750|Tmem33|67878|transmembrane protein 33	AK017281|Tmem33|67878|transmembrane protein 33	AK153441|Tmem33|67878|transmembrane protein 33	AK007607|Tmem33|67878|transmembrane protein 33	BC005562|Tmem33|67878|transmembrane protein 33	AK165369|Tmem33|67878|transmembrane protein 33
mm9_v1_chr3_+_105255247_105255337	6.19489	UUGGUCC	NM_001039347|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AK147574|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr12_+_30622876_30622919	6.19353	UUGGUCC	AK142872|Pxdn|69675|peroxidasin homolog (Drosophila)	NM_181395|Pxdn|69675|peroxidasin homolog (Drosophila)	BC150789|Pxdn|69675|peroxidasin homolog (Drosophila)	AK054255|Pxdn|69675|peroxidasin homolog (Drosophila)	AK163597|Pxdn|69675|peroxidasin homolog (Drosophila)
mm9_v1_chr3_-_80606704_80606756	6.14616	UUGGUCC	AK163941|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK046861|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_001039195|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_001083806|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_013540|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK014389|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm9_v1_chr13_+_54723144_54723248	6.14357	UUGGUCC	NM_178397|Faf2|76577|Fas associated factor family member 2	AK170111|Faf2|76577|Fas associated factor family member 2	AK171922|Faf2|76577|Fas associated factor family member 2	AK051724|Faf2|76577|Fas associated factor family member 2	BC046817|Faf2|76577|Fas associated factor family member 2	AK148529|Faf2|76577|Fas associated factor family member 2	AK151617|Faf2|76577|Fas associated factor family member 2	BC048767|Faf2|76577|Fas associated factor family member 2	AK122394|Faf2|76577|Fas associated factor family member 2
mm9_v1_chr5_+_143722032_143722059	6.13991	UUGGUCC	NM_007984|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	AK083935|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	AK167670|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	BC052408|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	BC029281|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	BC010338|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	BC037137|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	L33726|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)
mm9_v1_chr8_-_85982247_85982289	6.09318	UUGGUCC	AK002521|Scoc|56367|short coiled-coil protein	BC147069|Scoc|56367|short coiled-coil protein	NM_001039137|Scoc|56367|short coiled-coil protein
mm9_v1_chr17_+_6138147_6138147	6.07694	UUGGUCC	AK173165|Tulp4|68842|tubby like protein 4	NM_054040|Tulp4|68842|tubby like protein 4
mm9_v1_chr16_-_85901362_85901374	6.01706	UUGGUCC	NM_011782|Adamts5|23794|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm9_v1_chr5_-_113739711_113739807	6.01587	UUGGUCC	BC138049|Sgsm1|52850|small G protein signaling modulator 1	BC138050|Sgsm1|52850|small G protein signaling modulator 1	AK053555|Sgsm1|52850|small G protein signaling modulator 1	AK044716|Sgsm1|52850|small G protein signaling modulator 1	AK170021|Sgsm1|52850|small G protein signaling modulator 1	NM_001162965|Sgsm1|52850|small G protein signaling modulator 1	NM_172718|Sgsm1|52850|small G protein signaling modulator 1
mm9_v1_chr5_+_14514906_14514924	5.99605	UUGGUCC	NM_001110796|Pclo|26875|piccolo (presynaptic cytomatrix protein)	NM_011995|Pclo|26875|piccolo (presynaptic cytomatrix protein)	Y19185|Pclo|26875|piccolo (presynaptic cytomatrix protein)	Y19186|Pclo|26875|piccolo (presynaptic cytomatrix protein)
mm9_v1_chr11_-_86807216_86807263	5.91299	UUGGUCC	NM_001005341|Ypel2|77864|yippee-like 2 (Drosophila)
mm9_v1_chr9_-_110645089_110645113	5.85312	UUGGUCC	NM_001083936|Pth1r|19228|parathyroid hormone 1 receptor
mm9_v1_chr7_+_129432585_129432762	5.84478	UUGGUCC	NM_008855|Prkcb|18751|protein kinase C, beta	AK051862|Prkcb|18751|protein kinase C, beta
mm9_v1_chrX_-_9240025_9240132	5.81802	UUGGUCC	BC030032|Dynlt3|67117|dynein light chain Tctex-type 3	AK010186|Dynlt3|67117|dynein light chain Tctex-type 3	AK018842|Dynlt3|67117|dynein light chain Tctex-type 3	AK088277|Dynlt3|67117|dynein light chain Tctex-type 3	NM_025975|Dynlt3|67117|dynein light chain Tctex-type 3
mm9_v1_chr17_+_75404865_75404880	5.81634	UUGGUCC	NM_019919|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chr6_-_72566993_72566993	5.65753	UUGGUCC	AK076586|Tgoln1|22134|trans-golgi network protein	NM_009443|Tgoln1|22134|trans-golgi network protein
mm9_v1_chr9_+_44925922_44925963	5.65181	UUGGUCC	NM_001014761|Scn2b|72821|sodium channel, voltage-gated, type II, beta	AB118947|Scn2b|72821|sodium channel, voltage-gated, type II, beta	BC092225|Scn2b|72821|sodium channel, voltage-gated, type II, beta
mm9_v1_chr14_+_84843366_84843370	5.64021	UUGGUCC	AK142358|Pcdh17|219228|protocadherin 17	AK147265|Pcdh17|219228|protocadherin 17	NM_001013753|Pcdh17|219228|protocadherin 17
mm9_v1_chr16_-_14159346_14159388	5.59613	UUGGUCC	AK158881|4921513D23Rik|223989|RIKEN cDNA 4921513D23 gene	NM_001081154|4921513D23Rik|223989|RIKEN cDNA 4921513D23 gene
mm9_v1_chr6_-_90760116_90760132	5.46276	UUGGUCC	NM_001134384|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr13_+_98011057_98011069	5.43923	UUGGUCC	AK132173|Enc1|13803|ectodermal-neural cortex 1	NM_007930|Enc1|13803|ectodermal-neural cortex 1	AK044906|Enc1|13803|ectodermal-neural cortex 1	AK049187|Enc1|13803|ectodermal-neural cortex 1
mm9_v1_chr2_+_109731003_109731053	5.43832	UUGGUCC	AK135810|Lin7c|22343|lin-7 homolog C (C. elegans)	AK083299|Lin7c|22343|lin-7 homolog C (C. elegans)	AK015399|Lin7c|22343|lin-7 homolog C (C. elegans)	AK078923|Lin7c|22343|lin-7 homolog C (C. elegans)	AK128989|Lin7c|22343|lin-7 homolog C (C. elegans)	BC052471|Lin7c|22343|lin-7 homolog C (C. elegans)	AK133531|Lin7c|22343|lin-7 homolog C (C. elegans)	AF173083|Lin7c|22343|lin-7 homolog C (C. elegans)	AF087695|Lin7c|22343|lin-7 homolog C (C. elegans)	BC046966|Lin7c|22343|lin-7 homolog C (C. elegans)	NM_011699|Lin7c|22343|lin-7 homolog C (C. elegans)	AK161076|Lin7c|22343|lin-7 homolog C (C. elegans)
mm9_v1_chr19_+_46836085_46836138	5.42515	UUGGUCC	AK053711|Cnnm2|94219|cyclin M2	AK159616|Cnnm2|94219|cyclin M2	AK044400|Cnnm2|94219|cyclin M2	NM_001102471|Cnnm2|94219|cyclin M2	NM_033569|Cnnm2|94219|cyclin M2	BC012956|Cnnm2|94219|cyclin M2	AK032006|Cnnm2|94219|cyclin M2
mm9_v1_chr16_-_37385024_37385045	5.42447	UUGGUCC	AK043658|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114611|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114612|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114613|Stxbp5l|207227|syntaxin binding protein 5-like	NM_172440|Stxbp5l|207227|syntaxin binding protein 5-like
mm9_v1_chr9_+_75862772_75862821	5.41628	UUGGUCC	BC037381|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	NM_173731|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	AK141622|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	AK164164|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1
mm9_v1_chr11_-_44283916_44284049	5.41499	UUGGUCC	AK015910|Ublcp1|79560|ubiquitin-like domain containing CTD phosphatase 1	AK172546|Ublcp1|79560|ubiquitin-like domain containing CTD phosphatase 1	AK043952|Ublcp1|79560|ubiquitin-like domain containing CTD phosphatase 1	AK050031|Ublcp1|79560|ubiquitin-like domain containing CTD phosphatase 1	AK153998|Ublcp1|79560|ubiquitin-like domain containing CTD phosphatase 1	AK147744|Ublcp1|79560|ubiquitin-like domain containing CTD phosphatase 1	NM_024475|Ublcp1|79560|ubiquitin-like domain containing CTD phosphatase 1
mm9_v1_chr10_-_61693963_61693977	5.3483	UUGGUCC	AK012471|Tspan15|70423|tetraspanin 15	NM_197996|Tspan15|70423|tetraspanin 15	AK172169|Tspan15|70423|tetraspanin 15
mm9_v1_chr6_+_55286292_55286439	5.34452	UUGGUCC	NM_007472|Aqp1|11826|aquaporin 1	AK081886|Aqp1|11826|aquaporin 1	AK086688|Aqp1|11826|aquaporin 1	AK128905|Aqp1|11826|aquaporin 1	AK157333|Aqp1|11826|aquaporin 1	AK158226|Aqp1|11826|aquaporin 1	AK158389|Aqp1|11826|aquaporin 1	AK166280|Aqp1|11826|aquaporin 1	AK171627|Aqp1|11826|aquaporin 1	AK172361|Aqp1|11826|aquaporin 1	L02914|Aqp1|11826|aquaporin 1	BC007125|Aqp1|11826|aquaporin 1
mm9_v1_chr10_-_114238419_114238425	5.33886	UUGGUCC	BC032288|Trhde|237553|TRH-degrading enzyme	AK085724|Trhde|237553|TRH-degrading enzyme	NM_146241|Trhde|237553|TRH-degrading enzyme
mm9_v1_chr14_-_70607443_70607553	5.31756	UUGGUCC	AF064806|Sorbs3|20410|sorbin and SH3 domain containing 3	NM_011366|Sorbs3|20410|sorbin and SH3 domain containing 3
mm9_v1_chrX_+_12164878_12165013	5.16026	UUGGUCC	NM_027439|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AK168139|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AK076495|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AK017482|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AK151735|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AK029405|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AB192471|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	BC014706|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2
mm9_v1_chr9_-_110645968_110646189	5.13335	UUGGUCC	X78936|Pth1r|19228|parathyroid hormone 1 receptor	NM_001083935|Pth1r|19228|parathyroid hormone 1 receptor
mm9_v1_chr13_+_93614714_93614741	5.08207	UUGGUCC	AK090249|Mtx3|382793|metaxin 3	NM_001162945|Mtx3|382793|metaxin 3
mm9_v1_chr17_+_93598761_93598761	4.98147	UUGGUCC	BC057344|Adcyap1|11516|adenylate cyclase activating polypeptide 1	NM_009625|Adcyap1|11516|adenylate cyclase activating polypeptide 1
mm9_v1_chr18_+_37915375_37915594	4.95241	UUGGUCC	BC064675|Pcdhga11|93723|protocadherin gamma subfamily A, 11	NM_033594|Pcdhga11|93723|protocadherin gamma subfamily A, 11	BC059837|Pcdhga11|93723|protocadherin gamma subfamily A, 11	AY013794|Pcdhga11|93723|protocadherin gamma subfamily A, 11
mm9_v1_chr6_+_137359231_137359310	4.89785	UUGGUCC	NM_001164402|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	NM_001164403|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	U37465|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	U37466|Ptpro|19277|protein tyrosine phosphatase, receptor type, O
mm9_v1_chr18_+_37906739_37906841	4.87977	UUGGUCC	AY013793|Pcdhga10|93722|protocadherin gamma subfamily A, 10	NM_033593|Pcdhga10|93722|protocadherin gamma subfamily A, 10
mm9_v1_chr18_+_37844927_37845053	4.87783	UUGGUCC	BC049814|Pcdhga4|93712|protocadherin gamma subfamily A, 4	AY013798|Pcdhga4|93712|protocadherin gamma subfamily A, 4	NM_033587|Pcdhga4|93712|protocadherin gamma subfamily A, 4
mm9_v1_chr2_+_83652846_83652884	4.86693	UUGGUCC	AK052508|Fam171b|241520|family with sequence similarity 171, member B	BC113787|Fam171b|241520|family with sequence similarity 171, member B	NM_175514|Fam171b|241520|family with sequence similarity 171, member B
mm9_v1_chr6_+_57652448_57652452	4.8504	UUGGUCC	NM_133737|Lancl2|71835|LanC (bacterial lantibiotic synthetase component C)-like 2
