mm9_v1_chr5_-_9725274_9725369	21.4782	UUUUUGC	NM_181850|Grm3|108069|glutamate receptor, metabotropic 3
mm9_v1_chrX_-_49034778_49034778	19.9841	UUUUUGC	NM_001077202|Hs6st2|50786|heparan sulfate 6-O-sulfotransferase 2
mm9_v1_chr16_+_5884885_5884885	19.7881	UUUUUGC	BC053009|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	NM_021477|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chrX_-_49033640_49033666	19.2932	UUUUUGC	AK083281|Hs6st2|50786|heparan sulfate 6-O-sulfotransferase 2	BC063327|Hs6st2|50786|heparan sulfate 6-O-sulfotransferase 2	AK171680|Hs6st2|50786|heparan sulfate 6-O-sulfotransferase 2	NM_015819|Hs6st2|50786|heparan sulfate 6-O-sulfotransferase 2
mm9_v1_chr16_+_7069927_7069947	17.8019	UUUUUGC	AF191501|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	NM_183188|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr18_-_25912453_25912483	17.1131	UUUUUGC	AK161918|Celf4|108013|CUGBP, Elav-like family member 4	BC048405|Celf4|108013|CUGBP, Elav-like family member 4	BC052744|Celf4|108013|CUGBP, Elav-like family member 4	NM_001146292|Celf4|108013|CUGBP, Elav-like family member 4	NM_001146293|Celf4|108013|CUGBP, Elav-like family member 4	NM_001146294|Celf4|108013|CUGBP, Elav-like family member 4	NM_001146295|Celf4|108013|CUGBP, Elav-like family member 4	NM_001174074|Celf4|108013|CUGBP, Elav-like family member 4	NM_133195|Celf4|108013|CUGBP, Elav-like family member 4
mm9_v1_chr15_+_91958558_91958558	16.9456	UUUUUGC	NM_007727|Cntn1|12805|contactin 1
mm9_v1_chr15_+_91881593_91881615	16.711	UUUUUGC	AK138969|Cntn1|12805|contactin 1	NM_001159648|Cntn1|12805|contactin 1
mm9_v1_chr5_-_145522423_145522496	14.246	UUUUUGC	BC127616|Tmem130|243339|transmembrane protein 130	BC127617|Tmem130|243339|transmembrane protein 130	BC067004|Tmem130|243339|transmembrane protein 130	NM_177735|Tmem130|243339|transmembrane protein 130
mm9_v1_chr15_+_91991704_91991862	13.7737	UUUUUGC	NM_001159647|Cntn1|12805|contactin 1	BC066864|Cntn1|12805|contactin 1
mm9_v1_chr16_-_91011339_91011552	13.6611	UUUUUGC	NM_001045515|Synj1|104015|synaptojanin 1	NM_001164483|Synj1|104015|synaptojanin 1
mm9_v1_chr2_-_52532100_52532129	13.595	UUUUUGC	AK147338|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	NM_001037099|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit
mm9_v1_chr11_-_41996141_41996431	13.5924	UUUUUGC	AK141596|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	AK034095|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	NM_010250|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm9_v1_chr2_-_148558110_148558202	13.5121	UUUUUGC	AK078224|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	BC038362|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	AK083184|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	NM_019632|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	BC049874|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta
mm9_v1_chr2_-_52414072_52414117	13.2095	UUUUUGC	AK043850|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	AK079616|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	AK038633|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	NM_146123|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit
mm9_v1_chr10_+_75716580_75716636	13.1769	UUUUUGC	NM_009115|S100b|20203|S100 protein, beta polypeptide, neural	BC061178|S100b|20203|S100 protein, beta polypeptide, neural	AK135083|S100b|20203|S100 protein, beta polypeptide, neural	AK161945|S100b|20203|S100 protein, beta polypeptide, neural
mm9_v1_chr1_+_66515003_66515020	12.8965	UUUUUGC	AK043914|Unc80|329178|unc-80 homolog (C. elegans)	FJ210934|Unc80|329178|unc-80 homolog (C. elegans)	NM_175510|Unc80|329178|unc-80 homolog (C. elegans)
mm9_v1_chr16_+_38089086_38089192	12.5782	UUUUUGC	AB066114|Gsk3b|56637|glycogen synthase kinase 3 beta	NM_019827|Gsk3b|56637|glycogen synthase kinase 3 beta	BC060743|Gsk3b|56637|glycogen synthase kinase 3 beta
mm9_v1_chr7_+_4071087_4071169	10.6221	UUUUUGC	AK043998|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_001001454|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_001109765|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_021324|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK031550|Ttyh1|57776|tweety homolog 1 (Drosophila)
mm9_v1_chr6_+_7505070_7505199	10.5967	UUUUUGC	D17584|Tac1|21333|tachykinin 1	NM_009311|Tac1|21333|tachykinin 1	BC117081|Tac1|21333|tachykinin 1	BC119122|Tac1|21333|tachykinin 1	BC144737|Tac1|21333|tachykinin 1
mm9_v1_chr14_-_80171003_80171120	10.4906	UUUUUGC	AK140407|Pcdh8|18530|protocadherin 8	AF231125|Pcdh8|18530|protocadherin 8	BC052388|Pcdh8|18530|protocadherin 8	BC053008|Pcdh8|18530|protocadherin 8	AK048638|Pcdh8|18530|protocadherin 8	AK049982|Pcdh8|18530|protocadherin 8	NM_001042726|Pcdh8|18530|protocadherin 8	NM_021543|Pcdh8|18530|protocadherin 8
mm9_v1_chr3_-_80606704_80606756	9.93603	UUUUUGC	AK163941|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK046861|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_001039195|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_001083806|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_013540|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK014389|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm9_v1_chr6_+_21166108_21166108	9.74371	UUUUUGC	BC079667|Kcnd2|16508|potassium voltage-gated channel, Shal-related family, member 2	NM_019697|Kcnd2|16508|potassium voltage-gated channel, Shal-related family, member 2
mm9_v1_chr8_-_9771020_9771022	9.73174	UUUUUGC	BC117535|Fam155a|270028|family with sequence similarity 155, member A	AK032202|Fam155a|270028|family with sequence similarity 155, member A	NM_173446|Fam155a|270028|family with sequence similarity 155, member A
mm9_v1_chr4_-_151235861_151235879	9.34288	UUUUUGC	AK158710|Camta1|100072|calmodulin binding transcription activator 1	NM_001081557|Camta1|100072|calmodulin binding transcription activator 1	NM_001195565|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr18_-_35374663_35374683	9.2231	UUUUUGC	AK122278|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK036155|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK044705|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK046774|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	NM_178005|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2
mm9_v1_chr2_-_7002344_7002370	9.11512	UUUUUGC	NM_001110229|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110230|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160292|Celf2|14007|CUGBP, Elav-like family member 2	AK159996|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr1_-_23389950_23390192	8.85158	UUUUUGC	NM_001081079|Ogfrl1|70155|opioid growth factor receptor-like 1
mm9_v1_chr4_-_75779379_75779379	8.47502	UUUUUGC	AF326559|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	AF326560|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	NM_001014288|Ptprd|19266|protein tyrosine phosphatase, receptor type, D
mm9_v1_chr2_+_158492468_158492468	8.27175	UUUUUGC	NM_153089|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm9_v1_chr13_-_14615371_14615494	7.90013	UUUUUGC	AK051569|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK084246|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK086170|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK047678|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	NM_001081348|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK053694|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
mm9_v1_chr3_-_117063793_117063793	7.83903	UUUUUGC	AF541279|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AK046782|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AY266266|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AY266267|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	NM_177664|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm9_v1_chr13_+_58907953_58907974	7.82508	UUUUUGC	NM_008745|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr10_+_89336253_89336253	7.55906	UUUUUGC	NM_001128086|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr10_+_106708886_106708980	7.38677	UUUUUGC	NM_001033223|Lin7a|108030|lin-7 homolog A (C. elegans)	NM_001039354|Lin7a|108030|lin-7 homolog A (C. elegans)	BC105965|Lin7a|108030|lin-7 homolog A (C. elegans)	AK160671|Lin7a|108030|lin-7 homolog A (C. elegans)	BC029721|Lin7a|108030|lin-7 homolog A (C. elegans)
mm9_v1_chr12_+_86814822_86814862	7.33631	UUUUUGC	AK154418|Fos|14281|FBJ osteosarcoma oncogene	BC029814|Fos|14281|FBJ osteosarcoma oncogene	NM_010234|Fos|14281|FBJ osteosarcoma oncogene
mm9_v1_chr4_-_76240202_76240202	7.26702	UUUUUGC	BC086654|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	NM_011211|Ptprd|19266|protein tyrosine phosphatase, receptor type, D
mm9_v1_chr2_-_104250490_104250490	7.05069	UUUUUGC	NM_001033347|D430041D05Rik|241589|RIKEN cDNA D430041D05 gene
mm9_v1_chr7_-_89079335_89079355	6.96754	UUUUUGC	AK045542|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	NM_013886|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3
mm9_v1_chr2_-_66278870_66278908	6.85302	UUUUUGC	AK046001|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	AK134744|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	NM_018733|Scn1a|20265|sodium channel, voltage-gated, type I, alpha
mm9_v1_chr5_+_151476361_151476427	6.8383	UUUUUGC	AY102267|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)	NM_175310|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
mm9_v1_chr7_-_38554642_38554770	6.76004	UUUUUGC	AK122270|Zfp536|243937|zinc finger protein 536	AK030633|Zfp536|243937|zinc finger protein 536	NM_172385|Zfp536|243937|zinc finger protein 536
mm9_v1_chr4_+_108551674_108551769	6.75964	UUUUUGC	AK082959|Rab3b|69908|RAB3B, member RAS oncogene family	NM_023537|Rab3b|69908|RAB3B, member RAS oncogene family	AK012165|Rab3b|69908|RAB3B, member RAS oncogene family	BC051918|Rab3b|69908|RAB3B, member RAS oncogene family
mm9_v1_chr14_+_84843366_84843370	6.56354	UUUUUGC	AK142358|Pcdh17|219228|protocadherin 17	AK147265|Pcdh17|219228|protocadherin 17	NM_001013753|Pcdh17|219228|protocadherin 17
mm9_v1_chr5_+_22252006_22252042	6.53161	UUUUUGC	NM_001081231|Lhfpl3|269629|lipoma HMGIC fusion partner-like 3	NM_029990|Lhfpl3|269629|lipoma HMGIC fusion partner-like 3	AK033906|Lhfpl3|269629|lipoma HMGIC fusion partner-like 3	AK020916|Lhfpl3|269629|lipoma HMGIC fusion partner-like 3
mm9_v1_chr2_-_7317513_7317626	6.5149	UUUUUGC	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr6_+_96063137_96063148	6.37584	UUUUUGC	AK050001|Fam19a1|320265|family with sequence similarity 19, member A1	NM_182808|Fam19a1|320265|family with sequence similarity 19, member A1
mm9_v1_chr4_+_137806293_137806394	6.36023	UUUUUGC	DQ832275|Sh2d5|230863|SH2 domain containing 5	NM_001099631|Sh2d5|230863|SH2 domain containing 5	BC036961|Sh2d5|230863|SH2 domain containing 5	AK032598|Sh2d5|230863|SH2 domain containing 5
mm9_v1_chr2_+_164313584_164313634	6.34347	UUUUUGC	NM_001048229|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr3_-_59066744_59066767	6.22326	UUUUUGC	BC025428|P2ry12|70839|purinergic receptor P2Y, G-protein coupled 12	AK013804|P2ry12|70839|purinergic receptor P2Y, G-protein coupled 12	NM_027571|P2ry12|70839|purinergic receptor P2Y, G-protein coupled 12
mm9_v1_chr2_+_164312376_164312376	6.145	UUUUUGC	AK003735|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2	NM_001048228|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr18_-_16967557_16967557	6.10888	UUUUUGC	NM_007664|Cdh2|12558|cadherin 2
mm9_v1_chr6_+_54402876_54402876	6.07508	UUUUUGC	NM_001167860|Wipf3|330319|WAS/WASL interacting protein family, member 3	NM_001167861|Wipf3|330319|WAS/WASL interacting protein family, member 3
mm9_v1_chr18_+_65183180_65183324	6.03136	UUUUUGC	NM_031881|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr4_+_34011567_34011625	6.02786	UUUUUGC	BC075644|Cnr1|12801|cannabinoid receptor 1 (brain)	BC070447|Cnr1|12801|cannabinoid receptor 1 (brain)	NM_007726|Cnr1|12801|cannabinoid receptor 1 (brain)	AY522554|Cnr1|12801|cannabinoid receptor 1 (brain)
mm9_v1_chrX_+_147778717_147778787	5.99176	UUUUUGC	AK030477|Fam120c|207375|family with sequence similarity 120, member C	AK086058|Fam120c|207375|family with sequence similarity 120, member C	AK156920|Fam120c|207375|family with sequence similarity 120, member C	AY150023|Fam120c|207375|family with sequence similarity 120, member C	AY150024|Fam120c|207375|family with sequence similarity 120, member C	BC137973|Fam120c|207375|family with sequence similarity 120, member C	BC171940|Fam120c|207375|family with sequence similarity 120, member C	NM_198105|Fam120c|207375|family with sequence similarity 120, member C	AK136727|Fam120c|207375|family with sequence similarity 120, member C	AK166381|Fam120c|207375|family with sequence similarity 120, member C
mm9_v1_chr10_+_90038471_90038471	5.94213	UUUUUGC	BC098373|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177397|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr2_-_7317824_7317824	5.90489	UUUUUGC	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr10_-_62342761_62342761	5.79317	UUUUUGC	GU079948|Tet1|52463|tet oncogene 1	NM_027384|Tet1|52463|tet oncogene 1
mm9_v1_chr7_-_88837850_88837850	5.78486	UUUUUGC	NM_001164087|Homer2|26557|homer homolog 2 (Drosophila)
mm9_v1_chrX_+_160346948_160347157	5.76791	UUUUUGC	AK045558|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK047724|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK167690|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK053941|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK005223|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	BC046964|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	NM_026887|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK043776|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit
mm9_v1_chr7_-_147340532_147340650	5.75245	UUUUUGC	BC056484|Sprn|212518|shadow of prion protein	NM_183147|Sprn|212518|shadow of prion protein	AK049995|Sprn|212518|shadow of prion protein
mm9_v1_chr4_+_155367019_155367119	5.74497	UUUUUGC	D50461|Sdf4|20318|stromal cell derived factor 4	BC068152|Sdf4|20318|stromal cell derived factor 4	NM_011341|Sdf4|20318|stromal cell derived factor 4	AK090319|Sdf4|20318|stromal cell derived factor 4	U45977|Sdf4|20318|stromal cell derived factor 4
