mm9_v1_chr4_-_110024513_110024515	7.36095	UUGUUCG	AF041341|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163397|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr7_-_119302546_119302570	7.00322	UUGUUCG	AF177400|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	AJ243964|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	AK004853|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	NM_015814|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)
mm9_v1_chr4_-_91038729_91038745	6.98754	UUGUUCG	U29088|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_010486|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207686|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr4_-_91066674_91066674	6.37414	UUGUUCG	BC049125|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	BC058393|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207685|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr4_-_91042997_91043190	6.28522	UUGUUCG	AK149201|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	AK141919|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_001177883|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr9_+_59598963_59599005	5.69311	UUGUUCG	NM_173018|Myo9a|270163|myosin IXa	AK048681|Myo9a|270163|myosin IXa
mm9_v1_chr4_-_109959366_109959438	5.65201	UUGUUCG	BC048159|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163399|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_010488|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr15_+_54402914_54402981	5.32821	UUGUUCG	NM_178920|Mal2|105853|mal, T-cell differentiation protein 2
mm9_v1_chr11_-_20731016_20731238	4.832	UUGUUCG	AK041053|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK167557|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	BC019131|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	NM_173752|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK156350|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene
mm9_v1_chr8_+_56040080_56040120	4.82057	UUGUUCG	NM_153581|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr3_+_5218545_5218658	4.62538	UUGUUCG	AK084213|Zfhx4|80892|zinc finger homeodomain 4	BC061199|Zfhx4|80892|zinc finger homeodomain 4	NM_030708|Zfhx4|80892|zinc finger homeodomain 4	AK044540|Zfhx4|80892|zinc finger homeodomain 4
mm9_v1_chr18_-_61560053_61560099	4.50303	UUGUUCG	AK028464|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	BC150699|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	AK086111|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	AF453324|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	NM_133249|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta
mm9_v1_chr4_-_109960078_109960115	4.34956	UUGUUCG	BC052451|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AF041342|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK079088|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001038698|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr12_-_51750204_51750242	4.12678	UUGUUCG	NM_008858|Prkd1|18760|protein kinase D1
mm9_v1_chr3_+_64913564_64913693	3.98767	UUGUUCG	BC014701|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	NM_010597|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	U65591|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm9_v1_chr3_+_122432075_122432112	3.79751	UUGUUCG	AF541937|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	NM_153422|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	BC119137|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	BC120486|Pde5a|242202|phosphodiesterase 5A, cGMP-specific
mm9_v1_chr1_-_166388431_166388540	3.78387	UUGUUCG	AK010677|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	NM_009721|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr19_-_4906607_4906628	3.74905	UUGUUCG	AK037753|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	BC076577|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK161343|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK045850|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK168901|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	NM_001033128|Bbs1|52028|Bardet-Biedl syndrome 1 (human)
mm9_v1_chr5_-_100588826_100588826	3.72229	UUGUUCG	BC055321|Tmem150c|231503|transmembrane protein 150C	NM_182841|Tmem150c|231503|transmembrane protein 150C
mm9_v1_chr8_-_30330079_30330107	3.54365	UUGUUCG	AJ487854|Unc5d|210801|unc-5 homolog D (C. elegans)	NM_153135|Unc5d|210801|unc-5 homolog D (C. elegans)
mm9_v1_chr15_+_82105322_82105458	3.53649	UUGUUCG	AF104411|Sept3|24050|septin 3	NM_011889|Sept3|24050|septin 3	BC055738|Sept3|24050|septin 3
mm9_v1_chr19_+_27291507_27291624	3.52741	UUGUUCG	AK044683|Vldlr|22359|very low density lipoprotein receptor	AK076172|Vldlr|22359|very low density lipoprotein receptor	NM_001161420|Vldlr|22359|very low density lipoprotein receptor	NM_013703|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr14_-_19726121_19726326	3.51887	UUGUUCG	BC016265|Ube2e2|218793|ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast)	NM_144839|Ube2e2|218793|ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast)
mm9_v1_chr1_-_123224303_123224398	3.51204	UUGUUCG	BC015288|Insig2|72999|insulin induced gene 2	AK152076|Insig2|72999|insulin induced gene 2	AF527631|Insig2|72999|insulin induced gene 2	AY156085|Insig2|72999|insulin induced gene 2	BC023067|Insig2|72999|insulin induced gene 2	NM_133748|Insig2|72999|insulin induced gene 2	BC024411|Insig2|72999|insulin induced gene 2	AK154543|Insig2|72999|insulin induced gene 2	AK165634|Insig2|72999|insulin induced gene 2	AK161256|Insig2|72999|insulin induced gene 2
mm9_v1_chr3_-_148617598_148617598	3.45429	UUGUUCG	NM_001081298|Lphn2|99633|latrophilin 2
mm9_v1_chr1_+_78654399_78654472	3.44521	UUGUUCG	AK161708|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_001001981|Utp14b|195434|UTP14, U3 small nucleolar ribonucleoprotein, homolog B (yeast)	NM_001033606|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_001136222|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_028817|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK012088|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK160839|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK166723|Acsl3|74205|acyl-CoA synthetase long-chain family member 3
mm9_v1_chr19_-_19185685_19185685	3.41324	UUGUUCG	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr5_+_89316245_89316323	3.40874	UUGUUCG	NM_001136260|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	NM_001197147|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	NM_018760|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	HQ204220|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	AF020195|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	BC129863|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	BC148292|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	BC129864|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4
mm9_v1_chr2_+_49921978_49921983	3.36385	UUGUUCG	NM_177139|Lypd6|320343|LY6/PLAUR domain containing 6	AK053620|Lypd6|320343|LY6/PLAUR domain containing 6
mm9_v1_chr18_+_74602260_74602279	3.33809	UUGUUCG	BC030481|Myo5b|17919|myosin VB	NM_201600|Myo5b|17919|myosin VB	BC118525|Myo5b|17919|myosin VB
mm9_v1_chr1_+_133693944_133694029	3.17201	UUGUUCG	AK128969|Pm20d1|212933|peptidase M20 domain containing 1	BC120725|Pm20d1|212933|peptidase M20 domain containing 1	BC125395|Pm20d1|212933|peptidase M20 domain containing 1	NM_178079|Pm20d1|212933|peptidase M20 domain containing 1	AK028883|Pm20d1|212933|peptidase M20 domain containing 1	AK143953|Pm20d1|212933|peptidase M20 domain containing 1
mm9_v1_chr14_+_8835385_8835479	3.16558	UUGUUCG	NM_025341|Abhd6|66082|abhydrolase domain containing 6	AK090076|Abhd6|66082|abhydrolase domain containing 6	BC027011|Abhd6|66082|abhydrolase domain containing 6	AK168782|Abhd6|66082|abhydrolase domain containing 6	AK002883|Abhd6|66082|abhydrolase domain containing 6	AK011887|Abhd6|66082|abhydrolase domain containing 6	AK076105|Abhd6|66082|abhydrolase domain containing 6
mm9_v1_chrX_-_101017286_101017329	3.13921	UUGUUCG	AF045692|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2	NM_009197|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm9_v1_chr13_-_58009653_58009693	3.10727	UUGUUCG	AK049019|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	AK039058|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	X92864|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	AK036189|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166463|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166464|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166465|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166466|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_009262|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
mm9_v1_chr13_+_109444370_109444370	3.02677	UUGUUCG	AF536978|Pde4d|238871|phosphodiesterase 4D, cAMP specific	NM_011056|Pde4d|238871|phosphodiesterase 4D, cAMP specific
mm9_v1_chr2_-_155755998_155756045	2.99167	UUGUUCG	BC050884|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)	BC057570|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)	AK139488|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)	NM_018888|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)
mm9_v1_chr7_-_123174560_123174560	2.9563	UUGUUCG	AK030713|Sox6|20679|SRY-box containing gene 6	NM_001025560|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr14_+_64225366_64225366	2.93503	UUGUUCG	NM_173393|Xkr6|219149|X Kell blood group precursor related family member 6 homolog
mm9_v1_chr6_-_87285690_87285768	2.9124	UUGUUCG	AF378762|Antxr1|69538|anthrax toxin receptor 1	BC094544|Antxr1|69538|anthrax toxin receptor 1	AK031465|Antxr1|69538|anthrax toxin receptor 1	NM_054041|Antxr1|69538|anthrax toxin receptor 1
mm9_v1_chr1_+_183081058_183081062	2.86445	UUGUUCG	NM_030131|Cnih4|98417|cornichon homolog 4 (Drosophila)
mm9_v1_chr9_+_47338431_47338446	2.85048	UUGUUCG	AB052293|Cadm1|54725|cell adhesion molecule 1	AB377192|Cadm1|54725|cell adhesion molecule 1	AK053839|Cadm1|54725|cell adhesion molecule 1	NM_001025600|Cadm1|54725|cell adhesion molecule 1	NM_018770|Cadm1|54725|cell adhesion molecule 1	NM_207675|Cadm1|54725|cell adhesion molecule 1	NM_207676|Cadm1|54725|cell adhesion molecule 1	AF539424|Cadm1|54725|cell adhesion molecule 1	BC095986|Cadm1|54725|cell adhesion molecule 1	BC069937|Cadm1|54725|cell adhesion molecule 1	BC057125|Cadm1|54725|cell adhesion molecule 1
mm9_v1_chr15_+_100701068_100701116	2.78063	UUGUUCG	NM_001077499|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AK158609|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr14_-_118636251_118636251	2.7347	UUGUUCG	NM_177753|Sox21|223227|SRY-box containing gene 21