mm9_v1_chr1_+_134314029_134314184	4.84414	UUGGUCC	NM_172516|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AK083696|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AY429676|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AK020880|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	BC130226|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AK132119|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AK172954|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AY208852|Dstyk|213452|dual serine/threonine and tyrosine protein kinase	AK145449|Dstyk|213452|dual serine/threonine and tyrosine protein kinase
mm9_v1_chr4_+_97444312_97444317	4.83185	UUGGUCC	NM_001122953|Nfia|18027|nuclear factor I/A	NM_010905|Nfia|18027|nuclear factor I/A
mm9_v1_chr18_-_6135924_6136095	4.82485	UUGGUCC	AK031648|Arhgap12|75415|Rho GTPase activating protein 12	AK012717|Arhgap12|75415|Rho GTPase activating protein 12	AK077063|Arhgap12|75415|Rho GTPase activating protein 12	NM_001039692|Arhgap12|75415|Rho GTPase activating protein 12	NM_029277|Arhgap12|75415|Rho GTPase activating protein 12
mm9_v1_chr1_-_136131981_136132033	4.82122	UUGGUCC	NM_001008533|Adora1|11539|adenosine A1 receptor	AK038774|Adora1|11539|adenosine A1 receptor	NM_001039510|Adora1|11539|adenosine A1 receptor	AK134532|Adora1|11539|adenosine A1 receptor
mm9_v1_chr18_+_37833939_37833988	4.79981	UUGGUCC	BC060691|Pcdhga3|93711|protocadherin gamma subfamily A, 3	NM_033586|Pcdhga3|93711|protocadherin gamma subfamily A, 3
mm9_v1_chr18_+_37828606_37828758	4.77461	UUGGUCC	AB093250|Pcdhga2|93710|protocadherin gamma subfamily A, 2	BC139178|Pcdhga2|93710|protocadherin gamma subfamily A, 2	AY013796|Pcdhga2|93710|protocadherin gamma subfamily A, 2	NM_033585|Pcdhga2|93710|protocadherin gamma subfamily A, 2
mm9_v1_chr18_+_37966017_37966102	4.73667	UUGGUCC	AK089310|Pcdhgc3|93706|protocadherin gamma subfamily C, 3	BC059175|Pcdhgc3|93706|protocadherin gamma subfamily C, 3	NM_033581|Pcdhgc3|93706|protocadherin gamma subfamily C, 3	BC098457|Pcdhgc3|93706|protocadherin gamma subfamily C, 3
mm9_v1_chr19_+_3708309_3708410	4.73048	UUGGUCC	AK007868|1810055G02Rik|72056|RIKEN cDNA 1810055G02 gene	NM_028077|1810055G02Rik|72056|RIKEN cDNA 1810055G02 gene	AK154828|1810055G02Rik|72056|RIKEN cDNA 1810055G02 gene	BC019471|1810055G02Rik|72056|RIKEN cDNA 1810055G02 gene
mm9_v1_chrX_+_7305654_7305720	4.72812	UUGGUCC	BC064757|Praf2|54637|PRA1 domain family 2	AK003344|Praf2|54637|PRA1 domain family 2	AK224918|Praf2|54637|PRA1 domain family 2	NM_138602|Praf2|54637|PRA1 domain family 2	AF229636|Praf2|54637|PRA1 domain family 2
mm9_v1_chr16_-_38713106_38713149	4.7239	UUGGUCC	NM_020260|Arhgap31|12549|Rho GTPase activating protein 31
mm9_v1_chr18_+_37890662_37890807	4.71026	UUGGUCC	BC057403|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	AK156301|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	AY013807|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	NM_033577|Pcdhgb5|93702|protocadherin gamma subfamily B, 5
mm9_v1_chr19_+_45092581_45092707	4.67838	UUGGUCC	NM_001130526|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK081367|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK129446|Lzts2|226154|leucine zipper, putative tumor suppressor 2
mm9_v1_chr18_+_37885359_37885546	4.65503	UUGGUCC	BC054787|Pcdhga8|93716|protocadherin gamma subfamily A, 8	NM_033591|Pcdhga8|93716|protocadherin gamma subfamily A, 8	BC054555|Pcdhga8|93716|protocadherin gamma subfamily A, 8	AK220461|Pcdhga8|93716|protocadherin gamma subfamily A, 8	AY013802|Pcdhga8|93716|protocadherin gamma subfamily A, 8
mm9_v1_chrX_-_72823345_72823551	4.58127	UUGGUCC	AB232636|Rab39b|67790|RAB39B, member RAS oncogene family	BC052472|Rab39b|67790|RAB39B, member RAS oncogene family	AK039013|Rab39b|67790|RAB39B, member RAS oncogene family	AK048981|Rab39b|67790|RAB39B, member RAS oncogene family	AK160737|Rab39b|67790|RAB39B, member RAS oncogene family	NM_175122|Rab39b|67790|RAB39B, member RAS oncogene family	AK018257|Rab39b|67790|RAB39B, member RAS oncogene family	AK020665|Rab39b|67790|RAB39B, member RAS oncogene family
mm9_v1_chr19_-_24299471_24299519	4.5774	UUGGUCC	NM_011597|Tjp2|21873|tight junction protein 2
mm9_v1_chr18_+_37901716_37901894	4.54252	UUGGUCC	BC054556|Pcdhgb6|93703|protocadherin gamma subfamily B, 6	NM_033578|Pcdhgb6|93703|protocadherin gamma subfamily B, 6	AY013808|Pcdhgb6|93703|protocadherin gamma subfamily B, 6
mm9_v1_chr11_+_32542845_32542890	4.5092	UUGGUCC	AK166226|Fbxw11|103583|F-box and WD-40 domain protein 11	BC034261|Fbxw11|103583|F-box and WD-40 domain protein 11	NM_134015|Fbxw11|103583|F-box and WD-40 domain protein 11	AK178514|Fbxw11|103583|F-box and WD-40 domain protein 11	AK179454|Fbxw11|103583|F-box and WD-40 domain protein 11	AY038079|Fbxw11|103583|F-box and WD-40 domain protein 11
mm9_v1_chrX_-_161764912_161765057	4.49856	UUGGUCC	BC056342|Glra2|237213|glycine receptor, alpha 2 subunit	BC068987|Glra2|237213|glycine receptor, alpha 2 subunit	NM_183427|Glra2|237213|glycine receptor, alpha 2 subunit	AK135134|Glra2|237213|glycine receptor, alpha 2 subunit
mm9_v1_chr18_+_37849488_37849707	4.40611	UUGGUCC	BC054557|Pcdhgb2|93700|protocadherin gamma subfamily B, 2	NM_033575|Pcdhgb2|93700|protocadherin gamma subfamily B, 2	AY013805|Pcdhgb2|93700|protocadherin gamma subfamily B, 2
mm9_v1_chr19_-_24248477_24248629	4.4042	UUGGUCC	AF113005|Tjp2|21873|tight junction protein 2	BC042695|Tjp2|21873|tight junction protein 2	BC034677|Tjp2|21873|tight junction protein 2	BC039924|Tjp2|21873|tight junction protein 2	NM_001198985|Tjp2|21873|tight junction protein 2
mm9_v1_chr14_-_76956445_76956583	4.36457	UUGGUCC	AY425619|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	NM_001160326|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	AK012850|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2
mm9_v1_chr11_-_120442889_120442950	4.34911	UUGGUCC	AK170553|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK143516|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK165241|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK170718|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	NM_133796|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha
mm9_v1_chr18_+_37896589_37896589	4.33845	UUGGUCC	BC079567|Pcdhga9|93717|protocadherin gamma subfamily A, 9	NM_033592|Pcdhga9|93717|protocadherin gamma subfamily A, 9
mm9_v1_chr5_+_140383896_140383896	4.33556	UUGGUCC	AK044511|Elfn1|243312|leucine rich repeat and fibronectin type III, extracellular 1	NM_175522|Elfn1|243312|leucine rich repeat and fibronectin type III, extracellular 1
mm9_v1_chr18_+_37925233_37925233	4.32657	UUGGUCC	BC056998|Pcdhga12|93724|protocadherin gamma subfamily A, 12	NM_033595|Pcdhga12|93724|protocadherin gamma subfamily A, 12
mm9_v1_chr18_+_37839910_37840111	4.30989	UUGGUCC	BC054741|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	BC098367|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	AY013804|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	NM_033574|Pcdhgb1|93699|protocadherin gamma subfamily B, 1
mm9_v1_chr10_+_13686174_13686209	4.30282	UUGGUCC	AK147244|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147348|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147655|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	NM_010437|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2
mm9_v1_chr18_+_37911236_37911432	4.23782	UUGGUCC	BC066823|Pcdhgb7|93704|protocadherin gamma subfamily B, 7	AY013809|Pcdhgb7|93704|protocadherin gamma subfamily B, 7	NM_033579|Pcdhgb7|93704|protocadherin gamma subfamily B, 7
mm9_v1_chr4_+_42930076_42930171	4.17265	UUGGUCC	BC057092|N28178|230085|expressed sequence N28178	NM_172690|N28178|230085|expressed sequence N28178	AK046283|N28178|230085|expressed sequence N28178	AK038528|N28178|230085|expressed sequence N28178
mm9_v1_chr18_+_37821598_37821598	4.13249	UUGGUCC	AY013792|Pcdhga1|93709|protocadherin gamma subfamily A, 1	NM_033584|Pcdhga1|93709|protocadherin gamma subfamily A, 1
mm9_v1_chr6_+_14851348_14851478	4.11668	UUGGUCC	NM_053242|Foxp2|114142|forkhead box P2	AK051668|Foxp2|114142|forkhead box P2	AK085080|Foxp2|114142|forkhead box P2	AK080549|Foxp2|114142|forkhead box P2
mm9_v1_chr16_-_4789869_4789937	4.11667	UUGGUCC	AK017480|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK005157|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	BC004063|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK149939|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK150219|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK051560|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK031705|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	NM_025670|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene
mm9_v1_chr9_+_107904919_107905018	4.10166	UUGGUCC	AK172921|Ip6k1|27399|inositol hexaphosphate kinase 1	AK037925|Ip6k1|27399|inositol hexaphosphate kinase 1	AK088872|Ip6k1|27399|inositol hexaphosphate kinase 1	BC053030|Ip6k1|27399|inositol hexaphosphate kinase 1	AK171310|Ip6k1|27399|inositol hexaphosphate kinase 1	AK166143|Ip6k1|27399|inositol hexaphosphate kinase 1	BC059006|Ip6k1|27399|inositol hexaphosphate kinase 1	NM_013785|Ip6k1|27399|inositol hexaphosphate kinase 1
mm9_v1_chr18_+_37874471_37874595	4.06582	UUGGUCC	AK034910|Pcdhga7|93715|protocadherin gamma subfamily A, 7	BC077712|Pcdhga7|93715|protocadherin gamma subfamily A, 7	NM_033590|Pcdhga7|93715|protocadherin gamma subfamily A, 7	AY013801|Pcdhga7|93715|protocadherin gamma subfamily A, 7
mm9_v1_chr14_+_112074336_112074336	4.05072	UUGGUCC	NM_198865|Slitrk5|75409|SLIT and NTRK-like family, member 5
mm9_v1_chr18_+_37866747_37866882	4.03348	UUGGUCC	BC059927|Pcdhga6|93714|protocadherin gamma subfamily A, 6	BC080852|Pcdhga6|93714|protocadherin gamma subfamily A, 6	AY013800|Pcdhga6|93714|protocadherin gamma subfamily A, 6	NM_033589|Pcdhga6|93714|protocadherin gamma subfamily A, 6
mm9_v1_chr13_+_90229271_90229367	4.03281	UUGGUCC	NM_025335|Tmem167|66074|transmembrane protein 167	AK021263|Tmem167|66074|transmembrane protein 167	AK032474|Tmem167|66074|transmembrane protein 167	AK161037|Tmem167|66074|transmembrane protein 167	AK031706|Tmem167|66074|transmembrane protein 167	AK007966|Tmem167|66074|transmembrane protein 167	AK019962|Tmem167|66074|transmembrane protein 167	AK016036|Tmem167|66074|transmembrane protein 167	AK012161|Tmem167|66074|transmembrane protein 167	AK002884|Tmem167|66074|transmembrane protein 167	AK088895|Tmem167|66074|transmembrane protein 167	AK160704|Tmem167|66074|transmembrane protein 167	AK007771|Tmem167|66074|transmembrane protein 167	AK132361|Tmem167|66074|transmembrane protein 167	BC085489|Tmem167|66074|transmembrane protein 167
mm9_v1_chr18_+_37979199_37979219	4.0219	UUGGUCC	AF464163|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	NM_033583|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	AF464164|Pcdhgb4|93701|protocadherin gamma subfamily B, 4
mm9_v1_chr18_+_37921454_37921532	4.00006	UUGGUCC	BC139099|Pcdhgb8|93705|protocadherin gamma subfamily B, 8	BC139100|Pcdhgb8|93705|protocadherin gamma subfamily B, 8	NM_033580|Pcdhgb8|93705|protocadherin gamma subfamily B, 8	AY013810|Pcdhgb8|93705|protocadherin gamma subfamily B, 8