mm9_v1_chr4_-_107973683_107973743	5.72809	UUUUUGC	AK166278|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK148335|Zyg11b|414872|zyg-ll homolog B (C. elegans)	NM_001033634|Zyg11b|414872|zyg-ll homolog B (C. elegans)
mm9_v1_chr2_+_121115337_121115465	5.71081	UUUUUGC	AF182213|Mtap1a|17754|microtubule-associated protein 1 A	NM_032393|Mtap1a|17754|microtubule-associated protein 1 A	AK044057|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr10_-_42894259_42894340	5.64333	UUUUUGC	BC059851|Sobp|109205|sine oculis-binding protein homolog (Drosophila)	NM_175407|Sobp|109205|sine oculis-binding protein homolog (Drosophila)
mm9_v1_chr4_-_154735351_154735519	5.63824	UUUUUGC	BC139761|Prkcz|18762|protein kinase C, zeta	M94632|Prkcz|18762|protein kinase C, zeta	AK165750|Prkcz|18762|protein kinase C, zeta	NM_008860|Prkcz|18762|protein kinase C, zeta
mm9_v1_chr4_-_154719834_154719909	5.58661	UUUUUGC	AB110830|Prkcz|18762|protein kinase C, zeta	AK042562|Prkcz|18762|protein kinase C, zeta	AK049959|Prkcz|18762|protein kinase C, zeta	NM_001039079|Prkcz|18762|protein kinase C, zeta	BC072590|Prkcz|18762|protein kinase C, zeta
mm9_v1_chr10_+_90039435_90039495	5.57005	UUUUUGC	AK032211|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177396|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177398|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_181398|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK163750|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK132228|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK019361|Ipw|16353|imprinted gene in the Prader-Willi syndrome region	AK049899|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr4_+_17780628_17780643	5.53123	UUUUUGC	BC057926|Mmp16|17389|matrix metallopeptidase 16	NM_019724|Mmp16|17389|matrix metallopeptidase 16
mm9_v1_chr2_-_77654669_77654872	5.468	UUUUUGC	AK079322|Zfp385b|241494|zinc finger protein 385B	AK149352|Zfp385b|241494|zinc finger protein 385B	AK046798|Zfp385b|241494|zinc finger protein 385B	NM_178723|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr17_+_93598761_93598761	5.35492	UUUUUGC	BC057344|Adcyap1|11516|adenylate cyclase activating polypeptide 1	NM_009625|Adcyap1|11516|adenylate cyclase activating polypeptide 1
mm9_v1_chr9_-_113935832_113935880	5.29702	UUUUUGC	AK013142|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK089994|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145665|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145998|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK045742|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC096582|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK141177|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK163472|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK044693|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK039010|Fbxl2|72179|F-box and leucine-rich repeat protein 2	NM_178624|Fbxl2|72179|F-box and leucine-rich repeat protein 2
mm9_v1_chr2_+_19579607_19579745	5.28349	UUUUUGC	NM_027715|Otud1|71198|OTU domain containing 1
mm9_v1_chr5_-_123214252_123214302	5.22604	UUUUUGC	AF453383|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta	BC023103|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta	NM_145358|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chr2_+_121121189_121121220	5.21801	UUUUUGC	NM_001173506|Mtap1a|17754|microtubule-associated protein 1 A	AF182212|Mtap1a|17754|microtubule-associated protein 1 A	BC028853|Mtap1a|17754|microtubule-associated protein 1 A	AK160546|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr12_+_53800369_53800393	5.19868	UUUUUGC	AK147248|Akap6|238161|A kinase (PRKA) anchor protein 6	AK147371|Akap6|238161|A kinase (PRKA) anchor protein 6	NM_198111|Akap6|238161|A kinase (PRKA) anchor protein 6
mm9_v1_chr10_+_4424140_4424212	5.15497	UUUUUGC	AK030492|Rgs17|56533|regulator of G-protein signaling 17	NM_001161822|Rgs17|56533|regulator of G-protein signaling 17	NM_019958|Rgs17|56533|regulator of G-protein signaling 17	AK018279|Rgs17|56533|regulator of G-protein signaling 17	AK045770|Rgs17|56533|regulator of G-protein signaling 17	AK046009|Rgs17|56533|regulator of G-protein signaling 17	AK078745|Rgs17|56533|regulator of G-protein signaling 17	AK163188|Rgs17|56533|regulator of G-protein signaling 17	AF191555|Rgs17|56533|regulator of G-protein signaling 17	BC064782|Rgs17|56533|regulator of G-protein signaling 17
mm9_v1_chr7_-_149276174_149276174	5.15122	UUUUUGC	NM_008748|Dusp8|18218|dual specificity phosphatase 8	X95518|Dusp8|18218|dual specificity phosphatase 8
mm9_v1_chr2_+_164311639_164311740	5.11899	UUUUUGC	NM_001048227|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr13_+_109004589_109004634	5.055	UUUUUGC	AK049118|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	BC005602|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	NM_029001|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	AK050441|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	AK137668|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	AK018616|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	AK037162|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)
mm9_v1_chr14_+_76354807_76354815	4.98248	UUUUUGC	AK004465|Kctd4|67516|potassium channel tetramerisation domain containing 4	NM_026214|Kctd4|67516|potassium channel tetramerisation domain containing 4	AK008741|Kctd4|67516|potassium channel tetramerisation domain containing 4
mm9_v1_chr1_+_87791084_87791223	4.9368	UUUUUGC	NM_022417|Itm2c|64294|integral membrane protein 2C	AB030199|Itm2c|64294|integral membrane protein 2C	AK036377|Itm2c|64294|integral membrane protein 2C	AF282981|Itm2c|64294|integral membrane protein 2C	AF272044|Itm2c|64294|integral membrane protein 2C	AK156930|Itm2c|64294|integral membrane protein 2C	BC012952|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr1_-_16646922_16646999	4.82933	UUUUUGC	AK012909|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1	AK039746|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1	BC009104|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1	NM_026456|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1	AK013089|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1	AK011958|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1
mm9_v1_chr9_-_105034128_105034154	4.75253	UUUUUGC	AK009737|Nudt16|75686|nudix (nucleoside diphosphate linked moiety X)-type motif 16	NM_029385|Nudt16|75686|nudix (nucleoside diphosphate linked moiety X)-type motif 16
mm9_v1_chr10_+_110601745_110601988	4.74867	UUUUUGC	AK037158|Osbpl8|237542|oxysterol binding protein-like 8	AK050244|Osbpl8|237542|oxysterol binding protein-like 8	NM_001003717|Osbpl8|237542|oxysterol binding protein-like 8	NM_175489|Osbpl8|237542|oxysterol binding protein-like 8
mm9_v1_chr17_-_23330163_23330200	4.72608	UUUUUGC	BC061205|Zfp40|22700|zinc finger protein 40	AK164585|Zfp40|22700|zinc finger protein 40	BC065097|Zfp40|22700|zinc finger protein 40	NM_009555|Zfp40|22700|zinc finger protein 40	AK049894|Zfp40|22700|zinc finger protein 40
mm9_v1_chrX_-_133403050_133403118	4.69537	UUUUUGC	BC107383|Rab9b|319642|RAB9B, member RAS oncogene family	AK034442|Rab9b|319642|RAB9B, member RAS oncogene family	NM_176971|Rab9b|319642|RAB9B, member RAS oncogene family	AK049693|Rab9b|319642|RAB9B, member RAS oncogene family
mm9_v1_chr3_+_84619399_84619498	4.65016	UUUUUGC	BC085184|Fbxw7|50754|F-box and WD-40 domain protein 7	BC060620|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177773|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr2_+_164311755_164311970	4.55758	UUUUUGC	BC030298|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2	NM_026797|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr3_+_84668066_84668066	4.52819	UUUUUGC	BC066093|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177774|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr14_-_62175657_62175722	4.527	UUUUUGC	AK018153|6330409N04Rik|66674|RIKEN cDNA 6330409N04 gene	NM_025697|6330409N04Rik|66674|RIKEN cDNA 6330409N04 gene
mm9_v1_chrX_-_34442878_34442893	4.40857	UUUUUGC	AK042690|Nkrf|77286|NF-kappaB repressing factor	NM_029891|Nkrf|77286|NF-kappaB repressing factor
mm9_v1_chr12_-_36769054_36769127	4.37544	UUUUUGC	BC018317|Tspan13|66109|tetraspanin 13	NM_025359|Tspan13|66109|tetraspanin 13	AK158761|Tspan13|66109|tetraspanin 13	AK167979|Tspan13|66109|tetraspanin 13	AK012571|Tspan13|66109|tetraspanin 13	AK090217|Tspan13|66109|tetraspanin 13	AK090322|Tspan13|66109|tetraspanin 13	AK165768|Tspan13|66109|tetraspanin 13	AK167495|Tspan13|66109|tetraspanin 13
mm9_v1_chr1_+_194014677_194014800	4.32786	UUUUUGC	AK140193|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_001038607|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_010600|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	U04294|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109012|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109013|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm9_v1_chr18_+_65047408_65047414	4.29417	UUUUUGC	NM_001114386|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr7_-_88851798_88851810	4.2929	UUUUUGC	AK163423|Homer2|26557|homer homolog 2 (Drosophila)	NM_001164086|Homer2|26557|homer homolog 2 (Drosophila)	NM_011983|Homer2|26557|homer homolog 2 (Drosophila)
mm9_v1_chr7_+_107756069_107756204	4.18586	UUUUUGC	AK169842|Rab6|19346|RAB6, member RAS oncogene family	NM_001163663|Rab6|19346|RAB6, member RAS oncogene family	NM_024287|Rab6|19346|RAB6, member RAS oncogene family	AK154012|Rab6|19346|RAB6, member RAS oncogene family
mm9_v1_chr7_-_88974235_88974382	4.17896	UUUUUGC	BC072618|Btbd1|83962|BTB (POZ) domain containing 1	NM_146193|Btbd1|83962|BTB (POZ) domain containing 1	BC087937|Btbd1|83962|BTB (POZ) domain containing 1	AK088345|Btbd1|83962|BTB (POZ) domain containing 1
mm9_v1_chr12_+_4134152_4134180	4.07265	UUUUUGC	NM_138305|Adcy3|104111|adenylate cyclase 3	AF458089|Adcy3|104111|adenylate cyclase 3
mm9_v1_chr12_+_4133370_4133572	3.93345	UUUUUGC	NM_001159536|Adcy3|104111|adenylate cyclase 3	NM_001159537|Adcy3|104111|adenylate cyclase 3	AK122298|Adcy3|104111|adenylate cyclase 3	BC057113|Adcy3|104111|adenylate cyclase 3	BC057316|Adcy3|104111|adenylate cyclase 3
mm9_v1_chr2_-_77541328_77541435	3.86707	UUUUUGC	BC048543|Zfp385b|241494|zinc finger protein 385B	NM_001113399|Zfp385b|241494|zinc finger protein 385B	AK047859|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr6_+_21899614_21899692	3.82267	UUUUUGC	NM_023626|Ing3|71777|inhibitor of growth family, member 3	AY007791|Ing3|71777|inhibitor of growth family, member 3	AK080787|Ing3|71777|inhibitor of growth family, member 3	AK131993|Ing3|71777|inhibitor of growth family, member 3	BC018342|Ing3|71777|inhibitor of growth family, member 3
mm9_v1_chr2_+_158492854_158492905	3.80959	UUUUUGC	AK044453|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	NM_001159662|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC054764|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC057542|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AF423761|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AK042123|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm9_v1_chr2_+_112106470_112106612	3.79773	UUUUUGC	BC062099|Slc12a6|107723|solute carrier family 12, member 6	NM_133649|Slc12a6|107723|solute carrier family 12, member 6
mm9_v1_chr4_+_32504409_32504501	3.78132	UUUUUGC	NM_001109661|Bach2|12014|BTB and CNC homology 2	BC131642|Bach2|12014|BTB and CNC homology 2
mm9_v1_chr18_-_67708826_67708826	3.74063	UUUUUGC	BC058320|Spire1|68166|spire homolog 1 (Drosophila)	NM_176832|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chr3_+_102538692_102538692	3.73913	UUUUUGC	NM_027533|Tspan2|70747|tetraspanin 2
mm9_v1_chr5_+_136108487_136108731	3.72417	UUUUUGC	AK140006|Rhbdd2|215160|rhomboid domain containing 2	AK141182|Rhbdd2|215160|rhomboid domain containing 2	NM_146002|Rhbdd2|215160|rhomboid domain containing 2	AK165926|Rhbdd2|215160|rhomboid domain containing 2	AK041845|Rhbdd2|215160|rhomboid domain containing 2	AK030434|Rhbdd2|215160|rhomboid domain containing 2	AK043674|Rhbdd2|215160|rhomboid domain containing 2	BC018360|Rhbdd2|215160|rhomboid domain containing 2	BC028957|Rhbdd2|215160|rhomboid domain containing 2	AK189822|Rhbdd2|215160|rhomboid domain containing 2	AK212798|Rhbdd2|215160|rhomboid domain containing 2
mm9_v1_chr12_-_100139666_100139693	3.70748	UUUUUGC	AK081694|Eml5|319670|echinoderm microtubule associated protein like 5	NM_001081191|Eml5|319670|echinoderm microtubule associated protein like 5
mm9_v1_chr2_-_6805937_6806041	3.66987	UUUUUGC	AK042749|Celf2|14007|CUGBP, Elav-like family member 2	AK164112|Celf2|14007|CUGBP, Elav-like family member 2	AK052102|Celf2|14007|CUGBP, Elav-like family member 2	AK135166|Celf2|14007|CUGBP, Elav-like family member 2	BC026856|Celf2|14007|CUGBP, Elav-like family member 2	AF090697|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110228|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160293|Celf2|14007|CUGBP, Elav-like family member 2	NM_010160|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr9_+_43892984_43893007	3.66805	UUUUUGC	NM_198091|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr2_+_109533719_109533771	3.65293	UUUUUGC	AY057914|Bdnf|12064|brain derived neurotrophic factor	EF125674|Bdnf|12064|brain derived neurotrophic factor	NM_001048142|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr5_-_51945054_51945159	3.65089	UUUUUGC	BC066868|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AB061324|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AF049330|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK143753|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK138668|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	NM_008904|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm9_v1_chr8_-_63462080_63462110	3.54668	UUUUUGC	AK159698|Clcn3|12725|chloride channel 3	AK036501|Clcn3|12725|chloride channel 3	NM_007711|Clcn3|12725|chloride channel 3	NM_173873|Clcn3|12725|chloride channel 3	NM_173874|Clcn3|12725|chloride channel 3
mm9_v1_chr17_+_33226311_33226311	3.54644	UUUUUGC	NM_001024950|Zfp563|240068|zinc finger protein 563
mm9_v1_chrX_+_99044723_99044723	3.54086	UUUUUGC	AK142977|Nhsl2|100042480|NHS-like 2	NM_001163610|Nhsl2|100042480|NHS-like 2