mm9_v1_chr15_+_100766701_100766755	2.71768	UUGUUCG	NM_011323|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	U26707|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AF049617|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr7_-_123138599_123138599	2.68411	UUGUUCG	NM_011445|Sox6|20679|SRY-box containing gene 6	U32614|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr17_+_27792587_27792658	2.67721	UUGUUCG	BC014698|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1	NM_011861|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1	X85124|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1
mm9_v1_chr12_-_60112987_60113003	2.62496	UUGUUCG	BC034610|Sec23a|20334|SEC23A (S. cerevisiae)	NM_009147|Sec23a|20334|SEC23A (S. cerevisiae)
mm9_v1_chr3_-_108029499_108029565	2.59455	UUGUUCG	BC030038|Sypl2|17306|synaptophysin-like 2	AB010140|Sypl2|17306|synaptophysin-like 2	NM_008596|Sypl2|17306|synaptophysin-like 2	AK082471|Sypl2|17306|synaptophysin-like 2	AK162663|Sypl2|17306|synaptophysin-like 2	AK052749|Sypl2|17306|synaptophysin-like 2	AK083422|Sypl2|17306|synaptophysin-like 2
mm9_v1_chrX_+_97972559_97972657	2.57997	UUGUUCG	NM_001177780|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK159655|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK167365|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK148464|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr6_+_135148004_135148077	2.57375	UUGUUCG	AK169892|8430419L09Rik|74525|RIKEN cDNA 8430419L09 gene	NM_028982|8430419L09Rik|74525|RIKEN cDNA 8430419L09 gene	BC137674|8430419L09Rik|74525|RIKEN cDNA 8430419L09 gene	BC137676|8430419L09Rik|74525|RIKEN cDNA 8430419L09 gene	AK018428|8430419L09Rik|74525|RIKEN cDNA 8430419L09 gene	AK155128|8430419L09Rik|74525|RIKEN cDNA 8430419L09 gene	AK039401|8430419L09Rik|74525|RIKEN cDNA 8430419L09 gene	BC079676|8430419L09Rik|74525|RIKEN cDNA 8430419L09 gene
mm9_v1_chr18_+_9212853_9212853	2.5733	UUGUUCG	BC132543|Fzd8|14370|frizzled homolog 8 (Drosophila)	BC138062|Fzd8|14370|frizzled homolog 8 (Drosophila)	NM_008058|Fzd8|14370|frizzled homolog 8 (Drosophila)
mm9_v1_chr2_+_67955769_67955862	2.55817	UUGUUCG	NM_020283|B3galt1|26877|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	BC094660|B3galt1|26877|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	BC132246|B3galt1|26877|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	BC132528|B3galt1|26877|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm9_v1_chr7_-_17200285_17200343	2.53097	UUGUUCG	BC139459|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	BC139461|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	AK147326|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	AK147688|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	NM_172739|Grlf1|232906|glucocorticoid receptor DNA binding factor 1
mm9_v1_chr7_+_94732677_94732677	2.45061	UUGUUCG	NM_001081414|Grm5|108071|glutamate receptor, metabotropic 5	NM_001143834|Grm5|108071|glutamate receptor, metabotropic 5
mm9_v1_chr4_-_151235861_151235879	2.42292	UUGUUCG	AK158710|Camta1|100072|calmodulin binding transcription activator 1	NM_001081557|Camta1|100072|calmodulin binding transcription activator 1	NM_001195565|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr9_+_44925922_44925963	2.40643	UUGUUCG	NM_001014761|Scn2b|72821|sodium channel, voltage-gated, type II, beta	AB118947|Scn2b|72821|sodium channel, voltage-gated, type II, beta	BC092225|Scn2b|72821|sodium channel, voltage-gated, type II, beta
mm9_v1_chr10_-_53470714_53470714	2.40503	UUGUUCG	AK015334|Fam184a|75906|family with sequence similarity 184, member A	NM_001081428|Fam184a|75906|family with sequence similarity 184, member A
mm9_v1_chr8_+_128193717_128193790	2.38127	UUGUUCG	NM_028908|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene	AK042358|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene	AK016632|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene	AK080043|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene	AK220388|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene
mm9_v1_chr5_+_104888468_104888623	2.36835	UUGUUCG	BC053058|Pkd2|18764|polycystic kidney disease 2	BC062969|Pkd2|18764|polycystic kidney disease 2	NM_008861|Pkd2|18764|polycystic kidney disease 2	FJ609779|Pkd2|18764|polycystic kidney disease 2	Y13278|Pkd2|18764|polycystic kidney disease 2	AK053502|Pkd2|18764|polycystic kidney disease 2	AF014010|Pkd2|18764|polycystic kidney disease 2	AK164673|Pkd2|18764|polycystic kidney disease 2	AK128961|Pkd2|18764|polycystic kidney disease 2
mm9_v1_chr11_-_18918923_18918971	2.34465	UUGUUCG	AK032947|Meis1|17268|Meis homeobox 1	AK049720|Meis1|17268|Meis homeobox 1	BC023689|Meis1|17268|Meis homeobox 1	AK168684|Meis1|17268|Meis homeobox 1	AK134321|Meis1|17268|Meis homeobox 1	AK140748|Meis1|17268|Meis homeobox 1	NM_001193271|Meis1|17268|Meis homeobox 1	NM_010789|Meis1|17268|Meis homeobox 1
mm9_v1_chr14_-_104243379_104243389	2.34387	UUGUUCG	AK083415|Ednrb|13618|endothelin receptor type B	NM_001136061|Ednrb|13618|endothelin receptor type B
mm9_v1_chr14_+_76354807_76354815	2.33775	UUGUUCG	AK004465|Kctd4|67516|potassium channel tetramerisation domain containing 4	NM_026214|Kctd4|67516|potassium channel tetramerisation domain containing 4	AK008741|Kctd4|67516|potassium channel tetramerisation domain containing 4
mm9_v1_chr6_+_30688050_30688066	2.29509	UUGUUCG	AK031718|Mest|17294|mesoderm specific transcript	AK032881|Mest|17294|mesoderm specific transcript	AK034949|Mest|17294|mesoderm specific transcript	AK146457|Mest|17294|mesoderm specific transcript	AK168714|Mest|17294|mesoderm specific transcript	AK168732|Mest|17294|mesoderm specific transcript	AK168743|Mest|17294|mesoderm specific transcript	AK168995|Mest|17294|mesoderm specific transcript	AK169095|Mest|17294|mesoderm specific transcript	AK169266|Mest|17294|mesoderm specific transcript	D16262|Mest|17294|mesoderm specific transcript	NM_008590|Mest|17294|mesoderm specific transcript	BC006639|Mest|17294|mesoderm specific transcript
mm9_v1_chr13_+_9275741_9275783	2.29093	UUGUUCG	NM_001081426|Dip2c|208440|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm9_v1_chr12_-_103981869_103981884	2.25168	UUGUUCG	NM_001142937|Moap1|64113|modulator of apoptosis 1	NM_022323|Moap1|64113|modulator of apoptosis 1
mm9_v1_chr18_+_23962468_23962588	2.19496	UUGUUCG	NM_153058|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK038562|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK140595|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK040767|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK045904|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK148954|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK046221|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC027056|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC035254|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC025804|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK050527|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK148480|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK046095|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK088734|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC028987|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK045493|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr11_-_3763899_3763908	2.12539	UUGUUCG	AK049816|Osbp2|74309|oxysterol binding protein 2	NM_152818|Osbp2|74309|oxysterol binding protein 2
mm9_v1_chr2_-_12932442_12932490	2.12531	UUGUUCG	EU399230|C1ql3|227580|C1q-like 3	BC024634|C1ql3|227580|C1q-like 3	NM_153155|C1ql3|227580|C1q-like 3
mm9_v1_chr11_-_78510874_78510941	2.10875	UUGUUCG	BC058652|Nlk|18099|nemo like kinase	NM_008702|Nlk|18099|nemo like kinase
mm9_v1_chr2_+_49474775_49474833	2.05986	UUGUUCG	BC067051|Kif5c|16574|kinesin family member 5C	NM_008449|Kif5c|16574|kinesin family member 5C
mm9_v1_chr12_-_106923394_106923487	2.04624	UUGUUCG	AK085790|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	AK083213|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	BC062182|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	AK086802|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	NM_029654|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)
mm9_v1_chr5_+_136293975_136293975	2.03195	UUGUUCG	BC058385|Srrm3|58212|serine/arginine repetitive matrix 3	NM_021403|Srrm3|58212|serine/arginine repetitive matrix 3
mm9_v1_chr9_-_21856445_21856470	1.99951	UUGUUCG	U29148|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	BC052097|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	AK090281|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	NM_010487|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)
mm9_v1_chr1_-_176851949_176851953	1.97513	UUGUUCG	AB011030|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	NM_011825|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	AK142008|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm9_v1_chr11_-_84953442_84953491	1.95688	UUGUUCG	AK170234|Usp32|237898|ubiquitin specific peptidase 32	AK148221|Usp32|237898|ubiquitin specific peptidase 32	NM_001029934|Usp32|237898|ubiquitin specific peptidase 32
mm9_v1_chr1_+_133904162_133904241	1.95206	UUGUUCG	NM_007923|Elk4|13714|ELK4, member of ETS oncogene family	AK156537|Elk4|13714|ELK4, member of ETS oncogene family
mm9_v1_chr4_+_142939652_142939691	1.94166	UUGUUCG	BC129964|Lrrc38|242735|leucine rich repeat containing 38	NM_001162983|Lrrc38|242735|leucine rich repeat containing 38	BC129963|Lrrc38|242735|leucine rich repeat containing 38	AK078190|Lrrc38|242735|leucine rich repeat containing 38	AK038658|Lrrc38|242735|leucine rich repeat containing 38
mm9_v1_chr2_-_121282428_121282516	1.92581	UUGUUCG	BC026459|Serinc4|574418|serine incorporator 4	BC083132|Serinc4|574418|serine incorporator 4	NM_001025371|Serinc4|574418|serine incorporator 4	AK044479|Serinc4|574418|serine incorporator 4
mm9_v1_chr3_-_122687238_122687429	1.91352	UUGUUCG	AK040332|Usp53|99526|ubiquitin specific peptidase 53	AK140453|Usp53|99526|ubiquitin specific peptidase 53	BC096383|Usp53|99526|ubiquitin specific peptidase 53	AK036876|Usp53|99526|ubiquitin specific peptidase 53	NM_133857|Usp53|99526|ubiquitin specific peptidase 53	AK030317|Usp53|99526|ubiquitin specific peptidase 53	AK045953|Usp53|99526|ubiquitin specific peptidase 53
mm9_v1_chrX_+_97969784_97969833	1.89355	UUGUUCG	NM_001177779|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr5_-_108304062_108304125	1.89065	UUGUUCG	AK165332|Evi5|14020|ecotropic viral integration site 5	BC030056|Evi5|14020|ecotropic viral integration site 5	NM_007964|Evi5|14020|ecotropic viral integration site 5	U53586|Evi5|14020|ecotropic viral integration site 5
mm9_v1_chr15_-_98438063_98438063	1.87782	UUGUUCG	AK147516|Adcy6|11512|adenylate cyclase 6	NM_007405|Adcy6|11512|adenylate cyclase 6
mm9_v1_chr3_+_105255247_105255337	1.86309	UUGUUCG	NM_001039347|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AK147574|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr3_-_107957795_107957821	1.86195	UUGUUCG	AK032627|Gpr61|229714|G protein-coupled receptor 61	AK133702|Gpr61|229714|G protein-coupled receptor 61	NM_175470|Gpr61|229714|G protein-coupled receptor 61