mm9_v1_chr8_-_108089811_108089973	3.99131	UUGGUCC	U21549|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AB088408|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	U13840|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	BC011075|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK171515|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK083372|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	NM_013477|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK133921|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1
mm9_v1_chr1_-_65225583_65225732	3.95392	UUGGUCC	AK087063|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK151212|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK149019|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK159173|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK160896|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK167583|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK167158|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK168832|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	BC088986|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	NM_010497|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble
mm9_v1_chr11_+_75007475_75007498	3.91004	UUGGUCC	AK140456|Rtn4rl1|237847|reticulon 4 receptor-like 1	NM_177708|Rtn4rl1|237847|reticulon 4 receptor-like 1	AK033286|Rtn4rl1|237847|reticulon 4 receptor-like 1
mm9_v1_chrX_-_101017286_101017329	3.88616	UUGGUCC	AF045692|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2	NM_009197|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm9_v1_chr17_-_25707599_25707638	3.79157	UUGGUCC	BC043704|Sox8|20681|SRY-box containing gene 8	BC085619|Sox8|20681|SRY-box containing gene 8	AK032459|Sox8|20681|SRY-box containing gene 8	AK033460|Sox8|20681|SRY-box containing gene 8	AK034231|Sox8|20681|SRY-box containing gene 8	AK046473|Sox8|20681|SRY-box containing gene 8	AK053716|Sox8|20681|SRY-box containing gene 8	AK145294|Sox8|20681|SRY-box containing gene 8	NM_011447|Sox8|20681|SRY-box containing gene 8
mm9_v1_chr18_+_37854011_37854154	3.78244	UUGGUCC	AK043161|Pcdhga5|93713|protocadherin gamma subfamily A, 5	BC057404|Pcdhga5|93713|protocadherin gamma subfamily A, 5	AK043491|Pcdhga5|93713|protocadherin gamma subfamily A, 5	AY013799|Pcdhga5|93713|protocadherin gamma subfamily A, 5	NM_033588|Pcdhga5|93713|protocadherin gamma subfamily A, 5
mm9_v1_chr18_+_37974732_37974732	3.73723	UUGGUCC	BC064808|Pcdhgc4|93707|protocadherin gamma subfamily C, 4	NM_033582|Pcdhgc4|93707|protocadherin gamma subfamily C, 4
mm9_v1_chr18_+_37880036_37880207	3.68388	UUGGUCC	AK083581|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	BC138701|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	AY013806|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	NM_033576|Pcdhgb4|93701|protocadherin gamma subfamily B, 4
mm9_v1_chr2_+_158235580_158235588	3.68039	UUGGUCC	NM_177658|Ralgapb|228850|Ral GTPase activating protein, beta subunit (non-catalytic)
mm9_v1_chr11_+_68912444_68912492	3.66564	UUGGUCC	NM_011065|Per1|18626|period homolog 1 (Drosophila)	BC091645|Per1|18626|period homolog 1 (Drosophila)
mm9_v1_chr9_+_103014374_103014418	3.65072	UUGGUCC	BC060618|Rab6b|270192|RAB6B, member RAS oncogene family	NM_173781|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr7_-_89079335_89079355	3.62945	UUGGUCC	AK045542|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	NM_013886|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3
mm9_v1_chr15_-_95359136_95359208	3.60033	UUGGUCC	NM_016743|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr16_+_20535519_20535657	3.58059	UUGGUCC	AK146517|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK168414|Ap2m1|11773|adaptor protein complex AP-2, mu1	NM_009679|Ap2m1|11773|adaptor protein complex AP-2, mu1	U27106|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK159534|Ap2m1|11773|adaptor protein complex AP-2, mu1	BC056352|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK150358|Ap2m1|11773|adaptor protein complex AP-2, mu1	BC089342|Ap2m1|11773|adaptor protein complex AP-2, mu1	BC094510|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK143586|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK141862|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK172889|Ap2m1|11773|adaptor protein complex AP-2, mu1
mm9_v1_chr17_-_13153538_13153631	3.56553	UUGGUCC	BC004823|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2	BC012496|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2	AK037249|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2	AK151751|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2	AK167234|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2	NM_009338|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2	AK166813|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2
mm9_v1_chr5_+_145844689_145844781	3.55915	UUGGUCC	AB024984|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	NM_019767|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	AK003986|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	AK145663|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	AK076107|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	BC001988|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	AK002475|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A
mm9_v1_chr1_+_136543253_136543257	3.52625	UUGGUCC	AB036514|Syt2|20980|synaptotagmin II	AK036357|Syt2|20980|synaptotagmin II	NM_009307|Syt2|20980|synaptotagmin II
mm9_v1_chr2_-_125332107_125332185	3.51013	UUGGUCC	U22493|Fbn1|14118|fibrillin 1	AK080935|Fbn1|14118|fibrillin 1	NM_007993|Fbn1|14118|fibrillin 1
mm9_v1_chr1_+_93698037_93698053	3.48685	UUGGUCC	AK011180|Twist2|13345|twist homolog 2 (Drosophila)	AK011861|Twist2|13345|twist homolog 2 (Drosophila)	BC090636|Twist2|13345|twist homolog 2 (Drosophila)	NM_007855|Twist2|13345|twist homolog 2 (Drosophila)	U36384|Twist2|13345|twist homolog 2 (Drosophila)
mm9_v1_chr9_+_123438903_123439004	3.48132	UUGGUCC	AK089174|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AK171080|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AK122390|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	EF437383|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AK161111|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	NM_030692|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AJ297526|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	BC117752|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	BC117753|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)
mm9_v1_chr11_+_80290509_80290569	3.47779	UUGGUCC	AK142868|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK086621|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK141549|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK169667|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK079557|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC050768|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	NM_009871|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK039999|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC058697|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC046823|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK048617|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm9_v1_chr1_+_6204729_6204756	3.36905	UUGGUCC	AB050017|Rb1cc1|12421|RB1-inducible coiled-coil 1	AB070619|Rb1cc1|12421|RB1-inducible coiled-coil 1	NM_009826|Rb1cc1|12421|RB1-inducible coiled-coil 1	AK020027|Rb1cc1|12421|RB1-inducible coiled-coil 1
mm9_v1_chr6_-_72566691_72566744	3.32891	UUGGUCC	CT010269|Tgoln1|22134|trans-golgi network protein	AK161242|Tgoln1|22134|trans-golgi network protein	AK145212|Tgoln2|22135|trans-golgi network protein 2	BC009143|Tgoln1|22134|trans-golgi network protein	BC141218|Tgoln1|22134|trans-golgi network protein	BC145542|Tgoln1|22134|trans-golgi network protein	AK133559|Tgoln1|22134|trans-golgi network protein	D50031|Tgoln1|22134|trans-golgi network protein	D50032|Tgoln2|22135|trans-golgi network protein 2	NM_009444|Tgoln2|22135|trans-golgi network protein 2	AK041302|Tgoln1|22134|trans-golgi network protein	AK162574|Tgoln1|22134|trans-golgi network protein
mm9_v1_chr2_-_102291924_102291996	3.28887	UUGGUCC	AK051097|Fjx1|14221|four jointed box 1 (Drosophila)	BC051990|Fjx1|14221|four jointed box 1 (Drosophila)	NM_010218|Fjx1|14221|four jointed box 1 (Drosophila)
mm9_v1_chr17_+_74888823_74888973	3.28652	UUGGUCC	AK166347|Yipf4|67864|Yip1 domain family, member 4	AK009618|Yipf4|67864|Yip1 domain family, member 4	AK083301|Yipf4|67864|Yip1 domain family, member 4	NM_026417|Yipf4|67864|Yip1 domain family, member 4	AK017721|Yipf4|67864|Yip1 domain family, member 4	AK017722|Yipf4|67864|Yip1 domain family, member 4	AK159227|Yipf4|67864|Yip1 domain family, member 4	BC003936|Yipf4|67864|Yip1 domain family, member 4
mm9_v1_chr11_-_18918923_18918971	3.25723	UUGGUCC	AK032947|Meis1|17268|Meis homeobox 1	AK049720|Meis1|17268|Meis homeobox 1	BC023689|Meis1|17268|Meis homeobox 1	AK168684|Meis1|17268|Meis homeobox 1	AK134321|Meis1|17268|Meis homeobox 1	AK140748|Meis1|17268|Meis homeobox 1	NM_001193271|Meis1|17268|Meis homeobox 1	NM_010789|Meis1|17268|Meis homeobox 1
mm9_v1_chr4_-_137952372_137952372	3.25689	UUGGUCC	AK134570|Fam43b|625638|family with sequence similarity 43, member B	NM_001081672|Fam43b|625638|family with sequence similarity 43, member B
mm9_v1_chr6_+_147039596_147039596	3.25447	UUGGUCC	NM_001081237|Klhdc5|232539|kelch domain containing 5
mm9_v1_chr7_-_52622373_52622397	3.2353	UUGGUCC	AK147645|Ppfia3|76787|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	NM_029741|Ppfia3|76787|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
mm9_v1_chr15_+_83610434_83610456	3.15089	UUGGUCC	AK048421|Mpped1|223726|metallophosphoesterase domain containing 1	NM_172610|Mpped1|223726|metallophosphoesterase domain containing 1
mm9_v1_chr6_-_35489875_35489887	3.1357	UUGGUCC	NM_008098|Mtpn|14489|myotrophin
mm9_v1_chr5_-_103640272_103640352	3.05561	UUGGUCC	AK036275|Mapk10|26414|mitogen-activated protein kinase 10	BC046625|Mapk10|26414|mitogen-activated protein kinase 10	AK163206|Mapk10|26414|mitogen-activated protein kinase 10	AK076990|Mapk10|26414|mitogen-activated protein kinase 10	BC026697|Mapk10|26414|mitogen-activated protein kinase 10	AK082242|Mapk10|26414|mitogen-activated protein kinase 10	NM_001081567|Mapk10|26414|mitogen-activated protein kinase 10	NM_009158|Mapk10|26414|mitogen-activated protein kinase 10
mm9_v1_chr2_+_76513326_76513402	3.02398	UUGGUCC	BC031110|Plekha3|83435|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	NM_031256|Plekha3|83435|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3
mm9_v1_chr6_-_52859613_52859613	3.00429	UUGGUCC	BC048577|Jazf1|231986|JAZF zinc finger 1	NM_001168277|Jazf1|231986|JAZF zinc finger 1
mm9_v1_chrX_+_71574403_71574439	2.99425	UUGGUCC	NM_008883|Plxna3|18846|plexin A3	BC093482|Plxna3|18846|plexin A3	D86950|Plxna3|18846|plexin A3
mm9_v1_chr1_+_63492447_63492511	2.95606	UUGGUCC	AK046677|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_001177600|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_011780|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK034022|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK083458|Adam23|23792|a disintegrin and metallopeptidase domain 23