mm9_v1_chr9_-_20297116_20297218	3.51485	UUUUUGC	AK036912|Zfp426|235028|zinc finger protein 426	AK048284|Zfp426|235028|zinc finger protein 426	BC023931|Zfp426|235028|zinc finger protein 426	BC024805|Zfp426|235028|zinc finger protein 426	AK220563|Zfp426|235028|zinc finger protein 426	AK085144|Zfp426|235028|zinc finger protein 426	NM_001110309|Zfp426|235028|zinc finger protein 426	NM_146221|Zfp426|235028|zinc finger protein 426
mm9_v1_chr19_-_34676457_34676466	3.47865	UUUUUGC	NM_001101605|Gm14446|667373|predicted gene 14446
mm9_v1_chr1_+_95240200_95240244	3.47505	UUUUUGC	AK129024|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	AK009342|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	AK162517|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	AK145136|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	BC013524|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	AF222867|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	NM_023200|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7	AK009870|Ppp1r7|66385|protein phosphatase 1, regulatory (inhibitor) subunit 7
mm9_v1_chr19_-_34673889_34673923	3.428	UUUUUGC	NM_001110517|Gm14446|667373|predicted gene 14446
mm9_v1_chr1_-_107253245_107253286	3.41917	UUUUUGC	AK044638|Rnf152|320311|ring finger protein 152	NM_001160368|Rnf152|320311|ring finger protein 152	NM_178779|Rnf152|320311|ring finger protein 152
mm9_v1_chr13_-_91363591_91363597	3.39891	UUUUUGC	NM_025770|Atg10|66795|autophagy-related 10 (yeast)
mm9_v1_chr18_-_67712374_67712430	3.39258	UUUUUGC	BC058669|Spire1|68166|spire homolog 1 (Drosophila)	NM_194355|Spire1|68166|spire homolog 1 (Drosophila)	BC094375|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chr2_+_150043834_150043834	3.34745	UUUUUGC	AB470966|Zfp937|245174|zinc finger protein 937	NM_001142411|Zfp937|245174|zinc finger protein 937
mm9_v1_chr2_-_24830511_24830617	3.27963	UUUUUGC	AK003340|Mrpl41|107733|mitochondrial ribosomal protein L41	AK012636|Mrpl41|107733|mitochondrial ribosomal protein L41	AK011837|Mrpl41|107733|mitochondrial ribosomal protein L41	BC034728|Mrpl41|107733|mitochondrial ribosomal protein L41	AK032370|Mrpl41|107733|mitochondrial ribosomal protein L41	NM_001031808|Mrpl41|107733|mitochondrial ribosomal protein L41
mm9_v1_chr19_+_26679649_26679686	3.26915	UUUUUGC	BC075641|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	NM_011416|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	AK020092|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm9_v1_chr1_+_55462764_55462802	3.19634	UUUUUGC	AK083136|Plcl1|227120|phospholipase C-like 1	AK161943|Plcl1|227120|phospholipase C-like 1	NM_001114663|Plcl1|227120|phospholipase C-like 1	AK135610|Plcl1|227120|phospholipase C-like 1
mm9_v1_chr17_+_42452895_42453084	3.18508	UUUUUGC	NM_028474|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene	AK014270|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene	BC145294|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene
mm9_v1_chr5_-_139060952_139060970	3.17298	UUUUUGC	AB024005|Zfp68|24135|zinc finger protein 68	BC018171|Zfp68|24135|zinc finger protein 68	AK013868|Zfp68|24135|zinc finger protein 68	NM_001044747|Zfp68|24135|zinc finger protein 68	NM_001163797|Zfp68|24135|zinc finger protein 68	NM_013844|Zfp68|24135|zinc finger protein 68
mm9_v1_chr13_+_115608425_115608505	3.16745	UUUUUGC	NM_001113374|Mocs2|17434|molybdenum cofactor synthesis 2	NM_001113375|Mocs2|17434|molybdenum cofactor synthesis 2	NM_013826|Mocs2|17434|molybdenum cofactor synthesis 2	AK010112|Mocs2|17434|molybdenum cofactor synthesis 2	AK002719|Mocs2|17434|molybdenum cofactor synthesis 2	AK078782|Mocs2|17434|molybdenum cofactor synthesis 2	BC004631|Mocs2|17434|molybdenum cofactor synthesis 2	BC024371|Mocs2|17434|molybdenum cofactor synthesis 2	AF091872|Mocs2|17434|molybdenum cofactor synthesis 2
mm9_v1_chr12_-_101963226_101963268	3.16573	UUUUUGC	AY341873|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	AY341881|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	BC035298|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	NM_153587|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5
mm9_v1_chr12_+_31269290_31269335	3.16149	UUUUUGC	AK166323|Tmem18|211986|transmembrane protein 18	NM_172049|Tmem18|211986|transmembrane protein 18	AK133493|Tmem18|211986|transmembrane protein 18	AK160817|Tmem18|211986|transmembrane protein 18	AK170496|Tmem18|211986|transmembrane protein 18	BC024093|Tmem18|211986|transmembrane protein 18
mm9_v1_chr12_-_40764554_40764600	3.15872	UUUUUGC	NM_001039515|Arl4a|11861|ADP-ribosylation factor-like 4A	AK161281|Arl4a|11861|ADP-ribosylation factor-like 4A
mm9_v1_chr6_-_52859613_52859613	3.10115	UUUUUGC	BC048577|Jazf1|231986|JAZF zinc finger 1	NM_001168277|Jazf1|231986|JAZF zinc finger 1
mm9_v1_chr18_+_65590615_65590687	3.06848	UUUUUGC	AK164626|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	AK041919|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	AK085071|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	NM_172833|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	AK045200|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	BC110487|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	BC110488|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1
mm9_v1_chr12_+_37040755_37040991	3.047	UUUUUGC	NM_025312|Sostdc1|66042|sclerostin domain containing 1	AK002240|Sostdc1|66042|sclerostin domain containing 1	AK002396|Sostdc1|66042|sclerostin domain containing 1	AK007893|Sostdc1|66042|sclerostin domain containing 1	AK007967|Sostdc1|66042|sclerostin domain containing 1	AY255635|Sostdc1|66042|sclerostin domain containing 1	AY134666|Sostdc1|66042|sclerostin domain containing 1	BC021458|Sostdc1|66042|sclerostin domain containing 1	AB059271|Sostdc1|66042|sclerostin domain containing 1	AK007935|Sostdc1|66042|sclerostin domain containing 1
mm9_v1_chr2_-_77357674_77357722	3.04439	UUUUUGC	AK078551|Zfp385b|241494|zinc finger protein 385B	AK050293|Zfp385b|241494|zinc finger protein 385B	NM_001113400|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chrX_+_46823626_46823742	3.02314	UUUUUGC	NM_001081123|Arhgap36|75404|Rho GTPase activating protein 36	BC145645|Arhgap36|75404|Rho GTPase activating protein 36	AK048167|Arhgap36|75404|Rho GTPase activating protein 36
mm9_v1_chrX_-_83021840_83022157	2.96519	UUUUUGC	U48403|Gyk|14933|glycerol kinase	AK008186|Gyk|14933|glycerol kinase	BC003767|Gyk|14933|glycerol kinase	AK169424|Gyk|14933|glycerol kinase	AK088373|Gyk|14933|glycerol kinase	AK044308|Gyk|14933|glycerol kinase	AK169525|Gyk|14933|glycerol kinase	NM_008194|Gyk|14933|glycerol kinase	NM_212444|Gyk|14933|glycerol kinase
mm9_v1_chr7_-_4014717_4014817	2.95344	UUUUUGC	AF491829|Lair1|52855|leukocyte-associated Ig-like receptor 1	AF491830|Lair1|52855|leukocyte-associated Ig-like receptor 1	AF491831|Lair1|52855|leukocyte-associated Ig-like receptor 1	AF479685|Lair1|52855|leukocyte-associated Ig-like receptor 1	AK043664|Lair1|52855|leukocyte-associated Ig-like receptor 1	AY392763|Lair1|52855|leukocyte-associated Ig-like receptor 1	AY392764|Lair1|52855|leukocyte-associated Ig-like receptor 1	AY392765|Lair1|52855|leukocyte-associated Ig-like receptor 1	AY392766|Lair1|52855|leukocyte-associated Ig-like receptor 1	AK050281|Lair1|52855|leukocyte-associated Ig-like receptor 1	AK054158|Lair1|52855|leukocyte-associated Ig-like receptor 1	AK038574|Lair1|52855|leukocyte-associated Ig-like receptor 1	BC025901|Lair1|52855|leukocyte-associated Ig-like receptor 1	AK044465|Lair1|52855|leukocyte-associated Ig-like receptor 1	AK033472|Lair1|52855|leukocyte-associated Ig-like receptor 1	NM_001113474|Lair1|52855|leukocyte-associated Ig-like receptor 1	NM_178611|Lair1|52855|leukocyte-associated Ig-like receptor 1
mm9_v1_chr2_+_163820920_163821078	2.93505	UUUUUGC	AK150414|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK151294|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK004872|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK011389|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	NM_018753|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AF058797|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK083367|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK158932|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK204033|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC132121|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC138512|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr6_+_48345584_48345680	2.92589	UUUUUGC	AK040525|Krba1|77827|KRAB-A domain containing 1	NM_133922|Krba1|77827|KRAB-A domain containing 1	AB041543|Krba1|77827|KRAB-A domain containing 1	AK158136|4930447G04Rik|74869|RIKEN cDNA 4930447G04 gene	AK128931|Krba1|77827|KRAB-A domain containing 1	AK173281|Krba1|77827|KRAB-A domain containing 1	BC066816|Krba1|77827|KRAB-A domain containing 1
mm9_v1_chr4_+_108952859_108952895	2.91421	UUUUUGC	NM_007943|Eps15|13858|epidermal growth factor receptor pathway substrate 15
mm9_v1_chr12_-_80273320_80273473	2.91165	UUUUUGC	AF035821|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	AF035208|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	BC009810|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	BC080204|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	BC002290|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	AK160624|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	AK002289|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	NM_016800|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog
mm9_v1_chr14_+_77556622_77556644	2.90295	UUUUUGC	AK051821|Enox1|239188|ecto-NOX disulfide-thiol exchanger 1	NM_172813|Enox1|239188|ecto-NOX disulfide-thiol exchanger 1	AK045500|Enox1|239188|ecto-NOX disulfide-thiol exchanger 1
mm9_v1_chr9_+_81757308_81757350	2.89241	UUUUUGC	BC096613|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	AK082395|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	AK166209|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	AK043929|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	NM_175213|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)
mm9_v1_chr4_+_114732112_114732131	2.89194	UUUUUGC	AK144164|Tal1|21349|T-cell acute lymphocytic leukemia 1	M59764|Tal1|21349|T-cell acute lymphocytic leukemia 1	NM_011527|Tal1|21349|T-cell acute lymphocytic leukemia 1
mm9_v1_chr6_-_97129076_97129149	2.89112	UUUUUGC	AK144898|Tmf1|232286|TATA element modulatory factor 1	AK144729|Tmf1|232286|TATA element modulatory factor 1	BC150931|Tmf1|232286|TATA element modulatory factor 1	NM_001081111|Tmf1|232286|TATA element modulatory factor 1
mm9_v1_chr2_+_112124767_112124844	2.88194	UUUUUGC	AF211855|Slc12a6|107723|solute carrier family 12, member 6	NM_133648|Slc12a6|107723|solute carrier family 12, member 6
mm9_v1_chr2_-_121332347_121332403	2.88002	UUUUUGC	BC005728|Mfap1b|100034361|microfibrillar-associated protein 1B	AK012688|Mfap1a|67532|microfibrillar-associated protein 1A	AK014483|Mfap1a|67532|microfibrillar-associated protein 1A	AK077604|Mfap1a|67532|microfibrillar-associated protein 1A	AK088766|Mfap1a|67532|microfibrillar-associated protein 1A	AK032586|Mfap1a|67532|microfibrillar-associated protein 1A	AK050561|Mfap1a|67532|microfibrillar-associated protein 1A	AK161000|Mfap1a|67532|microfibrillar-associated protein 1A	NM_026220|Mfap1a|67532|microfibrillar-associated protein 1A	AK168801|Mfap1a|67532|microfibrillar-associated protein 1A
mm9_v1_chr9_+_62189138_62189256	2.85061	UUUUUGC	NM_009672|Anp32a|11737|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	AK020753|Anp32a|11737|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	BC062899|Anp32a|11737|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	AF022957|Anp32a|11737|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm9_v1_chr5_+_91332895_91333017	2.83203	UUUUUGC	AK155874|Cxcl2|20310|chemokine (C-X-C motif) ligand 2	AK137628|Cxcl2|20310|chemokine (C-X-C motif) ligand 2	AK155458|Cxcl2|20310|chemokine (C-X-C motif) ligand 2	AK157079|Cxcl2|20310|chemokine (C-X-C motif) ligand 2	AK155916|Cxcl2|20310|chemokine (C-X-C motif) ligand 2	NM_009140|Cxcl2|20310|chemokine (C-X-C motif) ligand 2	X53798|Cxcl2|20310|chemokine (C-X-C motif) ligand 2	BC119511|Cxcl2|20310|chemokine (C-X-C motif) ligand 2	BC119512|Cxcl2|20310|chemokine (C-X-C motif) ligand 2	AK150450|Cxcl2|20310|chemokine (C-X-C motif) ligand 2
mm9_v1_chr1_+_187028043_187028086	2.81467	UUUUUGC	NM_001163754|Rab3gap2|98732|RAB3 GTPase activating protein subunit 2	AK157509|Rab3gap2|98732|RAB3 GTPase activating protein subunit 2
mm9_v1_chr18_-_6241497_6241528	2.81035	UUUUUGC	BC069920|Kif5b|16573|kinesin family member 5B	BC090841|Kif5b|16573|kinesin family member 5B	BC040800|Kif5b|16573|kinesin family member 5B	AK133535|Kif5b|16573|kinesin family member 5B	AK136307|Kif5b|16573|kinesin family member 5B	NM_008448|Kif5b|16573|kinesin family member 5B
mm9_v1_chr13_-_47138563_47138585	2.77993	UUUUUGC	AF046887|Tpmt|22017|thiopurine methyltransferase	NM_016785|Tpmt|22017|thiopurine methyltransferase
mm9_v1_chr16_+_77013880_77014313	2.76232	UUUUUGC	AK011798|Usp25|30940|ubiquitin specific peptidase 25	AK036456|Usp25|30940|ubiquitin specific peptidase 25	AF170563|Usp25|30940|ubiquitin specific peptidase 25	BC048171|Usp25|30940|ubiquitin specific peptidase 25	BC063059|Usp25|30940|ubiquitin specific peptidase 25	NM_013918|Usp25|30940|ubiquitin specific peptidase 25
mm9_v1_chr15_-_86016336_86016570	2.75712	UUUUUGC	AK052269|Cerk|223753|ceramide kinase	BC094253|Cerk|223753|ceramide kinase	NM_145475|Cerk|223753|ceramide kinase
mm9_v1_chr19_+_59335367_59335452	2.64025	UUUUUGC	NM_172523|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	AK035644|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	AK033871|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	AK041274|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	AK034368|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	BC078449|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2
mm9_v1_chr7_+_30553570_30553676	2.63343	UUUUUGC	AK145426|Zfp84|74352|zinc finger protein 84	NM_023750|Zfp84|74352|zinc finger protein 84	AK014610|Zfp84|74352|zinc finger protein 84	AK158422|Zfp84|74352|zinc finger protein 84	BC008540|Zfp84|74352|zinc finger protein 84	AK046223|Zfp84|74352|zinc finger protein 84	AK083748|Zfp84|74352|zinc finger protein 84	AK034259|Zfp84|74352|zinc finger protein 84