mm9_v1_chr9_-_42913797_42913909	1.83955	UUGUUCG	AK009331|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12	AK122267|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12	NM_027144|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12
mm9_v1_chr7_-_25857275_25857387	1.83347	UUGUUCG	BC052009|Grik5|14809|glutamate receptor, ionotropic, kainate 5 (gamma 2)	BC110682|Grik5|14809|glutamate receptor, ionotropic, kainate 5 (gamma 2)	D10011|Grik5|14809|glutamate receptor, ionotropic, kainate 5 (gamma 2)	NM_008168|Grik5|14809|glutamate receptor, ionotropic, kainate 5 (gamma 2)
mm9_v1_chrX_+_97963061_97963090	1.83195	UUGUUCG	AK122474|Dlg3|53310|discs, large homolog 3 (Drosophila)	NM_001177778|Dlg3|53310|discs, large homolog 3 (Drosophila)	BC094368|Dlg3|53310|discs, large homolog 3 (Drosophila)	NM_016747|Dlg3|53310|discs, large homolog 3 (Drosophila)	D87117|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr15_-_100325669_100325697	1.80487	UUGUUCG	BC035295|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	NM_153407|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK146924|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK050864|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK166557|Csrnp2|207785|cysteine-serine-rich nuclear protein 2
mm9_v1_chr13_-_76081244_76081314	1.80483	UUGUUCG	BC005664|Rhobtb3|73296|Rho-related BTB domain containing 3	BC050836|Rhobtb3|73296|Rho-related BTB domain containing 3	NM_028493|Rhobtb3|73296|Rho-related BTB domain containing 3	AK129234|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr8_+_28134259_28134401	1.80195	UUGUUCG	BC036333|Erlin2|244373|ER lipid raft associated 2	AK030557|Erlin2|244373|ER lipid raft associated 2	BC038374|Erlin2|244373|ER lipid raft associated 2	NM_153592|Erlin2|244373|ER lipid raft associated 2
mm9_v1_chr3_-_82707880_82707898	1.78823	UUGUUCG	AF255061|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	AK004953|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	NM_023624|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)
mm9_v1_chr15_+_8918001_8918118	1.78735	UUGUUCG	AK048152|Ranbp3l|223332|RAN binding protein 3-like	AK132406|Ranbp3l|223332|RAN binding protein 3-like	BC058706|Ranbp3l|223332|RAN binding protein 3-like	NM_198024|Ranbp3l|223332|RAN binding protein 3-like
mm9_v1_chr4_-_98484163_98484227	1.75426	UUGUUCG	AK081525|Kank4|242553|KN motif and ankyrin repeat domains 4	BC060737|Kank4|242553|KN motif and ankyrin repeat domains 4	NM_172872|Kank4|242553|KN motif and ankyrin repeat domains 4
mm9_v1_chr7_+_31844947_31844953	1.74842	UUGUUCG	AJ487521|Lgi4|243914|leucine-rich repeat LGI family, member 4	AJ487960|Lgi4|243914|leucine-rich repeat LGI family, member 4	NM_144556|Lgi4|243914|leucine-rich repeat LGI family, member 4
mm9_v1_chr7_+_73007017_73007098	1.73652	UUGUUCG	NM_011048|Pcsk6|18553|proprotein convertase subtilisin/kexin type 6	D50060|Pcsk6|18553|proprotein convertase subtilisin/kexin type 6
mm9_v1_chr18_-_61946299_61946348	1.73233	UUGUUCG	AK053714|Afap1l1|106877|actin filament associated protein 1-like 1	AK035227|Afap1l1|106877|actin filament associated protein 1-like 1	NM_178928|Afap1l1|106877|actin filament associated protein 1-like 1
mm9_v1_chr10_+_24315247_24315401	1.7316	UUGUUCG	NM_010217|Ctgf|14219|connective tissue growth factor	BC006783|Ctgf|14219|connective tissue growth factor	M80263|Ctgf|14219|connective tissue growth factor	M70642|Ctgf|14219|connective tissue growth factor
mm9_v1_chr9_-_8004559_8004652	1.71606	UUGUUCG	BC094313|Yap1|22601|yes-associated protein 1	BC014733|Yap1|22601|yes-associated protein 1	X80508|Yap1|22601|yes-associated protein 1	AK157234|Yap1|22601|yes-associated protein 1	NM_001171147|Yap1|22601|yes-associated protein 1	NM_009534|Yap1|22601|yes-associated protein 1
mm9_v1_chr19_-_19075535_19075606	1.68708	UUGUUCG	DQ779924|Rorb|225998|RAR-related orphan receptor beta	BC024768|Rorb|225998|RAR-related orphan receptor beta	AK044421|Rorb|225998|RAR-related orphan receptor beta	BC024842|Rorb|225998|RAR-related orphan receptor beta	NM_146095|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr7_+_119822831_119822885	1.68073	UUGUUCG	S74227|Tead1|21676|TEA domain family member 1	AK140307|Tead1|21676|TEA domain family member 1	NM_001166584|Tead1|21676|TEA domain family member 1	NM_009346|Tead1|21676|TEA domain family member 1	AK148375|Tead1|21676|TEA domain family member 1
mm9_v1_chr2_+_104726480_104726480	1.67915	UUGUUCG	NM_177600|Ccdc73|211936|coiled-coil domain containing 73
mm9_v1_chr3_+_108087046_108087050	1.67674	UUGUUCG	BC056343|Sort1|20661|sortilin 1	NM_019972|Sort1|20661|sortilin 1
mm9_v1_chr7_+_119902897_119902956	1.67092	UUGUUCG	NM_001166585|Tead1|21676|TEA domain family member 1	L06865|Tead1|21676|TEA domain family member 1	BC052021|Tead1|21676|TEA domain family member 1	BC060138|Tead1|21676|TEA domain family member 1
mm9_v1_chr16_-_94509462_94509462	1.66089	UUGUUCG	BC050090|Hlcs|110948|holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	NM_139145|Hlcs|110948|holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)
mm9_v1_chr13_-_52626065_52626204	1.64148	UUGUUCG	AK136096|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	AK136101|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	NM_001024474|Diras2|68203|DIRAS family, GTP-binding RAS-like 2
mm9_v1_chr4_+_43071852_43071944	1.63092	UUGUUCG	AK161056|Unc13b|22249|unc-13 homolog B (C. elegans)	NM_001081413|Unc13b|22249|unc-13 homolog B (C. elegans)	BC157967|Unc13b|22249|unc-13 homolog B (C. elegans)	BC158025|Unc13b|22249|unc-13 homolog B (C. elegans)	NM_021468|Unc13b|22249|unc-13 homolog B (C. elegans)
mm9_v1_chr7_-_123182257_123182257	1.59782	UUGUUCG	AK048143|Sox6|20679|SRY-box containing gene 6	NM_001025559|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr10_+_19654195_19654331	1.58119	UUGUUCG	AB006787|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5	BC116627|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5	BC116628|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5	BC133697|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5	NM_008580|Map3k5|26408|mitogen-activated protein kinase kinase kinase 5
mm9_v1_chrX_+_130593867_130593899	1.57743	UUGUUCG	AK147438|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2	AK088260|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2	NM_133196|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2
mm9_v1_chr12_+_21117592_21117662	1.57252	UUGUUCG	AK147622|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	BC080847|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001004364|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001098168|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001135192|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm9_v1_chr14_-_104242892_104242969	1.57153	UUGUUCG	U32329|Ednrb|13618|endothelin receptor type B	AK085165|Ednrb|13618|endothelin receptor type B	AK076426|Ednrb|13618|endothelin receptor type B	AK085532|Ednrb|13618|endothelin receptor type B	NM_007904|Ednrb|13618|endothelin receptor type B
mm9_v1_chr9_+_122714664_122714720	1.56996	UUGUUCG	NM_001013405|D9Ertd402e|382117|DNA segment, Chr 9, ERATO Doi 402, expressed	BC080690|D9Ertd402e|382117|DNA segment, Chr 9, ERATO Doi 402, expressed
mm9_v1_chr16_+_29209780_29209780	1.56614	UUGUUCG	AK039471|Hrasls|27281|HRAS-like suppressor	NM_013751|Hrasls|27281|HRAS-like suppressor
mm9_v1_chr15_+_97998090_97998244	1.56206	UUGUUCG	AK080988|AI836003|239650|expressed sequence AI836003	NM_177716|AI836003|239650|expressed sequence AI836003
mm9_v1_chr15_-_77949709_77949709	1.54943	UUGUUCG	AF077739|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2	NM_007583|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2
mm9_v1_chr1_+_9591347_9591354	1.53621	UUGUUCG	AK043759|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene	NM_178399|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene
mm9_v1_chr2_+_34287544_34287544	1.5017	UUGUUCG	BC090644|Mapkap1|227743|mitogen-activated protein kinase associated protein 1	NM_177345|Mapkap1|227743|mitogen-activated protein kinase associated protein 1
mm9_v1_chr6_-_14705104_14705273	1.46182	UUGUUCG	AK084719|Ppp1r3a|140491|protein phosphatase 1, regulatory (inhibitor) subunit 3A	BC109007|Ppp1r3a|140491|protein phosphatase 1, regulatory (inhibitor) subunit 3A	BC109008|Ppp1r3a|140491|protein phosphatase 1, regulatory (inhibitor) subunit 3A	AK084518|Ppp1r3a|140491|protein phosphatase 1, regulatory (inhibitor) subunit 3A	NM_080464|Ppp1r3a|140491|protein phosphatase 1, regulatory (inhibitor) subunit 3A
mm9_v1_chr2_-_103143352_103143356	1.46063	UUGUUCG	NM_007914|Ehf|13661|ets homologous factor
mm9_v1_chrX_+_137212566_137212566	1.46028	UUGUUCG	AF196480|Mid2|23947|midline 2	NM_011845|Mid2|23947|midline 2
mm9_v1_chr6_-_30643681_30643723	1.45136	UUGUUCG	BC031892|Tsga14|83922|testis specific gene A14	NM_031998|Tsga14|83922|testis specific gene A14	AK161461|Tsga14|83922|testis specific gene A14	AK166974|Tsga14|83922|testis specific gene A14	AK019270|Tsga14|83922|testis specific gene A14	AK132495|Tsga14|83922|testis specific gene A14	AJ278891|Tsga14|83922|testis specific gene A14	AK006059|Tsga14|83922|testis specific gene A14	AK170213|Tsga14|83922|testis specific gene A14
mm9_v1_chr2_-_136213509_136213702	1.45015	UUGUUCG	AK163530|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK032593|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK079080|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK013814|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	BC099417|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK077967|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	NM_172858|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7
mm9_v1_chr15_-_58654964_58655084	1.43318	UUGUUCG	BC096426|Tmem65|74868|transmembrane protein 65	NM_175212|Tmem65|74868|transmembrane protein 65	AK031886|Tmem65|74868|transmembrane protein 65	AK015335|Tmem65|74868|transmembrane protein 65
mm9_v1_chr15_-_100382354_100382438	1.42779	UUGUUCG	AK158682|Tcfcp2|21422|transcription factor CP2	M84809|Tcfcp2|21422|transcription factor CP2	NM_033476|Tcfcp2|21422|transcription factor CP2	BC022131|Tcfcp2|21422|transcription factor CP2	AK146503|Tcfcp2|21422|transcription factor CP2
mm9_v1_chr7_-_140315100_140315165	1.42653	UUGUUCG	NM_009980|Ctbp2|13017|C-terminal binding protein 2