mm9_v1_chr19_+_26679649_26679686	2.93434	UUGGUCC	BC075641|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	NM_011416|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	AK020092|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm9_v1_chr1_+_75396650_75396733	2.92546	UUGGUCC	NM_001173477|Speg|11790|SPEG complex locus
mm9_v1_chr17_-_66426361_66426428	2.90839	UUGGUCC	AK153850|Ankrd12|106585|ankyrin repeat domain 12	BC094292|Ankrd12|106585|ankyrin repeat domain 12	BC050185|Ankrd12|106585|ankyrin repeat domain 12	BC080825|Ankrd12|106585|ankyrin repeat domain 12	BC064777|Ankrd12|106585|ankyrin repeat domain 12	AK012645|Ankrd12|106585|ankyrin repeat domain 12	AK133715|Ankrd12|106585|ankyrin repeat domain 12	NM_001025572|Ankrd12|106585|ankyrin repeat domain 12	AK013457|Ankrd12|106585|ankyrin repeat domain 12
mm9_v1_chr1_+_34068669_34068669	2.89153	UUGGUCC	AF396878|Dst|13518|dystonin	AF396879|Dst|13518|dystonin	NM_133833|Dst|13518|dystonin	NM_134448|Dst|13518|dystonin	U22452|Dst|13518|dystonin
mm9_v1_chr4_+_11413062_11413204	2.81943	UUGGUCC	AK170075|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK155623|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	NM_001081183|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK076731|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK162531|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	BC033309|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK052499|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK034232|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK122509|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene
mm9_v1_chr7_+_127821093_127821157	2.74304	UUGGUCC	NM_001164580|BC030336|233812|cDNA sequence BC030336
mm9_v1_chr12_-_4038848_4038914	2.72693	UUGGUCC	BC147643|Efr3b|668212|EFR3 homolog B (S. cerevisiae)	BC157968|Efr3b|668212|EFR3 homolog B (S. cerevisiae)	NM_001082483|Efr3b|668212|EFR3 homolog B (S. cerevisiae)
mm9_v1_chr14_-_55400722_55400814	2.69508	UUGGUCC	BC059004|Slc7a8|50934|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	NM_016972|Slc7a8|50934|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	AK044620|Slc7a8|50934|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8
mm9_v1_chr7_-_120512849_120512864	2.6866	UUGGUCC	BC050781|Btbd10|68815|BTB (POZ) domain containing 10	NM_133700|Btbd10|68815|BTB (POZ) domain containing 10
mm9_v1_chr9_-_107569654_107569729	2.67577	UUGGUCC	AF159856|Slc38a3|76257|solute carrier family 38, member 3	BC054846|Slc38a3|76257|solute carrier family 38, member 3	NM_023805|Slc38a3|76257|solute carrier family 38, member 3	AK002607|Slc38a3|76257|solute carrier family 38, member 3	BC010678|Slc38a3|76257|solute carrier family 38, member 3
mm9_v1_chr14_-_17407701_17408109	2.63184	UUGGUCC	AK078471|Rarb|218772|retinoic acid receptor, beta	NM_011243|Rarb|218772|retinoic acid receptor, beta	S92180|Rarb|218772|retinoic acid receptor, beta	S56660|Rarb|218772|retinoic acid receptor, beta	AK054178|Rarb|218772|retinoic acid receptor, beta	BC076597|Rarb|218772|retinoic acid receptor, beta	X56573|Rarb|218772|retinoic acid receptor, beta
mm9_v1_chrX_+_137212566_137212566	2.55034	UUGGUCC	AF196480|Mid2|23947|midline 2	NM_011845|Mid2|23947|midline 2
mm9_v1_chr7_+_146271899_146271899	2.54371	UUGGUCC	AK165694|Dpysl4|26757|dihydropyrimidinase-like 4	NM_011993|Dpysl4|26757|dihydropyrimidinase-like 4
mm9_v1_chr6_+_137200819_137200985	2.5421	UUGGUCC	NM_001164401|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	NM_011216|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	AK045929|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	AF135166|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	BC052743|Ptpro|19277|protein tyrosine phosphatase, receptor type, O
mm9_v1_chr18_+_54021746_54021814	2.52082	UUGGUCC	AK049379|Csnk1g3|70425|casein kinase 1, gamma 3	NM_152809|Csnk1g3|70425|casein kinase 1, gamma 3	AK080491|Csnk1g3|70425|casein kinase 1, gamma 3
mm9_v1_chr8_-_4325051_4325113	2.50029	UUGGUCC	AK011870|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK080365|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK075818|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK034536|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	NM_010485|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)
mm9_v1_chr6_+_15135505_15135508	2.48572	UUGGUCC	BC062926|Foxp2|114142|forkhead box P2	NM_212435|Foxp2|114142|forkhead box P2	BC058960|Foxp2|114142|forkhead box P2
mm9_v1_chr10_-_22451211_22451252	2.47363	UUGGUCC	NM_011603|Tbpl1|237336|TATA box binding protein-like 1
mm9_v1_chr15_+_99532698_99532771	2.46083	UUGGUCC	NM_031842|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC059921|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	M25773|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	U66620|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC079839|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr8_+_86423968_86424035	2.45524	UUGGUCC	NM_181039|Lphn1|330814|latrophilin 1	AK147455|Lphn1|330814|latrophilin 1
mm9_v1_chr14_+_55502261_55502285	2.44177	UUGGUCC	AF030769|Bcl2l2|12050|BCL2-like 2	NM_007537|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr18_-_61336629_61336741	2.42267	UUGGUCC	BC079580|Hmgxb3|106894|HMG box domain containing 3	AK088852|Hmgxb3|106894|HMG box domain containing 3	AK034086|Hmgxb3|106894|HMG box domain containing 3	AK041866|Hmgxb3|106894|HMG box domain containing 3	AK144993|Hmgxb3|106894|HMG box domain containing 3	NM_178277|Hmgxb3|106894|HMG box domain containing 3	AB045322|Hmgxb3|106894|HMG box domain containing 3	NM_134134|Hmgxb3|106894|HMG box domain containing 3
mm9_v1_chr16_+_13358513_13358556	2.37575	UUGGUCC	NM_153588|Mkl2|239719|MKL/myocardin-like 2
mm9_v1_chr15_+_59146590_59147021	2.32734	UUGGUCC	AK148419|Sqle|20775|squalene epoxidase	AK138457|Sqle|20775|squalene epoxidase	BC056361|Sqle|20775|squalene epoxidase	NM_009270|Sqle|20775|squalene epoxidase	AK161837|Sqle|20775|squalene epoxidase	AK163502|Sqle|20775|squalene epoxidase	D42048|Sqle|20775|squalene epoxidase	AK202136|Sqle|20775|squalene epoxidase
mm9_v1_chr7_+_59134514_59134648	2.30104	UUGGUCC	NM_008087|Gas2|14453|growth arrest specific 2	M21828|Gas2|14453|growth arrest specific 2
mm9_v1_chr5_+_32913539_32913707	2.29542	UUGGUCC	AK035612|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	AK031316|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	AK052478|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	NM_009535|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	X67677|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	BC010594|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm9_v1_chr11_+_69579376_69579461	2.28419	UUGGUCC	AK163593|Zbtb4|75580|zinc finger and BTB domain containing 4	NM_029348|Zbtb4|75580|zinc finger and BTB domain containing 4	AK147212|Zbtb4|75580|zinc finger and BTB domain containing 4
mm9_v1_chrX_-_130223380_130223542	2.27573	UUGGUCC	AK046726|Pcdh19|279653|protocadherin 19	NM_001105245|Pcdh19|279653|protocadherin 19	NM_001105246|Pcdh19|279653|protocadherin 19
mm9_v1_chrX_-_22942176_22942193	2.25103	UUGGUCC	AK004677|Klhl13|67455|kelch-like 13 (Drosophila)	NM_026167|Klhl13|67455|kelch-like 13 (Drosophila)	AK045102|Klhl13|67455|kelch-like 13 (Drosophila)	AK051752|Klhl13|67455|kelch-like 13 (Drosophila)
mm9_v1_chr7_+_98239230_98239295	2.24471	UUGGUCC	NM_011807|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr13_+_25147872_25147872	2.24358	UUGGUCC	BC045136|Dcdc2a|195208|doublecortin domain containing 2a	NM_001195617|Dcdc2a|195208|doublecortin domain containing 2a	NM_177577|Dcdc2a|195208|doublecortin domain containing 2a
mm9_v1_chr11_-_100259048_100259060	2.22702	UUGGUCC	BC040757|Jup|16480|junction plakoglobin	NM_010593|Jup|16480|junction plakoglobin	BC094461|Jup|16480|junction plakoglobin
mm9_v1_chr11_-_84953442_84953491	2.22136	UUGGUCC	AK170234|Usp32|237898|ubiquitin specific peptidase 32	AK148221|Usp32|237898|ubiquitin specific peptidase 32	NM_001029934|Usp32|237898|ubiquitin specific peptidase 32
mm9_v1_chr7_+_73007017_73007098	2.2006	UUGGUCC	NM_011048|Pcsk6|18553|proprotein convertase subtilisin/kexin type 6	D50060|Pcsk6|18553|proprotein convertase subtilisin/kexin type 6
mm9_v1_chr3_-_86978431_86978668	2.18556	UUGGUCC	BC023765|Kirrel|170643|kin of IRRE like (Drosophila)	AK158381|Kirrel|170643|kin of IRRE like (Drosophila)	NM_001170985|Kirrel|170643|kin of IRRE like (Drosophila)	NM_130867|Kirrel|170643|kin of IRRE like (Drosophila)
mm9_v1_chr9_-_78329444_78329551	2.12706	UUGGUCC	BC092053|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	BC095965|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	BC108391|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	BC018223|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	BC018485|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	BC083069|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	M22432|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK162313|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK166615|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK167873|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK032914|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK050635|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK151479|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK162440|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK164113|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK168467|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK003188|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK011771|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK012341|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK076696|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK081725|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK083361|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK088041|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK133725|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK135448|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK137223|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK141243|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK150798|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK151773|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK152810|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK152993|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK153387|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK153402|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK153851|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK162049|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK163799|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK164671|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK165938|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK166021|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK166033|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK166058|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK166089|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK166807|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK167843|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK168424|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	NM_010106|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1