mm9_v1_chr11_+_29273673_29273774	2.63303	UUUUUGC	AK051140|Ccdc88a|108686|coiled coil domain containing 88A	NM_176841|Ccdc88a|108686|coiled coil domain containing 88A
mm9_v1_chr2_+_115407409_115407515	2.60865	UUUUUGC	NM_001145898|BC052040|399568|cDNA sequence BC052040	NM_207264|BC052040|399568|cDNA sequence BC052040	BC052040|BC052040|399568|cDNA sequence BC052040	AK154260|BC052040|399568|cDNA sequence BC052040	AK167625|BC052040|399568|cDNA sequence BC052040	AK090080|BC052040|399568|cDNA sequence BC052040
mm9_v1_chr11_+_106612525_106612642	2.57945	UUUUUGC	BC139224|Gm885|380732|predicted gene 885	BC139225|Gm885|380732|predicted gene 885	BC145580|Gm885|380732|predicted gene 885	BC145582|Gm885|380732|predicted gene 885	AK169925|Gm885|380732|predicted gene 885	AB542953|Gm885|380732|predicted gene 885	AK136488|Gm885|380732|predicted gene 885	AK137500|Gm885|380732|predicted gene 885	AK171381|Gm885|380732|predicted gene 885	NM_001033435|Gm885|380732|predicted gene 885	AK151814|Gm885|380732|predicted gene 885	AK170947|Gm885|380732|predicted gene 885	AK153506|Gm885|380732|predicted gene 885
mm9_v1_chr8_-_71259021_71259065	2.57522	UUUUUGC	BC089162|Csgalnact1|234356|chondroitin sulfate N-acetylgalactosaminyltransferase 1	NM_172753|Csgalnact1|234356|chondroitin sulfate N-acetylgalactosaminyltransferase 1
mm9_v1_chr5_+_142939884_142940027	2.54097	UUUUUGC	NM_172725|C330006K01Rik|231855|RIKEN cDNA C330006K01 gene	BC082786|C330006K01Rik|231855|RIKEN cDNA C330006K01 gene	BC099419|C330006K01Rik|231855|RIKEN cDNA C330006K01 gene	AK152402|C330006K01Rik|231855|RIKEN cDNA C330006K01 gene	AK146431|C330006K01Rik|231855|RIKEN cDNA C330006K01 gene	AK153787|C330006K01Rik|231855|RIKEN cDNA C330006K01 gene	BC057548|C330006K01Rik|231855|RIKEN cDNA C330006K01 gene
mm9_v1_chr7_-_30836383_30836414	2.51409	UUUUUGC	AK030632|Zfp14|243906|zinc finger protein 14	AK045631|Zfp14|243906|zinc finger protein 14	AK028663|Zfp14|243906|zinc finger protein 14	BC066057|Zfp14|243906|zinc finger protein 14	AK032214|Zfp14|243906|zinc finger protein 14	NM_011748|Zfp14|243906|zinc finger protein 14	NM_178733|Zfp14|243906|zinc finger protein 14
mm9_v1_chr13_-_21622917_21622982	2.50954	UUUUUGC	BC050152|Zfp192|93681|zinc finger protein 192	AK032718|Zfp192|93681|zinc finger protein 192	AK134299|Zfp192|93681|zinc finger protein 192	NM_139141|Zfp192|93681|zinc finger protein 192
mm9_v1_chr6_-_93863547_93863683	2.49505	UUUUUGC	AK163800|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083321|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	BC060273|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083320|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr8_-_37312569_37312569	2.48885	UUUUUGC	NM_001081150|Lonrf1|244421|LON peptidase N-terminal domain and ring finger 1
mm9_v1_chr6_-_148392841_148392873	2.46146	UUUUUGC	AK137545|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1	AK046396|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1	NM_198967|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1
mm9_v1_chr13_+_98011057_98011069	2.40623	UUUUUGC	AK132173|Enc1|13803|ectodermal-neural cortex 1	NM_007930|Enc1|13803|ectodermal-neural cortex 1	AK044906|Enc1|13803|ectodermal-neural cortex 1	AK049187|Enc1|13803|ectodermal-neural cortex 1
mm9_v1_chr19_-_28057437_28057437	2.37352	UUUUUGC	NM_001166414|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr11_+_51103421_51103421	2.35279	UUUUUGC	AF410792|Col23a1|237759|collagen, type XXIII, alpha 1	NM_153393|Col23a1|237759|collagen, type XXIII, alpha 1
mm9_v1_chr4_-_133556751_133556816	2.34006	UUUUUGC	AK149138|Dhdds|67422|dehydrodolichyl diphosphate synthase	BC004011|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK049991|Dhdds|67422|dehydrodolichyl diphosphate synthase	NM_026144|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK004993|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK014317|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK034277|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK135087|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK017556|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK171207|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK036929|Dhdds|67422|dehydrodolichyl diphosphate synthase
mm9_v1_chr9_+_58430031_58430196	2.33997	UUUUUGC	NM_009145|Nptn|20320|neuroplastin	BC039191|Nptn|20320|neuroplastin
mm9_v1_chr7_-_30736911_30736911	2.33624	UUUUUGC	BC050048|Zfp74|72723|zinc finger protein 74	NM_178384|Zfp74|72723|zinc finger protein 74
mm9_v1_chrX_-_103124651_103124717	2.30535	UUUUUGC	AK135019|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AF026032|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AK088095|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	NM_009530|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm9_v1_chr9_-_99469275_99469317	2.3033	UUUUUGC	BC038866|Armc8|74125|armadillo repeat containing 8	AK004793|Armc8|74125|armadillo repeat containing 8	NM_001166138|Armc8|74125|armadillo repeat containing 8	NM_028768|Armc8|74125|armadillo repeat containing 8
mm9_v1_chr5_-_136020946_136020998	2.2875	UUUUUGC	AK147246|Hip1|215114|huntingtin interacting protein 1	AK147269|Hip1|215114|huntingtin interacting protein 1	AK166346|Hip1|215114|huntingtin interacting protein 1	AK011828|Hip1|215114|huntingtin interacting protein 1	BC017516|Hip1|215114|huntingtin interacting protein 1	AK087586|Hip1|215114|huntingtin interacting protein 1	NM_146001|Hip1|215114|huntingtin interacting protein 1
mm9_v1_chr19_+_46647844_46647860	2.27768	UUUUUGC	AK162407|Sfxn2|94279|sideroflexin 2	NM_053196|Sfxn2|94279|sideroflexin 2	AK034875|Sfxn2|94279|sideroflexin 2	BC019808|Sfxn2|94279|sideroflexin 2
mm9_v1_chr15_-_77949709_77949709	2.26867	UUUUUGC	AF077739|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2	NM_007583|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2
mm9_v1_chr1_-_78193381_78193710	2.26847	UUUUUGC	BC048699|Pax3|18505|paired box gene 3	AK157760|Pax3|18505|paired box gene 3	AK012493|Pax3|18505|paired box gene 3	AK014337|Pax3|18505|paired box gene 3	AK044985|Pax3|18505|paired box gene 3	AK144973|Pax3|18505|paired box gene 3	AK147919|Pax3|18505|paired box gene 3	X59358|Pax3|18505|paired box gene 3	AK048723|Pax3|18505|paired box gene 3	AK083424|Pax3|18505|paired box gene 3	AK148354|Pax3|18505|paired box gene 3	AK045018|Pax3|18505|paired box gene 3	NM_001159520|Pax3|18505|paired box gene 3	NM_008781|Pax3|18505|paired box gene 3
mm9_v1_chr11_-_62270815_62270835	2.26739	UUUUUGC	AK035813|Ncor1|20185|nuclear receptor co-repressor 1	AK077420|Ncor1|20185|nuclear receptor co-repressor 1	NM_011308|Ncor1|20185|nuclear receptor co-repressor 1
mm9_v1_chr1_-_159342713_159342735	2.24785	UUUUUGC	AK039584|Rasal2|226525|RAS protein activator like 2	NM_177644|Rasal2|226525|RAS protein activator like 2
mm9_v1_chr17_-_46968361_46968361	2.23815	UUUUUGC	BC151032|BC032203|210982|cDNA sequence BC032203	BC151054|BC032203|210982|cDNA sequence BC032203	NM_001100452|BC032203|210982|cDNA sequence BC032203
mm9_v1_chr5_+_123794456_123794498	2.21616	UUUUUGC	NM_029850|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK086803|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK044782|Bcl7a|77045|B-cell CLL/lymphoma 7A
mm9_v1_chr13_-_70980619_70980688	2.21505	UUUUUGC	AK173338|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	AK031314|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	AK134523|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	NM_172053|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	BC034739|Adamts16|271127|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16
mm9_v1_chr11_+_105451296_105451348	2.20552	UUUUUGC	AK019982|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	NM_181071|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	AK051973|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm9_v1_chr17_-_66799086_66799133	2.19465	UUUUUGC	AK147631|1110012J17Rik|68617|RIKEN cDNA 1110012J17 gene	AK147691|1110012J17Rik|68617|RIKEN cDNA 1110012J17 gene	AK147205|1110012J17Rik|68617|RIKEN cDNA 1110012J17 gene	NM_001114098|1110012J17Rik|68617|RIKEN cDNA 1110012J17 gene	NM_172963|1110012J17Rik|68617|RIKEN cDNA 1110012J17 gene
mm9_v1_chr11_+_60879305_60879305	2.18778	UUUUUGC	AK017299|Kcnj12|16515|potassium inwardly-rectifying channel, subfamily J, member 12	NM_010603|Kcnj12|16515|potassium inwardly-rectifying channel, subfamily J, member 12
mm9_v1_chr2_-_165710128_165710217	2.17932	UUUUUGC	AK038961|Zmynd8|228880|zinc finger, MYND-type containing 8	AK155864|Zmynd8|228880|zinc finger, MYND-type containing 8	BC048186|Zmynd8|228880|zinc finger, MYND-type containing 8	NM_027230|Zmynd8|228880|zinc finger, MYND-type containing 8
mm9_v1_chr11_-_88579517_88579542	2.14284	UUUUUGC	AK156439|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049637|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049688|Msi2|76626|Musashi homolog 2 (Drosophila)	NM_054043|Msi2|76626|Musashi homolog 2 (Drosophila)
mm9_v1_chr5_+_125921888_125921947	2.11832	UUUUUGC	NM_029752|Bri3bp|76809|Bri3 binding protein
mm9_v1_chr3_-_101728226_101728375	2.11665	UUUUUGC	AK090352|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15	AK011679|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15	BC094925|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15	AK082482|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15	NM_001039371|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15
mm9_v1_chr13_+_21454688_21454753	2.10991	UUUUUGC	AK129138|Zscan12|22758|zinc finger and SCAN domain containing 12	NM_016684|Zscan12|22758|zinc finger and SCAN domain containing 12	AK075886|Zscan12|22758|zinc finger and SCAN domain containing 12	AK139837|Zscan12|22758|zinc finger and SCAN domain containing 12	AK142005|Zscan12|22758|zinc finger and SCAN domain containing 12	BC027041|Zscan12|22758|zinc finger and SCAN domain containing 12
mm9_v1_chr19_-_34715232_34715232	2.08213	UUUUUGC	AK153247|2010002M12Rik|112419|RIKEN cDNA 2010002M12 gene	NM_053217|2010002M12Rik|112419|RIKEN cDNA 2010002M12 gene
mm9_v1_chr2_-_39046224_39046253	2.07117	UUUUUGC	BC132485|Scai|320271|suppressor of cancer cell invasion	BC144986|Scai|320271|suppressor of cancer cell invasion	BC144987|Scai|320271|suppressor of cancer cell invasion	BC144989|Scai|320271|suppressor of cancer cell invasion	AK044772|Scai|320271|suppressor of cancer cell invasion	AK082408|Scai|320271|suppressor of cancer cell invasion	AK083280|Scai|320271|suppressor of cancer cell invasion	NM_178778|Scai|320271|suppressor of cancer cell invasion	AK163712|Scai|320271|suppressor of cancer cell invasion
mm9_v1_chr19_-_28085534_28085655	2.0595	UUUUUGC	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr19_+_17030600_17030608	2.01013	UUUUUGC	AK165582|Prune2|353211|prune homolog 2 (Drosophila)	AK020727|Prune2|353211|prune homolog 2 (Drosophila)	AK039241|Prune2|353211|prune homolog 2 (Drosophila)	AK165913|Prune2|353211|prune homolog 2 (Drosophila)	NM_181348|Prune2|353211|prune homolog 2 (Drosophila)
mm9_v1_chr16_-_3872273_3872373	2.00459	UUUUUGC	AK016727|Zfp597|71063|zinc finger protein 597	NM_001033159|Zfp597|71063|zinc finger protein 597
mm9_v1_chr9_+_43875103_43875168	1.95609	UUUUUGC	NM_198092|Usp2|53376|ubiquitin specific peptidase 2	AK138799|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr17_+_33102747_33102840	1.94891	UUUUUGC	NM_153063|Zfp472|224691|zinc finger protein 472	AK142395|Zfp472|224691|zinc finger protein 472	BC027407|Zfp472|224691|zinc finger protein 472	AY195875|Zfp472|224691|zinc finger protein 472	BC023090|Zfp472|224691|zinc finger protein 472
mm9_v1_chr14_-_57430529_57430552	1.94033	UUUUUGC	AK036513|Zmym5|219105|zinc finger, MYM-type 5	AK155333|Zmym5|219105|zinc finger, MYM-type 5	NM_144842|Zmym5|219105|zinc finger, MYM-type 5
mm9_v1_chr9_+_43877511_43877533	1.93742	UUUUUGC	NM_016808|Usp2|53376|ubiquitin specific peptidase 2	BC017517|Usp2|53376|ubiquitin specific peptidase 2	AY255640|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr2_+_109514856_109514856	1.93523	UUUUUGC	AY057908|Bdnf|12064|brain derived neurotrophic factor	EF125669|Bdnf|12064|brain derived neurotrophic factor	NM_007540|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr3_-_90294832_90294961	1.89338	UUUUUGC	AF086838|Snapin|20615|SNAP-associated protein	AK152057|Snapin|20615|SNAP-associated protein	BC048691|Snapin|20615|SNAP-associated protein	AK007458|Snapin|20615|SNAP-associated protein	AK044085|Snapin|20615|SNAP-associated protein	AK048007|Snapin|20615|SNAP-associated protein	AK135006|Snapin|20615|SNAP-associated protein	AK077840|Snapin|20615|SNAP-associated protein	AK080718|Snapin|20615|SNAP-associated protein	AK035147|Snapin|20615|SNAP-associated protein	AK050151|Snapin|20615|SNAP-associated protein	NM_133854|Snapin|20615|SNAP-associated protein
mm9_v1_chr11_-_18918923_18918971	1.88478	UUUUUGC	AK032947|Meis1|17268|Meis homeobox 1	AK049720|Meis1|17268|Meis homeobox 1	BC023689|Meis1|17268|Meis homeobox 1	AK168684|Meis1|17268|Meis homeobox 1	AK134321|Meis1|17268|Meis homeobox 1	AK140748|Meis1|17268|Meis homeobox 1	NM_001193271|Meis1|17268|Meis homeobox 1	NM_010789|Meis1|17268|Meis homeobox 1
mm9_v1_chr2_+_179177132_179177182	1.83623	UUUUUGC	BC047991|Cdh4|12561|cadherin 4	NM_009867|Cdh4|12561|cadherin 4
mm9_v1_chr8_+_119873069_119873069	1.80551	UUUUUGC	AK016712|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene	NM_028941|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr8_+_73429830_73429980	1.76932	UUUUUGC	BC150729|Mtap1s|270058|microtubule-associated protein 1S	NM_173013|Mtap1s|270058|microtubule-associated protein 1S	AK082854|Mtap1s|270058|microtubule-associated protein 1S	AK042159|Mtap1s|270058|microtubule-associated protein 1S	AK032300|Mtap1s|270058|microtubule-associated protein 1S	DQ387862|Mtap1s|270058|microtubule-associated protein 1S	BC058166|Mtap1s|270058|microtubule-associated protein 1S	BC079598|Mtap1s|270058|microtubule-associated protein 1S
mm9_v1_chr2_-_150865063_150865140	1.73552	UUUUUGC	AK164971|Nanp|67311|N-acetylneuraminic acid phosphatase	BC018527|Nanp|67311|N-acetylneuraminic acid phosphatase	AK005566|Nanp|67311|N-acetylneuraminic acid phosphatase	AK021344|Nanp|67311|N-acetylneuraminic acid phosphatase	BC083086|Nanp|67311|N-acetylneuraminic acid phosphatase	NM_026086|Nanp|67311|N-acetylneuraminic acid phosphatase