mm9_v1_chr6_+_67216948_67217032	1.42583	UUGUUCG	AK004678|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113564|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113565|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113566|Serbp1|66870|serpine1 mRNA binding protein 1	NM_025814|Serbp1|66870|serpine1 mRNA binding protein 1	AK010860|Serbp1|66870|serpine1 mRNA binding protein 1	AK144764|Serbp1|66870|serpine1 mRNA binding protein 1	AK158095|Serbp1|66870|serpine1 mRNA binding protein 1	AK010851|Serbp1|66870|serpine1 mRNA binding protein 1	AK011051|Serbp1|66870|serpine1 mRNA binding protein 1	AK149505|Serbp1|66870|serpine1 mRNA binding protein 1	AK012390|Serbp1|66870|serpine1 mRNA binding protein 1	AK088278|Serbp1|66870|serpine1 mRNA binding protein 1	AK131990|Serbp1|66870|serpine1 mRNA binding protein 1	AK135473|Serbp1|66870|serpine1 mRNA binding protein 1	AK139670|Serbp1|66870|serpine1 mRNA binding protein 1	AK146418|Serbp1|66870|serpine1 mRNA binding protein 1	AK045190|Serbp1|66870|serpine1 mRNA binding protein 1	BC006030|Serbp1|66870|serpine1 mRNA binding protein 1	BC013665|Serbp1|66870|serpine1 mRNA binding protein 1	BC030502|Serbp1|66870|serpine1 mRNA binding protein 1
mm9_v1_chr13_-_64349830_64349845	1.37272	UUGUUCG	AK041155|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_001122989|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chrX_+_157205944_157206093	1.36051	UUGUUCG	BC046422|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)	NM_011302|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)	AF084561|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)	AF073780|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)	AJ011381|Rs1|20147|retinoschisis (X-linked, juvenile) 1 (human)
mm9_v1_chr14_-_63864060_63864107	1.35707	UUGUUCG	M98339|Gata4|14463|GATA binding protein 4	U85046|Gata4|14463|GATA binding protein 4	NM_008092|Gata4|14463|GATA binding protein 4	AB075549|Gata4|14463|GATA binding protein 4
mm9_v1_chr7_+_94395160_94395355	1.34733	UUGUUCG	AK169304|Nox4|50490|NADPH oxidase 4	AK087097|Nox4|50490|NADPH oxidase 4	AF261944|Nox4|50490|NADPH oxidase 4	AF276957|Nox4|50490|NADPH oxidase 4	AK050371|Nox4|50490|NADPH oxidase 4	AK085509|Nox4|50490|NADPH oxidase 4	AK149398|Nox4|50490|NADPH oxidase 4	AK149455|Nox4|50490|NADPH oxidase 4	AK149492|Nox4|50490|NADPH oxidase 4	NM_015760|Nox4|50490|NADPH oxidase 4	AK052905|Nox4|50490|NADPH oxidase 4	AB041034|Nox4|50490|NADPH oxidase 4	AB042745|Nox4|50490|NADPH oxidase 4	AF218723|Nox4|50490|NADPH oxidase 4	BC138918|Nox4|50490|NADPH oxidase 4	BC145462|Nox4|50490|NADPH oxidase 4	BC021378|Nox4|50490|NADPH oxidase 4	EU861989|Nox4|50490|NADPH oxidase 4
mm9_v1_chr1_-_64784316_64784324	1.34524	UUGUUCG	AK039402|Fzd5|14367|frizzled homolog 5 (Drosophila)	NM_001042659|Fzd5|14367|frizzled homolog 5 (Drosophila)	NM_022721|Fzd5|14367|frizzled homolog 5 (Drosophila)	AK030111|Fzd5|14367|frizzled homolog 5 (Drosophila)
mm9_v1_chr12_+_79327630_79327650	1.33365	UUGUUCG	AK144569|Gphn|268566|gephyrin	NM_145965|Gphn|268566|gephyrin	NM_172952|Gphn|268566|gephyrin
mm9_v1_chr15_+_102864825_102864872	1.32123	UUGUUCG	NM_013553|Hoxc4|15423|homeobox C4	X69019|Hoxc4|15423|homeobox C4	BC144778|Hoxc4|15423|homeobox C4	BC150664|Hoxc4|15423|homeobox C4
mm9_v1_chr14_+_67852128_67852128	1.31401	UUGUUCG	AK053013|Ebf2|13592|early B-cell factor 2	NM_010095|Ebf2|13592|early B-cell factor 2
mm9_v1_chr15_-_98493302_98493343	1.31385	UUGUUCG	AK014820|Ddx23|74351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	BC049928|Ddx23|74351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	NM_001080981|Ddx23|74351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	AK014272|Ddx23|74351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
mm9_v1_chr16_-_37385024_37385045	1.30417	UUGUUCG	AK043658|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114611|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114612|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114613|Stxbp5l|207227|syntaxin binding protein 5-like	NM_172440|Stxbp5l|207227|syntaxin binding protein 5-like
mm9_v1_chr2_+_169459145_169459258	1.26518	UUGUUCG	NM_080455|Tshz2|228911|teashirt zinc finger family member 2	BC079550|Tshz2|228911|teashirt zinc finger family member 2
mm9_v1_chr14_+_67530044_67530096	1.25123	UUGUUCG	AK043910|Pnma2|239157|paraneoplastic antigen MA2	NM_175498|Pnma2|239157|paraneoplastic antigen MA2	AK220357|Pnma2|239157|paraneoplastic antigen MA2	AK043718|Pnma2|239157|paraneoplastic antigen MA2
mm9_v1_chr11_-_63735652_63735808	1.251	UUGUUCG	BC116733|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	BC116743|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AF168992|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK171996|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK172015|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK172271|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	NM_018805|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK085242|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
mm9_v1_chr6_-_52163065_52163065	1.25024	UUGUUCG	NM_010452|Hoxa3|15400|homeobox A3
mm9_v1_chr1_+_106665395_106665416	1.24437	UUGUUCG	AK034475|Cdh20|23836|cadherin 20	NM_011800|Cdh20|23836|cadherin 20	BC119606|Cdh20|23836|cadherin 20	BC119607|Cdh20|23836|cadherin 20
mm9_v1_chr8_-_128016609_128016654	1.20208	UUGUUCG	NM_001081337|Sipa1l2|244668|signal-induced proliferation-associated 1 like 2	BC150682|Sipa1l2|244668|signal-induced proliferation-associated 1 like 2
mm9_v1_chr7_+_148317160_148317300	1.20118	UUGUUCG	AK036368|Ptdss2|27388|phosphatidylserine synthase 2	NM_013782|Ptdss2|27388|phosphatidylserine synthase 2	AK031906|Ptdss2|27388|phosphatidylserine synthase 2	AK048026|Ptdss2|27388|phosphatidylserine synthase 2	AK081275|Ptdss2|27388|phosphatidylserine synthase 2	AK021249|Ptdss2|27388|phosphatidylserine synthase 2	AK032686|Ptdss2|27388|phosphatidylserine synthase 2	AK137415|Ptdss2|27388|phosphatidylserine synthase 2	BC053517|Ptdss2|27388|phosphatidylserine synthase 2	AF099053|Ptdss2|27388|phosphatidylserine synthase 2
mm9_v1_chr10_-_85961630_85961659	1.19971	UUGUUCG	AK043854|Syn3|27204|synapsin III	AK087342|Syn3|27204|synapsin III	NM_001164495|Syn3|27204|synapsin III	NM_013722|Syn3|27204|synapsin III
mm9_v1_chr16_+_31428833_31428879	1.1974	UUGUUCG	AK146321|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	AK145711|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	NM_001122683|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	AK146962|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr6_-_28084368_28084420	1.17897	UUGUUCG	BC051384|Grm8|14823|glutamate receptor, metabotropic 8	NM_008174|Grm8|14823|glutamate receptor, metabotropic 8	AK038395|Grm8|14823|glutamate receptor, metabotropic 8
mm9_v1_chr3_+_94114044_94114121	1.16749	UUGUUCG	AK139993|Them4|75778|thioesterase superfamily member 4	AK138397|Them4|75778|thioesterase superfamily member 4	NM_029431|Them4|75778|thioesterase superfamily member 4	BC134396|Them4|75778|thioesterase superfamily member 4	AK014834|Them4|75778|thioesterase superfamily member 4
mm9_v1_chr1_-_182126032_182126150	1.15298	UUGUUCG	AK004791|Adck3|67426|aarF domain containing kinase 3	AK014605|Adck3|67426|aarF domain containing kinase 3	BC030937|Adck3|67426|aarF domain containing kinase 3	NM_023341|Adck3|67426|aarF domain containing kinase 3
mm9_v1_chr13_-_40825789_40825811	1.15114	UUGUUCG	U17287|Tcfap2a|21418|transcription factor AP-2, alpha	AK053704|Tcfap2a|21418|transcription factor AP-2, alpha	NM_001122948|Tcfap2a|21418|transcription factor AP-2, alpha
mm9_v1_chr15_-_58765248_58765299	1.14758	UUGUUCG	BC061187|Tatdn1|69694|TatD DNase domain containing 1	AK042248|Tatdn1|69694|TatD DNase domain containing 1	NM_175151|Tatdn1|69694|TatD DNase domain containing 1	AK010232|Tatdn1|69694|TatD DNase domain containing 1	AK161972|Tatdn1|69694|TatD DNase domain containing 1
mm9_v1_chr3_-_141645214_141645214	1.13424	UUGUUCG	BC065143|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B	NM_007560|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B
mm9_v1_chr2_+_105516601_105516609	1.12949	UUGUUCG	NM_013627|Pax6|18508|paired box gene 6	BC011272|Pax6|18508|paired box gene 6
mm9_v1_chr18_+_42435006_42435038	1.12632	UUGUUCG	NM_172626|Rbm27|225432|RNA binding motif protein 27	AY461716|Rbm27|225432|RNA binding motif protein 27
mm9_v1_chr2_-_52532100_52532129	1.11018	UUGUUCG	AK147338|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	NM_001037099|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit
mm9_v1_chr8_+_125930981_125931146	1.10893	UUGUUCG	NM_008559|Mc1r|17199|melanocortin 1 receptor	AK148437|Mc1r|17199|melanocortin 1 receptor
mm9_v1_chr11_-_88725877_88725929	1.10294	UUGUUCG	AK076216|Akap1|11640|A kinase (PRKA) anchor protein 1	NM_001042541|Akap1|11640|A kinase (PRKA) anchor protein 1
mm9_v1_chr7_+_107855215_107855319	1.08924	UUGUUCG	BC079886|Fam168a|319604|family with sequence similarity 168, member A	NM_178764|Fam168a|319604|family with sequence similarity 168, member A	AK043356|Fam168a|319604|family with sequence similarity 168, member A	AK047153|Fam168a|319604|family with sequence similarity 168, member A	AK048559|Fam168a|319604|family with sequence similarity 168, member A	AK051453|Fam168a|319604|family with sequence similarity 168, member A	AK084931|Fam168a|319604|family with sequence similarity 168, member A	AK137424|Fam168a|319604|family with sequence similarity 168, member A
mm9_v1_chr13_+_25147872_25147872	1.08842	UUGUUCG	BC045136|Dcdc2a|195208|doublecortin domain containing 2a	NM_001195617|Dcdc2a|195208|doublecortin domain containing 2a	NM_177577|Dcdc2a|195208|doublecortin domain containing 2a
mm9_v1_chr16_+_31422377_31422406	1.08532	UUGUUCG	BC043683|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	NM_175177|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr15_+_40486577_40486623	1.07869	UUGUUCG	AK046521|Zfpm2|22762|zinc finger protein, multitype 2	NM_011766|Zfpm2|22762|zinc finger protein, multitype 2	AF125166|Zfpm2|22762|zinc finger protein, multitype 2
mm9_v1_chr2_+_163820920_163821078	1.07825	UUGUUCG	AK150414|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK151294|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK004872|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK011389|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	NM_018753|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AF058797|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK083367|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK158932|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK204033|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC132121|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC138512|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chrX_+_6356431_6356431	1.07372	UUGUUCG	BC075627|Dgkk|331374|diacylglycerol kinase kappa	NM_177914|Dgkk|331374|diacylglycerol kinase kappa