mm9_v1_chr9_+_44947045_44947124	2.08013	UUGGUCC	BC139399|Scn4b|399548|sodium channel, type IV, beta	BC139400|Scn4b|399548|sodium channel, type IV, beta	AY669079|Scn4b|399548|sodium channel, type IV, beta	NM_001013390|Scn4b|399548|sodium channel, type IV, beta
mm9_v1_chr2_+_25284190_25284289	2.07557	UUGGUCC	AK169438|Abca2|11305|ATP-binding cassette, sub-family A (ABC1), member 2	NM_007379|Abca2|11305|ATP-binding cassette, sub-family A (ABC1), member 2	X75927|Abca2|11305|ATP-binding cassette, sub-family A (ABC1), member 2
mm9_v1_chr1_+_75378688_75378710	2.0491	UUGGUCC	NM_001085371|Speg|11790|SPEG complex locus	AK164360|Speg|11790|SPEG complex locus
mm9_v1_chr16_-_56717337_56717511	2.04835	UUGGUCC	AK008549|Tfg|21787|Trk-fused gene	BC024638|Tfg|21787|Trk-fused gene	AK088864|Tfg|21787|Trk-fused gene	AK167475|Tfg|21787|Trk-fused gene	AK158539|Tfg|21787|Trk-fused gene	NM_019678|Tfg|21787|Trk-fused gene	U94662|Tfg|21787|Trk-fused gene
mm9_v1_chr6_-_120443824_120443824	2.00615	UUGGUCC	AF277399|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	BC137862|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	NM_033567|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)
mm9_v1_chr19_-_4439350_4439433	2.00297	UUGGUCC	X84325|Rhod|11854|ras homolog gene family, member D	BC005652|Rhod|11854|ras homolog gene family, member D	AK008880|Rhod|11854|ras homolog gene family, member D	NM_007485|Rhod|11854|ras homolog gene family, member D	BC047989|Rhod|11854|ras homolog gene family, member D	D89821|Rhod|11854|ras homolog gene family, member D
mm9_v1_chr2_+_31805751_31805822	1.99325	UUGGUCC	AK045539|Aif1l|108897|allograft inflammatory factor 1-like	BC024599|Aif1l|108897|allograft inflammatory factor 1-like	NM_145144|Aif1l|108897|allograft inflammatory factor 1-like
mm9_v1_chr5_+_36235967_36236084	1.96467	UUGGUCC	BC050814|Afap1|70292|actin filament associated protein 1	NM_027373|Afap1|70292|actin filament associated protein 1	AK161385|Afap1|70292|actin filament associated protein 1	AK080756|Afap1|70292|actin filament associated protein 1	AK129483|Afap1|70292|actin filament associated protein 1	AK147706|Afap1|70292|actin filament associated protein 1
mm9_v1_chr2_+_65683823_65683911	1.9631	UUGGUCC	NM_153409|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	NM_178634|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	EF210820|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK039150|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK082649|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK020730|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK080761|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	BC055701|Csrnp3|77771|cysteine-serine-rich nuclear protein 3
mm9_v1_chr18_+_10325174_10325177	1.95428	UUGGUCC	AK142556|Greb1l|381157|growth regulation by estrogen in breast cancer-like	NM_001083628|Greb1l|381157|growth regulation by estrogen in breast cancer-like
mm9_v1_chr19_+_45063750_45063833	1.94661	UUGGUCC	AK039355|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	BC054532|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	AK173219|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	AF134918|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	NM_011976|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm9_v1_chr4_-_57314708_57314708	1.93623	UUGGUCC	AK052928|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3	NM_011207|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3
mm9_v1_chr13_+_41701584_41701584	1.92177	UUGGUCC	NM_001163572|Tmem170b|621976|transmembrane protein 170B
mm9_v1_chr7_-_108080671_108080707	1.9012	UUGGUCC	NM_001081116|Arhgef17|207212|Rho guanine nucleotide exchange factor (GEF) 17
mm9_v1_chr5_+_102910409_102910555	1.89366	UUGGUCC	AK080986|Arhgap24|231532|Rho GTPase activating protein 24	NM_029270|Arhgap24|231532|Rho GTPase activating protein 24	NM_146161|Arhgap24|231532|Rho GTPase activating protein 24	AK052395|Arhgap24|231532|Rho GTPase activating protein 24
mm9_v1_chr7_-_140206929_140206929	1.87708	UUGGUCC	NM_001170744|Ctbp2|13017|C-terminal binding protein 2
mm9_v1_chr10_-_42894259_42894340	1.8686	UUGGUCC	BC059851|Sobp|109205|sine oculis-binding protein homolog (Drosophila)	NM_175407|Sobp|109205|sine oculis-binding protein homolog (Drosophila)
mm9_v1_chr19_-_7557690_7557778	1.86096	UUGGUCC	BC079882|Rtn3|20168|reticulon 3	BC014697|Rtn3|20168|reticulon 3	AK075883|Rtn3|20168|reticulon 3	AK165683|Rtn3|20168|reticulon 3	AK088670|Rtn3|20168|reticulon 3	AK049845|Rtn3|20168|reticulon 3	AF195940|Rtn3|20168|reticulon 3	AK148792|Rtn3|20168|reticulon 3	AK148947|Rtn3|20168|reticulon 3	AK036892|Rtn3|20168|reticulon 3	AK032109|Rtn3|20168|reticulon 3	AY427822|Rtn3|20168|reticulon 3	AY750849|Rtn3|20168|reticulon 3	AB046114|Rtn3|20168|reticulon 3	AY164700|Rtn3|20168|reticulon 3	NM_053076|Rtn3|20168|reticulon 3	NM_001003933|Rtn3|20168|reticulon 3	NM_001003934|Rtn3|20168|reticulon 3
mm9_v1_chr1_+_133724553_133724859	1.84887	UUGGUCC	BC096596|Slc41a1|98396|solute carrier family 41, member 1	AK089802|Slc41a1|98396|solute carrier family 41, member 1	NM_173865|Slc41a1|98396|solute carrier family 41, member 1	AK045861|Slc41a1|98396|solute carrier family 41, member 1	AK154819|Slc41a1|98396|solute carrier family 41, member 1	BC042724|Slc41a1|98396|solute carrier family 41, member 1	BC116280|Slc41a1|98396|solute carrier family 41, member 1	BC116281|Slc41a1|98396|solute carrier family 41, member 1	AK039371|Slc41a1|98396|solute carrier family 41, member 1
mm9_v1_chr19_-_46470175_46470258	1.84325	UUGGUCC	BC007131|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK010632|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AB010297|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	NM_016860|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK019518|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK168889|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK088062|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK167450|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK162248|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
mm9_v1_chr12_+_110691637_110691748	1.84286	UUGGUCC	AK162458|Dlk1|13386|delta-like 1 homolog (Drosophila)	NM_001190703|Dlk1|13386|delta-like 1 homolog (Drosophila)	NM_001190704|Dlk1|13386|delta-like 1 homolog (Drosophila)	NM_001190705|Dlk1|13386|delta-like 1 homolog (Drosophila)	NM_010052|Dlk1|13386|delta-like 1 homolog (Drosophila)	AK005522|Dlk1|13386|delta-like 1 homolog (Drosophila)	AK164935|Dlk1|13386|delta-like 1 homolog (Drosophila)	L12721|Dlk1|13386|delta-like 1 homolog (Drosophila)	BC052159|Dlk1|13386|delta-like 1 homolog (Drosophila)	U15980|Dlk1|13386|delta-like 1 homolog (Drosophila)	EU434917|Dlk1|13386|delta-like 1 homolog (Drosophila)
mm9_v1_chrX_-_53851046_53851096	1.81867	UUGGUCC	EU069461|Mmgt1|236792|membrane magnesium transporter 1	AK049689|Mmgt1|236792|membrane magnesium transporter 1	AK036253|Mmgt1|236792|membrane magnesium transporter 1	NM_146234|Mmgt1|236792|membrane magnesium transporter 1
mm9_v1_chr17_-_13133166_13133267	1.78613	UUGGUCC	BC049873|Acat3|224530|acetyl-Coenzyme A acetyltransferase 3	AK143884|Acat3|224530|acetyl-Coenzyme A acetyltransferase 3	AK149441|Acat3|224530|acetyl-Coenzyme A acetyltransferase 3	NM_153151|Acat3|224530|acetyl-Coenzyme A acetyltransferase 3	AF356876|Acat3|224530|acetyl-Coenzyme A acetyltransferase 3
mm9_v1_chr4_+_126846429_126846514	1.76972	UUGGUCC	BC057615|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3	NM_198618|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3
mm9_v1_chr7_+_54305973_54306101	1.75314	UUGGUCC	AK007864|Tmem86a|67893|transmembrane protein 86A	NM_026436|Tmem86a|67893|transmembrane protein 86A	AK075589|Tmem86a|67893|transmembrane protein 86A	BC056619|Tmem86a|67893|transmembrane protein 86A
mm9_v1_chr1_+_127457542_127457669	1.73528	UUGGUCC	AK145848|Slc35f5|74150|solute carrier family 35, member F5	NM_028787|Slc35f5|74150|solute carrier family 35, member F5	AK076339|Slc35f5|74150|solute carrier family 35, member F5	AK004892|Slc35f5|74150|solute carrier family 35, member F5	AK171951|Slc35f5|74150|solute carrier family 35, member F5
mm9_v1_chr11_+_94797565_94797682	1.65298	UUGGUCC	AK159283|Col1a1|12842|collagen, type I, alpha 1	AK159285|Col1a1|12842|collagen, type I, alpha 1	AK132180|Col1a1|12842|collagen, type I, alpha 1	AK158011|Col1a1|12842|collagen, type I, alpha 1	BC059281|Col1a1|12842|collagen, type I, alpha 1	BC050014|Col1a1|12842|collagen, type I, alpha 1	NM_007742|Col1a1|12842|collagen, type I, alpha 1	U08020|Col1a1|12842|collagen, type I, alpha 1
mm9_v1_chr19_+_29038321_29038434	1.6327	UUGGUCC	AK016572|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2	NM_028922|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2	AK041581|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2
mm9_v1_chr18_+_86882439_86882439	1.62268	UUGGUCC	AK032112|Cbln2|12405|cerebellin 2 precursor protein	NM_172633|Cbln2|12405|cerebellin 2 precursor protein
mm9_v1_chr16_+_13256573_13256634	1.6086	UUGGUCC	NM_001122667|Mkl2|239719|MKL/myocardin-like 2	X66901|Mkl2|239719|MKL/myocardin-like 2
mm9_v1_chr12_+_81564081_81564252	1.57792	UUGGUCC	AK167692|Exd2|97827|exonuclease 3'-5' domain containing 2	NM_133798|Exd2|97827|exonuclease 3'-5' domain containing 2	AK166390|Exd2|97827|exonuclease 3'-5' domain containing 2	AK146901|Exd2|97827|exonuclease 3'-5' domain containing 2	AK158201|Exd2|97827|exonuclease 3'-5' domain containing 2	AK164329|Exd2|97827|exonuclease 3'-5' domain containing 2	AK147922|Exd2|97827|exonuclease 3'-5' domain containing 2
mm9_v1_chr2_+_119373442_119373461	1.53008	UUGGUCC	NM_019769|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene	AK156588|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene	AK045920|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene	AK168284|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene	AK075723|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene
mm9_v1_chr11_-_71949346_71949391	1.5294	UUGGUCC	AK147444|Pitpnm3|327958|PITPNM family member 3	NM_001024927|Pitpnm3|327958|PITPNM family member 3	NM_001081641|Pitpnm3|327958|PITPNM family member 3
mm9_v1_chr17_+_42452895_42453084	1.46645	UUGGUCC	NM_028474|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene	AK014270|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene	BC145294|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene
mm9_v1_chr3_-_63768461_63768654	1.46515	UUGGUCC	AK144703|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	AK135092|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	BC063104|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	AK136323|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	BC054395|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	NM_015728|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1