mm9_v1_chr5_-_147032932_147033023	1.70924	UUUUUGC	AY039004|Rnf6|74132|ring finger protein (C3H2C3 type) 6	AK049503|Rnf6|74132|ring finger protein (C3H2C3 type) 6	BC138545|Rnf6|74132|ring finger protein (C3H2C3 type) 6	AK004745|Rnf6|74132|ring finger protein (C3H2C3 type) 6	NM_028774|Rnf6|74132|ring finger protein (C3H2C3 type) 6
mm9_v1_chr1_-_54251877_54252011	1.70535	UUUUUGC	AK042922|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_001001883|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_172655|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	AK047602|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm9_v1_chr1_-_52290058_52290076	1.68622	UUUUUGC	AK173039|Gls|14660|glutaminase	NM_001081081|Gls|14660|glutaminase	NM_001113383|Gls|14660|glutaminase
mm9_v1_chr10_+_36226612_36226726	1.6792	UUUUUGC	NM_001081208|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC147490|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC147493|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC150973|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC158004|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	AK086098|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5
mm9_v1_chr10_-_57252252_57252346	1.64016	UUUUUGC	AF181685|Serinc1|56442|serine incorporator 1	AK148745|Serinc1|56442|serine incorporator 1	AK050514|Serinc1|56442|serine incorporator 1	AB029500|Serinc1|56442|serine incorporator 1	AK088340|Serinc1|56442|serine incorporator 1	AK133668|Serinc1|56442|serine incorporator 1	AK133975|Serinc1|56442|serine incorporator 1	AK161707|Serinc1|56442|serine incorporator 1	AK005203|Serinc1|56442|serine incorporator 1	AK167817|Serinc1|56442|serine incorporator 1	AK002847|Serinc1|56442|serine incorporator 1	AK141574|Serinc1|56442|serine incorporator 1	AK160498|Serinc1|56442|serine incorporator 1	AK159436|Serinc1|56442|serine incorporator 1	BC006940|Serinc1|56442|serine incorporator 1	NM_019760|Serinc1|56442|serine incorporator 1
mm9_v1_chr19_-_19185685_19185685	1.62423	UUUUUGC	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr9_+_44412931_44412987	1.60893	UUUUUGC	NM_001110826|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_007841|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_181324|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK148483|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK036648|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK054144|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chr19_+_11592938_11593140	1.59735	UUUUUGC	AF237909|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	NM_027209|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK172345|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	BC027425|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK075671|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK007613|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B
mm9_v1_chr2_+_57090707_57090899	1.58685	UUUUUGC	BC021359|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	NM_010274|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK167152|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	U60987|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK034353|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK151189|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	D50430|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial
mm9_v1_chr1_-_108610861_108610866	1.57242	UUUUUGC	AK049473|Bcl2|12043|B-cell leukemia/lymphoma 2	NM_009741|Bcl2|12043|B-cell leukemia/lymphoma 2	NM_177410|Bcl2|12043|B-cell leukemia/lymphoma 2
mm9_v1_chr8_-_63433528_63433596	1.56679	UUUUUGC	BC057133|Clcn3|12725|chloride channel 3	NM_173876|Clcn3|12725|chloride channel 3
mm9_v1_chr6_+_120314116_120314182	1.56093	UUUUUGC	AK041568|Kdm5a|214899|lysine (K)-specific demethylase 5A	NM_145997|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK166055|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK159079|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK144877|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK139619|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK046187|Kdm5a|214899|lysine (K)-specific demethylase 5A	BC011506|Kdm5a|214899|lysine (K)-specific demethylase 5A
mm9_v1_chr2_+_144096752_144096785	1.54521	UUUUUGC	AK031535|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene	AK049565|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene	NM_028984|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene
mm9_v1_chr6_-_50332835_50332835	1.51961	UUUUUGC	AK004768|Osbpl3|71720|oxysterol binding protein-like 3	AK037114|Osbpl3|71720|oxysterol binding protein-like 3	NM_027881|Osbpl3|71720|oxysterol binding protein-like 3
mm9_v1_chr2_-_25978328_25978339	1.51055	UUUUUGC	AK147293|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	NM_026495|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr1_-_4350323_4350394	1.49429	UUUUUGC	BC038794|Rp1|19888|retinitis pigmentosa 1 (human)	BC120927|Rp1|19888|retinitis pigmentosa 1 (human)	BC120928|Rp1|19888|retinitis pigmentosa 1 (human)	AF155141|Rp1|19888|retinitis pigmentosa 1 (human)	AK044413|Rp1|19888|retinitis pigmentosa 1 (human)	BC096607|Rp1|19888|retinitis pigmentosa 1 (human)	NM_011283|Rp1|19888|retinitis pigmentosa 1 (human)
mm9_v1_chr9_-_95758738_95758738	1.49038	UUUUUGC	BC053441|1700065D16Rik|73410|RIKEN cDNA 1700065D16 gene	NM_028533|1700065D16Rik|73410|RIKEN cDNA 1700065D16 gene
mm9_v1_chr12_+_53617063_53617093	1.49011	UUUUUGC	NM_009706|Arhgap5|11855|Rho GTPase activating protein 5	BC150823|Arhgap5|11855|Rho GTPase activating protein 5
mm9_v1_chr4_-_104782444_104782511	1.48567	UUUUUGC	NM_178143|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit	BC138565|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit	BC138566|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit
mm9_v1_chr12_-_40763924_40763965	1.47396	UUUUUGC	BC029234|Arl4a|11861|ADP-ribosylation factor-like 4A	BC003725|Arl4a|11861|ADP-ribosylation factor-like 4A	AK168618|Arl4a|11861|ADP-ribosylation factor-like 4A	AK048606|Arl4a|11861|ADP-ribosylation factor-like 4A	AK137751|Arl4a|11861|ADP-ribosylation factor-like 4A	NM_007487|Arl4a|11861|ADP-ribosylation factor-like 4A
mm9_v1_chr5_-_92707164_92707208	1.46939	UUUUUGC	AB162194|Naaa|67111|N-acylethanolamine acid amidase	BC004572|Naaa|67111|N-acylethanolamine acid amidase	AK014438|Naaa|67111|N-acylethanolamine acid amidase	AK017141|Naaa|67111|N-acylethanolamine acid amidase	AK133485|Naaa|67111|N-acylethanolamine acid amidase	AK146191|Naaa|67111|N-acylethanolamine acid amidase	AK008776|Naaa|67111|N-acylethanolamine acid amidase	AK133658|Naaa|67111|N-acylethanolamine acid amidase	NM_001163687|Naaa|67111|N-acylethanolamine acid amidase	NM_025972|Naaa|67111|N-acylethanolamine acid amidase
mm9_v1_chr8_-_35209773_35209872	1.42485	UUUUUGC	AK159401|Leprotl1|68192|leptin receptor overlapping transcript-like 1	BC004677|Leprotl1|68192|leptin receptor overlapping transcript-like 1	NM_026609|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK003329|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK153277|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK075740|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK150289|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK154712|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK013870|Leprotl1|68192|leptin receptor overlapping transcript-like 1
mm9_v1_chr5_+_66254807_66254997	1.41673	UUUUUGC	NM_001081105|Rhoh|74734|ras homolog gene family, member H	AK017885|Rhoh|74734|ras homolog gene family, member H	AK169618|Rhoh|74734|ras homolog gene family, member H
mm9_v1_chr7_-_85722668_85722860	1.40368	UUUUUGC	AY336094|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	NM_008746|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	NM_182809|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	BC139764|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	AF035399|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	AF035400|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3
mm9_v1_chr9_+_45238375_45238483	1.3885	UUUUUGC	NM_001081270|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AK147531|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AF487345|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AF487347|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1
mm9_v1_chr13_-_64349830_64349845	1.38443	UUUUUGC	AK041155|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_001122989|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chr7_-_135605026_135605189	1.3801	UUUUUGC	NM_009383|Tial1|21843|Tia1 cytotoxic granule-associated RNA binding protein-like 1	AK132677|Tial1|21843|Tia1 cytotoxic granule-associated RNA binding protein-like 1
mm9_v1_chr11_-_69635657_69635766	1.37828	UUUUUGC	BC100505|Spem1|74288|sperm maturation 1	BC048760|Spem1|74288|sperm maturation 1	EF120626|Spem1|74288|sperm maturation 1	NM_028855|Spem1|74288|sperm maturation 1	AK007080|Spem1|74288|sperm maturation 1
mm9_v1_chr3_-_40886957_40886982	1.36778	UUUUUGC	NM_027558|Pgrmc2|70804|progesterone receptor membrane component 2
mm9_v1_chr6_-_50406080_50406168	1.34938	UUUUUGC	BC086485|Osbpl3|71720|oxysterol binding protein-like 3	AK160310|Osbpl3|71720|oxysterol binding protein-like 3	NM_001163645|Osbpl3|71720|oxysterol binding protein-like 3
mm9_v1_chrX_-_54646073_54646213	1.34236	UUUUUGC	AK207357|Rbmx|19655|RNA binding motif protein, X chromosome	AJ237846|Rbmx|19655|RNA binding motif protein, X chromosome	AJ237847|Rbmx|19655|RNA binding motif protein, X chromosome	AK165006|Rbmx|19655|RNA binding motif protein, X chromosome	BC003710|Rbmx|19655|RNA binding motif protein, X chromosome	AK083899|Rbmx|19655|RNA binding motif protein, X chromosome	AK135164|Rbmx|19655|RNA binding motif protein, X chromosome	NM_001166623|Rbmx|19655|RNA binding motif protein, X chromosome	NM_011252|Rbmx|19655|RNA binding motif protein, X chromosome
mm9_v1_chr19_+_45005608_45005655	1.33906	UUUUUGC	NM_001081225|Fam178a|226151|family with sequence similarity 178, member A	AK031688|Fam178a|226151|family with sequence similarity 178, member A	AK147588|Fam178a|226151|family with sequence similarity 178, member A	AK020064|Fam178a|226151|family with sequence similarity 178, member A	AK045983|Fam178a|226151|family with sequence similarity 178, member A
mm9_v1_chr1_+_74200562_74200594	1.33516	UUUUUGC	AK158234|Cxcr2|12765|chemokine (C-X-C motif) receptor 2	NM_009909|Cxcr2|12765|chemokine (C-X-C motif) receptor 2	D17630|Cxcr2|12765|chemokine (C-X-C motif) receptor 2	BC051677|Cxcr2|12765|chemokine (C-X-C motif) receptor 2
mm9_v1_chr11_+_17111895_17111966	1.30824	UUUUUGC	NM_178909|Wdr92|103784|WD repeat domain 92	AK088218|Wdr92|103784|WD repeat domain 92	AK047691|Wdr92|103784|WD repeat domain 92	AK142228|Wdr92|103784|WD repeat domain 92	AK033294|Wdr92|103784|WD repeat domain 92	BC096540|Wdr92|103784|WD repeat domain 92
mm9_v1_chr9_-_94438499_94438504	1.30233	UUUUUGC	NM_001033145|1190002N15Rik|68861|RIKEN cDNA 1190002N15 gene
mm9_v1_chr5_+_30559138_30559249	1.2632	UUUUUGC	NM_027652|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK040494|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK079325|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK083973|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK140416|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC106097|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK048011|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK014530|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC115783|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC117551|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK122544|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK040745|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
mm9_v1_chr3_-_108692732_108692925	1.26093	UUUUUGC	BC111898|Fndc7|320181|fibronectin type III domain containing 7	BC113188|Fndc7|320181|fibronectin type III domain containing 7	AK053989|Fndc7|320181|fibronectin type III domain containing 7	AK054241|Fndc7|320181|fibronectin type III domain containing 7	NM_001165965|Fndc7|320181|fibronectin type III domain containing 7	NM_177091|Fndc7|320181|fibronectin type III domain containing 7
mm9_v1_chr9_+_21001148_21001171	1.24857	UUUUUGC	NM_019798|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chrX_+_55283804_55283819	1.22699	UUUUUGC	AK139364|Zic3|22773|zinc finger protein of the cerebellum 3	NM_009575|Zic3|22773|zinc finger protein of the cerebellum 3
mm9_v1_chr11_+_59475986_59476013	1.22655	UUUUUGC	AK154807|Mprip|26936|myosin phosphatase Rho interacting protein	NM_012027|Mprip|26936|myosin phosphatase Rho interacting protein	NM_201245|Mprip|26936|myosin phosphatase Rho interacting protein	AK158296|Mprip|26936|myosin phosphatase Rho interacting protein	AK171089|Mprip|26936|myosin phosphatase Rho interacting protein	AK170849|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr19_-_11067736_11067739	1.22582	UUUUUGC	BC147202|Ms4a15|545279|membrane-spanning 4-domains, subfamily A, member 15	BC172006|Ms4a15|545279|membrane-spanning 4-domains, subfamily A, member 15	BC172010|Ms4a15|545279|membrane-spanning 4-domains, subfamily A, member 15	AK143446|Ms4a15|545279|membrane-spanning 4-domains, subfamily A, member 15	NM_001034898|Ms4a15|545279|membrane-spanning 4-domains, subfamily A, member 15
mm9_v1_chr11_+_32433265_32433379	1.22267	UUUUUGC	NM_009288|Stk10|20868|serine/threonine kinase 10	D89728|Stk10|20868|serine/threonine kinase 10	BC096624|Stk10|20868|serine/threonine kinase 10	BC069840|Stk10|20868|serine/threonine kinase 10	AK148118|Stk10|20868|serine/threonine kinase 10	AK220448|Stk10|20868|serine/threonine kinase 10	BC128363|Stk10|20868|serine/threonine kinase 10
mm9_v1_chr11_-_97436439_97436456	1.20113	UUUUUGC	AF040944|Srcin1|56013|SRC kinase signaling inhibitor 1	NM_018873|Srcin1|56013|SRC kinase signaling inhibitor 1	U59873|Srcin1|56013|SRC kinase signaling inhibitor 1
mm9_v1_chr18_+_37467108_37467135	1.20027	UUUUUGC	AK036169|Pcdhb4|93875|protocadherin beta 4	AK143280|Pcdhb4|93875|protocadherin beta 4	AK160730|Pcdhb4|93875|protocadherin beta 4	NM_053129|Pcdhb4|93875|protocadherin beta 4	AK029277|Pcdhb4|93875|protocadherin beta 4	BC053098|Pcdhb4|93875|protocadherin beta 4