mm9_v1_chr13_-_64376186_64376295	1.05916	UUGUUCG	BC057357|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	BC049794|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	AK161345|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_172587|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chr1_+_153602492_153602592	1.05347	UUGUUCG	AB188342|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	NM_001039644|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	AK141326|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	AK143252|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC138658|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC138659|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC145357|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC145358|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3
mm9_v1_chr12_-_103995925_103996025	1.05243	UUGUUCG	BC055374|AK010878|100233175|cDNA sequence AK010878	BC014715|AK010878|100233175|cDNA sequence AK010878	AK018995|AK010878|100233175|cDNA sequence AK010878	AK011927|AK010878|100233175|cDNA sequence AK010878	AK006753|AK010878|100233175|cDNA sequence AK010878	AK010878|AK010878|100233175|cDNA sequence AK010878	NM_001142938|AK010878|100233175|cDNA sequence AK010878	NM_001142939|AK010878|100233175|cDNA sequence AK010878
mm9_v1_chrX_+_138662479_138662479	1.04083	UUGUUCG	NM_001161430|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chr2_-_52414072_52414117	1.00935	UUGUUCG	AK043850|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	AK079616|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	AK038633|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	NM_146123|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit
mm9_v1_chr11_-_88712812_88712825	0.992588	UUGUUCG	U95145|Akap1|11640|A kinase (PRKA) anchor protein 1	U95146|Akap1|11640|A kinase (PRKA) anchor protein 1	NM_009648|Akap1|11640|A kinase (PRKA) anchor protein 1	AK132749|Akap1|11640|A kinase (PRKA) anchor protein 1
mm9_v1_chr14_+_47621014_47621039	0.988026	UUGUUCG	AK006299|Samd4|74480|sterile alpha motif domain containing 4	NM_001163433|Samd4|74480|sterile alpha motif domain containing 4	AK161277|Samd4|74480|sterile alpha motif domain containing 4	AK018954|Samd4|74480|sterile alpha motif domain containing 4
mm9_v1_chr10_+_110735734_110735734	0.987672	UUGUUCG	AK004937|Bbs10|71769|Bardet-Biedl syndrome 10 (human)	NM_027914|Bbs10|71769|Bardet-Biedl syndrome 10 (human)
mm9_v1_chr1_-_182123596_182123618	0.987359	UUGUUCG	AJ278735|Adck3|67426|aarF domain containing kinase 3	NM_001163290|Adck3|67426|aarF domain containing kinase 3
mm9_v1_chr10_+_128185549_128185593	0.974707	UUGUUCG	BC049647|Wibg|78428|within bgcn homolog (Drosophila)	NM_001170869|Wibg|78428|within bgcn homolog (Drosophila)
mm9_v1_chr11_+_115281434_115281480	0.972141	UUGUUCG	NM_183285|Kctd2|70382|potassium channel tetramerisation domain containing 2	AK009318|Kctd2|70382|potassium channel tetramerisation domain containing 2	AK046534|Kctd2|70382|potassium channel tetramerisation domain containing 2	BC095988|Kctd2|70382|potassium channel tetramerisation domain containing 2
mm9_v1_chr7_-_144506112_144506127	0.968042	UUGUUCG	AK220542|Ebf3|13593|early B-cell factor 3	NM_001113414|Ebf3|13593|early B-cell factor 3	NM_001113415|Ebf3|13593|early B-cell factor 3	NM_010096|Ebf3|13593|early B-cell factor 3
mm9_v1_chr7_+_13466525_13466568	0.955976	UUGUUCG	AK132244|Zfp128|243833|zinc finger protein 128	AK035906|Zfp128|243833|zinc finger protein 128	NM_153802|Zfp128|243833|zinc finger protein 128	AK032046|Zfp128|243833|zinc finger protein 128	BC088998|Zfp128|243833|zinc finger protein 128	BC094248|Zfp128|243833|zinc finger protein 128	AF480861|Zfp128|243833|zinc finger protein 128
mm9_v1_chr5_+_43624701_43624701	0.950691	UUGUUCG	NM_001177379|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2	NM_175937|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2
mm9_v1_chr7_-_135020290_135020344	0.928642	UUGUUCG	BC028251|Zfp668|244219|zinc finger protein 668	AK047593|Zfp668|244219|zinc finger protein 668	AK081436|Zfp668|244219|zinc finger protein 668	AK053438|Zfp668|244219|zinc finger protein 668	NM_146259|Zfp668|244219|zinc finger protein 668	AK169556|Zfp668|244219|zinc finger protein 668
mm9_v1_chr2_-_77654669_77654872	0.925256	UUGUUCG	AK079322|Zfp385b|241494|zinc finger protein 385B	AK149352|Zfp385b|241494|zinc finger protein 385B	AK046798|Zfp385b|241494|zinc finger protein 385B	NM_178723|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr10_-_49508472_49508559	0.911256	UUGUUCG	D10054|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	AK141539|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	NM_001111268|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	NM_010349|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm9_v1_chr5_+_67651890_67652024	0.910615	UUGUUCG	AK012413|Tmem33|67878|transmembrane protein 33	NM_028975|Tmem33|67878|transmembrane protein 33	NM_030108|Tmem33|67878|transmembrane protein 33	AK032555|Tmem33|67878|transmembrane protein 33	AK005493|Tmem33|67878|transmembrane protein 33	AK007750|Tmem33|67878|transmembrane protein 33	AK017281|Tmem33|67878|transmembrane protein 33	AK153441|Tmem33|67878|transmembrane protein 33	AK007607|Tmem33|67878|transmembrane protein 33	BC005562|Tmem33|67878|transmembrane protein 33	AK165369|Tmem33|67878|transmembrane protein 33
mm9_v1_chrX_+_138662725_138662809	0.877734	UUGUUCG	NM_172782|Nxt2|237082|nuclear transport factor 2-like export factor 2	AK144349|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC064727|Nxt2|237082|nuclear transport factor 2-like export factor 2	AK032102|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC068166|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC118503|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC094570|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chr8_-_114400574_114400649	0.866441	UUGUUCG	AK018496|Tmem170|66817|transmembrane protein 170	NM_025781|Tmem170|66817|transmembrane protein 170	AK007926|Tmem170|66817|transmembrane protein 170	BC139377|Tmem170|66817|transmembrane protein 170	BC145964|Tmem170|66817|transmembrane protein 170
mm9_v1_chr9_-_79641213_79641236	0.858994	UUGUUCG	AK077065|Tmem30a|69981|transmembrane protein 30A	NM_133718|Tmem30a|69981|transmembrane protein 30A
mm9_v1_chr15_+_89330287_89330287	0.85848	UUGUUCG	AB231013|Shank3|58234|SH3/ankyrin domain gene 3	NM_021423|Shank3|58234|SH3/ankyrin domain gene 3
mm9_v1_chr13_-_48720941_48721032	0.835604	UUGUUCG	BC066081|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1	NM_207232|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1	AK132781|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1	AK038922|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1	AK030415|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1
mm9_v1_chr3_+_80840337_80840337	0.819608	UUGUUCG	AF266467|Pdgfc|54635|platelet-derived growth factor, C polypeptide	NM_019971|Pdgfc|54635|platelet-derived growth factor, C polypeptide
mm9_v1_chr2_-_77541328_77541435	0.80177	UUGUUCG	BC048543|Zfp385b|241494|zinc finger protein 385B	NM_001113399|Zfp385b|241494|zinc finger protein 385B	AK047859|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr15_-_90509751_90509818	0.7983	UUGUUCG	AK005311|Cpne8|66871|copine VIII	BC076564|Cpne8|66871|copine VIII	BC017626|Cpne8|66871|copine VIII	AK013407|Cpne8|66871|copine VIII	AK004559|Cpne8|66871|copine VIII	BC138745|Cpne8|66871|copine VIII	BC138746|Cpne8|66871|copine VIII	AK010227|Cpne8|66871|copine VIII	BC048551|Cpne8|66871|copine VIII	NM_001033851|Cpne8|66871|copine VIII	NM_025815|Cpne8|66871|copine VIII
mm9_v1_chr8_+_84239098_84239098	0.798042	UUGUUCG	BC064813|Inpp4b|234515|inositol polyphosphate-4-phosphatase, type II	NM_001024617|Inpp4b|234515|inositol polyphosphate-4-phosphatase, type II
mm9_v1_chr5_-_24606422_24606505	0.791383	UUGUUCG	AK154296|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	NM_145401|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm9_v1_chr17_-_82137708_82137731	0.781585	UUGUUCG	AF004666|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_001112798|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_011406|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	U70033|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	AK084813|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene	AK085810|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene
mm9_v1_chrX_+_98644445_98644450	0.775698	UUGUUCG	AK003906|Itgb1bp2|26549|integrin beta 1 binding protein 2	NM_013712|Itgb1bp2|26549|integrin beta 1 binding protein 2
mm9_v1_chr6_-_118147735_118147761	0.75698	UUGUUCG	BC059012|Ret|19713|ret proto-oncogene	NM_001080780|Ret|19713|ret proto-oncogene	NM_009050|Ret|19713|ret proto-oncogene
mm9_v1_chr18_+_69505374_69505487	0.751373	UUGUUCG	NM_001083967|Tcf4|21413|transcription factor 4	AK081012|Tcf4|21413|transcription factor 4	AK145285|Tcf4|21413|transcription factor 4	AK028748|Tcf4|21413|transcription factor 4	S75870|Tcf4|21413|transcription factor 4
mm9_v1_chr2_+_62502329_62502489	0.747366	UUGUUCG	AK046347|Gca|227960|grancalcin	AK050540|Gca|227960|grancalcin	AK033740|Gca|227960|grancalcin	AK040549|Gca|227960|grancalcin	AK049317|Gca|227960|grancalcin	AK078915|Gca|227960|grancalcin	NM_145523|Gca|227960|grancalcin	AF518325|Gca|227960|grancalcin	BC021450|Gca|227960|grancalcin	AB088388|Gca|227960|grancalcin
mm9_v1_chr2_-_38781939_38781980	0.743369	UUGUUCG	U14666|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	NM_010264|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	U09563|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1
mm9_v1_chr2_-_77357674_77357722	0.723504	UUGUUCG	AK078551|Zfp385b|241494|zinc finger protein 385B	AK050293|Zfp385b|241494|zinc finger protein 385B	NM_001113400|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr7_+_96552871_96552906	0.72229	UUGUUCG	BC015256|Fzd4|14366|frizzled homolog 4 (Drosophila)	NM_008055|Fzd4|14366|frizzled homolog 4 (Drosophila)	AK044794|Fzd4|14366|frizzled homolog 4 (Drosophila)	AK132577|Fzd4|14366|frizzled homolog 4 (Drosophila)	AK050891|Fzd4|14366|frizzled homolog 4 (Drosophila)
mm9_v1_chr1_-_138850206_138850206	0.717179	UUGUUCG	DQ133942|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	NM_001159769|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2
mm9_v1_chr10_-_112365976_112366087	0.715676	UUGUUCG	AK014824|Atxn7l3b|382423|ataxin 7-like 3B	BC058561|Atxn7l3b|382423|ataxin 7-like 3B	BC047210|Atxn7l3b|382423|ataxin 7-like 3B	BC079579|Atxn7l3b|382423|ataxin 7-like 3B	BC094390|Atxn7l3b|382423|ataxin 7-like 3B	BC030168|Atxn7l3b|382423|ataxin 7-like 3B	AK003631|Atxn7l3b|382423|ataxin 7-like 3B	AK150316|Atxn7l3b|382423|ataxin 7-like 3B	AK135540|Atxn7l3b|382423|ataxin 7-like 3B	AK011696|Atxn7l3b|382423|ataxin 7-like 3B	AK009409|Atxn7l3b|382423|ataxin 7-like 3B	NM_001033474|Atxn7l3b|382423|ataxin 7-like 3B
mm9_v1_chr11_+_77499638_77499656	0.715411	UUGUUCG	AK030113|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK160601|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	NM_001024205|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK170764|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK122494|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2