mm9_v1_chr15_-_98438063_98438063	1.44161	UUGGUCC	AK147516|Adcy6|11512|adenylate cyclase 6	NM_007405|Adcy6|11512|adenylate cyclase 6
mm9_v1_chr7_-_29747285_29747394	1.4308	UUGGUCC	AJ289242|Actn4|60595|actinin alpha 4	AK150044|Actn4|60595|actinin alpha 4	NM_021895|Actn4|60595|actinin alpha 4	BC013616|Actn4|60595|actinin alpha 4	AK145322|Actn4|60595|actinin alpha 4
mm9_v1_chr4_+_28740280_28740313	1.37554	UUGGUCC	AK033903|Epha7|13841|Eph receptor A7	NM_001122889|Epha7|13841|Eph receptor A7	NM_010141|Epha7|13841|Eph receptor A7	X79082|Epha7|13841|Eph receptor A7	X79083|Epha7|13841|Eph receptor A7	X79084|Epha7|13841|Eph receptor A7
mm9_v1_chr8_+_41947720_41947804	1.37201	UUGGUCC	NM_007514|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	NM_001044740|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	AK155558|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	AK169923|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	AK154621|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	AK171369|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	DQ086834|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	U35650|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	BC127082|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
mm9_v1_chr12_-_76836549_76836721	1.32016	UUGGUCC	AF415215|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	BC037592|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	BC026814|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AF247177|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AK154116|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AK043586|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AK149860|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	NM_030750|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1
mm9_v1_chr11_-_97490978_97491083	1.30859	UUGGUCC	AK087411|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene	BC055770|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene	NM_175332|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene
mm9_v1_chr3_+_129235284_129235325	1.29629	UUGGUCC	AK087440|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AK029029|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	NM_130450|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	BC051041|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AY053453|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm9_v1_chr8_-_107779027_107779052	1.27727	UUGGUCC	AK169360|B3gnt9-ps|97440|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9, pseudogene	NM_178879|B3gnt9-ps|97440|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9, pseudogene	AK032108|B3gnt9-ps|97440|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9, pseudogene
mm9_v1_chr10_+_51953390_51953445	1.26882	UUGGUCC	AK016485|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	NM_025705|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	AK157211|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1
mm9_v1_chr3_-_33041993_33042007	1.24804	UUGGUCC	AK042235|Pex5l|58869|peroxisomal biogenesis factor 5-like	AK083141|Pex5l|58869|peroxisomal biogenesis factor 5-like	NM_001163516|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr2_-_12223518_12223578	1.2376	UUGGUCC	BC137793|Itga8|241226|integrin alpha 8	AK135193|Itga8|241226|integrin alpha 8	AK044910|Itga8|241226|integrin alpha 8	NM_001001309|Itga8|241226|integrin alpha 8
mm9_v1_chrX_-_12339096_12339247	1.20732	UUGGUCC	AB019028|Med14|26896|mediator complex subunit 14	NM_001048208|Med14|26896|mediator complex subunit 14	NM_012005|Med14|26896|mediator complex subunit 14	BC065072|Med14|26896|mediator complex subunit 14
mm9_v1_chr15_+_85036434_85036600	1.2001	UUGGUCC	AK083573|Fbln1|14114|fibulin 1	AK086451|Fbln1|14114|fibulin 1	NM_010180|Fbln1|14114|fibulin 1	X70854|Fbln1|14114|fibulin 1	AK035388|Fbln1|14114|fibulin 1	AK159646|Fbln1|14114|fibulin 1	AK085989|Fbln1|14114|fibulin 1	AK137511|Fbln1|14114|fibulin 1	EU543224|Fbln1|14114|fibulin 1	BC007140|Fbln1|14114|fibulin 1	AK183901|Fbln1|14114|fibulin 1	AK188770|Fbln1|14114|fibulin 1
mm9_v1_chr10_+_115738429_115738633	1.19502	UUGGUCC	AK147439|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	AK147668|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	NM_029928|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	AY077755|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	BC141006|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	BC145111|Ptprb|19263|protein tyrosine phosphatase, receptor type, B
mm9_v1_chr3_+_88769733_88769733	1.1598	UUGGUCC	NM_138679|Ash1l|192195|ash1 (absent, small, or homeotic)-like (Drosophila)
mm9_v1_chr11_+_5688463_5688609	1.15936	UUGGUCC	NM_001146308|Dbnl|13169|drebrin-like	NM_001146309|Dbnl|13169|drebrin-like	NM_013810|Dbnl|13169|drebrin-like	AK053796|Dbnl|13169|drebrin-like	AK046073|Dbnl|13169|drebrin-like	AK151096|Dbnl|13169|drebrin-like	AK152204|Dbnl|13169|drebrin-like	AK153072|Dbnl|13169|drebrin-like	AK161973|Dbnl|13169|drebrin-like	AK159984|Dbnl|13169|drebrin-like	AK168898|Dbnl|13169|drebrin-like	AK134136|Dbnl|13169|drebrin-like	AK134487|Dbnl|13169|drebrin-like	AK140752|Dbnl|13169|drebrin-like	AK146920|Dbnl|13169|drebrin-like	AK152110|Dbnl|13169|drebrin-like	BC046430|Dbnl|13169|drebrin-like	AK078082|Dbnl|13169|drebrin-like	AK172471|Dbnl|13169|drebrin-like	U58884|Dbnl|13169|drebrin-like	AK153389|Dbnl|13169|drebrin-like	AK142818|Dbnl|13169|drebrin-like	AK167956|Dbnl|13169|drebrin-like	AY098595|Dbnl|13169|drebrin-like	AK199448|Dbnl|13169|drebrin-like	AK203166|Dbnl|13169|drebrin-like
mm9_v1_chr10_+_27794625_27794662	1.15842	UUGGUCC	NM_008983|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	AK078614|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	BC138376|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	BC145261|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	AK083006|Ptprk|19272|protein tyrosine phosphatase, receptor type, K
mm9_v1_chr7_+_16715637_16715696	1.1566	UUGGUCC	BC058704|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2	NM_148946|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2	BC080277|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2
mm9_v1_chr5_+_32438843_32438906	1.13978	UUGGUCC	NM_008037|Fosl2|14284|fos-like antigen 2	BC065131|Fosl2|14284|fos-like antigen 2
mm9_v1_chr4_-_122563074_122563173	1.12198	UUGGUCC	AK169652|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK144094|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK165565|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK171388|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK162629|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK137222|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK128889|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	L12367|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK158150|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK170901|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK156556|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK053351|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	NM_007598|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)
mm9_v1_chr1_-_52290058_52290076	1.08092	UUGGUCC	AK173039|Gls|14660|glutaminase	NM_001081081|Gls|14660|glutaminase	NM_001113383|Gls|14660|glutaminase
mm9_v1_chr16_+_32277544_32277611	1.03531	UUGGUCC	AK053769|Rnf168|70238|ring finger protein 168	NM_027355|Rnf168|70238|ring finger protein 168	BC046815|Rnf168|70238|ring finger protein 168	AK013946|Rnf168|70238|ring finger protein 168
mm9_v1_chr8_-_70498472_70498472	1.02639	UUGGUCC	AB220685|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_177698|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr11_-_69182891_69182931	1.00573	UUGGUCC	AK045449|Chd3|216848|chromodomain helicase DNA binding protein 3	NM_146019|Chd3|216848|chromodomain helicase DNA binding protein 3
mm9_v1_chrX_-_7709907_7709983	0.960826	UUGGUCC	BC080853|Wdr13|73447|WD repeat domain 13	BC057366|Wdr13|73447|WD repeat domain 13	NM_026137|Wdr13|73447|WD repeat domain 13
mm9_v1_chr5_-_52957518_52957569	0.900511	UUGGUCC	NM_144945|Lgi2|246316|leucine-rich repeat LGI family, member 2	AJ487515|Lgi2|246316|leucine-rich repeat LGI family, member 2
mm9_v1_chr5_-_31395853_31395951	0.867995	UUGGUCC	U76007|Slc30a3|22784|solute carrier family 30 (zinc transporter), member 3	AK165796|Slc30a3|22784|solute carrier family 30 (zinc transporter), member 3	BC066199|Slc30a3|22784|solute carrier family 30 (zinc transporter), member 3	AK144568|Slc30a3|22784|solute carrier family 30 (zinc transporter), member 3	NM_011773|Slc30a3|22784|solute carrier family 30 (zinc transporter), member 3
mm9_v1_chr16_+_81200909_81200967	0.859854	UUGGUCC	NM_001113208|Ncam2|17968|neural cell adhesion molecule 2	NM_010954|Ncam2|17968|neural cell adhesion molecule 2
mm9_v1_chr2_+_128644032_128644119	0.856734	UUGGUCC	NM_028248|Tmem87b|72477|transmembrane protein 87B	AK050203|Tmem87b|72477|transmembrane protein 87B	AK166991|Tmem87b|72477|transmembrane protein 87B	AK164504|Tmem87b|72477|transmembrane protein 87B	AK171811|Tmem87b|72477|transmembrane protein 87B	AK172611|Tmem87b|72477|transmembrane protein 87B	BC031488|Tmem87b|72477|transmembrane protein 87B	AK011959|Tmem87b|72477|transmembrane protein 87B
mm9_v1_chr2_+_152987036_152987075	0.851879	UUGGUCC	NM_133847|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK083541|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	BC116320|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK035622|Tm9sf4|99237|transmembrane 9 superfamily protein member 4
mm9_v1_chr7_+_119902897_119902956	0.832395	UUGGUCC	NM_001166585|Tead1|21676|TEA domain family member 1	L06865|Tead1|21676|TEA domain family member 1	BC052021|Tead1|21676|TEA domain family member 1	BC060138|Tead1|21676|TEA domain family member 1
mm9_v1_chr7_-_140315100_140315165	0.832049	UUGGUCC	NM_009980|Ctbp2|13017|C-terminal binding protein 2
mm9_v1_chr11_+_114536748_114536848	0.825972	UUGGUCC	AK154835|Ttyh2|117160|tweety homolog 2 (Drosophila)	AK155166|Ttyh2|117160|tweety homolog 2 (Drosophila)	NM_053273|Ttyh2|117160|tweety homolog 2 (Drosophila)	AK168408|Ttyh2|117160|tweety homolog 2 (Drosophila)	AK152172|Ttyh2|117160|tweety homolog 2 (Drosophila)	AK156393|Ttyh2|117160|tweety homolog 2 (Drosophila)	AF329682|Ttyh2|117160|tweety homolog 2 (Drosophila)	BC060740|Ttyh2|117160|tweety homolog 2 (Drosophila)
mm9_v1_chrX_+_58962671_58962790	0.815479	UUGGUCC	AK137057|Ldoc1|434784|leucine zipper, down-regulated in cancer 1	BC052689|Ldoc1|434784|leucine zipper, down-regulated in cancer 1	NM_001018087|Ldoc1|434784|leucine zipper, down-regulated in cancer 1
mm9_v1_chr18_-_58369579_58369752	0.779853	UUGGUCC	AK132163|Fbn2|14119|fibrillin 2	NM_010181|Fbn2|14119|fibrillin 2