mm9_v1_chr14_-_60216634_60216802	1.19458	UUUUUGC	AK217714|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	BC006901|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	AK038926|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	AK032600|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	AK009280|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	AK032813|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	AK045962|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	AK039148|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	AK042494|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	NM_001168535|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	NM_001168536|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	NM_001168537|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	NM_001168538|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	NM_027986|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1
mm9_v1_chr9_-_122775060_122775123	1.1798	UUUUUGC	BC099930|Zfp445|235682|zinc finger protein 445	NM_173364|Zfp445|235682|zinc finger protein 445
mm9_v1_chr6_-_35489875_35489887	1.14036	UUUUUGC	NM_008098|Mtpn|14489|myotrophin
mm9_v1_chr19_+_26822892_26822948	1.13703	UUUUUGC	NM_026003|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	AK011935|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm9_v1_chr15_+_83998239_83998332	1.12599	UUUUUGC	NM_054088|Pnpla3|116939|patatin-like phospholipase domain containing 3	BC028792|Pnpla3|116939|patatin-like phospholipase domain containing 3	AY037763|Pnpla3|116939|patatin-like phospholipase domain containing 3	AK158566|Pnpla3|116939|patatin-like phospholipase domain containing 3
mm9_v1_chr13_+_74487763_74487789	1.12267	UUUUUGC	AK164539|Ccdc127|67433|coiled-coil domain containing 127	NM_001168658|Ccdc127|67433|coiled-coil domain containing 127	NM_001168659|Ccdc127|67433|coiled-coil domain containing 127	NM_024201|Ccdc127|67433|coiled-coil domain containing 127	AK170932|Ccdc127|67433|coiled-coil domain containing 127	AK002564|Ccdc127|67433|coiled-coil domain containing 127
mm9_v1_chr19_-_37281762_37281782	1.09418	UUUUUGC	BC128377|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	AY313774|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	NM_198300|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3
mm9_v1_chr1_-_140516239_140516335	1.08974	UUUUUGC	BC037697|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK165583|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	BC026541|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK035502|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	NM_021605|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK078639|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK088173|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK149308|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7
mm9_v1_chr9_+_100978450_100978485	1.08809	UUUUUGC	NM_001100451|Msl2|77853|male-specific lethal 2 homolog (Drosophila)	BC070432|Msl2|77853|male-specific lethal 2 homolog (Drosophila)
mm9_v1_chr16_+_3744037_3744202	1.085	UUUUUGC	NM_148924|Zfp263|74120|zinc finger protein 263	AK004765|Zfp263|74120|zinc finger protein 263	AK159455|Zfp263|74120|zinc finger protein 263	AF499776|Zfp263|74120|zinc finger protein 263	BC060162|Zfp263|74120|zinc finger protein 263
mm9_v1_chr19_+_22767090_22767108	1.08158	UUUUUGC	AK086143|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK085182|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035244|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035245|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035246|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3
mm9_v1_chr5_+_69948162_69948312	1.07602	UUUUUGC	AK160956|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	NM_172711|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK032597|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK165012|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK084627|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK053420|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK140534|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	BC057962|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK047411|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)
mm9_v1_chr8_+_109394141_109394246	1.076	UUUUUGC	NM_008217|Has3|15118|hyaluronan synthase 3	U86408|Has3|15118|hyaluronan synthase 3	BC138152|Has3|15118|hyaluronan synthase 3	BC138161|Has3|15118|hyaluronan synthase 3
mm9_v1_chr1_+_59969845_59969868	1.04792	UUUUUGC	AK154812|Fam117b|72750|family with sequence similarity 117, member B	NM_001037725|Fam117b|72750|family with sequence similarity 117, member B
mm9_v1_chr15_+_102807462_102807462	1.0332	UUUUUGC	BC050838|Hoxc9|15427|homeobox C9	NM_008272|Hoxc9|15427|homeobox C9
mm9_v1_chr8_-_74090499_74090547	1.02941	UUUUUGC	BC021911|Nxnl1|234404|nucleoredoxin-like 1	BC017153|Nxnl1|234404|nucleoredoxin-like 1	NM_145598|Nxnl1|234404|nucleoredoxin-like 1
mm9_v1_chr12_+_33063653_33063723	1.00654	UUUUUGC	NM_001162903|2010109K11Rik|72123|RIKEN cDNA 2010109K11 gene
mm9_v1_chr16_+_44765848_44765938	0.99883	UUUUUGC	NM_021325|Cd200r1|57781|CD200 receptor 1	AK154325|Cd200r1|57781|CD200 receptor 1	AK154722|Cd200r1|57781|CD200 receptor 1	BC052682|Cd200r1|57781|CD200 receptor 1	AK089173|Cd200r1|57781|CD200 receptor 1	AK089415|Cd200r1|57781|CD200 receptor 1	AK170735|Cd200r1|57781|CD200 receptor 1	AK171590|Cd200r1|57781|CD200 receptor 1	AK171130|Cd200r1|57781|CD200 receptor 1	AK054236|Cd200r1|57781|CD200 receptor 1
mm9_v1_chr2_+_57090045_57090088	0.991704	UUUUUGC	AK144716|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	NM_001145820|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial
mm9_v1_chr2_+_109532592_109532697	0.975929	UUUUUGC	AY057913|Bdnf|12064|brain derived neurotrophic factor	EF125673|Bdnf|12064|brain derived neurotrophic factor	NM_001048141|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr6_-_53018566_53018625	0.966036	UUUUUGC	AK043767|Jazf1|231986|JAZF zinc finger 1	AK050474|Jazf1|231986|JAZF zinc finger 1	NM_173406|Jazf1|231986|JAZF zinc finger 1
mm9_v1_chr11_-_65601774_65601862	0.94598	UUUUUGC	AK139777|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK044534|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK044698|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK036928|Map2k4|26398|mitogen-activated protein kinase kinase 4	NM_009157|Map2k4|26398|mitogen-activated protein kinase kinase 4
mm9_v1_chr16_-_92359659_92359712	0.942204	UUUUUGC	BC094276|Kcne1|16509|potassium voltage-gated channel, Isk-related subfamily, member 1	AK008938|Kcne1|16509|potassium voltage-gated channel, Isk-related subfamily, member 1	AK028907|Kcne1|16509|potassium voltage-gated channel, Isk-related subfamily, member 1	NM_008424|Kcne1|16509|potassium voltage-gated channel, Isk-related subfamily, member 1
mm9_v1_chr3_-_46251843_46251862	0.934118	UUUUUGC	NM_001101479|Pabpc4l|241989|poly(A) binding protein, cytoplasmic 4-like
mm9_v1_chr11_-_102308966_102308985	0.931968	UUUUUGC	NM_199200|Fam171a2|217219|family with sequence similarity 171, member A2
mm9_v1_chr5_-_134705423_134705497	0.928667	UUUUUGC	L11455|Ncf1|17969|neutrophil cytosolic factor 1	BC055836|Ncf1|17969|neutrophil cytosolic factor 1	AK152386|Ncf1|17969|neutrophil cytosolic factor 1	AK151593|Ncf1|17969|neutrophil cytosolic factor 1	AK149668|Ncf1|17969|neutrophil cytosolic factor 1	AK171559|Ncf1|17969|neutrophil cytosolic factor 1	AK150945|Ncf1|17969|neutrophil cytosolic factor 1	AK151316|Ncf1|17969|neutrophil cytosolic factor 1	AK152992|Ncf1|17969|neutrophil cytosolic factor 1	AK162308|Ncf1|17969|neutrophil cytosolic factor 1	AK162623|Ncf1|17969|neutrophil cytosolic factor 1	AK170462|Ncf1|17969|neutrophil cytosolic factor 1	AB002663|Ncf1|17969|neutrophil cytosolic factor 1	AK149619|Ncf1|17969|neutrophil cytosolic factor 1	AK149732|Ncf1|17969|neutrophil cytosolic factor 1	NM_010876|Ncf1|17969|neutrophil cytosolic factor 1
mm9_v1_chr6_-_94233855_94233910	0.911436	UUUUUGC	AK046635|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	BC095943|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001029850|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_010367|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	AK147358|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr15_-_64214427_64214520	0.905137	UUUUUGC	BC094581|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1	NM_010026|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1
mm9_v1_chr2_-_18314387_18314456	0.89137	UUUUUGC	AK144228|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	BC080300|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	AK133582|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	AK012505|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	NM_001190817|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	NM_007869|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1
mm9_v1_chr18_-_82862111_82862127	0.890005	UUUUUGC	BC138187|Zfp236|329002|zinc finger protein 236	BC145179|Zfp236|329002|zinc finger protein 236	BC145180|Zfp236|329002|zinc finger protein 236	NM_177832|Zfp236|329002|zinc finger protein 236
mm9_v1_chr12_+_85455277_85455306	0.886454	UUUUUGC	NM_028821|Dnalc1|105000|dynein, axonemal, light chain 1
mm9_v1_chr8_-_4325051_4325113	0.850218	UUUUUGC	AK011870|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK080365|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK075818|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK034536|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	NM_010485|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)
mm9_v1_chr5_-_72559220_72559438	0.824223	UUUUUGC	AK017777|Commd8|27784|COMM domain containing 8	AK013015|Commd8|27784|COMM domain containing 8	AK170011|Commd8|27784|COMM domain containing 8	AK013371|Commd8|27784|COMM domain containing 8	BC098183|Commd8|27784|COMM domain containing 8	AK158078|Commd8|27784|COMM domain containing 8	AK009275|Commd8|27784|COMM domain containing 8	AK151560|Commd8|27784|COMM domain containing 8	AK012653|Commd8|27784|COMM domain containing 8	AK077934|Commd8|27784|COMM domain containing 8	NM_178599|Commd8|27784|COMM domain containing 8
mm9_v1_chr19_-_40476799_40476801	0.809809	UUUUUGC	NM_001034964|Sorbs1|20411|sorbin and SH3 domain containing 1	AK146712|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr14_+_52898820_52898820	0.808686	UUUUUGC	NM_023434|Tox4|268741|TOX high mobility group box family member 4
mm9_v1_chr11_-_99146520_99146575	0.795661	UUUUUGC	GU046702|Krt24|75706|keratin 24	BC129847|Krt24|75706|keratin 24	BC129848|Krt24|75706|keratin 24	NM_029393|Krt24|75706|keratin 24	AK010165|Krt24|75706|keratin 24
mm9_v1_chr11_+_43495499_43495538	0.783629	UUUUUGC	NM_001164231|Pwwp2a|70802|PWWP domain containing 2A	NM_027557|Pwwp2a|70802|PWWP domain containing 2A	AK173305|Pwwp2a|70802|PWWP domain containing 2A
mm9_v1_chr3_+_101180976_101181070	0.760538	UUUUUGC	AK083000|Igsf3|78908|immunoglobulin superfamily, member 3	AK084011|Igsf3|78908|immunoglobulin superfamily, member 3	AK129151|Igsf3|78908|immunoglobulin superfamily, member 3	NM_207205|Igsf3|78908|immunoglobulin superfamily, member 3
mm9_v1_chr11_-_20731016_20731238	0.743119	UUUUUGC	AK041053|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK167557|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	BC019131|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	NM_173752|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK156350|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene
mm9_v1_chr9_-_35651734_35651734	0.73578	UUUUUGC	AK020329|9230110F15Rik|77080|RIKEN cDNA 9230110F15 gene	NM_029863|9230110F15Rik|77080|RIKEN cDNA 9230110F15 gene
mm9_v1_chrX_-_130811415_130811532	0.726642	UUUUUGC	BC056937|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	AK129030|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	AK028999|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	AK137595|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	AK049523|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	AK046928|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	NM_001167994|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	NM_001167995|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	NM_172540|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)
mm9_v1_chr11_-_106993235_106993235	0.717343	UUUUUGC	NM_176850|Bptf|207165|bromodomain PHD finger transcription factor
mm9_v1_chr1_-_120207674_120207826	0.69983	UUUUUGC	AK181409|Tsn|22099|translin	AK183078|Tsn|22099|translin	AK184665|Tsn|22099|translin	AK189586|Tsn|22099|translin	AK198107|Tsn|22099|translin	AK199692|Tsn|22099|translin	AK202525|Tsn|22099|translin	AK010737|Tsn|22099|translin	AF234179|Tsn|22099|translin	NM_011650|Tsn|22099|translin	X81464|Tsn|22099|translin	BC004615|Tsn|22099|translin	AK165598|Tsn|22099|translin	AK011220|Tsn|22099|translin	AK150529|Tsn|22099|translin	AK151448|Tsn|22099|translin
mm9_v1_chr7_-_25917458_25917515	0.692267	UUUUUGC	AY746974|Pou2f2|18987|POU domain, class 2, transcription factor 2	BC104488|Pou2f2|18987|POU domain, class 2, transcription factor 2	BC105647|Pou2f2|18987|POU domain, class 2, transcription factor 2	BC105920|Pou2f2|18987|POU domain, class 2, transcription factor 2	BC105921|Pou2f2|18987|POU domain, class 2, transcription factor 2	NM_001163554|Pou2f2|18987|POU domain, class 2, transcription factor 2	NM_001163555|Pou2f2|18987|POU domain, class 2, transcription factor 2	NM_001163556|Pou2f2|18987|POU domain, class 2, transcription factor 2	NM_011138|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57936|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57937|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57938|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57939|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57940|Pou2f2|18987|POU domain, class 2, transcription factor 2	X57941|Pou2f2|18987|POU domain, class 2, transcription factor 2	AK156322|Pou2f2|18987|POU domain, class 2, transcription factor 2	BC050258|Pou2f2|18987|POU domain, class 2, transcription factor 2	AY746973|Pou2f2|18987|POU domain, class 2, transcription factor 2
mm9_v1_chr11_-_66339627_66339627	0.672455	UUUUUGC	AK147504|Shisa6|380702|shisa homolog 6 (Xenopus laevis)	NM_001034874|Shisa6|380702|shisa homolog 6 (Xenopus laevis)