mm9_v1_chr13_-_104968472_104968556	0.711435	UUGUUCG	BC021756|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK084373|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK013956|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK167749|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK012141|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK010346|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK163342|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK149832|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	NM_001093759|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	NM_001093760|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	NM_025879|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene
mm9_v1_chr9_-_65756482_65756602	0.687171	UUGUUCG	AF539614|Trip4|56404|thyroid hormone receptor interactor 4	AK016170|Trip4|56404|thyroid hormone receptor interactor 4	AK139423|Trip4|56404|thyroid hormone receptor interactor 4	AK166192|Trip4|56404|thyroid hormone receptor interactor 4	NM_019797|Trip4|56404|thyroid hormone receptor interactor 4
mm9_v1_chr18_-_7626805_7626890	0.683626	UUGUUCG	AK033081|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	BC049662|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK012883|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK036956|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK035303|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK050710|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK162694|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK078849|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	NM_001081287|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	NM_001161620|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK027937|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
mm9_v1_chr7_+_6315986_6316086	0.682993	UUGUUCG	AK134974|Zfp78|330463|zinc finger protein 78	NM_001025163|Zfp78|330463|zinc finger protein 78	NM_001112805|Zfp78|330463|zinc finger protein 78	NM_177888|Zfp78|330463|zinc finger protein 78	AK163133|Zfp78|330463|zinc finger protein 78	BC085322|Zfp78|330463|zinc finger protein 78	AK039658|Zfp78|330463|zinc finger protein 78	AK173164|Zfp78|330463|zinc finger protein 78
mm9_v1_chr14_+_29831283_29831689	0.674465	UUGUUCG	NM_176920|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	AK044492|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	AK138618|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC099587|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC132594|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC145990|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1
mm9_v1_chr14_-_104867215_104867215	0.667972	UUGUUCG	AY706205|Pou4f1|18996|POU domain, class 4, transcription factor 1	NM_011143|Pou4f1|18996|POU domain, class 4, transcription factor 1
mm9_v1_chr9_-_114473486_114473486	0.665466	UUGUUCG	DQ005956|Trim71|636931|tripartite motif-containing 71	NM_001042503|Trim71|636931|tripartite motif-containing 71
mm9_v1_chr4_+_24825226_24825304	0.660135	UUGUUCG	NM_026742|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK160341|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK034728|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK019042|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	BC028764|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK003553|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4
mm9_v1_chr17_+_87506971_87507037	0.659884	UUGUUCG	BC053015|Socs5|56468|suppressor of cytokine signaling 5	NM_019654|Socs5|56468|suppressor of cytokine signaling 5	AK135099|Socs5|56468|suppressor of cytokine signaling 5
mm9_v1_chr10_+_93003376_93003390	0.655953	UUGUUCG	AK029803|Ccdc38|237465|coiled-coil domain containing 38	NM_175488|Ccdc38|237465|coiled-coil domain containing 38	AK030198|Ccdc38|237465|coiled-coil domain containing 38
mm9_v1_chr4_+_11685294_11685306	0.625727	UUGUUCG	AK155633|Cdh17|12557|cadherin 17	NM_019753|Cdh17|12557|cadherin 17
mm9_v1_chr9_-_44773594_44773682	0.622193	UUGUUCG	BC025043|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028721|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC006649|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC021406|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028850|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK172893|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	NM_145400|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)
mm9_v1_chr19_+_18787654_18787754	0.620768	UUGUUCG	AK145019|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	AK155389|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	AK083631|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	NM_177640|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	BC020125|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene
mm9_v1_chr18_+_69504145_69504185	0.618915	UUGUUCG	AK051958|Tcf4|21413|transcription factor 4	NM_013685|Tcf4|21413|transcription factor 4	U16322|Tcf4|21413|transcription factor 4
mm9_v1_chr5_-_86947601_86947624	0.61518	UUGUUCG	BC118660|9930032O22Rik|320454|RIKEN cDNA 9930032O22 gene	BC118611|9930032O22Rik|320454|RIKEN cDNA 9930032O22 gene	AK036981|9930032O22Rik|320454|RIKEN cDNA 9930032O22 gene	NM_177162|9930032O22Rik|320454|RIKEN cDNA 9930032O22 gene
mm9_v1_chr11_-_83112392_83112480	0.605216	UUGUUCG	AK153798|Pex12|103737|peroxisomal biogenesis factor 12	AK166413|Pex12|103737|peroxisomal biogenesis factor 12	AK041175|Pex12|103737|peroxisomal biogenesis factor 12	AK035552|Pex12|103737|peroxisomal biogenesis factor 12	NM_134025|Pex12|103737|peroxisomal biogenesis factor 12
mm9_v1_chr15_-_36937065_36937180	0.602933	UUGUUCG	AK132053|Zfp706|68036|zinc finger protein 706	AK167897|Zfp706|68036|zinc finger protein 706	AK168303|Zfp706|68036|zinc finger protein 706	BC054356|Zfp706|68036|zinc finger protein 706	AK167791|Zfp706|68036|zinc finger protein 706	BC052459|Zfp706|68036|zinc finger protein 706	NM_026521|Zfp706|68036|zinc finger protein 706
mm9_v1_chr18_+_23910833_23910892	0.599985	UUGUUCG	AK158570|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	NM_001162942|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK168834|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr7_-_140206929_140206929	0.592122	UUGUUCG	NM_001170744|Ctbp2|13017|C-terminal binding protein 2
mm9_v1_chr11_-_51570335_51570335	0.581822	UUGUUCG	NM_175255|Sec24a|77371|Sec24 related gene family, member A (S. cerevisiae)
mm9_v1_chr7_-_96487247_96487305	0.565757	UUGUUCG	AK013269|Tmem135|72759|transmembrane protein 135	AK028846|Tmem135|72759|transmembrane protein 135	AK047200|Tmem135|72759|transmembrane protein 135	BC033279|Tmem135|72759|transmembrane protein 135	NM_028343|Tmem135|72759|transmembrane protein 135
mm9_v1_chr13_-_40829082_40829191	0.561585	UUGUUCG	AB221578|Tcfap2a|21418|transcription factor AP-2, alpha	U17286|Tcfap2a|21418|transcription factor AP-2, alpha	AK145772|Tcfap2a|21418|transcription factor AP-2, alpha	X74216|Tcfap2a|21418|transcription factor AP-2, alpha	BC007471|Tcfap2a|21418|transcription factor AP-2, alpha	U17285|Tcfap2a|21418|transcription factor AP-2, alpha	NM_011547|Tcfap2a|21418|transcription factor AP-2, alpha
mm9_v1_chr2_-_94246839_94246867	0.549343	UUGUUCG	NM_183106|Ttc17|74569|tetratricopeptide repeat domain 17
mm9_v1_chr11_-_102046532_102046628	0.528725	UUGUUCG	AK081685|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK011126|Lsm12|268490|LSM12 homolog (S. cerevisiae)	BC027784|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK132889|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK075668|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK151118|Lsm12|268490|LSM12 homolog (S. cerevisiae)	NM_172947|Lsm12|268490|LSM12 homolog (S. cerevisiae)
mm9_v1_chr4_+_135242371_135242456	0.495928	UUGUUCG	AK141338|Il28ra|242700|interleukin 28 receptor alpha	NM_174851|Il28ra|242700|interleukin 28 receptor alpha	BC057856|Il28ra|242700|interleukin 28 receptor alpha	AY184376|Il28ra|242700|interleukin 28 receptor alpha
mm9_v1_chr7_+_52151432_52151509	0.490341	UUGUUCG	NM_027376|Fuz|70300|fuzzy homolog (Drosophila)	AK134650|Fuz|70300|fuzzy homolog (Drosophila)	AK168939|Fuz|70300|fuzzy homolog (Drosophila)	AK045745|Fuz|70300|fuzzy homolog (Drosophila)	AK033247|Fuz|70300|fuzzy homolog (Drosophila)	BC045601|Fuz|70300|fuzzy homolog (Drosophila)	AK011195|Fuz|70300|fuzzy homolog (Drosophila)
mm9_v1_chr5_+_15440508_15440728	0.484777	UUGUUCG	AK164580|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110843|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110844|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110845|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110846|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_009784|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	AK084101|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73483|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73484|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73485|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73486|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73487|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	BC115871|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	AK052898|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm9_v1_chr13_+_81022644_81022695	0.479248	UUGUUCG	AK088288|Arrdc3|105171|arrestin domain containing 3	AK084951|Arrdc3|105171|arrestin domain containing 3	BC054844|Arrdc3|105171|arrestin domain containing 3	NM_001042591|Arrdc3|105171|arrestin domain containing 3	BC044762|Arrdc3|105171|arrestin domain containing 3	BC098474|Arrdc3|105171|arrestin domain containing 3	AK122499|Arrdc3|105171|arrestin domain containing 3
mm9_v1_chr10_+_41170163_41170242	0.477414	UUGUUCG	AK146986|Zbtb24|268294|zinc finger and BTB domain containing 24	AK154467|Zbtb24|268294|zinc finger and BTB domain containing 24	AY210402|Zbtb24|268294|zinc finger and BTB domain containing 24	BC050933|Zbtb24|268294|zinc finger and BTB domain containing 24	NM_153398|Zbtb24|268294|zinc finger and BTB domain containing 24	AK054097|Zbtb24|268294|zinc finger and BTB domain containing 24	AK169260|Zbtb24|268294|zinc finger and BTB domain containing 24	BC055367|Zbtb24|268294|zinc finger and BTB domain containing 24	AF263010|Zbtb24|268294|zinc finger and BTB domain containing 24
mm9_v1_chr1_-_127808790_127808807	0.471385	UUGUUCG	AB041649|Lypd1|72585|Ly6/Plaur domain containing 1	AK045592|Lypd1|72585|Ly6/Plaur domain containing 1	NM_145100|Lypd1|72585|Ly6/Plaur domain containing 1
mm9_v1_chr2_-_152223710_152223930	0.460301	UUGUUCG	BC067019|Sox12|20667|SRY-box containing gene 12	NM_011438|Sox12|20667|SRY-box containing gene 12
mm9_v1_chr8_+_125778094_125778211	0.459794	UUGUUCG	AK133363|Zfp276|57247|zinc finger protein (C2H2 type) 276	NM_020497|Zfp276|57247|zinc finger protein (C2H2 type) 276	AK028939|Zfp276|57247|zinc finger protein (C2H2 type) 276	AK043258|Zfp276|57247|zinc finger protein (C2H2 type) 276	BC066056|Zfp276|57247|zinc finger protein (C2H2 type) 276