mm9_v1_chr11_+_16652205_16652516	0.766312	UUGGUCC	AK004883|Egfr|13649|epidermal growth factor receptor	NM_007912|Egfr|13649|epidermal growth factor receptor	NM_207655|Egfr|13649|epidermal growth factor receptor	AK004944|Egfr|13649|epidermal growth factor receptor	AK004911|Egfr|13649|epidermal growth factor receptor	AK134262|Egfr|13649|epidermal growth factor receptor	AK014017|Egfr|13649|epidermal growth factor receptor	BC023729|Egfr|13649|epidermal growth factor receptor	AF124513|Egfr|13649|epidermal growth factor receptor	AF275367|Egfr|13649|epidermal growth factor receptor	X59698|Egfr|13649|epidermal growth factor receptor	AK049452|Egfr|13649|epidermal growth factor receptor	X78987|Egfr|13649|epidermal growth factor receptor	U03425|Egfr|13649|epidermal growth factor receptor	L06864|Egfr|13649|epidermal growth factor receptor
mm9_v1_chr5_+_145306751_145306864	0.751707	UUGGUCC	AK134806|Nptx2|53324|neuronal pentraxin 2	NM_016789|Nptx2|53324|neuronal pentraxin 2	BC026054|Nptx2|53324|neuronal pentraxin 2	AF049124|Nptx2|53324|neuronal pentraxin 2
mm9_v1_chrX_-_54646073_54646213	0.740988	UUGGUCC	AK207357|Rbmx|19655|RNA binding motif protein, X chromosome	AJ237846|Rbmx|19655|RNA binding motif protein, X chromosome	AJ237847|Rbmx|19655|RNA binding motif protein, X chromosome	AK165006|Rbmx|19655|RNA binding motif protein, X chromosome	BC003710|Rbmx|19655|RNA binding motif protein, X chromosome	AK083899|Rbmx|19655|RNA binding motif protein, X chromosome	AK135164|Rbmx|19655|RNA binding motif protein, X chromosome	NM_001166623|Rbmx|19655|RNA binding motif protein, X chromosome	NM_011252|Rbmx|19655|RNA binding motif protein, X chromosome
mm9_v1_chr11_+_66725482_66725594	0.739418	UUGGUCC	AK051285|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	AK041182|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	AK051645|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	NM_178656|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	AK084056|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	AK051158|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	BC147296|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	BC147297|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels
mm9_v1_chr11_-_60166405_60166439	0.729116	UUGGUCC	AK166040|Tom1l2|216810|target of myb1-like 2 (chicken)	NM_001039092|Tom1l2|216810|target of myb1-like 2 (chicken)	NM_001039093|Tom1l2|216810|target of myb1-like 2 (chicken)	NM_153080|Tom1l2|216810|target of myb1-like 2 (chicken)
mm9_v1_chr6_-_108135548_108135588	0.723553	UUGGUCC	BC026981|Sumf1|58911|sulfatase modifying factor 1	AK160917|Sumf1|58911|sulfatase modifying factor 1	AK159192|Sumf1|58911|sulfatase modifying factor 1	AK161203|Sumf1|58911|sulfatase modifying factor 1	AK151874|Sumf1|58911|sulfatase modifying factor 1	NM_145937|Sumf1|58911|sulfatase modifying factor 1
mm9_v1_chr19_+_26822892_26822948	0.71907	UUGGUCC	NM_026003|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	AK011935|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm9_v1_chr6_+_29685467_29685542	0.676145	UUGGUCC	NM_176996|Smo|319757|smoothened homolog (Drosophila)	AK053699|Smo|319757|smoothened homolog (Drosophila)	AK053708|Smo|319757|smoothened homolog (Drosophila)
mm9_v1_chr6_-_24614975_24615061	0.675985	UUGGUCC	AK143969|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	AK014104|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	BC058642|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	NM_001167745|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	NM_028459|Wasl|73178|Wiskott-Aldrich syndrome-like (human)
mm9_v1_chr11_+_51912319_51912329	0.663506	UUGGUCC	AK076110|Ppp2ca|19052|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	NM_019411|Ppp2ca|19052|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
mm9_v1_chrX_-_154481041_154481154	0.660943	UUGGUCC	BC043093|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2	BC060716|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2	NM_177751|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2	AK122399|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2	AK141544|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2
mm9_v1_chr17_-_82137708_82137731	0.651016	UUGGUCC	AF004666|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_001112798|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_011406|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	U70033|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	AK084813|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene	AK085810|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene
mm9_v1_chrY_-_623013_623055	0.649825	UUGGUCC	AK154382|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	AJ007376|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	BC051046|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	NM_012008|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
mm9_v1_chr14_-_124591742_124591767	0.6441	UUGGUCC	U66204|Fgf14|14169|fibroblast growth factor 14	NM_010201|Fgf14|14169|fibroblast growth factor 14
mm9_v1_chr17_-_72953646_72953646	0.634979	UUGGUCC	AK051358|Alk|11682|anaplastic lymphoma kinase	NM_007439|Alk|11682|anaplastic lymphoma kinase
mm9_v1_chr8_-_113555584_113555650	0.627028	UUGGUCC	AK033235|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	NM_001190786|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
mm9_v1_chr14_+_67852128_67852128	0.607138	UUGGUCC	AK053013|Ebf2|13592|early B-cell factor 2	NM_010095|Ebf2|13592|early B-cell factor 2
mm9_v1_chr4_-_155608927_155608999	0.598406	UUGGUCC	AY423764|Klhl17|231003|kelch-like 17 (Drosophila)	NM_198305|Klhl17|231003|kelch-like 17 (Drosophila)
mm9_v1_chr1_-_52784161_52784228	0.559247	UUGGUCC	AK035995|Mfsd6|98682|major facilitator superfamily domain containing 6	NM_133829|Mfsd6|98682|major facilitator superfamily domain containing 6	NM_178081|Mfsd6|98682|major facilitator superfamily domain containing 6	AK171946|Mfsd6|98682|major facilitator superfamily domain containing 6
mm9_v1_chr5_-_37187944_37188018	0.558105	UUGGUCC	AK009827|Mrfap1|67568|Morf4 family associated protein 1	BC010209|Mrfap1|67568|Morf4 family associated protein 1	AK170909|Mrfap1|67568|Morf4 family associated protein 1	AK170984|Mrfap1|67568|Morf4 family associated protein 1	AK017832|Mrfap1|67568|Morf4 family associated protein 1	AK167112|Mrfap1|67568|Morf4 family associated protein 1	AB041651|Mrfap1|67568|Morf4 family associated protein 1	AK159464|Mrfap1|67568|Morf4 family associated protein 1	AK005313|Mrfap1|67568|Morf4 family associated protein 1	NM_026242|Mrfap1|67568|Morf4 family associated protein 1
mm9_v1_chr15_+_34767109_34767135	0.544634	UUGGUCC	AK173110|Kcns2|16539|K+ voltage-gated channel, subfamily S, 2	AK048819|Kcns2|16539|K+ voltage-gated channel, subfamily S, 2	NM_181317|Kcns2|16539|K+ voltage-gated channel, subfamily S, 2
mm9_v1_chr5_+_125343060_125343124	0.541977	UUGGUCC	AK143192|Zfp664|269704|zinc finger protein 664	AK086580|Zfp664|269704|zinc finger protein 664	AK039671|Zfp664|269704|zinc finger protein 664	NM_001081750|Zfp664|269704|zinc finger protein 664	AK165974|Zfp664|269704|zinc finger protein 664
mm9_v1_chr15_+_102038697_102038697	0.531411	UUGGUCC	BC030410|Zfp740|68744|zinc finger protein 740	NM_153194|Zfp740|68744|zinc finger protein 740
mm9_v1_chr12_+_66066728_66067042	0.530161	UUGGUCC	NM_177805|Fam179b|328108|family with sequence similarity 179, member B	AK141238|Fam179b|328108|family with sequence similarity 179, member B	BC157958|Fam179b|328108|family with sequence similarity 179, member B	BC158008|Fam179b|328108|family with sequence similarity 179, member B	BC172117|Fam179b|328108|family with sequence similarity 179, member B	AK039995|Fam179b|328108|family with sequence similarity 179, member B
mm9_v1_chr8_-_113551636_113551700	0.514095	UUGGUCC	AK147499|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	AK013362|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	NM_001190800|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	NM_172284|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
mm9_v1_chr7_-_53080056_53080125	0.496126	UUGGUCC	BC029692|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14	AK044725|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14	AK080732|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14	BC031753|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14	NM_145963|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14	AK030711|Kcnj14|211480|potassium inwardly-rectifying channel, subfamily J, member 14
mm9_v1_chr4_+_135841981_135841996	0.486308	UUGGUCC	AK053652|Zfp46|22704|zinc finger protein 46	NM_009557|Zfp46|22704|zinc finger protein 46	AK173240|Zfp46|22704|zinc finger protein 46
mm9_v1_chr11_-_100599413_100599524	0.469695	UUGGUCC	AK134691|Rab5c|19345|RAB5C, member RAS oncogene family	BC029678|Rab5c|19345|RAB5C, member RAS oncogene family	NM_024456|Rab5c|19345|RAB5C, member RAS oncogene family	BC023027|Rab5c|19345|RAB5C, member RAS oncogene family	AK172328|Rab5c|19345|RAB5C, member RAS oncogene family	AK159832|Rab5c|19345|RAB5C, member RAS oncogene family	AK167599|Rab5c|19345|RAB5C, member RAS oncogene family	AK089199|Rab5c|19345|RAB5C, member RAS oncogene family	AK170540|Rab5c|19345|RAB5C, member RAS oncogene family
mm9_v1_chr19_+_6334978_6335113	0.466277	UUGGUCC	NM_001168488|Men1|17283|multiple endocrine neoplasia 1	NM_001168489|Men1|17283|multiple endocrine neoplasia 1	AK154371|Men1|17283|multiple endocrine neoplasia 1	AF016398|Men1|17283|multiple endocrine neoplasia 1	AF109389|Men1|17283|multiple endocrine neoplasia 1	NM_001168490|Men1|17283|multiple endocrine neoplasia 1	NM_008583|Men1|17283|multiple endocrine neoplasia 1	BC006610|Men1|17283|multiple endocrine neoplasia 1	AF072755|Men1|17283|multiple endocrine neoplasia 1	AF130368|Men1|17283|multiple endocrine neoplasia 1	AK133984|Men1|17283|multiple endocrine neoplasia 1	AK164700|Men1|17283|multiple endocrine neoplasia 1	AK170713|Men1|17283|multiple endocrine neoplasia 1	BC036287|Men1|17283|multiple endocrine neoplasia 1
mm9_v1_chr15_-_84686558_84686558	0.45163	UUGGUCC	AK046530|Phf21b|271305|PHD finger protein 21B	NM_001081166|Phf21b|271305|PHD finger protein 21B
mm9_v1_chr8_-_35209773_35209872	0.443102	UUGGUCC	AK159401|Leprotl1|68192|leptin receptor overlapping transcript-like 1	BC004677|Leprotl1|68192|leptin receptor overlapping transcript-like 1	NM_026609|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK003329|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK153277|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK075740|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK150289|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK154712|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK013870|Leprotl1|68192|leptin receptor overlapping transcript-like 1
mm9_v1_chr10_-_13194201_13194201	0.430139	UUGGUCC	BC012871|Phactr2|215789|phosphatase and actin regulator 2	NM_001195065|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr11_-_95926589_95926740	0.414309	UUGGUCC	AK077793|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	AK149770|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	NM_172300|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)