mm9_v1_chr3_+_52072251_52072295	0.638152	UUUUUGC	AK154041|Foxo1|56458|forkhead box O1	NM_019739|Foxo1|56458|forkhead box O1	AJ252157|Foxo1|56458|forkhead box O1
mm9_v1_chr1_-_166237573_166237642	0.629754	UUUUUGC	AK029787|Blzf1|66352|basic leucine zipper nuclear factor 1	NM_001160208|Blzf1|66352|basic leucine zipper nuclear factor 1	NM_001160209|Blzf1|66352|basic leucine zipper nuclear factor 1	NM_025505|Blzf1|66352|basic leucine zipper nuclear factor 1	AK006544|Blzf1|66352|basic leucine zipper nuclear factor 1	AK167493|Blzf1|66352|basic leucine zipper nuclear factor 1
mm9_v1_chr7_+_3581586_3581660	0.627819	UUUUUGC	AK033190|Prpf31|68988|PRP31 pre-mRNA processing factor 31 homolog (yeast)	NM_001159714|Prpf31|68988|PRP31 pre-mRNA processing factor 31 homolog (yeast)	NM_027328|Prpf31|68988|PRP31 pre-mRNA processing factor 31 homolog (yeast)	AK012987|Prpf31|68988|PRP31 pre-mRNA processing factor 31 homolog (yeast)	AY040823|Prpf31|68988|PRP31 pre-mRNA processing factor 31 homolog (yeast)	AK005294|Prpf31|68988|PRP31 pre-mRNA processing factor 31 homolog (yeast)	BC018376|Prpf31|68988|PRP31 pre-mRNA processing factor 31 homolog (yeast)	AK033283|Prpf31|68988|PRP31 pre-mRNA processing factor 31 homolog (yeast)	AK051260|Prpf31|68988|PRP31 pre-mRNA processing factor 31 homolog (yeast)	BC061461|Prpf31|68988|PRP31 pre-mRNA processing factor 31 homolog (yeast)	BC057877|Prpf31|68988|PRP31 pre-mRNA processing factor 31 homolog (yeast)	AK044457|Prpf31|68988|PRP31 pre-mRNA processing factor 31 homolog (yeast)
mm9_v1_chr8_+_106694341_106694482	0.620485	UUUUUGC	BC030426|Bean1|65115|brain expressed, associated with Nedd4, 1	AK134633|Bean1|65115|brain expressed, associated with Nedd4, 1	NM_001141922|Bean1|65115|brain expressed, associated with Nedd4, 1	NM_001141924|Bean1|65115|brain expressed, associated with Nedd4, 1	NM_001141925|Bean1|65115|brain expressed, associated with Nedd4, 1	BC138184|Bean1|65115|brain expressed, associated with Nedd4, 1
mm9_v1_chr10_-_33816255_33816324	0.616536	UUUUUGC	AK161070|Fam26e|103511|family with sequence similarity 26, member E	AK052861|Fam26e|103511|family with sequence similarity 26, member E	AK078850|Fam26e|103511|family with sequence similarity 26, member E	BC025893|Fam26e|103511|family with sequence similarity 26, member E	AK085925|Fam26e|103511|family with sequence similarity 26, member E	NM_178908|Fam26e|103511|family with sequence similarity 26, member E
mm9_v1_chr19_+_53674862_53674958	0.596301	UUUUUGC	AK165878|Smc3|13006|structural maintenace of chromosomes 3	NM_007790|Smc3|13006|structural maintenace of chromosomes 3	AK164387|Smc3|13006|structural maintenace of chromosomes 3	AK143996|Smc3|13006|structural maintenace of chromosomes 3	AK140705|Smc3|13006|structural maintenace of chromosomes 3	BC062935|Smc3|13006|structural maintenace of chromosomes 3	AF141294|Smc3|13006|structural maintenace of chromosomes 3	AF047601|Smc3|13006|structural maintenace of chromosomes 3
mm9_v1_chr8_+_36650839_36650928	0.587807	UUUUUGC	BC082308|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1	NM_001081279|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1
mm9_v1_chr19_-_40588219_40588234	0.570607	UUUUUGC	AK087553|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_178362|Sorbs1|20411|sorbin and SH3 domain containing 1	BC012703|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr14_-_19164241_19164397	0.548918	UUUUUGC	BC003781|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	AK148266|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	X92665|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	AK090177|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	NM_009455|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)
mm9_v1_chr5_-_124199380_124199422	0.547846	UUUUUGC	BC008229|Rsrc2|208606|arginine/serine-rich coiled-coil 2	AK012697|Rsrc2|208606|arginine/serine-rich coiled-coil 2	AK077854|Rsrc2|208606|arginine/serine-rich coiled-coil 2	AK166941|Rsrc2|208606|arginine/serine-rich coiled-coil 2	AK168476|Rsrc2|208606|arginine/serine-rich coiled-coil 2	AK017771|Rsrc2|208606|arginine/serine-rich coiled-coil 2	NM_001005523|Rsrc2|208606|arginine/serine-rich coiled-coil 2	NM_001005525|Rsrc2|208606|arginine/serine-rich coiled-coil 2	NM_025438|Rsrc2|208606|arginine/serine-rich coiled-coil 2
mm9_v1_chr13_+_60703261_60703571	0.530647	UUUUUGC	NM_029653|Dapk1|69635|death associated protein kinase 1	AY245540|Dapk1|69635|death associated protein kinase 1	AY245541|Dapk1|69635|death associated protein kinase 1	BC057317|Dapk1|69635|death associated protein kinase 1	BC060161|Dapk1|69635|death associated protein kinase 1	AK009701|Dapk1|69635|death associated protein kinase 1	AK145922|Dapk1|69635|death associated protein kinase 1	NM_134062|Dapk1|69635|death associated protein kinase 1
mm9_v1_chr9_+_7272513_7272544	0.526414	UUUUUGC	BC125320|Mmp13|17386|matrix metallopeptidase 13	BC125322|Mmp13|17386|matrix metallopeptidase 13	NM_008607|Mmp13|17386|matrix metallopeptidase 13	AK150728|Mmp13|17386|matrix metallopeptidase 13	AK151626|Mmp13|17386|matrix metallopeptidase 13	AK152916|Mmp13|17386|matrix metallopeptidase 13	AK153458|Mmp13|17386|matrix metallopeptidase 13	AK155188|Mmp13|17386|matrix metallopeptidase 13	AK152507|Mmp13|17386|matrix metallopeptidase 13	AK159921|Mmp13|17386|matrix metallopeptidase 13	AK160819|Mmp13|17386|matrix metallopeptidase 13	X66473|Mmp13|17386|matrix metallopeptidase 13
mm9_v1_chr2_+_166619249_166619308	0.509845	UUUUUGC	AK028411|Trp53rk|76367|transformation related protein 53 regulating kinase	NM_023815|Trp53rk|76367|transformation related protein 53 regulating kinase	AK049291|Trp53rk|76367|transformation related protein 53 regulating kinase	AK046261|Trp53rk|76367|transformation related protein 53 regulating kinase	AB028045|Trp53rk|76367|transformation related protein 53 regulating kinase	AK011574|Trp53rk|76367|transformation related protein 53 regulating kinase
mm9_v1_chr8_+_13405080_13405105	0.498761	UUUUUGC	BC096611|Grk1|24013|G protein-coupled receptor kinase 1	NM_011881|Grk1|24013|G protein-coupled receptor kinase 1	BC075722|Grk1|24013|G protein-coupled receptor kinase 1
mm9_v1_chr2_-_105744649_105744720	0.489191	UUUUUGC	AJ276004|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK039758|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	NM_023876|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK034040|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK020742|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK034529|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK039447|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK079069|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK037104|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK168964|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)
mm9_v1_chr1_-_127331883_127332158	0.488734	UUUUUGC	AK147931|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK160047|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK168568|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK150487|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK153204|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK159668|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK167891|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK150991|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK167148|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	BC005557|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	NM_023735|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK168771|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK150589|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK159135|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK152865|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK153150|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK159775|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK004554|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK083343|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK145536|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK153079|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)
mm9_v1_chr6_-_71773747_71773805	0.486134	UUUUUGC	AK039187|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010369|Mrpl35|66223|mitochondrial ribosomal protein L35	AK012807|Mrpl35|66223|mitochondrial ribosomal protein L35	AK004385|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010223|Mrpl35|66223|mitochondrial ribosomal protein L35	BC028750|Mrpl35|66223|mitochondrial ribosomal protein L35	NM_025430|Mrpl35|66223|mitochondrial ribosomal protein L35
mm9_v1_chr13_+_77274778_77274859	0.462595	UUUUUGC	NM_001081353|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	NM_001145676|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK165312|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK050886|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK008859|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	BC089469|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	BC151066|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	BC157949|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK143619|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene
mm9_v1_chr8_+_28153013_28153055	0.43271	UUUUUGC	NM_001039077|Prosc|114863|proline synthetase co-transcribed	NM_001039078|Prosc|114863|proline synthetase co-transcribed	NM_054057|Prosc|114863|proline synthetase co-transcribed	BC061045|Prosc|114863|proline synthetase co-transcribed	AK147670|Prosc|114863|proline synthetase co-transcribed
mm9_v1_chr13_+_54167169_54167276	0.418639	UUUUUGC	AK012650|Sfxn1|14057|sideroflexin 1	NM_027324|Sfxn1|14057|sideroflexin 1	AF325260|Sfxn1|14057|sideroflexin 1	BC005743|Sfxn1|14057|sideroflexin 1	AK151110|Sfxn1|14057|sideroflexin 1
mm9_v1_chr5_-_115223373_115223529	0.418236	UUUUUGC	AF148693|Git2|26431|G protein-coupled receptor kinase-interactor 2	AK005365|Git2|26431|G protein-coupled receptor kinase-interactor 2	AK017943|Git2|26431|G protein-coupled receptor kinase-interactor 2	BC043062|Git2|26431|G protein-coupled receptor kinase-interactor 2	BC056993|Git2|26431|G protein-coupled receptor kinase-interactor 2	NM_001077360|Git2|26431|G protein-coupled receptor kinase-interactor 2	NM_019834|Git2|26431|G protein-coupled receptor kinase-interactor 2	AK220323|Git2|26431|G protein-coupled receptor kinase-interactor 2	NM_001077359|Git2|26431|G protein-coupled receptor kinase-interactor 2	AK148029|Git2|26431|G protein-coupled receptor kinase-interactor 2
mm9_v1_chr1_-_133964541_133964638	0.410964	UUUUUGC	AK162495|Mfsd4|213006|major facilitator superfamily domain containing 4	AK048692|Mfsd4|213006|major facilitator superfamily domain containing 4	NM_001114662|Mfsd4|213006|major facilitator superfamily domain containing 4	NM_172510|Mfsd4|213006|major facilitator superfamily domain containing 4
mm9_v1_chr9_-_14304843_14304925	0.410925	UUUUUGC	AK155227|Kdm4d|244694|lysine (K)-specific demethylase 4D	AK030020|Kdm4d|244694|lysine (K)-specific demethylase 4D	NM_173433|Kdm4d|244694|lysine (K)-specific demethylase 4D
mm9_v1_chr7_+_146038066_146038078	0.409487	UUUUUGC	BC066022|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform	NM_026391|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform
mm9_v1_chr9_-_106378901_106379002	0.404018	UUUUUGC	BC062204|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK044223|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK088125|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AF368233|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	NM_145619|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK145259|Parp3|235587|poly (ADP-ribose) polymerase family, member 3
mm9_v1_chr4_-_108790578_108790640	0.395958	UUUUUGC	BC089163|Osbpl9|100273|oxysterol binding protein-like 9	AK035658|Osbpl9|100273|oxysterol binding protein-like 9	AK172010|Osbpl9|100273|oxysterol binding protein-like 9	NM_001134791|Osbpl9|100273|oxysterol binding protein-like 9	NM_173350|Osbpl9|100273|oxysterol binding protein-like 9
mm9_v1_chr11_+_11586215_11586246	0.392002	UUUUUGC	NM_001025597|Ikzf1|22778|IKAROS family zinc finger 1	NM_009578|Ikzf1|22778|IKAROS family zinc finger 1	AK036833|Ikzf1|22778|IKAROS family zinc finger 1	AK040268|Ikzf1|22778|IKAROS family zinc finger 1
mm9_v1_chr1_-_82765022_82765035	0.383057	UUUUUGC	BC117736|Tm4sf20|66261|transmembrane 4 L six family member 20	AK007532|Tm4sf20|66261|transmembrane 4 L six family member 20	AK017154|Tm4sf20|66261|transmembrane 4 L six family member 20	AK017195|Tm4sf20|66261|transmembrane 4 L six family member 20	NM_025453|Tm4sf20|66261|transmembrane 4 L six family member 20	AK017209|Tm4sf20|66261|transmembrane 4 L six family member 20
mm9_v1_chr5_+_88237145_88237179	0.370326	UUUUUGC	AK164767|Csn1s2b|12992|casein alpha s2-like B	AK085744|Csn1s2b|12992|casein alpha s2-like B	NM_009973|Csn1s2b|12992|casein alpha s2-like B	AK164763|Csn1s2b|12992|casein alpha s2-like B	AK021343|Csn1s2b|12992|casein alpha s2-like B	AK052780|Csn1s2b|12992|casein alpha s2-like B	AK052789|Csn1s2b|12992|casein alpha s2-like B	AK085747|Csn1s2b|12992|casein alpha s2-like B	AK164768|Csn1s2b|12992|casein alpha s2-like B	AK021337|Csn1s2b|12992|casein alpha s2-like B	AK164795|Csn1s2b|12992|casein alpha s2-like B	BC002084|Csn1s2b|12992|casein alpha s2-like B	J00379|Csn1s2b|12992|casein alpha s2-like B	V00740|Csn1s2b|12992|casein alpha s2-like B
mm9_v1_chr11_+_52578152_52578230	0.366851	UUUUUGC	AK046350|Fstl4|320027|follistatin-like 4	AK081114|Fstl4|320027|follistatin-like 4	AF374459|Fstl4|320027|follistatin-like 4	NM_177059|Fstl4|320027|follistatin-like 4	BC132353|Fstl4|320027|follistatin-like 4	BC144824|Fstl4|320027|follistatin-like 4
mm9_v1_chrX_-_101609169_101609195	0.362728	UUUUUGC	AK151967|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152535|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152816|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152946|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK084853|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK040069|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	BC151037|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	NM_009592|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	BC080769|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm9_v1_chr3_+_86028611_86028623	0.357963	UUUUUGC	AF187731|Lrba|80877|LPS-responsive beige-like anchor	AF188506|Lrba|80877|LPS-responsive beige-like anchor	AF188507|Lrba|80877|LPS-responsive beige-like anchor	NM_001077687|Lrba|80877|LPS-responsive beige-like anchor	NM_001077688|Lrba|80877|LPS-responsive beige-like anchor	NM_030695|Lrba|80877|LPS-responsive beige-like anchor	AK085208|Lrba|80877|LPS-responsive beige-like anchor