mm9_v1_chr4_-_84320976_84320992	0.457984	UUGUUCG	AK030323|Bnc2|242509|basonuclin 2	NM_172870|Bnc2|242509|basonuclin 2
mm9_v1_chr3_+_55046447_55046542	0.457332	UUGUUCG	AK147831|Dclk1|13175|doublecortin-like kinase 1	NM_001111053|Dclk1|13175|doublecortin-like kinase 1	NM_001195538|Dclk1|13175|doublecortin-like kinase 1	NM_019978|Dclk1|13175|doublecortin-like kinase 1	AB093234|Dclk1|13175|doublecortin-like kinase 1	AK164993|Dclk1|13175|doublecortin-like kinase 1	AF155820|Dclk1|13175|doublecortin-like kinase 1	BC064783|Dclk1|13175|doublecortin-like kinase 1	BC021354|Dclk1|13175|doublecortin-like kinase 1	AK043874|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr5_-_66543123_66543228	0.455423	UUGUUCG	AK170082|Rbm47|245945|RNA binding motif protein 47	NM_001127382|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr8_+_73221637_73221637	0.440575	UUGUUCG	NM_010592|Jund|16478|Jun proto-oncogene related gene d
mm9_v1_chr11_-_30098163_30098286	0.43315	UUGUUCG	AF017112|Spnb2|20742|spectrin beta 2	AF016040|Spnb2|20742|spectrin beta 2	AK079842|Spnb2|20742|spectrin beta 2	AK157727|Spnb2|20742|spectrin beta 2	AK169544|Spnb2|20742|spectrin beta 2	NM_009260|Spnb2|20742|spectrin beta 2
mm9_v1_chr13_+_113450958_113450993	0.432743	UUGUUCG	AK020109|Slc38a9|268706|solute carrier family 38, member 9	BC052361|Slc38a9|268706|solute carrier family 38, member 9	NM_178746|Slc38a9|268706|solute carrier family 38, member 9	AK044735|Slc38a9|268706|solute carrier family 38, member 9	AK043402|Slc38a9|268706|solute carrier family 38, member 9	AK034958|Slc38a9|268706|solute carrier family 38, member 9	AK039821|Slc38a9|268706|solute carrier family 38, member 9
mm9_v1_chr6_-_119798116_119798193	0.427326	UUGUUCG	AK053824|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	AK035989|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	AK048990|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	AF340028|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	AF340029|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	NM_053204|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	NM_178085|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1
mm9_v1_chr15_+_102797295_102797295	0.423053	UUGUUCG	AK033186|Hoxc10|209448|homeobox C10	NM_010462|Hoxc10|209448|homeobox C10
mm9_v1_chr5_-_76733540_76733585	0.408223	UUGUUCG	AF000998|Clock|12753|circadian locomotor output cycles kaput	NM_007715|Clock|12753|circadian locomotor output cycles kaput
mm9_v1_chr4_-_131700278_131700485	0.404284	UUGUUCG	S66181|Oprd1|18386|opioid receptor, delta 1	L11064|Oprd1|18386|opioid receptor, delta 1	S65335|Oprd1|18386|opioid receptor, delta 1	BC137958|Oprd1|18386|opioid receptor, delta 1	BC137969|Oprd1|18386|opioid receptor, delta 1	L07271|Oprd1|18386|opioid receptor, delta 1	L06322|Oprd1|18386|opioid receptor, delta 1	AK043873|Oprd1|18386|opioid receptor, delta 1	NM_013622|Oprd1|18386|opioid receptor, delta 1
mm9_v1_chrX_-_153853209_153853243	0.396067	UUGUUCG	U49908|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	NM_011077|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	U73910|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	AK158481|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)
mm9_v1_chr3_-_142054771_142054814	0.394812	UUGUUCG	DQ177283|Pdlim5|56376|PDZ and LIM domain 5	HM369794|Pdlim5|56376|PDZ and LIM domain 5	HM369795|Pdlim5|56376|PDZ and LIM domain 5	HM369796|Pdlim5|56376|PDZ and LIM domain 5	HM369797|Pdlim5|56376|PDZ and LIM domain 5	HM369798|Pdlim5|56376|PDZ and LIM domain 5	NM_001190857|Pdlim5|56376|PDZ and LIM domain 5	NM_022554|Pdlim5|56376|PDZ and LIM domain 5	AB016587|Pdlim5|56376|PDZ and LIM domain 5
mm9_v1_chr16_-_11909420_11909546	0.386102	UUGUUCG	BC025476|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK029379|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK032288|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK041329|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	BC034347|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK133977|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK080876|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK049721|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK134718|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	NM_146067|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK029442|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1
mm9_v1_chr17_-_10512217_10512250	0.376181	UUGUUCG	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr18_+_35721811_35721848	0.36832	UUGUUCG	NM_010771|Matr3|17184|matrin 3
mm9_v1_chr2_+_74549973_74550049	0.367058	UUGUUCG	AK138525|Hoxd3|15434|homeobox D3	AK164120|1700109F18Rik|73429|RIKEN cDNA 1700109F18 gene	NM_010468|Hoxd3|15434|homeobox D3
mm9_v1_chrX_+_160346948_160347157	0.360929	UUGUUCG	AK045558|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK047724|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK167690|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK053941|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK005223|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	BC046964|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	NM_026887|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK043776|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit
mm9_v1_chr6_+_17256369_17256377	0.347357	UUGUUCG	AB029929|Cav1|12389|caveolin 1, caveolae protein	NM_007616|Cav1|12389|caveolin 1, caveolae protein
mm9_v1_chr6_-_90760116_90760132	0.339212	UUGUUCG	NM_001134384|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr11_-_5442157_5442220	0.338667	UUGUUCG	BC034558|Ccdc117|104479|coiled-coil domain containing 117	BC059888|Ccdc117|104479|coiled-coil domain containing 117	BC018601|Ccdc117|104479|coiled-coil domain containing 117	NM_134033|Ccdc117|104479|coiled-coil domain containing 117
mm9_v1_chr19_+_40969176_40969231	0.332761	UUGUUCG	AK087532|E130314M14Rik|449522|RIKEN cDNA E130314M14 gene	AK041506|Zfp518a|72672|zinc finger protein 518A	NM_028319|Zfp518a|72672|zinc finger protein 518A
mm9_v1_chr11_+_100181296_100181331	0.331947	UUGUUCG	AK150813|Eif1|20918|eukaryotic translation initiation factor 1	AK151575|Eif1|20918|eukaryotic translation initiation factor 1	AK152194|Eif1|20918|eukaryotic translation initiation factor 1	AK169763|Eif1|20918|eukaryotic translation initiation factor 1	AK148032|Eif1|20918|eukaryotic translation initiation factor 1	AK151070|Eif1|20918|eukaryotic translation initiation factor 1	BC003463|Eif1|20918|eukaryotic translation initiation factor 1	NM_011508|Eif1|20918|eukaryotic translation initiation factor 1	BC081429|Eif1|20918|eukaryotic translation initiation factor 1	AF129888|Eif1|20918|eukaryotic translation initiation factor 1	BC010791|Eif1|20918|eukaryotic translation initiation factor 1	BC096691|Eif1|20918|eukaryotic translation initiation factor 1	BC096656|Eif1|20918|eukaryotic translation initiation factor 1
mm9_v1_chr12_+_85750017_85750095	0.318735	UUGUUCG	AK013494|2900006K08Rik|72873|RIKEN cDNA 2900006K08 gene	NM_028377|2900006K08Rik|72873|RIKEN cDNA 2900006K08 gene	AK133381|2900006K08Rik|72873|RIKEN cDNA 2900006K08 gene	BC151099|2900006K08Rik|72873|RIKEN cDNA 2900006K08 gene	BC151103|2900006K08Rik|72873|RIKEN cDNA 2900006K08 gene
mm9_v1_chr13_-_30077931_30077931	0.318386	UUGUUCG	AK133828|E2f3|13557|E2F transcription factor 3	NM_010093|E2f3|13557|E2F transcription factor 3
mm9_v1_chr5_+_130230890_130230961	0.313392	UUGUUCG	NM_008095|Gbas|14467|glioblastoma amplified sequence
mm9_v1_chr4_-_45543623_45543714	0.308814	UUGUUCG	NM_001033306|Shb|230126|src homology 2 domain-containing transforming protein B
mm9_v1_chrX_-_100049954_100049954	0.308265	UUGUUCG	AK016891|Dmrtc1c|71083|DMRT-like family C1c	NM_001142690|Dmrtc1c2|668357|DMRT-like family C1c2	NM_001142691|Dmrtc1c|71083|DMRT-like family C1c
mm9_v1_chr6_+_52263491_52263491	0.292994	UUGUUCG	NM_007966|Evx1|14028|even skipped homeotic gene 1 homolog	X54239|Evx1|14028|even skipped homeotic gene 1 homolog
mm9_v1_chr5_-_139821054_139821222	0.290703	UUGUUCG	AK148526|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK007984|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	BC031792|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	NM_197980|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK002486|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK013260|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK003697|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK013289|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)
mm9_v1_chr9_+_64808638_64808765	0.27967	UUGUUCG	NM_001077631|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK169772|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK035654|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK041578|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK086850|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	BC024913|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK032095|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	NM_175153|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK050654|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene
mm9_v1_chr8_+_85689250_85689250	0.275935	UUGUUCG	AK049049|Tbc1d9|71310|TBC1 domain family, member 9	NM_001111304|Tbc1d9|71310|TBC1 domain family, member 9	NM_027758|Tbc1d9|71310|TBC1 domain family, member 9
mm9_v1_chr13_+_94541584_94541713	0.263475	UUGUUCG	AK140163|Arsb|11881|arylsulfatase B	AK158312|Arsb|11881|arylsulfatase B	NM_009712|Arsb|11881|arylsulfatase B	AK083309|Arsb|11881|arylsulfatase B	BC150661|Arsb|11881|arylsulfatase B	AK154098|Arsb|11881|arylsulfatase B
mm9_v1_chr15_-_50721552_50721725	0.262591	UUGUUCG	BC099962|Trps1|83925|trichorhinophalangeal syndrome I (human)	AF346836|Trps1|83925|trichorhinophalangeal syndrome I (human)	NM_032000|Trps1|83925|trichorhinophalangeal syndrome I (human)
mm9_v1_chrX_+_99998301_99998301	0.23809	UUGUUCG	AK016891|Dmrtc1c|71083|DMRT-like family C1c	NM_001142690|Dmrtc1c2|668357|DMRT-like family C1c2	NM_001142691|Dmrtc1c|71083|DMRT-like family C1c
mm9_v1_chr11_-_94937951_94938027	0.227861	UUGUUCG	BC053031|Itga3|16400|integrin alpha 3	NM_013565|Itga3|16400|integrin alpha 3
mm9_v1_chrX_-_131076136_131076235	0.225464	UUGUUCG	BC004796|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AF150081|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK088903|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK165573|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AB031055|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	BC094631|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	NM_013898|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK011402|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK090079|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)