mm9_v1_chr1_-_133423902_133423973	0.383497	UUGGUCC	AK143649|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2	NM_001081011|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2
mm9_v1_chr9_+_86465577_86465659	0.374219	UUGGUCC	NM_001145969|Rwdd2a|69519|RWD domain containing 2A	AK006533|Rwdd2a|69519|RWD domain containing 2A	BC115691|Rwdd2a|69519|RWD domain containing 2A	BC115692|Rwdd2a|69519|RWD domain containing 2A	NM_001145968|Rwdd2a|69519|RWD domain containing 2A	NM_027100|Rwdd2a|69519|RWD domain containing 2A
mm9_v1_chr15_-_103170514_103170552	0.365472	UUGGUCC	AF118566|Zfp385a|29813|zinc finger protein 385A	NM_013866|Zfp385a|29813|zinc finger protein 385A	AK137748|Zfp385a|29813|zinc finger protein 385A
mm9_v1_chr18_-_25324465_25324465	0.354837	UUGGUCC	NM_001142697|5730494M16Rik|66648|RIKEN cDNA 5730494M16 gene
mm9_v1_chr14_-_125076242_125076348	0.353626	UUGGUCC	BC107003|Fgf14|14169|fibroblast growth factor 14	BC107004|Fgf14|14169|fibroblast growth factor 14	AK079100|Fgf14|14169|fibroblast growth factor 14	NM_207667|Fgf14|14169|fibroblast growth factor 14
mm9_v1_chr1_+_173080843_173080843	0.345081	UUGGUCC	AK089180|Mpz|17528|myelin protein zero	NM_008623|Mpz|17528|myelin protein zero
mm9_v1_chr11_-_97605846_97606123	0.334903	UUGGUCC	AY050219|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK170392|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK037013|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK171497|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK089414|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	BC047282|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	NM_054051|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK146559|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
mm9_v1_chr3_+_135488454_135488592	0.330794	UUGGUCC	AK028215|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	NM_026228|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	AK016853|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8
mm9_v1_chr3_-_36374739_36374822	0.322411	UUGGUCC	NM_009673|Anxa5|11747|annexin A5
mm9_v1_chr19_+_54119671_54119753	0.312046	UUGGUCC	NM_007417|Adra2a|11551|adrenergic receptor, alpha 2a	AK141573|Adra2a|11551|adrenergic receptor, alpha 2a	AK140461|Adra2a|11551|adrenergic receptor, alpha 2a	AK046802|Adra2a|11551|adrenergic receptor, alpha 2a
mm9_v1_chr6_-_92851434_92851434	0.306944	UUGGUCC	NM_175314|Adamts9|101401|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9
mm9_v1_chr11_-_69485842_69485924	0.278422	UUGGUCC	NM_001159375|Eif4a1|13681|eukaryotic translation initiation factor 4A1	NM_144958|Eif4a1|13681|eukaryotic translation initiation factor 4A1
mm9_v1_chr11_+_68913653_68913659	0.269284	UUGGUCC	AK148202|Per1|18626|period homolog 1 (Drosophila)	AK172958|Per1|18626|period homolog 1 (Drosophila)	NM_001159367|Per1|18626|period homolog 1 (Drosophila)
mm9_v1_chrX_+_90531783_90531984	0.262727	UUGGUCC	AB006103|Arx|11878|aristaless related homeobox	BC052033|Arx|11878|aristaless related homeobox	NM_007492|Arx|11878|aristaless related homeobox
mm9_v1_chr5_-_31829101_31829134	0.261599	UUGGUCC	AK047063|Supt7l|72195|suppressor of Ty 7 (S. cerevisiae)-like	AK144989|Supt7l|72195|suppressor of Ty 7 (S. cerevisiae)-like	NM_028150|Supt7l|72195|suppressor of Ty 7 (S. cerevisiae)-like
mm9_v1_chr2_+_62502329_62502489	0.256948	UUGGUCC	AK046347|Gca|227960|grancalcin	AK050540|Gca|227960|grancalcin	AK033740|Gca|227960|grancalcin	AK040549|Gca|227960|grancalcin	AK049317|Gca|227960|grancalcin	AK078915|Gca|227960|grancalcin	NM_145523|Gca|227960|grancalcin	AF518325|Gca|227960|grancalcin	BC021450|Gca|227960|grancalcin	AB088388|Gca|227960|grancalcin
mm9_v1_chr11_+_105153956_105154033	0.248405	UUGGUCC	AK054150|Mrc2|17534|mannose receptor, C type 2	NM_008626|Mrc2|17534|mannose receptor, C type 2	AK028157|Mrc2|17534|mannose receptor, C type 2	U56734|Mrc2|17534|mannose receptor, C type 2	BC116642|Mrc2|17534|mannose receptor, C type 2
mm9_v1_chr19_+_8816292_8816349	0.228433	UUGGUCC	AK166087|Stx5a|56389|syntaxin 5A	NM_019829|Stx5a|56389|syntaxin 5A	BC021883|Stx5a|56389|syntaxin 5A
mm9_v1_chr10_+_121885554_121885627	0.215816	UUGGUCC	D49730|Avpr1a|54140|arginine vasopressin receptor 1A	NM_016847|Avpr1a|54140|arginine vasopressin receptor 1A	BC024149|Avpr1a|54140|arginine vasopressin receptor 1A	AK149578|Avpr1a|54140|arginine vasopressin receptor 1A	AK155952|Avpr1a|54140|arginine vasopressin receptor 1A	AK137203|Avpr1a|54140|arginine vasopressin receptor 1A
mm9_v1_chr7_+_138703898_138703948	0.212778	UUGGUCC	AK088534|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	AK138004|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	NM_009774|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	U67327|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	BC086790|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	AK190618|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)
mm9_v1_chr8_+_3621533_3621602	0.209275	UUGGUCC	AK013674|2900053A13Rik|554362|RIKEN cDNA 2900053A13 gene	AK079971|2900053A13Rik|554362|RIKEN cDNA 2900053A13 gene	NM_001195244|2900053A13Rik|554362|RIKEN cDNA 2900053A13 gene	AK011549|2900053A13Rik|554362|RIKEN cDNA 2900053A13 gene
mm9_v1_chr4_+_10801637_10801754	0.177069	UUGGUCC	NM_026005|2610301B20Rik|67157|RIKEN cDNA 2610301B20 gene	AK011950|2610301B20Rik|67157|RIKEN cDNA 2610301B20 gene	AK146358|2610301B20Rik|67157|RIKEN cDNA 2610301B20 gene	BC058777|2610301B20Rik|67157|RIKEN cDNA 2610301B20 gene
mm9_v1_chrX_-_141921588_141921636	0.155763	UUGGUCC	AF461135|Amot|27494|angiomotin	NM_153319|Amot|27494|angiomotin	BC057638|Amot|27494|angiomotin
mm9_v1_chrX_-_49154409_49154409	0.141448	UUGGUCC	AK133417|Usp26|83563|ubiquitin specific peptidase 26	NM_031388|Usp26|83563|ubiquitin specific peptidase 26
mm9_v1_chr9_+_122026378_122026421	0.127761	UUGGUCC	NM_001164572|Snrk|20623|SNF related kinase	NM_133741|Snrk|20623|SNF related kinase
mm9_v1_chr10_-_13108775_13108775	0.123986	UUGGUCC	AK139466|Phactr2|215789|phosphatase and actin regulator 2	NM_001195066|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chrX_-_101396356_101396482	0.119471	UUGGUCC	AK220439|C77370|245555|expressed sequence C77370	DQ975302|C77370|245555|expressed sequence C77370	DQ975303|C77370|245555|expressed sequence C77370	NM_001077354|C77370|245555|expressed sequence C77370	AK038635|C77370|245555|expressed sequence C77370
mm9_v1_chr11_+_115891591_115891668	0.101776	UUGGUCC	AK077635|Unk|217331|unkempt homolog (Drosophila)	AK046395|Unk|217331|unkempt homolog (Drosophila)	NM_172569|Unk|217331|unkempt homolog (Drosophila)	AK078095|Unk|217331|unkempt homolog (Drosophila)	AK129438|Unk|217331|unkempt homolog (Drosophila)
mm9_v1_chr7_-_34953455_34953570	0.0992406	UUGGUCC	AK178317|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK184258|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK189465|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK192304|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK194855|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK204958|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK213601|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK219234|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK219985|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK169168|Uba2|50995|ubiquitin-like modifier activating enzyme 2	U35833|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK163451|Uba2|50995|ubiquitin-like modifier activating enzyme 2	NM_016682|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK151765|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK152977|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK168673|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK164826|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK165321|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK152415|Uba2|50995|ubiquitin-like modifier activating enzyme 2
mm9_v1_chr13_+_21404071_21404118	0.0944675	UUGGUCC	NM_145451|Gpx6|75512|glutathione peroxidase 6	BC013526|Gpx6|75512|glutathione peroxidase 6
mm9_v1_chr11_+_75492764_75492890	0.0714471	UUGGUCC	AK154987|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK028179|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK163291|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK152549|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK088519|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK052795|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK139089|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK036905|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK028488|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	NM_133656|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK161356|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK161761|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	BC012216|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	BC031149|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	S72408|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AF239673|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm9_v1_chr15_-_97738692_97738754	0.0658282	UUGGUCC	BC006716|Vdr|22337|vitamin D receptor	D31969|Vdr|22337|vitamin D receptor	AK154647|Vdr|22337|vitamin D receptor	AK030339|Vdr|22337|vitamin D receptor	NM_009504|Vdr|22337|vitamin D receptor	AK156789|Vdr|22337|vitamin D receptor
mm9_v1_chr1_+_138364511_138364534	0.022812	UUGGUCC	BC158132|Kif14|381293|kinesin family member 14	NM_001081258|Kif14|381293|kinesin family member 14
mm9_v1_chr7_+_99890204_99890223	0.00995546	UUGGUCC	AK142206|Rab30|75985|RAB30, member RAS oncogene family	BC017550|Rab30|75985|RAB30, member RAS oncogene family	NM_029494|Rab30|75985|RAB30, member RAS oncogene family
mm9_v1_chr4_+_130348406_130348575	0.00650074	UUGGUCC	AK129153|Sdc3|20970|syndecan 3	NM_011520|Sdc3|20970|syndecan 3	AK155127|Sdc3|20970|syndecan 3	BC054795|Sdc3|20970|syndecan 3	BC062093|Sdc3|20970|syndecan 3	U52826|Sdc3|20970|syndecan 3
mm9_v1_chr3_-_65196395_65196552	0.00582117	UUGGUCC	AK192841|Ssr3|67437|signal sequence receptor, gamma	AK194871|Ssr3|67437|signal sequence receptor, gamma	AK199053|Ssr3|67437|signal sequence receptor, gamma	AK206034|Ssr3|67437|signal sequence receptor, gamma	BC020335|Ssr3|67437|signal sequence receptor, gamma	CT010172|Ssr3|67437|signal sequence receptor, gamma	AK150255|Ssr3|67437|signal sequence receptor, gamma	AK002818|Ssr3|67437|signal sequence receptor, gamma	AK029353|Ssr3|67437|signal sequence receptor, gamma	NM_026155|Ssr3|67437|signal sequence receptor, gamma	AK088555|Ssr3|67437|signal sequence receptor, gamma	BC011111|Ssr3|67437|signal sequence receptor, gamma	AK076235|Ssr3|67437|signal sequence receptor, gamma
mm9_v1_chr11_+_68781623_68781690	0.00366349	UUGGUCC	AK171131|Slc25a35|71998|solute carrier family 25, member 35	AK007453|Slc25a35|71998|solute carrier family 25, member 35	NM_028048|Slc25a35|71998|solute carrier family 25, member 35	AK157873|Slc25a35|71998|solute carrier family 25, member 35	AK035739|Slc25a35|71998|solute carrier family 25, member 35	BC019996|Slc25a35|71998|solute carrier family 25, member 35