mm9_v1_chr12_-_56922146_56922187	0.354887	UUUUUGC	AK046680|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	AY596972|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	AY596973|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	AY596974|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	NM_001003719|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	NM_001112714|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	NM_019994|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1
mm9_v1_chr7_-_134519509_134519563	0.352649	UUUUUGC	BC058799|Zfp747|269997|zinc finger protein 747	AK032584|Zfp747|269997|zinc finger protein 747	AK042972|Zfp747|269997|zinc finger protein 747	NM_175560|Zfp747|269997|zinc finger protein 747
mm9_v1_chr18_-_7626805_7626890	0.347267	UUUUUGC	AK033081|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	BC049662|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK012883|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK036956|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK035303|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK050710|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK162694|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK078849|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	NM_001081287|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	NM_001161620|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK027937|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
mm9_v1_chr17_-_10512217_10512250	0.336325	UUUUUGC	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr10_+_62442963_62442971	0.324139	UUUUUGC	AK045485|Rufy2|70432|RUN and FYVE domain-containing 2	NM_027425|Rufy2|70432|RUN and FYVE domain-containing 2
mm9_v1_chr7_+_130267398_130267398	0.321392	UUUUUGC	NM_144925|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr12_-_103196366_103196464	0.309151	UUUUUGC	AF537188|Atxn3|110616|ataxin 3	AK030842|Atxn3|110616|ataxin 3	AK008675|Atxn3|110616|ataxin 3	BC087880|Atxn3|110616|ataxin 3	BC049743|Atxn3|110616|ataxin 3	NM_001167914|Atxn3|110616|ataxin 3	NM_029705|Atxn3|110616|ataxin 3
mm9_v1_chr5_+_12383165_12383165	0.304706	UUUUUGC	AK052671|Sema3d|108151|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	NM_028882|Sema3d|108151|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
mm9_v1_chr19_-_40588297_40588344	0.296836	UUUUUGC	NM_009166|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr19_+_16207300_16207320	0.295446	UUUUUGC	AK147393|Gnaq|14682|guanine nucleotide binding protein, alpha q polypeptide	NM_008139|Gnaq|14682|guanine nucleotide binding protein, alpha q polypeptide
mm9_v1_chr9_+_74885522_74885560	0.288379	UUUUUGC	BC040206|Arpp19|59046|cAMP-regulated phosphoprotein 19	NM_021548|Arpp19|59046|cAMP-regulated phosphoprotein 19
mm9_v1_chr16_-_96303958_96304070	0.287881	UUUUUGC	BC095940|Brwd1|93871|bromodomain and WD repeat domain containing 1	BC145265|Brwd1|93871|bromodomain and WD repeat domain containing 1	AJ292467|Brwd1|93871|bromodomain and WD repeat domain containing 1	AJ292468|Brwd1|93871|bromodomain and WD repeat domain containing 1	AK030493|Brwd1|93871|bromodomain and WD repeat domain containing 1	NM_001103179|Brwd1|93871|bromodomain and WD repeat domain containing 1	NM_145125|Brwd1|93871|bromodomain and WD repeat domain containing 1	NM_176928|Brwd1|93871|bromodomain and WD repeat domain containing 1	AK051870|Brwd1|93871|bromodomain and WD repeat domain containing 1
mm9_v1_chr9_-_24307580_24307676	0.271347	UUUUUGC	NM_172920|Dpy19l1|244745|dpy-19-like 1 (C. elegans)
mm9_v1_chr2_-_25947915_25947915	0.265626	UUUUUGC	NM_001037098|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr2_+_133378934_133378934	0.261753	UUUUUGC	BC100344|Bmp2|12156|bone morphogenetic protein 2	NM_007553|Bmp2|12156|bone morphogenetic protein 2
mm9_v1_chr15_+_85566122_85566257	0.243814	UUUUUGC	AK035676|Ppara|19013|peroxisome proliferator activated receptor alpha	NM_011144|Ppara|19013|peroxisome proliferator activated receptor alpha	BC016892|Ppara|19013|peroxisome proliferator activated receptor alpha
mm9_v1_chr19_-_40525876_40525887	0.241057	UUUUUGC	AF078666|Sorbs1|20411|sorbin and SH3 domain containing 1	AF078667|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_001034962|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_001034963|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr2_+_120229566_120229631	0.227861	UUUUUGC	AK036238|Ganc|76051|glucosidase, alpha; neutral C	NM_172672|Ganc|76051|glucosidase, alpha; neutral C
mm9_v1_chr14_+_73542316_73542336	0.22363	UUUUUGC	NM_001170694|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	NM_134083|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm9_v1_chr8_-_9976197_9976322	0.216831	UUUUUGC	AK083353|Lig4|319583|ligase IV, DNA, ATP-dependent	AK148081|Lig4|319583|ligase IV, DNA, ATP-dependent	NM_176953|Lig4|319583|ligase IV, DNA, ATP-dependent
mm9_v1_chr9_-_35936363_35936363	0.212451	UUUUUGC	NM_001167587|Gm5916|546123|predicted gene 5916
mm9_v1_chr2_-_105239368_105239475	0.178713	UUUUUGC	BC049108|Rcn1|19672|reticulocalbin 1	AK159973|Rcn1|19672|reticulocalbin 1	AK017494|Rcn1|19672|reticulocalbin 1	D13003|Rcn1|19672|reticulocalbin 1	AK133971|Rcn1|19672|reticulocalbin 1	NM_009037|Rcn1|19672|reticulocalbin 1
mm9_v1_chr15_+_85565935_85565993	0.146504	UUUUUGC	AK081709|Ppara|19013|peroxisome proliferator activated receptor alpha	NM_001113418|Ppara|19013|peroxisome proliferator activated receptor alpha
mm9_v1_chr14_-_67627598_67627723	0.143419	UUUUUGC	AK220143|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	BC049081|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK139950|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK004667|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	BC085237|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK018668|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK155040|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AY057069|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK013467|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK007920|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AF067395|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK168482|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK169391|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	NM_009761|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like
mm9_v1_chr1_+_60237433_60237478	0.143238	UUUUUGC	NM_173444|Nbeal1|269198|neurobeachin like 1
mm9_v1_chr3_+_84756090_84756352	0.137139	UUUUUGC	AF391192|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_080428|Fbxw7|50754|F-box and WD-40 domain protein 7	AF427101|Fbxw7|50754|F-box and WD-40 domain protein 7	BC131648|Fbxw7|50754|F-box and WD-40 domain protein 7	AB221593|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr4_-_118993081_118993127	0.122749	UUUUUGC	BC050116|Ppih|66101|peptidyl prolyl isomerase H	BC016565|Ppih|66101|peptidyl prolyl isomerase H	BC098490|Ppih|66101|peptidyl prolyl isomerase H	AK136330|Ppih|66101|peptidyl prolyl isomerase H	AK005202|Ppih|66101|peptidyl prolyl isomerase H	AK014665|Ppih|66101|peptidyl prolyl isomerase H	AK164299|Ppih|66101|peptidyl prolyl isomerase H	AK003179|Ppih|66101|peptidyl prolyl isomerase H	AK008394|Ppih|66101|peptidyl prolyl isomerase H	AK134995|Ppih|66101|peptidyl prolyl isomerase H	NM_001110129|Ppih|66101|peptidyl prolyl isomerase H	NM_001110130|Ppih|66101|peptidyl prolyl isomerase H	NM_028677|Ppih|66101|peptidyl prolyl isomerase H
mm9_v1_chr6_+_38501333_38501546	0.0965593	UUUUUGC	AK046307|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)	AK044839|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)	NM_001170848|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)	NM_001170849|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)	NM_138680|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)	AK155264|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)	BC056383|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)	BC056354|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)	BC056970|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)	AK166155|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)	AK147889|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)	AF318301|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)	AK038543|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)	AK048581|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)	AK053863|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)	AK134191|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)
mm9_v1_chr4_-_108874844_108874876	0.0960138	UUUUUGC	AK131984|Osbpl9|100273|oxysterol binding protein-like 9	NM_133885|Osbpl9|100273|oxysterol binding protein-like 9
mm9_v1_chr6_-_127100954_127101069	0.0896664	UUUUUGC	M86182|Ccnd2|12444|cyclin D2	AK007904|Ccnd2|12444|cyclin D2	AK011412|Ccnd2|12444|cyclin D2	AK077367|Ccnd2|12444|cyclin D2	AK147345|Ccnd2|12444|cyclin D2	AK160751|Ccnd2|12444|cyclin D2	AK168954|Ccnd2|12444|cyclin D2	BC049086|Ccnd2|12444|cyclin D2	M83749|Ccnd2|12444|cyclin D2	NM_009829|Ccnd2|12444|cyclin D2
mm9_v1_chrX_-_92640149_92640178	0.0859267	UUUUUGC	BC053442|Fam123b|72345|family with sequence similarity 123, member B	AK012651|Fam123b|72345|family with sequence similarity 123, member B	AK049774|Fam123b|72345|family with sequence similarity 123, member B	NM_175179|Fam123b|72345|family with sequence similarity 123, member B
mm9_v1_chr11_-_97141747_97141925	0.0814957	UUUUUGC	BC009653|Npepps|19155|aminopeptidase puromycin sensitive	AK138772|Npepps|19155|aminopeptidase puromycin sensitive	U35646|Npepps|19155|aminopeptidase puromycin sensitive	BC086798|Npepps|19155|aminopeptidase puromycin sensitive	BC098212|Npepps|19155|aminopeptidase puromycin sensitive	NM_008942|Npepps|19155|aminopeptidase puromycin sensitive
mm9_v1_chr5_+_34185760_34185844	0.0732059	UUUUUGC	NM_001081102|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_001177884|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_175231|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	BC079668|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)
mm9_v1_chr1_+_130140700_130141098	0.0707139	UUUUUGC	AK029431|Ubxn4|67812|UBX domain protein 4	BC019795|Ubxn4|67812|UBX domain protein 4	BC012271|Ubxn4|67812|UBX domain protein 4	NM_026390|Ubxn4|67812|UBX domain protein 4	AK011233|Ubxn4|67812|UBX domain protein 4	AK012824|Ubxn4|67812|UBX domain protein 4	AK019371|Ubxn4|67812|UBX domain protein 4	AK148333|Ubxn4|67812|UBX domain protein 4	AK032206|Ubxn4|67812|UBX domain protein 4	AK147795|Ubxn4|67812|UBX domain protein 4	AK075716|Ubxn4|67812|UBX domain protein 4
mm9_v1_chr14_+_55244146_55244163	0.0353397	UUUUUGC	AK162727|Psmb11|73902|proteasome (prosome, macropain) subunit, beta type, 11	NM_175204|Psmb11|73902|proteasome (prosome, macropain) subunit, beta type, 11	AK017902|Psmb11|73902|proteasome (prosome, macropain) subunit, beta type, 11	AK037368|Psmb11|73902|proteasome (prosome, macropain) subunit, beta type, 11	AK041393|Psmb11|73902|proteasome (prosome, macropain) subunit, beta type, 11	BC117732|Psmb11|73902|proteasome (prosome, macropain) subunit, beta type, 11	BC117733|Psmb11|73902|proteasome (prosome, macropain) subunit, beta type, 11	AB299436|Psmb11|73902|proteasome (prosome, macropain) subunit, beta type, 11
mm9_v1_chr16_-_16560240_16560303	0.0217551	UUUUUGC	BC145523|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AF402611|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139232|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AF402613|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139234|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AK034504|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AK134961|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4
mm9_v1_chr15_+_32174546_32174624	0.0211576	UUUUUGC	AK143026|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK045236|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	NM_009154|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK031231|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK054256|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK165206|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK039101|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK157706|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK141612|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
mm9_v1_chr1_-_163000724_163000811	0.020119	UUUUUGC	BC089191|Dars2|226539|aspartyl-tRNA synthetase 2 (mitochondrial)	AK164885|Dars2|226539|aspartyl-tRNA synthetase 2 (mitochondrial)	AK048454|Dars2|226539|aspartyl-tRNA synthetase 2 (mitochondrial)	AK030952|Dars2|226539|aspartyl-tRNA synthetase 2 (mitochondrial)	BC076606|Dars2|226539|aspartyl-tRNA synthetase 2 (mitochondrial)	AK138809|Dars2|226539|aspartyl-tRNA synthetase 2 (mitochondrial)	NM_172644|Dars2|226539|aspartyl-tRNA synthetase 2 (mitochondrial)	AK033634|Dars2|226539|aspartyl-tRNA synthetase 2 (mitochondrial)	AK037337|Dars2|226539|aspartyl-tRNA synthetase 2 (mitochondrial)	BC057943|Dars2|226539|aspartyl-tRNA synthetase 2 (mitochondrial)	AK154133|Dars2|226539|aspartyl-tRNA synthetase 2 (mitochondrial)	AK154348|Dars2|226539|aspartyl-tRNA synthetase 2 (mitochondrial)
mm9_v1_chr9_-_117161564_117161606	0.00539953	UUUUUGC	BC108402|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK052196|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK032938|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK081921|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK051776|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK041098|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172122|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172123|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172124|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172126|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_178660|Rbms3|207181|RNA binding motif, single stranded interacting protein