mm9_v1_chr4_+_148178500_148178594	0.218381	UUGUUCG	BC075673|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_001159344|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_027195|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK048565|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK144492|Casz1|69743|castor homolog 1, zinc finger (Drosophila)
mm9_v1_chr11_+_105451296_105451348	0.208015	UUGUUCG	AK019982|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	NM_181071|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	AK051973|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm9_v1_chr1_-_156573049_156573160	0.202521	UUGUUCG	NM_009782|Cacna1e|12290|calcium channel, voltage-dependent, R type, alpha 1E subunit	BC150750|Cacna1e|12290|calcium channel, voltage-dependent, R type, alpha 1E subunit
mm9_v1_chr10_+_127114119_127114144	0.189838	UUGUUCG	BC030440|Tmem194|210035|transmembrane protein 194	NM_001113211|Tmem194|210035|transmembrane protein 194	NM_173732|Tmem194|210035|transmembrane protein 194	AK129110|Tmem194|210035|transmembrane protein 194	AK090031|Tmem194|210035|transmembrane protein 194
mm9_v1_chr13_-_41205322_41205386	0.188434	UUGUUCG	AF081556|Gcm2|107889|glial cells missing homolog 2 (Drosophila)	NM_008104|Gcm2|107889|glial cells missing homolog 2 (Drosophila)	BC110631|Gcm2|107889|glial cells missing homolog 2 (Drosophila)	BC110632|Gcm2|107889|glial cells missing homolog 2 (Drosophila)
mm9_v1_chr9_-_95307645_95307747	0.183551	UUGUUCG	NM_018763|Chst2|54371|carbohydrate sulfotransferase 2
mm9_v1_chr11_-_65083442_65083498	0.175863	UUGUUCG	AF384055|Myocd|214384|myocardin	AY303755|Myocd|214384|myocardin	NM_145136|Myocd|214384|myocardin	NM_146386|Myocd|214384|myocardin	AK142216|Myocd|214384|myocardin
mm9_v1_chr17_+_86020173_86020181	0.174167	UUGUUCG	NM_011381|Six3|20473|sine oculis-related homeobox 3 homolog (Drosophila)
mm9_v1_chr10_-_126971614_126971641	0.16803	UUGUUCG	AK004130|Nxph4|104080|neurexophilin 4	NM_183297|Nxph4|104080|neurexophilin 4
mm9_v1_chr3_+_9250566_9250566	0.163344	UUGUUCG	NM_177660|Zbtb10|229055|zinc finger and BTB domain containing 10
mm9_v1_chr1_+_127573551_127573586	0.155513	UUGUUCG	BC085285|Gpr39|71111|G protein-coupled receptor 39	NM_027677|Gpr39|71111|G protein-coupled receptor 39
mm9_v1_chr19_+_3323262_3323319	0.134591	UUGUUCG	NM_013495|Cpt1a|12894|carnitine palmitoyltransferase 1a, liver	BC054791|Cpt1a|12894|carnitine palmitoyltransferase 1a, liver
mm9_v1_chr5_-_66542161_66542216	0.132481	UUGUUCG	AK035620|Rbm47|245945|RNA binding motif protein 47	AK142584|Rbm47|245945|RNA binding motif protein 47	AK085733|Rbm47|245945|RNA binding motif protein 47	NM_178446|Rbm47|245945|RNA binding motif protein 47	BC112902|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr11_-_58996318_58996331	0.122469	UUGUUCG	AK046421|Gjc2|118454|gap junction protein, gamma 2	NM_175452|Gjc2|118454|gap junction protein, gamma 2
mm9_v1_chr14_-_21365595_21365800	0.120562	UUGUUCG	BC037668|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	AK135203|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	M81483|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	AB221678|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	BC066000|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	NM_008914|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform
mm9_v1_chr15_-_76490490_76490546	0.119462	UUGUUCG	AJ251516|Cyhr1|54151|cysteine and histidine rich 1	NM_019396|Cyhr1|54151|cysteine and histidine rich 1	BC016196|Cyhr1|54151|cysteine and histidine rich 1	BC025112|Cyhr1|54151|cysteine and histidine rich 1	NM_180962|Cyhr1|54151|cysteine and histidine rich 1	AK004009|Cyhr1|54151|cysteine and histidine rich 1
mm9_v1_chrX_-_159987479_159987608	0.112417	UUGUUCG	BC113145|Grpr|14829|gastrin releasing peptide receptor	M61000|Grpr|14829|gastrin releasing peptide receptor	NM_008177|Grpr|14829|gastrin releasing peptide receptor	AK033473|Grpr|14829|gastrin releasing peptide receptor	M57922|Grpr|14829|gastrin releasing peptide receptor
mm9_v1_chr3_-_9610062_9610137	0.11	UUGUUCG	AF292939|Zfp704|170753|zinc finger protein 704	NM_133218|Zfp704|170753|zinc finger protein 704
mm9_v1_chr11_-_58996703_58996716	0.103289	UUGUUCG	AK046609|Gjc2|118454|gap junction protein, gamma 2	AY394498|Gjc2|118454|gap junction protein, gamma 2	NM_080454|Gjc2|118454|gap junction protein, gamma 2
mm9_v1_chr1_-_162281701_162281701	0.0989872	UUGUUCG	AK147634|Rabgap1l|29809|RAB GTPase activating protein 1-like	NM_001038621|Rabgap1l|29809|RAB GTPase activating protein 1-like
mm9_v1_chr1_-_191511950_191512003	0.0843551	UUGUUCG	AK080758|Cenpf|108000|centromere protein F	AK029517|Cenpf|108000|centromere protein F	AK165236|Cenpf|108000|centromere protein F	NM_001081363|Cenpf|108000|centromere protein F
mm9_v1_chr2_+_152052575_152052697	0.0806785	UUGUUCG	NM_007788|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	AK031617|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	AK146032|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	BC060742|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	U51866|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	AK158077|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	BC069919|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	AK011501|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	BC026149|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	BC089343|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide
mm9_v1_chr12_-_16596573_16596578	0.0798001	UUGUUCG	AK030921|Lpin1|14245|lipin 1	NM_001130412|Lpin1|14245|lipin 1	NM_015763|Lpin1|14245|lipin 1	NM_172950|Lpin1|14245|lipin 1
mm9_v1_chr2_+_119500777_119500991	0.0772294	UUGUUCG	NM_030112|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC048535|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC022717|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC038032|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117848|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117849|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK177377|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr11_+_69139759_69139835	0.0687268	UUGUUCG	AK049316|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	AK083134|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	NM_010599|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	AK046194|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	AK031806|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	AK044102|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	BC017518|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3
mm9_v1_chr13_+_107737175_107737270	0.060394	UUGUUCG	NM_025447|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK078401|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	BC019799|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK146188|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK011544|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK007759|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK015145|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK078186|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK161333|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)
mm9_v1_chrX_-_9240025_9240132	0.0504295	UUGUUCG	BC030032|Dynlt3|67117|dynein light chain Tctex-type 3	AK010186|Dynlt3|67117|dynein light chain Tctex-type 3	AK018842|Dynlt3|67117|dynein light chain Tctex-type 3	AK088277|Dynlt3|67117|dynein light chain Tctex-type 3	NM_025975|Dynlt3|67117|dynein light chain Tctex-type 3
mm9_v1_chr1_-_74590801_74590859	0.036552	UUGUUCG	BC139091|Usp37|319651|ubiquitin specific peptidase 37	AK133317|Usp37|319651|ubiquitin specific peptidase 37	AK030013|Usp37|319651|ubiquitin specific peptidase 37	NM_176972|Usp37|319651|ubiquitin specific peptidase 37
mm9_v1_chr15_+_12251250_12251389	0.0362852	UUGUUCG	AB271918|Golph3|66629|golgi phosphoprotein 3	BC051035|Golph3|66629|golgi phosphoprotein 3	NM_025673|Golph3|66629|golgi phosphoprotein 3	BC039909|Golph3|66629|golgi phosphoprotein 3	BC031445|Golph3|66629|golgi phosphoprotein 3
mm9_v1_chr4_+_115457560_115457648	0.0359257	UUGUUCG	BC044874|Atpaf1|230649|ATP synthase mitochondrial F1 complex assembly factor 1	NM_181040|Atpaf1|230649|ATP synthase mitochondrial F1 complex assembly factor 1
mm9_v1_chr11_+_80290509_80290569	0.0329337	UUGUUCG	AK142868|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK086621|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK141549|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK169667|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK079557|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC050768|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	NM_009871|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK039999|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC058697|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC046823|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK048617|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm9_v1_chrX_+_103222548_103222685	0.030995	UUGUUCG	AK017506|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK033254|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	NM_001109757|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	NM_009726|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK155643|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK171563|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK172209|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	U03434|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	U71091|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	BC141395|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide
mm9_v1_chr7_-_128125714_128125825	0.0137244	UUGUUCG	BC117530|Cdr2|12585|cerebellar degeneration-related 2	BC118511|Cdr2|12585|cerebellar degeneration-related 2	AK171706|Cdr2|12585|cerebellar degeneration-related 2	U88588|Cdr2|12585|cerebellar degeneration-related 2	AK157902|Cdr2|12585|cerebellar degeneration-related 2	AK148057|Cdr2|12585|cerebellar degeneration-related 2	NM_007672|Cdr2|12585|cerebellar degeneration-related 2
mm9_v1_chr8_+_127044656_127044747	0.0093877	UUGUUCG	NM_029746|Cog2|76332|component of oligomeric golgi complex 2	AK089920|Cog2|76332|component of oligomeric golgi complex 2	AK169298|Cog2|76332|component of oligomeric golgi complex 2	AK157348|Cog2|76332|component of oligomeric golgi complex 2	BC011435|Cog2|76332|component of oligomeric golgi complex 2	AK012236|Cog2|76332|component of oligomeric golgi complex 2
mm9_v1_chr18_-_46372017_46372260	0.00649904	UUGUUCG	AY251389|Trim36|28105|tripartite motif-containing 36	AB103063|Trim36|28105|tripartite motif-containing 36	BC058106|Trim36|28105|tripartite motif-containing 36	NM_178872|Trim36|28105|tripartite motif-containing 36
mm9_v1_chr11_-_8564514_8564596	0.00136143	UUGUUCG	AK052680|Tns3|319939|tensin 3	AK089717|Tns3|319939|tensin 3	NM_001083587|Tns3|319939|tensin 3
